BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780524|ref|YP_003064937.1| flagellar hook-associated
protein FlgK [Candidatus Liberibacter asiaticus str. psy62]
         (480 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|20806999|ref|NP_622170.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515482|gb|AAM23774.1| Flagellar hook-associated protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 482

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/495 (15%), Positives = 171/495 (34%), Gaps = 34/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALEVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +V  R       D      +  +G+        +  E +  ++  ++  T  +
Sbjct: 61  AIGEGVKIVDIRQIRDQFLDNQYRRENKFLGEWETKAEVLSAIENIF-NEPSSSGITAVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  SKN     +   V + A  +   FN   + +     + +  I+  I+ + 
Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNMVYQHLYDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N  I     S   A+D  DQR++L+ ++S+++ I+T    N +  +     
Sbjct: 180 SYAERISRLNGEIYRFELSGQVANDLRDQRNLLVDQLSKLVNITTYEDANGNFRIDIGGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  T    ++ +K  +       +P+     V+          G            VP
Sbjct: 240 ALVSGTTAFTMSMDKNGNVIWDLTGSPVNPSSGVLKGLLDMRNGDGADGV------KGVP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            +  Q +++A  +  + ++        +   G  +  G               +      
Sbjct: 294 YYMEQWNKLAYNIAEAINKVHSQGYGLDGSTGKPLFGGFDTSLAYDKTTPYAQLIRV--- 350

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   L   G +      +   L G         ++     + D         T  ++A
Sbjct: 351 --SSDILASDGLLKIAAAKDPTALPGDN------RNALELIVLRDRPLDGLDKATFDDFA 402

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    +V+   I  +  +  GV+L EE++ ++K ++SY    ++
Sbjct: 403 RSLISNLGVDAEQANVMKKNQEVMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYAACARV 462

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+++ T++  +
Sbjct: 463 ITAMDELIDTVINRM 477


>gi|296134284|ref|YP_003641531.1| flagellar hook-associated protein FlgK [Thermincola sp. JR]
 gi|296032862|gb|ADG83630.1| flagellar hook-associated protein FlgK [Thermincola potens JR]
          Length = 479

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 172/493 (34%), Gaps = 40/493 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S     N  +       +       NI NA+ + + R+  +   +               
Sbjct: 3   STFFGLNIGRQALQAQQRALDVTAHNIANANTEGFSRQRAVMATTTPFAYPSVNRPIGAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   +    +  D  +    +  G+     +     E++  ++  +      +
Sbjct: 63  QIGTGVMVEEVKRMRDSFIDLQVRQEVNKTGEWETKNNSLQKLEVIF-NEPSDAGLRTVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +  ++ +  SK    + +   V      V + FN    ++  +  D D  I++++  + 
Sbjct: 122 DQFWEAWQELSKKPELEAVRSLVRQRGIAVAETFNHLDGQLTDLAEDLDASIKIKVDEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               ++  +ND I        +A+D  D+RD+LL ++S+I+ I+    N+  + V     
Sbjct: 182 NIAGQIDALNDQIVRIEVQGDNANDLRDKRDLLLDELSKIVQITVKEDNSGSVTVSIGGR 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       I+     +       N  ++D          +V  G IK +L +RD+ +P
Sbjct: 242 ALVSVAGVSKISAVPNGA-------NNGYVDLQWAVDGTAVSVQSGSIKGMLDMRDTTIP 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            ++ QLD++A  L+ S +                                  TI ++   
Sbjct: 295 SYRQQLDDLANALVTSLNAVHVAGYGLNKTANGINFFDAAGTTAA-------TISIDAAI 347

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    + +          +G      +  +  ++  +           T+ +Y 
Sbjct: 348 LGDLDNIAAASTAADPLASPSVENSGDGSNALNIAELKHQALL--------GTATIDDYY 399

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R  +  L     +S  +     ++ + +        GV+L EE++ +IK + +YN + + 
Sbjct: 400 RGMVAQLGVEAQESSRMVENQNLLLSQLENRRQEVSGVSLDEEMTNMIKFQHAYNAAART 459

Query: 465 IMFTDKMLQTLLE 477
           I   D+ML T++ 
Sbjct: 460 ITAMDEMLDTIVN 472


>gi|254478858|ref|ZP_05092223.1| flagellar hook-associated protein FlgK [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035220|gb|EEB75929.1| flagellar hook-associated protein FlgK [Carboxydibrachium pacificum
           DSM 12653]
          Length = 484

 Score =  269 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 81/495 (16%), Positives = 179/495 (36%), Gaps = 32/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALEVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +V  R       D      +  +G+        +  E +  ++  ++  T  +
Sbjct: 61  AIGEGVKIVDIRQIRDQFLDNQYRRENKFLGEWETKAEVLSAIENIF-NEPSSSGITAVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  SKN     +   V + A  +V  FNT  + +     + +  I+  I+ + 
Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALVDTFNTVYQHLYDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N  I     S   A+D  DQR++L+ ++S+++ I+T    N +  +     
Sbjct: 180 SYAERISRLNGEIYRFELSGQVANDLRDQRNLLVDQLSKLVNITTYEDANGNFRIDIGGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  T    ++ +K  +       +P+     V+          G            +P
Sbjct: 240 ALVSGTTAFTMSMDKNGNVIWDLTKSPVNPSSGVLKGLLDMRDGDGTNGV------KGIP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            +  Q +++A  +  S +E        +   G  + +     D         TI      
Sbjct: 294 YYMEQWNKLAYNIAKSINEVHSQGYGLDGSTGNLLFE---GFDTSSTSTYDRTIPYAQLV 350

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           + + + L   G +      +   L G         ++ N   + D         T  ++A
Sbjct: 351 KVSSAILASDGLLKIAAAKDPAALPGDN------RNALNLIALRDIPVQGLDKATFDDFA 404

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    +++   I  +  +T GV+L EE++ ++K ++SY    ++
Sbjct: 405 RSLIANLGVDAEQANVMKKNQEIMVKQIDLNRQSTSGVSLDEEMTNMLKYQKSYAACARV 464

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+++ T++  +
Sbjct: 465 ITAMDELIDTIINRM 479


>gi|256750927|ref|ZP_05491811.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256750262|gb|EEU63282.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 480

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/495 (14%), Positives = 173/495 (34%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +   R       D      +  +G+        A  E +  ++  ++     +
Sbjct: 61  AIGEGVKIQDIRQIRDQFLDNQFRRENKFLGEWETKAQVLAAVEDIF-NEPSDSGINTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  SKN     +   V + A  +   FNT  + +     + +  I+  I+ + 
Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     +   A+D  DQR++L+ ++S+++ I+T   +N +  +  +  
Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNRNFRIDIAGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++     +        P+     ++          G            VP
Sbjct: 240 ALVDGSTAFTMSLNNTGAVVWDLTGAPVNPSSGILKGLLDMRDGDGTNGI------KGVP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+ +++A  +  + +E        +   G+ +        +   Q        +   
Sbjct: 294 YYINEWNKLAYSIAQAINEVHKAGYGLDGSTGIPLFTDFTTPYDSTVQYAKLIKVSSDIL 353

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            ++              L  +   +    L     ++     + D    +    T  ++A
Sbjct: 354 AAD-------------GLEKIAAASSMATLPGDNTNALKLIALRDQGNAVLNGATFDDFA 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    + +   I  +  +  GV+L EE++ ++K ++SY  S ++
Sbjct: 401 RSLISNLGVDAQQANLMQKNQEFMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYAASARV 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITAIDELLDTLINRM 475


>gi|297544025|ref|YP_003676327.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841800|gb|ADH60316.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 480

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/495 (13%), Positives = 166/495 (33%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMVSIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +   R       D      +  +G+        A  E +  ++  ++     +
Sbjct: 61  AIGEGVKIQDIRQIRDQFLDNQYRRENKFLGEWETKAEVLAAIENIF-NEPSDSGINTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  S+N     +   V + A  +   FNT  + +     + +  I+  I+ + 
Sbjct: 120 NDFFNSLQELSENPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     +   A+D  DQR++L+ ++S+++ I+T   +N +  +  +  
Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNGNFRIDIAGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++              P+     V+          G            VP
Sbjct: 240 ALVAGSTAFTMSLNNTGEVVWDLTGTPVNPSSGVLKGLLDMRDGDGTNGV------KGVP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+ +++A  +  + +E        +    + +        +   Q        +   
Sbjct: 294 YYINEWNKLAYSMAQAINEVHKSGYGLDGSTDIPLFTDFTTPYDSTVQYAQLIKVSSHIL 353

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +              L  +   +    L     ++     + D         T  ++ 
Sbjct: 354 ADD-------------GLQKIAAASSDATLPGDNTNALKLIALRDQAISELDGATFDDFV 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              I  L  +   ++ +    + +   I  +  +  GV+L EE++ ++K +++Y  S ++
Sbjct: 401 GALISNLGVDAEQANLMLENQEFMIEQIDLNRQSISGVSLDEEMTNMLKYQKAYAASARI 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITAIDELLDTLINKM 475


>gi|167038179|ref|YP_001665757.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039112|ref|YP_001662097.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp.
           X514]
 gi|300913298|ref|ZP_07130615.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp.
           X561]
 gi|307723688|ref|YP_003903439.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp.
           X513]
 gi|320116588|ref|YP_004186747.1| flagellar hook-associated protein FlgK [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166853352|gb|ABY91761.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp.
           X514]
 gi|166857013|gb|ABY95421.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889983|gb|EFK85128.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp.
           X561]
 gi|307580749|gb|ADN54148.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp.
           X513]
 gi|319929679|gb|ADV80364.1| flagellar hook-associated protein FlgK [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 480

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/495 (14%), Positives = 173/495 (34%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +   R       D      +  +G+        A  E +  ++  ++     +
Sbjct: 61  AIGEGVKIQDIRQIRDQFLDNQFRRENKFLGEWETKAQVLAAVEDIF-NEPSDSGINTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  SKN     +   V + A  +   FNT  + +     + +  I+  I+ + 
Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     +   A+D  DQR++L+ ++S+++ I+T   +N +  +  +  
Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNRNFRIDIAGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++     +        P+     ++          G            VP
Sbjct: 240 ALVDGSTAFTMSLNNTGAVVWDLTGAPVNPSSGILKGLLDMRDGDGTNGI------KGVP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+ +++A  +  + +E        +   G+ +        +   Q        +   
Sbjct: 294 YYINEWNKLAYSIAQAINEVHKAGYGLDGSTGIPLFTDFTTPYDSTVQYAKLIKVSSDIL 353

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            ++              L  +   +    L     ++     + D    +    T  ++A
Sbjct: 354 AAD-------------GLEKIAAASSTATLPGDNTNALKLIALRDQGNAVLNGATFDDFA 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    + +   I  +  +  GV+L EE++ ++K ++SY  S ++
Sbjct: 401 RSLISNLGVDAQQANLMQKNQEFMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYAASARV 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITAIDELLDTLINRM 475


>gi|225181620|ref|ZP_03735061.1| flagellar hook-associated protein FlgK [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167728|gb|EEG76538.1| flagellar hook-associated protein FlgK [Dethiobacter alkaliphilus
           AHT 1]
          Length = 494

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 179/496 (36%), Gaps = 21/496 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           MS     N ++       +       N+ NA+   Y R+    + +              
Sbjct: 1   MSTFFGLNISRLGMQAQQKALEVTAHNVANANTPGYSRQVAGMSTTTPLPYPNGQGMLGS 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V       +   D  +      +G     + + +  EM+   +  +      +S   
Sbjct: 61  GVKVSQIARVRELFLDNQIRDEMHILGNWESRKEYLSQVEMIFM-EPSDTGFNSVLSTFF 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DS +  S +         +++NA  +V +   +  +++ +RAD  K+IEL++++L     
Sbjct: 120 DSWQELSLSPESSPARAALVENANFLVNSIQHTYTQLESVRADITKDIELKVNDLNSLAE 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  +N  I   TA     +D +D+RD+LL  +++++     + +N  + ++   G  L 
Sbjct: 180 QIKDLNQQITTLTAKGDSPNDLMDRRDLLLDNLAKMVNYDLHIADNGAVNIFI-GGRPLV 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +    +       +    SE  P     V     + + +  G+I  L+  RD  +  +  
Sbjct: 239 QQNIVNTLKTVEGTPEQNSEWLPG-PQIVWSRDERPTQINSGEIAGLIATRDDDLRKYME 297

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-----CVNPQ 343
           + + MA  L+ S +E      +     G+    G       + + I   +        P 
Sbjct: 298 EFESMAWGLVDSINEYHNNGMDLTGEYGIDFFTGDHLKTIGVNKDIQNDLRKIAASTPPI 357

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            R            +     N   ++   +                 +       T   +
Sbjct: 358 PRGEDGSEEAPFKPAPGDGSNAVQISQLRNSRITVNSDAKNLRGRLELDDEGGT-TFANF 416

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            R++I  L  +  +S  +      +   +S+   +  GV++ EE++ +++ + SY  S +
Sbjct: 417 YRDTIARLGVDSQESIRMATNQTSLVEMMSDRRDSISGVSIDEEMANMVQFQLSYQASAR 476

Query: 464 LIMFTDKMLQTLLEGV 479
           +I   D++  TL+  +
Sbjct: 477 VITTLDEIYDTLINRM 492


>gi|289577712|ref|YP_003476339.1| flagellar hook-associated protein FlgK [Thermoanaerobacter italicus
           Ab9]
 gi|289527425|gb|ADD01777.1| flagellar hook-associated protein FlgK [Thermoanaerobacter italicus
           Ab9]
          Length = 480

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 73/495 (14%), Positives = 169/495 (34%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMVSIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +   R       D      +  +G+        A  E +  ++  ++     +
Sbjct: 61  AIGEGVKIQDIRQIRDQFLDNQYRRENKFLGKWETKAQVLAAIENIF-NEPSDSGINTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  SKN     +   V + A  +   FNT  + +     + +  I+  I+ + 
Sbjct: 120 NNFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     +   A+D  DQR++L+ ++S++I I+T   +N +  +  +  
Sbjct: 180 SYAERISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLINITTYEDSNGNFRIDIAGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++              P+     V+                       VP
Sbjct: 240 ALVAGSTAFTMSLNNTGEVVWDLTGTPVNPSSGVLKGLLDMRDGDSTNGV------KGVP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+ +++A  +  + +E        +   G+ +        +   Q        +   
Sbjct: 294 YYINEWNKLAYSMAQAINEVHKSGYGLDGSTGIPLFTDFTTPYDSTVQYAQLIKVSSHIL 353

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +              L  +   +    L     ++     + D         T  ++A
Sbjct: 354 ADD-------------GLQKIAAASSDATLPGDNTNALKLIALRDQAISELDGATFDDFA 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    + +   I  +  +  GV+L EE++ ++K ++SY  S ++
Sbjct: 401 RSLISNLGVDAEQANLMQKNQKFMIKQIDLNRQSISGVSLDEEMTNMLKYQKSYAASARM 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITAIDELLDTLINKM 475


>gi|307265481|ref|ZP_07547036.1| flagellar hook-associated protein FlgK [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919435|gb|EFN49654.1| flagellar hook-associated protein FlgK [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 480

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/495 (14%), Positives = 174/495 (35%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTTGYTRQVVDMASIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +   R       D      +  +G+        A  E +  ++  ++  +  +
Sbjct: 61  AIGEGVKIQDIRQIRDQFLDNQYRRENKFLGEWETKAQVLAAVENIF-NEPSDSGISTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  +KN     +   V + A  +   FNT  + +     + +  I+  I+ + 
Sbjct: 120 NDFFNSLQELAKNPESLTVRAEVRERAIALADTFNTVYQHLNDKLNELNSTIQSRIAEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     S   A+D  DQR++L+ ++S+++ I+T   +N +  +  +  
Sbjct: 180 SYADRISKLNNEIYRFELSGQTANDLRDQRNLLVDQLSKLVNITTYEDSNGNFRIDIAGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    +  +K          + +     ++          G            +P
Sbjct: 240 ALVDGSTAFTMGIDKDGKVVWDLTGSSVNPSSGILKGLLDMRDGDGSNGI------KGIP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+ +++A  +  + +E        ++   + +       D          +      
Sbjct: 294 YYINEWNKLAYSIAQAINEVHKAGYGLDSSTNIPLF--TDFADPYDPVVKYAQLIKVSSD 351

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             + + L+   + S               L     ++     + D         T  ++A
Sbjct: 352 ILDSNGLQKIAAASSS-----------ATLPGDNTNALLLINLRDQGIPELDGATFDDFA 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    QV+   I  +  +  GV+L EE++ +IK ++SY  S ++
Sbjct: 401 RSLISNLGVDAQQANMMQQNQQVMVKQIDLNRQSVSGVSLDEEMTNMIKYQKSYAASARV 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITAMDELLDTLINRM 475


>gi|220932550|ref|YP_002509458.1| flagellar hook-associated protein FlgK [Halothermothrix orenii H
           168]
 gi|219993860|gb|ACL70463.1| flagellar hook-associated protein FlgK [Halothermothrix orenii H
           168]
          Length = 471

 Score =  259 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/497 (14%), Positives = 185/497 (37%), Gaps = 45/497 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS        +       +       NI NA+ + Y R+  + T +              
Sbjct: 1   MSTFYGIELGKRALQVQKKSLDVTGHNIANANTEGYSRQRAVHTTTDPYTVPGFTSPAGA 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V +        +     ++  +  +G     +      E++  ++   N   + 
Sbjct: 61  GQVGTGVKIEQIVRLKDDFITSRINNETQDLGAWEARKDNLHQIELIF-NEPSENGLRNL 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +     S    S N   + +  TV + A+ +++ F ++  ++ +++ D + +I++ +  +
Sbjct: 120 MDLFWSSWHELSLNPESEGVRSTVREQAKTLIEGFKSTYNQLIQLKDDINHDIDVNVQRV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                ++ ++N  I    +     A+D  D+RD+L++K+++ I +        ++ +   
Sbjct: 180 NTLGEKIAMLNKRIVAVESDPQKRANDLRDKRDLLVKKLAKYINVQAHEDGQGNLNLSIG 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
             + +       I  E+    T+   ++   +  V    N    +  GKIK  + +RD  
Sbjct: 240 GVSFVTGDTFHKIELEE---ITLPGTTSYKVVKPVWSHINSDVTITSGKIKGAMDVRDKD 296

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +  + ++L+E+   ++   +       +     G+   D  K   + +            
Sbjct: 297 IIQYIDKLNELVEGIVTEVNSIHSSGEDLNGNTGVDFFDSSKTTADTMSL---------- 346

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                          + +   N    A     +    ++     + + +       T  E
Sbjct: 347 -------------DSAIESDLNAIAAAQTGGGVGDGRNAEAIAELQNALTMSGNKSTFNE 393

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +  + I  L      ++ ++   +V+ N++    ++  GV+L EE++ +IK +Q+YN + 
Sbjct: 394 FYTSIISGLGVEAEKANMMYDNQEVMINNLENKQASISGVSLDEEMANMIKFQQAYNAAA 453

Query: 463 KLIMFTDKMLQTLLEGV 479
           K++   D+ML TL+ G+
Sbjct: 454 KMVSKVDEMLNTLINGM 470


>gi|326389602|ref|ZP_08211168.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994317|gb|EGD52743.1| flagellar hook-associated protein FlgK [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 482

 Score =  259 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/495 (14%), Positives = 167/495 (33%), Gaps = 34/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + +       NI NA+   Y R+                     
Sbjct: 1   MSTFQGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              E V +   R       D      +  +G+        A  E +  ++  ++     +
Sbjct: 61  AIGEGVKIQDIRQIRDQFLDNQFRRENKFLGEWETKAQVLAAVEDIF-NEPSDSGINTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  SKN     +   V + A  +   FNT  + +     + +  I+  IS + 
Sbjct: 120 NDFFNSLQELSKNPESLTVRAEVRERAIALADTFNTVYQHLYDKLNELNSTIQSRISEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     +   A+D  DQR++L+ ++S+++ I+T   +N +  +  +  
Sbjct: 180 SYADRISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSKLVNITTYEDSNGNFRIDIAGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++ +   +         +     ++          G            VP
Sbjct: 240 ALVDGSTAFTMSMDSTGNVVWDLTGTSVNPSSGILKGLLDMRDGDGTNGI------KGVP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+ +++A  +    +         +    + +  G         +     +      
Sbjct: 294 YYINEWNKLAYSIAKEINAVHESGYGLDGSHDIPLFGGFDTTGAYDSKVQYAQLIKV--- 350

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   L   G        +   L G            +               T  ++A
Sbjct: 351 --SSQILASDGLQKIAAASDPNALPGDNTNALQLIGLRDIPI------QGLNGATFDDFA 402

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R+ I  L  +   ++ +    QV+   I  +  +  GV+L EE++ ++K ++SY  S ++
Sbjct: 403 RSLISNLGVDAQQANMMQQNQQVMVKQIDLNRQSVSGVSLDEEMTNMLKYQKSYVASARV 462

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 463 ITVMDELLDTLINRM 477


>gi|332982896|ref|YP_004464337.1| flagellar hook-associated protein FlgK [Mahella australiensis 50-1
           BON]
 gi|332700574|gb|AEE97515.1| flagellar hook-associated protein FlgK [Mahella australiensis 50-1
           BON]
          Length = 495

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/509 (14%), Positives = 169/509 (33%), Gaps = 52/509 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S        ++  N   Q       NI NA    Y R+  ++                  
Sbjct: 3   STFYGLQIGKSAINLQQQALNVTAHNIANAGTPGYTRQQVISEAIVPPSTLGMGYIYGRW 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  +   R       D    + S  +GQ  + +      E +  ++      T  +
Sbjct: 63  QVGGGADIQEIRQLRDGYLDAQFRSESQLLGQWEVRRDMLQHLEGIF-NEPSETGITTVV 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   SLE  SKN     +   V +    +         +++ +++ AD+ + + + ++ 
Sbjct: 122 EQFFSSLEELSKNPESMSVRALVRERGITLADTIRHVYNQLEGLQSQADQGVAITVQDIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             + ++  +N+ I         A+D  D+R++L+ ++S++I I+     +    V   D 
Sbjct: 182 SHIEQIRDLNEQIFKYELGGTKANDLRDRRNLLVDELSKMIDITVNEDIDGHFSVKMGDK 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV- 282
             +      ++  E        +E++    +  +   ++  + +  G+++  + IRD + 
Sbjct: 242 ELVNHFDMHELEIEPRAVGEKLNEADVDGLLKIMWDGADITADITGGQLRGYIDIRDGIG 301

Query: 283 ------------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                       VP +  + +E A+  +  F+E+        +       +         
Sbjct: 302 PAAVGDQNETVGVPYYMAKWNEWAKAFVTEFNEQHKAGYGLNDATDKLFFEPADAAGWT- 360

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                           +     D   ++           G            +K   F  
Sbjct: 361 --------------AKDMKVSSDIDDLNNIAASATSGEPGNNGNALALLQIRDKAIAFTG 406

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            +G     +  +Y  + I  L  +   +  +    Q +   I     +  GV L EEL  
Sbjct: 407 QSG-----SFEDYINSLISTLGVDSQQAIRMVDNEQALIGQIEGKRQSISGVLLDEELMN 461

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++K +QSYN + ++I   D+ML  L+  V
Sbjct: 462 MVKFQQSYNAAARVITAMDEMLDVLVNRV 490


>gi|295401181|ref|ZP_06811154.1| flagellar hook-associated protein FlgK [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976774|gb|EFG52379.1| flagellar hook-associated protein FlgK [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 530

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 160/524 (30%), Gaps = 47/524 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+               NI NA+   Y R+                      
Sbjct: 3   STFHGLEVAKRGMFTQQAALYVTAHNIANANTPGYSRQRVNFVETEPFPPASMNRPQIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +    +  D      +S +G         A  E +  ++      +  +
Sbjct: 63  QMGTGVEAGSIQRIRDSFLDYQYRNEASKLGYWSARSEAIAKMEDIM-NEPSEFGLSKAM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++  +SL+  S N   +     V      V ++FN     ++++R D  +EI+  +  + 
Sbjct: 122 TQFWESLQDLSANPENEGARAVVRQRGIAVAESFNYLYNSLKQVRDDLGQEIKTGLLEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L +++ +ND IK    + +  +D  D+RD L+ ++S+   +      +    +  ++G
Sbjct: 182 SILKQISELNDQIKAIEPNGYLPNDLYDKRDALIDELSKYFQVKVETVPSGGNALDIAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD---- 280
                 V +D +               +F D     +       +  +  +         
Sbjct: 242 IYEISLVNQDGSTIGKIVTKNGYSKLSVFPDPTNPDAYVSEIRIEDALGNITTTISYDKF 301

Query: 281 -------------------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
                                       P     LD+MA      F+E+           
Sbjct: 302 NDLANGRIKSLIESYGYGSDPNNVKGYYPEMLADLDKMAYSFAKMFNEQHQKGYGLNGST 361

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
           G    D             +          +  +      S       N   L+   D+ 
Sbjct: 362 GKNFFDMTLSGPPTEKGAAATIKVHKDIMDNLSNIAASSNSGESGNGNNALYLSMIKDVQ 421

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                +   +      +   T+ T+  + +  IG +  +   +  +   ++ +   +   
Sbjct: 422 ITNGSATLPSGQPVSGSLPITSGTVQTFYQGLIGKIGADGQQAERMKTNAETLATSVDNK 481

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   V+L EE++ +IK + +YN + ++I   D+ML  ++  +
Sbjct: 482 RQSVSSVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIINNM 525


>gi|304317611|ref|YP_003852756.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779113|gb|ADL69672.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 478

 Score =  256 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 173/495 (34%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + Q       NI NA+   Y R+    +                
Sbjct: 1   MSTFQGLEIAKTGLFASQQALNLTGHNISNANTPGYTRQVIDLSAIAPPTTYGMADQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   R       D+     ++ +G+        +  E +  ++  +   T  I
Sbjct: 61  AIGGGVNVDGYRQIRDQYLDQQYRRENTTLGEWETKSDTLSAIEGIL-NEPSDTGITTVI 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               +SL+  SKN     +   V +N   +    N+  + +     + +  IE  +  + 
Sbjct: 120 DNFFNSLQELSKNPESLEVRAVVRENGVSLTDTINSVYQHLDDKENELNSTIESRVQEIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +   ++ +N+ I     +   A+D  DQR++L+ K+SEI+ I+T   +N +  +  S  
Sbjct: 180 SYADRISKLNNEIYRFELTGQTANDLRDQRNLLVDKLSEIVNITTYEDSNKNFRIDISGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++ +   +        P+   G ++          G            +P
Sbjct: 240 ALVDGSNAYTMSVDSTGTVKWDLAGTPVNPTGGILKGLLDMRDGDGTNGV------KGIP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            ++ QL+++A  +   F+ +       +   G+   +      +   +            
Sbjct: 294 YYKEQLNKLAYNIATVFNAQHAAGYGIDGSTGVNFFNITDSTYDPTAEYAKN-------I 346

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           + +   L D G        +  +L G    I +         + D         T  ++ 
Sbjct: 347 KVSSDILADDGLQKIAAASDPNSLPGDNTNILNLIS------LRDAKISGLNGGTFDDFV 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            + I  L  +   ++ +      +   +  +  +  GV+L EE++ ++K ++SY  S ++
Sbjct: 401 SSLISNLGVDAQQANMMQTNQSAMVKQVDYNRQSVSGVSLDEEMTNMLKYQKSYEASARM 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITVMDELLDTLINKM 475


>gi|312793870|ref|YP_004026793.1| flagellar hook-associated protein flgk [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181010|gb|ADQ41180.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 527

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/540 (15%), Positives = 171/540 (31%), Gaps = 83/540 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSSKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGMGADVQSLEQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSAVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V   A  +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRASALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
              ++  +N  I         A+D  DQR++L+ K+S+I+  +     +   +V  + G 
Sbjct: 179 IALQIADLNKQIFILELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238

Query: 226 TLFETVP------------------RDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263
           TL                        +    + N     S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSRIERNSGFESNGLPTQFNPDDPRSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV--------------------------VPIFQNQLDEMARVL 297
              +  G++K LL +RD V                          +P + N+L+E AR L
Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDIKDEKGKIVVDVPNKNSFTGIPYYLNRLNEFARKL 358

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I  F+E      +              +         +  I V+    ++ + +     V
Sbjct: 359 IEKFNELHKKGWSLNGQNKGINFF---EPPVGQKFFYARDIKVSDAIMNDLNNIATTYDV 415

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +     N               D             I       ++ ++ I  L  +   
Sbjct: 416 NNLPGGN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQG 460

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +     +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML T++ 
Sbjct: 461 AKNFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDTIVN 520


>gi|158321541|ref|YP_001514048.1| flagellar hook-associated protein FlgK [Alkaliphilus oremlandii
           OhILAs]
 gi|158141740|gb|ABW20052.1| flagellar hook-associated protein FlgK [Alkaliphilus oremlandii
           OhILAs]
          Length = 522

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/516 (16%), Positives = 175/516 (33%), Gaps = 39/516 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49
           S    F  A++    + +       N+ N + K Y R+      S               
Sbjct: 3   STFTGFTTAKSGLFASQRALDITGHNLANVNTKGYSRQRLEQVQSTPLKLAGGQGMLGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V             D      ++A G         A  E +  ++  +   T  I ++ +
Sbjct: 63  VDTTAIHQLRNEFLDYKYRDEATAFGYWDAKADGLAFIESIM-NEPSDTGITKVIDQMFE 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S    SKN +       V   A     + N +  +++K+  D + E++  + ++  +  +
Sbjct: 122 SFHELSKNPNNITTRALVRQRATTFTNSVNHTYNQLEKMVVDYNFEVQSMVKSINTYGEQ 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-----NDMVVYTSDG 224
           +  +ND I        +A+D  DQR+VL+ ++S+I+ I  +   N     +  +V    G
Sbjct: 182 IARLNDQILRFEVDGSNANDLRDQRNVLIDELSKIVDIDVMEVTNPSTLGHKQMVIKVGG 241

Query: 225 TTLFETVPRDINFEKMNSYTV-----------TSESNPIFIDGVVVSSNQGSAVPKGKIK 273
             L           K N                 E           + +       G++ 
Sbjct: 242 KPLVYHNDFTGLEAKQNLKKPFDGMDKSIHIYDIEWADGTSFYKSENVDTDVDKIGGELG 301

Query: 274 ALLQIRDS------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA--DGIKD 325
           A+L +RD        VP + N+L++  +V     +E        +   G       GI  
Sbjct: 302 AILTMRDGKDGKNKGVPHYINELNKFVKVFANRINEIHLKGYGLDGEAGRAFFTAKGIST 361

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP--DLINHYCDSFN 383
                 +     +       +    +          + +  N+A     +L+ +      
Sbjct: 362 PTGAATKDADGRVTSVDATVAGLGNINASNIRISLDIEDPNNIAASKEKNLLPNDGSIML 421

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                    G+ T     ++ ++ IG L   + ++        V+ N I +   +  GV+
Sbjct: 422 DIVNLRHDQGMFTEGKPEDFIKSLIGTLGVEKEEAGRNADNQAVLLNEIDKKRMSISGVS 481

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             EEL+ ++K + +YN S +++   D+ML  L+  +
Sbjct: 482 EDEELANMVKFQHAYNASARMMTTIDEMLDVLINRI 517


>gi|302390139|ref|YP_003825960.1| flagellar hook-associated protein FlgK [Thermosediminibacter oceani
           DSM 16646]
 gi|302200767|gb|ADL08337.1| flagellar hook-associated protein FlgK [Thermosediminibacter oceani
           DSM 16646]
          Length = 465

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 173/495 (34%), Gaps = 54/495 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+       +   ++  N+ NA+   Y R+  +   +               
Sbjct: 3   SSFFGIEIAKRALFAQQRAQENVSHNVANANTPGYSRQRPVMEATYTKPWAGMYTAAGAV 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V           D      +S++GQ  +        E +  ++  +   +  +
Sbjct: 63  QAGTGVRVADIVRIRDAFADMQYRDENSSLGQWSVQTDILRQVEAVF-NEPSDIGVSSVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++   +LE  SKN     + +TV + A  +    N  A ++ +I  D +  I +++  + 
Sbjct: 122 TQFWQALEELSKNPEAIEIRETVKERAVTLADTVNHVATKLTEILDDINFRISVKVDEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               ++  +N  I+    +   A D  D+RDVLL  +S+++ I+T    N    V     
Sbjct: 182 TLARQIADLNAQIQQMEITGITASDLRDKRDVLLDDLSKLVNINTYEDENGVFTVNVGGA 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +  +    ++F+                D      N    + KG++K LL++RD  V 
Sbjct: 242 ILVKGSDYEVMSFDGA--------------DIKWQVYNTPVNIAKGELKGLLELRDQKVK 287

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + + +   A+ L G F++      +    PG         L   +       + VN   
Sbjct: 288 TYLDSIKTFAQTLAGEFNKIHKSGYDLMGDPGEDFFIYNNSLSGSI-------LSVNQSI 340

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            ++   +            +   + G         D                  TL EY 
Sbjct: 341 LNDVKKIAAAQ--------DPDAVPGDNRNALKLADLKYMKLTTL-------GGTLDEYY 385

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            + I  L  +   S  +    + + + + E       V+L EE+S +I  + +YN + ++
Sbjct: 386 GSLIARLGIDSQQSIRMTESQEFMVSQLDEQRKAVSSVSLDEEMSRMIMYQHAYNAAARM 445

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+ML T++  +
Sbjct: 446 ITAIDEMLDTIVSRM 460


>gi|150388562|ref|YP_001318611.1| flagellar hook-associated protein FlgK [Alkaliphilus
           metalliredigens QYMF]
 gi|149948424|gb|ABR46952.1| flagellar hook-associated protein FlgK [Alkaliphilus
           metalliredigens QYMF]
          Length = 493

 Score =  253 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/499 (15%), Positives = 170/499 (34%), Gaps = 34/499 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49
           S  + FN A +    + +    +  NI NA+   Y R+      S               
Sbjct: 3   STFSGFNTATSGIFASQRSLDVVGHNIANANTPGYSRQRLEQAASTPMSLYGGKGMLGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V  V  +       D       +A+G     +      E +  ++  + S      +L  
Sbjct: 63  VDTVAIKQMRSEFLDFKYRDEVNALGYWETKEYGLEFIESIF-NEPSDTSVATVTDELFA 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E  SKN         V +         N + ++++K+  D + +I   +S++  +  +
Sbjct: 122 GFEELSKNPESITARTVVRERGIAFTNTMNQTYKQLEKLAKDVNSDINATVSSINSYADQ 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND---MVVYTSDGTT 226
           +  +N  I    A    A+D  D+R++L+  +S+++ +     N+      +V   +G  
Sbjct: 182 IAELNKQIYRFEADGSSANDLRDRRNLLIDDLSKLVNVEVRDVNDGYGSSKMVVQINGQP 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV---- 282
           L                +   +   +        S       KG++ ALL +RD      
Sbjct: 242 LVNHDQAYKLDATATKSSTFDDEINMTEIKWANGSVVNQDSLKGELGALLTLRDGTTKDN 301

Query: 283 --VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +P +  QL++       + +       + +   G+         D    + I  ++ +
Sbjct: 302 KGIPFYIEQLNDFVGSFAKAVNGIHEDGLDLDGDEGVAFFTDGNTGDQITAKNIQISLEI 361

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +                +       + + G         +  +    FD         T 
Sbjct: 362 DRD---------PRKIAAATMGELGEPVVGDGSNALRLTELRHAQMSFDNGEFKG---TP 409

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            ++  + I  L  N  ++  +     ++ N I     +  GV+L EE++ +++ + +YN 
Sbjct: 410 EDFMISLIANLGVNTQEATRMASNQSILTNQIDRQRQSISGVSLDEEMANMVRFQHAYNA 469

Query: 461 SNKLIMFTDKMLQTLLEGV 479
           S +++   D+M+  ++  +
Sbjct: 470 SARMVTTMDEMIDVIINRM 488


>gi|83589598|ref|YP_429607.1| flagellar hook-associated protein FlgK [Moorella thermoacetica ATCC
           39073]
 gi|83572512|gb|ABC19064.1| Flagellar hook-associated protein [Moorella thermoacetica ATCC
           39073]
          Length = 486

 Score =  251 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/501 (18%), Positives = 189/501 (37%), Gaps = 44/501 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
                FN A        +   +   NI NA+ + Y R+  + T +               
Sbjct: 3   GTFFGFNTALRGMQAQQRGIYTTSHNIANANTEGYTRQQVVLTATPAYPVPAMNRPGGQG 62

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V     R       D  +   + ++GQ + +Q      E++  ++  +   +  
Sbjct: 63  WQIGTGVDSQETRRLRDEFLDTQIRRETGSLGQWQQIQDVLQQVEVVF-NEPSDTGLSTL 121

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +S+   + +  SKN     +  TV++ A  + + F  SA ++ +I+ D D+ IEL++  +
Sbjct: 122 MSQFWAAWQELSKNAESSPVRTTVVETANALAEAFRHSAAQLNQIKDDIDQSIELKVKEV 181

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                ++  +N  IK   A+    +D +DQRD+LL ++S+II  S             +D
Sbjct: 182 NSLAQQIADLNGQIKNIVAAGDQPNDLMDQRDLLLDRLSKIIDFSVEKNMVTVNDEEIAD 241

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-----VVSSNQGSAVPKGKIKALLQI 278
           G    +   + +        ++ +       D          S        G+IK L + 
Sbjct: 242 GQIKIKLGDQYLVNVDGTDGSIVNMVAAGTDDANKGKIFWEDSGDEIVPANGEIKGLQKA 301

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
           R+ V   +   L+ +A  L  + +E+  +  +     G        D D          I
Sbjct: 302 REDV-QTYLTNLNTLAGELAAAINEQHILGKDLTGASGEDFFVIGDDSDTITA----ANI 356

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            VNPQ  ++ S +    + +     +  N      L +   ++ +             N 
Sbjct: 357 QVNPQIMADVSKIA--AAANDGGPGDGSNALAIAQLQHKLIENLD-------------NT 401

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           T  +Y +N    L  +  ++  +     V+ + ++    +  GV+L EE++ +++  ++Y
Sbjct: 402 TFDDYYKNFTAKLGVDAHEATRMTTNQGVLVDQLTNRKESISGVSLDEEMANMLQYLRAY 461

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             S ++I   D ML  ++ G+
Sbjct: 462 EASARMITTLDSMLDKIINGM 482


>gi|312109475|ref|YP_003987791.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y4.1MC1]
 gi|311214576|gb|ADP73180.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y4.1MC1]
          Length = 534

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/529 (14%), Positives = 184/529 (34%), Gaps = 53/529 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+               NI NA+   Y R+                      
Sbjct: 3   STFHGLEVAKRGMFTQQAALYVTAHNIANANTPGYSRQRVNFVETEPFPPASMNRPQIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +    +  D      +S +G         A  E +  ++      +  +
Sbjct: 63  QMGTGVEAGSIQRIRDSFLDYQYRNEASKLGYWSARSEAIAKMEDIM-NEPSEFGLSKAM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++  +SL+  S N   +     V      V ++FN     + +IR D  +EI+  +  + 
Sbjct: 122 TQFWESLQDLSANPENEGARAVVRQRGIAVAESFNYLYTSLSQIRDDLGQEIKTGLLEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L +++ +ND IK    + +  +D  D+RD L+ ++S+   +      +    +  ++G
Sbjct: 182 SILKQISELNDQIKAVEPNGYLPNDLYDKRDALVDELSKYFQVKVETVPSGGNALDIAEG 241

Query: 225 --------------TTLFETVPRDINFEKMNSYTVTSESNPIFI----------DGVVVS 260
                           + +     ++ +          +   ++          +   +S
Sbjct: 242 IYEISLVNQDGSTVKIVTKDGYSKLSVDPPVDPVNDPTNPDGYVSEIRIEDALGNITTIS 301

Query: 261 SNQGSAVPKGKIKALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
            ++ + +  G+IK+L++               P     LD+MA      F+ +     + 
Sbjct: 302 YDKFNDLASGRIKSLIESYGYGSDPNNVKGYYPEMLADLDKMAYSFATMFNAQHREGYDL 361

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK-NLAG 370
            N  G+   +     DN   +G + +I V+    S+   +    +  +    N    L+ 
Sbjct: 362 NNSNGVDFFEMNV-SDNTTGKGAAASIKVSDVIMSDLGKIAASSNSEESGNGNNALYLSM 420

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
             D+      +   +     V+   T+ T+  + +  IG +  +   +  +   ++ +  
Sbjct: 421 IKDVQITNGSAALPSGSGTTVSVPITSGTVQTFYQGLIGKIGVDGQQAERMKTNAETLAT 480

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +     +   V+L EE++ +IK + +YN + ++I   D+ML  ++  +
Sbjct: 481 SVDNKRQSVSSVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIINDM 529


>gi|312877567|ref|ZP_07737526.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795642|gb|EFR12012.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 522

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/535 (14%), Positives = 170/535 (31%), Gaps = 78/535 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSSKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  + 
Sbjct: 60  VGMGADVQSLEQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSAVVD 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V   A  +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRASALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+I+  +     +   +V  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238

Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263
           TL                        +            S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSNGLPTGFKPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV---------------------VPIFQNQLDEMARVLIGSFS 302
              +  G++K LL +RD V                     +P + N+L+E A+ LI  F+
Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDSQAGVDVPNKNSFTGIPYYLNRLNEFAQKLIEKFN 358

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E      +              +         +  I V+    ++ + +     V+    
Sbjct: 359 ELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDVNNLPG 415

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N               D             I       ++ ++ I  L  +   + +  
Sbjct: 416 GN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQGAKNFA 460

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML T++ 
Sbjct: 461 ENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDTIVN 515


>gi|312127297|ref|YP_003992171.1| flagellar hook-associated protein flgk [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777316|gb|ADQ06802.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 525

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGMGADVQSLEQIRDMFLDIQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSSVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V    + +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRGQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+I+  +     +   +V  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238

Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263
           TL                        +      N     S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSNGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299
              +  G++K LL +RD V                        +P + N+L+E A+ LI 
Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLSEDMTVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+E      +              +         +  I V+    ++ + +      S 
Sbjct: 359 KFNELHTQGWSLNGQNTSINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASS 415

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N               D             I       ++ ++ I  L  +   + 
Sbjct: 416 LPGGN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQGAK 460

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +     +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML  L+ 
Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVLVN 518


>gi|222529660|ref|YP_002573542.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456507|gb|ACM60769.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 525

 Score =  248 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGLGADVQSLEQIRDMFLDVQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSSVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V   A+ +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+I+  +     +   +V  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238

Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263
           TL                               N     S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYQLETDKSKIMRKSGFDSSGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299
              +  G++K LL +RD V                        +P + N+L+E A+ LI 
Sbjct: 299 VLNIKSGELKGLLDVRDGVGGLDEDVSVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+E      +              +         +  I V+    ++ + +      S 
Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASS 415

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N               D             +       ++ ++ I  L  +   + 
Sbjct: 416 LPGGN---------------DLVVDMLKLRNDNSVFKEGKFEDFLKSLISNLGVDSQGAK 460

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +     +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML  ++ 
Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518


>gi|312622116|ref|YP_004023729.1| flagellar hook-associated protein flgk [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202583|gb|ADQ45910.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 525

 Score =  248 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGMGADVQSLEQIRDMFLDIQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSSVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V   A+ +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+I+  +     +   +V  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFIVQIAGGE 238

Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263
           TL                               N     S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSSGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299
              +  G++K LL +RD V                        +P + N+L+E A+ LI 
Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDMVVNGQPVDVPNKNYFTGIPYYLNRLNEFAQKLIE 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+E      +              +         +  I V+    ++ + +      S 
Sbjct: 359 KFNELHTQGWSLNGQNTNINFF---EPPVGQTFFYARYIKVSDAVMNDLNNIATTYDASS 415

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N               D             +       ++ ++ I  L  +   + 
Sbjct: 416 LPGGN---------------DLVVDMLKLRNDNSVFKEGKFEDFLKSLISNLGVDSQGAK 460

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +     +V+   +        GV++ EE++ LI+ +  +  S ++I   D+ML  ++ 
Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIRYQHGFQASARMINAFDEMLDVIVN 518


>gi|332798814|ref|YP_004460313.1| flagellar hook-associated protein FlgK [Tepidanaerobacter sp. Re1]
 gi|332696549|gb|AEE91006.1| flagellar hook-associated protein FlgK [Tepidanaerobacter sp. Re1]
          Length = 459

 Score =  248 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/490 (13%), Positives = 169/490 (34%), Gaps = 47/490 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49
           S       A+       +   ++  N+ NA+   Y R+  +   +               
Sbjct: 3   SSFLGIEIAKTALFANQRAQQTVAHNVSNANTPGYSRQRVILEATHTAYGMGANWQIGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V           D+     +S++GQ  +        E +  ++  +      +++   
Sbjct: 63  VKVSDVDRIRDEFTDRQYRNENSSLGQWNIQSDILKQVEAVF-NEPSDIGIASVLNEFWA 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            LE+ SK+ +     +TV +    +    N +  ++  I +D +  I ++++ +    ++
Sbjct: 122 GLETLSKDAASQEARETVKEKGITLANTINHAVTQLNDIVSDINYRISIQVNEVNSIANQ 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I+        A D  D RD+LL ++S ++   +    N    +       +  
Sbjct: 182 IAQLNLQIRQAETGGASAADLKDSRDLLLDQLSNLVQFESYEDENGIFSINVGGAILVKG 241

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
               ++ F+   +                   +    + KG++K L+++RD  +  + +Q
Sbjct: 242 PDSANMEFDTSVANGT----------IKWKEYSSDVRILKGELKGLIELRDDKLENYLDQ 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD+  +     F+       N +   G+   +    + +     +S    +      +  
Sbjct: 292 LDKFTQTFADEFNAIHETGYNLDGETGIKFFEYANGVLSVNPDIVSNPSKIAAAEEED-- 349

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +     +   K    D       N T+ +Y    I 
Sbjct: 350 -----------------GIPSDNRIALELANLRYKTISID-----GRNCTIDDYYGTIIA 387

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +  +  ++         + + + E    T  V+L EE++ +I+    YN +++++   D
Sbjct: 388 KIGVDSQEATRAADSQAFMVSQLDERRQMTSSVSLDEEMTKMIQYLHGYNAASRIVTTVD 447

Query: 470 KMLQTLLEGV 479
           +ML T++  +
Sbjct: 448 EMLDTIINRM 457


>gi|302871568|ref|YP_003840204.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574427|gb|ADL42218.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 525

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/538 (14%), Positives = 169/538 (31%), Gaps = 81/538 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSSKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGMGADVQSLEQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSAVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V   A+ +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+I+  +     +   VV  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIVDTTAYEDKDGRFVVQIAGGE 238

Query: 226 TLFETVPRDINFEKMN------------------SYTVTSESNPIFIDG----VVVSSNQ 263
           TL             +                       S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSSGQPTGFKPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299
              +  G++K LL +RD V                        +P + N+L+E A+ LI 
Sbjct: 299 VLNIKSGELKGLLDMRDGVGGLDEDVSVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+E      +              +         +  I V+    ++ + +      S 
Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASN 415

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N               D             I       ++ ++ I  L  +   + 
Sbjct: 416 LPGGN---------------DLVVDMLKLRNDTSIFKEGKFEDFLKSLISNLGVDSQGAK 460

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +     +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML  ++ 
Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518


>gi|323706357|ref|ZP_08117922.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534319|gb|EGB24105.1| flagellar hook-associated protein FlgK [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 478

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/495 (15%), Positives = 168/495 (33%), Gaps = 36/495 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+     + Q       NI NA+   Y R+    +                
Sbjct: 1   MSTFQGLEIAKTGLFASQQALNLTGHNISNANTPGYTRQVIDLSAIAPPTTYGMADQWGK 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   R       D+     ++ +G+        +  E +  ++  +   T  +
Sbjct: 61  AIGGGVNVDGYRQIRDQFLDQQYRRENTTLGEWETKSDTLSAIEDIL-NEPSDTGITTVL 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               +SL+  SKN     +   V +N   +    NT  + +       +  I+  +  + 
Sbjct: 120 DNFFNSLQDLSKNPESLEVRAEVRENGISLTDTINTIYQHLDDQENQINSTIQSRVQQIN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +  +++ +N+ I     +   A+D  DQR++L+ ++SEI+ I+T   +N +  V  S  
Sbjct: 180 SYADQISKLNNEIYRFELTGQTANDLRDQRNLLVDQLSEIVNINTYEDSNGNFRVDISGQ 239

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       ++ +   +        P+   G ++          G            +P
Sbjct: 240 ALVDGNNAYTMSIDNTGTIKWDLAGTPVNPTGGILKGLLDMRDGDGTNGV------KGIP 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            ++ QL++ A  L   F+ +       +   G+   +      N   +        +   
Sbjct: 294 YYEQQLNQFAYNLATVFNAQHAAGYGLDGSTGINFFNITDTTYNPTAEYAKNIQVSSDIL 353

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +        S +     +  N+     L +                    N T  ++ 
Sbjct: 354 ADDGLQKIAAASSASSLPGDNTNVLNLIALRDTKISGL-------------NNGTFDDFI 400

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            + I  L  +   ++ +      +   +  +  +  GV+L EE++ ++K ++SY  S ++
Sbjct: 401 SSLISNLGVDAQQANQMQTNQSTMVKQVDYNRQSVSGVSLDEEMANMLKYQKSYEASARM 460

Query: 465 IMFTDKMLQTLLEGV 479
           I   D++L TL+  +
Sbjct: 461 ITVMDELLDTLINKM 475


>gi|196249402|ref|ZP_03148100.1| flagellar hook-associated protein FlgK [Geobacillus sp. G11MC16]
 gi|196211159|gb|EDY05920.1| flagellar hook-associated protein FlgK [Geobacillus sp. G11MC16]
          Length = 528

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/524 (14%), Positives = 172/524 (32%), Gaps = 49/524 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+           +   NI NA+ + Y R+                      
Sbjct: 3   STFHGLEAARRAMMAQQAALYTTGHNIANANTEGYTRQRVQLEATTPFPTPGLNRPNIPG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      +S +G         A  E +  ++  ++     +
Sbjct: 63  QMGTGVEAASVERVREYFLDIQYRGENSKLGYWEARADAVAKMEDIM-NEPSDSGLAKTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   +L+  S +   +     V      VV+ F+  +  + +IR D   +I + ++ + 
Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLTQIRTDIGTQIGVTVTKIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--------------- 209
             L +++ +N  I     + +  +D  D+RD L+ ++S+ I I                 
Sbjct: 182 SILDQISKLNAQIAEIEPNGYLPNDLYDERDRLVDELSKFIDIQVEKHPVGGNALPAAEG 241

Query: 210 ---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
              +   N +  VY   G T       D +    +    T     +    +  ++   S 
Sbjct: 242 TYDVYILNGNEKVYLVQGRTASSISFPDGSDVDDDGVRETPPDTGVGALDIGGTAVSFST 301

Query: 267 VPKGKIKALLQIRD-----------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
           +P GK++ L++               + P     LD++A      F+             
Sbjct: 302 LPNGKLRGLIEGYGYYENGVNGNVEGLYPEMLANLDKLAYTFGTLFNAVHEQGYGLNGNT 361

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
           GL    G+  ++         +   +    +  +  ++ G+ +              +  
Sbjct: 362 GLAFFSGLDQVNGAAKTIALASDIDDLDNIAAATRDKESGNGNNAINLANVRSLLLSNTT 421

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               D  + +     +    T+ T+    +  IG L      ++ +   S+ +   + E 
Sbjct: 422 VSLQDGISVDLA--SLGLPLTSGTIETNYQGWIGQLGVAGEQANRMKSNSETLRQSVEER 479

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   V+L EE+  +IK + +YN + + I   D+ML  ++ G+
Sbjct: 480 RQSVSAVSLDEEMMNMIKFQHAYNAAARQITAIDEMLDKIINGM 523


>gi|261420582|ref|YP_003254264.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC61]
 gi|319768252|ref|YP_004133753.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC52]
 gi|261377039|gb|ACX79782.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC61]
 gi|317113118|gb|ADU95610.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y412MC52]
          Length = 531

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/527 (13%), Positives = 172/527 (32%), Gaps = 52/527 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44
           S       A+           +   NI NA+ + Y R+                      
Sbjct: 3   STFHGLEAARRGMMAQQAALYTTSHNIANANTEGYTRQRVQLQPTPPFPTPGLNRPNIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      +S +G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVEASSVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   +L+  S +   +     V      VV+ F+  +  + +IR D   +I   ++ + 
Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLAQIRTDIGTQIGTTVTEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN---------NN 215
             L++++ +N+ I     + +  +D  D+RD L+ ++S+ + I                 
Sbjct: 182 SLLNQISALNERIAEIEPNGYLPNDLYDERDRLVDQLSQYMEIGVEKHPTGGNALPMAEG 241

Query: 216 DMVVYTSDG----TTLFETVPRDINFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSA 266
              VY  +G      +       ++F   +            ++ +    + +++   S+
Sbjct: 242 TYDVYVMNGSAKVYLVQGRNAASVSFPDGSDVDGDGVKEMPPASGVNALNIGITAVSFSS 301

Query: 267 VPKGKIKALLQIRD--------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
           +P GK++ L++                  + P   + LD++A      F+          
Sbjct: 302 LPNGKLRGLIEGYGYQTGTDASGQPIVKGLYPDMLSNLDKLAYTFGTVFNAVHQQGYGLN 361

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                   DGI  +              +    +  +   + G+ +              
Sbjct: 362 GSTKRPFFDGIGAVSGAAKTIKLAADIDDLANIAASTKSGETGNGNNAINLANVRSLLLS 421

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           +      D  +       +    ++ T+    +  IG L  +   ++ +   S+ +   +
Sbjct: 422 NATVSLQDGIS--VNLASLNLPLSSGTVETNYQGWIGQLGVDGEQANRMKTNSETLRQSV 479

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            E   +   V+L EE+  ++K + +YN + + I   D+ML  L+ G+
Sbjct: 480 EEKRQSVSSVSLDEEMMNMVKFQHAYNAAARQITVIDEMLDKLINGM 526


>gi|146296674|ref|YP_001180445.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410250|gb|ABP67254.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 525

 Score =  246 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/538 (15%), Positives = 170/538 (31%), Gaps = 81/538 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS       A+       +       N+ NA    Y R+                     
Sbjct: 1   MS-FYGLEIARTGIYVNRKGLEVTSHNVANASTPGYTRQVLNVKSIPPSNRVGIYDPKFQ 59

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGMGADVQSLVQIRDMFLDMQYRNEYSRQGEYEIKADNLNFIEAIF-NEPSDTGLSAVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   SL+  SKN     +   V   A+ +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 QFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKILEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+II  +     +   +V  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIIDTTAYEDKDGRFIVQIAGGE 238

Query: 226 TLFETV------------------PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQ 263
           TL                        +      N     S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSNGLPTGFNPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299
              V  G++K LL +RD +                        +P + N+L+E A+ LI 
Sbjct: 299 VLNVKSGELKGLLDMRDGIGGLNEDIVVNGQPVDVPNKNSFTGIPYYLNRLNEFAQKLIE 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+E      +              +         +  I V+    ++ + +     V+ 
Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVSQTFFYARYIKVSDAIMNDLNNIATTYDVNN 415

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N               D             I       ++ ++ I  L  +   + 
Sbjct: 416 LPGGN---------------DLVVDMLRLRNDTSIFKEGRFEDFLKSLISNLGVDSQGAK 460

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +     +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML  ++ 
Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518


>gi|56421672|ref|YP_148990.1| flagellar hook-associated protein FlgK [Geobacillus kaustophilus
           HTA426]
 gi|56381514|dbj|BAD77422.1| flagellar hook-associated protein 1 (HAP1) [Geobacillus
           kaustophilus HTA426]
          Length = 531

 Score =  246 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/527 (13%), Positives = 169/527 (32%), Gaps = 52/527 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+           +   NI NA+ + Y R+                      
Sbjct: 3   STFHGLEAARRAMMAQQAALYTTGHNIANANTEGYTRQRVQLKATPPFPTPGLNRPNIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      +S +G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVEASSVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   +L+  S +   +     V      VV+ F+  +  + +IR D   +I   ++ + 
Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLAQIRTDLGTQIGTTVTEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L++++ +N+ I     + +  +D  D+RD L+ ++S+ + I           +  ++G
Sbjct: 182 SLLNQISALNERIAEIEPNGYLPNDLYDERDRLIDQLSQYMEIGVEKHPTGGNALPMAEG 241

Query: 225 T---------------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
           T                      +  +   D++ + +         N + + G  VS + 
Sbjct: 242 TYDVYVMNGSAKVYLVQGRTASVVSFSDGSDVDGDGVKEMPPDLGINTLDVSGTTVSFSS 301

Query: 264 -----------GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                      G     G   +   I   + P     LD++A      F++         
Sbjct: 302 LPNGKLRGLIEGYGYQTGTDASGQPIVKGLYPDMLANLDKLAYTFGKVFNDVHQQGYGLN 361

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                   DGI  +              +    +  +   + G+ +              
Sbjct: 362 GSTNHPFFDGIGAVSGAAKTIKLAADIDDLANIAASTKSGETGNGNNAINLANVRSLLLS 421

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           +      D  +       +    ++ T+    +  IG L  +   ++ +   S+++   +
Sbjct: 422 NATVSLQDGIS--VNLASLNLPLSSGTVETNYQGWIGQLGVDGEQANRMKSNSEILRQSV 479

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            E   +   V+L EE+  +IK + +YN + + I   D+ML  L+ G+
Sbjct: 480 EEKRQSVSSVSLDEEMMNMIKFQHAYNAAARQITVIDEMLDKLINGM 526


>gi|39998134|ref|NP_954085.1| flagellar hook-associated protein FlgK [Geobacter sulfurreducens
           PCA]
 gi|39985080|gb|AAR36435.1| flagellar hook-associated protein FlgK [Geobacter sulfurreducens
           PCA]
          Length = 477

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/495 (15%), Positives = 178/495 (35%), Gaps = 33/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+L++ + A++              NI N +   Y ++ T+ T +             V
Sbjct: 1   MSILSLLDIAKSGITAQRLALEVTSENITNVNTPGYSKQTTVFTTATVSQERGFPLGNGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +    +     L + ++  G    + +     E +  ++   +     +     +
Sbjct: 61  RVAEIQRAYDDFLQMQLKSENTTKGWSDTVLASMTRAEQLF-NEFTTDGLGKSLQDFFSA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + N       + ++   +++   F      +  IR +A++ +E   +++   L ++
Sbjct: 120 WQDLTANPQGQPERQAILARGQQLADQFKRVNSYLNDIRTEANQSLEGVTADVNDKLRKI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ IK        A++  DQRD+ +++++E +GI+ + + +  + V  S G  L   
Sbjct: 180 ASLNEQIKQIEVQGARANELRDQRDLAVRQLAEKVGITYMEQTDGTLNVSLSLGQPLVLG 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPI 285
               +   + ++             G   + +  S        +G++   LQ+RDS+V  
Sbjct: 240 KDAAVLSLQPDAANSGFYRIYSTAPGGKTAVDISSIVGGPGNGQGEMGGTLQVRDSLVNG 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           F   LDE+A  L    +             GL                   T+       
Sbjct: 300 FLADLDELAYTLATEVNAVHSSGFGLTGSTGLDFFS------------TPATMAGYSGLG 347

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                + +   ++           G           F+K            N+TL  +  
Sbjct: 348 GISVAISNSNDIAAANADPSVGGTGNNTNAKDIASLFDKILPLS-----GGNMTLGGFYN 402

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +G +  +  ++      S+ V   +     +  GV+L EEL+ LIK ++++  + KLI
Sbjct: 403 SLVGKVGVSVQNAERSATLSEGVLKQLDNLRESQSGVSLDEELANLIKYQKAFEGAAKLI 462

Query: 466 MFTDKMLQTLLEGVK 480
               +M+  +L  V+
Sbjct: 463 NTGTEMMDVILGLVR 477


>gi|312135425|ref|YP_004002763.1| flagellar hook-associated protein flgk [Caldicellulosiruptor
           owensensis OL]
 gi|311775476|gb|ADQ04963.1| flagellar hook-associated protein FlgK [Caldicellulosiruptor
           owensensis OL]
          Length = 525

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/538 (14%), Positives = 167/538 (31%), Gaps = 81/538 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+       +       N+ NA    Y R+      +              
Sbjct: 1   MS-FYGLEIARTGIFVNRKGLEVTSHNVANASTPGYTRQVLNVKSNPPSAKVGFYSPKFQ 59

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 V +         D       S  G+  +        E +  ++  +   +  I 
Sbjct: 60  VGMGADVQSLEQIRNMFLDMQYRNEYSRQGEYEIKADNLNFIESIF-NEPSDTGLSAVID 118

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
               SL+  SKN     +   V   A+ +    +   ++++ ++++ + ++  +I  +  
Sbjct: 119 HFFSSLQELSKNPESLTVRALVRQRAQALTDAIHKMYKQLEDLQSELNDQVYDKIMEINS 178

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S++  +N  I         A+D  DQR++L+ K+S+II  +     +   VV  + G 
Sbjct: 179 IASQIADLNQQIFVLELRGEKANDLRDQRNLLVDKLSKIIDTTAYEDKDGRFVVQIAGGE 238

Query: 226 TLFETVPRDINFEKMN------------------SYTVTSESNPIFIDG----VVVSSNQ 263
           TL             +                       S+ N   + G    +   + Q
Sbjct: 239 TLVNHFTVYELETDKSKIMRKSGFDSSGQPTGFKPDDPLSQQNLYDVPGLFVVMWKDTGQ 298

Query: 264 GSAVPKGKIKALLQIRDSV------------------------VPIFQNQLDEMARVLIG 299
              +  G++K LL +RD V                        +  + N+L+E A+ LI 
Sbjct: 299 VLNIKSGELKGLLDVRDGVGGLDEDLTVNGQPVDVPNKNSYPGISYYLNRLNEFAKKLIE 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+E      +              +         +  I V+    ++ + +      S 
Sbjct: 359 KFNELHTQGWSLNGQNTGINFF---EPPVGQTFFYARYIKVSDAIMNDLNNIATTYDASS 415

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N               D             I       ++ ++ I  L  +   + 
Sbjct: 416 LPGGN---------------DLVVDMLKLRNDTSIFKEGRFEDFLKSLISNLGVDSQGAK 460

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +     +V+   +        GV++ EE++ LIK +  +  S ++I   D+ML  ++ 
Sbjct: 461 NFAENQKVMVTQLDNRRQAVSGVSIDEEMTNLIKYQHGFQASARMINAFDEMLDVIVN 518


>gi|269836594|ref|YP_003318822.1| flagellar hook-associated protein FlgK [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785857|gb|ACZ38000.1| flagellar hook-associated protein FlgK [Sphaerobacter thermophilus
           DSM 20745]
          Length = 471

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/492 (14%), Positives = 157/492 (31%), Gaps = 46/492 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
                           +       NI NA+   + R+      +                
Sbjct: 4   TFGRLETLLRALQTQQRAVDVTNHNIANANTPGFSRQVAALGTTPPYTIPTLSAPRVGQI 63

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              VTV++ +   +   D      +  +G      +     + +  ++         + K
Sbjct: 64  GTGVTVLSVQRIREGFLDVQYRTQAEQLGMSEAKTAIYRTLDTLL-NEPSETGLGAALDK 122

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                E  +         + +I+ A+ +   FN    +V + R +A   + LE   + + 
Sbjct: 123 FWAGWEEVANRPEHVPTRQALIEVAQTLAHRFNAMRNQVLQQREEAAHRLALEADRINQI 182

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             ++  +N  I+   A     +D +D RD LL +++  IG +T V  +  + VY + G  
Sbjct: 183 AQQIASLNAQIRGVLAMGQQPNDLMDTRDQLLDQLARSIGTTTTVTPDGAINVYIA-GHA 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L +    D      +  T  +E          VS  +   V  G    L+++ +  +P  
Sbjct: 242 LVDRDQTDALRVTFDPVTGNAELT-------WVSDGRSVDVTLGAAAGLIEMHNVALPGI 294

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              L+ +   L+   + +        +           ++           + V P   +
Sbjct: 295 LGDLEALRDTLVAEVNARHQAGFGLTDTGPTPPGRDFFEILPN------GDLRVLPALTA 348

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +PS L    +       ++               +     + + +   +   T+  +   
Sbjct: 349 DPSLLAVASAPGVPGNADI---------------ALAIAGLAEELTMGSGTATINTFYET 393

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            I  + +    +    +  + +   I        GV+L EE   LIK + +Y  + + + 
Sbjct: 394 FIARVGREAERAEADRVNQESLTRAIDRRRQEVAGVSLDEEAVNLIKYQHAYQAAARAMT 453

Query: 467 FTDKMLQTLLEG 478
             D+ML  L+ G
Sbjct: 454 VVDEMLDKLING 465


>gi|298507071|gb|ADI85794.1| flagellar hook-associated protein FlgK [Geobacter sulfurreducens
           KN400]
          Length = 477

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/495 (15%), Positives = 178/495 (35%), Gaps = 33/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+L++ + A++              NI N +   Y ++ T+ T +             V
Sbjct: 1   MSILSLLDIAKSGITAQRLALEVTSENITNVNTPGYSKQTTVFTTATVSQERGFPLGNGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +    +     L + ++  G    + +     E +  ++   +     +     +
Sbjct: 61  RVAEIQRAYDDFLQMQLKSENTTKGWSDTVLASMTRAEQLF-NEFTTDGLGKSLQDFFSA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + N       + ++   +++   F      +  IR +A++ +E   +++   L ++
Sbjct: 120 WQDLTANPQGQPERQAILARGQQLADQFKRVNSYLNDIRTEANQSLEGVTADVNDKLRKI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ IK        A++  DQRD+ +++++E +GI+ + + +  + V  S G  L   
Sbjct: 180 ASLNEQIKQIEVQGARANELRDQRDLAVRQLAEKVGITYMEQTDGTLNVSLSLGQPLVLG 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPI 285
               +   + ++             G   + +  S        +G++   LQ+RDS+V  
Sbjct: 240 KDAAVLSLQPDAANSGFYRIYSTAPGGKTAVHISSIVGGPGNGQGEMGGTLQVRDSLVNG 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           F   LDE+A  L    +             GL                   T+       
Sbjct: 300 FLADLDELAYTLATEVNAVHSSGFGLTGSTGLDFFS------------TPATMAGYSGLG 347

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                + +   ++           G           F+K            N+TL  +  
Sbjct: 348 GISVAISNSNDIAAANADPSVVGTGNNTNAKDIASLFDKILPLS-----GGNMTLGGFYN 402

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +G +  +  ++      S+ V   +     +  GV+L EEL+ LIK ++++  + KLI
Sbjct: 403 SLVGKVGVSVQNAERSATLSEGVLKQLDNLRESQSGVSLDEELANLIKYQKAFEGAAKLI 462

Query: 466 MFTDKMLQTLLEGVK 480
               +M+  +L  V+
Sbjct: 463 NTGTEMMDVILGLVR 477


>gi|138896699|ref|YP_001127152.1| flagellar hook-associated protein FlgK [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268212|gb|ABO68407.1| Flagellar hook-associated protein 1 [Geobacillus
           thermodenitrificans NG80-2]
          Length = 540

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/536 (14%), Positives = 177/536 (33%), Gaps = 61/536 (11%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+           +   NI NA+ + Y R+                      
Sbjct: 3   STFHGLEAARRAMMAQQAALYTTGHNIANANTEGYTRQRVQLKATPPFPTPGLNRPNIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      +S +G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVEAASVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   +L+  S +   +     V      VV+ F+  +  + +I+ D   +I + ++ + 
Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLSQIQTDIGTQIGVTVTQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               +++ +N  I     + +  +D  D+RD L+ ++S++I +             T++G
Sbjct: 182 SLAKQISELNKQIASVEPNGYLPNDLYDERDRLIDELSKLINVQVEKHPTGGNAPATAEG 241

Query: 225 T-----------------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           T                       +  +    D + E +      +    + + G  VS 
Sbjct: 242 TYDIYFLNGNEKVYLVQGGEFQSISFPDGQDVDGDKEHIKEMPPATGVTELQVGGTSVSF 301

Query: 262 NQGS--AVPKGKIKALLQIR--------------DSVVPIFQNQLDEMARVLIGSFSEKD 305
              +    P GK++ L++                  + P   N LD++A      F+   
Sbjct: 302 TSNNQVTFPMGKLRGLIEAYGYVSGQDSSGQPIVTGIYPDMLNNLDKLAYTFGKLFNAVH 361

Query: 306 PIAGNSENVPGLFIADG--IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                     G+   DG   +         +S  I       ++    + G   +   L 
Sbjct: 362 EKGYGLNGETGVSFFDGLGQEAKGAAKTIRLSADIDDLANIAASTEEGKPGNGNNAINLA 421

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           NV ++    + I+    S         +   +   T+    +  IG L  +   ++ +  
Sbjct: 422 NVGSMLLSSNTISLIGTSATIQMSDLQLPLTSG--TIQTNYQGWIGKLGVDGQQANRMKN 479

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            S V+   + E   +   V+L EE+  +IK + +YN + + I   D+ML  ++ G+
Sbjct: 480 NSDVLRQSVEERRQSVSSVSLDEEMMNMIKFQHAYNAAARQITVVDEMLDKIINGM 535


>gi|297531376|ref|YP_003672651.1| flagellar hook-associated protein FlgK [Geobacillus sp. C56-T3]
 gi|297254628|gb|ADI28074.1| flagellar hook-associated protein FlgK [Geobacillus sp. C56-T3]
          Length = 531

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/527 (14%), Positives = 170/527 (32%), Gaps = 52/527 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+           +   NI NA+ + Y R+                      
Sbjct: 3   STFHGLEAARRGMMAQQAALYTTSHNIANANTEGYTRQRVQLRPTSPFPTPGLNRPNIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      +S +G         +  E +  ++  ++      
Sbjct: 63  QMGTGVEASSVERVREYFLDIQYRGENSKLGYWEARADAVSKMEDIM-NEPSDSGLAKTT 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   +L+  S +   +     V      VV+ F+  +  + +IR D   +I   ++ + 
Sbjct: 122 DQFWQALQDLSTHPENEGARSVVRQRGLAVVETFHYLSNSLTQIRTDIGTQIGTTVTEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--------------- 209
             L++++ +N+ I     + +  +D  D+RD L+ ++S+ + I                 
Sbjct: 182 SLLNQISALNERIAEIEPNGYLPNDLYDERDRLVDQLSQYMEIGVEKHPTGGNALPMAEG 241

Query: 210 ---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
              +   N    VY   G T       D +    +       ++ +    V  ++   S+
Sbjct: 242 TYDVYVMNGSAKVYLVQGRTASVVSFSDGSDVDGDGVKEMPPASGVNTLDVSGTTVSFSS 301

Query: 267 VPKGKIKALLQIRD--------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
           +P GK++ L++                  + P     LD++A      F++         
Sbjct: 302 LPNGKLRGLIEGYGYQTGTDASGQPIVKGLYPDMLANLDKLAYTFGTVFNDVHQQGYGLN 361

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                   DGI  +              +    +  +   + G+ +              
Sbjct: 362 GSTNHPFFDGISAVSGAAKTIKLAADIDDLANIAASTKSGETGNGNNAINLANVRSLLLS 421

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           +      D  +       +    ++ T+    +  IG L  +   ++ +   S+ +   +
Sbjct: 422 NATVSLQDGIS--VNLASLNLPLSSGTVETNYQGWIGQLGVDGEQANRMKTNSETLRQSV 479

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            E   +   V+L EE+  +IK + +YN + + I   D+ML  L+ G+
Sbjct: 480 EEKRQSVSSVSLDEEMMNMIKYQHAYNAAARQITVIDEMLDKLINGM 526


>gi|78044505|ref|YP_359818.1| flagellar hook-associated protein FlgK [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996620|gb|ABB15519.1| flagellar hook-associated protein 1 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 473

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/491 (14%), Positives = 171/491 (34%), Gaps = 44/491 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------------ISPE 48
               A +              NI NA+   Y R+                          
Sbjct: 5   SLETALSSLRAQQLALDITSHNIANANTPGYTRQRVNFAPNTPFPVPSLFAPMQPGQVGT 64

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V +         D         +G            +++  ++  +      + +  
Sbjct: 65  GVVVASIERVRDTFMDIEYRKELMNLGYWETRFDVLDKIQLI-INEPSDTGLNQLMDRFW 123

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++ +  SKN         V   A+ +V+ FN    ++  ++ D D  ++  +  +     
Sbjct: 124 NAWQELSKNPENLATRAVVQQTAKALVETFNHLRGQLDSLQNDFDFAVQANVEEINSIAR 183

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  +ND I      K +A+D +DQRD LL K++++I  + I   +  + +       + 
Sbjct: 184 QIRDINDQIFKTNIVKFNANDLMDQRDELLNKLAKLIDFTLIDNQDGTISIDIGGKKLVD 243

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                      ++S  V   ++  F       +       KG++ A L  RD  V   ++
Sbjct: 244 GL--------TVDSLKVEKNASGFFEVFWSDDTPVTITSQKGELAANLAARDVDVQAMKD 295

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            LD +A+ LI   +              +  +       N      ++TI ++P+  +N 
Sbjct: 296 YLDSLAQTLIIETNNLHTQGY-------VLGSPMTNPGYNFFDGTDAKTIALSPEVSANL 348

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + +                  G  ++        +K  +  P +      T  ++ R  I
Sbjct: 349 NNIA----------AAKTPSPGDGEIALAIAQLKDKLTMTLPGSTTP-TATFNDFYRTII 397

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             L  +  ++  ++   Q++  +++     + GV++ EE++ +I  + +Y+ + +++   
Sbjct: 398 SRLGVDAQEAERMYQNEQLLTKNLNNKRMESGGVSIDEEMANMILYQNAYSAAARIVTAI 457

Query: 469 DKMLQTLLEGV 479
           D+M+  ++  +
Sbjct: 458 DEMMDIVINRM 468


>gi|148266109|ref|YP_001232815.1| flagellar hook-associated protein FlgK [Geobacter uraniireducens
           Rf4]
 gi|146399609|gb|ABQ28242.1| flagellar hook-associated protein FlgK [Geobacter uraniireducens
           Rf4]
          Length = 478

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 86/495 (17%), Positives = 181/495 (36%), Gaps = 32/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+ ++    +   N           NI N +   Y R+ T+   +             V
Sbjct: 1   MSINSLLETGRTALNAQKLALEVTGENITNVNTTGYSRQTTILETAPTTLERGFPLGSGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +          +   ++  GQ +   S     + +  ++   +     +     S
Sbjct: 61  KVAAVQRSYDGFLQTQIMGQNATYGQGKTSNSALQRVQQLF-NEFTTDGLGVSLQNFFKS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + N       + V+   +++V NF+     +  +++D +K +E ++S++   L+++
Sbjct: 120 WQDLTVNPQGAPERQAVLSQGQQLVDNFHRINSNLNDVKSDMNKSLEGQVSDINDTLNQI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  IK        A++  D+RD+LL+++S+ +GIS + + +  + V  + G +L   
Sbjct: 180 ATLNLQIKQIEVQSGPANEMRDKRDLLLRQLSQKVGISFVEQPDGMVDVSLTSGQSLVVG 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-----VPKGKIKALLQIRDSVVPI 285
                     N+         +   G   + N  +        +G+I   L +RD++V  
Sbjct: 240 KDAAALSLLPNAANSGFYDILLTPPGGGPAVNATAFIGGPGNTQGEIGGALLVRDTMVNN 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           + ++LDE+A  L    +                                           
Sbjct: 300 YLSELDELASTLASEVNGLHSAGYGLTAASTGLDFFAPPAAVAGYSGQG--------GIG 351

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N + + D  +       N          I    D F        +A    NVTL  +  
Sbjct: 352 VNIAAISDVAAADADPTVNGTGNNKNAQSIASVYDKF--------LAMSAGNVTLEGFYD 403

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +G +  +  ++     +S  +   ++    +  GV+L EEL+ LIK +++Y  + KLI
Sbjct: 404 SLVGKVGVDVQNAGRAESQSDGILKQLNNMRESASGVSLDEELANLIKYQKAYEGAAKLI 463

Query: 466 MFTDKMLQTLLEGVK 480
               +ML T++  VK
Sbjct: 464 NVGSEMLDTVINLVK 478


>gi|212640402|ref|YP_002316922.1| flagellar hook-associated protein FlgK [Anoxybacillus flavithermus
           WK1]
 gi|212561882|gb|ACJ34937.1| Flagellar hook-associated protein [Anoxybacillus flavithermus WK1]
          Length = 513

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 64/507 (12%), Positives = 142/507 (28%), Gaps = 30/507 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S        +       Q       NI NA+   Y R+                      
Sbjct: 3   STFHGLETVRRGMTAQQQALYVTGHNIANANTPGYSRQRVNFEQTPPYPFASKNRPVMPG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   T +   +   D      +   G            E +  ++  +      +
Sbjct: 63  QMGTGVEGGTVQRMREQFLDVQYRGENMKYGYWHTRAEALYKMEEIM-NEPSDEGLAKTL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   SL+  + N S       V      V + F+  +  ++ IR D   E+++ +  + 
Sbjct: 122 DRFWQSLQDLAVNPSNSGARSVVRQRGMAVAETFHYLSSSLKSIRDDLKNELDVTVKAVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               +L  +N  I       +  +D  D+R+ LL ++S+ + +     ++    +  ++G
Sbjct: 182 SLARQLNDINKQISEVEVHGYLPNDLYDERNRLLDELSQYVNVKVTAVSSGGSSLKIAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
               E V R  +                       +  +   +    +          + 
Sbjct: 242 RFTVELVDRTGSTVIGTLVDGRLGQVNELQLSYQDNVTKTGPIVGFSLGNTPFSTFEHLK 301

Query: 285 IFQNQLDEMARVLIGSFSEKDPIA----GNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +                     S             +  +     ++E    
Sbjct: 302 ENGKVGSLLYSYGYSEDGGTTTKGLYPEMLSNLNAMAKAFADTFNTVHSNGWSVAEIKNN 361

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------ 394
                + P F  D    +  F           ++                +A +      
Sbjct: 362 ATAPSAKPFFTYDPNDPAGTFDIAQMIKDSLDNIAASATGQIGDGSNAQALAEVKNGTMN 421

Query: 395 --NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 T+  +  + IG +  N  ++  L   S+V+   + E       V+L EE+  ++
Sbjct: 422 IAGNTTTIQNFYESLIGQMAVNAQEAKRLSENSEVLRQSVDERRMAVSSVSLDEEMMNMM 481

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K + +YN S ++I   D+ML  ++  +
Sbjct: 482 KFQHAYNASARMITMIDQMLDKIINNM 508


>gi|239828340|ref|YP_002950964.1| flagellar hook-associated protein FlgK [Geobacillus sp. WCH70]
 gi|239808633|gb|ACS25698.1| flagellar hook-associated protein FlgK [Geobacillus sp. WCH70]
          Length = 541

 Score =  243 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 76/535 (14%), Positives = 167/535 (31%), Gaps = 58/535 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+               N+ NA+   Y R+                      
Sbjct: 3   STFHGLEAAKRAMMTQQAALYVTGHNVANANTPGYTRQRVNFVQTEPFPSPGLNRPQIPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      ++ +G         A  E +  ++  +N     +
Sbjct: 63  QMGTGVKAGSVERVREYFLDIQYRGENNKLGYWEARADAIAKMEDIM-NEPSDNGLAKTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   +L+  S N   +     V      VV+ F+  +  + +I+ D   +I + I+ + 
Sbjct: 122 DQFWQALQDLSVNPENEGARSVVRQRGLAVVETFHYLSNSLSQIQTDIGTQIGVTITQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               +++ +N  I     + +  +D  D+RD L+ ++S++I +             T++G
Sbjct: 182 SLAKQISEINQQIASVEPNGYLPNDLYDERDRLIDELSKLINVQVEKHPTGGNAPATAEG 241

Query: 225 T-----------------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           T                       +  +    D + E +      +    + + G  +S 
Sbjct: 242 TYDIYFLNGNEKVYLVQGGDFQSISFPDGQDVDGDKEYIKEMPPVTGVTELQVGGTSISF 301

Query: 262 NQGS---AVPKGKIKALLQIRD--------------SVVPIFQNQLDEMARVLIGSFSEK 304
              +     P GK++ L++                  + P   N LD++A      F+  
Sbjct: 302 TDNNNQVTFPMGKLRGLIEAYGYVSGQDSNGQPIVAGIYPDMLNNLDKLAYTFGKLFNAV 361

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                      G+   DG+        + I  +  ++       S            +  
Sbjct: 362 HEKGYGLNGETGVSFFDGLGQEAKGAAKTIRLSADIDDLANIAASTEEGKPGNGNNAINL 421

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
               +                     +    T+ T+    +  IG L  +   ++ +   
Sbjct: 422 ANVGSMLLSADTVSLIGTTNTIQISTLNLPLTSGTIQTNYQGWIGKLGVDGQQANRMKNN 481

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           S V+   + E   +   V+L EE+  +IK + +YN + + I   D+ML  ++ G+
Sbjct: 482 SDVLRQSVEERRQSVSSVSLDEEMMNMIKFQHAYNAAARQITVVDEMLDKIINGM 536


>gi|121535557|ref|ZP_01667365.1| flagellar hook-associated protein FlgK [Thermosinus carboxydivorans
           Nor1]
 gi|121305885|gb|EAX46819.1| flagellar hook-associated protein FlgK [Thermosinus carboxydivorans
           Nor1]
          Length = 494

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 176/502 (35%), Gaps = 41/502 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  +  N              ++  NI NA+ + Y R+      +               
Sbjct: 3   STFSGLNALTRGIYANQIALDTVGHNISNANTEGYSRQLASIVSTRPETLYGEYGPMQLG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               V        +  D+     +S++G         +  E +   +         ++  
Sbjct: 63  TGAAVEAVTRARDSFIDRQFWQENSSLGYGETATEILSKIEGVFR-EPSEYGLQTVLNNF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + ++ S N S+D     +     E+V     +A++++ + AD +  +E++++ + +  
Sbjct: 122 WQAWQTLSTNASDDGARAALQQRGVELVNAIGHAAQQLKDMVADINSVVEIKVNKVNQIT 181

Query: 168 SELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           SE+  +N  I        D A+D  D+RD+L+ ++S ++G++       + +V T +   
Sbjct: 182 SEILSLNKQIALIETGGRDHANDLRDRRDLLVDQLSTLVGVTVTEDKYGNYIVRTGNVLL 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK---------GKIKALLQ 277
           +      ++            E   +   G V S ++               G+IK LL 
Sbjct: 242 VDGNTRNELGVVSQKDSDYGYEVYNVVYGGTVPSGSRFMQGGTAVVFPEGNKGEIKGLLA 301

Query: 278 IRDSV-VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           +RD+  V  + ++L  M++  +  F+          +                      +
Sbjct: 302 MRDATGVKGYLDKLATMSQFFLTDFNSLHRDGYGLADTATGNDFFVTGGASPATKAEYLQ 361

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                       S + D   ++ +    +   +G   +          +   D       
Sbjct: 362 AFT--------SSTIVDTALIAARSDVAMGVASGDHAVALSNLLKTVTSPTLD------- 406

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
           N TL  Y    IG L     D+  L    + + + I     +  GVN+ EE++ +I+ +Q
Sbjct: 407 NATLDSYYNAFIGKLGVQSQDAKRLAENQKTLVSQIRNWRESVAGVNMDEEMTNMIRYQQ 466

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
            YN + +++   D+ML  L+ G
Sbjct: 467 GYNAAARVVTAIDEMLDKLING 488


>gi|317121043|ref|YP_004101046.1| flagellar hook-associated protein FlgK [Thermaerobacter marianensis
           DSM 12885]
 gi|315591023|gb|ADU50319.1| flagellar hook-associated protein FlgK [Thermaerobacter marianensis
           DSM 12885]
          Length = 520

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/526 (13%), Positives = 163/526 (30%), Gaps = 65/526 (12%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44
           S       A+       +       NI NA+ + Y R+    +                 
Sbjct: 3   STFFGLELARLGLWAQQRALDVTGHNIANANTEGYSRQVARLSPTPAYAPPSLAMAAEAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   +       D+      + +G+ ++     A  E +   +  +      +
Sbjct: 63  QVGTGVQVAEIQRVRDLFLDRQARDLKAHLGRWQVRSQTLAELETILG-EPSDAGLARAL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   D+L + +            I  A  +++ F T+ R++  +  + D  +   +  + 
Sbjct: 122 ADFWDALATVANRPDSLPARTAAIQQAHTLLERFQTADRQLADLADNLDASLVARVDRVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD- 223
           + L ++  ++  I+  TA+    +D LD+RD LL+++  ++ +    R +  + V  +  
Sbjct: 182 QILVQMADLHRRIRVATAAGQTPNDLLDERDRLLEELGTLLPVRVTERPDGTVRVEVAGL 241

Query: 224 ----GTTLFE----------------------------TVPRDINFEKMNSYTVTSESNP 251
               G  +                                          +    S    
Sbjct: 242 PLVDGQVVHRLAVQEEPAGGAGGGGTGSGTSGGLVVRIYWDGTATVPASATPQAVSGPGA 301

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
                        + +  G+I  LL+ RD +V   +  L  +   L  + +         
Sbjct: 302 SGGAAAAFIPLDDTVLDGGEIDGLLEARDRLVAGLRQDLKALFFALADAVNAVHRQGYGL 361

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
            + P           D  +                + S L+      +         A  
Sbjct: 362 NDGPPAGSGQQGAGRDLFVV--------------GSGSDLQQVVVNPELDDPANLAAAQM 407

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
           P       ++     +      +  + +  +Y  + +  L      + +    +Q++ + 
Sbjct: 408 PGAPGDGRNALAMVQLRHAPLNLPGSPSAQDYLESVVAGLGIAGRQAEEGQRTAQLLLDQ 467

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++    +  GV+L EE++ LI+ + +Y  + +L+   D ML  L+E
Sbjct: 468 VAAQRESVRGVSLDEEMTQLIRYQHAYAAAARLVTAVDTMLGILIE 513


>gi|288554150|ref|YP_003426085.1| flagellar hook-associated protein FlgK [Bacillus pseudofirmus OF4]
 gi|288545310|gb|ADC49193.1| flagellar hook-associated protein FlgK [Bacillus pseudofirmus OF4]
          Length = 523

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/518 (15%), Positives = 173/518 (33%), Gaps = 42/518 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+           +   NI NA+   Y R+    T +               
Sbjct: 3   STFHGLETARRAMMTQQYALHTTGHNIANANTPGYSRQRVNFTQAEPYPSIGMNRPMLPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                    + +   ++  D       S  G      +     E +  ++   +     +
Sbjct: 63  HLGTGTKAGSIQRVREHFLDIQFRNEQSKTGYWSTRHTGLQKMEDIL-NEPSTDGIASTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +  ++L+  S +  +      V +    V + FN  +  +  I+ D   EI ++     
Sbjct: 122 DRFWNALQDLSTDPQDSGARSVVRERGVAVAEVFNYVSNSLTIIQKDLKGEIGVQEKAFN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  +N+ I       +  +D  D+RD L+ ++S+ + +      +       ++G
Sbjct: 182 SILDQIKNINEEISKVEPHGYVPNDLYDRRDNLIDELSQYVNVKIDRIESGGNASSVAEG 241

Query: 225 ---------------TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                           TL +     +N+  ++      E     +     S +      +
Sbjct: 242 AYNVRLVDSDGKDLGITLIDGANHSVNYLSIDFAGTNGEGLVENLSFGGNSMSVAEFESR 301

Query: 270 GKIKALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           G IKA+++            V P   + LD+M    +  F++      N E         
Sbjct: 302 GSIKAIIESFGYMDGGAEKGVYPEMLHDLDQMVATFVEEFNKVHRAGWNLE-DIEAGEKG 360

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
              +       G S T        S      D  + S K       + G   + +     
Sbjct: 361 PSLNFFTYSGTGASPTSDQPAGAASRLQLSADIMTSSNKIAAAKPGVDGVAFVGSGANAL 420

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
              N     +    TN ++  + ++ IG +  + ++++ +   + ++ N + E   +   
Sbjct: 421 ELANVKDKTLNYGGTNTSVQSFYQSVIGDMAVHTNEANRMMRNADMLRNTVEERRQSVSS 480

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           V+L EE++ +IK + +YN + + I   D+ML  ++ G+
Sbjct: 481 VSLDEEMTDMIKFQHAYNAAARNITMVDEMLDRIINGL 518


>gi|319650643|ref|ZP_08004783.1| flagellar hook-associated protein K [Bacillus sp. 2_A_57_CT2]
 gi|317397824|gb|EFV78522.1| flagellar hook-associated protein K [Bacillus sp. 2_A_57_CT2]
          Length = 518

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/522 (14%), Positives = 166/522 (31%), Gaps = 55/522 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+           +   NI NA+   Y R+    +                 
Sbjct: 3   STFMGLETARRGMFTQQSALYTTGHNISNANTPGYTRQRINFSQTEPYPGAGLNRPQIPG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +   +   D      S+ +G    +       E +  ++   N     +
Sbjct: 63  QMGTGVEAGSVQRIREGFLDMQYRTESTKMGYYGAMSESLTKMEEIM-NEPSENGLHSTL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            K  ++++  S +         V    + V    N     + +++ D   +I ++   + 
Sbjct: 122 EKFWNAIQDLSSHTENTGARDVVAATGQMVADTLNYYYNSLTRVQEDIGSQINVKADEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV------------- 211
             ++++  +N  I       +  +D  DQRDVL+  +S+++ +                 
Sbjct: 182 AIVAQIDNLNKQISSVEPHGYLPNDLYDQRDVLVDNLSKLVNVKVSKVIPDNYGNAQKIA 241

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG------VVVSSNQGS 265
               ++ +   DG +    +      ++     V         DG      +   +    
Sbjct: 242 DGLYNIEIVQQDGKSFEPPIQLVPVTKEAGIMDVNKLEVEKSSDGFISGLKIGSETINDF 301

Query: 266 AVPKGKIKALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
           +   G++  L++            V P   ++L++M       F++              
Sbjct: 302 SKLSGELAGLVKSFGYESGGEAKGVYPEMLDKLNKMTEAFAKEFNKIHREGFPLGADEPS 361

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
            +        N       ++I V  +   + S +  G +          +      L + 
Sbjct: 362 GLDFFEFTAGNAA-----QSIKVKQEILDDSSKIAAGAASGAS-----GDNGNAQLLADL 411

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              SF+      P    N N +L  Y    IG L  +   +      S ++   + ++  
Sbjct: 412 RKKSFSSYESLSPEEKANLNGSLDSYYSGLIGRLGVDSQSAQKDLRNSAILAASVEQNRQ 471

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +   V+L EE++ +IK + +YN S + I   D+ML  ++ G+
Sbjct: 472 SVSAVSLDEEMTNMIKFQHAYNASARNITVVDEMLDKIINGM 513


>gi|85859203|ref|YP_461405.1| flagellar hook-associated protein 1 [Syntrophus aciditrophicus SB]
 gi|85722294|gb|ABC77237.1| flagellar hook-associated protein 1 [Syntrophus aciditrophicus SB]
          Length = 463

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 83/490 (16%), Positives = 183/490 (37%), Gaps = 38/490 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS++ + +  +   ++          NI N +   Y R+  + +               V
Sbjct: 2   MSIIGILDTTKLALSSFQAAIDITGSNISNVNTPGYSRQRPVFSSVGSIDVRAAKIKVGV 61

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V        N     ++  SS  G    L +     E++  D+   +     +++  ++
Sbjct: 62  EVSDVERIYNNFLRDQINERSSVTGYYEALSTSLESVEIIF-DETSGSGINGLLNQFWNA 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
               S N    +    +I +AE +  + N     ++ +R DA+  I+  +  +   +S +
Sbjct: 121 WSDVSNNPEGQVERDALISSAESLCASINDYGNALESVREDAENNIQETVVEINNLISSI 180

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             VN  I+   + + +++   D+RD  L+++   I  +  + ++  + V+  +G  L E 
Sbjct: 181 ADVNRKIREAGSEQGNSNILQDKRDEYLKELCSTINANYFIDSSGALNVFLPNGEPLVEK 240

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      +       + I   G   S +    +  GKI ALL +RD +V  +Q+ L
Sbjct: 241 EFSWQLRLSSETSETNPPYHHITKVGS--SDSLDEVITGGKIGALLDVRDMIVKNYQDNL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D  A  L+   +++     +     G    D        +                    
Sbjct: 299 DSFAAGLVTQINDQHHQGYDQYKNIGSDFFDPTATDSKSM-------------------- 338

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 V+ +   ++K +A    ++    ++   + + D  A +N   T   Y  + IG 
Sbjct: 339 -----RVNSELAADLKKIAASSSILGDGANAVQISALKDNEAAMNGIFTFNNYVASLIGK 393

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           + ++ +D+        +V + +        GV++ EE+  LI+ +  YN + +L    ++
Sbjct: 394 IGQDVADAKTNVEHQNIVMSQLDRQREGISGVSIDEEMMKLIQYQMGYNAAGRLCSIINE 453

Query: 471 MLQTLLEGVK 480
           ML TL+   +
Sbjct: 454 MLDTLINLGR 463


>gi|226225705|ref|YP_002759811.1| flagellar hook-associated protein 1 [Gemmatimonas aurantiaca T-27]
 gi|226088896|dbj|BAH37341.1| flagellar hook-associated protein 1 [Gemmatimonas aurantiaca T-27]
          Length = 482

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 72/487 (14%), Positives = 179/487 (36%), Gaps = 18/487 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +F+ A++   +      +I  N+ NA+   + R++ +   +             V V 
Sbjct: 3   SGLFSIARSALLSHQTALQTISHNVANAETPGFSRQEAVLAANTPVRLYNGNVGTGVHVA 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +   + D    + +   G   + +      E +   +      ++ + +  +S   
Sbjct: 63  TIQRKRDLLLDDNYRSANVLAGNSTMRRDLMQKVEDVFG-EPSETGMSNALDQFWNSWSD 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S   +       V     ++ Q FN    ++ + R    + ++  +  +    S++  +
Sbjct: 122 LSAQPNSLAARAVVQQRGRQLGQLFNDYDTQLTQQRTSNLELLDNTVGRINALASQVAEL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I     + H A+D  D RD+ L +++ + G   + + N  + V   + T +      
Sbjct: 182 NTRILASEGNGHVANDLRDMRDLRLDELANVAGTRVVNQPNGTVTVVIGNSTLVEGDTWN 241

Query: 234 DINFE-KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            ++ + +    T       + +   +  S    A   G++ A++++ +  +P  + +LD 
Sbjct: 242 KVSAQLEPPVPTPAVPLTDVPVKIRLGDSPDRLAPLDGQLSAIVKVLNEDIPATRGRLDA 301

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  ++ + +                 A G       +   +  +         + +   
Sbjct: 302 MASQIVTAVNTAHTAGYVFSGNTVPGTAAGNFFEAGTVTNPVRASNIKL-----DNAISA 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           D G ++     N     G    +     + +    +    G   + + + + R  +  L 
Sbjct: 357 DPGKIAASNDANGPTSNGTAQALAALRIA-DGTVTWTAPNGTTESGSFVGFFRGLVTRLG 415

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + + ++D    ++ +         +  GVN  EEL  +++V+QSY  + K+I   D+ML
Sbjct: 416 VDTASANDSAAVAENLVQQAEIRRQSVSGVNTDEELVNMLRVQQSYQAAAKMITAADEML 475

Query: 473 QTLLEGV 479
           +TL+  V
Sbjct: 476 KTLINLV 482


>gi|239834426|ref|ZP_04682754.1| flagellar hook-associated protein FlgK [Ochrobactrum intermedium
           LMG 3301]
 gi|239822489|gb|EEQ94058.1| flagellar hook-associated protein FlgK [Ochrobactrum intermedium
           LMG 3301]
          Length = 484

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 134/484 (27%), Positives = 240/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + +  NI  A++ +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSSNIARANDPDYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S      +L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EALFNRFIQSNSTASSSSILAGGLDRLSSLYSADNYSGSPSALIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   +++Q +R DAD+EI   ++N+   L++   VN  I   
Sbjct: 121 SALGDSVVSTAQSLANALNAGTKQIQSLRNDADREIADSVANINDLLAKFEKVNQEIVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T +  D  D++DQRD +L+++S  IGI+T++R +NDMV++  +G TLFET  R ++FE+ 
Sbjct: 181 TRANRDVSDYMDQRDAILKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVSFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                      + +DGV ++          G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 TVLAPGISGKAVLVDGVPLNHETFDQPYGTGRLSGLLQLRDQIAPQYQMQLDEIARNLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY----RSNPSFLRDGG 355
            F+E D     ++       A         +  GI+ +I V+  +      +   LRDGG
Sbjct: 301 MFAESDQTGVGADKTGLFSWAGSPDVPGAGMSAGIAGSIKVSSAFVASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +N++  AG+ + +    ++F++   FDP  G++ + +L++Y+ +SI WLE  R
Sbjct: 361 ANGPDYKYNIEGAAGFSERLRALNEAFSEPMAFDPATGLSASSSLIDYSASSISWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V      + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFSYNATVATQADAALSNANGVDMDTEMALLLDLEHSYQASSRVLTTISAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040201|gb|ACT56997.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK
Sbjct: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE
Sbjct: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK
Sbjct: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM
Sbjct: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS
Sbjct: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
           FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK
Sbjct: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
           FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD
Sbjct: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK
Sbjct: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480


>gi|42522141|ref|NP_967521.1| FlgK, flagellar hook-associated protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39574672|emb|CAE78514.1| FlgK, flagellar hook-associated protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 469

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/491 (15%), Positives = 163/491 (33%), Gaps = 34/491 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS + A+ +  +    N+     ++  NI N   + + R+      +             
Sbjct: 1   MSKISAMMDTGKRSLMNSQTALQTVGHNIANKSTEGFSRQRVELQTNTPITEGNLQIGMG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                    N    +K +     ++G Q       +  E +  ++  N     Y++   +
Sbjct: 61  ARAGVVTRVNNPWLEKQIQREGMSMGFQDSRADALSRVEQIY-NEQNNKGLNQYMTDFFN 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S    S N         V +++  + ++F     +++ ++ D D +I+  +  + +   E
Sbjct: 120 SFRELSNNPESLASRTMVRESSVALTKDFGRVVGQLKAVQEDLDGQIKTTVEEVNQLSKE 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N+ ++        A+D  D+RD+LL+K+ E I IS     +  + V       L  
Sbjct: 180 IASLNEKVQMVEVQGTPANDERDRRDLLLKKLGEKIDISWAEGRDGMVTVTAGRTAILVS 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +       +             F      S+N    +  G+I   L +RD V+      
Sbjct: 240 GIGSSELKARQT--DARDRVEVFFEGSGSTSANITEQITGGRIGGALDVRDKVIEDLLGH 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +D MA  L    +       +     G+   D    +                       
Sbjct: 298 VDNMAYTLAKEVNTAHIEGFDKSGRNGVLFFDMPDQVKGAASVIGLNK------------ 345

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                  V +         AG   + N       +              TL +Y    +G
Sbjct: 346 --TVFNDVGRIATGAQPGAAGDNTVANVISALQYRQV------MDGGTSTLDDYYSTQVG 397

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +      +       + V + ++    +  GV+L EE + +I+ +++Y+ S +LI   D
Sbjct: 398 QIGAVTQRAVKAQESQKNVISQLTNIRESISGVSLDEETTKMIEFQKTYDASARLIKTAD 457

Query: 470 KMLQTLLEGVK 480
           +M  T+L   +
Sbjct: 458 EMFDTVLNLKR 468


>gi|301168512|emb|CBW28102.1| putative flagellar hook-associated protein 1 [Bacteriovorax marinus
           SJ]
          Length = 487

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 171/491 (34%), Gaps = 17/491 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N  +   N + +   +   NI N + + Y R+    T +             V V
Sbjct: 1   MSDLLNIGRTGLNASKKSLETTGHNISNVNTEGYSRQRVNQTTNTPITKGGTVHGTGVRV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +    N +  +K L    S               E +  +D   +     I+K  +S  
Sbjct: 61  KSVTRINDDFINKRLEKAISNDRFFEQRAERMTQIEDIF-NDLDTDGLNQVINKFFNSFR 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +     + +   V D A  VVQ+F      +  I A  D+ ++ E+ ++ + L  +  
Sbjct: 120 ELANQPENETIRSVVRDQANLVVQDFRRIQENLNSISAGIDENMKAEVIDINQTLEHIAN 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I+   A   +  D  DQRD+ ++ +S+   + T        VV      TL     
Sbjct: 180 LNKKIQSLEAINEEVGDLRDQRDLAVRNLSKSFKVHTYQDEKGQYVVAAKGVGTLVTATQ 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDG---VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                   ++   ++   P   D       +         G + +L ++R+  +   +N+
Sbjct: 240 VQRLQIGTSNKENSTNGLPGSADIFFEGKPAHILTQKFQGGSLSSLAKVRNEEIVDIRNK 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +D++A  L  S +          N P      G     +             P    + +
Sbjct: 300 VDQIAYNLTKSVNAIHRRGY--VNRPLNVDEAGNVSSVDSKGLTTGINFFKEPTDPKDAA 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 S  K+ L N+    G P+       S   + I       +   TL E+   ++G
Sbjct: 358 LNMSLSSAVKEDLTNIVTALG-PNSPGDNRVSLAISKIQHERIVGDGESTLEEFYLQTVG 416

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +      +     +++ +           VGV++ EE + ++K + +Y  S K++   D
Sbjct: 417 KIGLEAGKAKLDSEQAEGLKAQAVSIRERLVGVSIDEEAANMVKFQHAYEASAKIMQTAD 476

Query: 470 KMLQTLLEGVK 480
           +M +T++   +
Sbjct: 477 EMFKTVIGIKR 487


>gi|226314925|ref|YP_002774821.1| flagellar hook-associated protein 1 [Brevibacillus brevis NBRC
           100599]
 gi|226097875|dbj|BAH46317.1| flagellar hook-associated protein 1 [Brevibacillus brevis NBRC
           100599]
          Length = 495

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/499 (13%), Positives = 163/499 (32%), Gaps = 32/499 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       ++           +   NI NA+ + Y R+      +               
Sbjct: 3   STFHGIEVSKRGLFAQQSALNTTGHNISNANTEGYSRQRVNMQATTGLPYVGMQASIEPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +   +   D          G            E +  ++  +      +
Sbjct: 63  LLGTGVQATSIQRLREEFLDIQYRNEYKRQGYWDGRLETLEKLEGIM-NEPSDTGLQKVM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            ++  + +  +K+ ++      V + ++ V   FNT    +++++ D +  + ++   + 
Sbjct: 122 DQMWQAWQDLAKDPTDTSARAVVRERSKAVADTFNTLTNHIKEVQTDLNNVVNVKSMEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               ++  +N+ I       +  +D  DQRDVLL K+S+++ +         + V     
Sbjct: 182 SLGQQIANLNNQIANVVPHGYQPNDLYDQRDVLLDKLSKLVEVRATQSTAGMVNVTIEGR 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +            + S  V +  NP      +           G +   LQ RD +VP
Sbjct: 242 EFV----------TGITSQPVATVQNPATGMSDMTLGGAAFVPTTGYMAGTLQSRDQIVP 291

Query: 285 IFQNQLDEMARVLIGSFSEKDPIA---GNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
               +LD +A  L    ++         +  N     +   +                  
Sbjct: 292 GMLKRLDVLAVNLTKEINDLHRAGRSLSDINNGTVQDLPFFVDANSLAANPASKNYPTSA 351

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INTNVTL 400
                NP  ++   +++           G             K          +  + TL
Sbjct: 352 SGIVINPEIMKSLDAIAAAQEEAGSTPVGNNKSALAIASIKFKVLAAGTGPNDLAESSTL 411

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             Y R +I  L  +  ++    + S+++   +     +  GV++ +E++ ++K + +Y+ 
Sbjct: 412 DNYYRYTISQLGVDAQEAERNQLNSEMLVGTVDSQRQSVSGVSIDDEMAEMVKYQHAYSA 471

Query: 461 SNKLIMFTDKMLQTLLEGV 479
           S +++   D++L  ++ G+
Sbjct: 472 SARVMTSMDEILDKVINGM 490


>gi|221635454|ref|YP_002523330.1| flagellar hook-associated protein FlgK [Thermomicrobium roseum DSM
           5159]
 gi|221158038|gb|ACM07156.1| flagellar hook-associated protein FlgK [Thermomicrobium roseum DSM
           5159]
          Length = 468

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/493 (15%), Positives = 170/493 (34%), Gaps = 49/493 (9%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TIS 46
                 A        +   +   NI NA+   + R+                        
Sbjct: 3   FRALETAFRGLMAQQRVVDTANHNIANANTPGFARQRVSLVPSMPYTVPAFNRSGLAGQV 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V V +     +++FD      S A+G+   L    A  E +  ++         + +
Sbjct: 63  GTGVLVASITRVRESVFDLQYRVQSQALGEASTLVDAYAQIEAVF-NEPTEAGLGTLLDR 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              + ++      +      ++ +A  +  N N   R++ +++AD   ++ L++S +   
Sbjct: 122 FWRAWQAVGNQPEDLAARAALVQDATTLATNLNRMRRQLTELQADTVTKLTLQVSEVNSI 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
              L  +N  I    A+    +D +DQRD+LL K++   G +     N  + +Y   G  
Sbjct: 182 AERLASLNQQIVAALATGQTPNDLMDQRDLLLDKLARFTGATIRPLPNGAVNIYL-GGYP 240

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L +         +++  T +              +    A+ +G ++ALL + ++V+P  
Sbjct: 241 LVDQDQWFPLSVQVSGGTASVLWQG---------TTSPVALERGSLQALLHLHNAVLPGL 291

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             +L+++   L    +          ++PG         +           + V P   +
Sbjct: 292 VQKLEDIRDALANEVNTLHMTGYGLSDLPGPPPGRPFFRITAG------GELEVEPSLVA 345

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +P  +            +     G   +     +  +K      +   +   T+ ++   
Sbjct: 346 DPQLIA---------AADAPGEPGNNAIARQIAELRSK------LVLNSGTATINDFYNT 390

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +      +       + +   I       + V+L EE++ LIK +Q+Y  + + I 
Sbjct: 391 LVAEVGGASQTAQVTRDNQRALVEAIDRQRQEIMAVSLDEEMANLIKYQQAYGAAARAIT 450

Query: 467 FTDKMLQTLLEGV 479
             D+ML  ++ G+
Sbjct: 451 AVDEMLDRIINGM 463


>gi|78221659|ref|YP_383406.1| flagellar hook-associated protein [Geobacter metallireducens GS-15]
 gi|78192914|gb|ABB30681.1| Flagellar hook-associated protein [Geobacter metallireducens GS-15]
          Length = 477

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 177/495 (35%), Gaps = 33/495 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M++ ++ +  ++              NI N +   Y R+ T+                 V
Sbjct: 1   MAIQSILDIGKSSLIAQRLALEVTSENITNVNTPGYSRQTTVLATGITTMERGFPMGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +          L   ++  G    + S     E +  +D   +     +    ++
Sbjct: 61  KVADIQRAYDAFLQSQLSKENTDNGFGTAVLSSMKRTEQLF-NDLTTDGLGKAMQNFFNA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + N       + V+   +++V  F      +  ++ +A+K +E   S++   + ++
Sbjct: 120 WQDLTANPQGQPERQAVLSMGQQLVDQFQRINGYLNDVKNEANKSLEGLTSDVNDKIGQI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +ND IK        A++  DQRD+L++++S  +GI+ +   +  + V  + G  L   
Sbjct: 180 ASLNDQIKQIEIQGGHANELRDQRDLLVRQLSSKVGITYVENGDGTLSVSLTLGQPLVIG 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPI 285
                   + +    +         G   + +  +        +G++   LQ+RD+++  
Sbjct: 240 DKAAKLSLEPDPGNSSYYKIMATSPGGNTAVDISTIAGGPGNAQGEMGGALQVRDTLING 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           F + LDE+A  L    +     +       GL   +    +                   
Sbjct: 300 FLSDLDELAYNLANEVNSVHSASYGLTGTTGLNFFNPPAAMAG------------YSGKG 347

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                +     V+      +    G     +     ++K      +A    N+TL  +  
Sbjct: 348 GISLAISKTSDVAAADSDPLTGGTGNNKSASSIASIYDKV-----LATSGGNLTLEGFFN 402

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +G +  +  D+     +S  +   +     +  GV+L EEL+ L+K +++Y  + KLI
Sbjct: 403 SLVGKVGVSVQDATRRADQSGGILKQLDNLRESNSGVSLDEELANLVKYQKAYEGAAKLI 462

Query: 466 MFTDKMLQTLLEGVK 480
                M+ T+L  ++
Sbjct: 463 NVGSDMMDTILGLIR 477


>gi|17988504|ref|NP_541137.1| flagellar hook-associated protein FlgK [Brucella melitensis bv. 1
           str. 16M]
 gi|225686884|ref|YP_002734856.1| flagellar hook-associated protein FlgK [Brucella melitensis ATCC
           23457]
 gi|256042865|ref|ZP_05445811.1| flagellar hook-associated protein FlgK [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256261979|ref|ZP_05464511.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260564102|ref|ZP_05834587.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265989300|ref|ZP_06101857.1| FlgK [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984296|gb|AAL53401.1| flagellar hook-associated protein 1 [Brucella melitensis bv. 1 str.
           16M]
 gi|225642989|gb|ACO02902.1| flagellar hook-associated protein FlgK [Brucella melitensis ATCC
           23457]
 gi|260151745|gb|EEW86838.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262999969|gb|EEZ12659.1| FlgK [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091463|gb|EEZ15999.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326411302|gb|ADZ68366.1| flagellar hook-associated protein FlgK [Brucella melitensis M28]
 gi|326554591|gb|ADZ89230.1| flagellar hook-associated protein FlgK [Brucella melitensis M5-90]
          Length = 484

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y  + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDCTRQVQSLRNDADREIADSVANINDLLAKFEKANQNVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|52082076|ref|YP_080867.1| flagellar hook-associated protein FlgK [Bacillus licheniformis ATCC
           14580]
 gi|52787465|ref|YP_093294.1| flagellar hook-associated protein FlgK [Bacillus licheniformis ATCC
           14580]
 gi|319647943|ref|ZP_08002161.1| FlgK protein [Bacillus sp. BT1B_CT2]
 gi|52005287|gb|AAU25229.1| flagellar hook-associated protein 1 [Bacillus licheniformis ATCC
           14580]
 gi|52349967|gb|AAU42601.1| FlgK [Bacillus licheniformis ATCC 14580]
 gi|317390284|gb|EFV71093.1| FlgK protein [Bacillus sp. BT1B_CT2]
          Length = 507

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/514 (14%), Positives = 159/514 (30%), Gaps = 53/514 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TI 45
                  A+   +      +    NI NA+ + Y R+                       
Sbjct: 5   TFLGLEIAKRGLSAQQSALSVTANNISNANTEGYSRQRVTFKASTPYPSVSRDSVGLAGQ 64

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V + +      +  D      ++  G            E +  ++  +      ++
Sbjct: 65  MGTGVEIGSVERVRDSFLDYQYRTQNTKAGYYNAKVDAFNQMEGIM-NELNDTGLNKVLN 123

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
              +S++  + N  E      V    + V   FNT    +  ++++   +I+  +  +  
Sbjct: 124 SFWNSIQELTNNAHEPSAASVVAQKGQAVADTFNTLYESLTTVQSNLGDQIDQNVMTINS 183

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            LS+L  +N+ I     + +  +D  D+RD LL ++S ++ I           + T++G 
Sbjct: 184 LLSQLNSLNEQIAKVEPNGYLPNDLYDKRDQLLDELSSMVNIKVSYAKTGGNPLATAEGI 243

Query: 226 TLFETVPRD------------INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
              E +  +               E +             +          S   KG + 
Sbjct: 244 VSIEVLDVNGQSLGKVLDGPNFTTETVKVNYDNDTGLVTGVSLGGTDIGIDSFTSKGSLL 303

Query: 274 ALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
            L++            + P     LD MA      F+        S   PG    +    
Sbjct: 304 GLIESYGYMSNGEEKGLYPEMLADLDTMALAFAKEFNAVHQSGFTSSGEPGGIFFEFTGG 363

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                     +    +    S    +    +       N  NLA          D     
Sbjct: 364 EAEPAKGAAGKIKVADEIMNSKGDKVAASLNGEASDNANATNLANVFTKKIQIGD----- 418

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                        T+L+Y    IG +     +++ L   ++ + N    +  +   V+L 
Sbjct: 419 ----------KTTTVLDYYAGIIGEMGVKAQETNRLAKNTETLVNTAELNRQSVSAVSLD 468

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           EE+S +I+ + +YN + ++I   D++L  ++ G+
Sbjct: 469 EEMSNMIQFQHAYNAAARMITLQDEVLDKIINGM 502


>gi|23500853|ref|NP_700293.1| flagellar hook-associated protein FlgK [Brucella suis 1330]
 gi|161621181|ref|YP_001595067.1| flagellar hook-associated protein FlgK [Brucella canis ATCC 23365]
 gi|254699261|ref|ZP_05161089.1| flagellar hook-associated protein FlgK [Brucella suis bv. 5 str.
           513]
 gi|254702382|ref|ZP_05164210.1| flagellar hook-associated protein FlgK [Brucella suis bv. 3 str.
           686]
 gi|254711817|ref|ZP_05173628.1| flagellar hook-associated protein FlgK [Brucella ceti M644/93/1]
 gi|254714886|ref|ZP_05176697.1| flagellar hook-associated protein FlgK [Brucella ceti M13/05/1]
 gi|256015897|ref|YP_003105906.1| flagellar hook-associated protein [Brucella microti CCM 4915]
 gi|256059805|ref|ZP_05450000.1| flagellar hook-associated protein FlgK [Brucella neotomae 5K33]
 gi|260568715|ref|ZP_05839184.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40]
 gi|261216576|ref|ZP_05930857.1| flagellar hook-associated protein FlgK [Brucella ceti M13/05/1]
 gi|261319446|ref|ZP_05958643.1| flagellar hook-associated protein FlgK [Brucella ceti M644/93/1]
 gi|261323785|ref|ZP_05962982.1| FlgK [Brucella neotomae 5K33]
 gi|261749701|ref|ZP_05993410.1| flagellar hook-associated protein [Brucella suis bv. 5 str. 513]
 gi|261752945|ref|ZP_05996654.1| flagellar hook-associated protein [Brucella suis bv. 3 str. 686]
 gi|294852967|ref|ZP_06793639.1| flagellar hook-associated protein FlgK [Brucella sp. NVSL 07-0026]
 gi|23464517|gb|AAN34298.1| flagellar hook-associated protein FlgK, putative [Brucella suis
           1330]
 gi|161337992|gb|ABX64296.1| flagellar hook-associated protein FlgK [Brucella canis ATCC 23365]
 gi|255998557|gb|ACU50244.1| flagellar hook-associated protein [Brucella microti CCM 4915]
 gi|260155380|gb|EEW90461.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40]
 gi|260921665|gb|EEX88233.1| flagellar hook-associated protein FlgK [Brucella ceti M13/05/1]
 gi|261292136|gb|EEX95632.1| flagellar hook-associated protein FlgK [Brucella ceti M644/93/1]
 gi|261299765|gb|EEY03262.1| FlgK [Brucella neotomae 5K33]
 gi|261739454|gb|EEY27380.1| flagellar hook-associated protein [Brucella suis bv. 5 str. 513]
 gi|261742698|gb|EEY30624.1| flagellar hook-associated protein [Brucella suis bv. 3 str. 686]
 gi|294818622|gb|EFG35622.1| flagellar hook-associated protein FlgK [Brucella sp. NVSL 07-0026]
          Length = 484

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 239/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|313903612|ref|ZP_07837002.1| flagellar hook-associated protein FlgK [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466165|gb|EFR61689.1| flagellar hook-associated protein FlgK [Thermaerobacter
           subterraneus DSM 13965]
          Length = 533

 Score =  234 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/539 (12%), Positives = 163/539 (30%), Gaps = 78/539 (14%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44
           S       A+       +       NI NA+   Y R+                      
Sbjct: 3   STFFGLELARLGLWAQQRALDVTGHNIANANTPGYSRQVARLAPTPAYAPPSRAMAVEAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   +       D+ +      +G+ ++     A  E +   +  +      +
Sbjct: 63  QVGTGVQVAGIQRVRDLFLDRQVRDLQGQLGRWQVRTQTLAELETILG-EPSDAGLARAL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   ++L   +            I  A  +++ F  + R++  ++ + D  I   +    
Sbjct: 122 ADFWEALGVVANRPDSLPARTAAIQQAHTLLERFQEADRQLADLQRNLDASILARVDRAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD- 223
           +  ++L  ++  I+  TA+    +D LD+RD L++++  ++ +    R    + V  +  
Sbjct: 182 QIATQLADLHRRIQVATAAGQSPNDLLDERDRLVEELGGLLPVRVTEREGGALRVEVAGL 241

Query: 224 ---------------------------------------------GTTLFETVPRDINFE 238
                                                           ++ +    +  E
Sbjct: 242 PLVDGRVVHLLVVREEPVAATGAGTGGAGSPGGGPAPGDPGAGDLVVRIYWSGTAQVLAE 301

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +  +  E       G  +     + +  G+I   L+ RD +V   +  L  +   L 
Sbjct: 302 GTGTGALAGEPGAGTGAGPALLPLDDTVLEGGEIDGFLESRDRLVAGLRQDLKALFFALA 361

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            + ++         + P    A G +         +  T         NP+        +
Sbjct: 362 TAVNQVHRQGYGLNDAP----APGSQGGGAGRDMFLLGTGTDLQAVVVNPALDDPANLAA 417

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                   +            ++     +      +       +Y  + +  L      +
Sbjct: 418 ALEAGAPGDG----------RNALALAQLRHAALALPGGAPAQDYLESVVAGLGIAGRQA 467

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            +    +Q++ + ++    +  GV+L EE++ L++ + +Y  + +L+   D ML  L+E
Sbjct: 468 QEGQRTTQLLMDQVAAQRESVRGVSLDEEMTQLVRYQHAYAAAARLVTAVDSMLAVLIE 526


>gi|254695092|ref|ZP_05156920.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215443|ref|ZP_05929724.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917050|gb|EEX83911.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 3 str.
           Tulya]
          Length = 484

 Score =  234 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y  + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|306841277|ref|ZP_07473988.1| flagellar hook-associated protein FlgK [Brucella sp. BO2]
 gi|306288679|gb|EFM60010.1| flagellar hook-associated protein FlgK [Brucella sp. BO2]
          Length = 484

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLAGGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 TVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIGVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L  Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLTGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|306845418|ref|ZP_07477992.1| flagellar hook-associated protein FlgK [Brucella sp. BO1]
 gi|306274161|gb|EFM55977.1| flagellar hook-associated protein FlgK [Brucella sp. BO1]
          Length = 484

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA     +L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSILAGGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFERANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  ++LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSEYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 TVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIGVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +N +  AG+ D +    ++F++  +FD  AGI+++ +L  Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNAQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLTGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|149182549|ref|ZP_01861021.1| flagellar hook-associated protein [Bacillus sp. SG-1]
 gi|148849741|gb|EDL63919.1| flagellar hook-associated protein [Bacillus sp. SG-1]
          Length = 529

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/524 (14%), Positives = 158/524 (30%), Gaps = 48/524 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+               N+ NA+   + R+      +               
Sbjct: 3   STFQGLETARRGMYTQQSALQVTGHNVANANTLGFTRQRINFEQTETYPPPAMNKPQIPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +    +  D      ++ +G            E +  ++  ++     +
Sbjct: 63  QIGTGVEAESVQRIRDSFLDVQYRGENNKLGYWETKAESLMKMEEIM-NEPSDSGLAKTM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                SL+  + N         V      + + F   +  +  IR D   EI +    + 
Sbjct: 122 DMFWQSLQDLAVNPKNSGARSVVRQRGIALAETFQYLSNSLSTIRQDIKNEIGVTEKEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  VN  I          +D  D+RD L+  +S+++ I    + +       ++G
Sbjct: 182 SLLKQIHNVNKQIGDVEPHGMSPNDLYDERDRLIDDLSKLVNIKVTNQPSGGNSSPLAEG 241

Query: 225 TTLFETVPRD------------INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   V  +             N  K+N  +  ++ N   I     +         GK+
Sbjct: 242 KAVISLVDGNNRPIANLVHAKGYNEIKVNIPSTGTDVNVNSISIGSQNYEMEKFDADGKL 301

Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAG--------NSENVP 315
           K L++               P   ++LD +A      F++              +     
Sbjct: 302 KGLIESFGYMDKNGDTAGTYPDMLSELDNLAFTFAKEFNKIHSAGMSPNEINNVDKNGDR 361

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                D +  ++               Q     S ++           +    A   D  
Sbjct: 362 NPVNKDILFFVNGDTNSLSESDRKGFSQRIGLSSEIKSSLDNIANADGSKPEEATTGDSS 421

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                +   N  FD     +       Y    IG +  +  ++  L   S  +   + E 
Sbjct: 422 VLLQLTEVINKNFD-YGQNSQMANFRNYYEVLIGGMAVDAQNAVRLTDNSATLRQAVEER 480

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +T  V+L EE++ +I+ + +YN S ++I   D++L  ++ G+
Sbjct: 481 RMSTSAVSLDEEMTNMIQYQHAYNASARMISLQDELLDKIINGM 524


>gi|254720774|ref|ZP_05182585.1| flagellar hook-associated protein FlgK [Brucella sp. 83/13]
 gi|265985832|ref|ZP_06098567.1| flagellar hook-associated protein FlgK [Brucella sp. 83/13]
 gi|306840135|ref|ZP_07472920.1| flagellar hook-associated protein FlgK [Brucella sp. NF 2653]
 gi|264664424|gb|EEZ34685.1| flagellar hook-associated protein FlgK [Brucella sp. 83/13]
 gi|306404780|gb|EFM61074.1| flagellar hook-associated protein FlgK [Brucella sp. NF 2653]
          Length = 484

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 237/484 (48%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLAGGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T+      + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 TVLTLGVAGKAVMVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIGVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +N +  AG+ D +    ++F++  +FD  AGI++  +L  Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNAQGAAGFSDRLRALNEAFSEPMVFDAAAGISSGSSLTGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|163845456|ref|YP_001623111.1| flagellar hook-associated protein FlgK [Brucella suis ATCC 23445]
 gi|163676179|gb|ABY40289.1| flagellar hook-associated protein FlgK [Brucella suis ATCC 23445]
          Length = 484

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 238/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + +  NI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSPNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|254691612|ref|ZP_05154866.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 6 str.
           870]
 gi|256256799|ref|ZP_05462335.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 9 str.
           C68]
 gi|260757243|ref|ZP_05869591.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 6 str.
           870]
 gi|260883047|ref|ZP_05894661.1| FlgK [Brucella abortus bv. 9 str. C68]
 gi|297250152|ref|ZP_06933853.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 5 str.
           B3196]
 gi|260677351|gb|EEX64172.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 6 str.
           870]
 gi|260872575|gb|EEX79644.1| FlgK [Brucella abortus bv. 9 str. C68]
 gi|297174021|gb|EFH33385.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 5 str.
           B3196]
          Length = 484

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 237/484 (48%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y  + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++   IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLLGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|153011507|ref|YP_001372721.1| flagellar hook-associated protein FlgK [Ochrobactrum anthropi ATCC
           49188]
 gi|151563395|gb|ABS16892.1| flagellar hook-associated protein FlgK [Ochrobactrum anthropi ATCC
           49188]
          Length = 484

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 238/484 (49%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A++ +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNIAGANDPDYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S      +L         + + D+Y+ SP+  I  LRD+L++++ + S 
Sbjct: 61  EALFNKFIQSNSTASSSSILAGGLDRLSSLYSADNYSGSPSALIGDLRDALQTFAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   ++VQ +R DAD+EI   ++N+   L++   +N  I   
Sbjct: 121 SALGDSVVSTAQSLANALNAGTKQVQSLRNDADREIADSVANINDLLAKFEKINQEIVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T +  D  D++DQRD +L+++S  IGI+T++R +NDMV++  +G TLFET  R ++FE+ 
Sbjct: 181 TRANRDVSDYMDQRDSILKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVSFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                      + +DGV ++          G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 TVLAPGIAGKAVLVDGVPLNHETFDQPYGTGRLSGLLQLRDQIAPQYQMQLDEIARNLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI----CVNPQYRSNPSFLRDGG 355
            F+E D     ++       A         +  GI+ TI            +   LRDGG
Sbjct: 301 MFAESDQTGVGADKTGLFSWAGSPDVPGAGVSAGIAGTIKVSSAFVTSEGGSSLLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +N +  AG+ D +    ++F++   F+ VAG+ TN +L +Y+ +SI WLE  R
Sbjct: 361 ANGADYKYNSEGGAGFSDRLRALNEAFSEPMTFNSVAGLATNSSLTDYSSSSISWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  + +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 421 QKANSEFSYNATIASQADAALSNANGVDMDTEMALLLDLEHSYQASSRVLTTISAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|89895774|ref|YP_519261.1| hypothetical protein DSY3028 [Desulfitobacterium hafniense Y51]
 gi|89335222|dbj|BAE84817.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 533

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/528 (12%), Positives = 178/528 (33%), Gaps = 51/528 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  +    A+    +      +   NI NA+   Y R+      +               
Sbjct: 3   STFSGLELARRALESQQIALDTTGHNIANANTIGYTRQVVNLQATSPDSIPGMGHYLSIG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             VTV +         D+     +S        ++  A  E +  ++  +NS ++ +++ 
Sbjct: 63  TGVTVQSIERARDIFIDRQFRWENSKQEYWATRENTLAQIEGLL-NEPSDNSLSNDLTQF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +    + N         +++ A  +    +   +++ + +   D  + ++I  +  + 
Sbjct: 122 WSAWSVLANNPENLGARSVILERAATLADTLHHIDQQITEAQKSLDSSVRVQIDQINSYA 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---- 223
           +++  +N  IK    +  + +D LD+RD L+  +S+++ +  +   + +      +    
Sbjct: 182 NQIQELNFQIKKVQITGDNPNDLLDKRDALIDDLSKLVNVRVVESRDPNFTDREVNIFKL 241

Query: 224 --------GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVPKGKI 272
                      L +            +         +           ++       G +
Sbjct: 242 YIGNEKATNQILVDDTKAYQLETPAAAGASGEPFAEVKWGAGHPLGSGTSINLGEGSGAL 301

Query: 273 KALLQIR---------------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
           +A + +R               ++ +   ++Q +++A  L  + +       + +    L
Sbjct: 302 QASILLRGSGFEYDTANGDTKANAHLAYLRDQYNQLANGLAEAVNAIHRTGIDRDGNSDL 361

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP----- 372
              D            ++ T+  +P   +     +D          N +           
Sbjct: 362 DFFDTSGGTVTAANIKVNATLISDPWKIATGKVTKDADGNPVGAYGNGEIAKAISSLATG 421

Query: 373 -DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              ++   D    + +  P     +  ++ +Y   ++  L  +   +  +     V+  H
Sbjct: 422 WTGLDDLTDPVTGDPVTTPPLPPLSASSIGDYYGAALAELGVDAQQATRMKESQAVLVTH 481

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +     + VGVN+ EE++ L+K ++SY  + +++   D ML T++ G+
Sbjct: 482 MYNQRQSVVGVNMDEEITNLVKFQKSYTAAARIVTMLDSMLDTIVNGM 529


>gi|237817501|ref|ZP_04596492.1| flagellar hook-associated protein FlgK [Brucella abortus str. 2308
           A]
 gi|237787336|gb|EEP61553.1| flagellar hook-associated protein FlgK [Brucella abortus str. 2308
           A]
          Length = 492

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 236/484 (48%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 9   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 68

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y  + S 
Sbjct: 69  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 128

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 129 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 188

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++   IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 189 TRMGRDVSDYLDQRDALLKQLLGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 248

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 249 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 308

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 309 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 368

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 369 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 428

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S+ ++     ML  L
Sbjct: 429 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSWVLTTVSAMLDDL 488

Query: 476 LEGV 479
           L  V
Sbjct: 489 LNAV 492


>gi|254475034|ref|ZP_05088420.1| flagellar hook-associated protein FlgK [Ruegeria sp. R11]
 gi|214029277|gb|EEB70112.1| flagellar hook-associated protein FlgK [Ruegeria sp. R11]
          Length = 482

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 186/487 (38%), Gaps = 18/487 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57
           M++ +  N A +    A +Q + +  N+ N     Y RR    T +      V V   + 
Sbjct: 1   MTITSALNSAMSGLTAAGRQTSVVSENLANVLTPGYSRRSVALTSAGDGFAGVRVNGVQR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            N       +   ++ +G  ++   F      +        S T  ++    +L      
Sbjct: 61  FNDPGLQASVRTANTELGVSKVQSDFYGRMVELVGKADDPYSVTQRLTDFDSALIEAISR 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                    +   AEE+ ++ + +A  ++  R  AD+ I++++  + + L ++  +N  I
Sbjct: 121 PDSGPRLNDLSIQAEELARSISDAAEGLRNERTAADRAIDVQVETVNQSLEKIQKLNAKI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
               A+  D    LDQRD+L+ +++EII +  + R+   + +++  G  L +  P ++ F
Sbjct: 181 AISQAAGADTVSLLDQRDLLIDQVNEIIPVKVVNRDRGQVALFSDGGAVLLDGQPAELTF 240

Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           +                + + I+G+ V +  G  +  G + A  ++RD +    Q  LD 
Sbjct: 241 DGKADTLPYMTLGNGLLSGLQINGIDVDTGPGGPLRGGSLAANFEVRDVLTVEAQEDLDA 300

Query: 293 MARVLIGSFSEK---DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +AR LI  F +      +      +     A         +   I     V  Q ++   
Sbjct: 301 VARDLIERFQDPALDTTLGALDPGLFTDQGAFFDPANTVGIANRIELNDKVAMQGQAETW 360

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            LRD               AG   L+  Y D+ +   +   V     N+     + N + 
Sbjct: 361 RLRD------GLNAAGPGNAGDASLLRAYTDALDTKRLVSSVGLGTANLDASTLSANLLS 414

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
              ++   +      +Q     + +      GV+   EL  LI +E+ Y  + ++I   D
Sbjct: 415 RFAQSEYSAQQNVAFAQATHTEMQQRQLAQ-GVDSDAELQNLIVIEKVYQANARMISVVD 473

Query: 470 KMLQTLL 476
           ++++TLL
Sbjct: 474 ELMETLL 480


>gi|89100618|ref|ZP_01173476.1| flagellar hook-associated protein K [Bacillus sp. NRRL B-14911]
 gi|89084642|gb|EAR63785.1| flagellar hook-associated protein K [Bacillus sp. NRRL B-14911]
          Length = 527

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/528 (12%), Positives = 163/528 (30%), Gaps = 61/528 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------SPE 48
               A+               NI NA+   + R+                          
Sbjct: 2   GLETARRGMFTQQSALYVTGHNIANANTPGFSRQRINFEQTSPYPAASMNRPQVPGQMGT 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V   + +   +   D      ++ +G    +       E +  ++   +     + K  
Sbjct: 62  GVEAGSVQRIREGFLDLQYRVEANKVGYYSSMSESLTKMEEIM-NEPSESGLHATMEKFW 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +SL+  + +            + + V    N     + +++ D   EI +++  +   +S
Sbjct: 121 NSLQDIASHTENTGARDVAAASGQMVADTLNYYYNSLSRVQQDIGSEIGVKVKEINGLVS 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  +N  I     + +  +D  D+RD+ + ++S+++ I       ++          L+
Sbjct: 181 QINALNKQIASVEPNGYLPNDLYDERDLYVDQLSQLVNIKVTNVKPDNYGHAKDISEGLY 240

Query: 229 ----------ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ--------------- 263
                        P  +  +      +   +     D    ++                 
Sbjct: 241 KIEIVGDDGKSFSPAAVLLDVTKEDGLKDPNLLEVTDITDAANEDLELVSGLITEVRVGG 300

Query: 264 ---GSAVPKGKIKALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
               S    G++  L++               P    +L++        F++      + 
Sbjct: 301 AALPSMNFSGELSGLIKSYGYIDNSGNKAGFYPDMLQKLNDFTTAFAMEFNKIHESGFDL 360

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
              PG    +     D       ++ I VN    ++ S +    + +     N       
Sbjct: 361 NGNPGKAFFE----FDPSQGDNPAQQIRVNKDILADSSLIAAAATSTGGSGDNDNAHELS 416

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
                 +    +K     P +  + N  L  Y    IG L  +   +      S V+ + 
Sbjct: 417 QIKTKAFGSFLSKGDAGFPASMTSGN--LDTYYSGIIGRLGVDSQSAQKNANNSIVLADS 474

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +S  +   V+L EE++ +IK + +YN + + I   D+ML  ++ G+
Sbjct: 475 VDKSRQSVSAVSLDEEMTNMIKFQHAYNAAARNITVVDEMLDKIINGM 522


>gi|147678447|ref|YP_001212662.1| flagellar hook-associated protein FlgK [Pelotomaculum
           thermopropionicum SI]
 gi|146274544|dbj|BAF60293.1| flagellar hook-associated protein [Pelotomaculum thermopropionicum
           SI]
          Length = 471

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/496 (13%), Positives = 162/496 (32%), Gaps = 48/496 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       ++               N+ NA+   + R+  +   S               
Sbjct: 4   STFFSLEISRRGLAAGQTGMEVSGHNVANANTPGFTRQRPVLAASDPYTMPSRGKPVAAL 63

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                VTV           D  +   + ++G     +   +  E +   +  +      +
Sbjct: 64  QVGTGVTVEHIERIRDGFLDGQIRTETGSLGNWETQRDALSEVETIFM-EPSDTGLNTLL 122

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S   +S +  SKN     +   ++ N+  +    N   + ++ ++ +  +   + I+++ 
Sbjct: 123 SNFWNSWQELSKNAENSPIRAALVQNSVSLANGLNHMYQMLETVKTNQRELANICINDIN 182

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               ++  +N  I     +    +D LD+RD+LL +++ +         +  + V     
Sbjct: 183 SKARQIADLNKQIVNIKVAGDQPNDLLDRRDLLLDELARLTNFEVAENADGSIRVDIGTF 242

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD-SVV 283
             +  T    I      +     + +P               +  G+++ +  + + + +
Sbjct: 243 NLVDGTDYSAIEPITGWTPPQPWDQSPY------------DQITSGQLQGIKDVLNKNKL 290

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             + + LD +A  LI   +         +   GL                   T      
Sbjct: 291 QGYADDLDRLASTLITEINGLHSAGYGLDGSSGLNYF----------------TGTGASN 334

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
              N   + D   V+     +     G  D      ++     + +        +T   +
Sbjct: 335 IAVNSDIINDLNKVAAASTGDADG-DGACDAPGDGSNALLIAQLQNKSIAGLGGITFGNF 393

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +N    L  +  +S  +    Q + + +S    +  GV++ EE++ LI+ + +Y  + +
Sbjct: 394 YKNLTARLGVDTQESSRMAENQQALVDQLSSRRESISGVSMDEEMTSLIQYQYAYQGAAR 453

Query: 464 LIMFTDKMLQTLLEGV 479
           +I   D+ML TL+  +
Sbjct: 454 VITVLDEMLDTLINRM 469


>gi|281418802|ref|ZP_06249821.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           JW20]
 gi|281407886|gb|EFB38145.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           JW20]
          Length = 489

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 180/492 (36%), Gaps = 26/492 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            A    A++      +  +    N+ N + K Y R+  M T                ++ 
Sbjct: 3   FAGLEIARSGMYVNERALSVTGHNVANVNTKGYARQQAMITTGPYLNLMRYQIGLGASIQ 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R       D +    ++ +G            + +  D   +    + +++  ++ + 
Sbjct: 63  ETRQIRHLFLDNIYRNENTELGYWETRSKTFQEIQTILGDPMGD-GLQNVLNQFWNAWQE 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            SK      +   V   AE +V   N    ++ K++ D +++I L I  +     ++  +
Sbjct: 122 LSKEPDSLTVRALVRQRAEALVHQINHLGAQLDKLQEDLNQQIVLTIKQINDITKQIAEL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I  +     +A+D+ DQR++LL ++S++         N D+ V       + +    
Sbjct: 182 NVKIMQEEVCGDNANDYRDQRNLLLDELSKLADFEFTEMQNGDVQVTLGGYILVTK---- 237

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQ 287
               E++N     S+ N +F    +   N    V  G ++ LL+ R  V      +    
Sbjct: 238 ---GEQINLVAGKSDINKMFFVPKIEGENIEVPVKSGVLRGLLESRGDVSGSIEGITDPA 294

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                 +  ++     +  +  NS       +    K L N    G    + +NP Y   
Sbjct: 295 ANPVPASANIVSDLKMRLNVLVNSLVTQVNNLHRSGKTLGNPPSDGEDFFVAINPAYPLE 354

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              ++   +++              D       +  ++      A ++  V+L +Y +  
Sbjct: 355 MGNIKLNDNLADLDNIVASKSGASGDNTIALAIANLRDNRVI--ADVSGMVSLDDYYQTI 412

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           I  +    S++       + + N       + +GV++ EE+S +++ + +Y+ S++ I  
Sbjct: 413 ILIVGTGGSEAKKTAENQRTLVNSAEAQRQSVMGVSMDEEMSNMMRYKFAYSASSRAINV 472

Query: 468 TDKMLQTLLEGV 479
            D ML+T++  +
Sbjct: 473 IDDMLETIITRM 484


>gi|62317956|ref|YP_223809.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 1 str.
           9-941]
 gi|83269933|ref|YP_419224.1| flagellar hook-associated protein FlgK [Brucella melitensis biovar
           Abortus 2308]
 gi|189023207|ref|YP_001932948.1| flagellar hook-associated protein FlgK [Brucella abortus S19]
 gi|254698189|ref|ZP_05160017.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731633|ref|ZP_05190211.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 4 str.
           292]
 gi|260544141|ref|ZP_05819962.1| flagellar hook-associated protein [Brucella abortus NCTC 8038]
 gi|260759392|ref|ZP_05871740.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 4 str.
           292]
 gi|260762636|ref|ZP_05874968.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 2 str.
           86/8/59]
 gi|12330681|gb|AAG52878.1| FlgK [Brucella abortus]
 gi|62198149|gb|AAX76448.1| hypothetical FlgK, flagellar hook-associated protein FlgK [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940207|emb|CAJ13263.1| flagellar hook-associated protein FlgK, putative KO: K02396
           flagellar hook-associated protein 1 FlgK [Brucella
           melitensis biovar Abortus 2308]
 gi|189021781|gb|ACD74502.1| flagellar hook-associated protein [Brucella abortus S19]
 gi|260097412|gb|EEW81286.1| flagellar hook-associated protein [Brucella abortus NCTC 8038]
 gi|260669710|gb|EEX56650.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 4 str.
           292]
 gi|260673057|gb|EEX59878.1| flagellar hook-associated protein FlgK [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 484

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 236/484 (48%), Gaps = 5/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y  + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++   IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLLGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S+ ++     ML  L
Sbjct: 421 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSWVLTTVSAMLDDL 480

Query: 476 LEGV 479
           L  V
Sbjct: 481 LNAV 484


>gi|163738040|ref|ZP_02145456.1| Flagellar hook-associated protein [Phaeobacter gallaeciensis BS107]
 gi|161388656|gb|EDQ13009.1| Flagellar hook-associated protein [Phaeobacter gallaeciensis BS107]
          Length = 482

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 188/487 (38%), Gaps = 18/487 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57
           MS+ +  N A      A +  + +  N+ N     Y RR    T +      V V   + 
Sbjct: 1   MSITSALNSAMTGLTAAGRSTSVVSENLSNVLTPGYSRRSLALTSAGDGFSGVKVGHVQR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            N       + + +S +G   +  +F      +        S T  ++     L      
Sbjct: 61  INDPALQSSVRSANSEVGVAEVKSAFFGRMTELVGSADDPYSITQRLTDFDSGLIEVISR 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                    +   AEE+V++   +A  ++  R  AD+ I++++  + + L +L  +N  I
Sbjct: 121 PDSGPRLNDLAIQAEELVRSIADAAEGLRNQRTAADRAIDVQVDTVNQSLEKLQKLNAKI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
               ++  D+   LDQRD+L+ ++++II +  + R+   + +++  G  L +    +++F
Sbjct: 181 AISQSTGSDSASLLDQRDLLIDEVNKIIPVKVVNRDRGQVALFSEGGAVLLDGQAAELSF 240

Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           +                + + I+G+ V++  G  V  G + A  ++RD +    Q  LD 
Sbjct: 241 DGKADTLPYMTLGNGLLSGLQINGIDVATGPGGPVRGGTLAAQFEVRDVLTVEAQEDLDA 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRSNPS 349
           MA+ LI  F +       +   PG+F   G              I     +  Q ++   
Sbjct: 301 MAKDLIERFQDPALDPTLTATDPGIFTDQGAFFDPANTVGIANRIELNDKIAMQGQAETW 360

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            LRD               AG   L+  Y D+ +       V     N+     + N + 
Sbjct: 361 RLRD------GLNAASPGNAGDATLLRGYADALDAKRTVSSVGLGTANLDASTLSANLLS 414

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
              ++ + +      +   +  + +      GV+   EL  LI +E+ Y  + ++I   D
Sbjct: 415 RFAQSENSAEQNVAFAAATYTEMYQRELAQ-GVDSDAELQNLIVIEKVYQANARMISVVD 473

Query: 470 KMLQTLL 476
           ++++TLL
Sbjct: 474 ELMETLL 480


>gi|125974729|ref|YP_001038639.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           ATCC 27405]
 gi|125714954|gb|ABN53446.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           ATCC 27405]
          Length = 489

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 181/492 (36%), Gaps = 26/492 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            A    A++      +  +    N+ N + K Y R+  M T +              ++ 
Sbjct: 3   FAGLEIARSGMYVNERALSVTGHNVANVNTKGYARQQAMITTAPYLNLMRYQIGLGASIQ 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R       D +    ++ +G            + +  D   +    + +++  ++ + 
Sbjct: 63  ETRQIRHLFLDNIYRNENTELGYWETRSKTFQEIQTILGDPMGD-GLQNVLNQFWNAWQE 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            SK      +   V   AE +V   N    ++ K++ D +++I L I  +     ++  +
Sbjct: 122 LSKEPDSLTVRALVRQRAEALVHQINHLGAQLDKLQEDLNQQIVLTIKQINDITKQIAEL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I  +     +A+D+ DQR++LL ++S++         N D+ V       + +    
Sbjct: 182 NVKIMQEEVCGDNANDYRDQRNLLLDELSKLADFEFTEMQNGDVQVTLGGYILVTK---- 237

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQ 287
               E++N     S+ N +F    +   N    V  G ++ LL+ R  V      +    
Sbjct: 238 ---GEQINLVAGKSDINKMFFVPKIEGENIEVPVKSGVLRGLLESRGDVSGSIEGITDPA 294

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                 +  ++     +  +  NS       +    K L N    G    + +NP Y   
Sbjct: 295 ANPVPASANIVSDLKMRLNVLVNSLVTQVNNLHRSGKTLGNPPSDGEDFFVAINPAYPLE 354

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              ++   +++              D       +  ++      A ++  V+L +Y +  
Sbjct: 355 MGNIKLNDNLADLDNIVASKSGASGDNTIALAIANLRDNRVI--ADVSGMVSLDDYYQTI 412

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           I  +    S++       + + N       + +GV++ EE+S +++ + +Y+ S++ I  
Sbjct: 413 ILIVGTGGSEAKKTAENQRTLVNSAEAQRQSIMGVSMDEEMSNMMRYKFAYSASSRAINV 472

Query: 468 TDKMLQTLLEGV 479
            D ML+T++  +
Sbjct: 473 IDDMLETIITRM 484


>gi|256005260|ref|ZP_05430227.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           DSM 2360]
 gi|255990811|gb|EEU00926.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           DSM 2360]
 gi|316941863|gb|ADU75897.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           DSM 1313]
          Length = 489

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 180/492 (36%), Gaps = 26/492 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            A    A++      +  +    N+ N + K Y R+  M T                ++ 
Sbjct: 3   FAGLEIARSGMYVNERALSVTGHNVANVNTKGYARQQAMITTGPYLNLMRYQIGLGASIQ 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R       D +    ++ +G            + +  D   +    + +++  ++ + 
Sbjct: 63  ETRQIRHLFLDNIYRNENTELGYWETRSKTFQEIQTILGDPMGD-GLQNVLNQFWNAWQE 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            SK      +   V   AE +V   N    ++ K++ D +++I L I  +     ++  +
Sbjct: 122 LSKEPDSLTVRALVRQRAEALVHQINHLGAQLDKLQEDLNQQIVLTIKQINDITKQIAEL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I  +     +A+D+ DQR++LL ++S++         N D+ V       + +    
Sbjct: 182 NIKIMQEEVCGDNANDYRDQRNLLLDELSKLADFEFTEMQNGDVQVTLGGYILVTK---- 237

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQ 287
               E++N     S+ N +F    +   N    V  G ++ LL+ R  V      +    
Sbjct: 238 ---GEQINLVAGKSDINKMFFVPKIEGENIEVPVKSGVLRGLLESRGDVSGSIEGITDPA 294

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                 +  ++     +  +  NS       +    K L N    G    + +NP Y   
Sbjct: 295 ANPVPASANIVSDLKMRLNVLVNSLVTQVNNLHRSGKTLGNPPSDGEDFFVAINPAYPLE 354

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              ++   +++              D       +  ++      A ++  V+L +Y +  
Sbjct: 355 MGNIKLNDNLADLDNIVASKSGASGDNTIALAIANLRDNRVI--ADVSGMVSLDDYYQTI 412

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           I  +    S++       + + N       + +GV++ EE+S +++ + +Y+ S++ I  
Sbjct: 413 ILIVGTGGSEAEKTAENQRTLVNSAEAQRQSIMGVSMDEEMSNMMRYKFAYSASSRAINV 472

Query: 468 TDKMLQTLLEGV 479
            D ML+T++  +
Sbjct: 473 IDDMLETIITRM 484


>gi|126652479|ref|ZP_01724651.1| flagellar hook-associated protein K [Bacillus sp. B14905]
 gi|126590750|gb|EAZ84865.1| flagellar hook-associated protein K [Bacillus sp. B14905]
          Length = 530

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/524 (12%), Positives = 169/524 (32%), Gaps = 47/524 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       ++           +   NI NA+   Y R+      +               
Sbjct: 3   STFMGLEASKRGLFVQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPTYPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +       D+     ++ +G      +  A  E +  ++          
Sbjct: 63  HLGTGVEASSIQRIRSEFIDRQYRQETNKLGYWESRTNAIAQMEDVM-NEPSEFGLDKAF 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +    L+  +   ++    +  I  AE + ++FN   ++++ I+ +   E+ +  + + 
Sbjct: 122 EQFWKGLQDIATKPADGASRQVAISRAEHLAESFNYLDKQLKMIQGNLGNELNVSTTQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  VN  I+    S H  +D  D RD L+ K++E I +S     +  +    ++G
Sbjct: 182 TILKQIAAVNKQIQEVEPSGHVPNDLYDVRDTLVDKLNEYIPVSIERIPSGGLASEVAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVV 283
           +        D     + +    ++   +  +G  V+ +   ++  + ++  L  +     
Sbjct: 242 SLKITFKGADGVVRDLVNGKDFAQFTAMGTNGTKVTGDDITNSFSELQLTGLESLDAHEA 301

Query: 284 PIFQNQLDEMARVLIGSFSE----------KDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
               +    + +    +                  G+ +      +    +  +  + + 
Sbjct: 302 GAVTSTQTAIKQQDFEASKGKLLSLINSFGYQSAGGDIKGYYTETLQKLDQLANAFIKEF 361

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            ++          + +      S      +      G     +   +        DP   
Sbjct: 362 NAQHAKGYTLEEKDANGNIINASKPGGVFFEGTGAGGIKVNEDIKKNPNLLAASSDPTEE 421

Query: 394 INT------------------NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
            N                   N +L  + +  +G +  +  ++  L   S+     + +S
Sbjct: 422 GNGKNAYELANMQHKLYADIDNASLQSFYQAIVGKVGVDGEEALRLAASSESQLQMVFKS 481

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   V+L EE++ +I  +Q+YN + ++I   D+ L  ++ G+
Sbjct: 482 RDSVSAVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGM 525


>gi|169826733|ref|YP_001696891.1| flagellar hook-associated protein FlgK [Lysinibacillus sphaericus
           C3-41]
 gi|168991221|gb|ACA38761.1| Flagellar hook-associated protein 1 (HAP1) [Lysinibacillus
           sphaericus C3-41]
          Length = 530

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 170/524 (32%), Gaps = 47/524 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       ++           +   NI NA+   Y R+      +               
Sbjct: 3   STFMGLEASKRGLFVQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPTYPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +       D+     ++ +G      +  A  E +  ++          
Sbjct: 63  HLGTGVEAGSIQRIRSEFIDRQYRQETNKLGYWESRTNAIAQMEDVM-NEPSEFGLDKAF 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +    LE      ++    +  I  AE + ++FN   ++++ I+ +   E+ +  + + 
Sbjct: 122 EQFWKGLEDVGTKPADGASRQVAISRAEHLAESFNYLDKQLKMIQGNIGNELNVSTTQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  VN  I+    S H  +D  D RD L+ K++E I +S     +  +    ++G
Sbjct: 182 TILKQIAAVNKQIQEVEPSGHVPNDLYDVRDTLVDKLNEYIPVSIERIPSGGLASEVAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVV 283
           +        D     + +    ++   +  +G  V+ +   ++  + ++  L  +     
Sbjct: 242 SLKITFKGADGVVRDLVNGKDFAQFTAMGTNGTKVTGDDITNSFSELQLTGLESLDAHEA 301

Query: 284 PIFQNQLDEMARVLIGSFSE----------KDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            +  +    + +    +                  G+ +      +    +  +  + + 
Sbjct: 302 GVVTSTQTAIKQQDFEASKGKLLSLINSFGYQSAGGDIKGYYSETLQKLDQLANAFIKEF 361

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            ++          + +      S      +      G     +   +        +P   
Sbjct: 362 NAQHAKGYTLEEKDANGNIINASKPGGVFFEGTGAGGIKVNEDILKNPNLLAASANPTEE 421

Query: 394 INT------------------NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
            N                   N +L  + +  +G +  +  ++  L   S+     +S+S
Sbjct: 422 GNGKNAYELANMQHKLYADIDNASLQSFYQAIVGKVGVDGEEALRLAASSESQLLMVSKS 481

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   V+L EE++ +I  +Q+YN + ++I   D+ L  ++ G+
Sbjct: 482 RDSVSAVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGM 525


>gi|163758033|ref|ZP_02165121.1| hypothetical protein HPDFL43_00370 [Hoeflea phototrophica DFL-43]
 gi|162284322|gb|EDQ34605.1| hypothetical protein HPDFL43_00370 [Hoeflea phototrophica DFL-43]
          Length = 487

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 161/487 (33%), Positives = 254/487 (52%), Gaps = 7/487 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N AQ   +N S Q   + RNI NA N +Y RR+   + +     VV+ +    
Sbjct: 1   MSLTTAINTAQTSLSNTSTQTNIVSRNIANASNPDYNRRNAALSTNVYGAQVVSIQRAQD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +     +S+   Q+ L +     + +   + Y  SP   +  LRD+L +++    E
Sbjct: 61  QALFQQSIKSASSSSGQQSLLTGLTTLKGIFGGNDYEQSPAALLGTLRDTLSTFAAQPGE 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L ++ I +A+ +       +  VQ++R DAD+EI+ E+ NL   LS     N+ +   
Sbjct: 121 NTLAQSTIADAQILAAGLRDGSAAVQRVRLDADQEIQREVDNLNELLSRFETANNNVYQG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T ++ D    LD RD LL++IS+IIG++ I R+ NDM +YTSDGTTLFETV R + F+  
Sbjct: 181 TQARRDVSAHLDDRDSLLKQISQIIGVTPITRSGNDMALYTSDGTTLFETVARPVTFDSS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             ++ T + N +++DGV + + QGS+   KG I+ LLQIRD + P  Q QLDE+AR L+ 
Sbjct: 241 AGFSATIQGNGVYVDGVPLPAGQGSSSTAKGTIQGLLQIRDDIAPKLQTQLDEIARALVV 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------QGISETICVNPQYRSNPSFLRD 353
           SF+E D  A  +              +             I+    + P    +P  LRD
Sbjct: 301 SFAETDQSATPTLPDEPGLFTWSGGTVPAGSTLVPGISATITVNPALVPSLGGDPKLLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           GG     +  N    A +   ++ +  + +    FD  AG++T+ +LL++A +SIGWLE 
Sbjct: 361 GGINGAAYNANPAGAASFSAQLDSFVVAIDNPTGFDATAGLSTSTSLLDFAADSIGWLEL 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           NRS++       +       E+YSN  GV++ EE+S L+++EQSY  S +LI   D+MLQ
Sbjct: 421 NRSEADSAAQTREAFMFRAEEAYSNDTGVSIDEEMSMLLELEQSYKASARLISAVDEMLQ 480

Query: 474 TLLEGVK 480
            L+  V+
Sbjct: 481 ALMSVVR 487


>gi|295707173|ref|YP_003600248.1| flagellar hook-associated protein FlgK [Bacillus megaterium DSM
           319]
 gi|294804832|gb|ADF41898.1| flagellar hook-associated protein FlgK [Bacillus megaterium DSM
           319]
          Length = 507

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/512 (15%), Positives = 181/512 (35%), Gaps = 46/512 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +       +I  N+ NA+   Y R+                      
Sbjct: 3   STFHGLQVAKRGMDAQQAALYTIGHNVSNANTPGYTRQRVSLETFPAYPAPGMNQTGTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   T         D      +  +G            E +  ++   +  +   
Sbjct: 63  QIGMGVEASTVERIRDTFLDTQYRDETIKVGYWDARAGALEKMEEIM-NEPTEDGLSAVF 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++  +S++  + + SE      +I+ AE V   F+  +  ++ ++ D   E ++ ++ + 
Sbjct: 122 NQFFESIQDVASHPSESGARSVMIERAEAVGDTFSYLSTSLKTVQGDLQNERDVAVTQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L +++ VN  I+    + +  +D  D+RD LL +IS+ + +S     ++     TS+G
Sbjct: 182 SLLEQISNVNQQIQNIEPNGYLPNDLYDERDRLLDEISKFMPVSLEYTKSSGNASATSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS--------AVPKGKIKALL 276
               +          ++  T    +  +  +     +            + P+GK+K L+
Sbjct: 242 VVTVQLQTSQGAITLLDGKTHQVNAISLKTNQDSYVTEIHIGDEIRNPESFPQGKLKGLI 301

Query: 277 QI---------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           +          +  V     + LDEMA   +  F++K       +   G+   + I   +
Sbjct: 302 EASGYIDNSGNKTGVYASMIDDLDEMAYEFVNWFNDKHQQGVTLDGDTGMSFFNEISQKE 361

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                 +      +       +     G        + KN               ++   
Sbjct: 362 GAATGIVIANKIKHNTNNIAAASSASSGDNGTGRKGDGKN-----------AQLLSQFRQ 410

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +   N  V+L  + ++ IG +  +   ++ L   S+ +   + +   +T  V+L EE
Sbjct: 411 QVLINSGNQAVSLDGFYQSVIGQMSVDAQQANRLKSNSETLQGAVEQRRQSTSAVSLDEE 470

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++ +I+ + +YN S +++   D+ML  ++ G+
Sbjct: 471 MTNMIQFQHAYNASARMVTMIDEMLDKIVNGL 502


>gi|169831934|ref|YP_001717916.1| flagellar hook-associated protein FlgK [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638778|gb|ACA60284.1| flagellar hook-associated protein FlgK [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 532

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 168/533 (31%), Gaps = 56/533 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+   +   Q   +   NI N +   Y R++ +   +              
Sbjct: 1   MS-FLGIEIARRSLHGHQQAMNTTAHNIANINTPGYKRQEAVLQSTPAIAYPSVFSPRPG 59

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                ++ V  +  +    D+ +    SAIG    +++     E +   +  +      +
Sbjct: 60  QLGTGMSAVEIKRYSDAYLDRQVREAQSAIGYWSGVETALQRVEAVL-PEPTDFGIQALL 118

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEIS 161
                +     ++ +       V   AE +  + + +   +  +R D    +     ++ 
Sbjct: 119 GNFFSTWHYLVQDPANPGSRSAVRGAAETLANSLSLAYYSLTNVRNDLIGGNDLFAQQVG 178

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +     ++  +N  I ++  +  + +D L++RD LL ++S++  +S  V N    +V  
Sbjct: 179 RINSIGRQIAELNREIAYQRTAGANPNDLLNRRDYLLDELSKLADVSVTVTNAELNLVSV 238

Query: 222 SDG----TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG------- 270
           S            +  D  F ++ +   + ++    ++G       G+            
Sbjct: 239 SVYGLELVNGDGYLATDRGFTELAADHESLQNLIEALEGSTRGGLAGTFAVGARVKEYLK 298

Query: 271 -----------------KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                             ++      + V           A  L   +   + +    + 
Sbjct: 299 QLELLMLSLANAVNGVLALEFFAFNIERVTGETAAGGGTDAHRLANGWLIANTVTITVDG 358

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYR----SNPSFLRDGGSVSKKFLWNVKNLA 369
            P     +G +         + +TI    Q+        + + D    +       +   
Sbjct: 359 NPFEVYFEGDELPPGSGDWVLVDTITGTLQFGRIIEGTETIVADYDYKTGPISIGPEAEG 418

Query: 370 GYPDLINHYCDSFNK---NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
               +      +  +     + D       + TL  Y +  +  +  + + +        
Sbjct: 419 ALAQVTAEQAWAVAQIREQRVVDADGDGEDDTTLDGYYQQLVTGIGADLNAAQRGRDNVS 478

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +   I     +  GVNL EEL+ +I+ +  Y  + ++I   D++L TL+  +
Sbjct: 479 AILGQIEALRESVSGVNLDEELTRMIQYQYGYQAAARVITVLDELLDTLINRM 531


>gi|294501824|ref|YP_003565524.1| flagellar hook-associated protein FlgK [Bacillus megaterium QM
           B1551]
 gi|294351761|gb|ADE72090.1| flagellar hook-associated protein FlgK [Bacillus megaterium QM
           B1551]
          Length = 507

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/512 (14%), Positives = 177/512 (34%), Gaps = 46/512 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +       +I  N+ NA+   Y R+                      
Sbjct: 3   STFHGLQVAKRGMDAQQAALYTIGHNVSNANTPGYTRQRVSLETFPAYPAPGMNQTGTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   T         D      +  +G            E +  ++   +  +   
Sbjct: 63  QIGMGVEASTVERIRDTFLDTQYRDETIKVGYWDARAGALEKMEEIM-NEPTEDGLSAVF 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++  +S++  + + SE      +I+ AE V   F+  +  ++ ++ D   E ++ ++ + 
Sbjct: 122 NQFFESIQDVASHPSEAGARSVMIERAEAVGDTFSYLSTSLKTVQGDLQNERDVAVTQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L +++ VN  I+    + +  +D  D+RD LL +IS+ + +S     ++     TS+G
Sbjct: 182 SLLEQISNVNQQIQNVEPNGYLPNDLYDERDRLLDEISKFMPVSLEYTKSSGNASATSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS--------AVPKGKIKALL 276
               +          ++  T    +  +  +     +            + P+GK+K L+
Sbjct: 242 VVTVQLQTSQGPITLLDGKTHQVNAISLKTNQDSYVTEIHIGDEIRNPESFPQGKLKGLI 301

Query: 277 QI---------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           +          +  V     + LDEMA   +  F++K       +   G+   + I   +
Sbjct: 302 EASGYIDNSGNKTGVYASMIDDLDEMAYEFVNWFNDKHQQGVTLDGDTGMSFFNEISQKE 361

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                 +              +     G        + +N             +     +
Sbjct: 362 GAAAGIVIADKIKQNTNNIAAASSASSGDDGTGRKGDGQNAQLLSQFRQKVLINSGSQAV 421

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
                      +L  + ++ IG +  +   ++ L   S+ +   + +   +T  V+L EE
Sbjct: 422 -----------SLDGFYQSVIGQMSVDAQQANRLKSNSETLQGAVEQRRQSTSAVSLDEE 470

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++ +I+ + +YN S +++   D+ML  ++ G+
Sbjct: 471 MTNMIQFQHAYNASARMVTMIDEMLDKIVNGL 502


>gi|220927554|ref|YP_002504463.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum
           H10]
 gi|219997882|gb|ACL74483.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum
           H10]
          Length = 537

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/530 (15%), Positives = 175/530 (33%), Gaps = 58/530 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVT 51
               N A +    A +   ++  N+ NA    Y R+ ++ + S                 
Sbjct: 5   FFGLNIALSGLYTAQRNLDTVGHNLSNASTPGYSRQQSIQSASNPLAVMDGTGMVGTGSQ 64

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V           D    + + A G+           ++   ++   +     +    DSL
Sbjct: 65  VTGVERIRDTYLDFKYWSENVANGEWSKKAELMGEIQVTF-NEPSKSGFVKIMDGFFDSL 123

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SK+ S       V+  A  + + FN +A   ++ + D + +++ ++  +    S++ 
Sbjct: 124 QELSKDPSSGAARALVVQKATTLAKYFNNTATHFEQFQNDINDQVKTDVDQINIIASQIQ 183

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVYTSD 223
           ++N  I     +   A+D  D R +L+ ++S++  I              ++     T  
Sbjct: 184 LLNKQIYNYELTGGTANDLRDSRTLLVDQLSKLANIQAKEIPYGKLPNGEDDIHFQITLS 243

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-- 281
           G TL +            +  +  E      D      N  + +  G+++ LL +RD   
Sbjct: 244 GKTLVDHFSATKLIVVQRNIKLNEEDIGNLYDIKWEDGNSVN-ITGGELRGLLDVRDGKD 302

Query: 282 ---------VVPIFQNQLDEMARVLIGSFSE------------------------KDPIA 308
                     VP +Q +L+E  R    +F+E                         D   
Sbjct: 303 GIDGTPIYKGVPYYQRKLNEFVRTFAINFNEGYTRNDALPDGYEHNGVGHIEGYGYDSDL 362

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            ++      F    + D        I     V               SVS   + +   +
Sbjct: 363 TDAPTGIRFFTMLCVGDTPISGSAFIGTATSVGDIANQYNQITAKNFSVSSDIIDDANRI 422

Query: 369 A-GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           A    D  N   +   K         +       ++ ++ +  +  +   +       + 
Sbjct: 423 ATSDADGQNGNTNILKKLMGIRSNQSLFKEGAPEDFMKSLVAGMGIDAQQAETFAKTQKA 482

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +  GVNL EE++ ++K +QSYN + ++I+   ++  TL+ 
Sbjct: 483 LVRQVDNRRMSVSGVNLNEEMTNMVKFQQSYNAAARMIVTMGEIYDTLIN 532


>gi|23099962|ref|NP_693428.1| flagellar hook-associated protein FlgK [Oceanobacillus iheyensis
           HTE831]
 gi|22778193|dbj|BAC14463.1| flagellar hook-associated protein 1 [Oceanobacillus iheyensis
           HTE831]
          Length = 490

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/496 (13%), Positives = 158/496 (31%), Gaps = 28/496 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           M        ++           +   NI NA+   Y R+                     
Sbjct: 1   MGTFYGLEMSRQALAAQQSALYTTGHNISNANTPGYTRQRVNLEAMNGFPYASRNRPNMP 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V   + +       D    + +++ G      +  +  E +  ++  ++  +  
Sbjct: 61  GQMGTGVEAGSVQRIRNQFLDNQFRSENNSSGYWTEKANALSRMENVM-NEPSDSGLSKT 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +++   SL+  + N         V+     +   FN  +  +  IR D   +I+  + + 
Sbjct: 120 MNQFWQSLQDLAVNPDNAGARSVVLQRGHALADTFNYISSSMSTIRTDLSNQIDTTVKDA 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              +  +  +N+ IK      +DA+D  D+RDVLL ++S I+ I     N++        
Sbjct: 180 NSLIDNIDNLNEQIKNLETHGYDANDLYDKRDVLLDELSGIVNIKVTYDNSHAKNRADG- 238

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              +      + + + + +     E     I+    +  + + +   +   +        
Sbjct: 239 ---VATVEVLNDSGDSIATLVDGVEGTVNHIEAPTYNEGEENDLTVIEDIQVNGESILSS 295

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               + L E    +       D     S      +      +  +               
Sbjct: 296 KGSLSGLVESYGYMEDGERVGDYPEMMSRLDELAYSIATSFNEIHSEGDSGVPFFGELTD 355

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            +     +       +    +    AG  DL +   D F           +    ++ +Y
Sbjct: 356 EKGAAGAISVILEDYEDINASADGEAGSGDLASDLADIFTNP------NDLLDGASINDY 409

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + IG L      ++ +   +  + + +     +   V+L EE+S +IK + +YN + +
Sbjct: 410 FGSIIGDLGVKSEQAYTMQENTMTLQHQVENQRLSISAVSLDEEMSNMIKFQHAYNAAAR 469

Query: 464 LIMFTDKMLQTLLEGV 479
            +   D+M+ T++  +
Sbjct: 470 GMTTMDEMIDTIINRM 485


>gi|302037635|ref|YP_003797957.1| first flagellar hook-filament junction protein FlgK [Candidatus
           Nitrospira defluvii]
 gi|300605699|emb|CBK42032.1| First flagellar hook-filament junction protein FlgK [Candidatus
           Nitrospira defluvii]
          Length = 464

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/491 (14%), Positives = 174/491 (35%), Gaps = 38/491 (7%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS L  +F    N      +  +   +NI N     Y R++   + S             
Sbjct: 1   MSGLNGLFGIGSNALATFQRALSVTGQNIANVSTPGYSRQEITLSESLPENGQPGQIGTG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VT    R    +  ++ L + +  +GQ        +  +++  +D  +      +++   
Sbjct: 61  VTATEIRRSVDSFVEQQLLSSNERVGQFGASHKALSQIQLVF-NDANDQGIAAGLNEFFK 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + +  + N ++      ++  A+ + +  N +  ++   R   D +++  I+++    S+
Sbjct: 120 AWQDVATNPADLTARTVLLTKADGLTKLLNQADAQLSAQRTSLDGQVQSGINDVNALASK 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  IK    S   A+D  DQR   L  ++ ++ IS+I      + V+   G  L  
Sbjct: 180 IADLNSQIKLTEISGQQANDLRDQRGRFLNDLAGLVDISSIEDATGQVTVFVGIGQVLVA 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      N        +  +  G   +++  SA+  G++K L+  RD+     Q  
Sbjct: 240 EKTAYRLTGVAN-IANNGLLDVRYDGGTGPNTDITSAISGGRLKGLIDARDTTAAGLQTS 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+ +   L+   + +  +    +                 +   +++             
Sbjct: 299 LNTLTAQLVSQVNTQHRLGYGLDGSTTQDFFTASGTTAGTISMALTDRQK---------- 348

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                          +   +    +  +  ++   + +         N T   Y     G
Sbjct: 349 ---------------IAASSTAAGVPGNNVNALALSNLQTASVAGLGNTTFQGYYSAMAG 393

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                   +       +++ + +    +   GV++ EEL  L+K ++++  ++KLI  +D
Sbjct: 394 SFGGTLQGATRDLQGQEILHDQLLAHRAEVSGVSMDEELINLLKYQRAFEAASKLITTSD 453

Query: 470 KMLQTLLEGVK 480
           +MLQT+L   +
Sbjct: 454 EMLQTILTLKR 464


>gi|317130315|ref|YP_004096597.1| flagellar hook-associated protein FlgK [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475263|gb|ADU31866.1| flagellar hook-associated protein FlgK [Bacillus cellulosilyticus
           DSM 2522]
          Length = 550

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 67/543 (12%), Positives = 175/543 (32%), Gaps = 66/543 (12%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+           +   NI NA+   Y R+    + +               
Sbjct: 4   STFHGLETARRAMTTHQSALHTTGHNIANANTPGYSRQRVNFSTTEAFPTPAFNMPNMPG 63

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V     +   +   D    + ++  G      +     E +  ++   +     +
Sbjct: 64  QIGTGVKAGEVQRIREAFLDTQFRSENNKNGYWTARHNALEKMEDIM-NEPTESGLASTM 122

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   SL+  S +  +      V      V + F  + + +Q I+ D   EI ++   + 
Sbjct: 123 DRFWQSLQDLSVHPEDAGARSVVRQRGIAVAETFQYTYQSLQAIQEDYRSEIGVQQDRIN 182

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             + ++  +N  I          +D  DQRD+L+ ++S  + ++    ++       + G
Sbjct: 183 SLIRQINNINKQISQVEPHGLLPNDLYDQRDLLVDELSGFMNVTVETVSSGGNASPQATG 242

Query: 225 ---TTLFETVPRDINFEKMNSYTVTSESNPIFID-------------------------- 255
                L +   RD+    ++   +      I                             
Sbjct: 243 RYTIKLADEHGRDMGVTLVDGARLERTELHISYSDDGLVQGLHVANERALNQVENASEIK 302

Query: 256 ----GVVVSSNQGSAVPKGKIKALLQIRD---------SVVPIFQNQLDEMARVLIGSFS 302
               GVV  +N  +    G ++A ++               P     LD M    +   +
Sbjct: 303 DLTSGVVHMNNLDAFRSPGALRATIETHGYIDRNGQVRGDYPEMMANLDLMVFTFVEELN 362

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-----NPSFLRDGGSV 357
                  +   +     A+  + +        +     N +  +     N + + +  ++
Sbjct: 363 AVHSSGWSLSEIEAGVKANDGEGIPFFTFAENANISSDNMKGAAQFLQVNRAIIEELDNI 422

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRS 416
           +     +  N            ++     + D       + T +  + ++ IG +  + +
Sbjct: 423 AASGFTSNPNEPLSEGFAGDGSNALALANVKDKNLSFGGSTTNVQSFYQSVIGNMAVDLN 482

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +++ +   ++ + + + +   + +GV+L EE++ +I+ + +YN + + I   D+ML  ++
Sbjct: 483 EANRMMKNTETLRDSVEDRRQSVMGVSLDEEMTNMIQFQHAYNAAARNITMIDEMLDIII 542

Query: 477 EGV 479
             +
Sbjct: 543 NRM 545


>gi|206895941|ref|YP_002246669.1| flagellar hook-associated protein FlgK [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738558|gb|ACI17636.1| flagellar hook-associated protein FlgK [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 540

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/537 (13%), Positives = 174/537 (32%), Gaps = 67/537 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TISPE 48
               A+               NI N +   Y R++ +                       
Sbjct: 4   SLEIAKRSLQAQMLALDVTSHNIANVNTPGYSRQEAVFRPTQPYGIVSWLGTINPGQVGT 63

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V + + R    +  D      +S      +     ++ E  S ++  ++     +S   
Sbjct: 64  GVQISSIRRLRNDFVDMNYRNVTSESSYYSVKDQVFSILES-SINEIKDSGLQKALSDFF 122

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           D+    S +  +  + + +++ ++ ++  F     ++   R+D D +I   ++ +     
Sbjct: 123 DAWHEGSVSPEDPTVRRIIVEQSQNLIDAFKYVQNQLVSTRSDVDFQIVNSVARINDIGK 182

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           E+  +N+ I   T+     +D LDQRD LL ++S+ + I  +      + V+    + + 
Sbjct: 183 EIAKLNEQISLSTSQGQQPNDLLDQRDNLLDELSQYVNIQKVALPTGSVSVFIGGLSFVD 242

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFID--------------------------------- 255
           +    +I     +    + E                                        
Sbjct: 243 DRTVNEIKAIDNDRLIDSGEGYKYTEGLATYSVLPGLIQNDKWNESIALGTEDIYNGHVS 302

Query: 256 ------GVVVSSNQGSAVPKGKIKALLQIRDSVVP-------IFQNQLDEMARVLIGSFS 302
                 G  +       +  GK+K L+++RD V+            +++EMA       +
Sbjct: 303 TLWLTMGNSLVPLDDRHLAGGKLKGLVEMRDDVIAYGEEPGRGLLGKINEMAYYFFDKIN 362

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV-SKKF 361
                  +                 N + + I   + ++P   S+P+ L  G +  +   
Sbjct: 363 LMLKQGKDLNGDAYSSNFFNWD--VNVVPKNIISAVALDPTVVSDPTKLPIGVTGLAGDG 420

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
              +       + +    +  N       + G     ++ +  R  +     + S +   
Sbjct: 421 SLALLIAQEQNNALETVPEILNSTLWNPSLPGFLKGQSVAQSWRTLVAEWSADISRNRAF 480

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +  V + ++   ++  GVNL EE   LI+ ++ Y +S +++   D ML  ++  
Sbjct: 481 MEGTNNVKSELTLLRTSESGVNLDEEAVNLIRFQKGYAMSARIVSVVDGMLDLIINM 537


>gi|299536009|ref|ZP_07049328.1| flagellar hook-associated protein FlgK [Lysinibacillus fusiformis
           ZC1]
 gi|298728614|gb|EFI69170.1| flagellar hook-associated protein FlgK [Lysinibacillus fusiformis
           ZC1]
          Length = 555

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/550 (12%), Positives = 162/550 (29%), Gaps = 74/550 (13%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       ++           +   NI NA+   Y R+      +               
Sbjct: 3   STFMGLEASKRGLFTQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPIYPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +       D+     ++  G      +  +  E +  D+         +
Sbjct: 63  HLGTGVEAGSIQRIRDEFIDRQYRQETNKFGYWESRSNAISQMEDIM-DEPSQFGLNAAL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +    LE  S N          I+ A+ + Q+FN    +++ I+ +   EI +    + 
Sbjct: 122 EQFWKGLEDVSTNPENASSRTVAIERAKHLAQSFNYMDTQIKTIQGNLGNEINVSTDRIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--------------- 209
             L  +  +N  I+    + H  +D  D RDVL+ +++  I +S                
Sbjct: 182 SILKRIASINKQIQEVEPNGHVPNDLYDARDVLIDELNSYIPVSIERVPSGGVASEVAEG 241

Query: 210 -----IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
                     +   +   +G           +     +    ++   +F +  +    + 
Sbjct: 242 SLTIKFKPYPSGAPIELVNGREYAAFTTTGTDATGTVASIDGNDLTKVFQEIKISKLGEP 301

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMA------------------------------ 294
              P      L  I+ + +   + +L  +                               
Sbjct: 302 PTKPAADAVGLESIKYNELEPGKGKLLSLINSYGYAEYDAGGAFSGIKGYYPEALANLDK 361

Query: 295 --RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSNPS 349
                  +F+       +   V          D     N     I+E    +    +  S
Sbjct: 362 LASTFANTFNAVHKAGYDLTGVQNGLNFFETMDGSTTINAGNIKINEEFTKDTSKLAASS 421

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              + G+                          N   +  P      + T   + +  IG
Sbjct: 422 APNEVGNGKWAIELANLQSKAIGAGGFTITVGAN-TVVIPPSTEHLDSATFNSFYQGMIG 480

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            L  +  +++ L+  S+ +   I+ + ++   V+L EE++ +I  +Q+YN + ++I   D
Sbjct: 481 KLGTDGEEAYQLNKTSENLLLSITYNRASVSSVSLDEEMTNMITFQQAYNANARMITVVD 540

Query: 470 KMLQTLLEGV 479
           + L  ++ G+
Sbjct: 541 ETLDKIINGM 550


>gi|188586845|ref|YP_001918390.1| flagellar hook-associated protein FlgK [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351532|gb|ACB85802.1| flagellar hook-associated protein FlgK [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 568

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/562 (12%), Positives = 173/562 (30%), Gaps = 85/562 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+           +   NI NA+   Y R+    + +               
Sbjct: 3   STFHGMETAKRALFAQRNALDTTGHNIANAERDGYTRQKAHMSATSPYTMPAQNMPGTAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V +      +  D  +   S   G            E +   +  ++      
Sbjct: 63  QIGTGVEVESVERMRDDFIDSQIREESRFKGNWENKNDTLKKIETLY-TEPSDSGLRSVF 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +  +SL+  SKN  +      V++    +    N    +   ++ D D+ I++++  + 
Sbjct: 122 DQFWESLQDLSKNPEDRTARTQVMERGVSLADTVNHMYGQFVNLKEDLDESIDIKVDEIN 181

Query: 165 RFLSELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               ++  +N+ I+     +  +A+D  D+RD+LL ++SE+   +    +  ++ V    
Sbjct: 182 SIGHQIADLNEQIQNIELRTNQNANDLRDKRDMLLDELSELTNYNLSEDDKGNVRVSIGG 241

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS-------------SNQGSAVPKG 270
            + +      ++ FE   +       N      + +              + +      G
Sbjct: 242 TSLVEGNRVNELEFEAEAADADNDNGNNEGNGNIYLDDQEPRGGKVKWSHTGEEVNFRDG 301

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD--------------PIAGNSENVPG 316
            +  L+  RD +V    ++L  +      SF+                     +  +   
Sbjct: 302 AMGGLMDSRDKIVQDHIDELRSVMAQFQESFNVVHSDDRAFNHYQAQAAQDGEDPFSDDV 361

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR------------------------ 352
             + +  +  ++               Y  N  ++                         
Sbjct: 362 NQVDNFFEWKNDGNELLTVNEEIQEDVYLINAGYIDNDTLSEYLDGDYDDDDLSDMGLED 421

Query: 353 --------------DGGSVSKKFLWNVKNLAGYPDLINH-YCDSFNKNFIFDPVAGINTN 397
                         D       +  N +N     +L +            FD    I+ +
Sbjct: 422 IFGDNYETQEPENMDINPNKLMYRGNGENGKRLANLKDEDIIKEVPSEDNFDNDEKISGD 481

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            T  +Y    +  L     ++  +    +++ + +        GV++ EE++ +++ + +
Sbjct: 482 TTFNDYIDAVVSDLGVEAQEAERMVENQELLVDQLENRREAVSGVSMDEEMTKMVQQQHA 541

Query: 458 YNISNKLIMFTDKMLQTLLEGV 479
           YN +++++   D+ L T++  +
Sbjct: 542 YNAASRVVTTIDESLDTIINQM 563


>gi|254464939|ref|ZP_05078350.1| flagellar hook-associated protein FlgK [Rhodobacterales bacterium
           Y4I]
 gi|206685847|gb|EDZ46329.1| flagellar hook-associated protein FlgK [Rhodobacterales bacterium
           Y4I]
          Length = 482

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/487 (18%), Positives = 169/487 (34%), Gaps = 18/487 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---TVVTQRS 57
           MS+ +  N A    + A +    +  N+ NA    Y RR          V    +   + 
Sbjct: 1   MSIYSALNSAMTGLSAAGRSSQVVAENLANALTPGYTRRVLDLNSPGAGVPGVRIGDVQR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            N  +         +  G  +    F +    +        S    +S    SL      
Sbjct: 61  LNDPVLISNRRVAEAEYGAAKAEGDFFSRISDLVGTVDDEMSLASQLSDFESSLIEAVSR 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                    +   A  +  + + +A  ++ +R +AD  I  ++  + + L E+  +N  I
Sbjct: 121 PDSQPRLNDLSVKANALADSISRTAEGLRGLRINADSAIGSQVDTVNQALKEIEKLNARI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
               A   DA    DQRD L+ +++ II ++ + R++  + +Y++ G  L +    +++F
Sbjct: 181 MVVEAGGMDAVSMQDQRDQLIDQVNAIIPVNVVRRDSGQVTLYSTGGVMLLDHKASELSF 240

Query: 238 EKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                            + + ++G  + +     +  G + A  QIRD      Q  LD 
Sbjct: 241 APSRDIMPHMTLGNGMISGLQVNGKTIGTGPDGPLRGGTLTAQFQIRDVTAVEAQEDLDA 300

Query: 293 MARVLIGSFSEKD---PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           MA  LI  F +      I      +     +         L   I     +         
Sbjct: 301 MAADLIERFQDPSLDATIGVTDAGIFTDDGSFYDPANIVGLSNRIELNDLLALDRAGETW 360

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
             RD                G   L+  Y D+ N       V     N+T    + N + 
Sbjct: 361 RFRD------GLYAAAPGDPGDSSLLQAYSDALNTTRTVSSVGLGTANMTAATLSANLLS 414

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
              ++   +      +   FN +S++     GV+   EL  L+ VE+ Y  + +++   D
Sbjct: 415 RFAQDNETAARASTFAATSFNELSQAELAL-GVDTDAELQNLMLVEKYYAANARMLSVVD 473

Query: 470 KMLQTLL 476
           ++++TLL
Sbjct: 474 ELMETLL 480


>gi|260431757|ref|ZP_05785728.1| flagellar hook-associated protein FlgK [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415585|gb|EEX08844.1| flagellar hook-associated protein FlgK [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 483

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 183/490 (37%), Gaps = 19/490 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRS 57
           MS+    N A    + AS+  A +  NI NA    Y +R      S      V VV    
Sbjct: 1   MSMSTALNNALGGLSAASRGAAVVSGNIANALTPGYAKRTLELATSQISGNGVQVVGVTR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +  +    L A  + +     +  F +  E +        S +  +    +SL + + N
Sbjct: 61  HHDPVLAANLRAADADLALNSAIADFHSRFEALVGTPDDAASVSARLVDFENSLITAASN 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                    V  + +++ +  N ++  ++++R+DAD++I   +  L   L ++  +N  I
Sbjct: 121 PGSAERLDQVARSGDDLARALNDASEGLREMRSDADRKIGSYVDTLNTTLKDIEDLNARI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  D +  LD+R VL+ +++E+I ++ + R+NN + +Y+  G  L E    +  F
Sbjct: 181 PAVQNAGGDINGLLDRRQVLIDQVNELIPVNVVARDNNRVSLYSDGGLILLEGSAAEFAF 240

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQ------GSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                           + G+ ++          + +  G + A  QIRD +    Q QLD
Sbjct: 241 TTTGDTKPHMTIGNGLLSGLEINGQPVRTSGENAQIRGGALMAQFQIRDELSIEAQVQLD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA---DGIKDLDNKLCQGISETICVNPQYRSNP 348
            +A+ LI  F             PGLF              L   I     V+P    N 
Sbjct: 301 AVAQDLIERFETPGLDPTALATDPGLFTDDGSRFSAAAPAGLASRIELNATVDPDAGGNS 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             LR              N +G    +  +    N+            ++   E +   +
Sbjct: 361 WKLR------AGLGAAAPNDSGDATQLQAFSTVLNQARPVSIPDFGTGSLRAAELSEALL 414

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                N   +      +  +   + +  +   GV+   EL  ++++EQ+Y  + ++I   
Sbjct: 415 SKAGANAHTAQSRMTFAASLHQQMEQLVAEQ-GVDSDAELQRMMQIEQAYAANARIISVV 473

Query: 469 DKMLQTLLEG 478
           D++++ LL  
Sbjct: 474 DELMEMLLRL 483


>gi|51246541|ref|YP_066425.1| flagellar hook-associated protein 1 (FlgK) [Desulfotalea
           psychrophila LSv54]
 gi|50877578|emb|CAG37418.1| related to Flagellar hook-associated protein 1 (FlgK) [Desulfotalea
           psychrophila LSv54]
          Length = 480

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 169/487 (34%), Gaps = 20/487 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
            L    N  +     + +Q      NI N + K Y ++    +             + V 
Sbjct: 3   GLFNALNAGRTSLEVSQKQIEISGNNIANVNTKGYSKQSAKLSPYPAMNFGGFFVGQGVK 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V     ++       L   S   G +    +  A  E + +    N      I    DS 
Sbjct: 63  VTDVDRQHNTFISNQLVNKSVDYGYENSKTASFAEIERIFSVSKDN--LAGDIDHFFDSW 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  S   ++ +L    +     +   FN SA E+ +++ +   +++  +S +   L +L 
Sbjct: 121 QELSTKPTDVVLRDITLQKGSVLAAKFNNSANELDQVQKNIGAQLKSGVSEVNNKLKQLG 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +ND I     +   A+   D R+ LLQ++++ IG  +   ++  + V    G  L    
Sbjct: 181 ELNDRIYQIENNGQTANGARDSRESLLQELAQTIGAQSYELSSGMVNVQLPSGLPLVNGN 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    N  T       + +     +   G+    G+   LL ++D V+P  ++ L+
Sbjct: 241 SASTIETVQNGPT-----VGLKLHTTGATRELGTKSMGGEFAGLLDLQDEVIPALEDNLN 295

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A  LI   +E        +   G    +     ++      +     N Q  +    +
Sbjct: 296 QLAYSLITKVNELHQGGAGLDGSTGHLFFEEPPHTNDVPIDPATGPSKDNWQDAARAMKV 355

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G  + +     K   G    +    ++     +   +  +N   +   +       +
Sbjct: 356 SLSG--AAQVAAAQKPTDGTSSKVGDNTNALKIADLSYALV-VNGTDSFNSFYGKITSTI 412

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               + +      ++     +     +  GV+L+EE+  LI+ + S+  S K +   D++
Sbjct: 413 GIGSNQNKLNLKGAEDALVQVKNLRDSAAGVSLEEEMISLIQFQNSFQSSAKFLSTVDEL 472

Query: 472 LQTLLEG 478
           + TLL  
Sbjct: 473 MDTLLNM 479


>gi|304407695|ref|ZP_07389346.1| flagellar hook-associated protein FlgK [Paenibacillus
           curdlanolyticus YK9]
 gi|304343178|gb|EFM09021.1| flagellar hook-associated protein FlgK [Paenibacillus
           curdlanolyticus YK9]
          Length = 508

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/503 (14%), Positives = 165/503 (32%), Gaps = 27/503 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+          ++   NI NA+   + R+      S               
Sbjct: 3   STFHSIETAKRSLFTEQANISTTGHNIANANTPGFSRQRVNLVASRPIEAPGYMRSNIPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +     +   D      + ++G+  +     +  E +  ++  ++     +
Sbjct: 63  QLGTGVEFTSITRVREKFLDDQFRNANRSLGEWSIQSDTLSKLETVF-NEPSDSGIRTVM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                S    SK+       K V +NA  +V  FN +++ +  + AD    I  +   + 
Sbjct: 122 DNFWKSWTDLSKDPESITGRKIVRENALALVDAFNETSKHLTDLDADLTTNIATKTEQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM----VVY 220
                ++ +N  IK   A   + +D +D+RD L+ ++S++I +S +   +        + 
Sbjct: 182 SIAKSVSDLNLEIKRLEAYGDNPNDLMDERDYLVDQLSKMINVSVVNTADGYDVSVGNIM 241

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV----VVSSNQGSAVPKGKIKALL 276
             DG     T  + +  +  +   V  E   + +          S   +         + 
Sbjct: 242 LVDGLNAPGTTVQALETQFNSGGVVGGEIQGLLVSRDQILKDYESQLDAMADTLVNGEIT 301

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
               +      +QL       +   +    +     N P       +           + 
Sbjct: 302 ITIPAGSTYNGSQLAADLTTTVRGINGLHNLGYLFTNPPTQADDIFVTSDGTPTITAANI 361

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            +  +              +V+      VK      +L+    D+  +        GI T
Sbjct: 362 RLSQDIIDDPMNIATSLRTAVTNGVNETVKGNNVLANLMAGLKDTKFQFSPVASQNGI-T 420

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
           N T+ E+  + IG L     +++      Q +   +     +  GV+L EE+S LIK + 
Sbjct: 421 NGTIDEFYASMIGQLGLQSQEANRQATNQQDIVTQVDSRRQSVSGVSLDEEMSELIKYQH 480

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
           +Y+ + + +   D+ L  ++ G+
Sbjct: 481 AYSAAARFMTTIDETLDKVINGM 503


>gi|15616183|ref|NP_244488.1| flagellar hook-associated protein FlgK [Bacillus halodurans C-125]
 gi|10176245|dbj|BAB07340.1| flagellar hook-associated protein 1 (HAP1) [Bacillus halodurans
           C-125]
          Length = 556

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 171/549 (31%), Gaps = 72/549 (13%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+           ++  NI NA+   Y R+                      
Sbjct: 4   STFHGLETARRGMMTQQAALRTVGHNIANANTPGYTRQRVNFVQTQAYPGVGRNAPSIPG 63

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +       D     H++  G            E +  +D  +N   + I
Sbjct: 64  QVGTGVMAGSIQRIRDAFLDLQYRQHNTQNGYWDARADALIRMEEIL-NDLDSNGLANQI 122

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++    L+  S +  +  +   + + A  +  +FN     ++++R D   EI +   +L 
Sbjct: 123 NQFWSKLQDLSGDPEDTAVRYVLREQAVSLADSFNEQYMLLEQVRDDYGNEIGVVTDHLN 182

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS+L  +N  I+    S +  +D  D++D LL +IS II I      +       ++G
Sbjct: 183 SLLSQLNEINAQIRKVEPSGYVTNDLYDEQDRLLDQISAIIPIEVQRVKSGGNPNPVAEG 242

Query: 225 TTLFETVPRDIN---------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                     I                 +  NS      S     +G    +     +P+
Sbjct: 243 AVTVTLKGTGITLVNGADKYALQQFEVTKTENSLGDEYVSGISISNGTDTVNLNVQELPQ 302

Query: 270 GKIKALLQIR--------------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE--- 312
           G +K L++                + + P    +L+ M R  + + +    I    E   
Sbjct: 303 GGLKGLIEAFGYYQDPTDIDNSEVNGIYPKMLAELNVMVRTFVEALNSAHRIGYTLEDPL 362

Query: 313 ------NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                         +       K+   I          R N   L D      + L   K
Sbjct: 363 TGEVSLGGDFFVFDENKPAGTLKVSDDILNNANNIAAARVNLDGLTDDARQQYQTLLAAK 422

Query: 367 NLAGYPDLINHYC----------------DSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           + A    L+                               +    T  T   Y R  +G 
Sbjct: 423 DFAAIRTLLEDDSSFKPGAKRAFAGDGQNALLLSEIKDIRLNFNGTASTFSNYYRGVMGR 482

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S++       +V+ +++    ++   V+L EE++ +I+ + +YN + + I   D+
Sbjct: 483 AAVETSEAVSKRDSYEVLRDNVQFERNSVSQVSLDEEMTLMIQFQHAYNAAARNITQIDE 542

Query: 471 MLQTLLEGV 479
           ML  ++ G+
Sbjct: 543 MLDRIINGM 551


>gi|229541552|ref|ZP_04430612.1| flagellar hook-associated protein FlgK [Bacillus coagulans 36D1]
 gi|229325972|gb|EEN91647.1| flagellar hook-associated protein FlgK [Bacillus coagulans 36D1]
          Length = 538

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/534 (14%), Positives = 169/534 (31%), Gaps = 56/534 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS       A+           ++ +N+ NA+   Y R+      +              
Sbjct: 1   MSTFFGLETAKRALTAQQNALYTVGQNVANANTDGYTRQRVNLQATDPYPAASMNRPAIA 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V     +       D     ++SA G         +  E +  +   ++S  + 
Sbjct: 61  GQLGTGVEAGEVQRIRDKYLDVQYRENNSAAGYWSAKSDALSKMEAVMDETSTDSSLANT 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    +SL+  S N  +      V++  + +   F+     + + + D   EI + ++++
Sbjct: 121 MEAFWESLQDLSTNPEDVSARSVVLERGQTLTDTFHYLNSTLSQYKTDVGSEISVSVNDI 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L +++ +N  I     + +  +D  D+RD L+ K+S  + ++  V+ +       +D
Sbjct: 181 NSTLKQISDLNQQIAVLEPNGYLPNDLYDKRDSLVDKLSNYLNVTVEVQKSGGNAKANAD 240

Query: 224 GTTLFETVPRDINFE-----------------------KMNSYTVTSESNPIFIDGVVVS 260
           G    +    D                            ++      E   I I G   +
Sbjct: 241 GIYNIKMAAADGTSVYLVQGSNYNAVEVQGGTDSNSDGILDGPPANGEMTGITIGGKNFA 300

Query: 261 SNQGS---AVPKGKIKALLQIRD------------SVVPIFQNQLDEMARVLIGSFSEKD 305
               +     P+GK+  L+                   P   + LD++A       +   
Sbjct: 301 VADTTGKVTFPQGKLLGLIDSYGYQYAGANGTVEAGAYPSLLDSLDKLAYTFGNVLNAVH 360

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               + +   G          D K   G           +   S   D G          
Sbjct: 361 EKGTDLKGNAGTAFFTFGTLTDYKGAAGQIAVNSSLTYDKIAASSNGDSGDGLNAINLAN 420

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                         +  +       +     + T+       IG L  +   + ++   +
Sbjct: 421 VVTFDLSSQSVQL-EGISGRLNIAALGLPLASGTITSNYEGLIGKLGVDAEQAGNMQTNT 479

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             + + +  +  +   V++ EEL+ +IK +Q+YN + ++I  TD+ML  ++ G+
Sbjct: 480 ASLLDSVDMNRKSVSSVSVDEELTNMIKYQQAYNAAARMITMTDEMLDKIINGM 533


>gi|222147590|ref|YP_002548547.1| flagellar hook-associated protein FlgK [Agrobacterium vitis S4]
 gi|221734578|gb|ACM35541.1| flagellar-associated protein [Agrobacterium vitis S4]
          Length = 484

 Score =  219 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 256/483 (53%), Gaps = 5/483 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N A     N+S Q   + +NI N+  + YV+RD  T  +      V       
Sbjct: 1   MSLSSTMNTATTSLGNSSTQSQVLSKNIANSQTEGYVKRDAATISTSTGGAQVVTTRSED 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +  K + +  S    Q  L +     + +   + Y +SP+ YI+KLRD+++SY+   SE
Sbjct: 61  AVLQKQMLSGQSQAEGQDTLNTGLDQLKALLGGNDYESSPSTYINKLRDAMQSYAAQPSE 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +T +  A++V  + N +A  +  +RA AD  I+ ++S L   LS+   VN ++   
Sbjct: 121 LSLAETAVSAAQDVATSINNTAEGISNVRAQADDAIKDDVSKLNDLLSQFETVNQSVVKA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+ +D +D LDQRD L+  IS+I+G+S++ R+NNDM +YT+DGT LF+  PR + F+  
Sbjct: 181 TATGNDPNDALDQRDKLVSDISKIVGVSSVKRDNNDMALYTNDGTVLFDKQPRTVTFDST 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y  ++E N ++IDGV V +   G+   +G I A LQIRDS+ P  Q QLDE +R LI 
Sbjct: 241 GAYGASTEGNSVYIDGVPVKAGTGGNTTAEGSIAANLQIRDSIAPQMQQQLDETSRSLIK 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNK----LCQGISETICVNPQYRSNPSFLRDGG 355
            FSE +P   +++        +G    D      + +              +P+ LRDGG
Sbjct: 301 MFSETEPSTKDNDMPGLFTWEEGTTPEDGTLVSGISESFKVNSAYVTAEDGDPTLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + WN      Y +L++ +   F     FD  AG+     +L+YA NS+GWLE  R
Sbjct: 361 ANGSNYTWNTTEGVSYSELLDDFVTGFEDKMDFDSSAGLGDTSNVLDYASNSVGWLESYR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +   +     +    +E+Y N  GVNL EELS ++ +EQSY  S KL+   D+ML++L
Sbjct: 421 STADSANETKSALSQRATEAYQNKTGVNLDEELSKMLDIEQSYKASTKLMNAVDEMLKSL 480

Query: 476 LEG 478
           LE 
Sbjct: 481 LEI 483


>gi|320354350|ref|YP_004195689.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus
           DSM 2032]
 gi|320122852|gb|ADW18398.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus
           DSM 2032]
          Length = 465

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/488 (17%), Positives = 165/488 (33%), Gaps = 36/488 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
           SLL   N  +       +    +  NI N + + Y R+                  + VT
Sbjct: 3   SLLNALNAGKTSLLTNQKSIEIVGNNIANVNTEGYSRQRAELMQIPAVNFGDFFVGQGVT 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V     +     ++ L   S   G++       A  E +      N      I+   D+ 
Sbjct: 63  VSNVSRDYSVFINRQLQEKSIEYGEETGKSDSLAELERIFNVTEDN--LASDINDFFDAW 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  + N S  +    VI     + + F +   E+  +  + +  I  E+  L   ++E+ 
Sbjct: 121 QELTANPSGQVERDVVIQRGNLLGEAFRSITDELDTVEQNMNTAIIAEVEYLNEKIAEIA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +ND I     S   A+   DQRD++++ +S+ +GI T   N   + V    G  L +  
Sbjct: 181 KLNDRINLVEISGQTANAARDQRDLIIKDLSQTLGIQTYTDNRGMLCVQLPGGMPLVQGT 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                        V      + ++ V V+ + G     GK K + ++RD  +   ++ L+
Sbjct: 241 MASTVKTVTVGTDVN-----LQLETVGVTLDIGLNNLGGKFKGMFEMRDVFIDNLRSDLN 295

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L  + + +      S  + G    + I  L                +  S    +
Sbjct: 296 TLAIDLTSAVNAEHVTGYGSNGLSGYLFFNDISALPPG-------------EIASRNVLV 342

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               +       N     G  +       +     +        TN T   +    +  +
Sbjct: 343 AITDTTQVAAAGNPSAAPGDNE------TALRIAQLEVTHKVGTTNDTFDNFFSQMVATV 396

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               + +      +Q     +        GV+L+EE+  LI+ ++ +  S K +   D+M
Sbjct: 397 GIEAARNDLALQGAQDAAVQLQNLRDGYSGVSLEEEMIDLIQYQRGFESSAKFLATVDEM 456

Query: 472 LQTLLEGV 479
           +  LL+  
Sbjct: 457 MNALLQLK 464


>gi|205375049|ref|ZP_03227840.1| flagellar hook-associated protein FlgK [Bacillus coahuilensis m4-4]
          Length = 511

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/507 (14%), Positives = 164/507 (32%), Gaps = 29/507 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS  A    A+   N +     +   NI NA+   Y R+    + +              
Sbjct: 1   MSTFAGLETAKRAMNTSQSALYTTSHNIANANTPGYSRQQVSMSTTTPFPTAGFNAPQIP 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V          +  D       + +G  +   +     E +  ++  ++     
Sbjct: 61  GQIGTGVEANAIIRIRDSFLDDQYRGEHNKLGYYQSQATALEKMEEIM-NEPSDSGLAAT 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +     SL+  + + + D     V      V + FN  +  ++ ++ D   EI +    +
Sbjct: 120 MDMFWKSLQDLAADPTNDGAKSVVRQRGIAVAETFNYLSTSIKNVQKDLQNEISVTEKQV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L+++  +N  I       +  +D  D+RD LL ++S ++ IS   + N      ++ 
Sbjct: 180 NSLLNQINNLNQQISDVEPHGYVPNDLYDRRDNLLDELSGLVDISVSYQQNGGQPHPSAV 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSES-------NPIFIDGVVVSSNQGSAVPKGKIKALL 276
           GT +      + +          + +           +  V V +   S      +  L 
Sbjct: 240 GTAVVYLSNGENSTRSAMLVGKNTVNEIKVNYNTDDLVSSVTVGAQTVSMEDFESVGKLR 299

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
            + +S      +         +    +       +E             ++         
Sbjct: 300 GLVESYGYETSSNPVNGTYANMLEELDYMAFTFANEFNAVHSSGATAAMINGAPGPAPDF 359

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD----PVA 392
                    +          +S     N+ N+A          ++ N   + +      A
Sbjct: 360 FAGEYGAAIATQKDFASKIGISNDIYQNLDNMATASTADLSMGNAENVTKLANVITTAPA 419

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
               N T   Y  + IG +     +++ L   S  +   +     +T  V+L EE++ ++
Sbjct: 420 FGAYNTTFKNYYESIIGDMAVQAQEANRLTTNSDTLRGAVENRRMSTSQVSLDEEMTNMV 479

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + + +YN + ++I  TD++L T++ G+
Sbjct: 480 QYQHAYNAAARMISLTDELLDTIINGM 506


>gi|258592553|emb|CBE68862.1| putative Flagellar hook-associated protein 1 (HAP1) [NC10 bacterium
           'Dutch sediment']
          Length = 466

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/490 (15%), Positives = 170/490 (34%), Gaps = 44/490 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
           SL A    A+           +   NI NA+   + R+    T                V
Sbjct: 3   SLQASLTMARKALQAQQVAIQTTGHNIANANTPGFTRQRVDLTPAVPFSLGSVGSLGTGV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +         + D        A+ +Q   ++  +  E++   +   N  ++ +S L  S
Sbjct: 63  DIKDITRIRDLLLDSQFRDAHQALSRQEAEEATLSQIELIVG-EPTENGLSNSMSALFAS 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  +   ++  +   V D A  +   F+      ++++ D   EI++ +  +     ++
Sbjct: 122 FQDLANYPTDLAVRSVVRDKAMALADQFHRLDDGFERLKIDLHNEIQVVVKQVNGLAQQI 181

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I         A+D  DQRD  L ++S+++G S +      + V    G TL + 
Sbjct: 182 ADLNRQIAMSEGGAGSANDLRDQRDQALDELSKLVGGSLVEDIGGQVRVTVGGGLTLVDG 241

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR---DSVVPIFQ 287
               +    +   T       + + G +++         G++  LL  R   D  V  FQ
Sbjct: 242 ----LTSVPITVDTTDPAYVRLSLGGNLLTPG------GGRLAGLLNSRNASDGFVKGFQ 291

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +QLD +A+ ++   +         +   G  +   +    N      +  I V+P   ++
Sbjct: 292 SQLDALAKAIVDKVNVVHMAGFGLDGSTGNNLFTPLVATVNA-----ARLIVVDPVIDAD 346

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +    +       N                +     + D       +VT   Y    
Sbjct: 347 VAKIAAASTAVGVPGDN--------------SQALALADLQDNSIVALGSVTFGSYLSGL 392

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  L +  + +         + + ++       GV+L EE++ LI+ +++Y  +      
Sbjct: 393 VSDLAEQEAGAKRSVNLHTTMADFLTSRRDQASGVSLDEEMTDLIRFQKAYEAAAHFANV 452

Query: 468 TDKMLQTLLE 477
            + +L TL+ 
Sbjct: 453 VNDLLGTLMS 462


>gi|310659650|ref|YP_003937371.1| flagellar hook-associated protein 1 [Clostridium sticklandii DSM
           519]
 gi|308826428|emb|CBH22466.1| flagellar hook-associated protein 1 [Clostridium sticklandii]
          Length = 518

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/515 (14%), Positives = 163/515 (31%), Gaps = 41/515 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN 49
           S  A  + A +    A +       NI N + + Y R+    +                 
Sbjct: 3   STFAGLSIASSGLFAAQRALDITGHNISNTNTRGYTRQRLNQSAQDPMNIQGGQGQLGLG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V +         M D       + +G+     +     E +  ++         +    +
Sbjct: 63  VKMQFISQVRDEMLDIKYRQEVNTLGEWEEKYNSLTQVESIF-NEPSETGIRKVVDGFFE 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            + S +K+ S        +  A  + QNFN      +K+  D+++E+E  +  +    ++
Sbjct: 122 GINSLTKDPSNPTNRSVFLQKAIGLAQNFNDMYSRFEKMVVDSNEEVEASVRAINSMATQ 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTSDGT 225
           +  +N  I         A+D  D R++L+  +S+++ +      I    +  +     GT
Sbjct: 182 IAKLNRQILESELDGSRANDLRDARNLLVDDLSKLVDLEVKNVPINNGKSSTLTILIQGT 241

Query: 226 TLFETVPRDINFEKMNSYTV---------------TSESNPIFIDGVVVSSNQGSAVPKG 270
            L   V  ++   +                       E+  +        S        G
Sbjct: 242 PLVNHVDTNVLELETGMDHPMFTDGQDIQPVSSRKDLENIKVSNIKWASGSTLVQEKLGG 301

Query: 271 KIKALLQIRDS------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
            I   LQ RD         P +   L E A     + ++      +        +     
Sbjct: 302 AIGGQLQQRDGYKDETKGAPYYVRFLSEFANTFAQALNDIHDDGYSLNGAAASGLPLFT- 360

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             +       +  + VN     +P+ L     +      N KN     +L +        
Sbjct: 361 TKNGSTNFISASELKVNQALLDDPTKLSL--GLGDGAPDNNKNAIAMLNLRSKKDFEIRL 418

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +       +    T  +  +  I  L  +  ++  +    Q +   +     +  GV+ 
Sbjct: 419 TYDTSGAQIVLGEGTPEDVLKTMIASLGVDAQEAKRMFNNQQYLTEEVDSFRLSVSGVSQ 478

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            EE+S +IK + +YN + ++I   D+M+  ++  +
Sbjct: 479 DEEMSNMIKFQHAYNAAARMITTVDEMIDVIINRM 513


>gi|306821564|ref|ZP_07455162.1| flagellar hook-associated protein FlgK [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550309|gb|EFM38302.1| flagellar hook-associated protein FlgK [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 536

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/522 (14%), Positives = 176/522 (33%), Gaps = 51/522 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50
           S  +  N A +    A +   +I  NI N +   Y R+    + +              V
Sbjct: 17  STFSGLNAATSGLFAAQRVLDTIGHNIANQNTPGYTRQRANQSAASATSIENGNYLGMGV 76

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +       + D      ++  G         A  E +   +   N  T  +++   S
Sbjct: 77  KMSSISQIRDELLDIKYRNENTKKGYWSQSNVSFAQIENIFG-EPKGNGITKALNEFFTS 135

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++S  KN  +    +T I+      +  N    + + + +DAD ++   ++++     ++
Sbjct: 136 IDSVLKNPDDPTAKQTFIETGLTFTRFVNNVIGKFETLISDADHDVNSLVTDINSKTKQI 195

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI------STIVRNNNDMVVYTSDG 224
             +N +I         A+D  D+R++L+ ++SE+  I      +T              G
Sbjct: 196 AELNKSILEAETQGGSANDLRDKRNMLIDELSEMADIRVNKSITTNNSGQKIEKYQIEIG 255

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS---------------NQGSAVPK 269
             +     + +  +++        +     +                             
Sbjct: 256 DHVVVDHDKSVEIKRVERQDHPLYAASQKYNNPASDDLKNVKVTNLYFADGQQLNMNKIG 315

Query: 270 GKIKALLQIRDS-----------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           GK+ A LQ RDS            +P +   ++E  +      ++      +     GL 
Sbjct: 316 GKLGATLQQRDSYGDPAMGNDVRGIPYYVRAVNEFVKSFAAKANDIHQKGTDKNGDKGLP 375

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
           +      +     Q  +  + +NP   ++ S L  G S ++    N + L    +     
Sbjct: 376 LF----TISGNSRQIDARNVTINPDIVNSVSKLAIGISGNQSDNKNFQELYSMRNKELRL 431

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-EKNRSDSHDLHMKSQVVFNHISESYS 437
             + N    F  +     N    +  ++ I  +   +  ++ D +     +      S  
Sbjct: 432 EINQNVQGQFKTLDLGKGN--PEDVIKSLITSVLGVDAKEAKDNYKNQVTLSLEADMSRM 489

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               V+  EEL+ ++K + +YN S ++I   D+M+  L+  +
Sbjct: 490 EVSSVSENEELTNMVKFQHAYNASARMITTVDEMIDVLINRM 531


>gi|54307275|ref|YP_128295.1| flagellar hook-associated protein [Photobacterium profundum SS9]
 gi|46911695|emb|CAG18493.1| Hypothetical flagellar hook-associated protein [Photobacterium
           profundum SS9]
          Length = 468

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/482 (14%), Positives = 157/482 (32%), Gaps = 21/482 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVTQRSE 58
           ++ N   +  N A+   +    NI NA    + R+                V V +    
Sbjct: 2   SLINIGLSGLNAANAGLSVTSHNIANAMTPGFSRQRVGFGAQVSAGSQGAGVGVSSVERM 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             N  ++ ++  + + G  ++   +    E +  +   + +    + +   +L   S   
Sbjct: 62  ADNYLNQQIYKQNGSWGFNKISSQYMQKTESLLNN--ASTNLNTGLDRFYAALSEASAAP 119

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
            +    +T++  +E +VQ FN  + ++         +++  +S     ++ +  +N++I+
Sbjct: 120 QDIAFRQTIVSQSESMVQRFNNLSSQLDGQTKQVSGQLDATVSEANTLMAGIASMNESIR 179

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              AS     D LD RD  ++++S ++ ++T   ++  + +    G  L       +  +
Sbjct: 180 DAGASGKSMTDLLDARDESVRQLSALVDVNTTYNDDGTISLTLDKGQPLVSGSSASVLKK 239

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +        N        +          G I  L+  RD  +   Q +LD MA    
Sbjct: 240 DNDGLLSLQRGNGTLALDGNI---------GGTIGGLVDYRDGELNELQRELDVMAYSFA 290

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
             F+E      +    PG  +  G+  +D             N    ++ +         
Sbjct: 291 AQFNEAHQAGFDLNGDPGKALFGGVDSIDGAAKNLTLLVDDPNQLAFASKAGEPGNSENL 350

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
           ++ +                 D+           G     +L        G      +  
Sbjct: 351 QQLIDLKNAPVSIDQTKLSIEDAETYQVAIAKFEGK----SLNNGYTGLTGDWAIKTAQI 406

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 S+ +         +  GVNL EE + ++   Q Y  + K+I    ++    L  
Sbjct: 407 EADTEASKALVGQAQGERDSISGVNLDEEAASIMTYTQMYQANAKVISTAQQLFDVTLAM 466

Query: 479 VK 480
            +
Sbjct: 467 FR 468


>gi|323703356|ref|ZP_08115006.1| flagellar hook-associated protein FlgK [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531719|gb|EGB21608.1| flagellar hook-associated protein FlgK [Desulfotomaculum
           nigrificans DSM 574]
          Length = 496

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 67/508 (13%), Positives = 151/508 (29%), Gaps = 51/508 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TISPE 48
               A+       +       NI NA    Y R++ +                       
Sbjct: 7   GLEIAKRGTMAHRKAMDVTGHNIANASTPGYSRQEAVIKPTDPWTLPGLETRMLPGQLGT 66

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              V   R       D       S  G            E +   +         +    
Sbjct: 67  GSQVTEVRRIRDYYLDVQYRQSGSYEGYWEKKLDMAKRLETVF-PEPEGRGIQDVMLNFF 125

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA---------------D 153
           +  +  + N  ++ + K V+++ +E+   F     ++  IR                   
Sbjct: 126 NDWQDLNNNPRDEGVVKAVMESGDELSAIFRQMHDQLTAIRDGIYVEGSQVIPGYTEVIS 185

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             I+ E+  +   L ++  +++ I   T +    +D LD+RD  L ++S++  I   + +
Sbjct: 186 GSIDYEVDKVNLLLKKIADISNTIVRVTQNDATPNDLLDERDNYLDELSKMGHIKVEIND 245

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           +  + VY  D T   E +       K+    + +    +  +                  
Sbjct: 246 DQTLKVYFIDETPGKEVI-------KIVGGQIVAAQVSVHRNNTDNKYYMFIDDDGNLQG 298

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
               I  + +  +        +  +        +   S  +    I D + +L       
Sbjct: 299 TEPSINLTDMAEYNPAYPGSGQGSV--------LGLESARIENKEILDRLNNLAAAFITE 350

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           ++  +        NP+ +          +           L+     + +   +      
Sbjct: 351 VNNILAGITDDNGNPAPVTFFEGTDASDIRLATIDTTQEKLLGQ--KAIDVARLRSTTVN 408

Query: 394 INTNVTL-LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
           I    TL   Y +  +  +  N     ++    Q +   I     +  GV++ EEL+ +I
Sbjct: 409 IGGQSTLFESYYQGIVAQVGANVDHHSNMLENQQAIGQQIDALRQSVSGVSVDEELTRVI 468

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  Y  S ++I   D+ML  L+  ++
Sbjct: 469 QFQYGYQASARMIAIQDEMLDYLINRIR 496


>gi|308050018|ref|YP_003913584.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM
           9799]
 gi|307632208|gb|ADN76510.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM
           9799]
          Length = 457

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/481 (15%), Positives = 158/481 (32%), Gaps = 33/481 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRS 57
            +     +  + A    A+   NI NA    Y R+  + +        +   V V   R 
Sbjct: 2   NMLGNGLSGLHAAQMHLATTSNNIANATTPGYSRQQLLVSARPGGFMGAGSGVQVDGVRR 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                    +   S+  G      S+    E +        S +  +  L  +L S  ++
Sbjct: 62  VADEYLTAQIWRASTQAGFSTTKASYLGKTEEVFG--SKGASISMGLDSLFAALNSSVES 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            ++    ++V++ A+ +   F+T  + ++      +++I+  ++ +   L  +  +N  I
Sbjct: 120 PNDIATRQSVMNEAKSLASRFSTINQSLESQLKQVEEQIKGSVTEVNTRLENIARINKEI 179

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           +   ++       LD RD  + ++SE++ I T    +  + +    G  L          
Sbjct: 180 QRNMSNGDVPPQLLDARDQAVAELSEMVDIRTTENADGTINITLPKGQPLVLGTSAASFE 239

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +       S  + I        +      GK+ AL   RD      ++ +DE+A  L
Sbjct: 240 TFPDPANPQMSSLSLTIGNTTYEIQEN---VGGKMGALFDYRDGSWQQSRDFIDELAMQL 296

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+       +    P           +      +++              L  G   
Sbjct: 297 ADGFNSILANGTDLNGNPPALDLFTYDPDNPAGTLKVTDGFTAE--------MLAFGQDG 348

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +     N+K+L  + D    +               + ++ TL E     +G L      
Sbjct: 349 TPGDNSNLKDLLAFADTKLTF-------------TSLGSDATLNEAYAMYLGELGIQSRQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +                VNL EE   +I  +Q+Y  + K+I   D++ QT++ 
Sbjct: 396 AQLESDSADGELLRALNERDGVSAVNLDEEGINIIVYQQAYQANAKVISTADQLFQTMMT 455

Query: 478 G 478
            
Sbjct: 456 M 456


>gi|222053739|ref|YP_002536101.1| flagellar hook-associated protein FlgK [Geobacter sp. FRC-32]
 gi|221563028|gb|ACM19000.1| flagellar hook-associated protein FlgK [Geobacter sp. FRC-32]
          Length = 479

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 85/503 (16%), Positives = 181/503 (35%), Gaps = 47/503 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +  +F+ A        Q       NI N +   Y R+  +                 V
Sbjct: 1   MGINDIFSIATRGIAAQRQAIEVTSENIANVNTPGYSRQRVIMESGPANIASGFPIGGGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            VV  +    N+    L   +S   Q    Q+     E +  ++   +     +     S
Sbjct: 61  EVVAVQRSYDNLLQTQLVNGNSTYQQNLAKQTALQQVEPLF-NEVSTDGLGKAMESFFGS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  S N       + +I  ++ +V  F+     +  +   AD+++    +++   L  +
Sbjct: 120 WQDLSLNPQGAPERQALIARSQILVDTFHQMNTNLNAVITSADQDLVSITADVSDKLGNI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY-TSDGTTLFE 229
            ++N  I        + ++  DQRD+L+Q+++  +GI+T  ++N  + V  T  G TL  
Sbjct: 180 ALLNQQIMTTQGMGGNVNEMKDQRDLLVQELAGKVGITTSEQSNGTLTVSLTLGGQTLVS 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK------------GKIKALLQ 277
                  +   +  T       +   G    +N  +                G+I   LQ
Sbjct: 240 GNQYSTVYTSPDGGTPQRNDIYVTPLGNPPPANTPATDTDVTATIGGLNNGYGEIGGTLQ 299

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +RD +VP +  +LDE+A  +I S + +     +     G+    G    D          
Sbjct: 300 VRDQIVPGYLAKLDELASKIITSVNTQHTAGADLAGGAGVAFFTGTSSAD---------- 349

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I V+    S+P+ +    +       N                    +     +A    N
Sbjct: 350 IAVSGTITSDPTRIAAAANPFVGPGDNRN-------------ALLIADIKNSSLAFSTGN 396

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            T+ ++    +  +  +   + +   + +     ++    +  GV+L EEL+ L+K +++
Sbjct: 397 STVADFFNAFVSNVGIDVQKAKNTAAQGEAFLKQLNTLRESNAGVSLDEELTNLLKYQRA 456

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  + +L+    +M+ T+L  V+
Sbjct: 457 FEGAARLVTTGSEMMDTILAMVR 479


>gi|154687656|ref|YP_001422817.1| flagellar hook-associated protein FlgK [Bacillus amyloliquefaciens
           FZB42]
 gi|154353507|gb|ABS75586.1| FlgK [Bacillus amyloliquefaciens FZB42]
          Length = 505

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/515 (14%), Positives = 172/515 (33%), Gaps = 54/515 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+   +      +++  N+ NA+ + Y R+      +               
Sbjct: 3   STFMGLETARRALSAQQTALSTVSNNVANANTEGYTRQRVTLQSTSPYPAVSKNSDLTAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +      +  D      ++ +G      +  +  E +   +  +N     +
Sbjct: 63  QIGTGVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVM-KELDDNGLNGSL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S   ++L+  + N         + +  + + ++FN  +  +  I+ D  K ++     + 
Sbjct: 122 SSFWNALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L++L  +N+ I     S    +D  DQRD L+ ++S +  I      +    + T++G
Sbjct: 182 SILNQLNDLNNQIAAVEPSGMLPNDLYDQRDRLIDQLSSMANIKVSYNKSGGHALATAEG 241

Query: 225 TTLFETVP------------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E +                   +M             +     + N  +   KG +
Sbjct: 242 TVNVELLNGNNNSLGTLLDGNTKTVSEMKINYDKDSGLVSSVSVGSSTVNADAFTGKGSL 301

Query: 273 KALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
             L++            + P     LD MA     +F+             G    D   
Sbjct: 302 LGLIESYGYMSNGEEKGLYPEMLTALDNMALSFADAFNAVHEKGKTYTGEQGAAFFDFS- 360

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            ++    +G +  I V+ +  ++   +    +  K    N  NLA   +           
Sbjct: 361 GVEAVPAKGAAAKIKVSDKILASTDNIAASLNGEKSDGTNATNLAAVQN----------- 409

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +       T+ ++  + IG L  N   + +L   S+       E   +   V+L
Sbjct: 410 ----SKLTINGETTTINDFYESLIGKLGVNSQKAANLMNNSESNTLSADERRQSVSAVSL 465

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            EE++ +I+ + +YN + ++I   D++   ++ G+
Sbjct: 466 DEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGM 500


>gi|328555246|gb|AEB25738.1| flagellar hook-associated protein FlgK [Bacillus amyloliquefaciens
           TA208]
 gi|328913607|gb|AEB65203.1| flagellar hook-filament junction [Bacillus amyloliquefaciens LL3]
          Length = 505

 Score =  216 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/515 (14%), Positives = 169/515 (32%), Gaps = 54/515 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+   +      +++  N+ NA+ + Y R+      +               
Sbjct: 3   STFMGLETARRALSAQQTALSTVSNNVANANTEGYTRQRVTLQSTSPYPAVSKNSDLTAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +      +  D      ++ +G      +  +  E +   +  +N     +
Sbjct: 63  QIGTGVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVM-KELDDNGLNGSL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S   ++L+  + N         + +  + + ++FN  +  +  I+ D  K ++     + 
Sbjct: 122 SSFWNALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L++L  +N  I     S    +D  DQRD L+ ++S +  I      +    + T++G
Sbjct: 182 SILNQLNDLNTQIAAVEPSGMLPNDLYDQRDRLIDQLSSMANIKVSYNKSGGHSLATAEG 241

Query: 225 TTLFETVP------------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E +                   +M             +       N  +   KG +
Sbjct: 242 TVNVELLNGNNNSLGTLLDGNTKTVSEMKINYDKDSGLVSSVSIGSSEVNADAFTGKGSL 301

Query: 273 KALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
             L++            + P     LD MA     +F+             G    D   
Sbjct: 302 LGLIESYGYMSNGEEKGLYPEMLTALDNMALSFADAFNAVHEKGKTYTGEQGAAFFDFSG 361

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D      +G +  I V+ +  ++   +    +  K    N  NLA   +           
Sbjct: 362 DE-AVPAKGAAAKIKVSDKILASTDNIAASLNGEKSDGTNATNLAAVQN----------- 409

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +       T+ ++  + IG L  N   + +L   S+       +   +   V+L
Sbjct: 410 ----SKLTINGETTTINDFYESLIGKLGVNSQKAANLMNNSESNTLSADQRRQSVSAVSL 465

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            EE++ +I+ + +YN + ++I   D++   ++ G+
Sbjct: 466 DEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGM 500


>gi|254511786|ref|ZP_05123853.1| flagellar hook-associated protein FlgK [Rhodobacteraceae bacterium
           KLH11]
 gi|221535497|gb|EEE38485.1| flagellar hook-associated protein FlgK [Rhodobacteraceae bacterium
           KLH11]
          Length = 483

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/490 (18%), Positives = 183/490 (37%), Gaps = 19/490 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRS 57
           M++    N A    N AS+  A +  NI NA    Y RR    T S      V VV    
Sbjct: 1   MNMSTALNNALGGLNAASRGAAVVSGNIANALTPGYARRTLELTTSPISGNGVRVVGITR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               +      A  + +   + + +F A  E +        S    +++   SL + +  
Sbjct: 61  HQDPVLIANRRATDADLAAAKTVSAFHAGFEQLVGTADDATSIAARLAEFESSLITAASL 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                           +    N ++  ++++R+DAD+ I  +I  L + L ++  +N  I
Sbjct: 121 PDSAQRLDQAARAGAGLSATLNHASEGLRQMRSDADRTIGKQIDTLNQTLKDIEKLNARI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              + S  D    LDQR +L+ +++E++ ++ + R N+ + +Y+  G  L E    + +F
Sbjct: 181 PAVSNSGGDIGALLDQRQILIDQVNELVPVNVVARANDQVSLYSDGGLILLEGPAAEFSF 240

Query: 238 EKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                           + G+ V+          + +  G + +   IRD +    Q  LD
Sbjct: 241 STTGDTMPHMTIGNGLLSGLEVNGQPVRIDGDFAQIRGGALMSQFMIRDELAVEAQADLD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---KLCQGISETICVNPQYRSNP 348
            +AR LI  F             PGLF  +G +        L   I+    V+P    + 
Sbjct: 301 AVARDLIERFEAPGLDPTTLATDPGLFTDEGNRFDPALQTGLASRITLNATVDPDTGGDS 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             LR            +    G   L++ +  +  +      ++    ++   E +   +
Sbjct: 361 WRLR------AGLGATLPGAPGDASLLHAFGAALTEARPSPGLSFGTGSLRAAEISEALL 414

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                N   +      +      + +  +   GV+   EL  L+++EQ+Y  + +++   
Sbjct: 415 SRAGANAHSADQRRSFAANAQLEMEKIVAEQ-GVDSDVELQRLMQIEQAYAANARIVAVV 473

Query: 469 DKMLQTLLEG 478
           D+++ TLL  
Sbjct: 474 DELMDTLLRL 483


>gi|118581855|ref|YP_903105.1| flagellar hook-associated protein FlgK [Pelobacter propionicus DSM
           2379]
 gi|118504565|gb|ABL01048.1| flagellar hook-associated protein FlgK [Pelobacter propionicus DSM
           2379]
          Length = 456

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/493 (17%), Positives = 173/493 (35%), Gaps = 51/493 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L +     +               NI N + + Y R+  +   S             V
Sbjct: 1   MGLSSAMEIGKRGLIIYQVATEVTGENIANVNTEGYSRQRVILETSPPTTHNGFPLGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + T      ++  + L   +SA G   L        E    ++  N+     I+    +
Sbjct: 61  KISTVERYYDSLLQQQLVTANSASGYDTLCSEVLQQIEPSF-NELTNDGIGSAITNYFQA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            E  S N S     + ++  A+ +V++FN+ +  +       D  +    +++   L+ +
Sbjct: 120 WEDLSTNASGTTERQVLLSQAQVLVESFNSVSTTLTDTIKAQDSSLTALTADINNKLTNI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT---- 226
             +N  IK       +A++  DQRD+L+++++E +GI      +    VY  D T     
Sbjct: 180 ATLNAQIKQTELVSGNANEMRDQRDLLVKQLAEQMGIKYTENADGTTDVYVQDSTPATYY 239

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L +            S   T   + +      V S   +A   G + A LQ+RD ++P +
Sbjct: 240 LVQGNQAGSLTVGGTSPARTVTIDSVSGATKTVDSTLYTAQDGGTLWATLQLRDVIIPDY 299

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            +QLD++A  +I   + +     +    PG     G       +               +
Sbjct: 300 IDQLDDLASTIITDVNTQHQAGFDINGDPGADFFSGTSAATFSVSI-------------T 346

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +P+ +   GS +     N                        + +   +           
Sbjct: 347 DPNNIAAAGSSAAAPGGNG-----------------------NALLIADLQSGFSISYNT 383

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +  +   +  +  + +     ++    +  GV+L EEL+ L+  ++SY  S KLI 
Sbjct: 384 LVSQIGLDVDQAETVVEQDEAYLKQLNTLRDSKSGVSLDEELTNLVMYQRSYQASAKLIT 443

Query: 467 FTDKMLQTLLEGV 479
              +M+ TLL  V
Sbjct: 444 TVTEMMDTLLAMV 456


>gi|321313088|ref|YP_004205375.1| flagellar hook-associated protein FlgK [Bacillus subtilis BSn5]
 gi|320019362|gb|ADV94348.1| flagellar hook-associated protein FlgK [Bacillus subtilis BSn5]
          Length = 507

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +      ++   N+ NA+   Y R+                      
Sbjct: 3   STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D      +++ G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  S N +E+     V    + V + FN  +  +  ++++   E+   + ++ 
Sbjct: 122 NSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS+L  +N  I          +   DQRD+L+ K+S ++ I      +    + +++G
Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEG 241

Query: 225 TTLFETVPRDI------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E + ++                ++ +           I     +    S   KG +
Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQVESFSSKGSL 301

Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
              ++             V P   + LD MA     +F+E            G    D  
Sbjct: 302 LGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFT 361

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                       +    +    S  + +    + +     N   LA              
Sbjct: 362 GGETEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLA-------------- 407

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
            N +   +       ++L+Y    IG L     +++ L   ++   N    +      V+
Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVS 466

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +I+ + +YN + +++   D++L  ++ G+
Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGM 502


>gi|254473300|ref|ZP_05086697.1| flagellar hook-associated protein FlgK [Pseudovibrio sp. JE062]
 gi|211957416|gb|EEA92619.1| flagellar hook-associated protein FlgK [Pseudovibrio sp. JE062]
          Length = 479

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 132/485 (27%), Positives = 212/485 (43%), Gaps = 11/485 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQR 56
           MSL +    AQ+     S + A   RN+ N +N  Y R++ +     + +   V V    
Sbjct: 1   MSLTSAMLTAQSSIAARSAEMAIASRNVANVNNPGYSRQEAVVQNIVSDTGSVVYVSHAS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   K      SA        +                S    I  L +++ SY  
Sbjct: 61  RMVNQAAFKATLKTGSAAIASGSYANMLDQLNPSGQVPF-GTSIASGIGTLGEAIVSYGN 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + S  +LG++V+++A  +V +   S+  +++ R +AD  +   + N+   LS+L  VN  
Sbjct: 120 DPSNQVLGQSVVNSATALVDDIKQSSESLKETRLEADAAMGRAVDNINNILSDLEEVNGK 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I   + +  D +  +DQRD +L+ +SE IGI+ + + NN + VYT  G TLFE V R+++
Sbjct: 180 IVTGSNAGQDVNSLMDQRDEMLRVLSEEIGITVLDQENNGVAVYTDSGVTLFEKVAREVS 239

Query: 237 FEKMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           FE   S         I +DG+ V        V  G I    +IRD  +   Q QLDE A 
Sbjct: 240 FETSLSLGSGEVGKNILVDGIAVAGPGATMPVSGGAIAGYAKIRDDTLVTMQTQLDEAAE 299

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L+ +F E  P                       L   +     VNP    +   LRDGG
Sbjct: 300 ALVDAFQETQPGGT-----APQDGLFTFAAGTGDLIGRLKVHDAVNPAAGGDVKLLRDGG 354

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                +  N  + AGY DL+  Y  + N+   FDP +G+N   TL ++A N++ W    R
Sbjct: 355 INGAAYKHNTGDNAGYSDLLKSYEAALNQERTFDPTSGVNPTSTLKDFASNTVSWFSAER 414

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             + +        F+  ++  SN  GVN+  E+  L+ +E +Y+ S +L+   D+M Q L
Sbjct: 415 KIATETSTLDASAFSSNAQMLSNKTGVNIDTEMQRLLTIETAYSASARLMTAVDRMFQEL 474

Query: 476 LEGVK 480
           L  V+
Sbjct: 475 LSAVR 479


>gi|163742564|ref|ZP_02149950.1| flagellar hook-associated protein K [Phaeobacter gallaeciensis
           2.10]
 gi|161384149|gb|EDQ08532.1| flagellar hook-associated protein K [Phaeobacter gallaeciensis
           2.10]
          Length = 472

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 183/477 (38%), Gaps = 18/477 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRSENKNMFDKVL 67
                 A +  + +  N+ N     Y RR    T +      V V   +  N       +
Sbjct: 1   MTGLTAAGRSTSVVSENLSNVLTPGYSRRSLALTSAGDGFSGVKVGHVQRINDPALQSSV 60

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
            + +S +G   +  +F      +        S T  ++     L               +
Sbjct: 61  RSANSEVGVAEVKSAFFGRMTELVGSADDPYSITQRLTDFDSGLIEVISRPDSGPRLNDL 120

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
              AEE+V++   +A  ++  R  AD+ I++++  + + L +L  +N  I    ++  D+
Sbjct: 121 AIQAEELVRSIADAAEGLRNQRTAADRAIDVQVDTVNQSLEKLQKLNAKIAISQSTGSDS 180

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV-- 245
              LDQRD+L+ ++++II +  + R+   + +++  G  L +    +++F+         
Sbjct: 181 ASLLDQRDLLIDEVNKIIPVKVVNRDRGQVALFSEGGAVLLDGQAAELSFDGKADTLPYM 240

Query: 246 ---TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  + + I+G+ V++  G  V  G + A  ++RD +    Q  LD MA+ LI  F 
Sbjct: 241 TLGNGLLSGLQINGIDVATGPGGPVRGGTLAAQFEVRDVLTVEAQEDLDAMAKDLIERFQ 300

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +       +   PG+F   G              I     +  Q ++    LRD      
Sbjct: 301 DPALDPTLTATDPGIFTDQGAFFDPANTVGIANRIELNDKIAMQGQAETWRLRD------ 354

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                    AG   L+  Y D+ +       V     N+     + N +    ++++ + 
Sbjct: 355 GLNAASPGNAGDATLLRGYADALDAKRTVSSVGLGTANLDASTLSANLLSRFAQSKNSAE 414

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                +   +  + +      GV+   EL  LI +E+ Y  + ++I   D++++TLL
Sbjct: 415 QNVAFAAATYTEMYQRELAQ-GVDSDAELQNLIVIEKVYQANARMISVVDELMETLL 470


>gi|261409644|ref|YP_003245885.1| flagellar hook-associated protein FlgK [Paenibacillus sp. Y412MC10]
 gi|261286107|gb|ACX68078.1| flagellar hook-associated protein FlgK [Paenibacillus sp. Y412MC10]
          Length = 520

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 164/518 (31%), Gaps = 45/518 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+           +   NI NA    Y R+                      
Sbjct: 3   STFHGIETAKRSLFAQMAGMNTTGHNIANASTPGYSRQVVGLIASRPLAMPGMYNQISPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   +       D+     + ++G   +     +  E +  ++   +  T  I
Sbjct: 63  QLGTGVEVNYIKRVRDQFLDQQYWNANRSLGDWEVQAGTLSKLETIF-NEPSESGLTTVI 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                +   +SK+       K V +NA  + + FN +++++  ++AD  + I +   ++ 
Sbjct: 122 DNFWKAWSEFSKDPENVTSRKIVRENALAMAEAFNETSKKITDMQADLTQGIAVNADHIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV----- 219
              +++  +N  I      + +A+D  DQRD+++ ++S +  ++ +       V      
Sbjct: 182 TLTTQVAQLNYEINRIEGFRDNANDLRDQRDLIIDELSRMANVTVVEEETGYRVTVGGLE 241

Query: 220 ----------------YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
                               G TL       I   +        +      + +      
Sbjct: 242 LVAGDAAVPVTPAQLETAYAGNTLNSGELFGIIKSRDGIVKDYLDQLNELANTIANGDVS 301

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
            +      +     +           L     V +   +    +     +          
Sbjct: 302 ITIPAGSVLPEGTVLNGVTYSGTTRTLTADTTVTVKGLNGLHKLGYLFTSPAQAAGDFFS 361

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                 +    + +  VN     +P+ +     V      + + + G   L         
Sbjct: 362 SKDGGPIT---AASFSVNNAIVQDPNKIASSLRVVAGTNGD-EVVKGNNTLALLMSQLRE 417

Query: 384 KNFIFDPVAGINT--NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
           + F F+ +A  N     T+ +Y R  +G L     ++      +Q++ + +     +  G
Sbjct: 418 RPFTFNAIASNNGITTGTVDDYYRAVMGQLGVQSREALRQQDNNQLLVDQVDSRRQSVSG 477

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           V+L EE+S LIK++ SY  +++ +   D+ L  ++  +
Sbjct: 478 VSLDEEMSNLIKLQHSYGAASRFMTTVDQNLDKIINSM 515


>gi|296330251|ref|ZP_06872732.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676144|ref|YP_003867816.1| flagellar hook-filament junction [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152519|gb|EFG93387.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414388|gb|ADM39507.1| flagellar hook-filament junction [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 507

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +      ++   N+ NA+   Y R+                      
Sbjct: 3   STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D      +++ G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGIL-NETDDSGLNSVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  S N +ED     V    + V + FN  +  +  ++++   E+   + ++ 
Sbjct: 122 NSFWNSLQELSNNTNEDSARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS+L  +N  I          +   DQRD+L+ K+S ++ I      +    + +++G
Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALSSAEG 241

Query: 225 TTLFETVPRDIN------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E + ++                ++ +           I     +    S   KG +
Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYAVSELAANYDNETGLVSSISIGDTAVQVESFSSKGSL 301

Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
              ++             + P   + LD MA     +F+E            G    D  
Sbjct: 302 LGFVESYGYITADGEEKGIYPEMLSDLDNMALEFAKAFNEVHRNGLTKSGDQGGDFFDFT 361

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                       +    +    S  + +    + +     N   LA              
Sbjct: 362 GGDTEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLA-------------- 407

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
            N +   +       ++L+Y    IG L     +++ L   ++   N    +      V+
Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIKAQEANRLASNTETQLNDADINRQQMSAVS 466

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +I+ + +YN + +++   D++L  ++ G+
Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDEILDKVINGM 502


>gi|114330367|ref|YP_746589.1| flagellar hook-associated protein FlgK [Nitrosomonas eutropha C91]
 gi|114307381|gb|ABI58624.1| flagellar hook-associated protein FlgK [Nitrosomonas eutropha C91]
          Length = 467

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/485 (12%), Positives = 164/485 (33%), Gaps = 34/485 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N   +    A     +   NI NA    Y R+  + + +             V V 
Sbjct: 3   NSIMNVGVSGLQAAQTALLTTSHNISNATTPGYNRQQAIQSTNTPLPHSNGFIGRGVQVS 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +                   Q     +     + + AD       T  +    ++++ 
Sbjct: 63  TVQRIYNQYLVSQSLQAQGQSSQLDSHYNEIKQIDNLLADTTS--GLTPALHNFFNAVQD 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N +     + ++ NAE +V  F +  + + ++R   + +I   ++ +     ++  +
Sbjct: 121 VASNPTSIPSRQAMLSNAEALVSRFQSMDQRLSEMREGVNSQIASSVNEINSLAQQVVRL 180

Query: 174 NDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           N  I+     A+   A+D  DQRD L++ +S++  +  + ++N    V+  +G +L    
Sbjct: 181 NTNIQAVEGSANSQPANDLYDQRDALIRDLSKLANVDVVRQSNGHYNVFIGNGQSLVVGT 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S         + + G          +  G +  LL  R   +   Q   +
Sbjct: 241 SAMALKAVPSSSDPQRLVVAMDV-GDKEILLPEHQLQGGSLGGLLAFRSETLDAIQTDFN 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A+ L  +F+++  +  + +   G    +                             +
Sbjct: 300 QLAKGLADTFNDRHTLGLDLQGTVGKNFFEVTDSNHVARS-------------------I 340

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               S   +    + +   + D +    ++     +           +      + +  +
Sbjct: 341 EVAISDPAEIAAALNDGGSFDDRVADNRNALQLAKLQTTNTLQGGTASYQSAYASLVSQV 400

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +        + +     ++  +  GVNL+EE + L++ ++ +  S+K+I  ++ +
Sbjct: 401 GNKTRELEVTSQAQESLLAQTDQAIQSLSGVNLEEEAANLLRYQRMFQASSKVIEISNSL 460

Query: 472 LQTLL 476
             +LL
Sbjct: 461 FDSLL 465


>gi|16080594|ref|NP_391421.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311492|ref|ZP_03593339.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315819|ref|ZP_03597624.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320734|ref|ZP_03602028.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325019|ref|ZP_03606313.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|2828498|sp|P39810|FLGK_BACSU RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|1762338|gb|AAC44946.1| flagellar-hook associated protein 1 (HAP1) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636067|emb|CAB15558.1| flagellar hook-filament junction [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 507

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +      ++   N+ NA+   Y R+                      
Sbjct: 3   STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D      +++ G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  S N +E+     V    + V + FN  +  +  ++++   E+   + ++ 
Sbjct: 122 NSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS+L  +N  I          +   DQRD+L+ K+S ++ I      +    + +++G
Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEG 241

Query: 225 TTLFETVPRDI------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E + ++                ++ +           I     +    S   KG +
Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQAESFSSKGSL 301

Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
              ++             V P   + LD MA     +F+E            G    D  
Sbjct: 302 LGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFT 361

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                       +    +    S  + +    + +     N   LA              
Sbjct: 362 GGETEPAKGAAGKIKVADSIIDSKGANIAFSLTGAANDNANATKLA-------------- 407

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
            N +   +       ++L+Y    IG L     +++ L   ++   N    +      V+
Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVS 466

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +I+ + +YN + +++   D++L  ++ G+
Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGM 502


>gi|326202857|ref|ZP_08192724.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens
           DSM 2782]
 gi|325986934|gb|EGD47763.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens
           DSM 2782]
          Length = 544

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/537 (14%), Positives = 176/537 (32%), Gaps = 65/537 (12%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVT 51
               N A +    A +   ++  N+ NA    Y R+ T+ + S                 
Sbjct: 5   FFGLNIALSGLYTAQRNLDTVGHNLSNATTPGYSRQQTIQSASNPLAVLDGTGMVGTGSQ 64

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
               +    +  D    + + A G+           ++   ++   +     +    DSL
Sbjct: 65  ATGVQRIRDSYLDFKYWSENVASGEWSKKAELMGEIQVTF-NEPSKSGFVKIMEGFFDSL 123

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SK+ S       V+  A  + + FN +A   ++ + D + +++ ++  +    S++ 
Sbjct: 124 QELSKDPSSGAARALVVQKATTLTKYFNNTATHFEQFQNDLNDQVKTDVDQINIIASQIQ 183

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVYTSD 223
           ++N  I     +   A+D  D R  L+ ++S++  I              ++     T  
Sbjct: 184 LLNKQIYNYELTSGTANDLRDSRTKLVDQLSKLANIQAKEISYGKLPNGEDDVHFQITLG 243

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-- 281
           G TL +            +  + +E      D      N  + +  G+++ LL +RD   
Sbjct: 244 GKTLVDHFSSTKLNVVQRTTKLNAEDIGNLYDIKWEDGNSVN-ISGGELRGLLDVRDGKD 302

Query: 282 ---------VVPIFQNQLDEMARVLIGSFSEKDP---IAGNSENVPGLFIADGIKDLDNK 329
                     VP +Q +L+E  +    +F+E            +V  +       DL + 
Sbjct: 303 GIDGTPIYKGVPYYQKKLNEFVQTFAIAFNEGYTKTNSGYAHTDVGHIDGYGYDPDLTDA 362

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD--------- 380
                           + P    D  +       +   +                     
Sbjct: 363 NTAPTGIRFFTMLGVGNTPISSADLIAGVTVGKSDPDYINQVAQQYKQITAKNFSVSSDI 422

Query: 381 --------------SFNKNFIFDPVAGINTNVTL------LEYARNSIGWLEKNRSDSHD 420
                               +   + GI TN +L       ++ ++ +  +  +   +  
Sbjct: 423 IDNPNNIAASETTGQNGNTGVLKKLMGIRTNQSLFKEGAPEDFMKSLVAGMGIDAQQAET 482

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             +    +   +     +  GVNL EE++ +IK +QSYN + ++I+   ++  TL+ 
Sbjct: 483 FAITQDTLVRQVDNRRMSVSGVNLNEEMTNMIKFQQSYNAAARMIVTMGQIYDTLIN 539


>gi|291486094|dbj|BAI87169.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp.
           natto BEST195]
          Length = 507

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 167/516 (32%), Gaps = 54/516 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +      ++   N+ NA+   Y R+                      
Sbjct: 3   STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D      +++ G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +SL+  S N +E+     V    + V + FN  +  +  ++++   E+   + ++ 
Sbjct: 122 NSFWNSLQELSNNTNEESARSVVARKGQAVAETFNYISESLTNVQSNLKAELNTTVLDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS+L  +N  I          +   DQRD+L+ K+S ++ I      +    + +++G
Sbjct: 182 SLLSQLNSLNKQIAQVEPVGLLPNGLYDQRDLLIDKLSSMVDIKVSYNKSGGNALASAEG 241

Query: 225 TTLFETVPRDI------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E + ++                ++ +           I     +    S   KG +
Sbjct: 242 TVSIEILDKNKQSLGTVLDGKNYEVSELAANYDNETGLVSSISIGDTAVQAESFSSKGSL 301

Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
              ++             V P   + LD MA     +F+E            G    D  
Sbjct: 302 LGFIESYGYITADGQEKGVYPEMLSDLDNMALEFAKAFNEVHRNGVTKSGEQGGDFFDFT 361

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                       +    +    S  + +    + +     N   LA              
Sbjct: 362 GGETEPAKGAAGKIKVADSILDSKGANIAFSLTGAANDNANATKLA-------------- 407

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
            N +   +       ++L+Y    IG L     +++ L   ++   N    +      V+
Sbjct: 408 -NVLTGKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQQMSAVS 466

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +I+ + +YN + +++   D++L  ++ G+
Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGM 502


>gi|212637791|ref|YP_002314316.1| flagellar hook-associated protein [Shewanella piezotolerans WP3]
 gi|212559275|gb|ACJ31729.1| Flagellar hook-associated protein, putative [Shewanella
           piezotolerans WP3]
          Length = 457

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/486 (17%), Positives = 165/486 (33%), Gaps = 36/486 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+    N   +  N +     +   N+ NA    Y R+  M +     V        V 
Sbjct: 1   MSM---LNIGMSGLNASMAALNATSNNVANAMVPGYSRQQVMMSSVGNGVYGSGAGVMVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +S +G  ++  S+    E +   +   NS +  +  L  SL S
Sbjct: 58  GVRRISDQYEVAQLWNTTSNLGFAKVQSSYFGQVEQVFGSE--GNSISAGLDLLFASLNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +E    + V++ A  + Q FN+ +  V       + +I      +   L  +   
Sbjct: 116 AMEQPNEIAYRQGVLNEARAISQRFNSISEGVSSQITQVEGQIGASAKEINAQLDSIAKF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+   A+ +     LD RD  +  +SEI+ +  +  +N  + +  + G  L      
Sbjct: 176 NAEIQAANANGNVPLALLDARDAAIDDLSEIVDVKVVEESNGLVNISLAQGQPLLAGTTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +          I         ++      G + AL+  RD+ +      +DE+
Sbjct: 236 SKIQVSPDPANPQFSQISIQFGQSNFPLDE---KAGGSLGALIDYRDNSLVDSMAFIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  +   F+       +    P           +      I+                  
Sbjct: 293 AMTMADEFNAVLAGGTDLNGNPPTQDLFSYDPSNPAGSMKITA----------------- 335

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G  +    +      G    +    +  N +F F+    +  + T+ +   + +G L  
Sbjct: 336 -GFNADMLAFGKDGTPGDNSNLKDLVELANASFTFNS---LGVDTTMGDAFASKVGELGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      +  +       +++T GVN+ EE + LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAQMAEDTAVKLQMEAQSQWASTSGVNMDEEGTNLIIYQQSYQANAKVISTADQLFQ 451

Query: 474 TLLEGV 479
           T+L  +
Sbjct: 452 TILNSI 457


>gi|308175273|ref|YP_003921978.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7]
 gi|307608137|emb|CBI44508.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7]
          Length = 505

 Score =  214 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/515 (14%), Positives = 168/515 (32%), Gaps = 54/515 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+   +      +++  N+ NA+   Y R+      +               
Sbjct: 3   STFMGLETARRALSAQQTALSTVSNNVANANTAGYTRQRVTLQSTSPYPAVSKNSDLTAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +      +  D      ++ +G      +  +  E +   +  +N     +
Sbjct: 63  QIGTGVKAGSVERVRDSFLDYQYRTENTKLGYYTARSNSLSQMEGVM-KELDDNGLNGSL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S   ++L+  + N         + +  + + ++FN  +  +  I+ D  K ++     + 
Sbjct: 122 SSFWNALQDLATNPENTGARSVLQEQGKSLAESFNYISTSLTNIQGDIKKNLDNTADQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L++L  +N  I     S    +D  DQRD L+ ++S +  I      +    + T++G
Sbjct: 182 SILNQLNDLNTQIAAVEPSGMLPNDLYDQRDRLIDQLSSMANIKVSYNKSGGHSLATAEG 241

Query: 225 TTLFETVP------------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E +                   +M             +       N  +   KG +
Sbjct: 242 TVNVELLNGNNNSLGTLLDGNTKTVSEMKINYDKDSGLVSSVSIGSSEVNADAFTGKGSL 301

Query: 273 KALLQIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
             L++            + P     LD MA     +F+             G    D   
Sbjct: 302 LGLIESYGYMSNGEEKGLYPEMLTALDNMALSFADAFNAVHEKGKTYTGEQGAAFFDFSG 361

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D      +G +  I V+ +  ++   +    +  K    N  NLA   +           
Sbjct: 362 DE-AVPAKGAAAKIKVSDKILASTDNIAASLNGEKSDGTNATNLAAVQN----------- 409

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +       T+ ++  + IG L  N   + +L   S+       +   +   V+L
Sbjct: 410 ----SKLTINGETTTINDFYESLIGKLGVNSQKAANLMNNSESNTLSADQRRQSVSAVSL 465

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            EE++ +I+ + +YN + ++I   D++   ++ G+
Sbjct: 466 DEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGM 500


>gi|77918753|ref|YP_356568.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544836|gb|ABA88398.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM
           2380]
          Length = 464

 Score =  214 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/491 (15%), Positives = 169/491 (34%), Gaps = 38/491 (7%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS L    N  +               NI N +   Y R+                    
Sbjct: 1   MSGLTDALNLGKTSLATHQTLLDVTGNNIANVNTDGYSRQSVDLGTVPALNFRGFQIGRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VT    +       ++ +   +S +G+Q    +  A  E +    + N   T  I +  D
Sbjct: 61  VTANNIQRAEDTFLNRQILDKNSGLGEQSAQTTPLAEMETIFNLGNDN--LTAKIDQFFD 118

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E  S      +   TV+     +  +F++ ++++  + +  D+ +  +++ + + L++
Sbjct: 119 GWEQLSVTPDGSVERDTVLQYGTLLADSFHSMSQDLADLSSQVDEALTSKLAEINQKLAQ 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +   N  I    ++  +A+   D RD LL+++S  +G  +   N+ ++ V    G  L  
Sbjct: 179 VADYNQRITTLESTGINANADRDGRDALLEELSFSLGTQSYENNDGNVSVQLPTGLPLIS 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                         T T+  + + ++    +    +    G+ K LL +RD  +P  Q+ 
Sbjct: 239 GNRAFSL-----EATATATGSELQLNLGTTTRPVDANGLGGEFKGLLNLRDQFIPQVQDN 293

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  L    +         +   G                       ++    ++P 
Sbjct: 294 LDRLAYTLSTEVNTLHAGGTGLDGSTGQDFF------------------SLSISGGADPW 335

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                G        N +  AG    +    ++     + +     +   +   +      
Sbjct: 336 SGAAAGIEVALTASN-QVAAGQSSAVGDNTNALLMTELKNAKTM-DGAHSFGTFYAKIAS 393

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    + +       +     +     + VGV+L+EE+  LI+ ++ +  S KL+   D
Sbjct: 394 DIGLESAQNQLSVTGLEDTMLQLENLRDSKVGVSLEEEMINLIQYQRGFEASAKLLTTVD 453

Query: 470 KMLQTLLEGVK 480
           +M+ T+L   +
Sbjct: 454 EMMDTVLSLKR 464


>gi|325288761|ref|YP_004264942.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964162|gb|ADY54941.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 493

 Score =  214 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/510 (13%), Positives = 159/510 (31%), Gaps = 55/510 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  A     +   +       +   NI NA  + Y R+      +               
Sbjct: 3   STFAGLELGKRALSAQQLALNAAGHNISNASTQGYTRQVANLATTIPDQLYLFGHTQSVG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V T      N  D+     ++        Q+     E +  ++   +S  + + K 
Sbjct: 63  TGVAVATIIRVRDNFIDRQYRWETARQQYWTERQNSLQQVEGIL-NEDSADSLHNDLDKF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +    S +         V + A  +    N  ++++  ++ D D ++ +++  +    
Sbjct: 122 WVAWSDLSTSSETLGAKAVVRERAIALTGTLNHISKQITDMQNDLDNKVNVQVGLINNIA 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---- 223
            ++  +N  IK    +    +D  D RD L+ ++S+I+ +  I   +             
Sbjct: 182 QQIKDLNMQIKSAEVAGDKPNDLYDVRDNLVDELSKIVSVRVIESTDPMFTDRQVGIYKV 241

Query: 224 -------GTTLFETVPRDIN------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                  G  L +                      T +  P    G             G
Sbjct: 242 QIGDEAAGQLLVDDSQVTELAWIDSVTNTTQDLDTTPDGIPDVEFGPGSGIKLQLGSQMG 301

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            +++L+  R + +   Q +LD +A  ++ + +        +                   
Sbjct: 302 SLQSLIDTRYTYLQNLQGKLDNLAAGIVTAVNSLHQDTDPATTDYFF------------- 348

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                       +  ++   L          +      +G  D+ +      +       
Sbjct: 349 ---------DPTKLTASDITLYSDIEDDAGRIITGTTGSGDGDVASSIAALAHGWSSAAT 399

Query: 391 VAGINTNVTLLEYAR-NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            A + +  +L +Y   N +     +   +  +      + N +S    +  GV++ EE++
Sbjct: 400 PAEMGSAASLGDYYNGNIVAVFGVDVQQAQRMTAVEDALINQLSNRRDSVSGVSIDEEMT 459

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            LIK + +Y+ + +++   D ML  ++ G+
Sbjct: 460 NLIKFQTAYSAAARMVTIMDDMLDKVVNGM 489


>gi|295697521|ref|YP_003590759.1| flagellar hook-associated protein FlgK [Bacillus tusciae DSM 2912]
 gi|295413123|gb|ADG07615.1| flagellar hook-associated protein FlgK [Bacillus tusciae DSM 2912]
          Length = 540

 Score =  214 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/534 (14%), Positives = 170/534 (31%), Gaps = 61/534 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
                  A            +   NI+NA+   Y R+    + S                
Sbjct: 4   TFFGLETAVRGLRGQQAAINTASHNIDNANTPGYTRQRVDLSASTPIEMPSLYKTATPGQ 63

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V V           D      +  +G+  + Q        +  ++  ++     ++
Sbjct: 64  IGTGVQVEQITRLRDQFLDDQYRHQNQYLGEWNVRQDALDKISAIL-NEPSDSGLATVMA 122

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
              ++      N  +      V      V Q  N +A+++  + AD  + ++ +++ +  
Sbjct: 123 NFWNAWGKLGPNSDDLAARMQVKQTGIAVAQTLNQTAKQLSDLDADLQRSLQAKVTQVNS 182

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
           +L+++  +N+ I          +D LD+RD L+ ++S++  +          +  T  G 
Sbjct: 183 YLNQIATLNNQIAEIRQVGDQPNDLLDRRDYLVDQLSQLADVQATESGGTYTL--TIGGQ 240

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPI-------------------FIDGVVVSSNQGSA 266
           T+ +            +         +                     +G +     G  
Sbjct: 241 TVLQNSTVTSLDPANLTVGGGELKGLLEARQDVASYRAQLDAFANGLANGKMTIKLPGDW 300

Query: 267 VPKGKIKALLQI-RDSVVPIFQN--QLDEMARVLIGSFSEKDPIAGNSENVP-------- 315
              G          D  +   +   Q D++   LI + ++   +A   +           
Sbjct: 301 TLVGSGGGAPTFPVDVTLADGRQFKQGDQVPADLITTLADGTQVATIPKGAAVTVNGLNG 360

Query: 316 --------GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV-K 366
                        D     D       + TI V+P   S+   +    + + +   +   
Sbjct: 361 LHRLGYSLNGPGGDFFVSTDPNGGPITAATIAVSPDIVSDVGNIASALTTAPQKGTDPLT 420

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVA--GINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            LAG   L     +  +    +  +      TN TL +Y +  IG L     ++      
Sbjct: 421 GLAGDGTLAIAINNIKDTKIDYTGLGVPTPLTNGTLDDYFQAVIGGLGVQSQEAERQVAN 480

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +V+   +     +  GV++ EE++ +I+ +Q+Y  S +++   D+ML  L+ G
Sbjct: 481 QEVLVQQLDGKRQSVAGVSIDEEMANMIRFQQAYGASARMVTAIDQMLDKLING 534


>gi|209963558|ref|YP_002296473.1| flagellar hook-associated protein 1 FlgK, putative [Rhodospirillum
           centenum SW]
 gi|209957024|gb|ACI97660.1| flagellar hook-associated protein 1 FlgK, putative [Rhodospirillum
           centenum SW]
          Length = 495

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 103/496 (20%), Positives = 200/496 (40%), Gaps = 19/496 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MS+      A        Q+ A + RN+ NA    Y R++              VTV   
Sbjct: 1   MSIGLALQTALTGLQAQQQKSAILSRNVANATTPGYTRKEVTLASLTVGGEGRGVTVQDV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R        +     SS    +       A+            S +  ++ L  +  +  
Sbjct: 61  RRNADAHLARETRTQSSDYAAKAARADALAVYTESIGQPQEERSLSSAVTALETAFLALE 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +     +  + V+D A  +    N +  +++++R  AD +I   ++++ + L +L  +N 
Sbjct: 121 ELPDNPVQQRAVVDAAVSLANRLNAADDKIKQVRQQADSDIAASVADVNQALVQLEKLNR 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +K +T S  D  +  DQRDVLL +I+  IGI    R+ N++VV T  G TL +   R +
Sbjct: 181 EVKMRTGSGQDTTELEDQRDVLLDRIAGQIGIQYFTRSPNELVVMTDGGVTLLDGSARML 240

Query: 236 NFEKMNSYTVTSES----NPIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQ 289
            F        T+E     + + ++G  ++   G  +P   G+I  L ++RDS++P  + Q
Sbjct: 241 EFTPTAVIGSTTEYPSMLSGLKVEGADIAPGSGYPLPLKSGRIAGLFEVRDSLMPQARRQ 300

Query: 290 LDEMARVLIGSFSEKDP----IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           +DE+A VL+  F   D        +   +         +             +       
Sbjct: 301 IDEIASVLVDRFQAADASITGTGLSDTGLFTDAGVRHYRAPPYSPASPGPAGLAGRIA-V 359

Query: 346 SNPSFLRDGGSVS---KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           ++   +  GG+ +              G    I  +   F +   FD  AG+    TL  
Sbjct: 360 NDLVRVEAGGNPALLRTGIHAATTGDVGDTAQIRSFLGVFQQTVSFDADAGLIPTGTLKG 419

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +A  ++G  +  R+ + +      V+   +  +  +  GVN++EE+  L+ +E+++  + 
Sbjct: 420 FASAAMGHQQMLRATAANDAKAQSVLLETVETARISKDGVNIEEEMQELLLIEKAFAAAG 479

Query: 463 KLIMFTDKMLQTLLEG 478
           +++    +ML TL+E 
Sbjct: 480 QVMQAASRMLDTLMEI 495


>gi|262273522|ref|ZP_06051336.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP
           101886]
 gi|262222500|gb|EEY73811.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP
           101886]
          Length = 464

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 156/480 (32%), Gaps = 25/480 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
            +FN   +  N AS   +   +NI  +    Y R+          V V +    +     
Sbjct: 2   NLFNIGLSGLNAASAGLSVTGQNINQSLVPGYSRQRISFGSQDGGVQVSSVERMSDTFTH 61

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             +    S  G  +    + +  E +      N S    + +   +L   S    +    
Sbjct: 62  LQIQRQRSGFGYHQATTQYLSQAEALL--TSDNTSLNVGLDRFYAALNEASAQPQDIAYR 119

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           +T+I  +E +V  FN  +++++  R   D ++E  ++     ++ L  +N +++    S+
Sbjct: 120 QTIISQSEAMVDRFNNLSQQLESQRKQVDGQLEASVNKANTLMANLASLNRSLREANGSE 179

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
            +    LD RD  L ++S ++ I+T   ++  + V    G  L          +  +   
Sbjct: 180 AEKASLLDARDATLTELSSMMDINTTYHSDGSVSVSLDQGQPLVNGASASQLMKNSD--- 236

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                    +     S+    +   G I  +L  RD  +   + +LD MA      F+ +
Sbjct: 237 ------GGLVLKRGESTFTLGSSAGGTIGGMLNYRDGHLQSLERELDVMAYSFATQFNAQ 290

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                +     G  +              I           S+P  L   G+ +     N
Sbjct: 291 HTQGVDLNGKQGQPLF--------GGVDQIEGAAKNLTLLVSDPKALAFAGNGTVDEPGN 342

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGIN------TNVTLLEYARNSIGWLEKNRSDS 418
             NL     L N              +A            TL        G      S S
Sbjct: 343 SDNLEALIGLKNAPITLDKAKLSETDLAQYGDTIDKVNGKTLFTAYTGLCGDWAIKTSQS 402

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 ++    H   +  +  GVNL EE   L++  Q Y  + K+I    ++L   +  
Sbjct: 403 KTDMASAESQVKHAENARDSVSGVNLDEEAVSLMQFTQMYQANAKVISTAQQLLDITMGM 462


>gi|90422625|ref|YP_530995.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           BisB18]
 gi|90104639|gb|ABD86676.1| Flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
          Length = 490

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 151/489 (30%), Positives = 252/489 (51%), Gaps = 10/489 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           M+L    N A++    A  Q A++ RNI  A    Y R++ +        V V   +   
Sbjct: 1   MTLTVALNSARSSLMAAGAQAAAVSRNIAGAKQDGYSRKNVLLATMPGSGVFVEGIQRAA 60

Query: 60  KN-MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
              +F+ VL A S++  Q  L    + +      D   + SP   ++KLR +L+  +   
Sbjct: 61  SAGLFNNVLKAASTSAMQDTLYNGLQKIAAATIDDPELDQSPAAQLAKLRTALQQSATAP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               L +  +  A+ V  + N + + VQ +R DAD E+E  ++ + + L++   VN +I 
Sbjct: 121 DNVTLAQAAVTAAKGVAASLNDATKTVQGVRLDADAELETSVATINQLLAQFETVNTSIV 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +  D  D+LD RD +L K+S+ +GI+   R NNDMV+YT  G T+FE   R ++F+
Sbjct: 181 KGTITGADTTDYLDLRDSILSKLSQEVGITVSTRANNDMVIYTDSGVTMFEKTARSVSFD 240

Query: 239 KMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           +   ++ T+  N ++IDGV V  ++    V  GK+  L  +RD     +QNQLDE+AR L
Sbjct: 241 QTYGFSPTTTGNAVYIDGVPVIGASAVMPVQSGKLAGLAALRDDTTVSYQNQLDEIARGL 300

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFL 351
           + +F+E+D    +  +VPGLF   G   +             I+ +  V+     +P+ L
Sbjct: 301 VEAFAERDQSGASLPDVPGLFTYPGAPAIPGSGVIAVGLAGTITVSASVDQSVGGDPTRL 360

Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           RDGG S +  + +N    AGY   +    D   ++  FDP A    N  L+++A +S+ W
Sbjct: 361 RDGGISGNPAYTYNTTGHAGYFARLQQMADGLTQSRAFDPAALAKPNTGLIDFAGSSVSW 420

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           LE  R  + D    SQ +    +++ SN  GVN+ +E++F+++VE++Y+ S+KLI   D+
Sbjct: 421 LESQRKGASDESTYSQTLLERSADALSNVNGVNMDDEMTFMLQVERTYSASSKLISAVDQ 480

Query: 471 MLQTLLEGV 479
           ML+ LL  V
Sbjct: 481 MLKDLLAAV 489


>gi|189426324|ref|YP_001953501.1| flagellar hook-associated protein FlgK [Geobacter lovleyi SZ]
 gi|189422583|gb|ACD96981.1| flagellar hook-associated protein FlgK [Geobacter lovleyi SZ]
          Length = 465

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/495 (14%), Positives = 154/495 (31%), Gaps = 45/495 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L AV                 +  NI N +   Y R+  +   +             V
Sbjct: 1   MGLSAVLQIGTTGMRVYQVATEVVSENIANVNTPGYSRQRIVLETAEASTHNGFPLGSGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V         +  K L   S+  G            E +  ++   +     IS    S
Sbjct: 61  NVAAVERYYDALLQKQLVNASTTSGYDSKKSEVLQQIEPIF-NEVALDGLGAAISDYFSS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  S N S +   + V++  + +   F+ +A  V       ++ ++     +   LS++
Sbjct: 120 WQDLSVNPSGNAERQAVLNQGQALADQFHYAAGTVSDAITTQNESLQPLTDEMNNMLSDI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD-----GT 225
             +N  IK       +A++  DQRD L++++SE + +S    ++    V  +D       
Sbjct: 180 ARLNGQIKLTELVSGNANEMRDQRDYLVRQLSEKLAVSFTENSDGSTDVSYTDATGTYSL 239

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
               +           +    S    + +      +    A   G++ A L +RD+ +  
Sbjct: 240 VSGSSAGSFSLVNSGTTLPDGSARLSVQVTPAGGGAAATIAPTTGELGATLTMRDTTLQG 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           + +++D +A  +I   +         ++    F                           
Sbjct: 300 YLDEVDALAFTMINQVNAVHSAGYGLDSTQNNFFTPVAVSTGAAESM------------- 346

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                ++            +   N     +A +N      +   
Sbjct: 347 ----------------ALAFTDINKVAAAQGPLPIATGDNRNALALATLNRTNGYSDDYN 390

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  +  +  ++  +  +       ++    +  GV+L EEL+ L+K ++SY    KLI
Sbjct: 391 KLVAQVGLDVQNAATVVKQDAAFMKQLNTLRDSNSGVSLDEELTDLMKYQRSYQACAKLI 450

Query: 466 MFTDKMLQTLLEGVK 480
                ML   +  V+
Sbjct: 451 TTAGDMLDIAVNLVR 465


>gi|311070047|ref|YP_003974970.1| flagellar hook-associated protein FlgK [Bacillus atrophaeus 1942]
 gi|310870564|gb|ADP34039.1| flagellar hook-associated protein FlgK [Bacillus atrophaeus 1942]
          Length = 507

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 77/516 (14%), Positives = 165/516 (31%), Gaps = 54/516 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +      ++   N+ NA+   Y R+                      
Sbjct: 3   STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATSSFPAVSKNAEKVAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +      +  D      ++  G            E +  ++  ++  +  +
Sbjct: 63  QMGTGVEAKSVERIRDSFLDYQYRLQNNNSGYYDTRAKALGQMEGVM-NETDDSGLSSVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +    S++  + N +ED     V    ++V   FN  +  +  ++++   E++  + ++ 
Sbjct: 122 NSFWKSIQELTNNSNEDSARSVVSQKGQDVAGTFNHISESLTNVQSNLKTELDSSVLDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS+L  +N  I     S +  +   DQRDVLL K+S ++ I      +    + +S+G
Sbjct: 182 SLLSQLNSLNQQIAQVEPSGNLPNGLYDQRDVLLDKLSSLVDIKVSYNKSGGNALASSEG 241

Query: 225 TTLFETVPRDIN------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           T   E + ++                ++             +          S    G +
Sbjct: 242 TVSIEILDKNKQSLGTVLDGKDYKATELKVNYDEETGLAKSVSIGDSEIQADSFSSNGSL 301

Query: 273 KALLQIRD---------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
              +Q             + P   + LD MA     +F+E       +    G    D  
Sbjct: 302 LGFIQSYGYVTADGEEKGIYPEMLSDLDNMALEFAKAFNEVHRNGLTASGEQGGDFFDFS 361

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
               N      ++    +    S    +    S       N   LA              
Sbjct: 362 SGEANPAKGAAAKIKVTDSIKNSKGQNIAFSLSGEPNDNSNATKLASVLTGNITIS---- 417

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                          T+L+Y  + IG L     +++ L   ++   N    +      V+
Sbjct: 418 -----------GKKTTVLDYYASLIGELGIKTQEANRLAANTETQLNAADLNRQQMSAVS 466

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +I+ + +YN + +++   D+ML  ++ G+
Sbjct: 467 LDEEMTNMIQFQHAYNAAARMVTLQDEMLDKVINGM 502


>gi|325291963|ref|YP_004277827.1| flagellar hook-associated protein FlgK [Agrobacterium sp. H13-3]
 gi|325059816|gb|ADY63507.1| flagellar hook-associated protein FlgK [Agrobacterium sp. H13-3]
          Length = 492

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 157/492 (31%), Positives = 252/492 (51%), Gaps = 12/492 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN  +Q     +NI N  N NYV+R  +   +    ++V       
Sbjct: 1   MSLTSAMNTAQSIFNNTGKQTDVTSKNIANVGNANYVKRTAILGTTMSGASIVANGRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +   + +S    Q+ + +     + +   + Y +SP  Y+ +L  SL+ Y+   S+
Sbjct: 61  ESLLRQTISSASLASGQKTVLTGLEEMKSLFGGNDYESSPATYMKELLKSLDGYASKPSD 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L  T + +A +V  + N ++ E+Q +R  ADKE+ L++  L   L++    N+ +K +
Sbjct: 121 SALAATAVTSAVDVANSLNKASSELQAMRLRADKEMSLQVDKLNGLLAKFEEANNEVKAQ 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   +  D LDQR+ LL+ IS IIGI+ + R NND+ +YT+DG TLFE VPR + F+  
Sbjct: 181 TAIGGNPSDALDQRETLLKDISSIIGINVVNRENNDVALYTADGATLFEVVPRKVTFKAQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             Y  T   N I++DGV + ++ GS    +G ++ L+Q+RD + P  Q+QLDE+AR LI 
Sbjct: 241 PGYDATVTGNAIYVDGVAIKASSGSNTTAEGSLQGLMQVRDDLAPTMQSQLDEIARGLIT 300

Query: 300 SFSEKDPI---------AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            F+EK               +   P          +   L   I+    +      NP  
Sbjct: 301 MFAEKPASPTSTLPKMPGLFTYGSPAATTIPASGVVSPGLAASITVNPALIISKGGNPEL 360

Query: 351 LRDGGSVSKKFLWN--VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           LRDGG     ++ N       G+  LI+ Y  +F+    F     I+TN ++L+Y  NS+
Sbjct: 361 LRDGGINGTAYVINSTTSGGTGFSALIDSYVTAFDAPMNFAASTRIDTNTSILKYGTNSV 420

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           GWLE+ RS +   +     ++   + SYSN   V+L EELS L+ +EQSY  + KL+   
Sbjct: 421 GWLEQERSGATSANEAKSALYERSATSYSNNTAVSLDEELSLLMDIEQSYKAATKLVTTI 480

Query: 469 DKMLQTLLEGVK 480
           D ML++L++ V+
Sbjct: 481 DDMLKSLMDMVR 492


>gi|148558589|ref|YP_001258003.1| flagellar hook-associated protein FlgK [Brucella ovis ATCC 25840]
 gi|148369874|gb|ABQ62746.1| flagellar hook-associated protein FlgK [Brucella ovis ATCC 25840]
          Length = 464

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 138/484 (28%), Positives = 230/484 (47%), Gaps = 25/484 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +              R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSL--------------RNDADREIADSVANINDLLAKFEKANQDVVGG 166

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 167 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 226

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD      Q QLDE+AR L+ 
Sbjct: 227 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRD------QMQLDEIARGLVT 280

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 281 VFAESDQTGSSPDQTGLFSWSGSPAIPGADLSAGIAGTIEVSVPFIASEGGSALLLRDGG 340

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE  R
Sbjct: 341 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLEGKR 400

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             ++     +  V +    + SN  GV++  E++ L+ +E SY  S++++     ML  L
Sbjct: 401 QKANSEFTYNGTVASQADFALSNATGVDIDTEMALLLDLEHSYQASSRVLTTVSAMLDDL 460

Query: 476 LEGV 479
           L  V
Sbjct: 461 LNAV 464


>gi|121601813|ref|YP_989382.1| flagellar hook-associated protein FlgK [Bartonella bacilliformis
           KC583]
 gi|120613990|gb|ABM44591.1| flagellar hook-associated protein FlgK [Bartonella bacilliformis
           KC583]
          Length = 456

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 125/481 (25%), Positives = 225/481 (46%), Gaps = 26/481 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M+L +  N A+N     + QF  + +NI  A + NY RR +     P     V  R ++ 
Sbjct: 1   MALSSALNTARNSLKATTSQFDVVAKNIAGARDPNYTRRTSYLESGPRGAVHVAVRRDDS 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS       L +       +   D ++NSP+  +S  + +L++Y+ +  +
Sbjct: 61  PFLLDNYLVKSSQAAAAGSLANGLHRLAEIHGADGFSNSPSQLLSDFQKALQAYANDPDQ 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G   +D A ++V   N   RE++K+R DAD +I+  + ++   L +   ++  +  +
Sbjct: 121 RAAGDAAVDRARDLVNALNKGNREIEKLRNDADSDIQDSVDHINDLLQKFHDLDQKVVQE 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +  DA+ ++DQRD +L+++S+ IGI+T+   +    +Y  DG+TL++  PR + FE  
Sbjct: 181 KNAGRDAYSYMDQRDAVLKQLSQEIGINTVSHQDGSTSIYGMDGSTLYDKSPRKVTFESS 240

Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           NS         +F+DGV +   +       G +  LL++RD + P +Q QLDEMA  L+ 
Sbjct: 241 NSLPAGVAGKQVFVDGVPLGHPSFVEPNGGGNLGGLLKVRDEMAPQYQKQLDEMASALMS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F             P LF+     + +     G+S  I +NP + SN            
Sbjct: 301 IF----------PGPPPLFLDSDKPEGEIGPMVGLSGRIKLNPIFDSNTP---------- 340

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                      +   I    D+F++   F    G+ T  +L+ + +NS+GWLE  RSD+ 
Sbjct: 341 -----GGGPEHFGKDIQSLVDAFDQKREFGSDTGLATEQSLMSFGKNSMGWLEGVRSDAD 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +F   +E+ SN  GVN  +E++ ++++EQ+Y  + ++I    KML  L+  +
Sbjct: 396 KNAKYQGTMFARAAEALSNETGVNTDDEMAVMLQLEQAYAATTRIISTVGKMLDDLMIAI 455

Query: 480 K 480
           +
Sbjct: 456 R 456


>gi|15887920|ref|NP_353601.1| flagellar hook-associated protein FlgK [Agrobacterium tumefaciens
           str. C58]
 gi|15155516|gb|AAK86386.1| flagellar hook associated protein [Agrobacterium tumefaciens str.
           C58]
          Length = 492

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 159/492 (32%), Positives = 254/492 (51%), Gaps = 12/492 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN  +Q     +NI N  N NYV+R  +   +    ++V+      
Sbjct: 1   MSLTSAMNTAQSIFNNTGKQTDVTSKNIANVGNANYVKRTAILGTTMAGASIVSNGRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +   + SS    Q  + S     + +   ++Y +SP +Y+ +L  SL+ Y+   S+
Sbjct: 61  ESLLRQTISSSSLASGQSSVLSGLEEIKSIFGGNNYESSPANYMKELLKSLDGYAAKPSD 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L  T + +A +V  + N ++ E+Q +R  ADKE+ L++  L   L++    N+ +K +
Sbjct: 121 AALAATAVTSASDVASSLNNASSELQGMRLRADKEMSLQVDKLNGLLAKFEEANNEVKAQ 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   DA D LDQR+ LL+ IS I+GI+ + R NND+ +YT+DG TLFE VPR + F+  
Sbjct: 181 TAIGGDASDALDQRETLLKDISSIVGINVVNRPNNDVALYTTDGATLFEIVPRSVTFKTQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             Y  T+  N I+IDGV + +    +    G ++ L+Q+RD + P  Q+QLDE+AR LI 
Sbjct: 241 PGYDATTTGNAIYIDGVALKAGTGTNTTAAGSLQGLMQVRDDLAPTMQSQLDEIARGLIT 300

Query: 300 SFSEKDPI---------AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            F+EK               +   P          +   L   I+    +      NP  
Sbjct: 301 MFAEKPADPTSGLPNMPGLFTYGSPAATTIPPDGVVSPGLAASITVNPALIISKGGNPEL 360

Query: 351 LRDGGSVSKKFLWN--VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           LRDGG     ++ N       G+  LI  Y  +F+    F     I+TN ++L+Y  NS+
Sbjct: 361 LRDGGINGTDYVINTATSGGTGFSALIRSYVTAFDAPMNFAASTRIDTNTSILKYGTNSM 420

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           GWLE+ RS +   +     ++   ++SYSN   V+L EELS L+ +EQSY  + KL+   
Sbjct: 421 GWLEQERSGATSANEAKGALYERSAKSYSNNTAVSLDEELSLLMDIEQSYKAATKLVTTV 480

Query: 469 DKMLQTLLEGVK 480
           D+ML++L++ V+
Sbjct: 481 DEMLKSLMDMVR 492


>gi|157959896|ref|YP_001499930.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC
           700345]
 gi|157844896|gb|ABV85395.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC
           700345]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 166/486 (34%), Gaps = 36/486 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVV 53
           MS+    N   +  N +     +   N+ NA    Y R+  + +        S   V V 
Sbjct: 1   MSM---LNIGMSGLNASMAALTATSNNVSNAMVPGYSRQQVVMSSVGNGTYGSGSGVMVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +           +S +G      S+    E +   +   NS +  +  L  SL S
Sbjct: 58  GVRRISDQYQVTQQWNATSNLGFAETQASYFGQVEQIFGSE--GNSISAGLDLLFASLNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +E  L + V++ A+ + Q FN+ +  V       + +I      +   L  ++  
Sbjct: 116 AMEQPNEIALRQGVLNEAKALTQRFNSISEGVHTQVNQIEGQIGASAKEINAQLETISSF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N+ I+   AS +     LD RD  +  +S+II ++ +   NN + +    G  L      
Sbjct: 176 NEQIQASNASGNVPLSLLDARDAAIDDLSKIIDVNIVHDANNMVNISLVQGQPLLSGTTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +          +         ++ +    G + ALL  RD+ +       +E+
Sbjct: 236 SKIQVSPDPSNPLFSQLSVQFGQSSFPLDESA---GGSLGALLDYRDNSLVESIAFNNEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A+ +   F+       +                +      IS     +            
Sbjct: 293 AQTMADEFNTILKAGTDLNGNTPTQDLFTYDPTNPAGTLKISADFKPDMLAFGQ------ 346

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    +    +  +K+F FD    +  + T+ +   + IG L  
Sbjct: 347 ------------DGTPGDNSNLKALVELADKSFTFDS---MGIDATMGDAFASKIGELGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      ++ V       +++T GVN+ EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAKMAKETAEKVQIEAQSQWASTSGVNMDEEGVNLIIYQQSYQANAKVISTADQLFQ 451

Query: 474 TLLEGV 479
           T+L  +
Sbjct: 452 TILNSI 457


>gi|258622494|ref|ZP_05717516.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM573]
 gi|258585194|gb|EEW09921.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM573]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 153/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
           N A +  N          +N+ N +   + R+  + T               V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYEKHSPGMGVEVNSVRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K + + +S         +  +  E          + +  +  L  +L   +  
Sbjct: 65  ITDQFLVKQIWSTNSLASYASDYTNSMSKLENTLG--ADGLNISAGLDTLFSALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FN+ +  +     + + +    + +    +  +  +N  I
Sbjct: 123 PESIPYRQQIINESEALARRFNSLSESMNNQHKNMNDQRMAAVKHANSLMVNIAKINKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S++I + T  + +  + V  + G  L          
Sbjct: 183 TEMEGTGGNPAQLMDKRDELIGELSQVIEVKTTDQLDGSIQVTLASGQPLVMGGEYGQLK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +        S   S    G++ A+   ++ ++   Q  +++MA+ L
Sbjct: 243 AIPDPDDPQLADLHVEF---GEQSLVISGSVGGRLGAINDYQNEILKPNQVAINDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+       +    PG  +                               L      
Sbjct: 300 ADEFNAALATGTDLNKKPGKPLFTYDPANPAAS--------------------LNITDIQ 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            K+   +  +  G  D++       NK            N+++ +   + +G        
Sbjct: 340 PKQLALSGDDTPGNGDVLKKLIAIGNKPVTI----TGFGNISINDAFTSMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +     ES  N   VN  EE + L+    +YN + K+I   +++  ++L+
Sbjct: 396 ADSDYQTRASMNQQAIESRDNVSAVNSDEEAANLMTFSNAYNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|56964843|ref|YP_176574.1| flagellar hook-associated protein 1 FlgK [Bacillus clausii KSM-K16]
 gi|56911086|dbj|BAD65613.1| flagellar hook-associated protein 1 FlgK [Bacillus clausii KSM-K16]
          Length = 528

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/522 (12%), Positives = 151/522 (28%), Gaps = 46/522 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           MS        +   N       ++  N+ NA    Y R+      +              
Sbjct: 1   MSTFFGMETMRRAVNTNQTAIQTVGNNVANAKTPGYTRQRVNLQATGGYPATGVWTQPAM 60

Query: 49  ------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V V         + D+   A +   G   +        E +  +   + + + 
Sbjct: 61  NGRIGSGVQVTGIERIRDQLLDRQYRAEAHVEGAAFIQYKILERMEGLYNEAPSDTTTSR 120

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              +       + +  S       +++  + V   F    R  Q      + E EL  + 
Sbjct: 121 LSDQFDSFWNGWKELASGKESQAVLLEQGKAVTDAFTHLQRSFQTEMNMLETEAELTTAK 180

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           + + L +L   N  I+   +S    ++  D +D LL ++S ++ I      N        
Sbjct: 181 VNQILEQLHETNKDIRAAESSGQVPNELYDAQDKLLDQLSSLVPIQVSRSPNPQEHAAAG 240

Query: 223 DGTT----LFETVPRDINFEKMNSYTV---TSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                   L       I             T +    +  G        +    G++  L
Sbjct: 241 AEGPYKVELKLGGSETITLVDATEEAPQLLTLQEGMQWTVGDSNQPFTYNGAGGGELVGL 300

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
            +  + V      ++  +A+      ++    A + +   G        D          
Sbjct: 301 QKAHERVGQEL-EEIKALAQTFAKEVNQIYAFAYSEQGGFGQEFFTIHLDDAGAFSHISV 359

Query: 336 ET----------ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS---- 381
            +               +    P +  +       +  +  N   + DL+    ++    
Sbjct: 360 NSELSNNPKALATARFNEEGIKPEYKDEFAEKWAAWENDKDNEEAFRDLLAFLNEADHFV 419

Query: 382 ------FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                      +   ++ +  +  ++   R+ +G L        D    S     +   +
Sbjct: 420 GGKMIVEGDVDVAKEISRLEDSAAIMGKYRDMMGKLGVETKSQRDQTEASNARLANTESN 479

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             +  GV+L EE++ LI+ + +YN + + +   D+ML  ++ 
Sbjct: 480 RMSISGVSLDEEMTLLIQFQHAYNAAARTMTAMDEMLDQIIN 521


>gi|260574381|ref|ZP_05842385.1| flagellar hook-associated protein FlgK [Rhodobacter sp. SW2]
 gi|259023277|gb|EEW26569.1| flagellar hook-associated protein FlgK [Rhodobacter sp. SW2]
          Length = 485

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 181/492 (36%), Gaps = 21/492 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL A  + A +    +S+    +  N+ NA  + Y RR+          + + V V   
Sbjct: 1   MSLSASLSNAMSGLTASSRAAEVVSSNVANAMTEGYARREINLAALSLGGAGKGVVVTGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           + +G +    +F    E         +S    ++    +L   S
Sbjct: 61  NRVVNQSLLADRRVAEAGVGDRDARTAFLQRLESTLGTSDSASSVLGRVAAFDSALIEAS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                +     V+  A+ +    N ++ ++Q  RA AD +IE E++ L   L+ +  +N 
Sbjct: 121 SRPESEARLSNVLVAAQSLASGINAASTDIQAARASADDQIETEVATLNAGLARIAELNV 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I+ +     DA   +DQR  L+ +++ I+ +  + R +N + +YT+ G  L +     I
Sbjct: 181 QIRAQFGVSRDATALMDQRQQLVDQLASIVPLREVDRGHNQIALYTTGGIQLLDGRAAVI 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVV------VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            F  +   T         + G+        +S   S +  G + A   +RD + P  Q +
Sbjct: 241 EFTPVGVVTPDMTLASGSLSGLTLNGRSLPTSGAASMIGGGSLAAHFAVRDELAPAAQTK 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRS 346
           LD +AR L+  F++       +   PGLF   G   +        Q ++    V+P    
Sbjct: 301 LDAVARDLVERFADPAIDTTRAPGDPGLFTDAGSAFVATDEVGLSQRLALNGAVDPAQGG 360

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
               LRD              L+G   L++    +            +    +      +
Sbjct: 361 ALWRLRD------GMGAVAPGLSGNSALLSSLQTALAAPRAPVSGGFMPGARSFSSLNAD 414

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            I  +   R  +      +      + +      GV+  +E+  L+ +EQ+Y+ + ++I 
Sbjct: 415 VISGVSTARLGAEAESSFATARATALQQQELEN-GVDTDQEMQKLLLIEQAYSANARVIQ 473

Query: 467 FTDKMLQTLLEG 478
               M+  L+  
Sbjct: 474 TAGDMIDILMGI 485


>gi|167626161|ref|YP_001676455.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis
           HAW-EB4]
 gi|167356183|gb|ABZ78796.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis
           HAW-EB4]
          Length = 457

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 167/486 (34%), Gaps = 36/486 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVV 53
           MS+    N   +  N +     +   NI NA    Y R+  M +        S   V V 
Sbjct: 1   MSM---LNIGMSGLNASMAALTATSNNINNAMVPGYSRQQVMLSSVGNGVYGSGSGVMVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +S +G      S+    E +   +   NS +  +  L  SL S
Sbjct: 58  GVRRISDQYEVAQLWNTTSGLGYANTQSSYFGQVEQIFGSE--GNSISAGLDLLFASLNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +E    + V++ A+ + Q FN+ +  +       + +I      +   L  +  +
Sbjct: 116 AMEQPNEIAHRQGVLNEAKALTQRFNSISEGLNSQVTQVEGQINASAKEINTQLETIASL 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+   AS +     LD RD  +  +S II ++ +  ++  + +  + G  L      
Sbjct: 176 NAEIQSSNASGNVPLALLDARDSAIDDLSSIIDVNVVEDSSGMLNISLAQGQPLLSGTTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +          I         ++ +    G + AL+  RD+ +      +DE+
Sbjct: 236 SKLEVTPDPSNPKFSQISIQFGQSSFPLDETA---GGSLGALIDYRDNSLVDSMAFIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  +   F+       +                +                     S    
Sbjct: 293 AMTMADEFNAVLAGGTDLNGNTPTQDLFTYDPTNPA------------------GSLKMT 334

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G  ++   +      G    +    D  NK+F F     +  + T+ +   + IG L  
Sbjct: 335 AGFNAEMLAFGKDGTPGDNSNLKELVDIANKSFTFSS---MGVDTTMGDAFGSKIGELGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      ++ +     + +++T GVN+ EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAQMSKTTAENLQMEAQKQWASTSGVNMDEEGVNLIIYQQSYQANAKVISTADQLFQ 451

Query: 474 TLLEGV 479
           T+L  +
Sbjct: 452 TILNSI 457


>gi|56695116|ref|YP_165463.1| flagellar hook-associated protein FlgK [Ruegeria pomeroyi DSS-3]
 gi|56676853|gb|AAV93519.1| flagellar hook-associated protein FlgK, putative [Ruegeria pomeroyi
           DSS-3]
          Length = 483

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 171/487 (35%), Gaps = 13/487 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---TISPENVTVVTQRS 57
           M++ A  N A +    AS+       NI NA    Y RR       TI    V ++    
Sbjct: 1   MTISAALNSALSGLTAASRATGVASDNIANALTPGYARRSLEVAGNTIGGAGVRILGVVR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +  +         +A G    +  F      +  + +   S  + I++   SL + +  
Sbjct: 61  NSDPVLLASRRGADAAQGYADGVSGFHTRMARLVGNVNDPRSVPNLIAEFESSLIAAAST 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            S       V   A E+    N ++  +++ R DAD+ I  ++  L   L  +  +N  I
Sbjct: 121 PSVQTRLDAVATAASELATALNAASNGLREARNDADRSIGQQVDRLNTVLQNVETLNGRI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           +    S  D+   LDQR  L+ +++ +I ++ + R++  + ++T  G  L +     ++F
Sbjct: 181 QSVKLSGGDSAPLLDQRQKLIDEVNTMIPVNVVARDHGSVALFTDGGAILLDGPAAQLSF 240

Query: 238 EKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                           + G+ ++          SA+  G + A  ++RD +    Q  LD
Sbjct: 241 TPTLQTMPHMTLENGLLSGLELNGMPLRLSGPTSAIRGGSLAAAFEVRDDLAIEAQQDLD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +AR LI  F        +    P                        +      +P   
Sbjct: 301 AVARDLIERFEAP---GLDPTAAPTDAGLFTDNGARFSASAQTGLAGRLKLNASVDPGQG 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                +       V    G    IN +  +               ++T  +     +  +
Sbjct: 358 GQSWRLRDGLGAAVPGAVGNAQQINAFHQALTATRTPSDPRFGTGDMTANQVGAALLSRV 417

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +N S + +    +      + +      GV+   EL  L+++EQ+Y  + ++I    +M
Sbjct: 418 AQNESLATERLTFASASRTEMQKLELEQ-GVDTDVELQMLMQIEQAYAANARMIETVGEM 476

Query: 472 LQTLLEG 478
           + TLL  
Sbjct: 477 MDTLLRL 483


>gi|260779341|ref|ZP_05888233.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605505|gb|EEX31800.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 457

 Score =  211 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 150/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVSNINTPGYSRQQALMASVGGTKHDKLSPGLGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   A +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDEFLVKQTWATNSLSAYATRYSSTMSQLENTLG--ADGFSLSAGLDTLFSALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D + +    IS+    +S +  VN  I
Sbjct: 123 PESVPYRQQIINESEALARRFNTLTESLSHQHKDVNDQRNAAISHANSLMSNIADVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RD L+ ++S+++ + T  + +  + V  S G  L       +  
Sbjct: 183 VEMEGTGGNPAQLMDTRDALIGELSKVVEVKTTSQADGSLQVTLSSGQPLVMGGDAAVLK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +       P G++ AL   +  V+  +++ +D+MA+ L
Sbjct: 243 AVPDPSDPYLADLHVEFGTQSFAITDT---PGGQVGALTDYQTEVLKPYRSAIDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+       +     G  +                               L      
Sbjct: 300 ADEFNALLVTGQDLNGNAGKPLFSYDPANPAAS--------------------LTITDLK 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            ++   +     G  D+++      NK            +VTL +     +G        
Sbjct: 340 PEELALSGDGNPGNADVLDSLIAVSNKAVSISGF----GSVTLNDAFAAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLSMSEQAMAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|229916660|ref|YP_002885306.1| flagellar hook-associated protein FlgK [Exiguobacterium sp. AT1b]
 gi|229468089|gb|ACQ69861.1| flagellar hook-associated protein FlgK [Exiguobacterium sp. AT1b]
          Length = 504

 Score =  211 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/502 (13%), Positives = 153/502 (30%), Gaps = 29/502 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------IS 46
           S       A+   +       +   N+ NA N  Y R+                      
Sbjct: 3   STFMGLETARRSLSTHQWALQATGNNVANASNPGYSRQRLTLGMTEQLSVNFGGTKAGQF 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V   T       M D+     S         ++     E +  ++   N   H + K
Sbjct: 63  GTGVRGETLARIRDLMIDQQYRDESVKNAFYATKEAAFGRMEDI-INEPSENGLAHALDK 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              SL+  + N  +      V   A  + Q FN  +  + K++ D   E  +    +   
Sbjct: 122 FWSSLQDLAVNPDDTGARSVVRQRALTLTQTFNYMSSSLSKVQEDLKAEAGVVTKKINDL 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           L+++  VN  I          ++  D+RD  + ++S+ I    +  +  +     +    
Sbjct: 182 LTKIGDVNRQIGDAEPLGVLPNELYDERDRYMDELSQYIEFERVPVDYTNGETRGNSQRV 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
               +   I+     + T  +  + +      V       +          + D +    
Sbjct: 242 AEGRIDIQISVPGTPTPTKITLVDGLT---GGVGKINDMEITDAAAGTTTLVFDDLPNGK 298

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              L +M     G+ +         +++  +         D               Q   
Sbjct: 299 LKALVDMYGSATGTETHDGAFTKMLKDLDVMAKEFTTAFNDLHKTFYDGNVQDNPRQTGI 358

Query: 347 NPSFLRDGGSVSKKFLW---------NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +   + D  +V+              +     G         +  N    F   +     
Sbjct: 359 DFFIVGDAKTVTVNPTILSNLNLIAISKDQNIGDGSGALDLANLKNAQITFTGGSS-TAT 417

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            ++ +Y +N IG +    S + +L   +  + +   +   +   V+L EE++ +I+ + +
Sbjct: 418 TSIGKYYQNVIGNMAVEASQNGNLAKSTFALLSSSDQRRQSVSAVSLDEEMTMMIQYQHA 477

Query: 458 YNISNKLIMFTDKMLQTLLEGV 479
           YN + + I   D+ML  ++ G+
Sbjct: 478 YNAAARNITAVDEMLDKIINGM 499


>gi|262173360|ref|ZP_06041037.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451]
 gi|261890718|gb|EEY36705.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451]
          Length = 457

 Score =  211 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 154/481 (32%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
           N A +  N          +N+ N +   + R+  + T               V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYENHRPGMGVEVNSVRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K + + +S         +  +  E          + +  +  L  +L   +  
Sbjct: 65  ITDQFLVKQIWSTNSLASYASDYTNSMSKLENTLG--ADGLNISAGLDTLFSALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FN+ A  +     + + +    + +    +  +  +N  I
Sbjct: 123 PESIPYRQQIINESEALARRFNSLAESMNNQHKNMNDQRMAAVKHANSLMVNIAKINKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S+++ + T  + +  + V  + G  L          
Sbjct: 183 TEMEGTGGNPAQLMDKRDELIGELSQMVEVKTTDQLDGSIQVALASGQPLVMGGENGQLK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +        S   S    G++ A+   ++ ++   Q  +++MA+ L
Sbjct: 243 AIPDPDDPRLADLHVEF---GEQSLVISGSVGGRLGAINDYQNEILKPNQVAINDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+       +    PG  +                               L      
Sbjct: 300 ADEFNAALATGTDLNKKPGKPLFTYDPANPAAS--------------------LNITDIK 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            K+   +  +  G  D++       NK            N+++ +   + +G        
Sbjct: 340 PKQLALSGDDTPGNGDVLKKLIAIGNKPVAI----TGFGNISINDAFTSMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +     ES +N   VN  EE + L+    +YN + K+I   +++  ++L+
Sbjct: 396 ADSDYQTRTSMNQQAIESRNNVSAVNSDEEAANLMTFANAYNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|163794165|ref|ZP_02188138.1| hypothetical protein BAL199_02089 [alpha proteobacterium BAL199]
 gi|159180779|gb|EDP65298.1| hypothetical protein BAL199_02089 [alpha proteobacterium BAL199]
          Length = 476

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 196/487 (40%), Gaps = 18/487 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSLL     A +    A  +     RNI +A  + Y R+   T+          V V   
Sbjct: 1   MSLLNAIYSASSGIAAAQAKIDVASRNIASASVEGYTRKTQETSTRVVDGRGGLVLVEQV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    + +   +S + +  +L  F A  E+       N+S +  I+ L+   ++ +
Sbjct: 61  TRNVNAQLQRDVREQTSVVEKLTILDDFLARFELEFGRPEDNSSISSKITDLKTKFQALA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N  +      VI  A+EV    N  +  +Q +RA+AD  +E  +  + + L  +  +N 
Sbjct: 121 TNPDQSTAQNDVISAAQEVALTLNNLSARLQALRAEADLRVEDSVDIINQALQNVQSLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I  + A+     D  DQRDV + K+SE + I T  R +  + + T D   L +     +
Sbjct: 181 EIGSRKAAGESTADLEDQRDVWISKLSEQMDIKTFERPDGKIAILTGDSQFLLDQEAVTL 240

Query: 236 NFEKMNSYTVTSESNPIFID-GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            F    + +  S  N + +D G +   +  ++   G +  LLQ+RD+ +P+ Q+QLD +A
Sbjct: 241 TFVASTTVSAGSVLNDVMLDNGFMAPFSITNSFSGGTVSGLLQLRDTTLPLAQSQLDSLA 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L   F      A  ++       AD I          I     V      + +     
Sbjct: 301 FELAEQFDAITVGATTADLDLFTDAADAIPGAAAGFAAVIQVRSTVTGAELRDGTGGTFA 360

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEK 413
            S                 L     D F+   +F  V G+NT + TL E+A   I +   
Sbjct: 361 SSGVS-----------DSSLPLAIIDMFDTKQVFTAVTGLNTASSTLEEFAAQFISYQAN 409

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             +D          V N +SE  ++  GVNL EEL+ LI++E ++  S +++    + L 
Sbjct: 410 QAADYESQLQFQDQVRNLLSERLTDDSGVNLDEELASLIQLEAAFAASARVLSSVQQALD 469

Query: 474 TLLEGVK 480
            LL  ++
Sbjct: 470 ELLGAIR 476


>gi|258625228|ref|ZP_05720140.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM603]
 gi|258582475|gb|EEW07312.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM603]
          Length = 457

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 153/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
           N A +  N          +N+ N +   + R+  + T               V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYEKHSPGMGVEVSSVRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         +  +  E          + +  +  L  +L   +  
Sbjct: 65  ITDQFLVKQTWSTNSLASYASDYTNSMSKLENTLG--ADGLNISAGLDTLFSALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FN+ A  +     + + +    + +    +  +  +N  I
Sbjct: 123 PESIPYRQQIINESEALARRFNSLAESMNNQHKNINDQRMAAVKHANSLMVNIAKINKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S+++ + T  + +  + V  + G  L          
Sbjct: 183 TEMEGTDGNPAQLMDKRDELIGELSQMVEVKTTDQLDGSIQVALASGQPLVMGGENGQLK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +        S   S    G++ A+   ++ ++   Q  +++MA+ L
Sbjct: 243 AIPDPDDPRLADLHVEF---GEQSLVISGSVGGRLGAINDYQNEILKPNQVAINDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+       +    PG  +                               L      
Sbjct: 300 ADEFNAALATGTDLNKKPGKPLFTYDPANPAAS--------------------LNITDIK 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            K+   +  +  G  D++       NK            N+++ +   + +G        
Sbjct: 340 PKQLALSGDDTPGNGDVLKKLIAIGNKPVAI----TGFGNISINDAFTSMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +     ES +N   VN  EE + L+    +YN + K+I   +++  ++L+
Sbjct: 396 ADSDYQTRASMNQQAIESRNNVSAVNSDEEAANLMTFANAYNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|253575863|ref|ZP_04853197.1| flagellar hook-associated protein FlgK [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844657|gb|EES72671.1| flagellar hook-associated protein FlgK [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 523

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/522 (14%), Positives = 174/522 (33%), Gaps = 50/522 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44
           S       ++      +    ++  NI NA+ + Y R+    T                 
Sbjct: 3   STFHGIETSKRALFVNTVSMQTLGHNIANANTEGYTRQRVNLTEANPIWAMGMTKSAQPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D      +  +G   +L S     + +  ++   N  +  +
Sbjct: 63  QLGTGVEYTSITRVRDTFLDTQFRRENQMLGSWEVLNSSMTAIQNI-INEPSGNGLSAVM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               +S E+ +++ S       V   A  +V      +  +  +R D +  I+ ++    
Sbjct: 122 DDFWNSWETLNRDPSLLSARVAVAGAASNLVDTLKHISESLNNLRNDINTNIDKKVLEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L  +  +N  I+   +    A+D+ DQRD+LL ++S I+ +      N  + + ++  
Sbjct: 182 NILDNIARLNVLIRDNESFGDHANDYRDQRDLLLDQLSTIVDVQYTEDENGMVNITSAGV 241

Query: 225 TTLFETVPRDINFEKMN---------------------------SYTVTSESNPIFIDGV 257
             L       +     N                             T+ +    + +   
Sbjct: 242 NVLTGDTVTPLTAANANTATAGQLNGYVKSLQETDLIRNQLNGLVSTLVTGDIKVTLSNG 301

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
            V+S+   A+    +  +  +    V    +++     V++  F+    +  +       
Sbjct: 302 YVTSSDIVALNDVTVDGMGTVAAGTVIPAGSKITSSMDVMVKGFNGLHQLGYSLTKPSST 361

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
            I   + D          + I VNP   ++ + +            N   + G  D+ N 
Sbjct: 362 GIPFFVSDSGT----FSIDDIKVNPDILADTNKIAASSQYEVINGVNTT-IRGNSDIANA 416

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                +  F F       +  T  +Y R     L    S++   +   + + +++     
Sbjct: 417 IAGLRDAIFKFPDALTSLSEGTTDDYFRALTADLGIRASNTERNYENERTMTDNLQILRQ 476

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  GV++ EEL+ +I+ +Q+YN + + +   D+ML  ++  +
Sbjct: 477 SVSGVSMDEELADMIRFQQAYNAAARNMTVVDEMLDRVINSM 518


>gi|315649834|ref|ZP_07902917.1| flagellar hook-associated protein FlgK [Paenibacillus vortex V453]
 gi|315274808|gb|EFU38189.1| flagellar hook-associated protein FlgK [Paenibacillus vortex V453]
          Length = 552

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/517 (12%), Positives = 161/517 (31%), Gaps = 42/517 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S   +    +           +   N+ NA+   Y R+ T                    
Sbjct: 3   STFHLLEIGKRGLIAQQAAINTAGHNVTNANTPGYSRQTTRLVAANPIAFPGMQRSQAAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + R     + D      ++ +    + Q   +  E +  ++  ++S +  I
Sbjct: 63  QLGMGVEADSIRRVRDFLLDIEYRNQNTNLSTWSVQQETLSNIEGIF-NEPSDSSLSASI 121

Query: 105 SKLRDSLESYSKNLSED--ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
           ++   + ++ SKN S+        V   A  + + FN    ++  +  +    I+ +++ 
Sbjct: 122 AEFWTAWQTLSKNPSDTDLSARMAVQQKAIALTETFNHIYSQLDTLSNNLTSRIDTKVAE 181

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
              ++ ++  +  +IK       +A+D  D+RD+L+ ++S +  ++     +    V   
Sbjct: 182 ANNYIDQVAELTQSIKRIEGLGDNANDMRDKRDLLIDQLSLLGNVNVTETGDVYQ-VTFG 240

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +   + +     I      + T    +  +    V V              A  ++  ++
Sbjct: 241 NQVVVDDMTSTPITNAIAGTLTGGEIAGYVTSRDVHVQGYITQLNIMANTLATGKVEVTL 300

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNS---------------------ENVPGLFIAD 321
                          +   +    +A ++                           F++ 
Sbjct: 301 PAGTILPPGVNIPNAVMDANNPRKLAVDTKHTVDGLNGLHKLGYTLNEPATTGSDFFVSA 360

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
               +     +             ++                 +K   G   LI    + 
Sbjct: 361 NGGPITAGNMRLSQNIQSDLKNIGASLRTEMKTNPDGTTSEVVLKGNGGMALLIAGLSER 420

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                  +    +        Y ++ I  L  + S++  +     ++  H      +   
Sbjct: 421 TFSFNPNNSNGAVTDITNFEGYLQSVISKLGTDSSNAIKMVENGTLLVEHADTLRLSISS 480

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           V+L EE+S LI+ + +Y+ S++++   D+ML  L+ G
Sbjct: 481 VSLDEEMSDLIRFQHAYSASSRVVTTIDEMLDKLING 517


>gi|325295212|ref|YP_004281726.1| flagellar hook-associated protein FlgK [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065660|gb|ADY73667.1| flagellar hook-associated protein FlgK [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 451

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/482 (15%), Positives = 160/482 (33%), Gaps = 33/482 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MSL    + A     +         RNI N     Y R   +        VTV T R   
Sbjct: 1   MSLFESLSIASQALLSNKAAINVTNRNISNVYTDGYSRETPVFADIPGTGVTVETVRRIF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
              +     + +         +      E +  +D   +  +  ++   +++   +    
Sbjct: 61  NKAYFTRYISENQNNKGLSSYKDILEQIESVF-NDLQGSGFSQELTDFFNAMNDVAVKPD 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +      ++  A+ +V     S   + +I+     +I+ E++ L   L +L  +N  +K 
Sbjct: 120 DIAARSELLAKAQALVGRIRDSYSTLSEIKNTTVAKIKDEVTQLNNLLEKLAGINKDLKI 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             +     + +LD+RD  L +IS +I    +++ +  + +YT+ G  L           K
Sbjct: 180 YASDPERVNQYLDERDKTLTEISNLIDTKAVIKEDGTVDLYTAKGFALVLGNEAK----K 235

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++  T  +    +   GV ++S   +    G +K +       +      L+        
Sbjct: 236 ISFETDGNGDPILKSSGVDITSELKNGTIGGYLKGISY-----LNKVLGNLNTFTTNFAD 290

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             + +     +     G+                I+       +  +  S          
Sbjct: 291 EINAQHKAGFDLYGETGIDFFKAENGAPTIDASNITLNFEDPKKIAAAESKDYLNADNG- 349

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDS 418
                               +      + D V     + +  EY   + I  +      +
Sbjct: 350 --------------------NIKKLIALKDNVWTNLGDKSFSEYYNTDIIVAIGAELEST 389

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            DL   S  V   IS+       VN+ EEL  L + +++Y  + K++  TD++LQT+L  
Sbjct: 390 KDLLTNSDFVLQAISDKMKELSSVNMDEELLNLTRYQRAYEAAAKVVNVTDELLQTILGM 449

Query: 479 VK 480
           V+
Sbjct: 450 VR 451


>gi|225851146|ref|YP_002731380.1| flagellar hook-associated protein FlgK [Persephonella marina EX-H1]
 gi|225645441|gb|ACO03627.1| flagellar hook-associated protein FlgK [Persephonella marina EX-H1]
          Length = 485

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 159/495 (32%), Gaps = 25/495 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MSL    + A            +   NI N     Y R+       P   V + T     
Sbjct: 1   MSLFYSLSIAGQSLLTHKNAINTTNSNISNVYTDGYSRKIPQLANIPTGGVELKTVERAF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
              +       ++        +      E +  +D   +     +++  +S    + N  
Sbjct: 61  NQAYFNRYVNTNNLKTGYENYKDILQQVESVF-NDIQGSGFADELNQFFNSFNDIAVNPD 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +     + +  AE +V     S   +  I+      I   ++ L     ++  VN  I+F
Sbjct: 120 DIAARYSALSKAEALVGRIRNSYETLTDIKEKTSLSIRDNLNRLNDLTGQIATVNKNIRF 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            TA     +++LD+RD LL++IS +I +    R++  + + T  G  L           +
Sbjct: 180 YTADPAKRNEYLDERDRLLKEISSLIDVKVTFRDDQTVDISTVKGHPLVIFDRNIPLTYE 239

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +S         I  +G  ++         G ++ +       +    N+L++   VL  
Sbjct: 240 TDSNGDP----VIRHEGTDITFLFDKGKIGGYLQGI-----KKINESINKLNDFTTVLAM 290

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLD-----------NKLCQGISETICVNPQYRSNP 348
             +++     +     G+         +                             S+ 
Sbjct: 291 VVNKQHRAGFDLNGNTGIDFFTIDPSSNKNNLDASNIVVGITDPESIAAASDPAYTNSDN 350

Query: 349 SFLRDGGSVSKKFLW--NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + ++   ++                    +                    N +  E+  +
Sbjct: 351 TNIKKIIALKDDITGVLTAAEETTLSTTGSLTIGGITYTLNSFDSYTFIKNKSYSEFYSS 410

Query: 407 -SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             I  L    +   +L+ +  ++   +         VNL EEL  L K++++Y  S K+I
Sbjct: 411 EMIAPLGFEINRVENLYQEQNLILETVDSKMKEISSVNLDEELINLTKLQRAYEASAKII 470

Query: 466 MFTDKMLQTLLEGVK 480
             TD++LQTLL  VK
Sbjct: 471 NVTDELLQTLLGLVK 485


>gi|284989567|ref|YP_003408121.1| flagellar hook-associated protein FlgK [Geodermatophilus obscurus
           DSM 43160]
 gi|284062812|gb|ADB73750.1| flagellar hook-associated protein FlgK [Geodermatophilus obscurus
           DSM 43160]
          Length = 482

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/493 (12%), Positives = 151/493 (30%), Gaps = 37/493 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------- 48
           S     N A+     + +      +NI N +   Y R+                      
Sbjct: 3   STFGGLNTARTALWASQRGLDVTGQNIANVNTDGYSRQRVELRAMGGTAVPAIHSVSSPV 62

Query: 49  --NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V             ++     ++   Q  +     A  E     +         +  
Sbjct: 63  GNGVDANQVDRIRDVFLERRGQVETARTAQLTVGNEALAQVEAAFR-EPGETGIRSMLDD 121

Query: 107 LRDSLESYS--KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +     + +   + +E  +   V++  + +     T+   + +        +    + + 
Sbjct: 122 VWAGFSALANATDPTEPAVRSQVLERLDILASGMRTTRATLDQQWRQTRDNVVALAAEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              S +  +N  I+  T S    ++  D+RD+L+ +++E +G +++  ++  + V     
Sbjct: 182 TTASSIADLNTQIRQATRSGLPTNELSDRRDLLVVQLAEKVGATSVAASDGMVDVIVGGT 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           T +       +    ++        N   +   V +    +    G     + +  + +P
Sbjct: 242 TLVAGGSALGLRVAGVDDPDAVGAGNDPRV---VTAPGGTTLAVGGTAGGQMAVLSTTLP 298

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            ++N LD +AR L+G  +       +     G           N +    +         
Sbjct: 299 SYRNALDGLARDLVGKINAVQAQGYDVYGASGAAEPLMDDGSGNPVVDLANVDAGNIRVR 358

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            + P  +    + +   L       G  D                       N  +    
Sbjct: 359 VTRPELIAA-ATTAPGVLGAPSADGGNADAFFDLSL---------------ENGGVDATY 402

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           R  +  L    S         +V+   +  +  +  GVNL EE++ ++  + +Y+ + ++
Sbjct: 403 RALVVALGVEASVVARDVAVQKVISTQVDAARESVSGVNLDEEMTNMLSFQHAYSAAARM 462

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L TL+ 
Sbjct: 463 VTAIDEALDTLIN 475


>gi|312884828|ref|ZP_07744520.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367480|gb|EFP95040.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 457

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/481 (13%), Positives = 151/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRS 57
           N      N +        +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIGLTGLNASRVALDVTAQNVANINTPGYSRQQALMASVGGPKHDKLSAGAGVEVPSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +     K     +S         +  +  E          S +  + K  ++L   S  
Sbjct: 65  ISDEFLVKQTWQTNSIASYAERYTTNFSQLENTLK--ADGFSISTGLDKFFNALNDASVT 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                L + +I+ AE + + FNT    +     +   +    +++    +  +  +N+ +
Sbjct: 123 PDSTPLRQQIINEAEALSRRFNTLTESLYNQHKEMSDQRTATVNHANSLMVNIADINNQV 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    LD+RD L+ ++S++I + T  + +  + +  S G  L          
Sbjct: 183 VEMRGTGGNPAQLLDERDSLIGELSKLIEVKTTKQADGSLQLSLSSGQPLVIGGDAGQIQ 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              ++         I      V          GK+ AL   +  ++  +++ LD+MA  L
Sbjct: 243 ALPDAGDPYLAKMQIEF---GVQVYPVPGAMGGKMGALNDYQTDILKPYRDALDDMASNL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               +       + +  PG  + +                             L      
Sbjct: 300 ADEVNTVLATGLDLQGNPGAALFEYDPANPAAS--------------------LNITSIT 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  ++     G  D++       NK            N +L +   + +G        
Sbjct: 340 PDQLAFSSDGNHGNSDVLKDLVALSNKAMAVSGF----GNTSLNDAFVSMVGKTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +    ++      +  N   VN  EE + L+    ++N + K+I   +++ +++L 
Sbjct: 396 ASSDYKAKSLLNEQAIAARDNVSSVNSDEEAANLMTFANAHNANMKVISTANELFESVLR 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|327478815|gb|AEA82125.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri DSM
           4166]
          Length = 459

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/486 (14%), Positives = 149/486 (30%), Gaps = 36/486 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------TISPENVTV 52
           MS+L+      +    +     +  +NI N +   + R             T     V V
Sbjct: 1   MSVLS--QIGYSGVRASQIALTATGQNIANVNTPGFSRLAPEMHSVGGQTATSIGGGVQV 58

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + R  + +  ++ L   S+        Q +    E +   +   +S +  +     +L 
Sbjct: 59  SSIRRLSNDFQNQQLWRASTDKNYYGTSQQYLTALEGLIHSE--GSSVSVGLDNFFAALS 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S       L + +I  A ++ Q FN     +         +    ++ +      +  
Sbjct: 117 EASSTPESIGLRQQIIGEARQLAQRFNGLNGNIGTQLNALQGQRVAMVAEINGLSGNIAE 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    ++  D     D R+ L++ +S+  GI      +  + V  ++G  L     
Sbjct: 177 LNAEILKMESAGRDTATLRDYRENLIKDLSQYAGIRVQEVADGTLTVSLANGQPLVAGTT 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 + N     +    + +     +         G + AL  +    +   Q  L +
Sbjct: 237 AGQLRVEQNL----AGEQELTLVFAKTTFPLVQEGLGGSLGALYDMEYGALRPAQADLHD 292

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  L    ++      +    PG  +                          S    L 
Sbjct: 293 MAAALAQMVNDTLAGGFDLNGNPGQPLFVHTP--------------------GSTSGMLA 332

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                 ++  ++    +G  ++ N+             V    ++V L +     +G + 
Sbjct: 333 VTALTPEQLAFSSAGQSGTGEVGNNQNLLALLELKSAKVNVAGSDVPLNDAYAGLVGRVG 392

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +      + VV         +   VNL EE   L+  EQ+Y  + K+I  ++ + 
Sbjct: 393 SASRQNKADLAAATVVAEQAQAQRDSVSAVNLDEEAVNLMAYEQAYQANMKVISTSNDLF 452

Query: 473 QTLLEG 478
             +L  
Sbjct: 453 NAVLAM 458


>gi|255099395|ref|ZP_05328372.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-63q42]
 gi|255305252|ref|ZP_05349424.1| putative flagellar hook-associated protein [Clostridium difficile
           ATCC 43255]
          Length = 436

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/495 (16%), Positives = 170/495 (34%), Gaps = 79/495 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++ N A +  N   +   +I  NI N D   Y R+ T    +               
Sbjct: 3   GLFSILNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIARG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V        + +D    A +   G+      +    E +  ++  +   +  I
Sbjct: 63  QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGKTVSKYDYYNTIETIL-NEPSDYGISAGI 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                  ES SK+++ D     V++NA  +    + S +++ K++ D D  I+ EI  + 
Sbjct: 122 DDFFKGWESLSKDINSDSKKSLVVENASNLATLISESYKKLDKLKEDIDSNIDTEIKQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L  L  +N +I   + S    +D LD+RD +L  +S  +        N          
Sbjct: 182 DMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDFENSDVKNMLAD------ 235

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                                      + ++ +            G ++ L ++    + 
Sbjct: 236 -------------------------GKLELNELKNPDGTWKTGISGTLQGLFEMH-GKID 269

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            +++ L +++  L    ++    +              + D          + I +NP  
Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNTSAGIT----------VTDFFITSNVDGEDIIKINPAI 319

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +SNP+ L+     + K                    +  K+   D         T+ ++ 
Sbjct: 320 KSNPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +     +  +    +      + + N+I  S  +  GV+L EE++ LIK+++SY  S K+
Sbjct: 361 KAFAESIGLDSQKVNQDEANQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKV 420

Query: 465 IMFTDKMLQTLLEGV 479
           +    ++L  ++ G+
Sbjct: 421 MSTAVQLLDVVINGI 435


>gi|172058468|ref|YP_001814928.1| flagellar hook-associated protein FlgK [Exiguobacterium sibiricum
           255-15]
 gi|171990989|gb|ACB61911.1| flagellar hook-associated protein FlgK [Exiguobacterium sibiricum
           255-15]
          Length = 509

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 61/503 (12%), Positives = 146/503 (29%), Gaps = 26/503 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S        +           S   NI NA    + R+  +   +               
Sbjct: 3   STFMGIETGRRALTTNQWALQSTGNNIANAGTAGFSRQRLVMATTEQLSMAIGTGKMGQI 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V           M DK     ++        ++     E +  ++  +         
Sbjct: 63  GTGVRGEILERVRDVMLDKQYRDEATKTAYYGTKEAAFGRMEDI-INEPSDTGLAKAFDG 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             +SL++ S N  +      V   AE + Q FN  ++ + +++ D   EI++    +   
Sbjct: 122 FWESLQTLSTNPQDSGARSVVRQKAETLTQTFNYMSKSLSQVKEDLKSEIDVSTKKVNDL 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             ++  +N  I          +   D+RD  + ++++ +    +  +   +        T
Sbjct: 182 FKKIHNINAEIHTVEPLGVLPNALYDERDRYMDELAQYVDFEKVSVDAEAITQGKLGNAT 241

Query: 227 ---------LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                    L +    +      +        +    D  + +  + ++       A   
Sbjct: 242 KTAEGRIDILVKLPNGNKLRAVDSDVAQAGILSFTTNDKGLYTGFETNSQTISFDAAGGG 301

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
             +  +        ++          K     +          +     + K  +     
Sbjct: 302 FANGRIAGLLEMYGQIKNGQPTGEFVKMQSNLDEMATTFATAFNAAHAANFKKDKTNGTD 361

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV-AGINT 396
                   S  +     G   K  L N+          +       +      + A   T
Sbjct: 362 QFFVATSGSISAATIAVGQDIKGSLDNIATSTDGNIGDSAGALKLAQMKTTSLLFATSVT 421

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             T+  + +N IG +         L   S V+ +   +   +   V++ EE++ +I+ + 
Sbjct: 422 TTTIGSFYQNVIGDMGVATDQVGRLGQSSAVLMDSAEQRRMSVSAVSIDEEMTMMIQYQH 481

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
           +YN + + I   D+ML  ++ G+
Sbjct: 482 AYNAAARNITTVDEMLDKIINGM 504


>gi|294675565|ref|YP_003576180.1| flagellar hook-associated protein FlgK [Rhodobacter capsulatus SB
           1003]
 gi|294474385|gb|ADE83773.1| flagellar hook-associated protein FlgK [Rhodobacter capsulatus SB
           1003]
          Length = 484

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 183/491 (37%), Gaps = 20/491 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MS+ + FN A +    +S++   +  NI NA  + Y RR+          +   V ++  
Sbjct: 1   MSIASAFNFAISGLTASSRKAEVVSSNIANAMTEGYARRELSIASQTLGGTGGGVRILGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 +  + L    SA         F    E    D     S +  +S    +L + +
Sbjct: 61  NRIVNQVVQQDLLLMDSAAANTTAKADFYNRLETQIGDPETAGSLSATMSDFESALLTAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                     T +  A  V    N+ + ++Q  R  ADK I  ++  L   L +L  +N 
Sbjct: 121 SMPDSTARLTTAVRAASTVADKLNSISEDLQAARLTADKSIAKQVRTLNETLVQLQEMNR 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I  + +  +DA   +D+R  L+ +I+EI+ +  + R NN + ++T+ G  L +     I
Sbjct: 181 TITTQISIGNDAAGLMDERQSLVNQIAEIVPLRVVQRENNQIALFTTGGAILLDGSAATI 240

Query: 236 NFEKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
            F+            +   + + I+G   S+     +  G + A   +RD + P  Q+QL
Sbjct: 241 GFDGAGVMAPHLTLDSGALSGLTINGYPTSTKDDGPLGGGTLGAAFAVRDELAPEAQSQL 300

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL---CQGISETICVNPQYRSN 347
           D  AR L+  F +       S   PGLF   G     +        I     V+P+   +
Sbjct: 301 DAFARDLMTRFEDPSVDTTLSAGDPGLFTDAGSAFDASTEVGLAGRIRMNAIVDPEQGGS 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              LRD        +           ++N    +  +          +   +    A   
Sbjct: 361 SWHLRD------GLMAAAPGAVSDGTILNALSAALTRESAPASGNYGSALRSASGLAAEL 414

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           + +    R  +      +      ++E      GV+   E+  L+ +E++Y  + K++  
Sbjct: 415 LSFASSGRQSAELTQGYATARHEALTEMSLAD-GVDTDYEMQSLLVIEKAYAANAKVVQT 473

Query: 468 TDKMLQTLLEG 478
            D MLQ LL+ 
Sbjct: 474 IDAMLQELLDI 484


>gi|296452609|ref|ZP_06894303.1| flagellar hook-associated protein FlgK [Clostridium difficile
           NAP08]
 gi|296880979|ref|ZP_06904925.1| flagellar hook-associated protein FlgK [Clostridium difficile
           NAP07]
 gi|296258570|gb|EFH05471.1| flagellar hook-associated protein FlgK [Clostridium difficile
           NAP08]
 gi|296428000|gb|EFH13901.1| flagellar hook-associated protein FlgK [Clostridium difficile
           NAP07]
          Length = 436

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/495 (16%), Positives = 175/495 (35%), Gaps = 79/495 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++ N A +  N+  +   +I  NI N D + Y R+ T    +               
Sbjct: 3   GLFSILNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V        + +D    A +   G+      +    E +  ++  +   +  I
Sbjct: 63  QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGKTVSKYDYYNTIETIL-NEPSDYGISAGI 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                  ES SK+++ D     V++NA  +    + S +++ K++ D D  I+ EI  + 
Sbjct: 122 DDFFKGWESLSKDINSDSKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L  L  +N +I   + S    +D LD+RD +L  +S  +        N          
Sbjct: 182 EMLKSLEDLNKSIDIISGSGSMPNDLLDERDRILDNLSFKLDFENSDVKNMLAD------ 235

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                                      + ++ +  +         G ++ L ++    + 
Sbjct: 236 -------------------------GKLELNELKNADGTWKTGVSGTLQGLFEMH-GKID 269

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            +++ L +++  L    ++    +              ++D          + I VNP  
Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNTSAGIT----------VRDFFVTSNVDGEDIIKVNPAI 319

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +SNP+ L+     + K                    +  K+   D         T+ ++ 
Sbjct: 320 KSNPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +     +  +    +   +  + + N+I  S  +  GV+L EE++ LIK+++SY  S K+
Sbjct: 361 KAFAELVGLDSKKVNQDEVNQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKV 420

Query: 465 IMFTDKMLQTLLEGV 479
           +    ++L  ++ G+
Sbjct: 421 MSTAVQLLDVVINGI 435


>gi|260429026|ref|ZP_05783003.1| flagellar hook-associated protein FlgK [Citreicella sp. SE45]
 gi|260419649|gb|EEX12902.1| flagellar hook-associated protein FlgK [Citreicella sp. SE45]
          Length = 485

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 189/490 (38%), Gaps = 17/490 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---SPENVTVVTQRS 57
           MSL    + A +     S+  + +  NI NA  ++Y RR   T+        V +     
Sbjct: 1   MSLSGALSNALSGLTANSRAASLVASNIANATTESYGRRTLETSSRTVGVGGVQIDGVNR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                         +  G    +Q+F +  E +        S + + S   +++ S S +
Sbjct: 61  RIDTAVLSDRRLSDAQTGFAENMQTFASKIESLLGPSGEAGSLSSFYSAFENAILSASSD 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            S     +TV   A++ V   N  +  +Q  RA AD+ I  ++ +L   L  +  +N+AI
Sbjct: 121 PSSTQRLQTVALAAQDFVGKLNDVSTTLQLSRATADRTIAAQVDSLNTALGRVKDLNEAI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PR 233
                   DA   +D+R  ++ ++SEI+ + T+ R+N  + VY + G  L +      P 
Sbjct: 181 AESMYRNGDASSLMDERQRVIDQVSEIVPLRTVQRDNGMIAVYAASGNPLLDPTIHSEPA 240

Query: 234 DINFEKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +I F   N  T          + + I G  V+S     +  G + A LQIRD+V    Q+
Sbjct: 241 EIGFTAQNLVTADMTLGNGLLSGLTISGKAVNSTNEGPLGGGTLGAQLQIRDTVAVELQS 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            LD +AR LI  F    P        PGLF   G+                      ++ 
Sbjct: 301 VLDGIARDLIERFEPGGPDTTLVAGDPGLFTDAGLAFDPLNEVGLAGRISLNALVDPTDS 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
              R    +      +V    G   L+  Y D+     +    +      +  E+  + +
Sbjct: 361 GTWRLRDGLGAATQGDV----GDARLLQAYSDALESLNVPGSTSLGTGAFSFGEHVGDFV 416

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +   R  +      S      + E   +  GV+   EL  ++++EQ Y  + ++I   
Sbjct: 417 SAVSTARVRADGQQSFSNAQNTALKELELSA-GVDTDAELQEMLRIEQHYAANARVITTV 475

Query: 469 DKMLQTLLEG 478
           D+++QTLL  
Sbjct: 476 DELMQTLLSI 485


>gi|330447910|ref|ZP_08311558.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492101|dbj|GAA06055.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/483 (14%), Positives = 160/483 (33%), Gaps = 37/483 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVTQR 56
            + N   +  N           N+ N +   Y R+  M +         +   V V + R
Sbjct: 2   NMINIGLSGLNANKTALDVTAHNVANVNTVGYSRQQAMMSALAGRELFSAGSGVEVDSIR 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +     K + A +S         +   + E +   + +N   +  +  L  +L   + 
Sbjct: 62  RVSDQFIVKQMWAATSQQAASNANLANMTMLESLLGGEGFN--ISAGLDSLFSALNDATL 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                   + +I+ A+ + + FNT +  +         +    I +    +S +  +N  
Sbjct: 120 KPESTPNRQQIINEAKALSRRFNTLSESLHGQGNRISDKATASIEHANSLMSNIADINHR 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +    A+  +    +D+RDVL++++SE++ IS+  + N  + V  + G  L         
Sbjct: 180 VVETQATGGNPSQLIDERDVLIKQLSEVVEISSTQQPNGSLQVTLASGQPLILGSDAAQL 239

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                      ++  I   G   +    +    G++ A      + +   Q  L+EMA  
Sbjct: 240 KATPIVNEPFIQNIEIDFAGQTFAV---TGEFGGQLGAYDDYLKNTLKPTQQVLNEMAEN 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L   F++      +    PG  +     +                         L     
Sbjct: 297 LASEFNQVLASGFDLNGDPGQALFSFAPNSPAAS--------------------LDITAI 336

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +     G  D +    +   K    + +     NV+L +   + +G       
Sbjct: 337 TPAELALSSDGTPGNSDTLQALINLSTKPMAINGL----GNVSLNDAFASMVGKTAIETR 392

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ + +  + +  N   VN  EE + L+    +Y  + K+I   +++  ++L
Sbjct: 393 QAAVDQKAAETLSSQANAARDNLSAVNSDEEAANLMTFTNAYQANMKVISTANELFDSVL 452

Query: 477 EGV 479
             +
Sbjct: 453 RLL 455


>gi|126738558|ref|ZP_01754263.1| flagellar hook-associated protein K [Roseobacter sp. SK209-2-6]
 gi|126720357|gb|EBA17063.1| flagellar hook-associated protein K [Roseobacter sp. SK209-2-6]
          Length = 484

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/483 (16%), Positives = 174/483 (36%), Gaps = 8/483 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSE 58
           M++ +  N A +     ++    +  N+ NA    Y  +    + +       V      
Sbjct: 1   MTITSAINSAMSGLTANARSSQVVSENLANALTPGYSAQRLNLSTNSYTGGTKVDGVERL 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                        +         +F +    +      + S +  +S    +L       
Sbjct: 61  IDPALQASARTAEAEHSAAETYANFYSRMSSLVGVVDDDTSISAQVSNFDSALIEAVSRP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                   +   A+ VV+    +A  +  +R +A+  I  ++  L   L E+  +N  I 
Sbjct: 121 DSTERLHQLSVQADLVVKTITHAADGLNALRVEAETSINSQVRTLNNSLKEIEKLNARIV 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              A+        DQRD L+ ++++II ++ + R+   + +Y+  G  L +    +I F+
Sbjct: 181 VSEAAGTSTTAMQDQRDKLIDEVNKIIPVNVLSRSQGRVALYSEGGVALIDGRASEITFD 240

Query: 239 KMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            + +            N + ++G ++ ++    +  G + A   IRDS     QN LD +
Sbjct: 241 ALQTIEPHMTLDNGLLNGLEVNGKLIDTSADGPLRGGTLAAQFDIRDSAAVEAQNDLDAL 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A+ L+  F +    A       G+F   G    +      +  +  +      + S   +
Sbjct: 301 AQDLVERFQDPALDATLGATDAGIFTDAGGFFDNTVPANTVGLSARLELNSSVSLSGAAE 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                       +   G   L+  Y D   +              +L   + + +    +
Sbjct: 361 TWRFRDGINAASQGDPGNASLLTAYSDRLAETRSVSTTKLGAITGSLNTLSASVMSRFAR 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +   ++     +   F+ +S++     GV+   EL  L+ +E++Y  + K++   D+M+Q
Sbjct: 421 DSDTANSTMSFAAASFSEMSKAKLAL-GVDSDAELQNLMIIERAYAANAKMLEAVDEMMQ 479

Query: 474 TLL 476
           TLL
Sbjct: 480 TLL 482


>gi|268317787|ref|YP_003291506.1| flagellar hook-associated protein FlgK [Rhodothermus marinus DSM
           4252]
 gi|262335321|gb|ACY49118.1| flagellar hook-associated protein FlgK [Rhodothermus marinus DSM
           4252]
          Length = 464

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/495 (14%), Positives = 166/495 (33%), Gaps = 48/495 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MSL  +F+  +           ++ +N+ NA+ + Y RR                     
Sbjct: 1   MSLNQLFSLTRRSFQTIQAAMNTVGQNVANANTEGYARRRVTLQAVNIRDTGIYTALPPR 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           + +   V+V T      ++ D       +++G          + E + A D  +      
Sbjct: 61  SATGLGVSVATYERLRDHLLDVAAWDARASLGAADEETRIYQVLESLLAAD-DDTGLAAL 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           ++   +     + N ++  + + +   A+ ++  F+  AR++  +     + +   +   
Sbjct: 120 LNDFWNRWSDLADNPTDTGVREALRGQAQTLIDTFHRLARDLDTLTIQTTETLRDAVDQA 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L EL  +N  I+      +      D+RD L+ +++E++ +      +    +    
Sbjct: 180 NSLLEELASLNATIQAARQKGNPDLVAEDRRDQLVHELAELLPVQVHALEDGSYQLTVGG 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              +       +  +        +  N                   G+I A L++    +
Sbjct: 240 MALVQGDQVMPLTLDLSGGTPSLTFGNTGIAFRAPEG-------QDGRIGAQLRMLTQTI 292

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P  + +LD +A  L+   + +       + + G    D               TI ++  
Sbjct: 293 PDVRQRLDTLAATLVNEVNSRHASGYGLDGLTGRAFFDPAGTTA--------STIALSAD 344

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++   +                 +G P        +     + D +       T   Y
Sbjct: 345 VLADSRAIA---------------ASGDPTAPGDNSVALQIAGLRDALLFNGGTETAETY 389

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
           A N  G +     D+     +S+   +H+       +GV+L EEL+ +I+ +Q+Y  + +
Sbjct: 390 AINLAGIIGAAAKDATGRLERSRATIDHLDALQQGVMGVSLDEELTNMIRFQQAYAATAR 449

Query: 464 LIMFTDKMLQTLLEG 478
           ++     M+ TLL  
Sbjct: 450 VLDTARSMMDTLLNL 464


>gi|329928727|ref|ZP_08282576.1| flagellar hook-associated protein FlgK [Paenibacillus sp. HGF5]
 gi|328937508|gb|EGG33926.1| flagellar hook-associated protein FlgK [Paenibacillus sp. HGF5]
          Length = 523

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 160/517 (30%), Gaps = 42/517 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S   +    +           +   N+ NA+   Y R+ T                    
Sbjct: 3   STFHLLEIGKRGLIAQQAALNTAGHNVTNANTPGYSRQTTRLVAANPIAFPGLQRSQAAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +     + D      ++ +    + Q   +  E +  ++  ++S +  I
Sbjct: 63  QLGMGVEAESIQRVRDFLLDIEYRNQNTNLSTWSVQQETLSNIEGIF-NEPSDSSLSASI 121

Query: 105 SKLRDSLESYSKNLSED--ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
           ++   + ++ SKN S+        V   A  + + FN    ++  +  +    I+ +++ 
Sbjct: 122 AEFWTAWQTLSKNPSDTDLSARMAVQQKAIALTETFNHIYSQLDTLSNNLTSRIDTKVAE 181

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
              ++ ++  +  +IK       +A+D  D+RD+L+ ++S +  ++     +    V   
Sbjct: 182 ANNYIEQVAELTQSIKRIEGLGDNANDLRDKRDLLVDQLSLLGNVNVTETGDVYQ-VTFG 240

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +   + +     I      + T    +  +    V V              A  ++  ++
Sbjct: 241 NQVVVDDMTFTPITNAIAGALTGGEIAGYVTSRDVHVQGYITQLNIMANTLATGKVEVTL 300

Query: 283 VPIFQ-----------------NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK- 324
                                  +L E  +  +   +    +               +  
Sbjct: 301 PAGTILPPGVNIPNAVMDANNPRKLAEDTKHTVDGLNGLHKLGYTLNEPATTGGDFFVSA 360

Query: 325 ---DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
               +     +             ++                 +K   G   LI    + 
Sbjct: 361 NGGPITAGNMRLSQTIQSDLKNIGASLRTEMKTNPDGTTSEVVLKGNGGMALLIAGLSER 420

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                  +    +        Y ++ I  L  + S++  +     ++  H      +   
Sbjct: 421 TFSFNPNNSNGAVTDITNFEGYLQSVISKLGTDSSNAIKMVENGTLLVEHADTLRLSISS 480

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           V+L EE+S LI+ + +Y+ S++++   D+ML  L+ G
Sbjct: 481 VSLDEEMSDLIRFQHAYSASSRVVTTIDEMLDKLING 517


>gi|327441344|dbj|BAK17709.1| flagellar hook-associated protein [Solibacillus silvestris StLB046]
          Length = 562

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 68/556 (12%), Positives = 167/556 (30%), Gaps = 79/556 (14%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       ++           +   NI NA+   Y R+      +               
Sbjct: 3   STFMGLEASKRGLYTQQSALYTTGHNISNANTLGYSRQRVNMETTPGFPGAGLNSGKTAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +       D+     ++ +G  +      +  E + + +          
Sbjct: 63  HIGTGVQASSVQRIRDEFVDRQYRQETNKLGYWQSTTQSISQMEDVMS-EPTEFGINQAF 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           ++   S+E    N  +    + +I   + + ++FN    ++++I+ +   EI +  S + 
Sbjct: 122 TEFWKSMEDVVTNPKDTAARQVMISKGQSLAESFNYMDTQLKQIQGNIGNEINVVTSEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  +N  ++    + +  +D  D RDVLL K++++I +S     +    +  ++G
Sbjct: 182 SLLKQIADINKQVQAIEPNGYMPNDLYDARDVLLDKLNDLIPVSISFEKSGGNALAIAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK------------I 272
           +      P + +   +      +E + +   G  V  +       G             +
Sbjct: 242 SMTVTFKPVNGDPIILVHSKNYAELSTMDSKGKPVDGDVDEDDTAGYASFSGIVVKGSIL 301

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           K      D+      ++                    +S+      I        +    
Sbjct: 302 KEENPNYDATTNPTVSKYLYKIDANPTGKEVAYNQLEDSKGKLAALIDAYGYVEKDSTGT 361

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--LINHYCDSFNKNFIFDP 390
            I +           P  L+    ++ +F+     +  Y +  + N   +          
Sbjct: 362 VIVDGNGKPIVKGIYPEMLQKLDKLASEFINAFNGMHAYSEDPVTNAVINQAYNLKGDKA 421

Query: 391 VAGINTNV-----------------------------------------------TLLEY 403
               +                                                  T   +
Sbjct: 422 GNFFDGTTAKNMKVLDGMKPEDIAASNVLGEEGNNKNILALSALQSAVQGNLQGGTFQSF 481

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            ++ IG L      +  L   S  +   I  + ++   V+L EE++ +I  +Q+YN + +
Sbjct: 482 YKSLIGELGVKGQQALTLEYNSTTLLLQIENNRASHNSVSLDEEMTNMITFQQAYNANAR 541

Query: 464 LIMFTDKMLQTLLEGV 479
           +I   D+ L  ++ G+
Sbjct: 542 MITVIDETLDKIINGM 557


>gi|255263716|ref|ZP_05343058.1| flagellar hook-associated protein FlgK [Thalassiobium sp. R2A62]
 gi|255106051|gb|EET48725.1| flagellar hook-associated protein FlgK [Thalassiobium sp. R2A62]
          Length = 479

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 174/488 (35%), Gaps = 21/488 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MS+ +  + A +    AS+    +  N+ N+    Y RR    +          V +   
Sbjct: 1   MSISSSLSNALSGLTAASRAAEIVSSNLANSLTDGYARRRLDLSSQLTGGVGGGVQIDGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           + +G      +F    E +        + T  +++L  SL + S
Sbjct: 61  ARLVDRGVLADRRISDANLGFADTSVAFFRNLERVMGVPGDPGTLTDRLTQLETSLIAAS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              S +     V  +   +    N     +Q  R  AD  I   +  L   L+ +  ++D
Sbjct: 121 IQPSSEQRLDAVGQSFLGITAELNRLTDSIQTDRERADASIAANVDELNASLALIDKLSD 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     S  D    LDQR + +  +S+II +  + R+NN + + ++ G TL+++ P   
Sbjct: 181 DITTIRISGADISALLDQRQLAIDAVSKIIPVQEVSRDNNQIALVSAGGGTLYDSQPAIF 240

Query: 236 NFEKMNSYTVT----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           +FEK ++ T      +    +  +G  V+  + +    G ++    +RD      Q +LD
Sbjct: 241 SFEKTSTITGELSVINGLGHLKFNGTSVNFLENNPFDGGILEGHFDVRDEFAVQAQTELD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-QYRSNPSF 350
           E+A  LI  F   D     ++ +    +               +            + S 
Sbjct: 301 EIAASLIDRFQGDDVDPTQTDVLGIPALGIFTDGGQAFSSGNEAGVAGRISINELVDVSQ 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                           +  G P  I ++  + +       +A           A +    
Sbjct: 361 DGKSQLFRDGLYDEGGSELGDPTQIQNWLGALSTPLSDSALAE----------ATDVFSK 410

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +   R  S          +  + ++  +  GV+  +E+  L+ +EQ+Y+ + K+I   D+
Sbjct: 411 IGSRRLISERNFSFENARYETLKQAELSD-GVDTDQEMQNLLLIEQAYSANAKVIQTVDE 469

Query: 471 MLQTLLEG 478
           M+QTLL  
Sbjct: 470 MMQTLLRL 477


>gi|159045918|ref|YP_001534712.1| flagellar hook-associated protein FlgK [Dinoroseobacter shibae DFL
           12]
 gi|157913678|gb|ABV95111.1| flagellar hook-associated protein FlgK [Dinoroseobacter shibae DFL
           12]
          Length = 485

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 181/487 (37%), Gaps = 15/487 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MS+ +    A +    AS+  + +  NI NA  + Y  R   TT          V VV+ 
Sbjct: 1   MSVTSTLGNALSGLTAASKAASVVSSNIANATTEGYGVRQVQTTSVSLNGQGSGVQVVSV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                        A  +A  Q   L SF    E          S +   S+   +L    
Sbjct: 61  SRNVNEGVLADRRAADAAYAQAATLASFYGSVEGAIGLPGDEGSLSSEFSQFEAALVEAG 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                D     V+  AE +    N  + ++Q  R +A+KEI  ++ NL   L+++  +N 
Sbjct: 121 SRPDSDARLANVVRAAESLAGTLNDLSADIQSERLEAEKEIARQVDNLNTSLAQIQDLNG 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I+ + A+ +D    +DQR VL+ +I+ I+ +S + R+   + + T  G  L +    +I
Sbjct: 181 DIRLQIAAGNDPLGLMDQRQVLIDQIATIVPVSVVDRDFGQVALITESGGVLLDGTAAEI 240

Query: 236 NF------EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +F          +               V S++  + +  G + AL +IRD +    Q  
Sbjct: 241 SFRDVGLITPDMTVASGGLYQVEINGSPVDSTSPNNPLKGGSLDALFEIRDELAVSAQGD 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +D +AR LI  F         S   PGLF   G           +     +    R +P+
Sbjct: 301 VDAVARDLIERFQNSAIDPTLSAGEPGLFTDAGALVDPANE---VGLAGRIELNARVDPA 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              +   V            G   +I    D+ ++  +    +  +   T    A + + 
Sbjct: 358 KGGEVWRVRTGLGATSPGDPGAGGIILALSDALSEPKVVASGSFSSIPRTAAALASDLLS 417

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +   R  S +    +   +  +        GV+   EL  L+ +E +Y  + ++I   D
Sbjct: 418 TIGAARQASENEVSYTAAKWETLRSLELEG-GVDTDAELQKLLMIETAYAANARVIQTVD 476

Query: 470 KMLQTLL 476
           +ML  LL
Sbjct: 477 EMLDLLL 483


>gi|319790356|ref|YP_004151989.1| flagellar hook-associated protein FlgK [Thermovibrio ammonificans
           HB-1]
 gi|317114858|gb|ADU97348.1| flagellar hook-associated protein FlgK [Thermovibrio ammonificans
           HB-1]
          Length = 449

 Score =  206 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 171/480 (35%), Gaps = 35/480 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           M+L    + A     +      +  RN+ N +   Y R + +        VTV T R   
Sbjct: 1   MALFGALSLASQALLSQQIAVNTTNRNLSNVNTDGYSREEPVFADIPGGGVTVATLRRVF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            ++  K   + +      +      +  E +  +D   +  +  I+     +   + N +
Sbjct: 61  SSVLFKRFISENQNNAYLKAKSEVLSQVESLF-NDQMGSGLSQAINDFFSVMNDVAVNPA 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    + ++  A+ +V     S   +Q+I++   K++   +SNL + L +L  +N  I  
Sbjct: 120 DLAARQELLSKAQVLVGRIRDSYSALQEIKSTYSKQVAESVSNLNQLLEKLADINRNIPL 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S    + +LD+RD  +++IS II       ++  + +YT+ G  L       +  ++
Sbjct: 180 FADSPDRLNQYLDERDRTIKEISSIIDAKVQFNSDGTVNLYTAKGFAL-------VLGDR 232

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
               TV +  + + +       +  S +  G +  L+   + VV     +L+ +   +  
Sbjct: 233 TFKVTVKNTDSGVKVLADGR--DITSDLSGGSVGGLVSALN-VVESAMERLNTLTSTIAN 289

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             + +     N     G+ +                          ++   L        
Sbjct: 290 EVNAQHEQGYNLYGETGIDLFASDNGQP----------------IDASNIVLAFNDPKKF 333

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDS 418
               +   L      +       +K +           ++  EY       W+ +    +
Sbjct: 334 AAASDPNYLDSDNGNVKALMALADKTYTQL------NGLSFAEYYGTQITSWIGQEVESN 387

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +L   S    + I +      GVN  EEL  L + +++Y  + +++  TD++LQT+L  
Sbjct: 388 DNLLKNSDFQLDAIKQKVEELSGVNTDEELVNLTRYQRAYQAAARVVTVTDELLQTILNM 447


>gi|13472593|ref|NP_104160.1| flagellar hook-associated protein FlgK [Mesorhizobium loti
           MAFF303099]
 gi|14023339|dbj|BAB49946.1| flagellar hook-associated protein 1; FlgK [Mesorhizobium loti
           MAFF303099]
          Length = 484

 Score =  206 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 161/483 (33%), Positives = 249/483 (51%), Gaps = 4/483 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  + AQ+   + ++Q + + RN+ +A N +Y RR  + T +      V  +    
Sbjct: 1   MSLSSALSIAQSALMSTARQTSVVTRNVSDASNPDYARRIAVVTSTAPGARSVDIQRVAN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           ++  +      SA   Q  L S     ++        +SP+  I+ L+ +L+ Y+ + S 
Sbjct: 61  DLLFRQNLGALSAYSGQNALYSGMDQLDVSVNGVDNASSPSTAIANLQQALQLYATSPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +VID A++VV++ N  ++ +Q  R   D +I+  + +L   L +    N A+   
Sbjct: 121 QNLGSSVIDAAKQVVRSLNEGSKAIQDFRTQTDGQIDTAVKDLNSLLGQFQDANQAVISG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T S  D  D LDQRD LL+KI++ I IST  R +NDMV+ T DGTTLFET+PR ++F   
Sbjct: 181 TRSGTDVSDALDQRDALLKKIADYIPISTFTRGDNDMVITTGDGTTLFETIPRTVSFTPA 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             Y   +  N I+ID V VS+   G+    GK+  LLQ+RD V    Q+QLDE AR LI 
Sbjct: 241 AGYAAGAPGNTIYIDNVPVSAGSGGNTTASGKLAGLLQLRDGVASTMQSQLDETARGLIT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +F+E  P   N+  +     A  +     L N L   IS    ++P    NP+ LRDGG+
Sbjct: 301 AFAETAPAMPNAAGLFTWSGAPAVPAAGTLVNGLAGTISINAAMDPSAGGNPTLLRDGGA 360

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
               ++ N      Y  L+  Y D  +K   FDP AGI+   ++ +YA NSIGWL+  R 
Sbjct: 361 NGAAYVANTTGGPSYSSLLIAYGDRLDKPMTFDPAAGISATSSVSDYAANSIGWLQSMRQ 420

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +       + +    SE+ SN  GVN+ +E+S ++ +E +Y  S +++   D ML  LL
Sbjct: 421 QASTAADAKEALAQRSSEALSNATGVNVDQEMSLMLDLEHTYQASARMMKTVDDMLTALL 480

Query: 477 EGV 479
             V
Sbjct: 481 NAV 483


>gi|89067518|ref|ZP_01155031.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
 gi|89047087|gb|EAR53141.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
          Length = 478

 Score =  206 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 171/485 (35%), Gaps = 14/485 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-TMTTISPENVTVVTQRSEN 59
           MS+      A +    AS++   +  NI NA  + Y RR   +++     V         
Sbjct: 1   MSIATSIGSALSGLEVASRRAEIVSGNIANALTEGYGRRSLAVSSTMLGGVRADGVIRHA 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                    +  + +             + +  +     + +  ++ +  +L S + + S
Sbjct: 61  DRGIAADRRSAEADMEANAAQSDILDRLQRLFGEPGEPGALSSRLTAVEQALVSAAADPS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            DI    V D    +    N +   +Q++R +AD+ I  ++++L R L  +  +N  I  
Sbjct: 121 SDIRLGHVADRLTALTGALNHAGDSLQEMRTEADRSIATQVASLNRQLERVETLNGEITS 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             A   D    LD+R   +  IS ++ +  IVR N+ + + T  G TL +   R+I F  
Sbjct: 181 LRARGVDVSPLLDERQKAVDGISALVPVREIVRENDAIALMTLSGATLLDGKAREIGFSP 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVP------KGKIKALLQIRDSVVPIFQNQLDEM 293
           +N  T         + G+ ++ +  +          G++ +   IRD+++P     LD  
Sbjct: 241 VNLVTADMTHASGALSGLTIAGDPVTGSTAYGKLGGGRLGSTFDIRDTILPDVSTGLDAF 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           AR L   F++       +   PGL    G            S           N   L  
Sbjct: 301 ARDLADRFADPATDPTLAAGAPGLLTDAGAALDPLDTPGLASRIALNPTVDPGNGGSLAR 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    I  + D+   +   D      +  +   +  + +  +  
Sbjct: 361 LRD---GLGETSSAPVGSSTQIERWLDALQDSRRTD---LGGSAASASGHMASLLADVGS 414

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R             +  +  +     GV+   EL  L+ +EQ+Y  + K++   + +L 
Sbjct: 415 RRYAIEQDLAFETARWEVLKSAELAN-GVDTDRELQELLLIEQAYAANAKVLQTVNSVLT 473

Query: 474 TLLEG 478
            LLE 
Sbjct: 474 RLLEI 478


>gi|325289234|ref|YP_004265415.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964635|gb|ADY55414.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 507

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/505 (15%), Positives = 170/505 (33%), Gaps = 36/505 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
           S  A    A +  + +  Q  +   NI NAD   YVR+  + T                 
Sbjct: 3   SSFAGIATATSGLSVSQSQLNTTGHNISNADTAGYVRQQVVQTDASYLKSGQYQVGTGTR 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           + T R       D++     S +   ++  S     E    D   +      + +   + 
Sbjct: 63  IETIRQIRSVFLDRMYRNEQSTLSYWQIRSSTVESIEAAMNDLADDGGVQTALDEFFAAW 122

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E   K+        +++  A  +V+ FN    ++ +I+ + D++I   + ++     ++ 
Sbjct: 123 EEVGKDPESSSARASLLGYAGSLVELFNQLETQLDQIQTNLDEQIVSMVEDINTIAGQVA 182

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I     +   A+D+ D+ + LL  +S+ + I+    +N    V     + +  T 
Sbjct: 183 ALNKIIARCEVNGDRANDYRDEVNSLLDTLSQYVKINVTTDSNGMYNVSVGGVSLVNGTS 242

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF--QNQ 289
             +++          + +N  F      +S     +  G + +L++ R  V         
Sbjct: 243 VSELSC-------AANLANGSFHTVFWANSGLEPDLKSGMLLSLMEARGDVDGSAGSAGN 295

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--N 347
              +         + D    +        IA+    L+  +     +   ++        
Sbjct: 296 GSPLESGAEEEDVDADAAVYDFTGESENLIAELRSGLNIMVSLLTRKINALHSGGEGLDG 355

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------- 394
            + +     + +   + + N+   P L      + +     +  A               
Sbjct: 356 STGIDFFVKIDEDLPFEIGNIQVNPQLEETDLIAASSIGGGNDGAVAAEIAAFAETEYFH 415

Query: 395 --NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                +T+  Y     GWL     ++       + +      S  +   V++ EEL+ L+
Sbjct: 416 CDGLAMTISAYYSELAGWLGTEGEEAESAAANQETLVEQAESSRESLSAVSMDEELANLL 475

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLE 477
           K + +YN S +++   D ML  L+E
Sbjct: 476 KYQHAYNASARVMSMIDGMLGRLIE 500


>gi|157373201|ref|YP_001471801.1| flagellar hook-associated protein FlgK [Shewanella sediminis
           HAW-EB3]
 gi|157315575|gb|ABV34673.1| flagellar hook-associated protein FlgK [Shewanella sediminis
           HAW-EB3]
          Length = 457

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 160/486 (32%), Gaps = 36/486 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53
           MS+    N   +  N +     +   N+ NA    Y R+  M +            V V 
Sbjct: 1   MSM---LNIGMSGLNASMAALNTTSNNVANAMVPGYSRQQVMMSSVGSGTYGGGAGVMVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +S +G  ++  S+    E +       N+ +  +  L  SL S
Sbjct: 58  GVRRISDQYEVAQLWNTTSDVGFSKVQASYYGQVEQIFG--SDGNNISQGLDLLFASLNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +E    + V++ A  +   FN+ +  V    +  + ++   +  +   L  +   
Sbjct: 116 AMEQPNEIAYRQGVLNEARALTHRFNSISEGVNAQLSQIEGQLGASVKEVNAQLQTIASF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+    + +     LD RD  +  ++ I+ I+ +  +N  + +  + G  L      
Sbjct: 176 NAEIQASGNNGNVPSSLLDARDAAVDDLAAIVDINVVEDSNGMLNISLAQGQPLLAGTTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +          I         ++ +    G + ALL  RD+ +      +DE+
Sbjct: 236 STLSVSPDPGNPGMSKISIQFGQSSFPVDESA---GGSLGALLDYRDNSLMDSIAFIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  +   F+       +                       ++                  
Sbjct: 293 AMTIADEFNAVLAGGTDLNGNTPTQDLFTYDPNSPAGSLKLTSGFTAEMLAFGQ------ 346

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    +    +  NK+F F+    I  + T+ +   + IG L  
Sbjct: 347 ------------DGTPGDNSNLKELVELANKSFTFNS---IGADTTMGDAFASKIGELGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      S  +       +++T GVN+ EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAQVNADTSVKLQMEAQSQWASTSGVNMDEEAVNLIIYQQSYQANAKVISTADQLFQ 451

Query: 474 TLLEGV 479
           T+L  +
Sbjct: 452 TILNSI 457


>gi|90577350|ref|ZP_01233161.1| putative flagellar hook-associated protein [Vibrio angustum S14]
 gi|90440436|gb|EAS65616.1| putative flagellar hook-associated protein [Vibrio angustum S14]
          Length = 455

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/483 (14%), Positives = 155/483 (32%), Gaps = 37/483 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVTQR 56
            + N      N           NI N +   + R+  M           +   V + + R
Sbjct: 2   NMINIGLTGLNANKTALDVTAHNIANVNTPGFSRQQAMMNALAGNDILSAGSGVEIASIR 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +     K   A +S             + E +   + +N   +  +  L  +L   + 
Sbjct: 62  RISDQFIVKQTWAATSQQAASNANLDNMTMLESLLGGEGFN--ISAGLDSLYSALNDATL 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                   + +I+ A+ + + FNT +  +         +    I +    ++ +  +N  
Sbjct: 120 KPESTPNRQQIINEAKALSRRFNTLSESLHGQGKRIGDKATASIEHANSLMNNIADINHR 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +    A+  +    +D+RDVL++++SE++ IS+  + +  + V  + G  L         
Sbjct: 180 VVETQATGGNPSQLIDERDVLIKQLSEVVEISSTQQPDGSLQVTLASGQPLILGSDAAQL 239

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                      ++  I   G   +    +    G++ A        +   Q  LDEMA+ 
Sbjct: 240 KSTPIVNEPFIKNIDIDFSGQTFAV---TGELGGQLGAFDNYLKDTLKPTQQVLDEMAQN 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L   F++      +     G  +     +                         L     
Sbjct: 297 LATEFNQVLATGFDLNGNRGQALFSFDPNSPAAS--------------------LDITAI 336

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +     G  D +    D   K      +     +VTL +   + +G       
Sbjct: 337 TPAELALSSDRTPGNSDTLQALIDLSTKPMAITGL----GSVTLNDAFASMVGKTAIETR 392

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ +F+  + +  N   VN  EE + L+    +Y  + K+I   +++  ++L
Sbjct: 393 QAAVDQKAAETLFSQANAARDNLSAVNSDEEAANLMTFTNAYQANMKVISTANELFDSVL 452

Query: 477 EGV 479
             +
Sbjct: 453 RLL 455


>gi|170748124|ref|YP_001754384.1| flagellar hook-associated protein FlgK [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654646|gb|ACB23701.1| flagellar hook-associated protein FlgK [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 134/486 (27%), Positives = 229/486 (47%), Gaps = 7/486 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L    N A+      + Q   + RN+  A + +Y R+      +   V VV  R+ + 
Sbjct: 1   MGLSVALNAARGSLQANAIQTDVVSRNVAGAYDPSYSRKIASVITTDGPVRVVINRASST 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +FD+++ + S   G Q +L    +L++ +  D     S    +  L  +L   +   ++
Sbjct: 61  ALFDRMMGSTSELAGYQAVLDGLTSLEDTV-GDTDAGRSIAAKVGALNIALGDAAGEPND 119

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L K  +  A ++ +  N ++ ++Q  R +AD EI   ++ +   L +    N A+   
Sbjct: 120 INLAKAAVAAARDLARALNQASSKIQATRLNADHEIRTSVTTINDLLRKFDAANSAVVLG 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D LD RD +L ++S+ IGISTIVR NNDM +Y  +G+ LFE  PR + FE  
Sbjct: 180 TVRGEDISDALDNRDKILAQLSQEIGISTIVRENNDMAIYADNGSPLFERGPRTVTFEST 239

Query: 241 NSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++   +    +F+DGV V+       +  G+I   + +RD +   +Q QLD +A  LI 
Sbjct: 240 AAFVPGTAGKAVFVDGVQVTGHGSVMPLQTGRIVGQMTVRDDLTVTYQKQLDAIAGGLIA 299

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI----CVNPQYRSNPSFLRDGG 355
           + +E D  +     + GL    G   L      G++ TI      +P+   NP  LRDGG
Sbjct: 300 ALAETDSTSLGGTPLAGLLTYPGGPALPAAGTVGLAGTIRVNPAADPEQGGNPFTLRDGG 359

Query: 356 -SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +   ++ +N  N A + + +     +      F P + +    TL   A  S  WLE  
Sbjct: 360 MNAGPQYAYNTTNAAAFAEHLRALRAALGAERTFLPDSELPHAATLQVAAETSASWLEAT 419

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           R  +     +   + +  S + SN  GVN  +E++ ++++E+SY  S KLI   + MLQ+
Sbjct: 420 RQGASKQVDRESALLDSASTALSNATGVNRDDEVATMLQLEKSYAASAKLIATVNAMLQS 479

Query: 475 LLEGVK 480
           LL+ V+
Sbjct: 480 LLDAVR 485


>gi|145297460|ref|YP_001140301.1| lateral flagellar hook-associated protein [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850232|gb|ABO88553.1| lateral flagellar hook-associated protein [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 439

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/486 (12%), Positives = 149/486 (30%), Gaps = 56/486 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52
           MS+    N   +  N A        +NI N +   Y R++ M           +   V V
Sbjct: 1   MSM---LNIGLSGLNAAQIALNVTAQNIANVNTIGYSRQEAMMGSLSGFGRLDNGMGVEV 57

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +          S+ G       +    E +   +  N      +     SL 
Sbjct: 58  TGVRRITDDYLVSQHWRSRSSTGASYSFHQYINTTEQLLGSESMN--IAKGLDSFFASLS 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   +         ++ +A  +   F      +       D ++   +S +  +L ++  
Sbjct: 116 AALDSPETPAQRSQIVSSAGALANRFGQLNESMLTQEKQIDDQLNSTVSQVNSYLKQVAE 175

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I  + +   +     D R+ +++++S  + +    +++    +    G  L     
Sbjct: 176 LNTQISEQASKGVNTSVLEDSREQIVRELSTFMEVRVNRQSDGSFSLSLPQGQPLVLAGS 235

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +S +++              S     +  G +  +++ R +V+   +++L++
Sbjct: 236 SSTLSLAGDSLSLS----------FGPQSFDVPKLHGGSLAGVIEYRTTVLRPLRDELNQ 285

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A+ L   F+ K     +    PG  +        +                      + 
Sbjct: 286 IAKKLADDFNAKQSGGVDLHGNPGKSLFTYDPLNPSGTL------------------KIA 327

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           DG +            +G    +       +  +               +     +G + 
Sbjct: 328 DGFTGDDLAFAKAGGGSGDNRNLQELLTIKDSQY---------------DAYSALLGRMA 372

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +         +   ++   S+  GVN  EE   ++   ++Y  + K+I  +D++ 
Sbjct: 373 VQSGQAKATMEADANMEKQLATKLSSVSGVNTDEEGVKIMAYTKAYQANAKVISTSDQLF 432

Query: 473 QTLLEG 478
            ++L  
Sbjct: 433 NSILNM 438


>gi|110632639|ref|YP_672847.1| flagellar hook-associated protein FlgK [Mesorhizobium sp. BNC1]
 gi|110283623|gb|ABG61682.1| flagellar hook-associated protein FlgK [Chelativorans sp. BNC1]
          Length = 487

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 245/487 (50%), Gaps = 7/487 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+   N S+Q + + RNI  A N +Y RR      +     +   R    
Sbjct: 1   MSLTSALNIAQSALFNTSRQTSIVSRNISEASNPDYARRAASLVSTNSGAQIGDIRRATD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +  +   A  S+   Q  L       ++        +SP   +SKLR++L++Y+   S 
Sbjct: 61  EVLFRQNLAAQSSWNGQSFLSRGLDRLQINVNGVDNASSPATALSKLREALQTYAATPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  ++ A ++V + N+    +Q  R D D+EI   + +L R L+E   VN  I   
Sbjct: 121 RTLAENAVEAARQMVLSLNSGTAAIQSFRTDIDQEISASVDDLNRLLAEFETVNTQIVSG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T +  D  D LD+RD LL++IS  + +STI R NNDMV+ T+ G TLFETVPR ++F   
Sbjct: 181 TRTGRDVSDMLDRRDALLKQISAYLPVSTITRANNDMVLTTTGGVTLFETVPRPVSFTAN 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
           N+Y   +  N +++DGV +S   G       G + A LQ+RD +    Q QLDE+AR L+
Sbjct: 241 NAYAAGTLGNAVYVDGVPLSPGAGGGNTTASGSLAANLQLRDEIAVQMQRQLDEIARGLV 300

Query: 299 GSFSEKDPIAGNSE-----NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
             F+E DP    S+       PG         L + L   IS    ++ +   +P  LRD
Sbjct: 301 SVFAESDPSGTLSDAAGLFTWPGGPALPADGILVDGLAGRISVNPAMDSRAGGDPELLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           GG+    +L N    A Y  L+N + +      +FDP  G+ ++ +L  ++  +IGWLE 
Sbjct: 361 GGANGTAYLHNTTGAASYSGLLNSFVERLETPQLFDPATGLGSSQSLFSFSVETIGWLEG 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R  S       + + +H + + +NT GVN+ EE++ L+++E SY  S +L+   D+ML 
Sbjct: 421 LRQQSASGMAAKEALASHTATALANTTGVNIDEEMALLLELEHSYQASARLMSVIDEMLA 480

Query: 474 TLLEGVK 480
            L+E  +
Sbjct: 481 NLMEVAR 487


>gi|27381968|ref|NP_773497.1| flagellar hook-associated protein FlgK [Bradyrhizobium japonicum
           USDA 110]
 gi|27355138|dbj|BAC52122.1| flgK [Bradyrhizobium japonicum USDA 110]
          Length = 491

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/489 (29%), Positives = 243/489 (49%), Gaps = 10/489 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSE- 58
           MSL A  + A+     +  Q ++I RNI  A    Y R+  +        V V + +   
Sbjct: 1   MSLTAALDSARASLMASGIQSSTISRNIAGASAAGYSRKIAVLDNLPGAGVYVASIQRAA 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +  +++ VL A SS+  Q  +    + +      D   + SPT  ++ L+ +L+ Y+   
Sbjct: 61  SSGLYNNVLTATSSSAKQGAIYDGLQKIASATVDDTELDQSPTAQLNALKKALQQYANAP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               L +  I +A+++    N +   VQ +R  AD ++   ++N+ + L++   VN+A+ 
Sbjct: 121 DNTTLAQAAITSAKDMATALNQATNTVQSVREGADADMATSVANINQLLTQFDKVNNAVV 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +  D  D+LDQRD ++ K+S+ +G+S  +R N D  +YT  G  LF+   R ++F 
Sbjct: 181 RGTIAGDDVTDYLDQRDSIVSKLSQEVGVSMSIRANGDAALYTDSGVVLFDKTARTVSFT 240

Query: 239 KMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
             N YT  +  N ++IDGV V+  N    +  GK+  L Q+RD     +Q+QLDE+AR L
Sbjct: 241 ATNIYTAGTTGNAVYIDGVPVTGANSVMPLKSGKLAGLAQLRDQDSVTYQSQLDEIARGL 300

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------ISETICVNPQYRSNPSFL 351
           I +F E D  A    +VPGLF   G   +             IS    V+P    NP+ L
Sbjct: 301 INTFRESDQTAAALPDVPGLFTYPGAPAIPASATVSVGLAGLISVAASVDPAQGGNPNLL 360

Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           RDG  S +  + +N    AGY   +       + +  FD       + +L+++A +S  W
Sbjct: 361 RDGAISGNVAYRYNTAGNAGYSARLQQLIGGMDASQPFDVTTQGKPSGSLIDFASSSTSW 420

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +E  R  +       + + +  + + SN  GVN+ +E+S +++VE++Y+ S+K+I   D+
Sbjct: 421 IENQRKTADSNVTYQKTLLDRSTAALSNVSGVNMDDEMSLMLQVERTYSASSKIISTVDQ 480

Query: 471 MLQTLLEGV 479
           MLQ+LL  V
Sbjct: 481 MLQSLLAAV 489


>gi|149189842|ref|ZP_01868122.1| putative flagellar hook-associated protein [Vibrio shilonii AK1]
 gi|148836328|gb|EDL53285.1| putative flagellar hook-associated protein [Vibrio shilonii AK1]
          Length = 457

 Score =  204 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/481 (15%), Positives = 152/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGMNANRVALDVTAQNVANINTPGYSRQQAVMASLAGGKYDKTNPGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +SA        S  +  E M        S +  +  L  +L   +  
Sbjct: 65  VTDQYLVKQTWSTASAANYASGYTSAMSQLENMLG--ADGFSLSAGLDSLFAALNDATTK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                L + VI+ +E + + FNT    +     D   +    IS+    +S +  VN  I
Sbjct: 123 PESTPLRQQVINESEALARRFNTLTESLHNQHKDVHDQRNAAISHANSLMSNIAEVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RD L+ ++S+++ + T  + +  + V  + G  L       +  
Sbjct: 183 VEMQGTGGNPAQLMDTRDALVGELSKVMEVKTTDQADGSIQVSLASGQPLVMGSDASVIK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          I       ++        GK+ +L   +  V+  +Q+ +D+MAR L
Sbjct: 243 AIPDPSDPYLADIHIEFGNQTFAAKGD---LGGKLGSLHDYQVDVLKPYQDAIDDMARSL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               +       +     G  +                               L      
Sbjct: 300 ADEVNAVLAAGQDLNGNAGKALFSYDPANPAAS--------------------LTITDIK 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S +  ++     G  D +       NK            +++L +     +G        
Sbjct: 340 SDELAFSSDGNPGNSDNLKDLIAISNKPVTI----TGFGSLSLNDAFTAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +   Q +F     +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADSDYQAKQSMFEQSVAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|254973892|ref|ZP_05270364.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-66c26]
 gi|255091277|ref|ZP_05320755.1| putative flagellar hook-associated protein [Clostridium difficile
           CIP 107932]
 gi|255312936|ref|ZP_05354519.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-76w55]
 gi|255515695|ref|ZP_05383371.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-97b34]
 gi|255648789|ref|ZP_05395691.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-37x79]
 gi|260682009|ref|YP_003213294.1| putative flagellar hook-associated protein [Clostridium difficile
           CD196]
 gi|260685607|ref|YP_003216740.1| putative flagellar hook-associated protein [Clostridium difficile
           R20291]
 gi|260208172|emb|CBA60493.1| putative flagellar hook-associated protein [Clostridium difficile
           CD196]
 gi|260211623|emb|CBE01861.1| putative flagellar hook-associated protein [Clostridium difficile
           R20291]
          Length = 436

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 80/495 (16%), Positives = 171/495 (34%), Gaps = 79/495 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++ N A +  N   +   +I  NI N D   Y R+ T    +               
Sbjct: 3   GLFSILNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIARG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V        + +D    A +   G       +    E +  ++  +   +  I
Sbjct: 63  QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYYNTIETI-INEPSDYGISAGI 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                  ES +K+++ D     V++NA  +    + S +++ K++ D D  I  EI  + 
Sbjct: 122 DDFFKGWESLAKDINSDSKKSLVVENASNLATLISESYKKLNKLKGDIDDNINSEIKQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L  L  +N +I   + S    +D LD+RD +L  +S  + +      N          
Sbjct: 182 DMLKSLEDLNKSIDVISGSGSTPNDLLDERDRILDDLSFKLDLENSDVKNMLSD------ 235

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                                      + ++ +  +         G ++ L ++    + 
Sbjct: 236 -------------------------GKLELNELKNADGTWKTGVSGTLQGLFEMH-GKID 269

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            +++ L +++  L    ++    +              + D          + I VNP  
Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNTSAGIT----------VTDFFITSNVDGEDIIKVNPAI 319

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +SNP+ L+     + K                    +  K+   D         T+ ++ 
Sbjct: 320 KSNPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +     +  +    +   +  + + N+I  S  +  GV+L EE++ LIK+++SY  S K+
Sbjct: 361 KAFAESVGLDSQKVNQDEVNQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKV 420

Query: 465 IMFTDKMLQTLLEGV 479
           +    ++L  ++ G+
Sbjct: 421 MSTAVQLLDVVINGI 435


>gi|319781664|ref|YP_004141140.1| flagellar hook-associated protein FlgK [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167552|gb|ADV11090.1| flagellar hook-associated protein FlgK [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 484

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 155/483 (32%), Positives = 243/483 (50%), Gaps = 4/483 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    + AQ+   N ++Q + + RN+ +A N +Y RR  + T +      V  +    
Sbjct: 1   MSLSTALSIAQSALMNTARQTSVVSRNVADASNPDYSRRQAVVTSTAPGARSVDIQRAAN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +  +   A  SA   Q  L +      +        +SP+  I+ L+ +L+ Y+ + S 
Sbjct: 61  ELLFRQNLAALSAWSGQNALYNGMDQLGVAVNGVDNASSPSTAIANLQQALQLYATSPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +VID A++V+++ N  ++ VQ  R   D +I   + +L   L +    N A+   
Sbjct: 121 QNLGASVIDAAKQVMRSLNEGSKAVQDFRTQTDGQIATAVDDLNSLLGQFQDANTAVMSG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T S  D  D LDQRD LL+KIS  + +ST  R +NDMV+ T DGTTLFET+PR + F   
Sbjct: 181 TRSGTDVSDALDQRDALLKKISNYVPVSTFTRGDNDMVITTGDGTTLFETIPRTVTFAAS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             YT  +  N ++ID V +S+   G+    G +  LLQ+RD V    Q+QLDE AR LI 
Sbjct: 241 AGYTAGAAGNAVYIDNVPISAGAGGNTSASGTLAGLLQLRDGVASTMQSQLDETARGLIT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +F+E  P   N+  +     A  +       N L   IS    ++P    NP  LRDGG+
Sbjct: 301 AFAETAPSMANAAGLFTWSGAPAVPAAGTLVNGLAASISVNAAMDPSTGGNPMLLRDGGA 360

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
               ++ N    A Y  L+  Y D  ++   FDP AG++   ++ +YA +SIGW E  R 
Sbjct: 361 NGAAYVANTGGGASYSTLLVAYGDRLDQPMTFDPAAGVSATSSVSDYAASSIGWFEGVRQ 420

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +       + + +  +E+ SN  GVN+ +E+S L+ +E +Y  S +++   D M+  LL
Sbjct: 421 QASTASDAKEALASRSAEALSNATGVNVDQEMSLLLDLEHTYQASARMMKTVDDMMTALL 480

Query: 477 EGV 479
             V
Sbjct: 481 NAV 483


>gi|315122285|ref|YP_004062774.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495687|gb|ADR52286.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 481

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 334/481 (69%), Positives = 397/481 (82%), Gaps = 1/481 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL AVFNKAQNI +NAS+QF +IV+NIEN+ NKNYVR+D +T  + +    V QRSEN+
Sbjct: 1   MSLSAVFNKAQNIFSNASEQFFTIVKNIENSGNKNYVRQDIITVNTGDMTVAVKQRSENQ 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           NMF+K+L A SSAIGQQRLL+SFE+LK++M A++ YNNSP+HY++KLRDSL  YS N S 
Sbjct: 61  NMFEKLLDAKSSAIGQQRLLESFESLKDIMGAENKYNNSPSHYMAKLRDSLSVYSNNPST 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           DI GK +I +A  +V N NTS++E+QKIRA ADKEI++E+S LR FLSELTVVND IKFK
Sbjct: 121 DIFGKQIISDANALVYNLNTSSKEIQKIRAGADKEIDIEVSKLRGFLSELTVVNDQIKFK 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T +KHD H+ LD+RD LLQ ISE IGISTI+RNNND+++YTSDGTTLFETVPR+INFEKM
Sbjct: 181 TVAKHDTHELLDKRDALLQNISEEIGISTIIRNNNDIIIYTSDGTTLFETVPRNINFEKM 240

Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + Y+ TSES  + IDGV VS  +Q    PKG+IKALL IRD+V+P+FQNQLDE++R LI 
Sbjct: 241 DLYSATSESKSVVIDGVKVSIPDQTHTAPKGRIKALLHIRDNVIPMFQNQLDEISRSLIS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            FSEKDP+AG S++V GLFIADG+KD  NKL +G+SE I VNPQY+SNP FLRDGGSVSK
Sbjct: 301 GFSEKDPVAGRSQDVLGLFIADGLKDPGNKLYKGMSEIIRVNPQYQSNPFFLRDGGSVSK 360

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             LWNVK  A Y  LINHYCDSFN  F FD   GI TNV+LLEYA+NSIGWLEKNRS SH
Sbjct: 361 NHLWNVKGFAEYSGLINHYCDSFNAMFSFDSATGIGTNVSLLEYAKNSIGWLEKNRSTSH 420

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           D  MK+QVVFNHISESYSNT GVNLQ+ELSFLIKVEQSYNISNKL+M  ++ML TLLEG+
Sbjct: 421 DSRMKNQVVFNHISESYSNTTGVNLQDELSFLIKVEQSYNISNKLMMSINRMLNTLLEGI 480

Query: 480 K 480
           K
Sbjct: 481 K 481


>gi|83595981|gb|ABC25341.1| flagellar hook associated protein [uncultured marine bacterium
           Ant24C4]
          Length = 478

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 85/485 (17%), Positives = 176/485 (36%), Gaps = 14/485 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           M++ + FN A    + +++    +  N+ N+  + Y RR+   +      V +       
Sbjct: 1   MTISSAFNNATGGLSASARMAEVVSSNLSNSLTEGYGRREVNLSSGLLGGVVLDGISRVV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +      + +G ++      +  E         +     ++ L  SL S S   S
Sbjct: 61  DPGILRDRRTADADVGSKQRGAQVLSQLEQAFGPVGDPSGVVGRLAALEQSLISASSRPS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            D     V    E V    ++    +Q  R DADK I  ++  L   L ++  +N  +  
Sbjct: 121 SDQRLNIVFSGLEGVTTALHSDDDAIQIQRQDADKAITADVKTLNSTLLQIEKLNADVSR 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S +D     D R   + +++ I+ ++ I R    + +YT  G  L +  P    F  
Sbjct: 181 LIGSGNDPSPVFDARQNAIDRLTSIVPLTEINRGRGQVALYTRSGVALIDGAPATFGFAH 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQ------GSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
             +           + GV ++            +  G ++A   +RD  +   Q  LD++
Sbjct: 241 TGTIVAEMTLVLGALSGVTLNGEPLDLANGYGRMKGGSLEAAFTLRDQTLVGLQANLDKV 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  L+  F         +   PGLF+       D     G+S  I VN     +P     
Sbjct: 301 AADLVKRFERPVTDPTLTLGDPGLFLD-HNGAFDPLNIDGLSSRITVNTSV--DPREGGA 357

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
              +            G    +  +  + +       ++      + +E+  + +  + +
Sbjct: 358 LSRLRHGVNATASGPTGDNSQLQRWLSALDDP---IALSVGGMARSAIEHGSDQVATVGR 414

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R ++ +        ++ +  +  +  GV+  +EL  L+++EQSY  + ++I   D M+ 
Sbjct: 415 LRLNAEESLGFEIARYDSLKSAELSG-GVDSDQELQRLLRIEQSYAANARVIQTLDAMMS 473

Query: 474 TLLEG 478
            LL+ 
Sbjct: 474 RLLDI 478


>gi|115523194|ref|YP_780105.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           BisA53]
 gi|115517141|gb|ABJ05125.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 153/490 (31%), Positives = 251/490 (51%), Gaps = 10/490 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           M+L    N A++       Q +++ RNI  AD   Y R++ +        + V   +   
Sbjct: 1   MTLTVALNSARSSLMATGTQASAVSRNIAGADQDGYSRKNALLATMPGSGIYVSGIQRAT 60

Query: 60  KN-MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
              +F+ VL A S++  Q  +    + +      D   + SPT  ++KL+ +L+ Y+   
Sbjct: 61  SAGLFNNVLKAVSTSAQQDTIFNGLQKIAAATVDDPELDQSPTAQLAKLKTALQQYATAP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               L +  +  A+ V  + N + + VQ +RADAD ++   ++ + + L++   VN  I 
Sbjct: 121 DNVTLAQAAVTAAKGVAASLNDATKTVQAVRADADSDLSTSVTTINQLLAQFETVNTTIV 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +K D  D+LD RD +L K+S+ +G++   R NNDMVVYT  G TLFE   R + F 
Sbjct: 181 KGTMAKADVTDYLDLRDSILSKLSQEVGVTVATRANNDMVVYTDSGVTLFERSARSVTFV 240

Query: 239 KMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
             N Y+  +  N ++IDGV V  ++    V  GKI  L  +RD     +QNQLDE+AR L
Sbjct: 241 PTNGYSAATVGNAVYIDGVPVIGASAVMPVHSGKIAGLAALRDDATVTYQNQLDEIARGL 300

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ------GISETICVNPQYRSNPSFL 351
           I +F+E D  A +  +V GLF   G   +             I+ +  V+     NPS L
Sbjct: 301 IETFAESDQTASSLPDVAGLFTYPGAPAIPASGTISAGLAGTIAVSASVDQSVGGNPSLL 360

Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           RDGG S    +++N    AG+ + +    D    +  FDP A    +  L+++A +S+ W
Sbjct: 361 RDGGISGGAAYVYNTTGAAGFSNRLQQLVDGVATSRPFDPAALAKPDANLIDFAGSSVSW 420

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           LE  R  + +    SQ +    +E+ SN  GVN+++E+SF+++VE++++ S+KLI   D 
Sbjct: 421 LESQRKTASEQSTYSQTLLERSAEALSNVNGVNMEDEMSFMLQVERTFSASSKLIATVDA 480

Query: 471 MLQTLLEGVK 480
           ML+ LL  V+
Sbjct: 481 MLKELLAAVR 490


>gi|304321121|ref|YP_003854764.1| flagellar hook-associated protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300023|gb|ADM09622.1| flagellar hook-associated protein [Parvularcula bermudensis
           HTCC2503]
          Length = 481

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 92/489 (18%), Positives = 184/489 (37%), Gaps = 20/489 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55
           MS  +  + A +    AS +  +   NI NA  + Y RRD + +      +   V+VV  
Sbjct: 1   MSFSSALSIANSGLAAASIRAQTTASNIANATVEGYSRRDVVLSERVVGSTGIGVSVVGT 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 +         +A                +  +    N      ++   SL   +
Sbjct: 61  ERVTSPVLTSTRIRLEAADSFATQTADTAKSLTQIVGEPGAQNGLFGAYNRFEASLRDAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                 I    V D+A+ +++ F  ++++   +R DAD+EI   ++ +   L  L  +N 
Sbjct: 121 ATPESSIFQAEVADSAQNLIRVFANASQDANDLRRDADQEIGRLVNEVNEKLERLEDING 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                      + + LD+R  L+ +I+EII ++   R     ++    G  L +T  R+I
Sbjct: 181 L-----PEARISPEILDERQKLVDEINEIIPVTAQNRGGQLKLIS-EGGQFLLDTTAREI 234

Query: 236 NFEKMN----SYTVTSESNPIFIDGVVVSSNQGSAV--PKGKIKALLQIRDSVVPIFQNQ 289
           +F        +  + +  + + ++GV ++    +A     G+I AL + RD  VP  Q++
Sbjct: 235 SFSTTGAIGRTAVLGAPLSGLTVNGVDITPTGSAAHKSSGGRIGALFEARDVTVPGLQDK 294

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  L+  F+       +              +        +     +      +P 
Sbjct: 295 LDGLAFDLVSRFAG---DTVDPTIASTDAGLFTDGNTTAPTASYVGIAEALELNAAVDPD 351

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              +   +           +G  D +N   D+F       P  GIN N + ++       
Sbjct: 352 EGGELYRIQAGIGATAPAPSGNGDQLNRLIDAFGAERAAPPALGINGNASAVDLVAEVNA 411

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            + +  +++ D  + +        E     +GV+   EL  L+ +EQ+Y  + ++I   D
Sbjct: 412 AVTEADAEAQDDALYASTRAQLAREEEQAIIGVDTDRELQQLLLIEQAYGANARVIQTID 471

Query: 470 KMLQTLLEG 478
           +ML  L+  
Sbjct: 472 EMLDILMRL 480


>gi|30248328|ref|NP_840398.1| flagella basal body rod protein [Nitrosomonas europaea ATCC 19718]
 gi|30138214|emb|CAD84222.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718]
          Length = 466

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 165/485 (34%), Gaps = 35/485 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +    A     +   NI NA    Y R+  + + S             V + 
Sbjct: 3   NGIMNVGVSGLRAAQVALLTTSHNISNATTPGYNRQQAIQSASTPLANSDGFIGRGVQIT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +               S   Q     +     + + AD       T  +    ++++ 
Sbjct: 63  TVQRIYNQHLVSQSLQAQSQSSQLDSHYNEIKQIDNLLADTTS--GLTPALHNFFNAVQD 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N +     + ++ NAE +   F    + + ++R   + +I   ++ +     ++  +
Sbjct: 121 VASNPASISSRQAMLSNAEALTARFQQMDQRLSEMREGVNSQITGSVTEINSLAQQIAGL 180

Query: 174 NDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           N  I     +A+   A+D LDQRD L++ +S II +  + +NN    V+  +G +L    
Sbjct: 181 NMNIQAVESSANGQPANDLLDQRDALVRDLSRIINVDVVRQNNGHYNVFIGNGQSLVVGS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S         +   G  +       +  G +  LL  R   +   QN  D
Sbjct: 241 SAMTLKAVPSSSDPQRLVVAMDQQGGEI-VLPEHQLQGGSLGGLLAFRSETLDSVQNSFD 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A  +  +F+ +  +  + ++V G    +G                       S+PS  
Sbjct: 300 QLAWGIADTFNTQHQVGFDLQSVAGSNFFEGTDP--------------------SDPSQA 339

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V+      +         + +  ++     +           +        +  +
Sbjct: 340 ARNIRVAISDPAKIAAADNNDGGVTNNINALKLAGLQTENTLQGGTASYQSAYARLVSQV 399

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +        + + N   ++  +  GVNL+EE + L++ +Q +  S+K+I   + +
Sbjct: 400 GNKTRELEVTSKAQESMLNQTDQALQSLSGVNLEEEAANLLRYQQMFQASSKVIEIGNSL 459

Query: 472 LQTLL 476
             +LL
Sbjct: 460 FDSLL 464


>gi|194015655|ref|ZP_03054271.1| flagellar hook-associated protein FlgK [Bacillus pumilus ATCC 7061]
 gi|194013059|gb|EDW22625.1| flagellar hook-associated protein FlgK [Bacillus pumilus ATCC 7061]
          Length = 506

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/500 (14%), Positives = 153/500 (30%), Gaps = 23/500 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+               N+ NA+   Y R+                      
Sbjct: 3   STFMGLETAKRGITAQRAGLYVTSNNVSNANTDGYSRQRVTFKADNPYPVISVYDGKTYG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V T      +  D     H++ +          +  E +  +D  +       
Sbjct: 63  QMGTGVQVGTVERIRDSFLDLQFRDHNNNLSYYSTKSDALSQMEGVM-NDLTDEGLNRAF 121

Query: 105 SKLRDSLESYS--KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
             L  SL+  S  KN         V  +A+ +V  F      +  I+ +   E++    N
Sbjct: 122 DNLWKSLQVLSETKNADTASARTVVKTSAQALVDQFRLLNSSLTTIQKNLKTELDSTAKN 181

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   LS++  VN  I     + +  +D  D RD L+ ++S ++ I      +    +  +
Sbjct: 182 VNTILSQIDEVNKQIAAVEPNGYLPNDLYDTRDALVDQLSSLVDIKVSYNPSGGNALKIA 241

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +GT   + +  +          +T+E + + I     +    S        A  Q++ + 
Sbjct: 242 EGTVNIDIIGANGQSAGTILNGITNEKSELQISYDNTTGLVNSLQFGTTTIAADQLQVNG 301

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                 +               D +A   E                    G S     + 
Sbjct: 302 KVKALVEAYGYMSNGAEKGMYPDMLAELDEVAQVFMDTFNDVHKQGYTLNGTSGQDFFDI 361

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI---NTNVT 399
           +  ++ +            +    +             S            +       T
Sbjct: 362 ENNNDLNKGLAARIKVSDVILASTDNIAASLNQTKGDGSNATKLAGIQDLKVPIGGNTTT 421

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           + +Y +N I  +      +  L   S  + N  +E   +T  V++ EE++ +I+ + +YN
Sbjct: 422 IQDYYQNVIAEMGIQGKKNITLESSSAALVNSANERRMSTSAVSIDEEMTNMIQFQHAYN 481

Query: 460 ISNKLIMFTDKMLQTLLEGV 479
            + +++   D++L  ++ G+
Sbjct: 482 AAARVVTLQDEILDKVINGM 501


>gi|167464316|ref|ZP_02329405.1| flagellar hook-associated protein FlgK [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 519

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/514 (14%), Positives = 166/514 (32%), Gaps = 40/514 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S    F  A+     +      I  NI N     Y R+                      
Sbjct: 3   SSFFGFETAKRSMLASQNVLNIIGHNISNQHIPGYSRQRVNLNASMPIEYPGIGHTTIPG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V + +         D+        +G   + +      E +   +  +      +
Sbjct: 63  QMGTGVDMHSITRIRDRFLDEQFRNEYKNLGNWEIQKDTLDKLEGIF-PEPSDTGLRKVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               DS   +SK+  ++   K +  NA  + +  N ++++++ I    DK + ++I ++ 
Sbjct: 122 ENFWDSWAEFSKDSDKNTGRKLIRQNAIALTEAINQASKQIKDISQGLDKSLNMKIEDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN----NDMVVY 220
             L  ++ +N+ I         A+D  D+RD +  ++S+++ I+          +   V 
Sbjct: 182 SILKTISTLNNEITRVEKMGDHANDLRDERDRMTDELSKMMNITVSEGPEGYNISMGKVN 241

Query: 221 TSDGTTLFETVPRDI----------------NFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
              GT +       I                     ++Y    +     I   + +    
Sbjct: 242 LLSGTEVNPVTKESIEESFKSGDLSSGELAGLITSRDTYVHDYKKQLDDIANTIANGEIT 301

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
             +PKG +     + D V     N+       +           G     P         
Sbjct: 302 ITIPKGSVLPEGTVLDGVTYTGANRTLTEDLTVTVKGLNGLHQLGYINGNPPEAGGPFFT 361

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             D       +E IC+NP   ++P+ +      ++    + K ++G   L        + 
Sbjct: 362 TKDGSDVI-TAENICLNPDIINDPNKIAS-SMATEGTGADEKLISGNNTLAKLMAQLKDT 419

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            F F       TN T+ ++  + +G L     ++   +     +        ++  GV  
Sbjct: 420 KFTFSGAGRGITNSTINDFYGSLVGQLGVQSKEATRQYENEGKLVVQADTRRTSVSGVVE 479

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            EE+  ++K   S+N + + +   D++L  L+ G
Sbjct: 480 LEEMMEMVKYNHSFNAAARFMTTYDEILNKLING 513


>gi|74101664|gb|AAZ99754.1| FlgKL [Aeromonas hydrophila]
          Length = 437

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/480 (11%), Positives = 146/480 (30%), Gaps = 53/480 (11%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRSE 58
            N   +  N A        +NI N +   Y R++ M           +   V V   R  
Sbjct: 2   LNIGFSGLNAAQIALNVTAQNIANVNTIGYSRQEAMMGSLSGFGRLDNGMGVEVTGVRRI 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +          S+ G       +    E +   +  N      +     SL +   + 
Sbjct: 62  TDDYLVSQHWRSRSSTGASYSFHQYINTTEQLLGSESMN--IAKGLDSFFASLSAALDSP 119

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                   ++ +A  +   F      +       D ++   +S +  +L ++  +N  I 
Sbjct: 120 ETPAQRSQIVSSAGALANRFGQLNESMLTQEKQIDDQLNSTVSQVNSYLKQVAELNTQIS 179

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            + +   +     D R+ +++++S  + +    +++    +    G  L           
Sbjct: 180 EQASKGVNTSVLEDSREQIVRELSTFMEVRVNRQSDGSFSLSLPQGQPLVLAGSSSTLSL 239

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +S +++              S     +  G +  +++ R +V+   +++L+++A+ L 
Sbjct: 240 AGDSLSLS----------FGPQSFDVPKLHGGSLAGVIEYRTTVLRPLRDELNQIAKKLA 289

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
             F+ K     +    PG  +        +                      + DG +  
Sbjct: 290 DDFNAKQSGGVDLHGNPGKSLFTYDPLNPSGTL------------------KIADGFTGD 331

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                     +G    +       +  +               +     +G +      +
Sbjct: 332 DLAFAKAGGGSGDNRNLQELLTIKDSQY---------------DAYSALLGRMAVQSGQA 376

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +   ++   S+  GVN  EE   ++   ++Y  + K+I  +D++  ++L  
Sbjct: 377 KATMEADANMEKQLATKLSSVSGVNTDEEGVKIMAYTKAYQANAKVISTSDQLFNSILNM 436


>gi|319898657|ref|YP_004158750.1| flagellar hook-associated protein FlgK [Bartonella clarridgeiae 73]
 gi|319402621|emb|CBI76166.1| Flagellar hook-associated protein FlgK [Bartonella clarridgeiae 73]
          Length = 456

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/481 (23%), Positives = 217/481 (45%), Gaps = 26/481 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N A+N     + +  ++ RNI  A + NY RR +     P     V  R +  
Sbjct: 1   MSLNLALNSARNSLKATTGRLDTVSRNIVRAGDPNYTRRTSYLESGPGGAVHVVVRRDGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S       L +       +   D ++NSP+  + + + +L+ Y+ +  +
Sbjct: 61  IHLLNNYLVKASEAAAAGSLSNGLNRLSDIYGADKFSNSPSKLLGEFQKALQLYANDPQQ 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G   +D A ++ +  NT + E++K+  D + +I+  +  +   L +   ++  +  +
Sbjct: 121 RSNGDAAVDRARDLAKGLNTGSYEIEKLYNDVNSDIQDSVDYINDLLQKFHELDQLVVRE 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +  D   ++DQRD +L+++S+ IGI+T+  ++  M +Y  DG+TL++ +PR ++F+  
Sbjct: 181 RNANRDDSVYMDQRDAILKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKMPRTVSFQFS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            S         +FIDGV +  +   +    G +  LL++RD +VP +Q QLDE+A  L+ 
Sbjct: 241 ASLPPGISGKQVFIDGVPLGHSSFLNPNGGGNLGGLLKLRDDIVPQYQKQLDEIANALMH 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F     +  + +   G                                   R   +   
Sbjct: 301 MFPGPPSLFLDGDQPSGQIGPLEGLAG-------------------------RIQLNPIF 335

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                      + D +    D+FN    F    G++ + ++ ++++NS+GWLE  RS++ 
Sbjct: 336 DSKTEGGGPEHFGDNLQALVDAFNGKQQFGTGTGLDPDQSIKDFSKNSVGWLEGLRSNAD 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +F H +E+ SN  GVN  +EL+ ++++EQ+Y  ++++I    KML  LL  V
Sbjct: 396 KEAKYQGTMFLHAAEALSNATGVNADDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455

Query: 480 K 480
           +
Sbjct: 456 R 456


>gi|323341352|ref|ZP_08081596.1| hypothetical protein HMPREF0542_12027 [Lactobacillus ruminis ATCC
           25644]
 gi|323091229|gb|EFZ33857.1| hypothetical protein HMPREF0542_12027 [Lactobacillus ruminis ATCC
           25644]
          Length = 514

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/512 (14%), Positives = 161/512 (31%), Gaps = 37/512 (7%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPE 48
           MS L      A +          +   NI N +   Y R+    T               
Sbjct: 1   MSGLFGTLGTATSGITANQVALQTTAHNIANTNTDGYSRQRVHMTTKPPYVIAGTGTIGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V        +     +   +S               E +   +  ++     ++ L 
Sbjct: 61  GVNVTGVERVVDDFVRSQIREANSKYTYNTQKSDTLGQLEDIL-HEPSDDGVIKSLNTLT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DS +  ++N         V++NA     + +  A ++ ++  D+   ++  + +    + 
Sbjct: 120 DSWQKLAENPELGTSKTLVVENANSFADSIHQMATQINQLHKDSISNLQKSVLDFNEKID 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N  +   T+     +D LDQRD LL+ IS ++ I+T         +   DG T+ 
Sbjct: 180 QLADINKKVFTLTSRGETPNDLLDQRDTLLKDISGLVNINTEFDEYGRTTLSV-DGQTIL 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVV---------------------SSNQGSAV 267
           +      N   +   T  + +  +   G                         +   +  
Sbjct: 239 DFKNETHNTLSVVVGTDANGNALVSDRGDSSKANVALGRQAEVGTVMLTKKDDAGNTAYS 298

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                +  +             +DE+   +       + +    +N    F   G     
Sbjct: 299 EIKTSEGDMGGYQESAKEILEHMDELNDFIAKIGKATNMVMTGGQNKLDGFFTLGNDPSR 358

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
             L   +++ I  +P        L   GS          + A          D+    + 
Sbjct: 359 YALDFKVNDAIAKDPSKIPAGKALDGTGSAGDGSRALAVSWAMKTKFKTPVRDADLDAYD 418

Query: 388 FDPVAGI--NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
              +         T  E   N +     ++  + ++    +VV N++     +  GVN+ 
Sbjct: 419 ESTMKFNESQDGQTFAETFNNIVTKNGISKQKADNMAAAQKVVLNNLENKNESMSGVNIN 478

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           EE+S +IK +Q +  + +++    +ML TL+ 
Sbjct: 479 EEMSDVIKFQQGFQANTRVLSVIAEMLDTLVN 510


>gi|89056665|ref|YP_512116.1| flagellar hook-associated protein FlgK [Jannaschia sp. CCS1]
 gi|88866214|gb|ABD57091.1| flagellar hook-associated protein FlgK putative [Jannaschia sp.
           CCS1]
          Length = 487

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/487 (15%), Positives = 156/487 (32%), Gaps = 15/487 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MS+ +  + A +    +++    +  N+ NA  + Y  R               V +V  
Sbjct: 1   MSISSTLSSALSGLTASARAADIVSSNLANAMTEGYAVRRLDLAARQTGNDGAGVRIVGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +   +        ++ +G  +    F    E M        S +  ++     L + +
Sbjct: 61  TRQEDTILIGQRRLATADLGANQANADFMTRLEAMLGAPDDPGSLSARLADFEGKLIAAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                       +  A  +    N  +  +Q  R  AD  I + +  +   L  L  +N 
Sbjct: 121 NAPWNTTNLTGAVQGASAIADTLNELSSGIQTERKRADASIGIAVDQINGALESLAELNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     S  D    +D ++ L+ +++  + + T   NN  + VY+ DG  L      ++
Sbjct: 181 RILSVGYSGGDTAALVDAQNQLVDQVAPYVPLQTRRDNNGLLNVYSDDGHVLVNYRAAEL 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            F    +           + G+ +         +  A   G+++AL  +RDS  P  Q +
Sbjct: 241 GFVAKPTMDPYQSIGNGTLSGLTLDGRALRMDGEYPAFAGGQLRALFDVRDSQAPEAQTR 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  L       D    +     G         +       +     +       P+
Sbjct: 301 LDGIALDLAER---FDAAGLDPSIAAGSPSLFTDAGILVDGSNELGLASRIRVNAAVVPN 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                  +       V+   G    +    +  +        A      ++ E    ++ 
Sbjct: 358 EGGAVWRLRDGLGAAVEGPTGNATFLTAQIERLSTTQTTTSTAFSGAQRSMSELISENLS 417

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +   R  +      +      +  +     GV+   EL  L+++EQ Y  + ++I    
Sbjct: 418 IVGLGRVTAETNLSSASAQNTALKTAELAG-GVDSDAELQRLLQIEQMYAANARVINVAG 476

Query: 470 KMLQTLL 476
           +M+  LL
Sbjct: 477 QMMDELL 483


>gi|157693942|ref|YP_001488404.1| flagellar hook-associated protein FlgK [Bacillus pumilus SAFR-032]
 gi|157682700|gb|ABV63844.1| flagellar hook-associated protein 1 [Bacillus pumilus SAFR-032]
          Length = 506

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/500 (15%), Positives = 156/500 (31%), Gaps = 23/500 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+               N+ NA+   Y R+                      
Sbjct: 3   STFMGLETAKRGITAQRAGLYVTSNNVSNANTDGYSRQRVTFKAENPYPVISVYDGKTYG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V T      +  D     H++ +          +  E +  +D  +       
Sbjct: 63  QMGTGVQVGTVERIRDSFLDLQFRDHNNNLSYYSAKSDALSQMEGVM-NDLTDEGLNRAF 121

Query: 105 SKLRDSLESYS--KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
             L  SL+  S  KN         V  +A+ +V  F      +  I+ +   E++    N
Sbjct: 122 DNLWKSLQVLSETKNADTASARTVVKTSAQALVDQFRLLNSSLTTIQKNLKTELDSTAKN 181

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   LS++  VN  I     + +  +D  D RD L+ ++S  + I      +    +  +
Sbjct: 182 VNTILSQIDEVNKQIAAVEPNGYLPNDLYDTRDALVDQLSSFVDIKVSYNPSGGNALKIA 241

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDS 281
           +GT   + +  +          +T+E + + I     +    S       I A     + 
Sbjct: 242 EGTVNIDIIGANGQSAGTILNGITNEKSELQISYDNTTGLVNSLQFGTTTIAADQLQVNG 301

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            V         M+         +     +      +   + +      L     +     
Sbjct: 302 KVKALVEAYGYMSNGTEKGMYPEMLAELDEVAQVFMDTFNDVHKQGYTLNGTSGQDFFDI 361

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAG--YPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                    L     VS   L +  N+A        +    +   N     +       T
Sbjct: 362 ENNNELNKGLAARIKVSDVILASTDNIAASLNQTQGDGSNATKLANIQDLKLPIGGNTTT 421

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           + +Y +N I  +      +  L   S  + N  +E   +T  V++ EE++ +I+ + +YN
Sbjct: 422 IQDYYQNVIAEMGIQGKKNMTLESSSAALVNSANERRMSTSAVSIDEEMTNMIQFQHAYN 481

Query: 460 ISNKLIMFTDKMLQTLLEGV 479
            + +++   D++L  ++ G+
Sbjct: 482 AAARVVTLQDEILDKVINGM 501


>gi|328545490|ref|YP_004305599.1| flagellar hook-associated protein K [polymorphum gilvum
           SL003B-26A1]
 gi|326415231|gb|ADZ72294.1| Flagellar hook-associated protein K [Polymorphum gilvum
           SL003B-26A1]
          Length = 496

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 147/496 (29%), Positives = 239/496 (48%), Gaps = 16/496 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54
           MSL      AQ+       + A++ RNI  A +  Y R+  + +           V V  
Sbjct: 1   MSLSVALQVAQSALAARQTETATVSRNIAGAQDPGYTRKSVVLSTVVSASGQTGGVRVDG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     L   +S    Q+ +           +D     SP   + KL  S+++Y
Sbjct: 61  IARTTDSALYNSLVRATSVATSQQAIVEGLDKLNQTVSDTELELSPAAALGKLEISIQNY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +    IL +T++D A+++    N     VQ +RA+AD ++   +  +   LS+L  +N
Sbjct: 121 ASDPGNAILAQTMLDAAKDMATTLNEYTALVQNVRAEADADMASSVKTINNLLSQLESLN 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   T    D  D LD RD +L  +SE IGIST+ R++  +VVYT  G TLFET  R 
Sbjct: 181 TIIVKGTQGGADVSDALDARDRVLLSLSEEIGISTLTRSDGGVVVYTDGGVTLFETTART 240

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           ++F   N+Y+  +  N ++IDGV V+ +N    +  G++  L ++RD +   +Q+QLDE+
Sbjct: 241 VSFTPTNTYSAATVGNAVYIDGVPVTGANAIMPISSGRLHGLSELRDDIAVTYQSQLDEI 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------QGISETICVNPQYRSN 347
           AR LI +F+E D   G   +  GLF   G   +             I  +  V+P    N
Sbjct: 301 ARGLIEAFAESDQSGGGGPDQAGLFTYAGAPAVPAASTLVAGLAGDIRISASVDPDQGGN 360

Query: 348 PSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
              LRDGG     +  + +N  +LAGY D +  + ++FN+  +FD    ++   TL  +A
Sbjct: 361 LDLLRDGGISDPLNPDYDYNPGDLAGYSDRLQQFLNAFNQPRVFDGGVELDPTDTLKGFA 420

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +S  WL++ R  +        V+    +ES SN  GVNL EE++ L+ +E++Y  + KL
Sbjct: 421 SSSASWLQRERQTATSNLEVQAVIVTRTAESLSNATGVNLDEEMTRLLDIERAYAAAAKL 480

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D+ML+ LL   +
Sbjct: 481 IAAVDRMLEDLLTAAR 496


>gi|240137258|ref|YP_002961727.1| FlgK protein [Methylobacterium extorquens AM1]
 gi|240007224|gb|ACS38450.1| FlgK protein [Methylobacterium extorquens AM1]
          Length = 487

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 204/487 (41%), Gaps = 7/487 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L    N A+      S Q A   RN+  A++  Y R+             VT      
Sbjct: 1   MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS   +   L +          D     +P   ++  + +L++ +     
Sbjct: 61  PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  +++A+ +  + + +A  +   RA+AD  I   +S +   L      N A+   
Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFDAANRAVTKT 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   DA D LD RD +L  +S+ IG+  + R   DM +YT  G TLFE  PR + F   
Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + +   +    + IDGV V+       +  G+I  L+ +RD     ++ QLD +A  LI 
Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354
           +F+E D +  +S    GLF A G   L     +      IS    V+P    + + LR G
Sbjct: 301 AFAESDAVGLDSGPRAGLFTAGGSGILPPAAGRTGLAASISVNAAVDPARGGSVALLRSG 360

Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           G     +              +     +       DP  G+ T+  L + A +S GWLE 
Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALTAARPVDPALGLGTSAGLPDLATSSAGWLEA 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R D+       + +    +E+ SN  GVN  +E +  +++E+SY+ S KLI   + +L+
Sbjct: 421 QRKDASTEASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISVVNDLLK 480

Query: 474 TLLEGVK 480
           TLL+ V+
Sbjct: 481 TLLDAVR 487


>gi|300024587|ref|YP_003757198.1| flagellar hook-associated protein FlgK [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526408|gb|ADJ24877.1| flagellar hook-associated protein FlgK [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 487

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/486 (26%), Positives = 224/486 (46%), Gaps = 7/486 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-NVTVVTQRSEN 59
           MSL    + A++     S+Q + + RNI    + +  R+       P   V+V      +
Sbjct: 1   MSLTLSTDTARSSLQATSEQISVVSRNIARVHDADATRKIATLVSGPGVGVSVPRIDRTS 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +        +SA   Q  + S     +    D    +SP   I+KL  +L++YS N  
Sbjct: 61  DQLLFNTYLTANSASQAQTSITSALGQLQSTVDDTDQEHSPAALIAKLSATLQTYSGNPQ 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +  +V+  A+ V    N+++  V ++R  AD +I   ++N+   LS+   +N+ +  
Sbjct: 121 NPAVAASVVSAAKNVSNALNSASATVTQVRQQADADIATSVANINDLLSQFENLNNQVIR 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            +++  D  D LD RD +L+++S  +GI T+ R N DM +YT  G TLF+  PR + FE+
Sbjct: 181 GSSNGRDVTDVLDARDAVLKQLSTEVGIRTVSRANGDMAIYTDSGVTLFDRAPRAVTFEQ 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +    +    ++ DGV ++       +  GK+  L+ +RD +   +Q+QLDEMAR LI
Sbjct: 241 TQNLAAGAPGGAVYADGVPIAGTSHILEIQSGKLAGLMSVRDDIAVTYQSQLDEMARGLI 300

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ-----GISETICVNPQYRSNPSFLRD 353
            +F+E D  A  +                           I     V+P    N   +RD
Sbjct: 301 NAFAETDQSATPTLPAATGLFTYSGGPAIPASAMAGLASSIKINASVDPGQGGNAELIRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           GG     + +N  N   + D I     S N    FD    +  + ++++YA+NS+ WLE 
Sbjct: 361 GGISGASYKYNSANAPAFTDRIQSLISSLNTGQTFDASTQLPASSSVMDYAKNSVSWLEA 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R  +         V    + S S   GVNL EE++ L+ +E+++  S++LI   ++ML 
Sbjct: 421 LRQSATAEADYRSTVAQRATTSLSQATGVNLDEEMTNLLDLERTFQASSRLINTVNEMLS 480

Query: 474 TLLEGV 479
           TL++ +
Sbjct: 481 TLIQSL 486


>gi|262396029|ref|YP_003287882.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
 gi|262339623|gb|ACY53417.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
          Length = 457

 Score =  201 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 144/481 (29%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57
           N A +             +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLIKQTWSTNSMAAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D   +    +++    +  +  VN  +
Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALNHANSLMENIAKVNKQL 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S+ I I T  + +  + V  + G  L          
Sbjct: 183 VEMQGTGGNPSQLMDERDKLIGELSQTIEIRTTEQPDGSVQVTLTSGQPLVMGTDHGKLA 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  L++MA+ L
Sbjct: 243 AVPDPSDPYVADLHVTFSSQSFAIGDS---LGGKLGAINDYQTDVLKPNQLALNDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +    PG  +                               L      
Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LDITELT 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  ++     G  D++    +  NK         +    +L +   + +G        
Sbjct: 340 PGELAFSSDGTPGNADVLQSLINLSNKPVSVTGYGFV----SLNDAFSSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|91224193|ref|ZP_01259456.1| putative flagellar hook-associated protein [Vibrio alginolyticus
           12G01]
 gi|91191104|gb|EAS77370.1| putative flagellar hook-associated protein [Vibrio alginolyticus
           12G01]
          Length = 457

 Score =  201 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/481 (13%), Positives = 146/481 (30%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57
           N A +             +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLIKQTWSTNSMAAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D   +    +++    +  +  VN  +
Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLYNQHKDMSDQRNAALNHANSLMENIAKVNKQL 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S+ I I T  +++  + V  + G  L          
Sbjct: 183 VEMQGTGGNPSQLMDERDRLIGELSQTIEIKTTQQHDGSVQVTLTSGQPLVMGTDHGKLE 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  L++MA+ L
Sbjct: 243 AIPDPSDPYLADLHVTFSNQSFAIGDS---LGGKLGAINDYQTEVLKPNQLALNDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +    PG  +                 T                    
Sbjct: 300 ADEYNAVLATGKDLNGNPGKPLFSYDPANPAASLDITKLTPDE----------------- 342

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                ++     G  D +    +  NK            +V+L +   + +G        
Sbjct: 343 ---LAFSSDGTPGNADALQSLIELSNKPVAVSG----YGSVSLNDAFSSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++  +     +      +  N   VN  EE + L+    ++N + K+I   +++L ++L+
Sbjct: 396 ANADYQAKLAMNKQAHAARDNVSSVNSDEEAANLMMFANAHNANMKVISTANQLLDSILQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|254559269|ref|YP_003066364.1| FlgK protein [Methylobacterium extorquens DM4]
 gi|254266547|emb|CAX22311.1| FlgK protein [Methylobacterium extorquens DM4]
          Length = 487

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 7/487 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L    N A+      S Q A   RN+  A++  Y R+             VT      
Sbjct: 1   MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS   +   L +          D     +P   ++  + +L++ +     
Sbjct: 61  PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  +++A+ +  + + +A  +   RA+AD  I   +S +   L      N A+   
Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFEAANRAVTKT 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   DA D LD RD +L  +S+ IG+  + R   DM +YT  G TLFE  PR + F   
Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + +   +    + IDGV V+       +  G+I  L+ +RD     ++ QLD +A  LI 
Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354
           +F+E D +  +S    GLF   G   L     +      IS    V+P    + + LR G
Sbjct: 301 AFAESDAVGFDSGPRAGLFTVGGSGILPTGAGRTGLAASISVNAAVDPARGGSVALLRSG 360

Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           G     +              +     +       DP  G+ T+  L + A +S GWLE 
Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALTAARPVDPDLGLGTSAGLPDLATSSAGWLEA 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R D+       + +    +E+ SN  GVN  +E +  +++E+SY+ S KLI   + +L+
Sbjct: 421 QRKDASTDASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISVVNDLLK 480

Query: 474 TLLEGVK 480
           TLL+ V+
Sbjct: 481 TLLDAVR 487


>gi|153831692|ref|ZP_01984359.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01]
 gi|148872202|gb|EDL71019.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01]
          Length = 457

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 151/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +T                V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGYSRQQALTASVGDGKYNKLSPGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         +  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYSAGYTTAMSQLENTLG--ADGFSVSAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D   +    +S+    ++ +  VN  I
Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALSHANSLMANIAQVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RDVL+ ++S+I+ I T  + +  M V  + G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTRDVLIGELSQIVEIKTTDQPDGSMQVTLASGQPLVMGSDYGQLA 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            K +          +         +       GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AKRDPSDPYLADLSVEFASQSFVID---HSVGGKLGAINDYQTEVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +    PG  +                               L      
Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LTITDIS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  D++N      NK            +++L +     +G        
Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPVSV----TGYGSLSLNDAFTAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|149203101|ref|ZP_01880072.1| flagellar hook-associated protein K [Roseovarius sp. TM1035]
 gi|149143647|gb|EDM31683.1| flagellar hook-associated protein K [Roseovarius sp. TM1035]
          Length = 482

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 164/484 (33%), Gaps = 12/484 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSE 58
           MSL +  + A +     ++    I  N+ NA  + +  R+     +     V V     +
Sbjct: 1   MSLGSALSSALSGLAANTRAVDVISGNLANALTEGFAPREVTLAATRDGRGVQVTGIVRQ 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                        SA     +  +F    E         NS T  ++ L  +LE+ +   
Sbjct: 61  VDLGLLSDRRLADSARAASEVQAAFARAVESSVGTPDAPNSLTGRLATLEVALETAATRP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
            +      V+  A+++    N +A ++ ++R  AD++I   +  L   L E+  +N  I 
Sbjct: 121 EDTNRLDAVLSAAQDLTAGINDAAADIARLRTAADRDIATTVQELNAGLQEVAALNVQIT 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +   D     DQR   +  +S I+ +  + R +  + + T+ G  L +     + F 
Sbjct: 181 TGQSRGTDITALEDQRQRTIDTLSLIVPLRQVPRGDASVALVTTAGGMLLDGRAVKLTFA 240

Query: 239 KMNSYTVTSE-----SNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                T          + I IDG  V        +  G++ ALL IRD       ++LD 
Sbjct: 241 ATPLVTPHMTHKEAQLSGIAIDGADVPIGADRGPLQGGRLGALLDIRDRAAVEANSKLDA 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +AR L+           ++   PG            +    +     +      +PS   
Sbjct: 301 LARDLVER---FQAPGLDATRAPGAPGLLTDAGAIFEAGNALGLAGRIAVTRLVDPSQGG 357

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
               +            G   L+     +  +  +           +   +A   I  L 
Sbjct: 358 ALFRLRDGLGATDGGPPGAGALLGALSHALTQTSVLPSGLLGGAARSAANHAATLISSLS 417

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           + R  +      +               GV+   EL  L+ VEQ++  + ++I   D +L
Sbjct: 418 QERVTTEARLSFATGQSAEFRAQELA-TGVDSDAELQRLLLVEQAFGANARMIQTIDDLL 476

Query: 473 QTLL 476
            TLL
Sbjct: 477 DTLL 480


>gi|163850124|ref|YP_001638167.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens
           PA1]
 gi|163661729|gb|ABY29096.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens
           PA1]
          Length = 487

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 205/487 (42%), Gaps = 7/487 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L    N A+      S Q A   RN+  A++  Y R+             VT      
Sbjct: 1   MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS   +   L +          D     +P   ++  + +L++ +     
Sbjct: 61  PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  +++A+ +  + + +A  +   RA+AD  I   +S +   L      N A+   
Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFDAANRAVTKT 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   DA D LD RD +L  +S+ IG+  + R   DM +YT  G TLFE  PR + F   
Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + +   +    + IDGV V+       +  G+I  L+ +RD     ++ QLD +A  LI 
Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354
           +F+E D +  +S    GLF A G   L     +      IS    V+P    + + LR G
Sbjct: 301 AFAESDAVGFDSGPRAGLFTAGGSGTLPTAAGRTGLAASISVNAAVDPARGGSVALLRSG 360

Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           G     +              +     + +     DP  G+ T+  L + A +S GWLE 
Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALSAARPVDPALGLGTSAGLPDLAASSAGWLEA 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R D+       + +    +E+ SN  GVN  +E +  +++E+SY+ S KLI   + +L+
Sbjct: 421 QRKDASTDASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISVVNDLLK 480

Query: 474 TLLEGVK 480
           TLL+ V+
Sbjct: 481 TLLDAVR 487


>gi|319405422|emb|CBI79041.1| Flagellar hook-associated protein FlgK [Bartonella sp. AR 15-3]
          Length = 456

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 115/481 (23%), Positives = 218/481 (45%), Gaps = 26/481 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N A+N     + +  ++ RN+  A + NY RR +     P     V  R +  
Sbjct: 1   MSLNLALNSARNSLKATTGRLDTVSRNVVRAGDPNYTRRTSYLESGPGGAVHVVVRRDGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S       L +       +   D ++NSP+  + + + +L+ Y+ +  +
Sbjct: 61  IHLLNNYLVKASEAAASGTLSNGLNRLSDIYGADKFSNSPSKLLGEFQKALQLYANDPQQ 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G+  +D A ++ +  N  +RE++K+  D + +IE  ++ +   L +   ++  +  +
Sbjct: 121 RSNGEAAVDRARDLAKGLNAGSREIEKLCNDVNSDIEDSVNYINGLLQKFHELDQLVVRE 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +  D   ++DQRD +L+++S+ IGI+T+  ++  M +Y  DG+TL++ +PR ++F+  
Sbjct: 181 RNANRDDSVYMDQRDAVLKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKIPRTVSFQFS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            S         IFIDGV +  +        G +  LLQ+ D ++P +Q QLDE+A  LI 
Sbjct: 241 TSLPPGISGKQIFIDGVPLGHSSFIDPNGGGNLGGLLQLCDDIIPQYQKQLDEIANALIQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F     +  + +   G   A                               R   +   
Sbjct: 301 MFPGPPSLFLDGDQPSGQISALEGLAG-------------------------RIQLNPIF 335

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                      + D +    D+FNK   F    G++T  +++++ +NS+ WLE  RS++ 
Sbjct: 336 DSKTEGGGPEHFNDNLQELVDAFNKKQKFGTGTGLDTEQSIMDFGKNSVSWLEGLRSNAD 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +F H +E+ SN  GVN  +EL+ ++++EQ+Y  ++++I    KML  LL  V
Sbjct: 396 KETRYQGAMFLHAAEALSNATGVNTDDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455

Query: 480 K 480
           +
Sbjct: 456 R 456


>gi|269960122|ref|ZP_06174498.1| putative flagellar hook-associated protein 1 [Vibrio harveyi 1DA3]
 gi|269835093|gb|EEZ89176.1| putative flagellar hook-associated protein 1 [Vibrio harveyi 1DA3]
          Length = 457

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 151/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +T                V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGYSRQQALTASVGDGKYNKLSPGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         +  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYSAGYTTAMSQLENTLG--ADGFSVSAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D   +    +++    ++ +  VN  I
Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRTAALNHANSLMANIADVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RDVL+ ++S+I+ I T  + +  M V  + G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTRDVLIGELSQIVEIKTTDQPDGSMQVTLASGQPLVMGSDYGQLT 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            K +          +         +       GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AKPDPSDPYLADLSVDFASQSFVID---HSVGGKLGAINDYQTDVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +    PG  +                               L      
Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LTITDIS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  D++N      NK            +++L +     +G        
Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPVSV----TGYGSLSLNDAFTAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|254488055|ref|ZP_05101260.1| flagellar hook-associated protein FlgK [Roseobacter sp. GAI101]
 gi|214044924|gb|EEB85562.1| flagellar hook-associated protein FlgK [Roseobacter sp. GAI101]
          Length = 490

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 95/489 (19%), Positives = 186/489 (38%), Gaps = 20/489 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----ENVTVVTQR 56
           MS+    + A      A +    I  N+ NA    Y  R    +         V +    
Sbjct: 7   MSISGALSSAMQGLRAAGRGSEVIASNLSNALTPGYGVRSLELSADTTATHGGVKIDGVS 66

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                          +       +       E +        S +   ++L  +L + + 
Sbjct: 67  RLVNESIVHDKRIAEAGQANASAILDLYIKIEDLLGAPDDPASLSAQTAQLEKNLITAAS 126

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                    TV+ +A  +   FN ++  +QK+R  AD+ IEL++  L   L ++  +N  
Sbjct: 127 RPDAPERLSTVVASARILANTFNEASDGLQKVRTTADRTIELQVDQLNNALLQVQELNAQ 186

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I       +++   LD R  ++ +IS ++ + T+ R+N  + +Y++ G  L +++  +I 
Sbjct: 187 ITKTQVQGNNSSGLLDLRQRVIDEISVLVPVRTVARDNGQVAIYSTGGAVLLDSLAAEIG 246

Query: 237 FEKMNSYTVTSESNPIFIDGVVV------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           FE+ N  T     +   + G+ +      + +    +  G I A  +IRD +    Q Q+
Sbjct: 247 FERSNLVTPYMSESAGTLSGLTINGIAFRTGSSSGVLSGGSIAAQFEIRDEIAVEAQAQI 306

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSN 347
           D +AR L+  F +     G +    GLF  +G        N L Q +     V+P     
Sbjct: 307 DALARDLVERFQDPAVDPGLAIGDAGLFTDEGNFFDPANENGLAQRLVLNAAVDPDQGGE 366

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              LRD                G   L+N+   + +   +         + + ++     
Sbjct: 367 TWRLRD------GINAAGPGDVGDATLLNNMISALSTGRVSSSGIFSGGSYSTIDLTSTL 420

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                  R ++  +   S      ++E   +  GV+  +EL  L+ VEQ++  + +++  
Sbjct: 421 TSHYGAERLNAEQIQSFSATQVTELTERLLSE-GVDSDQELQKLLLVEQAFAANARMVQA 479

Query: 468 TDKMLQTLL 476
            D+M+QTLL
Sbjct: 480 VDEMMQTLL 488


>gi|219670203|ref|YP_002460638.1| flagellar hook-associated protein FlgK [Desulfitobacterium
           hafniense DCB-2]
 gi|219540463|gb|ACL22202.1| flagellar hook-associated protein FlgK [Desulfitobacterium
           hafniense DCB-2]
          Length = 583

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/578 (11%), Positives = 166/578 (28%), Gaps = 101/578 (17%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  +    A+    +      +   NI NA+   Y R+      +               
Sbjct: 3   STFSGLELARRALESQQIALDTTGHNIANANTIGYTRQVVNLQATSPDSIPGMGHYLSIG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             VTV +         D+     +S        ++  A  E +  ++  +NS ++ +++ 
Sbjct: 63  TGVTVQSIERARDIFIDRQFRWENSKQEYWATRENTLAQIEGLL-NEPSDNSLSNDLTQF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +    + N         +++ A  +    +   +++ + +   D  + ++I  +  + 
Sbjct: 122 WSAWSVLANNPENLGARSVILERAATLADTLHHIDQQITEAQKSLDSSVRVQIDQINSYA 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---- 223
           +++  +N  IK    +  + +D LD+RD L+  +S+++ +  +   + +      +    
Sbjct: 182 NQIQELNFQIKKVQITGDNPNDLLDKRDALIDDLSKLVNVRVVESRDPNFTDREVNIFKL 241

Query: 224 --------GTTLFETVPRDINFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIK 273
                      L +            +         +          ++      +G+++
Sbjct: 242 YIGNEKATNQILVDDTKAYQLATPETTDADGLPFAEVKWAAGHPQAGASVDLGEGQGELQ 301

Query: 274 ALLQIRDSV-------------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           + + +R S              +   ++Q +++AR +  + +       + E   G    
Sbjct: 302 SSILMRGSGFEYSAGDTKATAHLAYLRDQFNQLARGIAEALNAIHRTGIDKEGNFGEDFF 361

Query: 321 DGIKDLDNKLCQGISET--------ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                                    I        +    +   S++  +          P
Sbjct: 362 TSADGNPISAGNIKVNQDLIDDPWKIATGKDNFGDGEIAKALSSLATGWTGLTDLYLKNP 421

Query: 373 DLINHYCDSFNKNFIFDPVAG------------------------------INTNVTLLE 402
                  D        D  AG                                  +T   
Sbjct: 422 AGNTVLIDPATGAITTDTAAGRPMAWATSADTPLKYPVGHPLEGDPILIDPATGTITTDT 481

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHI---------------------SESYSNTVG 441
                +   +     +  +          +                          + VG
Sbjct: 482 AIGKPVVLAQTPPLSASSIGDYYGAALAELGVDAQQATRMKESQAVLVTHMYNQRQSVVG 541

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           VN+ EE++ LIK ++SY  + +++   D ML T++ G+
Sbjct: 542 VNMDEEITNLIKFQKSYTAAARIVTMLDSMLDTIVNGM 579


>gi|251799725|ref|YP_003014456.1| flagellar hook-associated protein FlgK [Paenibacillus sp. JDR-2]
 gi|247547351|gb|ACT04370.1| flagellar hook-associated protein FlgK [Paenibacillus sp. JDR-2]
          Length = 518

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/520 (14%), Positives = 172/520 (33%), Gaps = 51/520 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+           +   NI NA+   Y R+    T +               
Sbjct: 3   STFHGLETAKRSIFTTQTALNTTGHNISNANTSGYSRQRVNFTAARPIEAYGYSHSTAAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D   ++    +G   +        E +  ++  +      I
Sbjct: 63  QLGTGVEASSITRVRDKFLDSQFYSEYKWLGNYTVQSDTLEKLETI-VNEPSDTGLQTVI 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S   +S    SK          +++  + ++  FN +++++  +++D  +  ++ + NL+
Sbjct: 122 SNFWNSWSDLSKTPESADGRAVLVEQTKAMMDAFNYTSKQLADLKSDLTENAQINLDNLK 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              S +  +N  I+       DA+D  DQRD L+ ++S +  I     ++    +   + 
Sbjct: 182 SISSTIANLNGQIQRIEGIGDDANDLRDQRDALVDELSGLANIKVSDLSDGY-TITMGNV 240

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS--- 281
           + +            ++  T   E+  +    +  +        +G +  L Q+ ++   
Sbjct: 241 SLVAGKSAEGSQGLTLDDMTAAIENGDLNNGAIYGTMQSRDKYVQGYMDQLNQMANTIAN 300

Query: 282 ----------------------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                                         L E   V +   +    +        G  +
Sbjct: 301 GDIQVTIPKGSVLPEGTVLNGVTYAGANRTLAEDLTVTVQGLNGLHQLGYTMNGEQGEPL 360

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                D +       +  I +NP+  ++P+ L     V+         +AG   +     
Sbjct: 361 FT---DANGNTDNLTAANIQLNPKIAADPTLLATSMKVTFNDDGTETVVAGNNSMAVLMS 417

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            + +  F FD       N T+  + R  +G L     +   L    Q + + +     + 
Sbjct: 418 QARDTKFAFDA----TDNNTISGFFRAVVGQLGVQSKEMQRLQTNQQTIVDQVDSRRMSV 473

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GV+L EE+S L+K + +YN S +++   D+ L  ++  +
Sbjct: 474 SGVSLDEEMSDLVKFQHAYNASARVMTVIDETLDRIINSM 513


>gi|320353947|ref|YP_004195286.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus
           DSM 2032]
 gi|320122449|gb|ADW17995.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus
           DSM 2032]
          Length = 465

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 154/487 (31%), Gaps = 34/487 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
           SL+       +    +         NI NA  + Y R+    T S               
Sbjct: 3   SLITSLYTGASGIFTSQTAIQVTGNNITNAATEGYSRQTAHVTSSTPLTQGGLTYGTGSA 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      N     + L A S+  GQ     +   L ++    D  +      I    D+ 
Sbjct: 63  VDAIDRANDAFITRQLMAQSATYGQYEAAST--PLADIERILDIGDTGLASAIDSFFDAW 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E  S N S     + V+  A ++  + N  A+++ ++ +  +  IE  I +L   L ++ 
Sbjct: 121 EELSTNPSGVAERQQVVQEAADLAYHCNQIAQQLDEVVSGINTSIESAIPDLNDQLRQIA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N +I     +  DA+   DQRD+L+Q+ SE  G +    +N  + +   +G  L    
Sbjct: 181 DLNQSIMRTELAGGDANTLRDQRDLLVQQASETCGAAAYTDDNGMVCLQLQNGLPL---- 236

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
               N     S         I +     + +       G +K  L++RD  +P   + LD
Sbjct: 237 -VTGNVAASFSTAQVDGLTQISLTSAGTTFSLDDQDFGGALKGWLEVRDVTLPELHSDLD 295

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    ++     G  +      IA               +    +     +   L
Sbjct: 296 RLAYTIATDVNDLISTMGGLDQNGNAAIALFSLVAPTNPLANAWDGAAASIAAAFDDPTL 355

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G                        +S                 T  E         
Sbjct: 356 IAAGITGTTAD-----------------NSLCLEIAALRDTTSINGATYAEEYARIAANA 398

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S +  L   S  + + ++       GV+  EE+  LI+ +  Y  ++  I    +M
Sbjct: 399 GLLVSSNEQLLSSSGDLLDALNSKRDAVSGVSTDEEMVLLIQYQAGYEAASNYISVVKEM 458

Query: 472 LQTLLEG 478
           L TLL  
Sbjct: 459 LDTLLRM 465


>gi|218528728|ref|YP_002419544.1| flagellar hook-associated protein FlgK [Methylobacterium
           chloromethanicum CM4]
 gi|218521031|gb|ACK81616.1| flagellar hook-associated protein FlgK [Methylobacterium
           chloromethanicum CM4]
          Length = 487

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 203/487 (41%), Gaps = 7/487 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L    N A+      S Q A   RN+  A++  Y R+             VT      
Sbjct: 1   MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSTGGATVTITRAGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS   +   L +          D     +P   ++  + +L++ +     
Sbjct: 61  PALYARTLNASSDAARGDALLTGLTKLAQTVGDTDDPTAPAARLTTFQAALQAAANQPDN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  +++A+ +  + + +A  +   RA+AD  I   +S +   L      N A+   
Sbjct: 121 AQLARDAVESAKALAGSLSQAADAIHAARAEADAGIAASVSRINDLLVRFDAANRAVTKT 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   DA D LD RD +L  +S+ IG+  + R   DM +YT  G TLFE  PR + F   
Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGVHAVAREGGDMALYTDGGVTLFERGPRAVTFSAT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + +   +    + IDGV V+       +  G+I  L+ +RD     ++ QLD +A  LI 
Sbjct: 241 SVFAAGTVGGGVRIDGVPVTGATSPMPLNSGRIAGLVALRDGAAVQYEAQLDALAGGLID 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQYRSNPSFLRDG 354
           +F+E D +  +S     LF A G   L     +      IS    V+P    + + LR G
Sbjct: 301 AFAESDAVGFDSGPRAALFTAGGSGTLPTAAGRTGLAASISVNAAVDPARGGSVALLRSG 360

Query: 355 GSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           G     +              +     +       DP  G+ T+  L + A +S GWLE 
Sbjct: 361 GMNGSDYADPAAGGDAAYAGRLRGLLTALTAARPVDPALGLGTSAGLPDLAASSAGWLEA 420

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R D+       + +    +E+ SN  GVN  +E +  +++E+SY+ S KLI   + +L+
Sbjct: 421 QRKDASTDASYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLISIVNDLLK 480

Query: 474 TLLEGVK 480
           TLL+ V+
Sbjct: 481 TLLDAVR 487


>gi|28900128|ref|NP_799783.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260365778|ref|ZP_05778274.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           K5030]
 gi|260880700|ref|ZP_05893055.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AN-5034]
 gi|260897694|ref|ZP_05906190.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           Peru-466]
 gi|28808411|dbj|BAC61616.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308086274|gb|EFO35969.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           Peru-466]
 gi|308092694|gb|EFO42389.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AN-5034]
 gi|308114946|gb|EFO52486.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           K5030]
          Length = 457

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/481 (14%), Positives = 153/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +             S   V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYAAGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT  + +     D + +    +++    +S +  VN  I
Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRTAALTHANSLMSNIAHVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D R+ L+ ++S++I + T  + +  M V    G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTREKLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTEVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       + +   G  + +   D                         L      
Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  +++    D  NK            +V+L +   + +G        
Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|92114092|ref|YP_574020.1| flagellar hook-associated protein [Chromohalobacter salexigens DSM
           3043]
 gi|91797182|gb|ABE59321.1| Flagellar hook-associated protein [Chromohalobacter salexigens DSM
           3043]
          Length = 539

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/539 (13%), Positives = 172/539 (31%), Gaps = 67/539 (12%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVTQRSE 58
           ++F+   +  + A    ++   N+ N   + Y R+ T+         +   V+V   + +
Sbjct: 2   SIFSIGLSGLSAAQSALSTTSNNLSNVYTEGYNRQLTILGESYSNGSTGTGVSVDEVQRQ 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +   +  +  +S        QS  +  + + AD   +      +     SL+  +   
Sbjct: 62  FNSYVTEQYNDANSQKSALESYQSQVSQIDDLLAD--SDAGLAPLVQDFFSSLDDLTGAA 119

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S+    + V+ +A  +   F +    +  +R+  + ++E  ++++    +++  +ND I 
Sbjct: 120 SDPAARQGVLGSASSMAAQFRSFDSYLGDMRSSLNGQLESTVTDINNTATQIAKLNDQIT 179

Query: 179 FKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              A S  + +  LD+RD L+  ++E++G    +++ +   +   +G  L          
Sbjct: 180 QARAKSGEEPNSLLDKRDKLVSDLNELVGADLNIQDGDTYNINLENGQPLVSGTQSYDLE 239

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              ++   +            V+    SA   G++  LL  R   +   QNQL  M  VL
Sbjct: 240 AVESNEDPSRTVIAYRDAAGNVNQIDDSAFENGELGGLLSFRSETLDSVQNQLGRMTVVL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ------------------------- 332
              F+       +     G    +          Q                         
Sbjct: 300 GSEFNAVHENGVDLNGDAGEAFFEIGSPRVMSNSQNDGDGAISAEYSDVNQLTSSDYRIT 359

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD--- 389
                         + + L   GS          N++G     + +     +        
Sbjct: 360 YTGGEYQAERLSDGDTTTLTPDGSGDVDLDGMTLNISGTAQEGDTFMLQPTRTASQGFEV 419

Query: 390 ------------------------------PVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                                             +    ++ +   + +  +    + + 
Sbjct: 420 AITEGAEIAAASSGGGSGNNENALDLLDLQSEKMVGGTSSISDAYASLVNEVGNTTNITQ 479

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   +   + E   +  GVNL EE + L++ +Q Y  + ++I    ++L ++L+ 
Sbjct: 480 VNLDAQSGLTEQLREYQQSESGVNLDEEYANLVRYQQYYQANARVIDVGSQVLDSVLQL 538


>gi|328958295|ref|YP_004375681.1| flagellar hook-associated protein FlgK [Carnobacterium sp. 17-4]
 gi|328674619|gb|AEB30665.1| flagellar hook-associated protein FlgK [Carnobacterium sp. 17-4]
          Length = 472

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/489 (14%), Positives = 160/489 (32%), Gaps = 33/489 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPE 48
           MS L    N A    N       +   NI NA+   Y R+                    
Sbjct: 1   MSGLFGTLNNATKGLNVQQAALQTTSHNISNANTVGYSRQKVTMVADNPYTLGGIGQLGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V + +         +K L   +S++             E +  ++       + +SK+ 
Sbjct: 61  GVRISSIDRIVDPYVNKQLRNENSSLEMYGKKSDILGQLEGIF-NEPSTTGLNNNLSKVF 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            S      N         V  N+E      +  ++++  +     ++IE  + +    + 
Sbjct: 120 SSWTYLGSNPELATAKTMVAQNSETFTDTLHHMSKQIDSLHEGTVQDIEKNVLDFNAKVE 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N  I   T+     +D LDQ+D +L +++ I G+       N + +     + L 
Sbjct: 180 QLDSLNKQIFNMTSQGQAPNDLLDQQDKILSELTGIAGVEASYDKFNRVSITVGGESVLT 239

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           E     ++    +             DG +V +    A+  G IK   +     +   + 
Sbjct: 240 EDSISKMSVAPDS-------------DGQLVVNETNIAITSGNIKGSQEALTE-IDTKKQ 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +L+++A     + +E     G      G+      +  D      +++ I  +    +  
Sbjct: 286 ELNDIAFTFATAMNEVHSDGG-----AGIPFFTLGEGGDYAASIQVNKEILDDVSKINAG 340

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             + D                      +      + +     +       T+     +S+
Sbjct: 341 KDINDV-VGGDGTRAQAIAALQNTKFGDPVDIKGDYDPDTMTIKNKEGGSTVAGSYNDSV 399

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +   +  S ++      + + +     +  GV++ EE++  I  + ++  ++++I   
Sbjct: 400 TQMGIVKQQSDNMVDSQGSLVSLLEARRDSVSGVSINEEVTNTIAYQSAFEANSRIISVV 459

Query: 469 DKMLQTLLE 477
            +ML TL+ 
Sbjct: 460 SEMLDTLIN 468


>gi|156976147|ref|YP_001447053.1| flagellar hook-associated protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527741|gb|ABU72826.1| hypothetical protein VIBHAR_04918 [Vibrio harveyi ATCC BAA-1116]
          Length = 457

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 150/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57
           N A +  N          +N+ N     Y R+  + T               V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANIITPGYSRQQALMTSVGDGKYNKLSPGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         +  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYSAGYTTAMSQIENTLG--ADGFSVSAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D   +    +S+    ++ +  VN  I
Sbjct: 123 PESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALSHANSLMANIAQVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RDVL+ ++S+I+ I T  + +  M V  + G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTRDVLIGELSQIVEIKTTDQPDGSMQVTLASGQPLVMGSDYGQLA 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            K +          +         +       GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AKPDPSDPYLADLSVEFASQSFVID---HSVGGKLGAINDYQTEVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +    PG  +                               L      
Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LTITDIS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  D++N      NK            +++L +     +G        
Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPVSV----TGYGSLSLNDAFTAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|153837083|ref|ZP_01989750.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ3810]
 gi|149749671|gb|EDM60416.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ3810]
          Length = 457

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/481 (14%), Positives = 152/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +             S   V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYAAGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT  + +     D + +    + +    +S +  VN  I
Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRTAALIHANSLMSNIAHVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D R+ L+ ++S++I + T  + +  M V    G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTREKLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTDVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       + +   G  + +   D                         L      
Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  +++    D  NK            +V+L +   + +G        
Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|290474980|ref|YP_003467864.1| flagellar hook-filament junction protein 1 [Xenorhabdus bovienii
           SS-2004]
 gi|289174297|emb|CBJ81087.1| flagellar biosynthesis; hook-filament junction protein 1
           [Xenorhabdus bovienii SS-2004]
          Length = 546

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/548 (14%), Positives = 174/548 (31%), Gaps = 73/548 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS  ++ N A +  N A      +  NI N+ N  Y R+ T+ T +             V
Sbjct: 1   MS-NSLMNTAMSGINAAQVAMGVVGNNIANSKNVGYNRQTTVLTQNNGTLSPAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +   E     ++   +  +                 + AD   + S ++ I +   S
Sbjct: 60  AVSSINREYSEFINQQHSSAQTKHAALTAYNQQITKINDLLAD--KDTSLSNSIEEFFKS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L +   N  +     TV+  AE +V  F  +   +++I    + +IE     + ++  E+
Sbjct: 118 LGAAESNAEDSAARTTVLGKAEGLVSRFKEADEFLRQIDNSINSQIEQNAREINKYAEEV 177

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N+ I     +   +    LD+RD  + K+++++ ++   ++     V    G +L  
Sbjct: 178 ATLNNEITRMRGTGTGEPLALLDKRDEAVNKLNQLVDVNVTQQDGGVYNVSFGGGMSLVS 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S   +  +       V         + +G +   LQ+R  VV   +NQ
Sbjct: 238 GSKSYRLEAISSSTDSSRITLGYNNGTVGTKEIDERFISQGTLGGALQVRREVVDSSRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG---------------I 334
           L+++A V+   F++      + +  PG+   +  K                        +
Sbjct: 298 LNQLALVMADQFNQVQNGGFDLKGKPGVDFFNFTKPDVISNSNNKGTADIKVEYADTTKV 357

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP---------------------- 372
             +         +    R     +     N   L                          
Sbjct: 358 KNSDYTLKYEGGDWKVQRVSDKAAVPVTKNGNALEFDGLKVEIDAAHSQDHDTYTLKTVS 417

Query: 373 ----DLINHYCDSFNKNFIFDPVAG------------------INTNVTLLEYARNSIGW 410
                L  +  DS       D  AG                  I+   +      + +  
Sbjct: 418 NVVATLEVNLQDSSQLATAGDKDAGPSDNRNAKKFLALQDQRLIDGKSSFAGAYASLVSQ 477

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +++         + + +  +  +  GVN+ EE   + +++Q Y  + ++I     
Sbjct: 478 VGSKANEAQVSVETQGHIVDKLYATRESISGVNMDEEYGAMQRLQQYYLANARVIQTAAT 537

Query: 471 MLQTLLEG 478
           +   +L  
Sbjct: 538 LFDAILGI 545


>gi|319406995|emb|CBI80632.1| Flagellar hook-associated protein FlgK [Bartonella sp. 1-1C]
          Length = 456

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/481 (23%), Positives = 218/481 (45%), Gaps = 26/481 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N A+N     + +  ++ RN+  A + NY RR +     P     V  R ++ 
Sbjct: 1   MSLNLALNSARNSLKATTGRLDTVSRNVVKAGDPNYTRRTSYLEAGPGGAVHVVVRRDSD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S       L +       +   D ++NSP+  + + + +L+ Y+ +  +
Sbjct: 61  IHLLNNYLVKASEAAAAGSLSNGLNRLSDIYGSDRFSNSPSKLLGEFQKALQLYANDPQQ 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G   +D A ++ +  N  +RE++K+  D + +I+  +  +   L +   ++  +  +
Sbjct: 121 RSNGDAAVDRARDLAKGLNAGSREIEKLYNDVNSDIQDSVDYINDLLQKFHELDQLVVRE 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             ++ D   ++DQRD +L+++S+ IGI+T+  ++  M +Y  DG+TL++ +PR ++F+  
Sbjct: 181 RNARRDDSVYMDQRDAVLKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKMPRTVSFQFS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            S         IFIDGV +  +        G +  LL++RD ++P +Q QLDEMA  L+ 
Sbjct: 241 TSLPSGISGKQIFIDGVPLGHSSFIDPNGGGNLGGLLKLRDDIIPQYQRQLDEMANALMQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F     +  +     G   A                               R   +   
Sbjct: 301 MFLGPPSLFLDGNQPSGQIGALEGLAG-------------------------RIQLNPIF 335

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                      + D +    DSFN+   F    G++   +++++ +NS+GWL+  RS++ 
Sbjct: 336 DSKTEGGGPEHFGDKLQELVDSFNEKQKFGTGTGLDPEQSIMDFGKNSVGWLQGLRSNAD 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +F H +E+ SN  GVN  +EL+ ++++EQ+Y  ++++I    KML  LL  V
Sbjct: 396 KEARYKGTMFLHAAEALSNATGVNTDDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455

Query: 480 K 480
           +
Sbjct: 456 R 456


>gi|163803175|ref|ZP_02197058.1| putative flagellar hook-associated protein [Vibrio sp. AND4]
 gi|159173075|gb|EDP57908.1| putative flagellar hook-associated protein [Vibrio sp. AND4]
          Length = 457

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/481 (14%), Positives = 149/481 (30%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGYSRQQALMASVGDGKYNKLSPGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         +     E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYSAGYVTAMDQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +++ +E + + FNT    +     D   +    +S+    ++ +  VN  I
Sbjct: 123 PESIPYRQQIVNESEALARRFNTLTESLHNQHKDMSDQRNAALSHANSLMANIAQVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RD+L+ ++S+I+ I T  +++  M V  S G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTRDLLIGELSQIVEIKTTDQSDGSMQVTLSSGQPLVMGGDYGQLT 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            K N          +         +       GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AKPNPSDPYLADLSVDFASQSFIID---HSVGGKLGAINDYQTQVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +     G  +                               L      
Sbjct: 300 ADEYNAVLATGQDLNGNSGKPLFSYDPANPAAS--------------------LTITNIG 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  D++N      NK            +++L +     +G        
Sbjct: 340 AEELAFSSDGTPGNADVLNDLIQLSNKPISV----TGYGSLSLNDAFTAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 AEADYEAKAAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|254227989|ref|ZP_04921419.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
 gi|151939485|gb|EDN58313.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
          Length = 457

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 144/481 (29%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57
           N A +             +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLIKQTWSTNSMAAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT    +     D   +    +++    +  +  VN  +
Sbjct: 123 RESIPYRQQIINESEALARRFNTLTESLHNQHKDMSDQRNAALNHANSLMENIAKVNKQL 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S+ I I T  + +  + V  + G  L          
Sbjct: 183 VEMQGTGGNPSQLMDERDKLIGELSQTIEIRTTEQPDGSVQVTLTSGQPLVMGTDHGKLA 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  L++MA+ L
Sbjct: 243 AVPDPSDPYVADLHVTFSSQSFAIGDS---LGGKLGAINDYQTDVLKPNQLALNDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       +    PG  +                               L      
Sbjct: 300 ADEYNAVLATGQDLNGNPGKPLFSYDPANPAAS--------------------LDITELT 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  ++     G  D++    +  NK         +    +L +   + +G        
Sbjct: 340 PGELAFSSDGTPGNADVLQSLINLSNKPVSVTGYGFV----SLNDAFSSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLAMNKQAHAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|260899395|ref|ZP_05907790.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ4037]
 gi|308109296|gb|EFO46836.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ4037]
          Length = 457

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/481 (14%), Positives = 153/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +             S   V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYAAGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT  + +     D + +    +++    +S +  VN  I
Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRTAALTHANSLMSNIAHVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D R+ L+ ++S++I + T  + +  M V    G  L          
Sbjct: 183 VEMQGTGGNPAQLMDTREKLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTDVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       + +   G  + +   D                         L      
Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  +++    D  NK            +V+L +   + +G        
Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|260767929|ref|ZP_05876863.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP
           102972]
 gi|260615959|gb|EEX41144.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP
           102972]
 gi|315179632|gb|ADT86546.1| flagellar hook-associated protein [Vibrio furnissii NCTC 11218]
          Length = 457

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/481 (13%), Positives = 152/481 (31%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRS 57
           N A +  N          +N+ N +   Y R+  +                 V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVANINTPGYSRQQALMASVGGAKYDNLSAGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   +  S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTGSVASYASRYTSSMSYLENTLG--ADGFSLSAGLDNLFAALHDATSK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                L + +I+ AE + + FNT    +     D + +    ++     ++ +  VN  I
Sbjct: 123 PESVPLRQQIINEAEALSRRFNTLTESMYNQHKDMNDQRTAAVAQANSVMANIAEVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D RD L+ ++++I+ + T  + +  M V  + G  L          
Sbjct: 183 VELKGTGGNPAQLMDTRDALVGELAKIVEVKTTDQADGSMQVTLTSGQPLVMGSEHGTLK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +       +  +       +         G++ A+ + +  V+  +   L++MA+ +
Sbjct: 243 AIPDPSDAYLATMQVEFGKQSFAIPGD---LGGELGAINEYQTDVLKPYMTALNDMAQSM 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             SF+ +  +  +   +PG  +                             S L      
Sbjct: 300 ADSFNTELALGLDLNGLPGKALFSYDPANP--------------------SSSLTITDIT 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   +     G  D +       N+ F          +++L +     +G +      
Sbjct: 340 PNELALSGDGNPGNSDNLTALIAISNQAFSISGF----GSLSLNDAFTGMVGEVAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADSDYQAKNSMNEQAVAARDNISAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|110677962|ref|YP_680969.1| flagellar hook-associated protein FlgK [Roseobacter denitrificans
           OCh 114]
 gi|109454078|gb|ABG30283.1| flagellar hook-associated protein FlgK [Roseobacter denitrificans
           OCh 114]
          Length = 481

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 96/486 (19%), Positives = 180/486 (37%), Gaps = 17/486 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MS+    + A      A +    I  N+ NA    Y  R+   + S    V +       
Sbjct: 1   MSISGALSNAMTGLRAAGRTSEVISANLANAMTPGYGVRNLSLSSSQLGGVAIDGVMRNV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L    ++ G       F    E +       NS    +++   +L + +    
Sbjct: 61  DPSLLADLRLADASFGNANNRTKFLNDFENLLGTPEEANSLAGRMAEFERTLITAASRPD 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                 +V+D A ++    + ++  VQ+ R+DAD+ I+++I  L   L  +  +N  I  
Sbjct: 121 APERLNSVVDAARDIATLISKASDGVQQARSDADRAIQVQIDRLNTSLQSVKELNSQITR 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++  DA    D R  ++ +I+ I+ +  + R+N  + +Y++ G  L +    +I F  
Sbjct: 181 TISTGSDASALFDNRQAIVDEINAIVPVRLVPRDNGQIALYSTGGAILIDGGVAEIEFNA 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVP------KGKIKALLQIRDSVVPIFQNQLDEM 293
           +N  T         + G+ V+               G + A  +IRD +    Q QLD  
Sbjct: 241 VNQVTPFMTLGGGTLSGLSVNGYPVRTDSARGALGGGTLGAHFEIRDELGTSAQTQLDAF 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIAD---GIKDLDNKLCQGISETICVNPQYRSNPSF 350
           AR LI  F +    A  +   PG+F           +  L   +S    V+ +       
Sbjct: 301 ARDLIERFQDPAVDASLAVGDPGIFTDAGLAFDPVNEIGLSARLSVNAAVDERQGGESWR 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +RD                G   LI    D+ +               + +         
Sbjct: 361 IRD------GVNALTPGDVGDARLIQALSDTLSAKRAPASGDFGAGAFSAMNLISTFTSQ 414

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +  +RS +      +   F+ +++      GV+  +EL  L+ VEQ+Y  + ++I   D+
Sbjct: 415 VGADRSRAEQTLSFASSQFDELTQQVLAN-GVDSDQELQRLLIVEQAYAANARMIEAADE 473

Query: 471 MLQTLL 476
           M+QT+L
Sbjct: 474 MMQTIL 479


>gi|126697802|ref|YP_001086699.1| putative flagellar hook-associated protein [Clostridium difficile
           630]
 gi|115249239|emb|CAJ67052.1| Flagellar hook-associated protein FlgK (or HAP1) [Clostridium
           difficile]
          Length = 436

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 79/495 (15%), Positives = 172/495 (34%), Gaps = 79/495 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++ N A +  N   +   +I  NI N D   Y R+ T    +               
Sbjct: 3   GLFSILNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIGRG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V        + +D    A +   G       +    E +  ++  +   +  I
Sbjct: 63  QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYYNTIETIL-NEPSDYGISAGI 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                  ES SK+++ D     V++NA  +    + S +++ K++ D D  I+ EI  + 
Sbjct: 122 DDFFKGWESLSKDINSDNKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L  L  +N +I   + S    +D LD+RD +L  +S  + +      N          
Sbjct: 182 DMLKSLEDLNKSIDIISGSGSTPNDLLDERDRILDNLSFKLDLENSDVKNMLSD------ 235

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                                      + ++ +  +         G ++ L ++    + 
Sbjct: 236 -------------------------GKLELNELKNADGTWKTGISGTLQGLFEMH-GKID 269

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            +++ L +++  L    ++    +              ++D          + I VNP  
Sbjct: 270 TYKSDLKDVSDGLAKQINDVYNSSAGIT----------VRDFFITSNVAGEDIIKVNPAI 319

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +SN + L+     + K                    +  K+   D         T+ ++ 
Sbjct: 320 KSNSNELKLTTEEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHY 360

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +     +  +    +   +  + + N++  S  +  GV+L EE++ L+KV++SY  S K+
Sbjct: 361 KAFAESVGLDSQKVNQDEVNQRKIINNVDNSRMSVSGVSLDEEMTELMKVQRSYQASAKV 420

Query: 465 IMFTDKMLQTLLEGV 479
           +    ++L  ++ G+
Sbjct: 421 MSTAVQLLDVVINGI 435


>gi|157147096|ref|YP_001454415.1| flagellar hook-associated protein FlgK [Citrobacter koseri ATCC
           BAA-895]
 gi|157084301|gb|ABV13979.1| hypothetical protein CKO_02873 [Citrobacter koseri ATCC BAA-895]
          Length = 461

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/488 (13%), Positives = 148/488 (30%), Gaps = 38/488 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           MS+    N A +    A         NI N     Y R+  + +           +   V
Sbjct: 1   MSM---INIAFSGLQAAQVGMNVTSMNIANLLTPGYSRQGIIQSSIGPMGEAGFTAGNGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V + R  +       +   +S          +    E +   D  + S  + +     +
Sbjct: 58  QVDSIRRISSQYLVNQVWQTNSKASYFETGNQYIGALEQVIGTD--STSLGNGLDDFVSA 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L + ++      L + +I+ A  +   FN     +   +   + +    +  +    + +
Sbjct: 116 LSALTQTPESPALRQQLINQAGALATRFNNVNNFISSQKESINTQRNAMVDQINTLSTSI 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
              N  I    ++  ++    DQRD L++++S +  +      ++   V  ++G  L   
Sbjct: 176 ADYNKKITDMESTGGNSSVLRDQRDELVKQLSTLADVKVTDDGSSGYTVSMANGQPLVSG 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     ++       N         S    +    G++ AL       +   ++ +
Sbjct: 236 KVAGQLSAGQDA-----NGNSTLTLKFSTSEFTLNPSAGGQLGALYDYETGTLQQMKDSV 290

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             MA  +   F+++     +     G  +          + Q                  
Sbjct: 291 QGMAESVAKLFNDQLAKGYDLNGNSGKPLFTFDPSNPAGMLQVT--------------DL 336

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             +  ++S     +   + G  D +    +  N+      +     N++L E A   I  
Sbjct: 337 KPEELALSGIQADDGTGVPGNGDNLKALIELKNQKTDIPGL----GNMSLSEGAAAIIST 392

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +      S      +  V +       N   VN  EE   L    Q+Y  + K+I   ++
Sbjct: 393 IGIASKQSKTEMEAASTVRDQAQNQRDNLSAVNQDEEAINLQIYMQAYQSNMKVISTGNQ 452

Query: 471 MLQTLLEG 478
           +   LL  
Sbjct: 453 IFSDLLGM 460


>gi|91794989|ref|YP_564640.1| flagellar hook-associated protein [Shewanella denitrificans OS217]
 gi|91716991|gb|ABE56917.1| Flagellar hook-associated protein [Shewanella denitrificans OS217]
          Length = 457

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/481 (14%), Positives = 157/481 (32%), Gaps = 33/481 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV-------VTQRS 57
            + N  ++    ++    +   N+ NA    Y R+  MT+                  R 
Sbjct: 2   NMLNIGKSGLLASAASLNATSNNVANAMVAGYSRQQVMTSSVGGGAYGGGAGVYVDGVRR 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +       L   +S +G  ++  S+    E +       N  +  +  +  ++ S  + 
Sbjct: 62  ISDQYEVAQLWKTNSDVGFSKIQTSYLGQAEQVFG--ADGNDISKGLGLVFAAMNSAMEQ 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +     + +I+  + +VQ  ++    +   R   + ++   +  +   L  ++  N  I
Sbjct: 120 PNLIAHRQGIINETKALVQRVHSINESLSSQREQINGQLGSSVKLVNTQLDIISKFNKDI 179

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           +  +A         D RD  + +++ +I I  +      + +    G  L     +    
Sbjct: 180 RAASAIGTVPAALQDGRDAAINELASLIDIRVVEDAQGLVNISLEKGEPLIAGNTKATLS 239

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +     + +  I       S         G + +L+  RD+ +   Q  +DE+A+ L
Sbjct: 240 TVPDPLNPANSNISIQF---GKSQFVFENSVGGSMGSLMTYRDTQLANSQTYIDELAQHL 296

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+    +  +      +     +  ++      IS                      
Sbjct: 297 ANEFNNTLALGTDLSGAAPVKNFLSVNSVNPAGSLAISSGFTPEDLALG----------- 345

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +    G    +       +K+  F     +   V+L E   + +G L      
Sbjct: 346 -------LDGTQGDNSNLKALAALASKSLGF---TSLGGAVSLGESFSSIVGALGSASRQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +  +       +++T GVN  EE   LI  +Q+Y  + K+I   +++ QT+L 
Sbjct: 396 AKADAKTNTDLHTEAKSQWASTSGVNPDEEGVNLIVYQQAYQANAKVITTAERLFQTVLN 455

Query: 478 G 478
            
Sbjct: 456 S 456


>gi|319403979|emb|CBI77567.1| Flagellar hook-associated protein FlgK [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 456

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/481 (23%), Positives = 216/481 (44%), Gaps = 26/481 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N A+N     + +  ++ RN+  A + NY RR +     P     V  R +  
Sbjct: 1   MSLNLALNSARNSLKATTGRLDTVSRNVVKAGDPNYTRRTSYLESGPGGAVHVVVRRDGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S       L +       +   D ++NSP+  + + + +L+ Y+ +  +
Sbjct: 61  IHLLNNYLVKASEAAAAGSLSNGLNRLSDIYGSDRFSNSPSKLLGEFQKALQLYANDPQQ 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G   +D A ++ +  N  +RE++K   D + +I+  +  +   L +   ++  +  +
Sbjct: 121 RSNGDAAVDRARDLAKGLNAGSREIEKSYNDVNSDIQDSVDYINDLLQKFHELDQLVARE 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +  D   ++DQRD +L+++S+ IGI+T+  ++  M +Y  DG+TL++ +PR ++F+  
Sbjct: 181 RNANRDDSVYMDQRDAILKELSQEIGINTVNHSDGTMSIYGMDGSTLYDKMPRTVSFQFS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            S         IFIDGV +  +        G +  LL++RD ++P +Q QLDE+A  L+ 
Sbjct: 241 TSLPSGISGKQIFIDGVPLGHSSFIDPNGGGNLGGLLKLRDDIIPQYQKQLDEIANALMQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F     +  + E   G   A                               R   +   
Sbjct: 301 MFPGPPSLFLDGEQPSGQIGALEGLAG-------------------------RIQLNPIF 335

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                      + D +    DSFN+   F    G++   +++++ +NS+GWL+  RS++ 
Sbjct: 336 DSKTEGGGPEHFGDKLQELVDSFNEKQKFGTGTGLDLEQSIMDFGKNSVGWLQGLRSNAD 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +F H +E+ SN  GVN  +EL+ ++++EQ+Y  ++++I    KML  LL  V
Sbjct: 396 KEARYKGTMFLHAAEALSNATGVNTDDELALMLQLEQTYGATSRIISTVGKMLDDLLAAV 455

Query: 480 K 480
           +
Sbjct: 456 R 456


>gi|188579926|ref|YP_001923371.1| flagellar hook-associated protein FlgK [Methylobacterium populi
           BJ001]
 gi|179343424|gb|ACB78836.1| flagellar hook-associated protein FlgK [Methylobacterium populi
           BJ001]
          Length = 489

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 128/489 (26%), Positives = 206/489 (42%), Gaps = 9/489 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L    N A+      S Q A   RN+  A++  Y R+             VT      
Sbjct: 1   MGLTLALNTARASLLANSNQIAVSARNVAGANDPGYSRKIATLVAGSAGGATVTITRAGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS   +   L +          D    ++P   +S  + +L++ +     
Sbjct: 61  PALYARTLTASSDAARGDALLTGLTKLAQTIGDTDDTSAPAARLSIFQAALQAAANQPDN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  ++ A+ +  + N +A  V  +RA+AD  I   +  +   L      N A+   
Sbjct: 121 TQLARDAVEAAKALAGSLNQAADTVHAVRAEADAGIGDAVGRINDLLGRFDAANRAVVKA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   DA D LD RD +L  +S+ IG++ + R   DM +YT  G TLFE  PR + F   
Sbjct: 181 TALGGDATDALDDRDRILTALSQEIGLTAVSREGGDMALYTDGGVTLFERGPRTVAFSPT 240

Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++T  +    + IDGV V+ +     +  G+I  L  +RD     ++ QLD +A  LI 
Sbjct: 241 ATFTAGTVGGSVTIDGVPVTGTASPMPLTSGRIAGLAALRDGTAVAYEAQLDAVAGGLIA 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL-------CQGISETICVNPQYRSNPSFLR 352
           +F+E D    +     GLF A G   L              ++    V+P    N + LR
Sbjct: 301 AFAESDTSLIDDGPRAGLFTAGGSALLPTASAAGRTGLAASLAINAAVDPNRGGNLALLR 360

Query: 353 DGGSVSKKFLW-NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            GG     +        A Y   +     + + +   DP  G+ T  +L E A  S GWL
Sbjct: 361 SGGMNGSDYDDPAAGGDAAYAGRLRGLVTALSSSKPVDPALGLGTASSLPELAAASAGWL 420

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E  R D+       + +    +E+ SN  GVN  +E +  +++E+SY+ S KLI   + +
Sbjct: 421 EAQRKDAATGAAYQKTLLTRANEALSNVAGVNGDDETALALQLERSYSASAKLIAVVNDL 480

Query: 472 LQTLLEGVK 480
           L+TLL+ V+
Sbjct: 481 LKTLLDAVR 489


>gi|168333624|ref|ZP_02691884.1| flagellar hook-associated protein FlgK [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 544

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 79/540 (14%), Positives = 161/540 (29%), Gaps = 65/540 (12%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTV 52
                 A +    A Q  +    NI N +   Y R++                     TV
Sbjct: 3   FGEITVAMSGLFAAQQGLSVTSSNINNINTPGYSRQEIKQEAWNPLPGGGVGMIGTGTTV 62

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      D+ +  +S  +G+  + Q   A+ E +   +  +   T   +   + L+
Sbjct: 63  TGVERVRDPFLDQKIWKYSDMLGEYSIKQEQTAIIENIFG-EPKDEGFTKIYTNFFNGLD 121

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             SK+ +       +          +N  A  + + ++D + ++++ +  +    S +  
Sbjct: 122 DLSKDPNTTEKASALRQYMIGFADYYNEMASGLSETQSDINAQLKITVDQINLMASRVQS 181

Query: 173 VNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-------DG 224
           +N  I+         A++  DQRD  + ++S+ + I       +              +G
Sbjct: 182 LNGQIQNYELHGGKIANELRDQRDHCVDQLSQFVNIEAKEVEMHKPDGSVEKQFQVYVNG 241

Query: 225 TTLFETVP-RDINFEKMNSYTVTSESNPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            TL +    R +  E   +     + + ++  +       N  S    GK+K LL +RD 
Sbjct: 242 QTLVDHKDIRLLEVEPRETKKHPRDIDGLYDIVWDDKAVFNTTSEYFSGKLKGLLDVRDG 301

Query: 282 ---------------VVPIFQNQLDEMARVLIGSFSEKDPIA------------GNSENV 314
                           +P FQ++LD   R      +                   +    
Sbjct: 302 QGAGLDPITHKPVYTGIPYFQDRLDRFVRDFSKELNRIYNQGDIIDANGNREQILDDLGN 361

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN---------- 364
           P   +     +  + +          N     N S   +     K    N          
Sbjct: 362 PVYALFSYRDEDTSAIIASNDPNFDYNKMTAENFSTSLEIIESDKNIRTNYEHRMDVIND 421

Query: 365 -----VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  N   Y +      D             + +  T  +Y  +    +  N S++ 
Sbjct: 422 PKLDPPYNSEIYYNPNPGNNDLLLDLMDQQNNQDVFSQGTPTDYMISIFSAMGVNASEAQ 481

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   + + I        GV+  EE   LIK   +Y IS K++   D +    +  +
Sbjct: 482 MYAKTQSNIISEIENQRMAVSGVDNNEEFMNLIKYNMAYQISAKVMSTLDNIYDITINRM 541


>gi|284041493|ref|YP_003391833.1| flagellar hook-associated protein FlgK [Conexibacter woesei DSM
           14684]
 gi|283945714|gb|ADB48458.1| flagellar hook-associated protein FlgK [Conexibacter woesei DSM
           14684]
          Length = 443

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 65/500 (13%), Positives = 144/500 (28%), Gaps = 91/500 (18%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       +        Q   +   N+ NA+   + R++ +                   
Sbjct: 4   SSFMGLQTSLRGLIAHQQALNTTGHNVANANTPGFSRQEAIFGAMSALRLPTNSGTTGLG 63

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V+  R    +  D      +  +G            E+    +  ++     
Sbjct: 64  AQLGTGVDVLGIRRIRDSFLDLQFRGTNMQLGDASARTQSLEQVELSFG-EPSSSGINAL 122

Query: 104 ISKLRDSLESYSKNL-SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD---KEIELE 159
           + +  D+  + +            VI+ A  +   F T   ++ ++ A A     EI   
Sbjct: 123 LGRFWDAWSALASAPEEGSAARTAVIEMANTLAGAFQTVHAQLTRVAAQAQGKYDEITGP 182

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
             ++  +  EL  +N  I          +D +D+RD+L+ ++SE+  +S     +  + V
Sbjct: 183 AGDVDIWAQELAQLNRTIAHAVTVGQVPNDLMDRRDLLIDRLSELSQVSVTDVGDGSVRV 242

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
               G TL +                              +  Q      GK+ AL  + 
Sbjct: 243 -EFGGVTLVDPAAA-----------------------GGYTWPQTLTSRDGKLGALRDLA 278

Query: 280 DSVVP--IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
               P   F+++LD +A  L+   +      G  +                         
Sbjct: 279 SPTGPALSFRDRLDTVAADLVARVNALHRAPGGVDFFAP--------------------- 317

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                                     +  ++      +     +               N
Sbjct: 318 ---------------------AGTTADRISVVATAATVVAGSTADRGRNDVANAIAQLRN 356

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            ++       +  +      +       Q + ++I +   +  GV+  EE++ +I+ ++ 
Sbjct: 357 GSINRTYSALVSEVGSVVRRASSAEAIQQSLVDNIDDRRQSVQGVSPDEEMTNMIRFQRG 416

Query: 458 YNISNKLIMFTDKMLQTLLE 477
           Y  S + +   D+ML TL+ 
Sbjct: 417 YQASARTMSTLDEMLDTLIN 436


>gi|326792656|ref|YP_004310477.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM
           5427]
 gi|326543420|gb|ADZ85279.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM
           5427]
          Length = 559

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 86/560 (15%), Positives = 186/560 (33%), Gaps = 82/560 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------I 45
           MS ++   KA +    A +       N+ N + + Y R+  + +                
Sbjct: 1   MSSISSITKAVSGLAAAQKGLQVTGHNLSNVNTEGYTRQQLLQSESDYLVIGNRGSRYLQ 60

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               VT    R     + DK L   +S +   +   S  A  E +  D+ Y    T  ++
Sbjct: 61  VGLGVTQDEIRQIRNELADKRLRTENSVLTYYQTQNSTIAEIEAIL-DEPYGEGVTKLLN 119

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                 +  +   +     ++ I  A  +++  N  +  + K +A+ +KE+   ++ + +
Sbjct: 120 NFWSQTQKLNTTPNGVEERQSFISAANVLIKKINDISDSLDKFQANTNKEVISSVNRINQ 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            +  +   ND I     +  +A+D+ DQR+ LL ++SE   ++      + +VV   +  
Sbjct: 180 IIEGIKEYNDIISRAEVNGDNANDYRDQRNNLLDELSEYGKVTYHEEVGSKVVVKFENHL 239

Query: 226 TLFETVPRDINFEKMNSYT----VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            +       +  E+ ++ +             +     +         GK+KALL  R +
Sbjct: 240 VVDGPFTATMKLEEADTKSVFVKPVWSDTNSDVYRFDETVTSVKGNDTGKLKALLISRGN 299

Query: 282 ---------------------------VVPIFQNQLDEMARVLIGSFSEKDPIA--GNSE 312
                                      ++P  Q  L +   VL+ + +        G+ E
Sbjct: 300 NYVTEDTKWEDIAFNDNFSVDEPGNSFIIPKIQKMLSDFTGVLVETVNSCFDGTGIGSHE 359

Query: 313 NVPGLFIADGIKDL---------------DNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              G+ +   I                  D    +   E      +  +N +       V
Sbjct: 360 GKAGVPVFVPIISTQEYEAAKKNLETVLNDPTSTEDQKEAAQQAYEKAANKAMTTGNIQV 419

Query: 358 SKKFLWNV-------------KNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-----VT 399
           + + L N               N  G    +  +   + K   +              V+
Sbjct: 420 NPELLANGGYNKLGTVSTEGASNNVGDSSKVTEFLSEWGKTREWYSDRSEKGAPNYKKVS 479

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           ++ +    +  +  + S+   +    Q    +I        GV+  EE + ++K + +YN
Sbjct: 480 IISFYSEFVTDIGTDGSNYSAVAKSRQTSILNIQNERQAMGGVSQDEEFANMLKYQYAYN 539

Query: 460 ISNKLIMFTDKMLQTLLEGV 479
            S ++I   D ML T++  +
Sbjct: 540 ASARMITMLDGMLDTIINKM 559


>gi|114762176|ref|ZP_01441644.1| flagellar hook-associated protein K [Pelagibaca bermudensis
           HTCC2601]
 gi|114545200|gb|EAU48203.1| flagellar hook-associated protein K [Roseovarius sp. HTCC2601]
          Length = 486

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 184/491 (37%), Gaps = 18/491 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQR 56
           MSL    + A +     S+    +  NI NA  ++Y RR    +     +   V +    
Sbjct: 1   MSLSGALSNALSGLTANSRSAGLVASNIANATTESYGRRTLDLSARTLGNSGGVWIDGVT 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                          +  G    +QSF +  E +        S     +    +L S + 
Sbjct: 61  RNVDPAVLADRRLSDAQSGFADEMQSFASRVETLLGPTDTAGSLVGRYAAFETALLSAAT 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + + D   K V   AE+     N  + E+Q  R DAD+ I  +++     L  ++ +N A
Sbjct: 121 DPASDQRLKLVAQRAEDFTTMLNQISVEIQDARTDADRSIGSQVTRFNTALGRVSELNTA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET----VP 232
           I        D    +DQR  ++  +S+I+ + ++ R N  + +Y + GT L +      P
Sbjct: 181 ISDSLLRGGDPASLMDQRQRVIDDVSDIVPLRSVARENGAVALYAASGTVLLDPDFHSDP 240

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +I+F   +  T          + + ++G  V+S+   A+  G + A  QIRD V P  Q
Sbjct: 241 VEISFTPQDPVTADLSIGAGTLSGLEVNGKAVNSSNDGALGGGTLGAQFQIRDIVAPDMQ 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             +D +AR LI  F+   P +      PGLF   G                  +    + 
Sbjct: 301 AAIDGIARDLIERFAPGGPDSTLGATDPGLFTDAGTAFDPLDETGLAGRIALNSLVDPAG 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
               R            V+   G   L+  Y D+ +        A  +   +  ++  + 
Sbjct: 361 SGTWRLR----DGLGAAVQGPVGEARLLRGYSDALDALMSPGSAALGSGAQSFAQHVADF 416

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +   R  +      S      + E   +  GV+   EL  L+++EQ Y  + ++I  
Sbjct: 417 HAAIAAARLRADGEQSFSSAQNTALKELELSK-GVDTDAELQELLRIEQHYAANARVITT 475

Query: 468 TDKMLQTLLEG 478
            D+++QTL+  
Sbjct: 476 VDELMQTLMNI 486


>gi|307318930|ref|ZP_07598361.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti
           AK83]
 gi|306895344|gb|EFN26099.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti
           AK83]
          Length = 472

 Score =  196 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 244/481 (50%), Gaps = 10/481 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    AQ+  +  +QQ A++ +NI N+ N +Y RR  M   +P    VV+      
Sbjct: 1   MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQVVSIYRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K      S    Q  L S   + +     + Y +SP+ Y+S  R+SL++++     
Sbjct: 61  EALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQTFASTPGN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +  TV+ +A ++  + + ++  VQ +R D+DK+I  E++NL R L++    N+A++  
Sbjct: 121 ATIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETANNAVRQA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  DA   LD RD +L+++SE++GIST+ R NND V+YTS GT LFET+PR++ F   
Sbjct: 181 TAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSGGTVLFETLPREVTFAPK 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++Y  T   N IFIDGV ++   G     +GK+  LLQ+RD + P FQ+QLDEMAR L+ 
Sbjct: 241 SAYDATVTGNGIFIDGVPLAPGSGADTNAQGKLAGLLQLRDDIAPTFQSQLDEMARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F E                      +             ++    +  +          
Sbjct: 301 LFKE---------GGLPGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKANPFLLRDGGFN 351

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + N    AGY  L++ +  + + +  FD   G++   +++E+A +SIGW E+ RS + 
Sbjct: 352 GVVSNPDGNAGYTVLLDGFVTAMDGDMAFDGATGLDATSSIMEFAASSIGWFEQIRSGAS 411

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +     E+  +  GV++ EELS L+ +EQSY  S KLI   D M+ +LLE V
Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471

Query: 480 K 480
           +
Sbjct: 472 R 472


>gi|95929883|ref|ZP_01312624.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95134179|gb|EAT15837.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 552

 Score =  196 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/558 (14%), Positives = 181/558 (32%), Gaps = 86/558 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M L A  N  +     + +       NI N + + Y R++ +                 V
Sbjct: 1   MGLAAALNTGKTSLFASQKSIEVAGNNIANVNTEGYSRQNVVLGDIPSLEFGGFFVGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     E     ++ L   S  +G +    +  A  E + +    N      I +  D+
Sbjct: 61  RVNNIEREYDVFINQQLLDKSQELGTEDAKSTPLAELERVFSVGDEN--LATEIDRFFDA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  S N S ++    VI   E +  +FN+ AR++  +R++ +  +  EI ++   L+++
Sbjct: 119 WQELSTNPSGEVERDIVIQRGELLASSFNSLARDLDNVRSNINDTVASEIDDVNLKLNQI 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I+   A+   A+ F DQRD+LLQ+++  +G+ +    N  + +    G  L + 
Sbjct: 179 AELNTQIQNIEANGKSANSFRDQRDLLLQELTYTLGVQSYEEPNGAINIQLPGGLPLVQN 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                         +T     + ++    S         GK   L ++RD  +P  +  L
Sbjct: 239 GTALQLEATPRGEDLT-----LTLNIGESSFEVKGDNLGGKFNGLFELRDEFIPELKQNL 293

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY------ 344
           D  A  ++ + +         +   G+   +   +   +      +    +         
Sbjct: 294 DLTAYEMVQTVNSLHAQGVGLDGSTGVAFFNNPGNHTTQSYVDPDQATAFSAGDLSIEVD 353

Query: 345 ---------RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                      + + L D  + +   +    N       +         + +    + + 
Sbjct: 354 GVANTVAFAGGSLNDLADTINTAALGVTATVNEQDDGTFVMVLRPDNAGDSVQLDTSAVG 413

Query: 396 TN-----------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVV---------------- 428
            +             L+  +      +    S +   +  +  +                
Sbjct: 414 GSYEAPEFSMPNISDLIAVSIRDTSKVAAGNSSAPGDNTNALAISALKDEDTINGEDTFV 473

Query: 429 ---------------------------FNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
                                         +      +VGV+++EE+  LIK ++ +  S
Sbjct: 474 SFYGKMAASVGIEAGQNRLAQSGAEDSLTQLKNLRDGSVGVSIEEEMISLIKFQRGFEAS 533

Query: 462 NKLIMFTDKMLQTLLEGV 479
            KL+   D+++ T++   
Sbjct: 534 AKLLSTVDELMVTVINIK 551


>gi|310644334|ref|YP_003949093.1| flagellar hook-associated protein flgk [Paenibacillus polymyxa SC2]
 gi|309249285|gb|ADO58852.1| Flagellar hook-associated protein FlgK [Paenibacillus polymyxa SC2]
          Length = 522

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 156/519 (30%), Gaps = 47/519 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+      +    +   NI NA+ + Y R+                      
Sbjct: 3   STFHSIETAKRSLFTQTAALNTTGHNIANANTEGYTRQTVKMKASIPMEAYGINRSNVPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V         +   D      ++ +G   +  +     + +  ++  +      +
Sbjct: 63  QLGTGVEFDAIERIREKFLDSQYRGENTELGSWTIRSNTLDKLQQIM-NEPSDTGIRKVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                S    SK+         V +NA  +    N  ++++  + AD    +E + S L+
Sbjct: 122 DNFYKSWSDLSKDPESVTARTIVKENALALTDAMNHMSKQLSNLSADLTSNVEAKSSELQ 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD- 223
            +++ +  +N +I        +A+D  DQRD+++ KIS+I+ ++    +    V      
Sbjct: 182 SYVNSIADLNQSITKIEGLGDNANDLRDQRDLIVDKISKIVNVTVTDTDQGYNVNMGGQA 241

Query: 224 ---------------------GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
                                   L       + F +       +       + +   + 
Sbjct: 242 LVTGFEPTTGINGAFLQAAFASNDLQGGEVHGMIFSRDRFVADYTAQMDNLANTLATGNI 301

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG---NSENVPGLFI 319
             +      +     +           L     V +   +    +     + +    +  
Sbjct: 302 TVTLPKGSVLPEGTVLNGVTYTGTNRTLQSDLTVTVKGLNGLHQLGYTQEDKDANGNMVA 361

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                   N      +  I +N     NP+ +     V        + + G   L +   
Sbjct: 362 GKPFFVTSNNGGTITAGNITLNTAIVDNPNAIAASLRV-TGTAPTEELVKGNNTLASLMS 420

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +    NF            T+  +  + +G L     ++      S  + + +     + 
Sbjct: 421 NLKLSNFTSVST---GNTATIDSFFSSMVGQLGIEAQEATRQTQNSTALVSQVETMRQSV 477

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            GV+L EE+S +IK + +Y+ + + +   D++L  L+  
Sbjct: 478 SGVSLDEEMSNMIKFQHAYSAAARFMTTFDQLLDKLINS 516


>gi|270262395|ref|ZP_06190666.1| flagellar hook-associated protein FlgK [Serratia odorifera 4Rx13]
 gi|270043079|gb|EFA16172.1| flagellar hook-associated protein FlgK [Serratia odorifera 4Rx13]
          Length = 548

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/551 (14%), Positives = 176/551 (31%), Gaps = 77/551 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  N A    +++  NI N +   Y R+  +   +             V
Sbjct: 1   MS-NSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTAILAQNGGMSTMSGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV +   E        L    S  G Q     FE + ++ +      N+ +  +     +
Sbjct: 60  TVTSVNREYNQFITSQLRGAQSQAGAQN--AYFEKISQIDNLLASKTNTLSTNMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D   +TV+  A  +V  FN + + ++ + +  ++++      +  +  ++
Sbjct: 118 LQNLVSNAGDDAARQTVLGKANGLVNQFNNTDKYLRDMDSGVNQQLSDSAQQINSYSQQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I     S  + +  LDQRD L+  +++++G+    ++ +   V  ++G TL + 
Sbjct: 178 AKLNEEITRLRGSGGEPNALLDQRDQLVTDLNKVVGVQVTQQDGDAYTVSFANGLTLVQG 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      S   +  +   +  G   S      +  G +  +L+ R   +   +NQL
Sbjct: 238 NNAYQVAAVPTSGDPSRLTMG-YDRGNGASEIPEGQITGGSVSGVLKFRSESLDSARNQL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGI--------------------------- 323
            ++A  +  SF+++     +     G                                  
Sbjct: 297 GQLALAMADSFNQQHRAGFDLNGDAGTDFFSFGGARAVDNNRNTGDAALSVSYTDTSKVK 356

Query: 324 -------KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                   D  N     + + + VN    ++ +          K   +          + 
Sbjct: 357 ANDYRVEFDGSNWQVSRLPDNVKVNATAGTDAAGNPTLSFDGLKVGIDGTAQKNDSFTVK 416

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARN-----------------------------S 407
              D      +    +         +  R                               
Sbjct: 417 PVSDVAGSLKVAITDSANIAAAGKDDSGRGDNENAKKLLDLQTQKLVDGKATFSGAYASL 476

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    + +         +   +     +  GVNL EE   L++ +Q Y  ++K+I  
Sbjct: 477 VSSVGNQTASAKVTATSQGNIVKQLENQQQSISGVNLDEEYGELLRFQQYYMANSKVIQT 536

Query: 468 TDKMLQTLLEG 478
              +  TLL  
Sbjct: 537 ASTLFDTLLNI 547


>gi|126176150|ref|YP_001052299.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155]
 gi|125999355|gb|ABN63430.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155]
          Length = 457

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 160/485 (32%), Gaps = 36/485 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+    N  ++    +     +   N+ NA    Y R+  M +              V 
Sbjct: 1   MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +SA+G  ++  S+    E +   +   N+ +  + +L  +L S
Sbjct: 58  GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFGAE--GNNVSKGLDQLFAALNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +     + V++ A+ V Q  N     +   R   + ++   +  +   L+ +   
Sbjct: 116 SMEQPNLIAYRQGVLNEAKAVAQRVNAINDNIDSQRNQINGQLGSSVKEINSQLNIIASF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+  + +        D RD  +  ++ I+ I  +  +   + +  + G  L      
Sbjct: 176 NRDIQAASVTGTIPPALQDSRDAAIDDLAAILDIRVVEDSQGMVNISLARGEPLLTGNTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +     ++   I       + ++ +    G + ALL  RD  +   Q  +DE+
Sbjct: 236 AKLASAPDPANPKNDLVTIQFGSSQFNVDETA---GGSLGALLTYRDVQLADSQEYIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A +L   F+       +             +  +      ++     +            
Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGK------ 346

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    +       NK   F     + +N +L E   + +G L  
Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSNTSLAESFSSKVGQLGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      S  +       +++T GVN  EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAISFAKTSVDLQKDAQSQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451

Query: 474 TLLEG 478
           T+L  
Sbjct: 452 TMLSS 456


>gi|304412502|ref|ZP_07394108.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183]
 gi|307307161|ref|ZP_07586899.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175]
 gi|304349144|gb|EFM13556.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183]
 gi|306910400|gb|EFN40831.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175]
          Length = 457

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 161/485 (33%), Gaps = 36/485 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+    N  ++    +     +   N+ NA    Y R+  M +              V 
Sbjct: 1   MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +SA+G  ++  S+    E +   +   N+ +  + +L  +L S
Sbjct: 58  GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFGAE--GNNVSKGLDQLFAALNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +     + V++ A+ V Q  N     +   R   + ++   +  +   L+ +   
Sbjct: 116 SMEQPNLIAYRQGVLNEAKAVAQRVNAINDNIDSQRNQINGQLGSSVKEINSQLNIIASF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+  +A+        D RD  +  ++ I+ I  +  +   + +  + G  L      
Sbjct: 176 NRDIQAASATGTIPPALQDSRDAAIDDLAAILDIRVVEDSQGMVNISLARGEPLLTGNTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +     ++   I       + ++ +    G + ALL  RD  +   Q  +DE+
Sbjct: 236 AKLASAPDPANPKNDLVTIQFGSSQFNVDETA---GGSLGALLTYRDVQLADSQEYIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A +L   F+       +             +  +      ++     +            
Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGK------ 346

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    +       NK   F     + +N +L E   + +G L  
Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSNTSLAESFSSKVGQLGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      S  +       +++T GVN  EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAISFAKTSVDLQKDAQSQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451

Query: 474 TLLEG 478
           T+L  
Sbjct: 452 TMLSS 456


>gi|212709498|ref|ZP_03317626.1| hypothetical protein PROVALCAL_00540 [Providencia alcalifaciens DSM
           30120]
 gi|212687836|gb|EEB47364.1| hypothetical protein PROVALCAL_00540 [Providencia alcalifaciens DSM
           30120]
          Length = 546

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/547 (14%), Positives = 163/547 (29%), Gaps = 74/547 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           L  V N A +  N A    + I  N+ NA    Y R+  +   +                
Sbjct: 2   LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R E     +       +  G            + +  +D  +   +  I     +L+
Sbjct: 62  SHVRREFDEFVNAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIED--LSGSIGSFFTALD 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           S S + S+  L    +  +  +V  F  + R++Q++  D +++IE ++ ++  +  ++  
Sbjct: 120 SASSDASDKTLIDVFLGQSNALVSQFKEADRQLQEMERDINRQIENKVKDINIYAEKIAG 179

Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    + S  + +D LD RD L+ +++ +IG+  I + N +  V  ++G  L    
Sbjct: 180 LNQQIARVRSVSGSEPNDLLDVRDRLVNEVNSVIGVKVIEQ-NGNYNVTFANGLPLVTGE 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +      +S   +  S         V      A   G++  +L+ R  V+     +++
Sbjct: 239 KANRLEAMPSSKDDSRFSIGFVGANDQVREIPDEAFKGGELSGVLRSRQEVLDPAYQKIN 298

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-- 349
           ++A V    F+E      +S    G       K           +T         +    
Sbjct: 299 KLALVFATKFNEIHQKGFDSNGETGKDFFAIGKGSVVSNTFNTGKTDFDLSYSDVSQVTG 358

Query: 350 ----------------------------------------FLRDGGSVSKKFLWNVKNLA 369
                                                    +                  
Sbjct: 359 KNYEMRFDGGKWNVTRLPDGVEVKVDTSTPGSLKFEGIELKITTNNPNQGDTFVVKPMNG 418

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTN------------------VTLLEYARNSIGWL 411
              ++     DS          AG   N                   T  ++    +  +
Sbjct: 419 VINNMQTLVTDSAQFAKAGSKDAGPGDNENIKELVKLQDQKLIDGGSTFSDFYATLVNDV 478

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +         +            GVN+ EE   + K++Q +N + +++   D +
Sbjct: 479 GSRTKQAQIDSETQNKMTESFYRQEQEISGVNMNEESIQMQKIQQFFNANAQVLKTVDDL 538

Query: 472 LQTLLEG 478
              L+  
Sbjct: 539 FNALMRA 545


>gi|163735544|ref|ZP_02142976.1| flagellar hook-associated protein K [Roseobacter litoralis Och 149]
 gi|161391164|gb|EDQ15501.1| flagellar hook-associated protein K [Roseobacter litoralis Och 149]
          Length = 481

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/486 (19%), Positives = 178/486 (36%), Gaps = 17/486 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MS+    + A      A +    I  N+ NA    Y  R+   + S    V +       
Sbjct: 1   MSISGALSNAMTGLRAAGRTSEVISANLANAMTPGYGVRNLSLSSSQLGGVAIDGVMRSV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L    ++ G       F    E +       +S    +++   +L + +    
Sbjct: 61  DPSLLADLRLADASFGNATDRTKFLNDFENLLGTPDQADSLAGRMAEFETTLITAASRPD 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                  V+D A ++    + ++  VQ+ R+DAD+ I+++I  L   L  +  +N  I  
Sbjct: 121 APERLNGVVDAARDIANLISAASDGVQQARSDADRSIQVQIDRLNTSLQNVKELNSQITR 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++  DA    D R  ++ +I+ I+ +  + R+N  + +Y++ G  L +    +I F  
Sbjct: 181 TISTGSDASALFDSRQAIVDEINAIVPVRLVPRDNGQIALYSTGGAILLDGGVAEIEFNA 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVP------KGKIKALLQIRDSVVPIFQNQLDEM 293
           +N  T         + G+ V+               G + A  +IRD +    Q QLD  
Sbjct: 241 VNQVTPFMTLGNGTLSGLSVNGYPVRTDSARGTLGGGTLGAQFEIRDELGTSAQTQLDAF 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD---NKLCQGISETICVNPQYRSNPSF 350
           AR L+  F +       +   PG+F   G+         L   +     V+ +       
Sbjct: 301 ARDLVERFQDPAVDPSLAAGDPGIFTDAGVAFDPLNEVGLSARLGINADVDERQGGESWR 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +RD                G   LI    D+               + + +         
Sbjct: 361 IRD------GVNAVTPGDVGDARLIQSLSDTLTAKRTPASGEFGAGSFSAMNLISTLTSQ 414

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +  +RS +      +   F+ +++      GV+  +EL  L+ VEQ+Y  + ++I   D+
Sbjct: 415 VGSDRSRAEQSLSFASSQFDELTQQILAN-GVDSDQELQRLLIVEQAYAANVRMIEAADE 473

Query: 471 MLQTLL 476
           M+QT+L
Sbjct: 474 MMQTIL 479


>gi|10998529|gb|AAG25959.1|AF300968_1 FlgK [Sinorhizobium meliloti]
          Length = 472

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 246/481 (51%), Gaps = 10/481 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    AQ+  +  +QQ A++ +NI N+ N +Y RR  M   +P    VV+      
Sbjct: 1   MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQVVSIYRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K      S    Q  L S   + +     + Y +SP+ Y+S  R+SL++++     
Sbjct: 61  EALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQTFASTPGN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +  TV+ +A ++  + + ++  VQ +R D+DK+I  E++NL R L++    N+A++  
Sbjct: 121 TTIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETANNAVRQA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  DA   LD RD +L+++SE++GIST+ R NND V+YTS GT LFET+PR++ F   
Sbjct: 181 TAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSGGTVLFETLPREVTFAPK 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++Y  T   N IFIDGV +++  G+    +GK+  LLQ+RD + P FQ+QLDEMAR L+ 
Sbjct: 241 SAYDATVTGNGIFIDGVPLAAGSGADTSAQGKLAGLLQLRDDIAPTFQSQLDEMARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F E                      +             ++    +  +          
Sbjct: 301 LFKE---------GGLPGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKANPFLLRDGGFN 351

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + N    AGY  L++ +  + + +  FD   G++   +++E+A +SIGW E+ RS + 
Sbjct: 352 GVVSNPDGNAGYTVLLDGFVTAMDGDMAFDGATGLDATSSIMEFAASSIGWFEQIRSGAS 411

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +     E+  +  GV++ EELS L+ +EQSY  S KLI   D M+ +LLE V
Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471

Query: 480 K 480
           +
Sbjct: 472 R 472


>gi|150395504|ref|YP_001325971.1| flagellar hook-associated protein FlgK [Sinorhizobium medicae
           WSM419]
 gi|150027019|gb|ABR59136.1| flagellar hook-associated protein FlgK [Sinorhizobium medicae
           WSM419]
          Length = 472

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 247/481 (51%), Gaps = 10/481 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    AQ+  +  +QQ A++ +NI N+ N +Y RR  M   +P    +V+      
Sbjct: 1   MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQIVSIYRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K      S    Q  L S   + +     + Y ++P+ Y+S  R+SL++++     
Sbjct: 61  EALLKQNLISISQSSAQSSLLSGLEIMKSALGGNDYESAPSTYLSAFRNSLQTFASTPGN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +  TV+ +A ++  + + ++  VQ +R D DK+I  +++NL R L++    N+A++  
Sbjct: 121 ATIAATVVSDASDLANSISRTSAAVQDLRLDTDKKIAEDVANLNRLLAQFETANNAVRQA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  DA   LD RD +L+++SE++GIST+ R NND V+YT+ GT LFET+PR++ F   
Sbjct: 181 TAAGTDATAALDDRDRILKQVSELVGISTVTRANNDTVIYTAGGTVLFETLPREVTFAPK 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++Y  T   N IFIDGV +++  G     +GK+  LLQ+RD + P FQ QLDEMAR L+ 
Sbjct: 241 SAYDATVTGNGIFIDGVPLAAGNGADTNAQGKLAGLLQLRDDIAPTFQTQLDEMARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F E                     ++             ++    +  +          
Sbjct: 301 LFQE---------GGLPGLFTWSGGNVPAAGAVEAGIAAYLSVNPAAKSNPFLLRDGGFN 351

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + N  N AG+ DL++ +  + + +  FD  AG++   +++E+A +S+GW E+ RS + 
Sbjct: 352 GIVSNPGNNAGFTDLLDSFVAAMDGDMAFDSAAGLDGTSSIMEFAASSVGWFEQIRSGAS 411

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +     E+  +  GV++ EELS L+ +EQSY  S KLI   D M+ +LLE V
Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471

Query: 480 K 480
           +
Sbjct: 472 R 472


>gi|15964433|ref|NP_384786.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti
           1021]
 gi|307311575|ref|ZP_07591216.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti
           BL225C]
 gi|15073610|emb|CAC45252.1| Putative flagellar hook-associated protein [Sinorhizobium meliloti
           1021]
 gi|306899592|gb|EFN30221.1| flagellar hook-associated protein FlgK [Sinorhizobium meliloti
           BL225C]
          Length = 472

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 246/481 (51%), Gaps = 10/481 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    AQ+  +  +QQ A++ +NI N+ N +Y RR  M   +P    +V+      
Sbjct: 1   MSLSSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSRRMAMLGTTPGGAQIVSIYRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K      S    Q  L S   + +     + Y +SP+ Y+S  R+SL++++     
Sbjct: 61  EALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQTFASTPGN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +  TV+ +A ++  + + ++  VQ +R D+DK+I  E++NL R L++    N+A+K  
Sbjct: 121 ATIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETANNAVKQA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  DA   LD RD +L+++SE++GIST+ R NND V+YTS GT LFET+PR++ F   
Sbjct: 181 TAAGTDATAALDDRDKILKQVSELVGISTVTRANNDTVIYTSGGTVLFETLPREVTFAPK 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++Y  T   N IFIDGV +++  G+    +GK+  LLQ+RD + P FQ+QLDEMAR L+ 
Sbjct: 241 SAYDATVTGNGIFIDGVPLAAGSGADTSAQGKLAGLLQLRDDIAPTFQSQLDEMARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F E                      +             ++    +  +          
Sbjct: 301 LFKE---------GGLPGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKANPFLLRDGGFN 351

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + N    AGY  L++ +  + + +  FD   G++   +++E+A +SIGW E+ RS + 
Sbjct: 352 GVVSNPDGNAGYTVLLDGFVTAMDGDMAFDGATGLDATSSIMEFAASSIGWFEQIRSGAS 411

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +     E+  +  GV++ EELS L+ +EQSY  S KLI   D M+ +LLE V
Sbjct: 412 TADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLEAV 471

Query: 480 K 480
           +
Sbjct: 472 R 472


>gi|163744345|ref|ZP_02151705.1| Flagellar hook-associated protein [Oceanibulbus indolifex HEL-45]
 gi|161381163|gb|EDQ05572.1| Flagellar hook-associated protein [Oceanibulbus indolifex HEL-45]
          Length = 468

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 179/480 (37%), Gaps = 13/480 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+ + FN A++  +    + + +  NI NA  + Y RR+ +       V +     +  
Sbjct: 1   MSISSAFNIARSGLSTTEGRASLVAGNIANAQTEGYARREAVQVTGNNTVDL-RVARQVD 59

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                +    S+ +G   +         +   +     SP   +++ +  L+  + N S+
Sbjct: 60  ERLAGMTRGASAQLGAASVTGEVLGSYLLTLGEPGDEVSPAARLAEFQAGLDLLANNPSD 119

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                 ++  +E +V + N +A  ++  R  A       +S +   L+++  +N+ ++  
Sbjct: 120 PAAQNDLLSRSETLVNSVNQAAVALEASRVQAGDSFVQSVSEVNEALADIAELNERLRLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                     +D+ +  L  +   +   +   ++  + ++T+ GT L             
Sbjct: 180 GGDGTGKAGLMDEMNRRLDALGSQMDFQSRWESDGSLTLHTTGGTELVHGDKAVRLTANR 239

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T+ + +  I         +       G++  L  +  + +P  + QLDE AR L+ S
Sbjct: 240 ETGTLMAGNIDITPGRATARGS-----DSGRLAGLSGLIANDLPQMKLQLDEFARGLVQS 294

Query: 301 FSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           F   D         +             + L   +S    V+P        LRD      
Sbjct: 295 FEAADASVGAGQPGLFTDAGGAFDATALDGLAGRLSINNSVHPDKGGALWRLRD------ 348

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                ++   G    +N + D       FD   G++T   L ++  + +      R  + 
Sbjct: 349 GAGATIQGEPGDTTQLNAFVDVLETGITFDAATGLSTTARLGDFGADMVSQQNVLRVGAD 408

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                ++V      ++ S+  GVN+  EL  L+++EQ+Y  + +++     ML TLL  V
Sbjct: 409 AQAETARVRLVTFEDNRSSIEGVNIDTELQKLLEIEQAYGANAQVLSSLTDMLDTLLASV 468


>gi|126730122|ref|ZP_01745934.1| flagellar hook-associated protein K [Sagittula stellata E-37]
 gi|126709502|gb|EBA08556.1| flagellar hook-associated protein K [Sagittula stellata E-37]
          Length = 482

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 178/489 (36%), Gaps = 18/489 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----ENVTVVTQR 56
           MSL    N A +     ++  + I  NI NA N+ Y RR              V V    
Sbjct: 1   MSLTGALNAAVSGLKANTRAASLISTNISNATNEAYGRRTLELNALGSGTRGGVLVAGVV 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            +   +      A  S +     + +F    E +  +   + S T  I+   ++L S S 
Sbjct: 61  RQYDPVLMADRMASDSQLAGGNDMYAFAKRMETLVGESGTSGSLTSRITAFENALLSASS 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +     + V   A ++    N  + EVQ  R  AD  I  ++S L   +S L  +ND 
Sbjct: 121 NPASAQRLELVAVTATDLTNAVNDLSNEVQLARQTADTTIAKQVSTLNAAVSRLAAINDI 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           ++   AS  +    LD+R  LL +IS I+ +  + R+   + ++T  G  L +    +I 
Sbjct: 181 VRSAEASGTETASILDERQALLNEISGIVPLRVVERDRGQIAIFTRRGGVLLDGKAYEIG 240

Query: 237 FEKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           F    +   ++       + + ++G  ++S+       G + A  ++RD      Q +LD
Sbjct: 241 FSTTGTIDASTTLGSGGLSGLTLNGAPINSSFNGMFAGGSLAAQFELRDVTAVGRQAELD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI--SETICVNPQYRSNPS 349
            +AR LI       P        PG F  +GI                  +         
Sbjct: 301 GIARDLIERLGPGGPDTTLGATDPGFFTDNGIAFTAANETGIAGRISLNALLAPAGGGTW 360

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +RD                G   LI    D+   + +    +  +   T ++       
Sbjct: 361 RIRD------GIGAAAPGEVGDAALIQDIADALGASNVPGSASLPSIARTFIDQVSQFSS 414

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +   R  S +           + E    T GV+  +EL  L++VEQ Y  + K+I   D
Sbjct: 415 SVAGERVRSENAFTFLSAQNRALREMEL-TKGVDTDQELQKLMQVEQYYTANAKVISTVD 473

Query: 470 KMLQTLLEG 478
            + + LL  
Sbjct: 474 DLFERLLSI 482


>gi|296102902|ref|YP_003613048.1| flagellar hook-associated protein FlgK [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057361|gb|ADF62099.1| flagellar hook-associated protein FlgK [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 545

 Score =  194 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/546 (13%), Positives = 168/546 (30%), Gaps = 72/546 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A     ++  NI + +   Y R+ T+   S             V V
Sbjct: 1   MSSLINSAMSGLSAAQAALNTVSNNISSYNVAGYTRQTTVLGASNSTLTGGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + + +D    NS +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTTRYQQMSKIDDVLSD--STNSLSTTLQDFFKSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    +TV+  A+ +V  F T+ + ++   +  +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKTNDQYLRDQDSQVNTAIASSVEQINNYAKQIAN 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     V   +G +L + 
Sbjct: 179 LNDQISRLTGVGAGSSPNDLLDQRDQLVSELNQIVGVEVAVQDGGTYNVSFGNGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +     +           V  G +  L   R   +   +N L
Sbjct: 239 SKANQLAAVKSSADPTRTTIAYSDEVSGNVEIPEKMVTTGSLGGLFTFRSEDLDKARNNL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------- 342
           +++A     + +++     ++    G  + D          +                  
Sbjct: 299 NQLALAFADAMNKQHEAGFDANGDAGGKLFDFGSPAVVTNSRNTGTAAMTATVADSTKVQ 358

Query: 343 ------QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD------- 389
                 Q+      +      S     +      +  L  +   S N    F        
Sbjct: 359 ATDYKLQFNGTDWTITRSDKTSFTMAPDASGNLSFDGLSVNVTGSANAKDSFIVKPVSDV 418

Query: 390 -------------------------------------PVAGINTNVTLLEYARNSIGWLE 412
                                                    +  N T  +   + +  + 
Sbjct: 419 IVNMELKFKDESKLAMASASNGGESDNRNGQKLLDLQNSKVVGGNKTFNDAYASLVSTVG 478

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + +           V   +++   +  GVNL EE   L + +Q Y  + +++     + 
Sbjct: 479 SSTAALKTSSETKANVATQLTKQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTASTLF 538

Query: 473 QTLLEG 478
             ++  
Sbjct: 539 DAIINI 544


>gi|225849064|ref|YP_002729228.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644050|gb|ACN99100.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 483

 Score =  194 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/491 (16%), Positives = 176/491 (35%), Gaps = 23/491 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MSLL + + A        +   S  +NI NA  + Y R   +    P   V +       
Sbjct: 1   MSLLGILSTAGQSLLTFQRGINSTNKNISNATTEGYNREVPVFQDFPRSGVFMNKIIRVF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                      +  +          +  E M  +D   +  +  ++   +S+        
Sbjct: 61  DRSLFNRSIELNQQLNSDNSFSEILSNIETMF-NDTLGSGFSSDLNNFFNSINDMLIKPD 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +       + NA+ +V    +    +   + D   ++  ++  + +   +L  +N  IK 
Sbjct: 120 DIAARSQFLANAQTLVGKIRSINDSLDNQKQDITLKVRDQVKQINQITDQLAKLNQTIKT 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD-INFE 238
           KT      +++L++RD L++++S++I    +   +N + V+T+ G  L   +    ++FE
Sbjct: 180 KTLDIEANNEYLNERDRLIKQLSDLIDTKVVFNEDNTVNVFTAKGYGLVVGIQSTPLSFE 239

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +     + N +      +++   +    G +K +  I D       N+L++   V  
Sbjct: 240 TDTNGNPVVKWNGV----ADITTEIQNGQLGGNLKGIKSINDQ-----LNKLNDFTTVFA 290

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNK----LCQGISETICVNPQYRSNPSFLRDG 354
             F++        +    L          +         ++ T         N ++L   
Sbjct: 291 TVFNKVHKKGYGLDGSTNLDFFTIDPSKSSTKIDASNIYLNITDPKKVALAQNSTYLNSD 350

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYC------DSFNKNFIFDPVAGINTNVTLLEYARN-S 407
            +  K  L    N+       +          +   +           + T  E+     
Sbjct: 351 NTNGKDLLGLKNNIRVLYTNPSQPVLTPAEEAALQSSLNDSTNYTYIKDHTFAEFYNTKL 410

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    S        ++ +++ I+E   N  GVN+ EEL  L K+++SY  S ++I  
Sbjct: 411 VADISSTSSYIKQQQQNNKYLYDAITEKMKNIAGVNMDEELINLSKLQRSYQASARIITV 470

Query: 468 TDKMLQTLLEG 478
           TD+++QT+L  
Sbjct: 471 TDELMQTILNL 481


>gi|170744544|ref|YP_001773199.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46]
 gi|168198818|gb|ACA20765.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46]
          Length = 483

 Score =  194 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/484 (25%), Positives = 209/484 (43%), Gaps = 6/484 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L      A++    +S Q A   RN+  A +  Y R+          VT V+    + 
Sbjct: 1   MGLSLALATARSSLLASSTQIAVSSRNVAGASSAGYSRKIATLVPGTGGVT-VSITRASD 59

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 + + +S +   + L       +    D     S    +S L  +L+S +    +
Sbjct: 60  AALYARMISATSDLAGSQQLLRGLQSLQQTVGDPQSTTSAAARLSALAAALQSAANRPDD 119

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +  +D A ++  + N +A  V + +ADAD  +   ++ +   LS+  + N A+   
Sbjct: 120 ATLARAALDKARDLAASLNQAAGAVARTQADADAAMGESVTRISDLLSQFDLANKAVMRG 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA   D  D LD RD ++ K+SE +G++ + R   D+ +YT  G  L++ +PR ++F   
Sbjct: 180 TALGADVTDALDSRDQIIAKLSEELGVTVVPREGGDVALYTDSGVPLYDRIPRKVSFAAT 239

Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y   +  N + IDGV V+  N    +  G +  L Q+RD   P +  QLDE+A  LI 
Sbjct: 240 PTYQSGTTGNAVIIDGVAVTGPNSPMPLRSGTLAGLSQLRDVAAPAYAAQLDEIASALIA 299

Query: 300 SFSEKDPIAG-NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
           +F E     G +   +        +      L   I+    V+PQ   +P+ LRDGG   
Sbjct: 300 TFRETSSSGGADLAGLFRNGSTSALPSSKAGLAAAITLNAAVDPQRGGDPALLRDGGMNG 359

Query: 359 KKFLWNVKNLA---GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +  N         Y   +     + +         G   ++ L EYA  S GWLE  R
Sbjct: 360 AAYRSNPAAAGSGTAYAGRLTALVAALSAKQSLGSAPGPTGSMALAEYAGASAGWLESQR 419

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +     +   +    S++ SN  GVN  +E +  +++E+SY  S KL+   D++ +TL
Sbjct: 420 KVASSTVDQQTTLLGRASDALSNVTGVNTDDETALTLQLERSYQASAKLVTLIDELFKTL 479

Query: 476 LEGV 479
           +  V
Sbjct: 480 MNAV 483


>gi|328470107|gb|EGF41018.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           10329]
          Length = 457

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 67/481 (13%), Positives = 154/481 (32%), Gaps = 39/481 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57
           N A +  N          +N+ + +   Y R+  +             S   V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVASVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVTSIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  K   + +S         S  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLVKQTWSTNSLAAYAAGYTSSMSQLENTLG--ADGFSISAGLDSLNAALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ +E + + FNT  + +     D + +    +++    +S +  VN  I
Sbjct: 123 PESMPYRQQIINESEALARRFNTLTQSLHNQHKDMNDQRSAALTHANSLMSNIAHVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+R+ L+ ++S++I + T  + +  M V    G  L          
Sbjct: 183 VEMQGTGGNPAQLMDKRENLIGELSQVIEVKTTDQPDGSMQVTLVSGQPLVMGSDFGQLS 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +         GK+ A+   +  V+   Q  LD+MA+ L
Sbjct: 243 AIPDPSDPYLADLHVNFANQSFAIGDS---VGGKLGAINDYQTDVLKPNQVALDDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++       + +   G  + +   D                         L      
Sbjct: 300 ADEYNAVLATGKDLKGNAGKPLFNYDPDNPAAS--------------------LTITDLS 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +++  ++     G  +++    D  NK            +V+L +   + +G        
Sbjct: 340 AEELAFSSDGTPGNANVLKSLIDLSNKPV----AVTGYGSVSLNDAFTSMVGQTAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L+
Sbjct: 396 ADADYQAKLAMSKQAHTARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVLQ 455

Query: 478 G 478
            
Sbjct: 456 L 456


>gi|323492332|ref|ZP_08097485.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG
           20546]
 gi|323313379|gb|EGA66490.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG
           20546]
          Length = 457

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 148/479 (30%), Gaps = 39/479 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
           N A +  N          +N+ N +   Y R+  M T               V V + R 
Sbjct: 5   NIALSGLNANRVALDVTAQNVSNINTPGYSRQQAMMTSVGAGKYDKLSAGMGVEVASIRR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  +   + +S         +  +  E          S +  +  L  +L   +  
Sbjct: 65  VTDQFLIQQTWSTNSLSAYATRYTTNMSQLENTLG--ADGFSLSAGLDTLFSALNDATVK 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  + +I+ AE + + FNT    +     D   +    +S+    ++ +  VN  I
Sbjct: 123 PESIPYRQQIINEAEALSRRFNTLTESLHNQHKDMSDQRSAAVSHANSLMTNIADVNKQI 182

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +    +D+RD L+ ++S+++ + T  + +  + V  + G  L          
Sbjct: 183 VEMQGTGGNPAQLMDERDALIGELSKVVEVKTTAQADGSLQVTLASGQPLVMGSDAGQLK 242

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +          +       +    +    G+I A+   +  V+  +Q  +++MA+ L
Sbjct: 243 AVPDPSDAYLADMQVEFGNQSFAI---TGSTGGQIGAINDFQTEVLKPYQVAINDMAKAL 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              F+       +     G  +                             S L   G  
Sbjct: 300 ADEFNNVLATGTDLNGNAGSALFSYDPANPA--------------------SSLTVTGID 339

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   +     G  D ++      NK            +++L +     +G        
Sbjct: 340 PDELALSGDGNPGNADTLDALIAISNKAVTV----TGFGSLSLNDAFTAMVGETAIKARQ 395

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +   +     +      +  N   VN  EE + L+    ++N + K+I   +++  ++L
Sbjct: 396 ADADYQAKLAINQQAIAARDNVSAVNSDEEAANLMTFANAHNANMKVISTANQLFDSVL 454


>gi|308071106|ref|YP_003872711.1| flagellar hook-associated protein [Paenibacillus polymyxa E681]
 gi|305860385|gb|ADM72173.1| Flagellar hook-associated protein [Paenibacillus polymyxa E681]
          Length = 526

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/523 (13%), Positives = 163/523 (31%), Gaps = 51/523 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S       A+   N  +    +   NI NA+   Y R+                      
Sbjct: 3   STFHGIETAKRSLNTQTAALNTTGHNISNANTAGYSRQVVSMKASDSMEAYGLNRSVVRG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V         +   D      SS+ G   +        E +  ++  +      +
Sbjct: 63  QMGTGVEFTAIERVRQTFLDDQYRNESSSQGGWDIRYDTLNKLETIM-NEPSDTGIRKVM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               D+    S++  +    K V +    +    N +++++  + +D    + L+ S + 
Sbjct: 122 DNFWDAWSDLSQDPQDVTNRKIVKETTLALTDAMNQTSKQLDALSSDLTTNVTLKTSEMN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY---- 220
             L  +  +N  I        + +D  DQRD  + K+S++  +     +N   V      
Sbjct: 182 SLLQSVADLNSNIYKLEQLGDNPNDLRDQRDYAVDKLSKLANVQVTQLDNGYQVTVAGQI 241

Query: 221 ----------------------TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
                                 T  G  ++  +     +       +   +N +    + 
Sbjct: 242 AVAGTEVTAITAAGLEAAYQGGTLTGGEVYGMILSRDKYVADYKTQMDQLANTLANGNIE 301

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL---IGSFSEKDPIAGNSENVP 315
           ++   G+ +P+G +        +V     N    +   L   +   +    +        
Sbjct: 302 ITLPAGTVLPEGTVLNSGVNNAAVTYSNANNNRTLTADLKVTVQGINGLHQLGYTLSGTT 361

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                      D       +  I +N   + +P+ +     V      N K   G   L 
Sbjct: 362 PQKGGAFFTSKDGAA--ITAGNITLNKDIQDDPNKIASSLRVDGTGTANEKVTVGNNALA 419

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                  N  F F+         T+ ++    +G L     ++      +Q++   +  +
Sbjct: 420 LSMASLKNVKFGFN--TTQAQTTTVDDFFSAIVGQLGVQTQEAERQSQNAQLLTEQVDLN 477

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  GV+L EE+S +IK + +Y+ +++ +   D++L  L+ G
Sbjct: 478 RQSVSGVSLDEEMSNMIKFQHAYSAASRFMTTFDQLLDKLING 520


>gi|291326355|ref|ZP_06124197.2| flagellar hook-associated protein FlgK [Providencia rettgeri DSM
           1131]
 gi|291314693|gb|EFE55146.1| flagellar hook-associated protein FlgK [Providencia rettgeri DSM
           1131]
          Length = 562

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/548 (13%), Positives = 167/548 (30%), Gaps = 75/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           L  V N A +  N A    + I  N+ NA    Y R+  +   +                
Sbjct: 17  LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 76

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R E     +       +  G            + +  +D  +   +  I     +L+
Sbjct: 77  SHVRREFDEFINAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIED--ISSNIGSFFTALD 134

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S + S+  L    + N+  ++  F  + R +Q++  D + +IE ++ ++  +  ++  
Sbjct: 135 AASSDASDKTLIDVFLGNSNALLGQFKEADRRLQEMERDINHQIENKVKDINIYAEKIAG 194

Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    + S  + +D LD RD L+ +++ ++G+  I + N +  V  ++G  L    
Sbjct: 195 LNQQISRIRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQ-NGNYNVTFANGLPLVTGE 253

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +      +S   +  S                +   G++  +L+ R  V+     +L+
Sbjct: 254 KANRLEAVPSSKDDSRFSIGFVGANGQAREIPDESFRGGELSGILRSRQEVMDPAYQKLN 313

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG---------------ISE 336
           ++A V    F+E      ++    G    +  K                        ++ 
Sbjct: 314 KLALVFATKFNEVHSKGYDANGNTGKDFFEIGKGSVVSNTHNSGKADFDLSYSDVSKVTG 373

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL---------------------------- 368
                    +  +  R    ++     N                                
Sbjct: 374 NNYELRFDGNEWNVTRLPEGINVPVDSNTAGTLKFDGLEIKISNSTGMSKGDSFLVKPVS 433

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTN------------------VTLLEYARNSIGW 410
                +     ++ +        +G   N                   T  ++    +  
Sbjct: 434 GVINGMQTLVSNASDFAAAGSKDSGPGDNENIKQLVKLQDEKLIDGSSTFSDFYATLVND 493

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +      +         +     E      GVN+ EE   + K++Q +N + +++   D 
Sbjct: 494 VGSKTKQAQIDSETQNKMTESFYEQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDD 553

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 554 LFNALMRA 561


>gi|257871323|ref|ZP_05650976.1| flagellar hook-associated protein FlgK [Enterococcus gallinarum
           EG2]
 gi|257805487|gb|EEV34309.1| flagellar hook-associated protein FlgK [Enterococcus gallinarum
           EG2]
          Length = 507

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/502 (15%), Positives = 154/502 (30%), Gaps = 27/502 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
            L      A            +   NI N +   Y R+                     V
Sbjct: 3   GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +      +     +   +S               E +  ++  +N  +  ++ + DS
Sbjct: 63  KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
             + + N   D     V++N+       N   +++ ++++D    IE    +    + +L
Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   T S    +D LD+RD LL+ +S + GI T         V  S  T L   
Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI----- 285
               ++     S T    S          +           +       D+         
Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTILLTKTTDNGDTAYTELPIKE 301

Query: 286 -FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                L   +  +    +E +           +    G          G  +T       
Sbjct: 302 GAIGGLQASSGEIGSRLTELNNFTTTIAQAMNMVFTSGASRTSGLFEIGQDDTGTATTIR 361

Query: 345 RS-----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395
            S     NPS +  G S +         +A        +  S      FDP     A   
Sbjct: 362 VSQALLDNPSLVAGGTSNTAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDPETLTFANAA 421

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           + +++  Y  + +     ++  + +       + N +     +  GV+L EE+S +I+ +
Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           Q +  + +++    +ML TL+ 
Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503


>gi|302874576|ref|YP_003843209.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans
           743B]
 gi|307690813|ref|ZP_07633259.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans
           743B]
 gi|302577433|gb|ADL51445.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans
           743B]
          Length = 579

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 80/577 (13%), Positives = 172/577 (29%), Gaps = 101/577 (17%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S+L+  N A    N      ++   NI NA+ + Y R+      S               
Sbjct: 3   SILSTLNTANKGINAQQTAISTTSHNIANANTEGYSRQRVNLVTSRPFSSPSFNSAAGPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V +         D  +    S +G Q     + +  E +  ++  + + ++ +
Sbjct: 63  QIGTGVDVASIERIRNTFLDYQVRQEKSNLGNQTTRNQYLSNIESIM-NEPTDTALSNAM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   + + ++    +      V  NA  V    N +   ++K++ D    I   + ++ 
Sbjct: 122 DRFYSAWQEFANKPEDSNSRTVVAQNALSVSDMLNQTYFSLEKMQNDIHDNIRQNVLDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI----------------------- 201
             L+ L  +N  I   + S    +D +D RD+LL ++                       
Sbjct: 182 NLLNSLDSINQQIIQVSVSGQSPNDLMDTRDLLLDQLSENMGITVDRTPDFNGNNILPTE 241

Query: 202 ---------------------SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                                S +  I  +  +N  +  Y     T        +     
Sbjct: 242 TNGIGDATLVKSVFNDQVKRYSYVSNIEDLGGSNYKITYYKYGDMTSNANADSFVVKMND 301

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSA-----------------VPKGKIKALLQIRDSVV 283
             Y    +S  I+ +    +    +                     G +  L  I+  V 
Sbjct: 302 AEYKKLDQSRVIWANAQGAAIKNSTDTIKSTDVLNFSELRIFEPSSGDLAGLRTIQADV- 360

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG-----LFIADGIKDLDNKLCQGISETI 338
             ++++L+  A+ L  S +     + +            F  +      +      +  I
Sbjct: 361 DQYKDKLNRFAKALAFSVNAVHTQSVDGTPSTNVENSIDFFVNNEDTSIDWEKNITAGNI 420

Query: 339 CVNPQYRSNPSFLRDGGSVSKK----------------FLWNVKNLAGYPDLINHYCDSF 382
            VN    S+   +  G                                          S 
Sbjct: 421 TVNKDIISDVMKINSGLKDGGNKDNRIALAIAMLKDVTIKAQDVTSTTDRVDFTSTMASL 480

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                      ++  +TL  Y ++ +  L      + D       + N +  +  +  GV
Sbjct: 481 TNENSTITFKNVDGGMTLKSYHKDLVAKLGVQNKQAVDDVSTRTSLLNQLQSARDSVSGV 540

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++ EE++ LI+ + +Y  + K+I   D++L  L+ G+
Sbjct: 541 SIDEEMTNLIQFQHAYVANAKVISTVDQLLDVLVNGL 577


>gi|183598623|ref|ZP_02960116.1| hypothetical protein PROSTU_02024 [Providencia stuartii ATCC 25827]
 gi|188020803|gb|EDU58843.1| hypothetical protein PROSTU_02024 [Providencia stuartii ATCC 25827]
          Length = 559

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 78/547 (14%), Positives = 171/547 (31%), Gaps = 74/547 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           L  V N A +  N A    + I  N+ NA    Y R+  +   +                
Sbjct: 15  LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 74

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R E     ++      +  G+        +  + +  +D  +   +  I     +L+
Sbjct: 75  SHVRREFDEFINQQYGQSRARSGEYEAYAKNSSQVDDLLTNDIED--ISSNIGSFFTALD 132

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S + S+  L    +  +  +V  F  + R +Q++  D +++IE ++ ++  +  ++  
Sbjct: 133 AASSDASDKTLIDVFLGKSNALVGQFKEADRRLQEMERDVNRQIETKVKDINTYAEKIAG 192

Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    + S  + +D LD RD L+ +I+ +IG+  I + N +  V  ++G  L    
Sbjct: 193 LNQQIARVRSVSGSEPNDLLDVRDRLVSEINSLIGVKVIEQ-NGNYNVTFANGLPLVTGE 251

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +      +S   +  S         V      A   G++  +L+ R  V+     +L+
Sbjct: 252 NANRLEAVPSSQDDSRFSIGFVGANGQVREIADDAFRGGELSGVLRSRKEVIDPAYQKLN 311

Query: 292 EMARVLIG--------------------------------------SFSEKDPIAGNSEN 313
           ++A V                                          F            
Sbjct: 312 KLALVFASKFNEVHKKGFDANGNPGKDFFEIGKGNVVSNTFNRGKAEFDFNYSDVSQVTG 371

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                  DG +    +L +G + T+  +         +    + +     +   +     
Sbjct: 372 NNYEMRFDGKEWNVTRLPEGFAVTVDRSTPDTLKFDGIELKITQNNVQSGDSFLVKPVNG 431

Query: 374 LINHYCDSFNKNFIFDPVA----------------------GINTNVTLLEYARNSIGWL 411
           +IN      +    F                           I    T  +Y    +  +
Sbjct: 432 VINGMQSLISDAANFAAAGEKGSGPGDNDNLKELVKLQDQKLIGGTSTFSDYYATIVNDV 491

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +         +     +      GVN+ EE   + K++Q +N + +++   D +
Sbjct: 492 GNQTKQAQIDSETQNKMTESFYQQEQAVSGVNMNEESIQMQKIQQFFNANAQVLKTVDDL 551

Query: 472 LQTLLEG 478
              L+  
Sbjct: 552 FNALMRA 558


>gi|119385424|ref|YP_916480.1| flagellar hook-associated protein FlgK [Paracoccus denitrificans
           PD1222]
 gi|119375191|gb|ABL70784.1| flagellar hook-associated protein FlgK [Paracoccus denitrificans
           PD1222]
          Length = 486

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 179/489 (36%), Gaps = 15/489 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----PENVTVVTQR 56
           MS+ +  + A +    AS+    +  NI NA    + RR+   +         V +    
Sbjct: 1   MSISSAISNAVSGLTAASRGIEIVSSNIANALTPGHARRELDLSSRPSEHGGGVNIDGVS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                          + +G  R + +F A  E         +S    ++    +L S + 
Sbjct: 61  RIFTAGLIADNRLAEAGVGSSRTVAAFHAAMEKAFGTGTGISSLGQSLTDFESALTSAAS 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
               D+    V+D A  + +  N  +  +Q  R+ A++ IE ++S L   L ++  +N  
Sbjct: 121 RPDSDMRLSNVLDTATALAKKINDISTTIQAERSKAEQAIESDVSRLNAALQQVAKLNAQ 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV-PRDI 235
           I   TA   DA   +D R   +  IS+I+ I  + R N  + ++T DG  L +   P  I
Sbjct: 181 IVTITAQSKDASSLVDARQAAIDGISDILPIKEVPRENGRIALFTPDGAILLDGTEPARI 240

Query: 236 NFEKMNSYTV-----TSESNPIFIDGVVVSSNQGSAV-PKGKIKALLQIRDSVVPIFQNQ 289
            F  +   T      +S  + + ++G  ++  Q   +   G + A   IRD + P +Q Q
Sbjct: 241 EFSAVPGITAEMSIGSSALSALTLNGKPLTGPQQQTMLSGGSLGANFAIRDQIAPAYQQQ 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +D  AR L    S+    +  +   PGLF                         +  +P 
Sbjct: 301 IDAFARDLYDRLSDPMIDSSLNTGGPGLFTDAQGAFDPANESGFAGRIA---VTFLVSPE 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                  +           +G   L++    + + +         N   +L   +     
Sbjct: 358 TGGQLWRIRAGINAPDPGNSGESALLDRLSSAISASRFPASAHLSNAPRSLQTLSAELSS 417

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
               NR  S    ++S    + +  +     GV+  +E+  L+ +E++Y  + K+    +
Sbjct: 418 GAATNRIRSEASALQSSSHQSGLKAALLAE-GVDSDKEMESLLALERAYAANAKVFQTAN 476

Query: 470 KMLQTLLEG 478
            ML  +L  
Sbjct: 477 DMLDAILRL 485


>gi|257866412|ref|ZP_05646065.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus
           EC30]
 gi|257873072|ref|ZP_05652725.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus
           EC10]
 gi|257800370|gb|EEV29398.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus
           EC30]
 gi|257807236|gb|EEV36058.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus
           EC10]
          Length = 507

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 27/502 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
            L      A            +   NI N +   Y R+                     V
Sbjct: 3   GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +      +     +   +S               E +  ++  +N  +  ++ + DS
Sbjct: 63  KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
             + + N   D     V++N+       N   +++ ++++D    IE    +    + +L
Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   T S    +D LD+RD LL+ +S + GI T         V  S  T L   
Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241

Query: 231 VPRDINFEKMNSYTV----------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
               ++     S T                              +          L I++
Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTVLLTKTTDNGETAYTELPIKE 301

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-DNKLCQGISETIC 339
             +   Q    E+   L    +    IA     V     +         +   G + TI 
Sbjct: 302 GAIGGLQASSGEIGSRLTELNNFTTTIAQAMNMVFTGGASPTSGLFEIGQDDTGTATTIR 361

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395
           V+     NPS +  G S +         +A        +  S      FD      A   
Sbjct: 362 VSQALLDNPSLVTGGTSNAAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDSETLTFANAA 421

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           + +++  Y  + +     ++  + +       + N +     +  GV+L EE+S +I+ +
Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           Q +  + +++    +ML TL+ 
Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503


>gi|325567496|ref|ZP_08144163.1| hypothetical protein HMPREF9087_0452 [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158929|gb|EGC71075.1| hypothetical protein HMPREF9087_0452 [Enterococcus casseliflavus
           ATCC 12755]
          Length = 507

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 27/502 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
            L      A            +   NI N +   Y R+                     V
Sbjct: 3   GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +      +     +   +S               E +  ++  +N  +  ++ + DS
Sbjct: 63  KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
             + + N   D     V++N+       N   +++ ++++D    IE    +    + +L
Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   T S    +D LD+RD LL+ +S + GI T         V  S  T L   
Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241

Query: 231 VPRDINFEKMNSYTV----------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
               ++     S T                              +          L I++
Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTVLLTKTTDNGETAYTELPIKE 301

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-DNKLCQGISETIC 339
             +   Q    E+   L    +    IA     V     +         +   G + TI 
Sbjct: 302 GAIGGLQASSGEIGSRLTELNNFTSTIAQAMNMVFTGGASPTSGLFEIGQDDTGTATTIR 361

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395
           V+     NPS +  G S +         +A        +  S      FD      A   
Sbjct: 362 VSQALLDNPSLVTGGTSNAAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDSETLTFANAA 421

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           + +++  Y  + +     ++  + +       + N +     +  GV+L EE+S +I+ +
Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           Q +  + +++    +ML TL+ 
Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503


>gi|257876025|ref|ZP_05655678.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus
           EC20]
 gi|257810191|gb|EEV39011.1| flagellar hook-associated protein FlgK [Enterococcus casseliflavus
           EC20]
          Length = 507

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 153/502 (30%), Gaps = 27/502 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
            L      A            +   NI N +   Y R+                     V
Sbjct: 3   GLFGSLGTATRGMTANQAALQTSSHNIANTNTDGYSRQRVNLQAEASYHLAGVGSIGMGV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +      +     +   +S               E +  ++  +N  +  ++ + DS
Sbjct: 63  KVGSVERIVDDFVIGQVRNANSTYTYYEQKADILGQLESLM-NEPSDNGLSKQLATMFDS 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
             + + N   D     V++N+       N   +++ ++++D    IE    +    + +L
Sbjct: 122 WTALANNPELDTSKTLVLENSSTFADTINQMGKQMTQLQSDTLDTIEKSALDFNEKVKQL 181

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   T S    +D LD+RD LL+ +S + GI T         V  S  T L   
Sbjct: 182 QSLNEQIYGLTTSGETPNDLLDRRDSLLKDLSGLAGIETKTDQYGRGFVSMSGQTILSAE 241

Query: 231 VPRDINFEKMNSYT------VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
               ++     S T        +  NP         +                    +  
Sbjct: 242 ERNTLSVVVGQSDTGALVSKDGNALNPAETITGSYPAGTVLLTKTTDNGETAYTELPIKE 301

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                L   +  +    +E +           +    G          G  +T       
Sbjct: 302 GAIGGLQASSSEIGSRLTELNNFTTTIAQAMNMVFTGGASPTSGLFEIGQDDTGTATTIR 361

Query: 345 RS-----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV----AGIN 395
            S     NPS +  G S +         +A        +  S      FD      A   
Sbjct: 362 VSQALLDNPSLVTGGTSNAAGDGSRAAAMAKLSSAKLDFPLSEKTIASFDSETLTFANAA 421

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           + +++  Y  + +     ++  + +       + N +     +  GV+L EE+S +I+ +
Sbjct: 422 SGMSVSSYFNSIVTKNGISKQQADNTVSAQLSLLNQLEYKNQSVSGVSLNEEMSDVIRFQ 481

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           Q +  + +++    +ML TL+ 
Sbjct: 482 QGFQANARILSVVSEMLDTLIN 503


>gi|319409168|emb|CBI82812.1| Flagellar hook-associated protein FlgK [Bartonella schoenbuchensis
           R1]
          Length = 456

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/481 (24%), Positives = 224/481 (46%), Gaps = 26/481 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M   +  N A+N     + Q   + +N+  A + NYVRR +     P+    +  R +  
Sbjct: 1   MGFNSTINTARNSLKATTGQLGIVSQNVVGAQDPNYVRRTSYIESGPKGAVHLMVRRDGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS       + +       +   D ++ +P+  +S  + +L++Y+ +  +
Sbjct: 61  IHLLNNYLVKSSQAAVSGSVANGLNRLSNIYGVDEFSRAPSQLLSDFQKALQTYANDPQQ 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G   +D A ++V + N   RE++K+R DAD +I+  + ++   L +   ++  +  +
Sbjct: 121 RFAGDAAVDRARDLVYSLNEGNREIEKLRNDADSDIQDSVDHINDLLQQFHELDQYVVRE 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +  D   ++DQRD +L+ +S+ IGI+T+  ++  M +Y  DG+TL++  PR++ F+  
Sbjct: 181 RNAGRDDSIYMDQRDTVLKALSQEIGINTVYHSDGSMTIYGMDGSTLYDKTPREVTFQSS 240

Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            S         +F+DGV +   +       G +  LL+IRD + P +Q QLDEMA  L+ 
Sbjct: 241 GSLPAGVAGKQVFVDGVPLGHPSFVEPNGGGNLGGLLRIRDEIAPQYQKQLDEMANALLQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F             P LF+ D   D      +G+S  I +N  + SN            
Sbjct: 301 MF----------PGPPSLFLDDNQPDGVIGPIEGLSGRIRLNSVFDSNT----------- 339

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                      + + +    D+F++   F    G+    +++++++NSIGWLE  RSD+ 
Sbjct: 340 ----EGGGPEHFGEDLQSLVDAFDQKRTFGTDTGLFPEQSIMDFSKNSIGWLEGLRSDAD 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                   +F H SE+ SN  GVN  +E+  ++++EQ+Y  + ++I    KML  L+  +
Sbjct: 396 KDAKYHSTMFLHASEALSNGTGVNTDDEMVLMLQLEQTYAATTRIISTVGKMLDDLMIAI 455

Query: 480 K 480
           +
Sbjct: 456 R 456


>gi|146294544|ref|YP_001184968.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens
           CN-32]
 gi|145566234|gb|ABP77169.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens
           CN-32]
          Length = 457

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 160/485 (32%), Gaps = 36/485 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+    N  ++    +     +   N+ NA    Y R+  M +              V 
Sbjct: 1   MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +SA+G  ++  S+    E +       N+ +  + +L  +L S
Sbjct: 58  GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFG--ADGNNISKGLDQLFAALNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +     ++V++ A+ V Q  N     +   R   + ++   +  +   L+ +   
Sbjct: 116 SMEQPNLIAYRQSVLNEAKAVAQRVNAINDNIDSQRNQINGQLGTSVKEINAQLAIIANF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+  + +        D RD  +  ++ II I  +  +   + +  + G  L      
Sbjct: 176 NRDIQAASVTGTIPPALQDGRDAAIDDLAAIIDIRVVEDSQGMLNISLARGEPLLTGNTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +     +    I       + ++ +    G + ALL  RD+ +   Q  +DE+
Sbjct: 236 AKLTSAPDPANPKNNLVSIQFGASQFNVDETA---GGSLGALLNYRDTQLADSQAYIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A +L   F+       +             +  +      ++     +            
Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGQ------ 346

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    +       NK   F     + ++ +L E   + +G L  
Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSSTSLAESFSSKVGQLGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      S  +       +++T GVN  EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAISFAKTSVDLQKDAQVQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451

Query: 474 TLLEG 478
           T+L  
Sbjct: 452 TMLSS 456


>gi|89068727|ref|ZP_01156113.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
 gi|89045690|gb|EAR51752.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
          Length = 470

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/485 (17%), Positives = 185/485 (38%), Gaps = 21/485 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--SE 58
           MSL    +  ++     S+   +   N+ NA  + YVRRD   + +     V+      +
Sbjct: 1   MSLTNALSAGRSGLLAVSRWSETTAGNVANAKTQGYVRRDVGLSTNVVGGGVIVTGITRD 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +     ++   H +    Q  +                  + +  +  L+D+  + +   
Sbjct: 61  SDAALTRLHRDHLAEGATQSTISDRLQAYATALGQPGDPTTLSARLGGLQDAFVALASTP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                 ++V++ AE      N  +R++        ++I  ++  +   LSEL  +N  + 
Sbjct: 121 GSGPAQRSVLEAAEGAAAALNGLSRQLDSAVRGVGEQIAGQVERVEGLLSELAAMNARMA 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-LFETVPRDINF 237
                   + +  D+ D  L  ++  +      R +  + ++T DGT  L    P  + F
Sbjct: 181 GTEQGTAASAELRDRMDGRLDALATSLDFQVRERVDGGLDIFTPDGTVMLDGDDPAPLTF 240

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSN--QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +           + +  DGV ++     G  + +G +  L ++R  ++P F+ QLDE AR
Sbjct: 241 DPN---------SGLAFDGVDITPGKAVGRGITEGVLAGLTELRSEILPRFRMQLDETAR 291

Query: 296 VLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            L+ +F++ DP        +     A     L   L   I+      P+       +RD 
Sbjct: 292 ALVQTFADADPTVGAGGAGLFTDAGAGYDPALHEGLAGRITVNDAARPEAGGALWRVRD- 350

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                      +   G   +++   D   +  ++DP  G+     L E+A   +      
Sbjct: 351 -----GMGAVSEGPPGDATVVDGILDRLAQGQVYDPATGLQGGAPLGEFAAQLMADQHAV 405

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           R+ +             ++ES +   GV++  E+  L+++EQ+Y  ++K++    +M+  
Sbjct: 406 RARADTALEGLNTATAAVAESRAARQGVDIDAEMQRLLEIEQTYAANSKVLTTVVRMIDD 465

Query: 475 LLEGV 479
           LL  +
Sbjct: 466 LLAAI 470


>gi|191168469|ref|ZP_03030257.1| flagellar hook-associated protein FlgK [Escherichia coli B7A]
 gi|190901488|gb|EDV61249.1| flagellar hook-associated protein FlgK [Escherichia coli B7A]
          Length = 547

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLIARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------------------- 325
            ++A     +F+ +     ++    G       K                          
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASVVL 358

Query: 326 -----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  + + P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTATPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|238752861|ref|ZP_04614326.1| Flagellar hook-associated protein [Yersinia rohdei ATCC 43380]
 gi|238708900|gb|EEQ01153.1| Flagellar hook-associated protein [Yersinia rohdei ATCC 43380]
          Length = 452

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/479 (12%), Positives = 156/479 (32%), Gaps = 42/479 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSEN 59
            A +    A     +   N+ N     Y R+    +          +   V V   +  +
Sbjct: 6   TALSGTKAAQAHLDATAMNVANMKTPGYSRQRAEQSALGASGVGAYAGNGVNVDGIKRIS 65

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +   K     +S        Q +    E + + +  + S +  +++   +L+  +    
Sbjct: 66  DHYLVKQEWQANSQSAYFNGKQRYLDKLESVVSTE--STSLSKGLNEFYAALDGATLIPD 123

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                + +I+ A+ +    N +   + + +     +    I  +    S +   N  I  
Sbjct: 124 SLPQRQNIINRADALALRINNTNMTLSEQKQSIANQRASCIDQINVLTSAIADYNKKIVH 183

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             +   +++  +D RD  + ++S +I   +I   +  + +   +G  L       ++   
Sbjct: 184 LDSIGTNSNALIDNRDKKINELSTLIETRSIQAKDGSLSLSLKNGQPL-------VSGST 236

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S T       + ++ V   S    +   G++ +L      ++   Q  +  +A  L  
Sbjct: 237 AASITANVGRPGLNLNFVGTQSLIDMSC-GGQLGSLHDYETGILNSVQETIQNIANHLAT 295

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            F+ +  +  + E   G+ + D        + Q  + ++       S             
Sbjct: 296 EFNRQLLLGTDLEGNTGVELFDFQSTNPKGILQVNAISLKQLALAGS------------- 342

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  N  G    ++      +K   F+ +     N  L + A   +  +      + 
Sbjct: 343 ------GNGPGDNTNLHELIAIKDKPITFNGIQ----NTKLSDAAFGLLSDVGVASGRNK 392

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                ++ V N       +   V+  EE   L++ ++ Y  + K++   D++ + LL  
Sbjct: 393 TELTAARDVLNQAIRERDSVSSVDKDEEAINLMEYQRVYQSNIKVVSTGDQLFRDLLAL 451


>gi|94969957|ref|YP_592005.1| flagellar hook-associated protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552007|gb|ABF41931.1| Flagellar hook-associated protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 458

 Score =  191 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 169/487 (34%), Gaps = 45/487 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
           SL    + A            +   NI N +   Y R+  + +               V 
Sbjct: 3   SLSGTLSIATRAMLAEQGAMQATTNNIANVNTPGYSRQIPIFSAVDPVVSGSTTYGNGVE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +   +S    + +  L        Q  L     ++ ++  A    +      +S   +S+
Sbjct: 63  LRGYQSLRNRVLN--LRIAEEQQNQSALQSYVSSMDQVQVAFSDASGGIGGALSAFFNSI 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              S       L ++V+ +A  +V  F+T A  +  ++   D E++ +++ + R   ++ 
Sbjct: 121 SQLSTQPDSTTLRQSVLSSANTLVNAFHTDASSLSSMQQGLDLEVKDQVNEVNRLTVQIA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I        D     DQ D  + ++S ++ +S     +    + T++G  L    
Sbjct: 181 SLNGRISAMQKLHQDPGTLSDQLDQSVSELSNLLDVSVTQTEDGI-SLTTANGVALVVGD 239

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +  T  S      ID         + + KG +  +L++RD  VP  Q+QLD
Sbjct: 240 KSFGLTTAADPDTGLSRVQAGEID-------LTALLQKGSLGGVLRVRDEEVPSIQSQLD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A  L  + +       +    PG  +                         ++  + +
Sbjct: 293 KLAAGLSTAMNAVHQTGFDLNGNPGGLLFS-----------------APPSDGKNAAALI 335

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               S   +   +    AG   + N      N+  +         N T ++     +  +
Sbjct: 336 SLAISDPAQLAMSGNGAAGDNTVANELLQIKNQAVV--------GNATPIDAYSQIVFNV 387

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + SD+      S  +   + +      GV+L EE + L++ ++ +  +  L+   D+M
Sbjct: 388 GSDISDAQAGLDTSTSLLQQLQDQRGALSGVSLDEETANLLQFQRGFEAAAHLVSVVDEM 447

Query: 472 LQTLLEG 478
           +QT++  
Sbjct: 448 MQTVIAM 454


>gi|193064539|ref|ZP_03045619.1| flagellar hook-associated protein FlgK [Escherichia coli E22]
 gi|194428412|ref|ZP_03060952.1| flagellar hook-associated protein FlgK [Escherichia coli B171]
 gi|260843322|ref|YP_003221100.1| flagellar hook-filament junction protein FlgK [Escherichia coli
           O103:H2 str. 12009]
 gi|192927791|gb|EDV82405.1| flagellar hook-associated protein FlgK [Escherichia coli E22]
 gi|194413464|gb|EDX29746.1| flagellar hook-associated protein FlgK [Escherichia coli B171]
 gi|257758469|dbj|BAI29966.1| flagellar hook-filament junction protein FlgK [Escherichia coli
           O103:H2 str. 12009]
          Length = 547

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------------------- 325
            ++A     +F+ +     ++    G       K                          
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFTIGKPAVLQNTKNKGDVAIGATVTDASVVL 358

Query: 326 -----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  + + P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTATPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|120597311|ref|YP_961885.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1]
 gi|120557404|gb|ABM23331.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1]
          Length = 457

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 160/485 (32%), Gaps = 36/485 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+    N  ++    +     +   N+ NA    Y R+  M +              V 
Sbjct: 1   MSM---LNIGKSGLLASMAALNATSNNVANAMVAGYSRQQVMLSSVGGGAYGSGAGVFVD 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  +       L   +SA+G  ++  S+    E +       N+ +  + +L  +L S
Sbjct: 58  GVRRISDQYEVAQLWQTTSAVGFSKVQSSYLRQAEQVFG--ADGNNISKGLDQLFAALNS 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +  +     ++V++ A+ V Q  N     +   R   + ++   +  +   L+ +   
Sbjct: 116 SMEQPNLIAYRQSVLNEAKAVAQRVNAINDNIDSQRNQINGQLGTSVKEINSQLAIIANF 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+  + +        D RD  +  ++ II I  +  +   + +  + G  L      
Sbjct: 176 NRDIQAASVTGTIPPALQDGRDAAIDDLAAIIDIRVVEDSQGMLNISLARGEPLLTGNTA 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +     +    I       + +Q +    G + ALL  RD+ +   Q  +DE+
Sbjct: 236 AKLTSAPDPANPKNNLVSIQFGASQFNVDQTA---GGSLGALLNYRDTQLADSQAYIDEL 292

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A +L   F+       +             +  +      ++     +            
Sbjct: 293 AVMLATEFNSILASGTDLNGATPSQDLFTYQANNPGGSLSLTAGFTPDKLAFGQ------ 346

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                           G    +       NK   F     + ++ +L E   + +G L  
Sbjct: 347 ------------DGTQGDNTNLKALVQLANKELSF---TSLGSSTSLAESFSSKVGQLGS 391

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +      S  +       +++T GVN  EE   LI  +QSY  + K+I   D++ Q
Sbjct: 392 ASRQAISFAKTSVDLQKDAQVQWASTSGVNPDEEGINLIIYQQSYMANAKVISTADQLFQ 451

Query: 474 TLLEG 478
           T+L  
Sbjct: 452 TMLSS 456


>gi|293395589|ref|ZP_06639872.1| flagellar hook-associated protein FlgK [Serratia odorifera DSM
           4582]
 gi|291421908|gb|EFE95154.1| flagellar hook-associated protein FlgK [Serratia odorifera DSM
           4582]
          Length = 549

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 77/552 (13%), Positives = 177/552 (32%), Gaps = 78/552 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  N A    +++  NI N +   Y R+  +   +             V
Sbjct: 1   MS-NSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTAILAQNGGMGTMSGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV +   E        L    S  G       FE + ++ +      N+ +  +     +
Sbjct: 60  TVTSVNREYNQFITNQLRGAQSQAGAHD--AYFEKVSQIDNLLADKTNTLSSSMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D    TV+  A  +V  FN + + ++ + +  ++++      +  +  ++
Sbjct: 118 LQNLVSNAGDDASRNTVLGKANGLVNQFNNTDKYLRDMESGVNQQLSDSAVQINNYSQQI 177

Query: 171 TVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I     S   + +  LDQRD L+ ++++I+G+    ++ +   V  ++G TL +
Sbjct: 178 AKLNQDITRLRGSGGGEPNALLDQRDQLVSELNQIVGVQVTQQDGDAYSVSFANGLTLVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S   +      +  G   S      +  G +  +L+ R   +   +NQ
Sbjct: 238 GNNAYQVEAMPSSQDPSR-LTLGYNRGSGASEIPQGQIVSGSVSGVLKFRSEALDSARNQ 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-------------------------- 323
           L ++A  +  +F+++     +     G                                 
Sbjct: 297 LGQIALAMADNFNQQHRAGFDINGDAGGDFFSFSGGRVVENTRNVGDATLGVSYTDTGKV 356

Query: 324 --------KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                    D +N     +S+   +     ++ S          +   +          +
Sbjct: 357 QASDYRVEFDGNNWQVTRLSDNTPITASAGTDASGTPTLAFEGLQVSIDGNAQKNDSFTV 416

Query: 376 NHYCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARN 406
               D      +    AG                             ++   TL     +
Sbjct: 417 KPVSDVAGSLKVAISDAGKIAAAGADDGGRGDNDNAKKLLDLQTRKLVDGKATLTGAYAS 476

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +    + +         +   ++    +  GVNL EE   L++ +Q Y  + ++I 
Sbjct: 477 LVSNVGNQTATAKSNSAAQGNIVKQLTVQQQSVSGVNLDEEYGELLRFQQYYMANAQVIQ 536

Query: 467 FTDKMLQTLLEG 478
               +   +L  
Sbjct: 537 TASSLFDAILSI 548


>gi|95928660|ref|ZP_01311407.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95135450|gb|EAT17102.1| Flagellar hook-associated protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 465

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 79/487 (16%), Positives = 162/487 (33%), Gaps = 36/487 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVT 51
            L+   N  +     + +       N+ NA  + Y R+    + SP              
Sbjct: 3   GLIGALNTGKTGLMVSQKGIEVTGNNLTNASTEGYSRQVLKVSSSPALEHNGIIVGHGAV 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V     +      K L   S   G+Q  +       E ++     N      I+   ++ 
Sbjct: 63  VTAIARQESVFVTKQLINKSGDYGEQAAMAEPLGELERIAGISDDN--LVADINAYFEAW 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++ S   S  +  + VI   + + + F +   ++ ++  + +  I  E+  + +   ++ 
Sbjct: 121 QALSNEPSGTVERQEVIQMGKNIAKTFASMDADLNELTENINVSIAAEVDTINQMADQIA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I    A    A+   D RD LLQ++SE++GI+T    +  + V  S G  L E  
Sbjct: 181 SLNLRIVSTEAGGTSANGLRDDRDQLLQELSELVGINTYEGGSGMVSVQLSSGLPLVEGG 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                     S +       + +D    +   G     G+IK L+ +RD+ +P  ++ LD
Sbjct: 241 IAS-----SMSSSRVDGLTTLSLDMGATTVELGLDDFGGEIKGLMSVRDNEIPQVRDSLD 295

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L    +       + +  PG+                          +    + L
Sbjct: 296 RLAYTLANEVNAVHEAGVDLDGNPGVSFFSYSTSTAADAE-----------AWTGAAATL 344

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               + + +      + +G            +   +           T  E+       +
Sbjct: 345 AVAITQTDQVAAGATSSSGDNTNTLAMVALQDAEVV--------DGSTFNEFYSQIASKV 396

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +      +Q     +     + VGV+  EEL  L + +  Y  + + I   ++M
Sbjct: 397 GLAVDQNTYELETAQDALVQVQNMRDSAVGVSTDEELLLLTQYQTGYRAAAQYINAINEM 456

Query: 472 LQTLLEG 478
           L T+L  
Sbjct: 457 LDTMLTM 463


>gi|119947171|ref|YP_944851.1| flagellar hook-associated protein FlgK [Psychromonas ingrahamii 37]
 gi|119865775|gb|ABM05252.1| flagellar hook-associated protein FlgK [Psychromonas ingrahamii 37]
          Length = 454

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/480 (13%), Positives = 155/480 (32%), Gaps = 34/480 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSE 58
           +++N A +  +          +NI NA+   + R+  + +           V V + R  
Sbjct: 2   SIYNIALSGVSANRTALNITAQNIANANTAGHSRQQAVQSSITRSNDVGAGVEVSSIRRM 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   L + ++ +G      S     E +   D +N   +  + +   S+   S   
Sbjct: 62  ADQFIISQLRSSNTELGNSSYSASSLGQLEQIVGLDGFN--LSAGMDQFFSSISEASVAP 119

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                 + V+ +A+ + Q F   ++ +    A    + E  +S +   L  L   + AI 
Sbjct: 120 ESVEFRQQVLSDAQALAQRFKGLSQTLSNQNAQLASDRENNLSMVNGLLDNLAQSSKAIM 179

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
                  +     D RD +L ++S++I ++     N ++ + T++G  L           
Sbjct: 180 EVYNVGGNTATLEDNRDQMLNELSQLIKVNVNKEENGELQLSTNNGQPLLINDKAAEFTT 239

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
                           +G   + +       G++ A+ + +   +    N ++EMA ++ 
Sbjct: 240 TPLPSDPYQAIINATFNGSTFNVSSD---LGGELGAIDKTQKKDLAALHNTINEMAVIVA 296

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              ++      +   +            +      ++        +  + +         
Sbjct: 297 DEVNKSLASGTDLNGLSPGLALFSYDPANPAGSMQMNLLSTDELAFSGDGNP-------- 348

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                                 +       D       N+ L E    S+G +  +   +
Sbjct: 349 ---------------GDGQILANLLDISKTDFSITGAGNINLSEAFSLSVGKIAIDSRQA 393

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  +FN +  S  N  GVN  EE + L+    +Y  + K+I   ++M  ++L  
Sbjct: 394 QQNLDSNTALFNQVQASRENLSGVNSDEEAANLMIYANAYEANMKVISTANQMFNSILRA 453


>gi|209967001|ref|YP_002299916.1| flagellar hook-associated protein FlgK, putative [Rhodospirillum
           centenum SW]
 gi|209960467|gb|ACJ01104.1| flagellar hook-associated protein FlgK, putative [Rhodospirillum
           centenum SW]
          Length = 526

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/521 (15%), Positives = 182/521 (34%), Gaps = 46/521 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL    + A +         A++ +N  N     Y R+           +   V     
Sbjct: 1   MSLSVAISSAISGLRATQNNIATVSQNTSNIQTPGYTRKFVTQEAQVHTPTTGGVRTGQV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +        + L    S       + +  +  E +        S +  ++ LRD     +
Sbjct: 61  QRTFDQALYRELLQRESQAAHLETVSTTLSSIEKLQGSPESQTSISARLADLRDDFIGLA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                  L   V+++A+    + NT A  +   R++    I   I  +   L+++  ++ 
Sbjct: 121 AKPESVELQADVVNSAQIFAASMNTVANAIIDKRSETQDAIVNTIDTVNGLLTDIAQLDR 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     ++    D  D+RD+ ++ +++++ +  + R +  M++ T  G TL + VP  +
Sbjct: 181 QIFQTQGTQQGTADLQDRRDLKIRDLAKLVDVVALERADGTMLLMTRGGATLLDRVPNYL 240

Query: 236 NFEKM-------NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +              +      PI +       +    +  G++  LL++RD ++P  Q 
Sbjct: 241 STSPSRIAASSYYDPSGAGGIAPIRLGDPNTGVDITQDLRGGQLGGLLELRDDILPRMQA 300

Query: 289 QLDEMARVLI---------GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +LDE+A ++             +    +  +++ V       G  D    +      +  
Sbjct: 301 ELDELAHMVAVRFKGKTAPDDGAPGLTLFTDTDGVSIPGDVSGSVDYAPPILYVGFASRI 360

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-------------------------GYPDL 374
              Q     + L   G      +      +                         G  + 
Sbjct: 361 RVGQAVMENAELVRYGDGGAPKVPPASGSSPPDPIAGSTIFLKNVVDHVFGTTTLGGSNH 420

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           I         N   +  + I  NV+L+++A++ +         +     ++  +   +  
Sbjct: 421 IAFNTQGLGANPRRNLTSSIPANVSLIDFAQSVLVKQSSEAGWAKARATEATAMKEELDF 480

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            YS+  GVNL EE+  L  +++SY  S+++I   ++M  +L
Sbjct: 481 RYSDKTGVNLDEEVVMLTVLQRSYAASSRVITTVEQMYDSL 521


>gi|114765248|ref|ZP_01444380.1| flagellar hook-associated protein K [Pelagibaca bermudensis
           HTCC2601]
 gi|114542383|gb|EAU45411.1| flagellar hook-associated protein K [Roseovarius sp. HTCC2601]
          Length = 470

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 186/481 (38%), Gaps = 13/481 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-TVVTQRSEN 59
           MSL+   N A++  + +S+   ++  NI NA+N +Y RR+T  T + +    V       
Sbjct: 1   MSLITALNAARSGMSTSSRWAETVSTNIANANNASYARRETQVTTNVQGAAQVSEITRAV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
               D +         +Q  + +       +  D    ++    ++  + SL   + + +
Sbjct: 61  DGALDAMYRGEVGRTAKQDAIAAGLESYTSLLGDTESTDTVLTRLTDFQSSLGLLAVSPA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +  L +  + +A+E+ Q  N +   +      A   I  +++ +   L ++  +++ +  
Sbjct: 121 DTALQRATVGDAQELTQALNRAGANLDAALDRAGDGISSDVAAVNSTLEKIAGLSERLAG 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
           +  S        D+    L  +SE I  +T   +   + ++T  GT L      +     
Sbjct: 181 QGQSADARLALQDELGAELDALSEYIDFTTRTDSKGRIEIFTGGGTALITGGEAETLSFD 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++  +T+    I              + +G +   +++  +V+P  ++QLDE+AR LI 
Sbjct: 241 TDTGILTAGEIEITPGVAGKRG-----ISEGSLSGKIELVTTVLPEMRSQLDEVARALID 295

Query: 300 SFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                D   A     +     A      +  L   IS    V P+   +   +RD     
Sbjct: 296 GMVAADASLAAGEAGLFTDNGAALSDPFEPGLASRISVNDAVVPESGGSLWRIRD----- 350

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +    AG    +  + D+ +    FD   G+  N++L  Y    I      R+ +
Sbjct: 351 -GLGADAPGPAGDNTQVTAFLDTLDGAMNFDESLGLGDNMSLSSYISTLIASQNTTRASA 409

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                        +  S  + +GVN+ +EL  L  ++QSYN + + +    +ML TLL  
Sbjct: 410 ETSAESLAAGAIAVQSSRLSFMGVNVDDELQQLAAIQQSYNANAQTLSVVSEMLDTLLSA 469

Query: 479 V 479
           +
Sbjct: 470 I 470


>gi|261341488|ref|ZP_05969346.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316284|gb|EFC55222.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus
           ATCC 35316]
          Length = 456

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 72/484 (14%), Positives = 147/484 (30%), Gaps = 40/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A +    A    +    NI NA    Y R+  + +               V V +
Sbjct: 2   NMINIAWSGLQAAQFGMSVTSMNISNALTPGYSRQGIIQSSVVTMGQGGMSAGAGVQVES 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S      +   + +  E +   D  + S    +     +L + 
Sbjct: 62  IRRVSDQYLTNQVWQSNSKASYYGINNQYLSSLEKVIGTD--STSLGTGLDDFFSALSAL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +K    +   + +++ A  +   FN     +   +     +    +  +    + +   N
Sbjct: 120 TKEPESEASRQQLLNQAGSLATRFNNMNDFINSQKTSVTNQRNTMVGQINSLTAGIADYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    ++  +++   DQRD L++++S    +     +N    V   +G  L       
Sbjct: 180 KKIMEMDSTGGNSNVLRDQRDELVKQLSTYADVKVTEDSNGSYAVAMKNGQPLVSGKVAG 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  S ++    NP+       +S   +    G++ AL       +   Q+ +  MA
Sbjct: 240 EL-----SSSLDGNGNPVLSLNFSNTSFSLNPSTGGQLGALYDYETGELAQMQSSVQGMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +   F+++     +    PG  +          + Q                  + D 
Sbjct: 295 EAVATLFNDQLAKGFDKNGNPGKPLFTFDLKNPAGILQ------------------VNDL 336

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                    N        +L         K        G   N++L E A   I  +   
Sbjct: 337 KQDELALSDNPDEQGNDGNLQE-----LIKIKNQKVDIGGMGNMSLNEGAAAIISNIGIA 391

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              S      +Q V +      +N   VN  EE   L    Q+Y  + K+I   +++   
Sbjct: 392 SKKSKSELEAAQGVLDQAQLQRNNLSAVNNDEEAINLQVYMQAYQSNVKVIATGNQIFND 451

Query: 475 LLEG 478
           LL  
Sbjct: 452 LLGL 455


>gi|288962672|ref|YP_003452966.1| flagellar hook-associated protein 1 [Azospirillum sp. B510]
 gi|288914938|dbj|BAI76422.1| flagellar hook-associated protein 1 [Azospirillum sp. B510]
          Length = 465

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 101/484 (20%), Positives = 180/484 (37%), Gaps = 25/484 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MS+      A +      QQ A +  N+ NA    YVRR+   +          V V   
Sbjct: 1   MSVQLALTAALSGLRTTQQQAAMLSHNLANATTAGYVRRELDLSAVTTAGRGAGVRVDAV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +   +  +     +S    Q+   S  A   ++        S +  +SKL+ +     
Sbjct: 61  ARKVDELLIRDARFETSRYTGQQARASALADYALVLGQPQDEKSVSTQLSKLQQAFSRLH 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              ++D     V+  A  +    N +A+  Q + ADA   ++  +  +   L  ++ +N 
Sbjct: 121 DMPNDDAARNAVVSQASALADGLNRNAQAAQTVLADAKDRLQTSVDAVNGSLQRVSELNG 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        DA D  D+RD LL ++S+ IGI T  R +  MVV T +G TL +      
Sbjct: 181 RIATLETRGGDAGDLRDERDRLLDQVSQEIGIRTYSREDGQMVVMTRNGQTLLDHPLA-- 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                    +T     +  +GV +S+   S +  G+I   +Q     +P    QLDE+A 
Sbjct: 239 ----PGEQPLTLVGGEVTANGVALSAKPDSEIQSGRIMGYVQTIKQDMPRALAQLDELAA 294

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L+  F         +E  P                 G++  I VN   ++    ++   
Sbjct: 295 GLVQGFQ-------GAEADPTKPGLFTDAGAAYGATAGLASRIAVNGVVKTESWRIQ--- 344

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                         G    I  +   F     F     +  + TL  YA   +   +  R
Sbjct: 345 ---SGVQAAAALKPGDQTQIEKFQAVFTAARGFTA-TDMPASATLGSYATAMVSAQQGYR 400

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +       ++  + +  +  N  GVN+ +E+  L+ +EQSY  S +++    +M+  L
Sbjct: 401 TGAESEMNARKISADTLESARINRDGVNIDDEMQKLLLIEQSYGASAQVVQVAGRMIDVL 460

Query: 476 LEGV 479
           L+  
Sbjct: 461 LQIK 464


>gi|296531743|ref|ZP_06894568.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC
           49957]
 gi|296267926|gb|EFH13728.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC
           49957]
          Length = 485

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 176/480 (36%), Gaps = 5/480 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-----MTTISPENVTVVTQ 55
           M++ A  + A +      +Q A +  NI NA+   YVRRD      +       V     
Sbjct: 1   MTISAALSNALSSLAAEQRQAAILSNNIANANTPGYVRRDMPRSERLVAGIGSGVDTAIT 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +            +  ++      L+        +        S +  +   + ++ + S
Sbjct: 61  QRLGDAALAAASRSADASEAYALQLKQGLETYNALIGQPSDQRSLSSRLGAFQTAMTTLS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                 +     ++ A ++V   + +   V K RA+AD ++  E+  +   L +L   + 
Sbjct: 121 SAPDNAVAQSQALEAARDLVDALHDADAAVAKARAEADLQLSREVGAINSALDQLAETDR 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +   +A      ++ D+RD LL +I   I I         ++V +  GT+L ++     
Sbjct: 181 RMALASARGGSTAEYEDRRDTLLAEIGRKIPIRIFDNGPGHLLVMSDGGTSLLDSTVVHR 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                       + +P  +  V V          G +   L++RD+ +P F + LD++A 
Sbjct: 241 LNFTHTPVVQAEQRHPAALSAVTVEGQALRVTETGSMAGALRLRDTTLPNFIDMLDQVAV 300

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            LI SF + DP    ++            D        I     +      +P       
Sbjct: 301 RLIESFQDADPTLTGNQAGLFTDAGAANWDGSGGYASFIGMARKIAINAAVDPDQGGQLW 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            +        +  A     I    D+ N    +D   G+  ++TL + A  SIG ++  R
Sbjct: 361 RLRTGVNAVAQGNAADNTNIIAALDAMNVVRSYDSNTGLPASMTLSQAASQSIGLMQGER 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +   D       +     +  SN   VN+ EEL  L+ V+Q+Y+ S ++I    +ML  L
Sbjct: 421 AVWSDRAETRGRLAAEARQELSNKTAVNVDEELQRLLLVQQTYSASVQIIQAATRMLDEL 480


>gi|260466602|ref|ZP_05812790.1| flagellar hook-associated protein FlgK [Mesorhizobium opportunistum
           WSM2075]
 gi|259029608|gb|EEW30896.1| flagellar hook-associated protein FlgK [Mesorhizobium opportunistum
           WSM2075]
          Length = 470

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 241/469 (51%), Gaps = 4/469 (0%)

Query: 15  NNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
            N ++Q + + RNI +A N +Y RR ++ T +      V  +    ++  +      SA 
Sbjct: 1   MNTARQTSVVSRNIADASNPDYTRRISVITSTAPGARFVDVQRAANDLLFRQNLGALSAY 60

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             Q  L S     ++        +SP+  I+ L+ +L+ Y+ + S   LG +VID A++V
Sbjct: 61  SGQNALYSGMDQLDVSVNGVDNASSPSAAIANLQQALQLYATSPSNQNLGSSVIDAAKQV 120

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           V++ N  ++ +Q  R   D +I+  + +L   L +    N A+   T S  D  D LDQR
Sbjct: 121 VRSLNEGSKAIQDFRTQTDGQIDTAVKDLNSLLGQFQDANQAVMSGTRSGTDVSDALDQR 180

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           D LL+KIS  + IST  R +NDMV+ T DGTTLFET+PR ++F     Y   +  N ++I
Sbjct: 181 DALLKKISNYVPISTFTRGDNDMVITTGDGTTLFETIPRTVSFTPAAGYAAGAAGNTVYI 240

Query: 255 DGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           D V +S+   G+    G +  LLQ+RD V    Q+QLDE AR LI +F+E  P   N+  
Sbjct: 241 DNVPISAGTGGNTTASGTLAGLLQLRDGVASTMQSQLDETARGLITAFAETAPSMPNAAG 300

Query: 314 VPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
           +     A  +     L N L   IS    ++P    NP+ LRDGG+    ++ N    A 
Sbjct: 301 LFTWSGAPAVPAAGTLVNGLAGTISINAAMDPSVGGNPTLLRDGGANGLAYVANTTGGAS 360

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
           Y +L+  Y D  +K   FD  AGI+   ++ +YA NSIGWL+  R  +       + +  
Sbjct: 361 YSNLLIAYGDQLDKPMTFDSAAGISATSSVSDYAANSIGWLQSVRQQASTAADAKEALAQ 420

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +++ SN  GVN+ +E+S ++ +E +Y  S +++   D M+  LL  V
Sbjct: 421 RSADALSNATGVNIDQEMSLMLDLEHTYQASARMMKTVDDMMTALLSAV 469


>gi|157371201|ref|YP_001479190.1| flagellar hook-associated protein FlgK [Serratia proteamaculans
           568]
 gi|157322965|gb|ABV42062.1| flagellar hook-associated protein FlgK [Serratia proteamaculans
           568]
          Length = 548

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 80/551 (14%), Positives = 175/551 (31%), Gaps = 77/551 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  N A    +++  NI N +   Y R+  +   +             V
Sbjct: 1   MS-NSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTAILAQNGGMSTMNGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV +   E        L    S  G Q     FE + ++ +      N+ +  +     +
Sbjct: 60  TVTSVNREYNQFITNQLRGAQSQAGAQN--AYFEKISQIDNLLASKTNTLSTNMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           LE+   N  +D   +TV+  A  +V  FN + + ++ + +  ++++    + +  +  ++
Sbjct: 118 LENLVSNAGDDAARQTVLGKANGLVNQFNNTDKYLRDMDSGVNQQLSDSATQINSYSQQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +ND I     S  + +  LDQRD L+ ++++++G+    ++ +   V  ++G TL + 
Sbjct: 178 AKLNDEITRLRGSGGEPNALLDQRDQLVTELNQVVGVQVTQQDGDAYTVSFANGLTLVQG 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S          +  G  VS      +  G +  +L+ R   +   +NQL
Sbjct: 238 NNAYQVEAIPSSGDPAR-LTIGYNRGNGVSEVPEGQITSGSVSGVLKFRTESLDGARNQL 296

Query: 291 DEMARVLIGSFSEKDPIA----------------------------------GNSENVPG 316
            ++A  +  SF+++                                              
Sbjct: 297 GQLALAMADSFNQQHRAGFDLNGDAGTDFFNFGGGRVVDNSRNTGDAALSVSYTDTGKVK 356

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                   D  N     + + + VN    ++            K              + 
Sbjct: 357 ANDYRVEFDGSNWQVSRLPDNVKVNATAGTDADGKATLSFDGLKVGIEGNAQKNDSFTVK 416

Query: 377 HYCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNS 407
              D      +    +                              ++   T      + 
Sbjct: 417 PVSDVAGSLKVAITNSSNIAAAGKDDSGRGDNENAKKLLDLQTKKLVDGKATFSGAYASM 476

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    + +         +   ++    +  GVNL EE   L++ +Q Y  + ++I  
Sbjct: 477 VSSVGNQTASAKVSVTSQNNIVKQLTIQQQSASGVNLDEEYGELLRFQQYYMANAQVIQT 536

Query: 468 TDKMLQTLLEG 478
              M   LL  
Sbjct: 537 ASSMFDALLNI 547


>gi|330501143|ref|YP_004378012.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina
           NK-01]
 gi|328915429|gb|AEB56260.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina
           NK-01]
          Length = 455

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 67/486 (13%), Positives = 146/486 (30%), Gaps = 40/486 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53
           MS+L     A +    +    A+  +NI N     + R  T+T        +        
Sbjct: 1   MSILN--QIAYSGVRASQVALATTGQNIANVKTPGFSRLQTITGSLAGQGGLSVGGGVEV 58

Query: 54  -TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + R       ++ L   ++        Q +    E +       +S +  + +   +L 
Sbjct: 59  ISIRRMTNEFHNQQLWRATTEQNFYSASQQYLTALEALM--SGTGSSISAGLDQFFAALS 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S       L + +I  A  + Q FN  +  +        ++     + +      + +
Sbjct: 117 EASATPGSIALRQQIIGEAGNLAQRFNGLSSNIDAQVKALQEQRTAMATEINGLTENIAL 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    + K D+    DQR+ L+ ++++   +      +  + V  ++G  L     
Sbjct: 177 LNKKIVETESVKGDSTALRDQRESLIGQLTQFAKLRINETPDGSVSVALANGQPLVAGAT 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  M +    S    + +     S         G    L  +    +      L +
Sbjct: 237 AGQLKVAMTA----SGEQEVSLAFAGTSFPLRQDGFGGAFGGLHDVEYGSLRPNLEALHD 292

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  L    ++      +    PG  +          L +    T               
Sbjct: 293 MASQLAQMVNDVLATGFDLNGNPGQPLFAYDPTSTTALLRVEPLTAEQLA---------- 342

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                    L +     G  +++       N+    +      + VTL +     +G + 
Sbjct: 343 ---------LSSAAGETGNNEVLLSLLGLKNQTITLN-----GSQVTLNDAYAGLLGQVA 388

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N   +      +  V         +   V+L EE   L+  +Q+Y  + K+I   +++ 
Sbjct: 389 SNSRQNQADLKSATAVTQQAQSQRDSVSAVSLDEEAVNLMTYQQAYQANMKVISTANQLF 448

Query: 473 QTLLEG 478
             +L  
Sbjct: 449 DDMLSA 454


>gi|325289235|ref|YP_004265416.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964636|gb|ADY55415.1| flagellar hook-associated protein FlgK [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 512

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/515 (14%), Positives = 169/515 (32%), Gaps = 42/515 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M+              +     +I  NI NA    Y R+      S              
Sbjct: 1   MNSFFGLTVGLKGLTASQAALNTINHNISNAGTTGYSRQVVAQKASRALAAANGAGMVGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V + T         D+     ++  G+ ++  S  +  + + +    +      +S   
Sbjct: 61  GVDITTIVQIRNVFLDRRYWQENAQYGEWQVKSSSLSELQSLLSSSSTD-GLDDALSSFV 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +LE  + + S+D    +V   AE      N  A  ++ +R++A+  ++ ++  +     
Sbjct: 120 SALEDLAGDPSDDSARSSVKAEAEAFCTYLNNMASTLEDLRSEANSAVKTKVDEINSLAG 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV---------RNNNDMVV 219
            ++ +N  I     +   A+D  DQR VL+ ++SEI  I             + +    +
Sbjct: 180 RISALNQQIYKAELTGGTANDLRDQRTVLVDQLSEIASIEVSETAVGTLADGQEDLRFSI 239

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTS---------ESNPIFIDGVVVSSNQGSAVPKG 270
             +  + +     + +    ++  + +            N +   G  +  +   A   G
Sbjct: 240 KINGVSLVNHFSVKKLECSAISDGSASDGLYEVRWAETGNEVTFTGGEIKGDLDMAGGDG 299

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           +  A        +P +  QL+  A+ L  +F+E     G +                 + 
Sbjct: 300 QDGAF-----KGIPYYLGQLNTFAQTLAKAFNEGVYADGETYGSGHAGGVGLDDGTGIRF 354

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN------VKNLAGYPDLINHYCDSFNK 384
                 +        ++ + +    + +   L         +  A           +  +
Sbjct: 355 FSYDGLSSEELMAGGTDLASIYGKITAANISLSAEVENDPGQIAASSVSGETENSANLTE 414

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                  +G+  N +  E+       +    S +  +    + +   I  + +   GV+L
Sbjct: 415 LIAMFSDSGVFANGSPEEFINAIYTTIGVETSLAGRISTLHENIAAQIDTNRTAVAGVSL 474

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            EE S LIK + +YN + K++   D++L   +  +
Sbjct: 475 DEETSNLIKYQLAYNAAAKVMSVMDEVLDVTINSL 509


>gi|188995967|ref|YP_001930218.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931034|gb|ACD65664.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 475

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 170/482 (35%), Gaps = 13/482 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MSLLA  + A        +   S  +NI N   + Y +   +    P   V +       
Sbjct: 1   MSLLASLSIAGQSLLTFQRGINSTNKNISNVTTEGYNKETPVFQDLPKSGVYLNKIIRAF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                    + + ++   +         E +  +D      +  ++   +S+        
Sbjct: 61  DQSLFNRSISLNQSVNSDKSYSGILDNIEDVF-NDALGGGFSDTLNTFFNSINDMLIKPD 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +       I NA+ +V    +S + ++ ++     ++  +I+ + +   +L  +N+ IK 
Sbjct: 120 DLAARSQFIANAKVLVGKIRSSNKALEDLKQQTVLKVRDQINQINQITEQLAKLNNLIKT 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
           KT      +++L++RD L+ ++S +I    +   +N + V+T+ G  L   +        
Sbjct: 180 KTLDVESNNEYLNERDRLITQLSNLIDTKVVFNEDNTVNVFTAKGFGLVVGMTNTQL--- 236

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                    +   + +   ++    +    G +K +  I         N+L++ A VL  
Sbjct: 237 QFETDSNGNAIIKWNNTNDITKEIQNGELGGNLKGIDAINGQ-----LNRLNDFATVLAN 291

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNK--LCQGISETICVNPQYRSNPSFLRDGGSV 357
            F++        +   GL       +          I   I    Q     +        
Sbjct: 292 VFNKVHSQGYGLDGSTGLNFFGIDPNSSLSKIDASNIIVAIDDPKQVALATNNAYLNSDN 351

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN-SIGWLEKNRS 416
           +          +    L      +   +        I  N    EY  +  +  +    S
Sbjct: 352 TNGKNLLALKDSINGVLTPTEETALKSSLNDPNNYDIIKNSKFSEYYNSQLVAIISSESS 411

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   +Q +++ I+E   +  GVN+ EEL  L K+++SY  + ++I  TD+++QT+L
Sbjct: 412 RIKTQMKNNQFLYDAITEKMKSLTGVNMDEELINLTKLQRSYQAAARIITVTDELMQTIL 471

Query: 477 EG 478
             
Sbjct: 472 NI 473


>gi|311280011|ref|YP_003942242.1| flagellar hook-associated protein FlgK [Enterobacter cloacae SCF1]
 gi|308749206|gb|ADO48958.1| flagellar hook-associated protein FlgK [Enterobacter cloacae SCF1]
          Length = 547

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/548 (14%), Positives = 177/548 (32%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +    A     ++  NI + +   Y R+ T+   S             VTV
Sbjct: 1   MSSLINSAMSGLGAAQAALNTVSNNIASYNVSGYTRQTTVLAQSNSTLGPGGWVGNGVTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + + +D    NS +  +     SL+
Sbjct: 61  TGVQREYNAFITNQLRAAQNQSSGLTTRYQQMSKIDDVLSDTT--NSLSATLQDFFSSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    ++V+  A+ +V  F  + + ++      +  +   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQSVLGKADGLVNQFKVTDQYLRDQDKQVNSAVASSVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDKISKLTGVGAGASPNDLLDQRDQLVSQLNQIVGVEVNVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 STAHQLAAVPSSADPSRTTVAYVDNVAGNVEIPEKLLTTGSLGGLLTFRSQDLDQTRNSL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADG---------------------------- 322
           ++MA     +F+++     ++   PG    D                             
Sbjct: 299 NQMALAFADAFNQQHAKGVDANGDPGSKFFDIGSPSVLKNTKNTGTANLGATVTDSSKVQ 358

Query: 323 ------IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                   D  N     +++   V P   ++ S   DG +VS     N  +      + N
Sbjct: 359 ATDYNVSWDGSNWQVTRLADNTKVTPTVEADGSLSFDGLNVSVSGTANKNDSFTVKPVAN 418

Query: 377 HYCDSFNKNFIFDPVAG--------------------------INTNVTLLEYARNSIGW 410
              +          +A                           +  N T+ +   + +  
Sbjct: 419 TIVNMDVAITDETQIAMGINDGKSGESDNRNGQALLDLQNSKLVGGNKTVNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S           V   +++   +  GVNL EE   L   +Q Y  + +++     
Sbjct: 479 VGNKTSTLKVSSTTQGNVVTQLTKQQQSISGVNLDEEYGNLQLFQQYYLANAQVLQTAST 538

Query: 471 MLQTLLEG 478
           +   LL  
Sbjct: 539 LFDALLNI 546


>gi|238799422|ref|ZP_04642851.1| hypothetical protein ymoll0001_16400 [Yersinia mollaretii ATCC
           43969]
 gi|238716726|gb|EEQ08613.1| hypothetical protein ymoll0001_16400 [Yersinia mollaretii ATCC
           43969]
          Length = 549

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/550 (13%), Positives = 174/550 (31%), Gaps = 80/550 (14%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56
            N A +  + A    +++  NI N     Y R++ +   +             VTV    
Sbjct: 1   MNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNAIFAQNGGTLSPAGFIGNGVTVTGVN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            E  +     L   SS      L   ++ + ++ +   + +N+ +  +     +L++   
Sbjct: 61  REYNSFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSVTMQDFFSNLQNLVS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +D   KTV+  AE +V  F  + + ++ +    +++I   ++ +  +  ++  +ND 
Sbjct: 119 NAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKITESVTKINNYSEQIAKLNDQ 178

Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           I     +S  + +  LDQRD L+ ++++I+G++   ++ +   V  ++G  L +      
Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVAFANGLPLVQGSSSHK 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +S   T  +         V     S +  G +   L+ R   +   +NQL ++A 
Sbjct: 239 IEAIASSSDATRLAIGYKYGSGDVMEVDESRLATGSLGGTLKFRSEALDSARNQLGQLAL 298

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADG--------------------------------- 322
            +  SF+ +     +    PG                                       
Sbjct: 299 AMADSFNTQHKAGFDINGDPGDDFFSFAQPNVLKNSNNQGDASLTVKYTDTSKVKASDYS 358

Query: 323 -----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                      +L                + + L   G             +    L+  
Sbjct: 359 VEFDGTDWQVTRLSDNTKVPANPVKDVNGDTTGLSFDGLDVSIDNGTGGAQSKDKFLVKT 418

Query: 378 YCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNSI 408
             +      +    +                              +++  TL       +
Sbjct: 419 VSNVAANLQVAVTDSSKIAAAGTADGGASDNVNAKALLDLQTKKLVDSKATLSGAYAGLV 478

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    + +         +   ++    +  GVNL EE   L + +Q Y  + ++I   
Sbjct: 479 SNVGNQTNTAKTNSAAQANIVKQLTAEQQSISGVNLDEEYGDLQRFQQYYLANAQVIQTA 538

Query: 469 DKMLQTLLEG 478
             +   LL+ 
Sbjct: 539 STLFNALLDL 548


>gi|218135314|ref|ZP_03464118.1| hypothetical protein BACPEC_03219 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990699|gb|EEC56710.1| hypothetical protein BACPEC_03219 [Bacteroides pectinophilus ATCC
           43243]
          Length = 512

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/508 (15%), Positives = 184/508 (36%), Gaps = 32/508 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49
           S     N A      AS    +   N+ N + K Y R+ T  +             +   
Sbjct: 3   STFFGLNIAYTGLQAASVSINTTAHNVSNVNTKGYSRQQTDVSADNALRTYAKYGTAGSG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V + +    + +D    ++ +  G    +Q++    E    +++     T   +    
Sbjct: 63  VIVNSIQQVRDSYYDVKYRSNETNYGYYNTMQTYMTQLEDYL-NEYTLEGFTKAYADFFQ 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S     +  +E+ +    I+ A+ +   FNT +  ++ ++ D ++EI   +  +    + 
Sbjct: 122 SAIQLQEQPAEESVRNQFINKAQSLADYFNTLSSNLKNVQKDTNEEIGNRVDKINTISTS 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR----NNNDMVVYTSDGT 225
           +  +N  I    A+   A+D  D R+ LL ++S+I+ I T       N N   VY +   
Sbjct: 182 IASLNKQINQIEANHGTANDLRDARNNLLDELSQIVNIETTETPVGVNTNCFKVYINGQV 241

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDG--VVVSSNQGSAVPKGKIKALLQIRDSVV 283
            +       +      +    S+++ ++       +S  + S+   G +KAL++ RD   
Sbjct: 242 LVDNNNSNKLMVTAKENPRNASDADGLYQITWESGMSFGEYSSTLNGSLKALIEARDGCN 301

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI------------ADGIKDLDNKLC 331
              + Q  +     +           N + VP                 + +    N   
Sbjct: 302 GEIEKQTTDANGNPVLETEGVSVNNTNFKGVPYYQSKLNEFVQIFTTAVNDVLAGPNART 361

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD-LINHYCDSFNKNFIFDP 390
               + I +      + +      +V+ + + +   LA   D       +   ++ +   
Sbjct: 362 INGEKGIPLFVSKYEDSAMSASSITVNNELVLDQSKLATTTDENKGESYNDLVESILELR 421

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
              +  N T   +  + +G +  + S +   +     +   +     + +GV+  EE   
Sbjct: 422 DKKMYGNGTGGYFLESIMGDVAIDSSKATQFNKNFTNLKTTVQNQRLSVMGVDQDEEGMD 481

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           L+K +++YN+S K++   +++   L+ G
Sbjct: 482 LMKYQEAYNLSAKMMSVMNEIYDRLING 509


>gi|237757071|ref|ZP_04585515.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690770|gb|EEP59934.1| flagellar hook-associated protein FlgK [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 475

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/482 (16%), Positives = 180/482 (37%), Gaps = 13/482 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MSLLA  + A        +   S  +NI NA  + Y +   +    P   V +       
Sbjct: 1   MSLLASLSIAGQSLLTFQRGINSTNKNISNATTEGYNKETPVFQDLPKSGVYLNKIIRAF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                    + + ++   +         E +  +D   +  +  ++   +S+        
Sbjct: 61  DQSLFNRSISLNQSVNSDKSYSGILNNIEDVF-NDALGSGFSDALNTFFNSINDMLIKPD 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +       I NA+ +V    +S + ++ ++     ++  +I+ + +   +L  +N+ IK 
Sbjct: 120 DLATRSQFIANAKVLVGKIRSSDKALEDLKQQTVLKVRDQINQINQITEQLAKLNNLIKT 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
           KT     ++++L++RD L+ ++S +I    +   +N + V+T+ G  L   +        
Sbjct: 180 KTLDVESSNEYLNERDRLITQLSNLIDTKVVFNEDNTVNVFTAKGFGLVVGITNTQL--- 236

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                  ++SN   +     +++    +  G++   L+  D++     N+L++ A VL  
Sbjct: 237 ----QFETDSNGNAVIKWNNTNDITKEIQNGELGGNLKAIDAINGQL-NRLNDFATVLAN 291

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNK--LCQGISETICVNPQYRSNPSFLRDGGSV 357
            F++        +   GL       +          I   I    Q     +        
Sbjct: 292 VFNKVHSQGYGLDGSTGLNFFGIDPNSSLSKIDASNIIVAIEDPKQVALATNTAYLNSDN 351

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN-SIGWLEKNRS 416
           +          +    L +    +   +        I  N    EY  +  +  +    S
Sbjct: 352 TNGKNLLALKDSIGGVLTSTEETALKSSLNDPNNYDIIKNSKFSEYYNSQLVAIISSESS 411

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   +Q +++ I+E   +  GVN+ EEL  L K+++SY  + ++I  TD+++QT+L
Sbjct: 412 RIKTQMENNQFLYDAITEKMKSLTGVNMDEELINLTKLQRSYQAAARIITVTDELMQTIL 471

Query: 477 EG 478
             
Sbjct: 472 NI 473


>gi|323163692|gb|EFZ49513.1| flagellar hook-associated protein FlgK [Escherichia coli E128010]
          Length = 547

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 158/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------------------- 325
            ++A     +F+ +     ++    G       K                          
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFTIGKPAVLQNTKNKGDVAIGATVTDASVVL 358

Query: 326 -----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  + + P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTATPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + + +   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQALQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|126734126|ref|ZP_01749873.1| flagellar hook-associated protein FlgK [Roseobacter sp. CCS2]
 gi|126716992|gb|EBA13856.1| flagellar hook-associated protein FlgK [Roseobacter sp. CCS2]
          Length = 480

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 174/490 (35%), Gaps = 24/490 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRS 57
           + +  N A       S+    +  N+ NA  + Y RR    +          V V +   
Sbjct: 1   MSSALNNAVTGLTATSRMAEVVSSNLSNALTEGYGRRGVELSSVQVGGRGGGVRVDSINR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                         +A+  Q          E               +++   +L +   +
Sbjct: 61  FVDAGLLADRRLADAALSGQERSVDLVMRLEQAIGGPDDAAGLGARLAEFERALIAAGSD 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            + ++   +V+   E V      +   VQ +R DAD  I  +I  L   L ++  +N  I
Sbjct: 121 PASELRLASVVARLEGVAGTLKANTASVQALRQDADVAIARDIDVLNGALQQVDALNKDI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              + S  D    LD R   + +I+ I+ +  + R+N  + + T+ GTTL ++ PR+  F
Sbjct: 181 LRISGSGDDPSALLDARQRAVDQIAGIVPVREMPRDNGSIGLMTTSGTTLLDSRPREFGF 240

Query: 238 EKMNSYTVTSE-----SNPIFIDGVVVSSNQGSAV-PKGKIKALLQIRDSVVPIFQNQLD 291
           +   + T            I +DGV +    G      G + A   +RD  +   Q+ LD
Sbjct: 241 QNTLTITADMTLASGALGAIKLDGVALDLATGVGRLDGGTLGAAFVLRDQTLVQAQSALD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNP 348
            +   L+  F +            GL    G        + L   IS    + P    N 
Sbjct: 301 GITADLVARFQDSTNDPSLMPGDIGLLTDQGNPLDLSDLSGLAGRISVNPAIVPAQGGNL 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + LRD                G    IN +  + +   +  P A + +    +      +
Sbjct: 361 ALLRD------GLNATTPGPTGDAAQINRWIAALDTPRMDVPGATLASASGRIAAY---V 411

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +   R  + +    +   +  + E+     G++   EL  L+++EQ+Y  + K+I   
Sbjct: 412 SEVGTTRLMAQEQLSFTTARWETLREAELAD-GIDTDVELQRLLQIEQAYAANAKVIQTV 470

Query: 469 DKMLQTLLEG 478
           D M+Q L+E 
Sbjct: 471 DFMMQRLMEL 480


>gi|259417223|ref|ZP_05741142.1| flagellar hook-associated protein FlgK [Silicibacter sp. TrichCH4B]
 gi|259346129|gb|EEW57943.1| flagellar hook-associated protein FlgK [Silicibacter sp. TrichCH4B]
          Length = 482

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 171/486 (35%), Gaps = 12/486 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSE 58
           MSL    + A      A +  + +  N+ NA  + Y RR    + +     V + + +  
Sbjct: 1   MSLSTALSSAMTGITAAGRSTSVVSDNLANALTEGYYRRTLDLSSNGSAGGVRIGSVQRM 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 K + +  +      +   F A         + + S    ++ +  +L   +   
Sbjct: 61  IDPAIQKSVRSAEANFAATSVTAGFYARISDQVGTVNDDYSIAQRMTDMETALIEATSLP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             D     +   A E+  +   +A  V  +R  A+  I   +  L+  L  L  +N  I 
Sbjct: 121 DSDARLNDLSMQAGELAMSIRNAAEGVSTLRNKAEDSIGALVEGLQTNLETLNDLNKKIL 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE-TVPRDINF 237
                  D     DQRD L+  I+E+I +    R+NN   +YT+ G  L +     + +F
Sbjct: 181 AAEIRGQDPSGLEDQRDNLINAINEVIPVQVHKRDNNQTALYTNSGIKLIDGGSVAEFSF 240

Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           ++    T        + + + IDG  + ++    +  G + A   +RD      Q  LD 
Sbjct: 241 DETRLVTPYMSIDNGQLSGLEIDGRSIDTSINGKIGGGSLAAQFHVRDVASVQAQEDLDT 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  LIG F +           PG+F   G           +     +      + S   
Sbjct: 301 MAADLIGRFQDPAVDPTLGATDPGIFTDAGAFFDPVNT---LGAANRIELNEVISMSGSA 357

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   +            G   ++N+Y ++             + + +    A N +    
Sbjct: 358 ETWRLRDGLNATAIGDRGDTTILNNYAEAMEATNTITSPGLGSGDYSAYAIAANLMTNFT 417

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +  + +      S  +++ I        GV+   EL  L+ +E  Y  + +++   D+M+
Sbjct: 418 QENTWAEQELAYSSAIYSDIQSRELEQ-GVDTDAELQTLMMIETVYGANARMLQAIDEMM 476

Query: 473 QTLLEG 478
           Q L+  
Sbjct: 477 QELMRL 482


>gi|295096219|emb|CBK85309.1| flagellar hook-associated protein FlgK [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 546

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/547 (13%), Positives = 167/547 (30%), Gaps = 73/547 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A     ++  NI + +   Y R+ T+   S             V V
Sbjct: 1   MSSLINSAMSGLSAAQSALNTVSNNISSYNVAGYTRQTTILGASNSTLTGGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + + +D    NS +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQNQSSGLTTRYQQMSKIDDVLSDTT--NSLSANLQDFFKSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    +TV+  A+ +V  F T+ + ++   A  +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKTNDQYLRDQDAQVNTAISTSVDQINNYAKQIAN 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V+++    +  ++G TL + 
Sbjct: 179 LNDQISRLTGVGAGASPNELLDQRDQLVSELNKIVGVDVTVQDSGTYNISIANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S      +                 +  G +  LL  R   +   +N L
Sbjct: 239 SNASQLAAVKSSADPARTTIAYVDAAAGNVEISEKQITTGSLGGLLTFRSQDLDQARNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADG---------------IKDLDNKLCQGIS 335
           ++MA     + + +     ++    G  + D                           + 
Sbjct: 299 NQMALAFADAMNTQHQAGFDANGDAGGKLFDFGSPAVLSNGKNTGSASVTATMTDSTKVQ 358

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD------ 389
            T        ++ +  R   + S     +      +  L      S +    F       
Sbjct: 359 ATNYKVEYNGTDWTITRLSDNTSFTAKPDASGNLSFDGLNVKISGSADNKDSFIVKPVND 418

Query: 390 --------------------------------------PVAGINTNVTLLEYARNSIGWL 411
                                                     +  N T  +     +  +
Sbjct: 419 VIVNMDVAISDESKLAMASAKGNGESDNTNGQKLLDLQSAKLVGGNKTFNDAYAALVSTV 478

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               +           V   +++   +  GVNL EE   L + +Q Y  + +++     +
Sbjct: 479 GSTTASLKTSSETKVNVVTQLTKQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTASTL 538

Query: 472 LQTLLEG 478
              L+  
Sbjct: 539 FDALINI 545


>gi|150019110|ref|YP_001311364.1| flagellar hook-associated protein FlgK [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905575|gb|ABR36408.1| flagellar hook-associated protein FlgK [Clostridium beijerinckii
           NCIMB 8052]
          Length = 583

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/584 (14%), Positives = 174/584 (29%), Gaps = 106/584 (18%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L   F  A+   N       +   NI NA    Y R+  +   +             
Sbjct: 1   MSGLFDTFTIAKRGLNVQQGNINTTSHNISNASTTGYSRQRAVVQTTRPFGGTSRFDSCS 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                    + T +       D  +    S  G+     S+    E +  ++  +     
Sbjct: 61  AGQVGTGAEITTIQRIRDVFKDYQVRTQKSDNGKLETKNSYLTQVEDIL-NETSDTGIQQ 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            +S      +S S + ++       +  A+ +    N    ++   ++DA   ++ ++++
Sbjct: 120 ALSDFYKGFQSLSLDPTKSSNRTVALQQAQTLASALNNRYTQLDTKKSDAQGTMQTDVTD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L ++  +N  I   +A     +D +D+RD LL  +S   GI+T   N   M V +S
Sbjct: 180 INSILDQIKDLNQQIAGVSAIGMTPNDLMDKRDNLLDDLSTKFGITTKRENYEAMDVSSS 239

Query: 223 -----------DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-- 269
                      DG  L        ++ +  +   +      +       + +   +    
Sbjct: 240 ELSSPTIGMLVDGNDLTGKNCNRFSYVESATLDTSGNLTVTYSVLGDKKNIKTLTISGAD 299

Query: 270 ----------------------------------------GKIKALLQIRDSVVPIFQNQ 289
                                                   G+I     ++   +    +Q
Sbjct: 300 EALKNEVLEKRILIADKSGIVTPAPTDKASIEKSLFKVEKGEIGGKQAVQ-KDIQTCMDQ 358

Query: 290 LDEMARVLIGSFSEKDPIAGNSE--------NVPGLFIADGIKDLDNKLCQGISETICVN 341
           LD+ A  L  + +     + ++         N P    +              ++ I VN
Sbjct: 359 LDKFAAGLAYAVNAIQTGSTDAASSNSNLKYNDPIFVTSASNGTGAATDIGINAKNITVN 418

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLA-------------------------GYPDLIN 376
               ++PS L  G + +          A                          +     
Sbjct: 419 SVLNTDPSKLNCGETSTDVSGDKAGTRALAIASIKEIKMDLDKIDVTSNSTRKDFFTNTA 478

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                   +     +   ++  TL  Y ++ I  L             S+          
Sbjct: 479 TTGSQLTLDASALKLNSSSSGATLDNYYKSVISNLATVTKGVTSDLSISEKQLETYENDR 538

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  GV++ EE + LI+ + +Y  + K+I   D++L  ++ G+K
Sbjct: 539 LSESGVSIDEETTNLIQFQHAYQANAKVISTVDELLDVVINGLK 582


>gi|99082780|ref|YP_614934.1| flagellar hook-associated protein FlgK [Ruegeria sp. TM1040]
 gi|99039060|gb|ABF65672.1| Flagellar hook-associated protein 1 (HAP1) [Ruegeria sp. TM1040]
          Length = 482

 Score =  187 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 170/486 (34%), Gaps = 12/486 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSE 58
           MSL    + A      AS+  + I  N+ NA ++ Y RR    + +     V + + +  
Sbjct: 1   MSLSTALSSAMTGITAASRSTSVISDNLANALSEGYYRRTLDLSSNGAAGGVRIGSVQRM 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 K + +  +      +   F A         +   S    ++ +  +L   +   
Sbjct: 61  IDPAIQKSVRSAEANYAATSVTAGFYARVSEQVGTVNDAYSIAQRMTDMETALIEATSLP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             D     +   A E+  +   +A  V  +R  A+  I   +  L   L  L  +N  I 
Sbjct: 121 DSDARLNDLSMQAGELAMSIRDAAEGVSSLRNKAEDSIAALVQGLETNLETLNDLNRKIL 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE-TVPRDINF 237
                  D     DQRD L+  I+E+I +    R+NN   +YT+ G  L +     + +F
Sbjct: 181 AAEVRGQDPSGLEDQRDSLIDAINEVIPVQVHKRDNNQTALYTNSGIKLIDGGSVAEFSF 240

Query: 238 EKMNSYTV-----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           ++    T        + + + IDG  + ++    +  G + A   +RD      Q  LD 
Sbjct: 241 DETRLVTPYMTLGNGQLSGLEIDGKQIDTSINGKIGGGSLAAQFHVRDVASVQAQEDLDT 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  LI  F +           PG+F   G           +     +      + S   
Sbjct: 301 MAADLIQRFQDPAVDPTLGATDPGIFTDQGAFFDPVNT---LGVANRIELNSIISMSGSA 357

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   +            G   ++N+Y ++             + + +    A N +    
Sbjct: 358 ETWRLRDGLNATAIGERGDTTILNNYAEAMEATNTITSPGLGSGDYSAYAIAANLMTNFT 417

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +  + +      S  +F+ I        GV+   EL  L+ VE  Y  + ++I   D+M+
Sbjct: 418 QENTWAEQELAYSSAIFSDIQSRELEQ-GVDTDSELQTLMMVETIYAANARMIQAIDEMM 476

Query: 473 QTLLEG 478
           Q L+  
Sbjct: 477 QELMRL 482


>gi|254255092|ref|ZP_04948409.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158]
 gi|124899737|gb|EAY71580.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158]
          Length = 446

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/475 (13%), Positives = 141/475 (29%), Gaps = 32/475 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMF 63
            + +   +    A        RN  N     Y R+    T      V   +         
Sbjct: 2   NIMHIGLSGTLAAQAGLNVAARNTANLLTPGYTRQGVHLTSRVGGGVDATSLVRFADQYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
            +   A ++  G+  + +S     E +      + S    I K   +L   S +++   L
Sbjct: 62  TQQKWASNAPYGRYSVTESHYKQLEGVMGL--GDGSVKAGIDKFFGALSEVSADVTNSTL 119

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            + VI  A+ + ++ N     ++       ++       +      +  +N  I   +++
Sbjct: 120 RRQVIHAADGLAKSMNALQSALRTQLDGTRQQSAATAQEINALAGSIADLNREIANASSA 179

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                + +D+RD  + ++S +  +  + R N  + V  + G  L            ++  
Sbjct: 180 GVTPSELVDRRDEAIDRLSALADVRVVTRANGTVDVDLAGGLPLVSGS----ETATLDVA 235

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                +  + +     +         G +  L +  D V+      +  +A  L    + 
Sbjct: 236 AQPDGTFSLSLAFADTTYPLDGTKIGGALGGLFEFVDDVLIPQTTAIRALAGELAERINA 295

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
           +          PG  + +                           + L            
Sbjct: 296 QLSAGYGMNGEPGKPLFNVDPATGELH-----------------VNALAPDELGFSADPA 338

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
              N A    LI+    S +              V L +     +G +      +  +  
Sbjct: 339 EPGNSANLTKLIDLQRASIDLPGF--------GEVALGDAYTMLVGKVGSQSQQNQTMLA 390

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +  V      ++  T GVN+ EE   + +  Q+Y+ + K+I   +++    L  
Sbjct: 391 MAADVRKQSEAAWLATSGVNMDEEAVNIAEFMQTYSANMKVISVANQLFDVTLAS 445


>gi|258513988|ref|YP_003190210.1| flagellar hook-associated protein FlgK [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777693|gb|ACV61587.1| flagellar hook-associated protein FlgK [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 430

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/492 (13%), Positives = 152/492 (30%), Gaps = 74/492 (15%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS         +               N+ NA+   Y R+                    
Sbjct: 1   MSGTFFGLEIGKRALQANKTGMDVTGNNVANANTTGYSRQRVNLVTGPPYTGSGYQLGTG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V        N  D  + ++ S IG Q   Q+     E +      N     Y++   +
Sbjct: 61  VNVGDIERIRNNYIDGQVRSNLSQIGYQEKEQNVLQKVEALF-PYSVNEGMQVYLNDFFN 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +  ++N  +  +   V++  + +    N S  ++  IR D D E    +S + +    
Sbjct: 120 GWQEVNENPLDKGIQAGVLEKGKALAAAMNQSYEQLGIIRKDVDTEHTDLVSQVGKLTER 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-DGTTLF 228
           +  VN++I    A  ++         +LL ++++++ I   + N+N  +V  S +G  L 
Sbjct: 180 IVKVNESIAKSHAENNNVLLDERD--LLLDRLAKLVKIDATMNNDNKALVDVSVNGVALI 237

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                + N    ++  V      +   G                          +  ++ 
Sbjct: 238 TGTANNFNAANFDTPDVGGSVGSLINTGS------------------------RIDNYKE 273

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +L+++A  +    +                                           +  
Sbjct: 274 KLEKLANAIAEEINGLYT-----------------------------GEGKFFKDLSNAS 304

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                  +   +   N               +    +   D             Y ++ +
Sbjct: 305 DSKTLNNNKIIELDDNASVDPQIALEAAQLRNKKIDSLGEDEGITF------ESYYQDLM 358

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             + +  + +  L    + + + +     +  GV+++EE++ L++ +  Y  ++K+I   
Sbjct: 359 VTIGEESNSAGQLLETYEAIGDQLFAQRESVSGVSIEEEMTNLLQYQYGYQAASKIITTI 418

Query: 469 DKMLQTLLEGVK 480
           D+ML+TLL  ++
Sbjct: 419 DQMLETLLGIIR 430


>gi|323137000|ref|ZP_08072080.1| flagellar hook-associated protein FlgK [Methylocystis sp. ATCC
           49242]
 gi|322397761|gb|EFY00283.1| flagellar hook-associated protein FlgK [Methylocystis sp. ATCC
           49242]
          Length = 490

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 140/490 (28%), Positives = 231/490 (47%), Gaps = 10/490 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSEN 59
           M+L      A       S Q + + RNI NA       + +    +P      +      
Sbjct: 1   MTLTNASIIAGQSLGTISSQISVVSRNISNAGRPGVNAKYSQIATAPNGSAEFLGVGRMA 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSLESYSKN 117
                + + + ++A G    +       +  +  ++   + SP   I++L  +L++YS  
Sbjct: 61  NVALFRSMLSATAAQGSAAQISDALDQIDRALNLSNPAQSRSPASMITRLTTALQNYSAA 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
              +   +  +  A +VV + N + +  Q IR  AD++I   + ++   L++ + +N  I
Sbjct: 121 PDNETAAELALAAARDVVASLNDATKTNQGIRRQADEDIASSVKDVNDILAKFSALNREI 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              TA+  D  D LDQRD LL ++S  IG++T+ R NNDMV+YT  G TLFET PR + F
Sbjct: 181 VEGTAAGADITDQLDQRDALLTQLSNEIGVTTVTRPNNDMVIYTDSGVTLFETTPRSVTF 240

Query: 238 EKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           +   + T   E   ++IDGV V+ ++   A+  G I    Q+RD   P FQ QLDE+AR 
Sbjct: 241 QPTPTLTAGVEGAAVYIDGVQVTGADSPLALKSGAINGFAQVRDVTAPQFQKQLDEIARG 300

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL-----CQGISETICVNPQYRSNPSFL 351
           L+ +F+E D   G    +PGLF   G       +        I+    V+P      S L
Sbjct: 301 LVAAFAETDQTGGGGAPLPGLFTYPGAPGAPGSMLIPGLAGQITINANVDPDKGGVVSRL 360

Query: 352 RDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           RDGG S +  +++N    A Y + +    ++ +    FDP AG+  + +L   A  SIGW
Sbjct: 361 RDGGISGNPDYVYNKSGGAAYSERLLQLVNAPSTQQGFDPGAGLGASGSLNAIAAGSIGW 420

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L   R+ +         +    +++ SN  GVNL +++S ++ +E SY  S KL+   + 
Sbjct: 421 LGAQRAQAEKNVTYQDAMVAQTTQALSNATGVNLDDQMSQMLALENSYQASAKLLETINA 480

Query: 471 MLQTLLEGVK 480
           M  TL   V+
Sbjct: 481 MFDTLFAAVR 490


>gi|218694616|ref|YP_002402283.1| flagellar hook-associated protein FlgK [Escherichia coli 55989]
 gi|307310140|ref|ZP_07589790.1| flagellar hook-associated protein FlgK [Escherichia coli W]
 gi|218351348|emb|CAU97054.1| flagellar hook-filament junction protein 1 [Escherichia coli 55989]
 gi|306909858|gb|EFN40352.1| flagellar hook-associated protein FlgK [Escherichia coli W]
 gi|315060360|gb|ADT74687.1| flagellar hook-filament junction protein 1 [Escherichia coli W]
 gi|320200978|gb|EFW75562.1| Flagellar hook-associated protein FlgK [Escherichia coli EC4100B]
 gi|323379079|gb|ADX51347.1| flagellar hook-associated protein FlgK [Escherichia coli KO11]
          Length = 547

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 155/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPI--------------------------------AGNSENVPGLF 318
            ++A     +F+ +                                        +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN                  + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWHVTRLASNTTFSVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|90418364|ref|ZP_01226276.1| putative flagellar hook-associated protein FlgK [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338036|gb|EAS51687.1| putative flagellar hook-associated protein FlgK [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 499

 Score =  186 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 129/498 (25%), Positives = 220/498 (44%), Gaps = 20/498 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MSLL+ F+ A    ++ + Q A + RNI NAD+    R+    T+     V +++     
Sbjct: 1   MSLLSAFSNATASLSSVASQSALVSRNIANADSPYATRKYAGLTVGQTGGVRIMSIAQSG 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                + L   +SA+G   +          +  D     SP   +S L+ +L  ++ +  
Sbjct: 61  DQALFRSLITTNSALGSASVSAQSLNRIREVIGDVDSPTSPAATLSSLKAALSQFAVSPE 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                +  ++ A ++  + N +   VQ  R DAD +++L   ++ R L E   +N  I  
Sbjct: 121 NGQTAEAAVNAARDMALSLNRATSAVQSARKDADDQLDLAAKDMNRLLGEFGTLNAKIMA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            +AS  D  D +D+RD +++ +S  +G++  VR  NDM +YT  G T+F+   R + F  
Sbjct: 181 GSASGSDVTDAVDRRDQIVRTLSGYVGLNVQVRAGNDMALYTDSGITMFDKTARSVEFTP 240

Query: 240 MNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +Y  T   N   IDGVVV  ++    +  G +  L+ +RD     FQ QLD +A  L+
Sbjct: 241 QPAYDATVAGNSFKIDGVVVAGASSPMPIKGGSVYGLITLRDETAATFQGQLDGIAYALV 300

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC------------VNPQYRS 346
            +F+E D  A           A    D  +                          +   
Sbjct: 301 QAFAETDQRAAGDPGYLPGSYAGLFTDGGSNAIPASMAGAKGLAGTIQIAAGVDPTKPGG 360

Query: 347 NPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
            P+ LRDGG             +N    +G+   +N     F+    FD   G  ++ TL
Sbjct: 361 EPARLRDGGIAFAGTANEQYFSYNANGSSGFTGRLNDLIAGFSMPRSFDAAFGAGSSATL 420

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            EY  +SIGW E  R+ ++D      V+ +   E+ S+  G+N+ +E++ L+ +E+SY  
Sbjct: 421 TEYTASSIGWFEGRRATANDASSYQTVLLSRTQETLSDATGINIDDEMTRLLDLERSYQA 480

Query: 461 SNKLIMFTDKMLQTLLEG 478
           S+KLI    +M+ +LL  
Sbjct: 481 SSKLISTVGQMIDSLLAI 498


>gi|86136708|ref|ZP_01055286.1| flagellar hook-associated protein [Roseobacter sp. MED193]
 gi|85826032|gb|EAQ46229.1| flagellar hook-associated protein [Roseobacter sp. MED193]
          Length = 471

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 173/475 (36%), Gaps = 11/475 (2%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENKNMFDKVLH 68
                  ++       N+ NA    Y  +    + S     V +                
Sbjct: 1   MTGLTANARLSQVTSENLANALTPGYSSQKLNLSSSQYAAGVRIGDVERNIDPALQSTTR 60

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
              +   +  +  +F +           + S +  IS    +L               + 
Sbjct: 61  KAEAEYAKVEVYANFYSRMSNFVGTVDDSTSISAQISNFDSALVEAISRPDSTERLHDLS 120

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
             A  VVQ+   +A  + + R  A+  I+L++  L   L EL  +N  I    A+  +  
Sbjct: 121 VKAGLVVQSITDAAEGLNQQREAAESSIDLQVDQLNTQLKELEKLNARIIVSQATGANTT 180

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
              DQRD+L+  +++ I ++ + R+   + +YT  G  L +    +++F+   +      
Sbjct: 181 AMEDQRDLLVDAVNQAIPVNVVQRDQGRIALYTVGGVALLDGKAAELSFDVNRTIEPQMT 240

Query: 249 S-----NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                 + + I+G+ + ++    +  G + A   IRD+V    QN LD MAR L+  F +
Sbjct: 241 QANGLLSGLEINGLAMDTSSTGPLRGGTLIAAFDIRDNVTVEAQNDLDAMARDLVERFQD 300

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
               A       G+F        D     G+S  + +N     +         +      
Sbjct: 301 PALDATIGATDAGIFTDG-GGAFDPSDTVGLSARLELNDLVAMDGQAETWR--LRDGLYA 357

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
             +   G    +  Y ++ ++N           +  L   + + +    ++   ++++  
Sbjct: 358 ATEGDPGDASQLIAYSEAISENRTVSTTKLGLISSDLNTLSASVMSRFARDSDSANNMLS 417

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +   +  ++++     GV+   EL  ++ +E +Y  + K++   D+M+QTLL  
Sbjct: 418 YAATSYTELAQAELAL-GVDSDAELQNMMLIENAYAANAKMLSAIDEMMQTLLRM 471


>gi|146305256|ref|YP_001185721.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp]
 gi|145573457|gb|ABP82989.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp]
          Length = 455

 Score =  186 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/486 (13%), Positives = 150/486 (30%), Gaps = 40/486 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53
           M++L     A +    +    AS  +NI N +   + R  T+T        +        
Sbjct: 1   MTILN--QIAYSGVRASQVALASTGQNIANVNTPGFSRLQTITGSLAGQGGLSVGGGVEV 58

Query: 54  -TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + R    +  ++ L   ++        Q +    E + +    +   +  + +   +L 
Sbjct: 59  ISIRRMTNDFHNQQLWRATTEQSFYSASQQYLTALEALMSGSGSSI--SAGLDQFFAALS 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S       L + +I  A  + Q FN     +        ++     + +      + +
Sbjct: 117 EASATPGSIALRQQIISEAGNLAQRFNGLNSNIDAQIKALQEQRSAMATEINGLTENIAL 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    + K D+    D R+ L+ ++S+   +      +  + V  ++G  L     
Sbjct: 177 LNKKIVETESVKGDSTALRDHRESLIGQLSQFAKLRVNETPDGSVSVALANGQPLVAGPT 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  M +    S    + +     S         G    L ++  + +   Q  L +
Sbjct: 237 AGQLKVAMTA----SGEQDVSLAFAGTSFPLRQDGFGGAFGGLYEVEYASLRPNQQALHD 292

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  L    ++      +    PG  +     +    L +    T               
Sbjct: 293 MASQLAQMVNDVLATGFDLAGNPGQPLFAYDPNSTTALLRVEPLTAEQLA---------- 342

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      +    +G  +++       N+    +      + VTL +     +G + 
Sbjct: 343 ---------FSSAAGESGNNEVLLDLLGLKNQTITLN-----GSQVTLNDAYAGLLGQVA 388

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +   +      +  V         +   V+L EE   L+  +Q+Y  + K+I   +++ 
Sbjct: 389 SDSRQNQADLKSATAVTQQAQSQRDSVSAVSLDEEAVNLMTYQQAYQANMKVISTANQLF 448

Query: 473 QTLLEG 478
             +L  
Sbjct: 449 DDMLAA 454


>gi|116250501|ref|YP_766339.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255149|emb|CAK06223.1| hook associated protein i homolog (agr_c_1014p) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 495

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 262/493 (53%), Gaps = 15/493 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +     SS    Q+ L S     + +   + Y  SP+ Y+   +  L+++      
Sbjct: 61  EALLRQYLKTSSQDSAQQTLLSGLEDLKSIVGGNDYETSPSTYLGVFQQKLQAFRTTPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA ADK+I  ++  L   LS+    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQNVRATADKQIATDVDKLNTLLSDFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T+S  DA   LD+R+  L++IS+I+G++T  R+NNDMV+ TSDGT LFET+PR++ F+  
Sbjct: 181 TSSGADASGALDEREKALKQISQIVGVNTTTRDNNDMVLSTSDGTILFETIPREVTFKSQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + YT T   N +++DGV +    GS     G +++LLQ+RD + P FQ QLDE+AR L+ 
Sbjct: 241 DVYTATIAGNSVYVDGVALPRGSGSTTTGQGSLQSLLQVRDEIAPNFQKQLDEVARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355
            F E++ +AG +        + G  D       G++ TI V+         +P  LRDGG
Sbjct: 301 LFKEQNTVAGPAYVPGLFTWSGGTVDTGATAVAGMAATITVSSRVITSQGGDPMRLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSF----------NKNFIFDPVAGINTNVTLLEYAR 405
                 + N    +GY   ++    +                FD   GI++NV+++E+A 
Sbjct: 361 INLTGLVLNTSGASGYTTELDRLYTALGSDIDFDPAAGTPVGFDATTGIDSNVSIMEFAT 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           NS+GWLE+ RS++      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++
Sbjct: 421 NSLGWLEQYRSNATTAAENTSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480

Query: 466 MFTDKMLQTLLEG 478
              D+ML++LL+ 
Sbjct: 481 NAVDEMLKSLLDI 493


>gi|209547947|ref|YP_002279864.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533703|gb|ACI53638.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 495

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 168/493 (34%), Positives = 262/493 (53%), Gaps = 15/493 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQNI NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +     SS    Q+ L       + +   + Y  SP+ Y+   +  L+++      
Sbjct: 61  DALLRQYLKTSSQDSAQQALLGGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTTPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA ADK+I  ++  L   LS+    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRATADKQIATDVDKLNTLLSDFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TAS  DA   LD+R+  L++IS+I+G++   R+NNDMV+ T+DGT LFET+PR + F+  
Sbjct: 181 TASGADASGALDEREKALKQISQIVGVNATTRDNNDMVLSTTDGTILFETIPRKVTFKSQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + Y  T   N ++IDGV ++   GS    +G +++LLQ+RD + P FQ QLDE+AR L+ 
Sbjct: 241 DVYNATITGNSVYIDGVALARGSGSTTTAQGSLQSLLQVRDEIAPNFQKQLDEVARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355
            F E++     +        + G  D       G++ TI V+         +P  LRDGG
Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGGTAIAGMASTITVSSRVITSQGGDPMRLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----------GINTNVTLLEYAR 405
                 + N   L+GY   ++    +   +  FDP A          GI++NV+++EYA 
Sbjct: 361 INVNGVVLNPTGLSGYTTELDRLYTALGSDIDFDPAAGPAVGFDATTGIDSNVSIMEYAT 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           NS+GWLE+ RS++      S    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++
Sbjct: 421 NSLGWLEQYRSNATTAAENSSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480

Query: 466 MFTDKMLQTLLEG 478
              D+ML++LL+ 
Sbjct: 481 NAVDEMLKSLLDI 493


>gi|254505051|ref|ZP_05117202.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii
           DFL-11]
 gi|222441122|gb|EEE47801.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii
           DFL-11]
          Length = 482

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 122/487 (25%), Positives = 218/487 (44%), Gaps = 12/487 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54
           MSL      AQ+       + + I RNI  A    + ++    +           + V  
Sbjct: 1   MSLSVALQVAQSALAARQTESSVIARNITGAQEPGFSKKSVQLSTMYTSSGQAGGLRVNG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     L   +S    Q+              D     SP   + +L+ +L++Y
Sbjct: 61  VARMADSALYASLLTSTSVGTSQQAKLDGITRMAETIGDTELETSPAALLGELQKTLQNY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + + +  ++ +  + +A+ +  +  +S+  VQ++RA+AD ++   +  +   L EL  +N
Sbjct: 121 ASDPNNSVMAQDTLQSAKNMAASLRSSSDLVQEVRANADSDMATSVREISSLLGELENLN 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   T +  D  D LD RD +L  +SE IGI T+ R N D+VVYT  G TLFET  R+
Sbjct: 181 STIVKGTQNGADVTDALDDRDQVLLALSEEIGIKTMDRANGDIVVYTDSGVTLFETSARE 240

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           ++F    +Y+  +  + + +DGV V+       +  G++  L ++RD     +Q+QLDE+
Sbjct: 241 VSFAPTTTYSPGTVGSAVIVDGVPVTGPGAIMPISSGRLHGLAELRDDTAVTYQSQLDEI 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           AR +I +F E +  AG        +              G++  I VNP    +     D
Sbjct: 301 ARGVIEAFGESNGDAGLFT-----WSGAPAIPPGATHSVGLAADIIVNPNADPDQGGSLD 355

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                    +N    AG+   +     +F+ +  F     ++ + +L  +A +S+ WLE 
Sbjct: 356 RIRDGFSVAYNPAGDAGFSARLQELVGAFDTSRTFAGSVELDPDASLNSFAGSSVSWLEN 415

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            R           V+    +E+ SNT GVN+ EEL+ L++VE++Y  +++LI   D ML+
Sbjct: 416 GRKTLTKNVEIQSVIVGRTAENLSNTTGVNIDEELTLLLEVERAYAAASRLITAVDTMLE 475

Query: 474 TLLEGVK 480
            L+   +
Sbjct: 476 ELMMATR 482


>gi|322421655|ref|YP_004200878.1| flagellar hook-associated protein FlgK [Geobacter sp. M18]
 gi|320128042|gb|ADW15602.1| flagellar hook-associated protein FlgK [Geobacter sp. M18]
          Length = 481

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/500 (16%), Positives = 173/500 (34%), Gaps = 39/500 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           M +  +F+ A +              NI N + + Y R+  +                 V
Sbjct: 1   MGINTIFDIASSGITANRLAIEVTGENISNVNTEGYSRQRVVMENKPVSTANGFALGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +    NM    L   +S   +    QS     E    +   ++     ++    +
Sbjct: 61  EIAAVQRSYDNMLQLQLVNANSTYQESLAQQSALEQIEPSF-NSLTSDGLGTAVANFFGA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  S N S     + V+  A+ +V +F+     +  + + AD  +    + +      L
Sbjct: 120 FQDLSVNPSGSAERQAVLTRAQIMVDSFHQLDSSLTSVASTADNNLVGITAEVTDNARNL 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +VN  I    +   +A++ LDQRD+LL+K+SE +G++  V N+    V  + G  L  +
Sbjct: 180 ALVNTQILATNSVGGNANELLDQRDLLLRKLSEQVGVTYSVANDGTASVTLAGGAQLVSS 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ----------GSAVPKGKIKALLQIRD 280
                 +       VT++     +     ++              A   GK+   +++RD
Sbjct: 240 TRYATLYTNATGAPVTNDIMISGLGSPPPANAPATDTLVGTVGDGATVGGKLGGTMEVRD 299

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           S+VP ++  LDEMA  ++   +         +   G    D        +          
Sbjct: 300 SIVPKYRAMLDEMADEVVTQVNTLHAAGYALDGSTGNDFFDAAGLTSGSIALD------- 352

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   + L      +              +  N    +   +  F   A    + T 
Sbjct: 353 --------AGLSAVKIAAGFPTATDPAPTSSGNNENALKIANLGSTSF---AFSTGSATF 401

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             +  + +  +  +   + ++  ++      ++   ++   V+L EEL  L + ++++  
Sbjct: 402 GNFYSSLVSQVGVDTEGTQNVTTQNAAFLKQLNALRASNSEVSLDEELLNLTRYQRAFQG 461

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           S K++     ML  +L  V+
Sbjct: 462 SAKVVNAATDMLDIVLGMVR 481


>gi|22127321|ref|NP_670744.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM 10]
 gi|45442802|ref|NP_994341.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809049|ref|YP_652965.1| flagellar hook-associated protein FlgK [Yersinia pestis Antiqua]
 gi|108810754|ref|YP_646521.1| flagellar hook-associated protein FlgK [Yersinia pestis Nepal516]
 gi|145597823|ref|YP_001161899.1| flagellar hook-associated protein FlgK [Yersinia pestis Pestoides
           F]
 gi|150260243|ref|ZP_01916971.1| lateral flagellar hook-associated protein 1 [Yersinia pestis
           CA88-4125]
 gi|162420194|ref|YP_001604841.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola]
 gi|165925087|ref|ZP_02220919.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939060|ref|ZP_02227612.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008985|ref|ZP_02229883.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212172|ref|ZP_02238207.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399689|ref|ZP_02305213.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419324|ref|ZP_02311077.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425178|ref|ZP_02316931.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466331|ref|ZP_02331035.1| flagellar hook-associated protein FlgK [Yersinia pestis FV-1]
 gi|218927918|ref|YP_002345793.1| flagellar hook-associated protein FlgK [Yersinia pestis CO92]
 gi|229837414|ref|ZP_04457577.1| Flagellar hook-associated protein flgK [Yersinia pestis Pestoides
           A]
 gi|229840629|ref|ZP_04460788.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842820|ref|ZP_04462972.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900951|ref|ZP_04516075.1| Flagellar hook-associated protein flgK [Yersinia pestis Nepal516]
 gi|270487666|ref|ZP_06204740.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27]
 gi|294502794|ref|YP_003566856.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|21960402|gb|AAM86995.1|AE013948_3 putative flagellar hook-associated protein [Yersinia pestis KIM 10]
 gi|45437668|gb|AAS63218.1| putative flagellar hook-associated protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774402|gb|ABG16921.1| flagellar hook-associated protein [Yersinia pestis Nepal516]
 gi|108780962|gb|ABG15020.1| putative flagellar hook-associated protein [Yersinia pestis
           Antiqua]
 gi|115346529|emb|CAL19406.1| putative flagellar hook-associated protein [Yersinia pestis CO92]
 gi|145209519|gb|ABP38926.1| flagellar hook-associated protein [Yersinia pestis Pestoides F]
 gi|149289651|gb|EDM39728.1| lateral flagellar hook-associated protein 1 [Yersinia pestis
           CA88-4125]
 gi|162353009|gb|ABX86957.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola]
 gi|165913016|gb|EDR31641.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923287|gb|EDR40438.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992324|gb|EDR44625.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206918|gb|EDR51398.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963318|gb|EDR59339.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052193|gb|EDR63601.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055941|gb|EDR65722.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682290|gb|EEO78382.1| Flagellar hook-associated protein flgK [Yersinia pestis Nepal516]
 gi|229690087|gb|EEO82144.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696995|gb|EEO87042.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705537|gb|EEO91547.1| Flagellar hook-associated protein flgK [Yersinia pestis Pestoides
           A]
 gi|262360826|gb|ACY57547.1| flagellar hook-associated protein [Yersinia pestis D106004]
 gi|262364771|gb|ACY61328.1| flagellar hook-associated protein [Yersinia pestis D182038]
 gi|270336170|gb|EFA46947.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27]
 gi|294353253|gb|ADE63594.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|320016705|gb|ADW00277.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 453

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/483 (13%), Positives = 155/483 (32%), Gaps = 43/483 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56
              A +          +   NI N     Y R+    +           +   V V   R
Sbjct: 4   IRTAFSGMQATQAHLNATSMNIANMHTPGYSRQRAEQSAIGADGQGGVNAGNGVNVDGIR 63

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             ++          +S        + +    E+M +++  + S    ++    SL + ++
Sbjct: 64  RLSQQYVVMQEWRANSQQQYYDAGEQYLNAVELMVSNE--STSLATGLNNFFSSLSAATQ 121

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 + + +I++A  +   FN     + + +    ++ ++ +  +      +   N  
Sbjct: 122 LPDSPPMRQQIIESANAMALRFNNVNNFIVQQKKSIGQQRDITVKEINSLTRSIADYNQQ 181

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I    +  ++ +D LD++++ ++K+S +I        +    +    G  L         
Sbjct: 182 ILKNRSDGNNINDLLDKQELQIKKLSGLIETQVNQAEDGTYRISVKQGQPLVNGAVAAEL 241

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               +S       +         ++   +    G++  +     + +   Q+   EMA+ 
Sbjct: 242 AVDTSSVDTKITLH------FSGATQGMNMSCGGQLGGINDYELTTLKKLQDSTQEMAKT 295

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +   F+++     +    PG  +        N + Q                        
Sbjct: 296 VADKFNDQLGKGTDFTGAPGQDLFVFNPSDPNGMLQL----------------------- 332

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      LA +        + F    I         NV L + A   +G++    +
Sbjct: 333 --SAITAEQLALAAHGKPAGDNSNLFELLDIRKTPVTGMKNVPLDDAATALVGYIAITSN 390

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +H     ++   N  +  + +  GVN  EE   L++ +++Y  + K+I   DK+   LL
Sbjct: 391 RNHSELENAENTLNQATRYHESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLL 450

Query: 477 EGV 479
             V
Sbjct: 451 ALV 453


>gi|241203125|ref|YP_002974221.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857015|gb|ACS54682.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 495

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 260/493 (52%), Gaps = 15/493 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQNI NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +     SS    Q+ L       + +   + Y  SP+ Y+   +  L+++      
Sbjct: 61  EALLRQYLKTSSQDSAQQALLGGLEDLKSIVGGNDYETSPSTYLGVFQQKLQAFRTTPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA ADK+I  ++  L   L++    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQNVRATADKQIATDVDKLNTLLNDFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TAS  DA   LD+R+  L++IS+I+G++T  R+NNDMV+ TSDGT LFET+PR + F+  
Sbjct: 181 TASGADASGALDEREKALKQISQIVGVNTTTRDNNDMVLSTSDGTILFETIPRKVTFKSQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + YT T   N +++DGV +    GS     G +++LLQ+RD + P FQ QLDE+AR L+ 
Sbjct: 241 DVYTATITGNSVYVDGVALPRGSGSTTTGQGSLQSLLQVRDEIAPNFQKQLDEVARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355
            F E++  AG +        + G  D       G++ TI V+         +P  LRDGG
Sbjct: 301 LFKEQNTAAGPAYVPGLFTWSGGTVDTGATAVAGMAATITVSSRVITSQGGDPMRLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSF----------NKNFIFDPVAGINTNVTLLEYAR 405
             +   + N    +GY   ++    +                FD   GI++NV+++E+A 
Sbjct: 361 VNATGLVLNTSGASGYTTELDRLYTALGSDIDFDPAAGTPVGFDATTGIDSNVSIMEFAT 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           NS+GWLE+ RS++      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++
Sbjct: 421 NSLGWLEQYRSNATTAAENTSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480

Query: 466 MFTDKMLQTLLEG 478
              D+ML++LL+ 
Sbjct: 481 NAVDEMLKSLLDI 493


>gi|238785491|ref|ZP_04629474.1| hypothetical protein yberc0001_18240 [Yersinia bercovieri ATCC
           43970]
 gi|238713593|gb|EEQ05622.1| hypothetical protein yberc0001_18240 [Yersinia bercovieri ATCC
           43970]
          Length = 549

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/550 (13%), Positives = 171/550 (31%), Gaps = 80/550 (14%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56
            N A +  + A    +++  NI N     Y R++ +   +             VTV    
Sbjct: 1   MNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNAIFAQNGGTLSPAGFIGNGVTVTGVN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            E  +     L   SS      L   ++ + ++ +   + +N+ +  +     +L++   
Sbjct: 61  REYNSFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSVTMQDFFSNLQNLVS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +D   KTV+  AE +V  F  + + ++ +    +++I   ++ +  +  ++  +ND 
Sbjct: 119 NAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKITESVTKINNYAEQIAKLNDQ 178

Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           I     +S  + +  LDQRD L+ ++++I+G++   ++ +   V  + G  L +      
Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVAFASGLPLVQGSSSYK 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +    T  +         V     S +  G +   L+ R   +   +NQL ++A 
Sbjct: 239 VEAIASGSDATRLAIGYKYGSGDVMEVDESRLATGSLGGTLKFRSEALDSARNQLGQLAL 298

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADG--------------------------------- 322
           V+  SF+ +     +     G                                       
Sbjct: 299 VMADSFNTQHKAGFDINGDQGENFFSFAQPNVLKNSNNQGDASLTVSYADTSKVKASDYS 358

Query: 323 -----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                      +L                + + L   G             A    L+  
Sbjct: 359 VEFDGTNWQVTRLSDNTKVPANPVVDVNGDTTGLSFDGLSVSIDNGTTGAQAKDKFLVKT 418

Query: 378 YCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNSI 408
             +      +    +                              ++   TL       +
Sbjct: 419 VSNVAANLQVDITDSSKIAAAGTADGGASDNVNAKALLDLQTQKLVDGKATLAGAYAGLV 478

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    + +         +   ++    +  GVNL EE   L + +Q Y  + ++I   
Sbjct: 479 SNVGNQTNTAKTNSAAQANIVTQLTAEQQSISGVNLDEEYGDLQRFQQYYLANAQVIQTA 538

Query: 469 DKMLQTLLEG 478
             +   LL+ 
Sbjct: 539 STLFNALLDL 548


>gi|310764854|gb|ADP09804.1| Flagellar hook-associated protein 1, FlgK [Erwinia sp. Ejp617]
          Length = 545

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/546 (16%), Positives = 174/546 (31%), Gaps = 73/546 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            +FN A++  +++    + I  NI NA N +Y RRD +   S             V V  
Sbjct: 2   NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +       +  L               +E L E+ +   +   +P+  ++K  ++L+  
Sbjct: 62  VQRGYDAFINNELR--GGITACAGHKTRYEQLAEIDNMLGNDETNPSVSLNKFFEALKEM 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            K+ S     ++       +   FN+S+  +  +    + +I+  + ++     +L  +N
Sbjct: 120 EKDPSAPAARQSAYSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLN 179

Query: 175 DAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVP 232
           + I K  +       D LD RD LL+ +S   GI          M V  +DG  L     
Sbjct: 180 ENIEKIVSQHGTPPADLLDARDGLLEDLSMQTGIKVNEDKLTGRMDVTLADGRPLVSGTR 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 + ++                 +      +  G +  L   R+  +   +N+L++
Sbjct: 240 VYQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQ 299

Query: 293 MARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-- 341
           MA  + G F+           +P            +A+     D  +   ++        
Sbjct: 300 MALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGDASIDARLTAPYTDVKA 359

Query: 342 -------------------------------------------PQYRSNPSFLRDGGSVS 358
                                                           +   L     V+
Sbjct: 360 EDYTITFTNGDWEVKGADGRVVPHTLNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVA 419

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEK 413
           +     V N        +   +  + N     + GI         TL E   + +  L  
Sbjct: 420 ENVSVAVDNGEAIAASDSSDPEEVSNNKNLAKLLGIQDEKLVGKATLTESYASLVSGLGS 479

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + S     +  +  V N ++  + + VGVNL++E   L   E+ Y  + +++     ML 
Sbjct: 480 STSALKADYATAGSVLNELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLD 539

Query: 474 TLLEGV 479
           TLL   
Sbjct: 540 TLLAIK 545


>gi|259907640|ref|YP_002647996.1| Flagellar hook-associated protein 1, FlgK [Erwinia pyrifoliae
           Ep1/96]
 gi|224963262|emb|CAX54746.1| Flagellar hook-associated protein 1, FlgK [Erwinia pyrifoliae
           Ep1/96]
          Length = 545

 Score =  184 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/546 (16%), Positives = 174/546 (31%), Gaps = 73/546 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            +FN A++  +++    + I  NI NA N +Y RRD +   S             V V  
Sbjct: 2   NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +       +  L               +E L E+ +   +   +P+  ++K  ++L+  
Sbjct: 62  VQRGYDAFINNELR--GGITACAGHKTRYEQLAEIDNMLGNDETNPSVSLNKFFEALKEM 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            K+ S     ++       +   FN+S+  +  +    + +I+  + ++     +L  +N
Sbjct: 120 EKDPSAPAARQSAYSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLN 179

Query: 175 DAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVP 232
           + I K  +       D LD RD LL+ +S   GI          M V  +DG  L     
Sbjct: 180 ENIEKIVSQHGTPPADLLDARDGLLEDLSMQTGIKVNEDKLTGRMDVTLADGRPLVSGTR 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 + ++                 +      +  G +  L   R+  +   +N+L++
Sbjct: 240 VYQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQ 299

Query: 293 MARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-- 341
           MA  + G F+           +P            +A+     D  +   ++        
Sbjct: 300 MALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGDASIDARLTAPYTDVKA 359

Query: 342 -------------------------------------------PQYRSNPSFLRDGGSVS 358
                                                           +   L     V+
Sbjct: 360 EDYTITFTNGDWEVKGADGRVVPHTVNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVA 419

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEK 413
           +     V N        +   +  + N     + GI         TL E   + +  L  
Sbjct: 420 ENVSVAVDNGEAIAASDSSDPEEVSNNKNLAKLLGIQDEKLIGKATLTESYASLVSGLGS 479

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + S     +  +  V N ++  + + VGVNL++E   L   E+ Y  + +++     ML 
Sbjct: 480 STSALKADYATAGSVLNELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLD 539

Query: 474 TLLEGV 479
           TLL   
Sbjct: 540 TLLAIK 545


>gi|327193060|gb|EGE59972.1| flagellar hook-associated protein [Rhizobium etli CNPAF512]
          Length = 495

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 165/493 (33%), Positives = 260/493 (52%), Gaps = 15/493 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGSQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +     SS    Q+ L S     + +   + Y  SP+ Y+   +  L+++  +   
Sbjct: 61  DALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTSPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA ADK+I   +  L   LS+    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRAGADKQIATAVDTLNTLLSQFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+  L++IS+I+G+S   R+NNDMV+ T DGT LFET+PR + F+  
Sbjct: 181 TATGADPSSALDEREKTLKQISQIVGVSATTRDNNDMVLSTPDGTILFETIPRKVTFQAQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + Y  T   N +++DGV +    GS    +G +++LLQ+RD + P FQ QLDE+AR L+ 
Sbjct: 241 DVYNATITGNSVYVDGVALPRGSGSTTTAQGSLQSLLQVRDEIAPNFQKQLDEIARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355
            F E++     +        + G  D       G++ TI V+         +P  LRDGG
Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGGTAIAGMASTISVSSRVITSQGGDPMRLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----------GINTNVTLLEYAR 405
                 + N   L+GY   ++    +   +  FDP A          GI++NV+++EYA 
Sbjct: 361 VNVNGVVNNPTGLSGYTTDLDRLYTALGSDIDFDPAAGPAVGFDATTGIDSNVSIMEYAT 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           NS+GWLE+ RS++      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++
Sbjct: 421 NSLGWLEQYRSNATTAAENTSAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480

Query: 466 MFTDKMLQTLLEG 478
              D+ML++LL+ 
Sbjct: 481 NAVDEMLKSLLDI 493


>gi|253702425|ref|YP_003023614.1| flagellar hook-associated protein FlgK [Geobacter sp. M21]
 gi|251777275|gb|ACT19856.1| flagellar hook-associated protein FlgK [Geobacter sp. M21]
          Length = 480

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/500 (14%), Positives = 172/500 (34%), Gaps = 40/500 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M +  +F+ A +              NI N + + Y R+  +                 V
Sbjct: 1   MGIGTLFDIASSGVTAQRLAIEVTGENIANVNTEGYSRQQVIMETKPVTTANGFPLGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +    NM    +   +S+  +    Q+     +    ++   +     ++    +
Sbjct: 61  QIAAVQRTYDNMLQLQMVNGNSSYQENLAKQTALEQIQPSF-NEVTADGLGKALANFFGA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + N S     + +I  ++ +V +F+     + K+   AD  +    +        L
Sbjct: 120 WQDLTTNASGSAERQALITRSQILVDSFHQMDFTLSKVAETADSNLVGITAEATDNARNL 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +VN  I    +   +A++ LDQRD+LL+K+S+ + I++ +  +    V  + G  + ++
Sbjct: 180 ALVNTQILATASVGGNANELLDQRDLLLRKLSQQVEITSTINVDGTASVKVAGGGQIVDS 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----------PKGKIKALLQIRD 280
                 +         ++     +     ++   +              GK+   +Q+RD
Sbjct: 240 TRYATLYTNATGVPAANDIMLSDLGNPPPANVPATDTLVATVGGGAAVGGKLGGTMQVRD 299

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            +VP +  +LDEMA  L+   +         +   G    D        +          
Sbjct: 300 DIVPDYLARLDEMADELVTRVNALHNAGYALDGSTGNDFFDAAGLSAGTIAL-------- 351

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                 + +      + +     +    +G            N++  F        N + 
Sbjct: 352 ------DGTLTGVKVAAALSVPTDPVPSSGNNLNALQLAALGNQSVPF-----TTGNASF 400

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           +    + +  +  +   + ++  +       ++   S+   V+L EEL+ L K ++++  
Sbjct: 401 VNNYNSLVSQVGVDTEGTQNVAGQGASFLKQLNALRSSNSEVSLDEELTNLTKYQRAFQG 460

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           S K+I     ML  +L  V+
Sbjct: 461 SAKVISAATDMLDIVLGMVR 480


>gi|224825783|ref|ZP_03698887.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002]
 gi|224602007|gb|EEG08186.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002]
          Length = 457

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/482 (13%), Positives = 157/482 (32%), Gaps = 39/482 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56
              A +    A     ++ +N+ N     Y R+  + +           +   V V   R
Sbjct: 4   IQNALSGAIAAQAALNTVSQNLSNEMTPGYSRQGVLLSTLVPGAGDRLGAGMGVDVTAIR 63

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             + +  +  +   ++  G+    Q + A  E +        S +  + K   +L + S 
Sbjct: 64  RFSDSYKNLQMWQAAAGQGELAAAQPYFAQLEQVMG--SDGTSLSGGLDKFYSALNAASV 121

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   L + VI  A+ + + FN         +A  +++    ++ +      +  +N  
Sbjct: 122 EPSSVPLRQQVISEADALARRFNNLNGVFATQQASLNEQRSATLAQINTITQSIAALNGK 181

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +    A   +A   LD+RD  +  ++ ++ +    + +  + V    G  L         
Sbjct: 182 VAEADAVGTNASGLLDERDRQIDALAALVDVRVSQQPDGSLSVTLRGGQPLVIGNTAATL 241

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
             + N     + +  + +          +    G++  L Q + +V+    + +  +A  
Sbjct: 242 AAQGNV----NGTQTMTLQFAKERFTLPNDNLGGQLGGLNQYQSAVLQPMTDAVRTLAGE 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L    + +     +     G  +        + + Q                  +    +
Sbjct: 298 LATRTNAQLASGFDLNGQAGAALFVFDAASTSGMLQ------------------VSAIQA 339

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
               F  +    A   +L+     +               NVT+ +      G L  +  
Sbjct: 340 DQLGFSSDPAKPANSDNLL-----ALIAIKDQSIAMTGLGNVTISDAYAQLTGHLAIDSQ 394

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      + VV     +++ +T GVN  EE   L++ ++ Y  + K+I   +++  + L
Sbjct: 395 QNKAGLETASVVRGEAEKNWKSTSGVNSDEEAINLVEFQKMYQANMKVIAVANQLFDSTL 454

Query: 477 EG 478
             
Sbjct: 455 AI 456


>gi|291282102|ref|YP_003498920.1| Flagellar hook-associated protein FlgK [Escherichia coli O55:H7
           str. CB9615]
 gi|290761975|gb|ADD55936.1| Flagellar hook-associated protein FlgK [Escherichia coli O55:H7
           str. CB9615]
          Length = 547

 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++S+I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELSQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +    +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSCADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|51597631|ref|YP_071822.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896765|ref|YP_001873877.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590913|emb|CAH22569.1| putative flagellar hook-associated protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699791|gb|ACC90420.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           PB1/+]
          Length = 453

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 67/483 (13%), Positives = 157/483 (32%), Gaps = 43/483 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56
              A +          +   NI N     Y R+    +           +   V V   R
Sbjct: 4   IRTAFSGMQATQAHLNATSMNIANMHTPGYSRQRAEQSAIGADGQGGVNAGNGVNVDGIR 63

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             ++          +S        + +    E+M +++  + S    ++    SL + ++
Sbjct: 64  RLSQQYVVMQEWRANSQQQYYDAGEQYLNAVELMVSNE--STSLATGLNNFFSSLSAATQ 121

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 + + VI++A  +   FN     + + +    ++ ++ +  +      +   N  
Sbjct: 122 LPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDITVKEINSLTRSIADYNQQ 181

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I    +  ++ +D LD++++ ++K+S +I        +    +    G  L         
Sbjct: 182 ILKNRSDGNNINDLLDKQELQIKKLSGLIETQVNQAEDGTYRISVKQGQPLVNGAVAAEL 241

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               +S       +         ++   +    G++  +     + +   Q+   EMA+ 
Sbjct: 242 AVDTSSVDTKITLH------FSGATQGMNMSCGGQLGGINDYELTTLKKLQDSTQEMAKT 295

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +   F+++     +    PG  +        N + Q  + T                   
Sbjct: 296 VADKFNDQLGKGTDFTGAPGQDLFVFNAGDPNGMLQLSAITAEQLA-------------- 341

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                L +    AG    +    D                NV L + A   +G++    +
Sbjct: 342 -----LADRGKPAGDNSNLFKLLDIRQTPVTGM------KNVALDDAATALVGYIAITSN 390

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +H     ++   N  +  + +  GVN  EE   L++ +++Y  + K+I   DK+   LL
Sbjct: 391 RNHSELENAENTLNQATRYHESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLL 450

Query: 477 EGV 479
             V
Sbjct: 451 ALV 453


>gi|74311643|ref|YP_310062.1| flagellar hook-associated protein FlgK [Shigella sonnei Ss046]
 gi|73855120|gb|AAZ87827.1| flagellar hook-filament junction protein 1 [Shigella sonnei Ss046]
 gi|323165592|gb|EFZ51379.1| flagellar hook-associated protein FlgK [Shigella sonnei 53G]
          Length = 547

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITVANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQELDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFTIGKPAVLQNTKNKGDVAIGATVTDASVVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|300954378|ref|ZP_07166832.1| flagellar hook-associated protein FlgK [Escherichia coli MS 175-1]
 gi|301029703|ref|ZP_07192757.1| flagellar hook-associated protein FlgK [Escherichia coli MS 196-1]
 gi|299877391|gb|EFI85602.1| flagellar hook-associated protein FlgK [Escherichia coli MS 196-1]
 gi|300318614|gb|EFJ68398.1| flagellar hook-associated protein FlgK [Escherichia coli MS 175-1]
 gi|323942551|gb|EGB38718.1| flagellar hook protein FlgK [Escherichia coli E482]
          Length = 547

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMEQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|209773324|gb|ACI84974.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli]
 gi|320659346|gb|EFX26915.1| flagellar hook-associated protein FlgK [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 547

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +    +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSCADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|167574707|ref|ZP_02367581.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis
           C6786]
          Length = 452

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/476 (13%), Positives = 154/476 (32%), Gaps = 32/476 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMF 63
            +     +    A+    +   N  N     Y RR  + +      V        N++  
Sbjct: 2   NLIYIGMSGLRAANWSLRATADNTSNLATSGYSRRGVLLSSGANGGVDTSATLRFNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSA---DDHYNNSPTHYISKLRDSLESYSKNLSE 120
            + L   +  +G+ +  QS+    E +++    +  + +    +     SL + S +   
Sbjct: 62  TQQLWTTNGKLGRHKASQSYLDQLERLTSISLPEGKSKTNDLGMGAFFASLNAASTDPGS 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L + V+D    + + FN     + +   + ++     +  +    + +  +N  I   
Sbjct: 122 SVLRQAVLDATGSMTKQFNNMRSTLNEQLRNIEQARVATVEEINGRAAAIAELNAKIMSG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            A+  D    LDQRDV +  +S + G+  + + N  + V    G  L           + 
Sbjct: 182 QAAGADVSGLLDQRDVAVDALSGLAGVRVVQQPNGTVDVSLGTGQPLVLGNQAATMAVEH 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    S    + +     +    +A   G ++ L  + D V+      L  +   L+  
Sbjct: 242 DA----SGRQTLSLTFGDQTMPVRTASVGGALRGLSDVEDDVLRPQMEALRSLGSQLVDL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            + +     +    PG  +                 T   +         L+        
Sbjct: 298 VNTQLGDGYDMNGKPGKPL----------------ITYDPSTGMLGIDKTLKPDDLAFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + A    LI       +   +          V+L       +  +     ++  
Sbjct: 342 DPDNPGDNANLRALIELGHSKIDVPGL--------GTVSLENATAVMMAKIGSASRENKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           L   +          + +  GV+  EE   +++ ++ Y+ + K+I   +++ +T L
Sbjct: 394 LLETADATRAQAERDWQSVSGVDKDEEAMNILRFKEMYSANMKVISVANELFETTL 449


>gi|86356331|ref|YP_468223.1| flagellar hook-associated protein FlgK [Rhizobium etli CFN 42]
 gi|86280433|gb|ABC89496.1| flagellar hook-associated protein [Rhizobium etli CFN 42]
          Length = 495

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 168/493 (34%), Positives = 261/493 (52%), Gaps = 15/493 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQNI NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +     SS    Q+ L S     + +   + Y  SP+ Y+   +  L+++  +   
Sbjct: 61  DALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTSPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA+ADKEI   +  L   LSE    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRANADKEIATAVDTLNTLLSEFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+ +L++IS+I+G+S   R+NNDMV+ T DGT LFET+PR + F+  
Sbjct: 181 TATGADTSGALDEREKVLKQISQIVGVSATTRDNNDMVLSTPDGTILFETIPRKVTFKSQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + YT T+  N ++IDGV +   +GS     G +++LLQIRD + P FQ QLDE AR L+ 
Sbjct: 241 DIYTATTVGNSVYIDGVALPLGKGSTTTGQGSLQSLLQIRDEIAPNFQKQLDETARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355
            F E++     +        + G  D       G++ TI V+         +P  LRDGG
Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGATAVAGMASTITVSTRVITSQGGDPMRLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNK----------NFIFDPVAGINTNVTLLEYAR 405
             +   + N   ++GY   ++    +                FD   GI++NV+++EYA 
Sbjct: 361 VNAAGVVLNTSGVSGYTAELDRLYTAMTSDMDFDPAAGAPVGFDATTGIDSNVSIMEYAT 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           NS+GWLE+ RS++      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++
Sbjct: 421 NSLGWLEQYRSNATTAAENTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480

Query: 466 MFTDKMLQTLLEG 478
              D+ML++LL+ 
Sbjct: 481 NAVDEMLKSLLDI 493


>gi|293433372|ref|ZP_06661800.1| flagellar hook-associated protein FlgK [Escherichia coli B088]
 gi|291324191|gb|EFE63613.1| flagellar hook-associated protein FlgK [Escherichia coli B088]
          Length = 547

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +  + + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAVRQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|304392492|ref|ZP_07374432.1| flagellar hook-associated protein FlgK [Ahrensia sp. R2A130]
 gi|303295122|gb|EFL89482.1| flagellar hook-associated protein FlgK [Ahrensia sp. R2A130]
          Length = 481

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 127/486 (26%), Positives = 248/486 (51%), Gaps = 11/486 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT--MTTISPENVTVVTQRSE 58
           MSL      AQN   N S+  +++ RNI  +D+ NYVRR+   +   +    T+ ++   
Sbjct: 1   MSLTQALGSAQNSLLNISRGTSTVARNISRSDDANYVRRELSNIAGANRAPQTITSRAQL 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +  +    + A S + GQ+ +    + +   ++  D  ++     +++L++SL+ ++   
Sbjct: 61  DAQLTRTQIDALSRSAGQEVIAGQLDRMAIAINGIDGESSPLAG-LTRLQNSLQVWAARP 119

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S++ LG   +D+A  +V+  N + + V + R   D+  + ++++L   L        AI 
Sbjct: 120 SDETLGGAAVDSARTLVRGLNRAQQAVGEARLSIDRLAQDDVASLNGLLQRFKATERAIA 179

Query: 179 ---FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                + +   A D +D+RD L+++I++I+ +++I R++   ++ TS+G T+F+   R +
Sbjct: 180 GNDDTSLTAEKAMDAMDERDNLIRQIAQIVPVTSIARSDRSTMLVTSNGATIFDDTARTV 239

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMA 294
           +     S  V S+ + + +DGV + + QGS     G +   LQ+RD  +   + QLD +A
Sbjct: 240 SL----SLPVGSQQSRVLVDGVPLPAAQGSDTDARGSLSGYLQLRDGALADQERQLDAIA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             LI  F+E D   G +    GLF   G   +      G + +I ++P + +NP+ LRDG
Sbjct: 296 GQLISQFAETDLSGGGAPPAVGLFTWSGAPAVPGATAIGTARSIAIDPAFEANPNLLRDG 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G+     + N    A + DL+N   D+            I+  +T+ ++A  SIGWL+  
Sbjct: 356 GANGASTVANTSGGASFSDLLNQRIDALETPAAIGSATQISGTLTISQFASQSIGWLDGA 415

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           RS +     +   +   +SE+ SN  GVN+ EE++ L+++E++Y  S +++   D++  T
Sbjct: 416 RSTASRAADEKSALATRLSENLSNEGGVNIDEEMTRLLQLERAYEASARIVSTVDRLFDT 475

Query: 475 LLEGVK 480
           LL  ++
Sbjct: 476 LLASIR 481


>gi|157160609|ref|YP_001457927.1| flagellar hook-associated protein FlgK [Escherichia coli HS]
 gi|170020522|ref|YP_001725476.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739]
 gi|312971219|ref|ZP_07785397.1| flagellar hook-associated protein FlgK [Escherichia coli 1827-70]
 gi|157066289|gb|ABV05544.1| flagellar hook-associated protein FlgK [Escherichia coli HS]
 gi|169755450|gb|ACA78149.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739]
 gi|310336421|gb|EFQ01607.1| flagellar hook-associated protein FlgK [Escherichia coli 1827-70]
          Length = 547

 Score =  182 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASVVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|315618252|gb|EFU98842.1| flagellar hook-associated protein FlgK [Escherichia coli 3431]
          Length = 547

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 152/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +   +  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKLIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|197120116|ref|YP_002140543.1| flagellar hook-associated protein FlgK [Geobacter bemidjiensis Bem]
 gi|197089476|gb|ACH40747.1| flagellar hook-associated protein FlgK [Geobacter bemidjiensis Bem]
          Length = 482

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/500 (14%), Positives = 170/500 (34%), Gaps = 38/500 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M +  +F+ A +              NI N +   Y R+  +                 V
Sbjct: 1   MGIGTLFDIASSGVTAQRLAIEVTGENIANVNTDGYSRQQVIMENKPVTTANGFPLGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +    NM        +S+  +    Q+     +    ++  ++     ++    +
Sbjct: 61  QIGAVQRTYDNMLQLQQVNGNSSYQENLAKQTALEQIQPSF-NELTSDGLGKALTNFFGA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + N S     + +I  ++ +V +F+     +  + + AD  +    +        L
Sbjct: 120 WQDLTTNASGSAERQALITRSQILVDSFHQMDFTLSNVASTADSNLVGITAEATDNARNL 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +VN  I    +   +A++ LDQRD+LL+K+S+ + I++ +  +    V    G  +  +
Sbjct: 180 ALVNTQILATGSVGGNANELLDQRDLLLRKLSQQVSITSTINADGTASVTLPGGGQIVNS 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----------PKGKIKALLQIRD 280
                 +         ++     +     ++   +              GK+   +Q+RD
Sbjct: 240 TRYATLYTNATGAPAANDIMLSALGNPPPANVPATDTLVATVGGGATVGGKLGGTMQVRD 299

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            +VP +  +L+EMA  L+   +         +   G    +                   
Sbjct: 300 GIVPGYLARLNEMANQLVTRTNTLHSAGYALDGTTGNNFFNPAGLTAGS----------- 348

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   +  +   ++       +   +G       +    N++  F        N + 
Sbjct: 349 -IALDGALTGTKVAAALPVVPTDPIPTSSGNNLNALQFVALGNQSVPF-----TTGNASF 402

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           +    + +  +  +   + ++  +       +S   S+   V+L EEL+ L K ++++  
Sbjct: 403 VNNYNSLVSQVGVDTEGTQNVASQGASFLKQLSALRSSNSEVSLDEELTNLTKYQRAFQG 462

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           S K+I     ML T+L  V+
Sbjct: 463 SAKVISAATDMLDTVLGMVR 482


>gi|320664481|gb|EFX31632.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. LSU-61]
          Length = 547

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAARTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|187732740|ref|YP_001880749.1| flagellar hook-associated protein FlgK [Shigella boydii CDC
           3083-94]
 gi|187429732|gb|ACD09006.1| flagellar hook-associated protein FlgK [Shigella boydii CDC
           3083-94]
          Length = 547

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRMTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|221640803|ref|YP_002527065.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           KD131]
 gi|332559781|ref|ZP_08414103.1| FlgK2 [Rhodobacter sphaeroides WS8N]
 gi|221161584|gb|ACM02564.1| Flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           KD131]
 gi|332277493|gb|EGJ22808.1| FlgK2 [Rhodobacter sphaeroides WS8N]
          Length = 481

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 168/490 (34%), Gaps = 21/490 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MS+    + A +  N  S+   +   N+ NA  + + RR+   T        + V  V  
Sbjct: 1   MSITGALSNALSGLNVTSRSIENSSNNVANALTEGFARRELEVTARSYGGGGQGVRTVGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           +A G +    +F       + D     S    IS    SL + +
Sbjct: 61  DRMVNMALVADRRLADAATGDRDTRAAFYQALADATGDTG-GGSLLARISAFSASLVTAA 119

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                    + V+D A+ +      ++  V + R  AD  I  +I  L   L+ +  +N 
Sbjct: 120 SRPESQARLQDVLDKAQSLAAGLRAASDAVLEARRAADASIADQIKTLTATLARVQQMNA 179

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  D+    D+R  L+  IS I+ +  + R N  + ++T+ G  L +    DI
Sbjct: 180 TITEMRVNGRDSSAVEDERQRLVDGISTIVPVREVTRQNGQIALFTAGGAALLDGRVADI 239

Query: 236 NFEKMN-----SYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            FE        S     +   + ++G+ +  +  G  +  G + A   +RD + P  Q +
Sbjct: 240 AFEPEPGLVAASSVAAGDLGLLTVNGLPLDLAGDGGMMGTGSLSAAFAVRDDLAPAEQAR 299

Query: 290 LDEMARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           LD +A+ LIG  +  D         +     A         L   +S     +P      
Sbjct: 300 LDALAQDLIGRMAAADASLGAGDAGLFTDDGAAFDPAAPAGLASRLSVNALADPDRGGAL 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             LRDG     +       L                        G++   +    A  ++
Sbjct: 360 WHLRDGLQRPSEGDSGDPTLLNALAAA-------LDARTPHAANGLSGTFSFSGLAAETV 412

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                    +      +    + +        GV+   E+  L+ +E++Y  + K++   
Sbjct: 413 SGAAVALVSAEAEASFASARRDELQALILAD-GVDTDREMEQLLLLERAYAANAKVVTAC 471

Query: 469 DKMLQTLLEG 478
           D +LQ LLE 
Sbjct: 472 DDLLQYLLEM 481


>gi|332669180|ref|YP_004452188.1| flagellar hook-associated protein FlgK [Cellulomonas fimi ATCC 484]
 gi|332338218|gb|AEE44801.1| flagellar hook-associated protein FlgK [Cellulomonas fimi ATCC 484]
          Length = 480

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/492 (11%), Positives = 131/492 (26%), Gaps = 34/492 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS  +    A +      Q      +N+ NA+   Y R+    +                
Sbjct: 1   MSTFSGLGTALSSLIAQRQALDVAGQNVANANTVGYTRQRASMSALPAAQVPSMFSVNHG 60

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           + E V V           D  L   +             A  E     +         ++
Sbjct: 61  AGEGVRVTGIERLGDVFLDMRLRTQTGGASYLAARADAYATLEKSLG-EPGETGLASQLA 119

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
            +  +    S    +D     V+  +  V     T     +     A       +  +  
Sbjct: 120 TMWGAWADLSNTPDKDSARAVVMQESTAVADRIATLYTAARTQWTQALSTTTALVDKVNT 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             + +  +N  I   T S   A++  DQRD+L+  ++ ++G S + R N  + V      
Sbjct: 180 TAAGVADLNARILEITNSGGTANELADQRDLLVMDLASLVGASAVTRENGQVDVLVGGNA 239

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            +       +  +   S+   +         V V   +      G     +    SV+  
Sbjct: 240 LVSGKRAHALEVQGARSFAQATGDTATPGQPVTVVWAERPTQSAGLDGGRVAGLLSVLAP 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                     V   +  +       ++       A                 +       
Sbjct: 300 AGPGGTGGPLVEAAARYDALAQTIATKVNAFHSTA-----------------VTTTGAAG 342

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            +   +      +      V + +           + + +      A          +  
Sbjct: 343 GDFWAVDGPEPPALALRIAVADRSAIAVAAAG-AGALDGSVGDQIAALKTDETGPDAHWS 401

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
            ++  L    + +      ++       +       V+  EE   ++  +++Y  + +++
Sbjct: 402 ATVVDLGVRAASASARSKVAESARVTAQQQQLAATSVDTDEETVNMLAFQRAYEGAARVL 461

Query: 466 MFTDKMLQTLLE 477
              D+ML TL+ 
Sbjct: 462 TAVDEMLDTLIN 473


>gi|331652135|ref|ZP_08353154.1| flagellar hook-associated protein FlgK [Escherichia coli M718]
 gi|331050413|gb|EGI22471.1| flagellar hook-associated protein FlgK [Escherichia coli M718]
          Length = 547

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 153/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIVAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLVLTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|15801199|ref|NP_287216.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           EDL933]
 gi|15830714|ref|NP_309487.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. Sakai]
 gi|168747142|ref|ZP_02772164.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4113]
 gi|168758625|ref|ZP_02783632.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4401]
 gi|168764494|ref|ZP_02789501.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4501]
 gi|168767741|ref|ZP_02792748.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4486]
 gi|168773927|ref|ZP_02798934.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4196]
 gi|168783612|ref|ZP_02808619.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4076]
 gi|168790017|ref|ZP_02815024.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC869]
 gi|168802027|ref|ZP_02827034.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC508]
 gi|195935472|ref|ZP_03080854.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4024]
 gi|208808965|ref|ZP_03251302.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4206]
 gi|208815841|ref|ZP_03257020.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4045]
 gi|208822064|ref|ZP_03262383.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4042]
 gi|209396607|ref|YP_002269928.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4115]
 gi|217328179|ref|ZP_03444261.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. TW14588]
 gi|254792464|ref|YP_003077301.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. TW14359]
 gi|261227013|ref|ZP_05941294.1| flagellar hook-filament junction protein 1 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256247|ref|ZP_05948780.1| flagellar hook-filament junction protein 1 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12514623|gb|AAG55828.1|AE005318_5 flagellar biosynthesis, hook-filament junction protein 1
           [Escherichia coli O157:H7 str. EDL933]
 gi|13360924|dbj|BAB34883.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770507|gb|EDU34351.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4196]
 gi|188018095|gb|EDU56217.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4113]
 gi|188999081|gb|EDU68067.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4076]
 gi|189354572|gb|EDU72991.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4401]
 gi|189363324|gb|EDU81743.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4486]
 gi|189365527|gb|EDU83943.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4501]
 gi|189370488|gb|EDU88904.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC869]
 gi|189375922|gb|EDU94338.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC508]
 gi|208728766|gb|EDZ78367.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4206]
 gi|208732489|gb|EDZ81177.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4045]
 gi|208737549|gb|EDZ85232.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4042]
 gi|209158007|gb|ACI35440.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC4115]
 gi|209773318|gb|ACI84971.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli]
 gi|209773320|gb|ACI84972.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli]
 gi|209773322|gb|ACI84973.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli]
 gi|209773326|gb|ACI84975.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli]
 gi|217318606|gb|EEC27032.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. TW14588]
 gi|254591864|gb|ACT71225.1| flagellar hook-filament junction protein 1 [Escherichia coli
           O157:H7 str. TW14359]
 gi|320189765|gb|EFW64421.1| Flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. EC1212]
 gi|320637533|gb|EFX07333.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. G5101]
 gi|320643094|gb|EFX12295.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H-
           str. 493-89]
 gi|320648552|gb|EFX17207.1| flagellar hook-associated protein FlgK [Escherichia coli O157:H-
           str. H 2687]
 gi|320653866|gb|EFX21940.1| flagellar hook-associated protein FlgK [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|326339304|gb|EGD63118.1| Flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. 1125]
 gi|326344735|gb|EGD68483.1| Flagellar hook-associated protein FlgK [Escherichia coli O157:H7
           str. 1044]
          Length = 547

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|292489127|ref|YP_003532014.1| flagellar hook-filament junction protein 1 [Erwinia amylovora
           CFBP1430]
 gi|292900246|ref|YP_003539615.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946]
 gi|291200094|emb|CBJ47220.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946]
 gi|291554561|emb|CBA22169.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora
           CFBP1430]
 gi|312173285|emb|CBX81540.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 545

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/546 (15%), Positives = 169/546 (30%), Gaps = 73/546 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            +FN A++  +++    + I  NI NA N +Y RRD +   S             V V  
Sbjct: 2   NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +       +  +   S           +E L E+ +   +   +P+  ++K  D+L+  
Sbjct: 62  VQRGYDAFINNEMR--SGITACAGHKARYEQLAEIDNMLGNDETNPSVSLNKFFDALKEM 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            K+ S     ++       +   FN+S+  +  +    + +I+  + ++     +L  +N
Sbjct: 120 EKDPSAPAARQSAFSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLN 179

Query: 175 DAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVP 232
           + I K  +       D LD RD LL+ +S   GI          M V  +DG  L     
Sbjct: 180 ENIEKIVSQHGTPPADMLDARDGLLEDLSMQTGIKVSEDKLTGRMDVMLADGRPLVSGSR 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 + ++                 +      +  G +  L   R+  +   +N+L++
Sbjct: 240 VYQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQ 299

Query: 293 MARVLI-------------------------------------------------GSFSE 303
           MA  +                                                     + 
Sbjct: 300 MALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGTASIDVKLTAPYTDINA 359

Query: 304 KDPIAGNSENV-----PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
           +D     +            +     +   +L                +   L     V+
Sbjct: 360 EDYTITFTNGDWEVKGADGRVVPHTVNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVA 419

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEK 413
           +     + N        +   +  + N     + GI         TL E   + +  L  
Sbjct: 420 ENVSVAIANGEAIAASDSSDPEEVSNNKNLALLLGIQDEKLIGKATLTESYASLVSGLGS 479

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S     +  S  V   ++  + + VGVNL++E   L   E+ Y  + +++     ML 
Sbjct: 480 TTSALKADYSTSGSVLKELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLD 539

Query: 474 TLLEGV 479
           TLL   
Sbjct: 540 TLLAIK 545


>gi|156934434|ref|YP_001438350.1| flagellar hook-associated protein FlgK [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532688|gb|ABU77514.1| hypothetical protein ESA_02265 [Cronobacter sakazakii ATCC BAA-894]
          Length = 552

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/554 (13%), Positives = 163/554 (29%), Gaps = 79/554 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS  ++ N A +  + A    +++  NI N +   Y R+ T+   S             V
Sbjct: 1   MS-SSLINSAMSGLSAAQTALSTVSNNISNYNVAGYTRQTTVLGQSNSTMTQGGWVGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   + E        L+A  +            +  + M       N+ +  +     S
Sbjct: 60  YVSGIQREYDAFITNQLNAAQNQSSGLTTRYEQMSKIDDM--VSGTTNNISTTMQDFFKS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N  +    +T++  A+ +V  F    + ++      +  +   +  +  + +++
Sbjct: 118 LQTLASNAEDPAARQTLLGKADGLVNQFKVVDQYLRDQDKQVNTAVTASVQQINNYATQI 177

Query: 171 TVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N+ I   T   +    +D LDQRD L+ ++++I+G+   V++ N   V  ++G  L 
Sbjct: 178 ASLNEQITRLTGMGAGASPNDLLDQRDQLVSELNKIVGVDVSVQDGNTFNVTMANGYNLV 237

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +           +S   +  +                 V  G +  L   R   +   +N
Sbjct: 238 QGSKASQVAAVPSSADPSRTTIAFVDKTAGNIEIPEKLVTSGSLGGLFAFRSEDLDQARN 297

Query: 289 QLDEMARVLIGSFSEKD--------------------------------------PIAGN 310
            L ++A     +F+++                                         +  
Sbjct: 298 NLGQIALAFGDAFNKQHEAGFDANGDVGKAFFKLGSPAAMSNARNTGSASLTASITDSTA 357

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK---- 366
            +        DG      +L   ++           N + L   G               
Sbjct: 358 VKASNYQMAYDGTNWKVTRLSDNVTVNATPTTDGAGNVTALEFDGLKIGITGAAANKDTF 417

Query: 367 ----------------------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                                  +A           +            +  + T  +  
Sbjct: 418 IVKPVNDVIISMDVNVHDESEIAMASDATSGESDNRNGKALLDLQNSKVVGGSKTFNDAY 477

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              I  +    +           V   ++    +  GVNL EE   L + +Q Y  + ++
Sbjct: 478 AAFISEVGNKTNTLKSSSTTQTNVVTQLTNQQQSISGVNLDEEYGNLQRYQQYYMANAQV 537

Query: 465 IMFTDKMLQTLLEG 478
           +     +   LL+ 
Sbjct: 538 LQTASALFDALLQI 551


>gi|323190594|gb|EFZ75866.1| flagellar hook-associated protein FlgK [Escherichia coli RN587/1]
          Length = 547

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|293414375|ref|ZP_06657024.1| flagellar hook-associated protein FlgK [Escherichia coli B185]
 gi|291434433|gb|EFF07406.1| flagellar hook-associated protein FlgK [Escherichia coli B185]
          Length = 547

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|194432475|ref|ZP_03064762.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1012]
 gi|194419362|gb|EDX35444.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1012]
 gi|332092937|gb|EGI98005.1| flagellar hook-associated protein FlgK [Shigella dysenteriae
           155-74]
          Length = 547

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 152/548 (27%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAKDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                            I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +           F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGPELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 TIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|188492078|ref|ZP_02999348.1| flagellar hook-associated protein FlgK [Escherichia coli 53638]
 gi|188487277|gb|EDU62380.1| flagellar hook-associated protein FlgK [Escherichia coli 53638]
          Length = 547

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASVVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|254182888|ref|ZP_04889481.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1655]
 gi|184213422|gb|EDU10465.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1655]
          Length = 452

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATAGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +           K   +LE+ S +  +
Sbjct: 62  TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    +    + +          +A   G++  L +  + V+      L  +A      
Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    LI     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALIEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|167567756|ref|ZP_02360672.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis
           EO147]
          Length = 452

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/476 (13%), Positives = 153/476 (32%), Gaps = 32/476 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMF 63
            +     +    A+    +   N  N     Y RR  + +      V        N++  
Sbjct: 2   NLIYIGMSGLRAANWSLRATADNTSNLATSGYSRRGVLLSSGANGGVDTSATLRFNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSA---DDHYNNSPTHYISKLRDSLESYSKNLSE 120
            + L   +  +G+ +  QS+    E +++    +  + +    +     SL + S +   
Sbjct: 62  TQQLWTTNGKLGRHKASQSYLDQLERLTSISLPEGKSKTNDLGMGAFFASLNAASTDPGS 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L + V+D    + + FN     + +   + ++     +  +    + +  +N  I   
Sbjct: 122 SVLRQAVLDATGSMTKQFNNMRSTLNEQLRNIEQARVTTVEEINGRAAAIAELNAKIMSG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            A+  D    LDQRDV +  +S + G+  + + N  + V    G  L           + 
Sbjct: 182 QAAGADVSGLLDQRDVAVDALSGLAGVRVVQQPNGTVDVSLGTGQPLVLGNQAATMAVEH 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    S    + +     +    +A   G ++ L  + D V+      L  +   L   
Sbjct: 242 DA----SGRQTLSLTFGDQTMPVRTASVGGALRGLSDVEDDVLRPQMEALRSLGSQLADL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            + +     +    PG  +                 T   +         L+        
Sbjct: 298 VNTQLGKGYDMNGQPGKPL----------------ITYDPSTGMLGIDKTLKPDDLAFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + A    LI       +   +          V+L       +  +     ++  
Sbjct: 342 DPDNPGDNANLRALIELGHSKIDVPGL--------GTVSLENATAVMMAKIGSASRENKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           L   +          + +  GV+  EE   +++ ++ Y+ + K+I   +++ +T L
Sbjct: 394 LLETADATRAQAERDWQSVSGVDKDEEAMNILRFKEMYSANMKVISVANELFETTL 449


>gi|254299680|ref|ZP_04967129.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           406e]
 gi|157809590|gb|EDO86760.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           406e]
          Length = 452

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATAGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +           K   +LE+ S +  +
Sbjct: 62  TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    +    + +          +A   G++  L +  + V+      L  +A      
Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    L+     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|320196436|gb|EFW71059.1| Flagellar hook-associated protein FlgK [Escherichia coli WV_060327]
          Length = 547

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     +L+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSLDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|222032835|emb|CAP75574.1| flagellar hook-associated protein 1 [Escherichia coli LF82]
 gi|312945644|gb|ADR26471.1| flagellar hook-associated protein FlgK [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 547

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     ++   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|110641258|ref|YP_668988.1| flagellar hook-associated protein FlgK [Escherichia coli 536]
 gi|191172473|ref|ZP_03034014.1| flagellar hook-associated protein FlgK [Escherichia coli F11]
 gi|300982573|ref|ZP_07176195.1| flagellar hook-associated protein FlgK [Escherichia coli MS 200-1]
 gi|110342850|gb|ABG69087.1| flagellar hook-associated protein 1 [Escherichia coli 536]
 gi|190907357|gb|EDV66955.1| flagellar hook-associated protein FlgK [Escherichia coli F11]
 gi|300307154|gb|EFJ61674.1| flagellar hook-associated protein FlgK [Escherichia coli MS 200-1]
 gi|324013281|gb|EGB82500.1| flagellar hook-associated protein FlgK [Escherichia coli MS 60-1]
          Length = 547

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     ++   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNNKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|117928040|ref|YP_872591.1| flagellar hook-associated protein FlgK [Acidothermus cellulolyticus
           11B]
 gi|117648503|gb|ABK52605.1| flagellar hook-associated protein FlgK [Acidothermus cellulolyticus
           11B]
          Length = 463

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/489 (14%), Positives = 162/489 (33%), Gaps = 49/489 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------------- 48
               + A        +      +NI NA    Y R+  +                     
Sbjct: 5   FGSLSTALTALQAERKALEVTGQNIANASTSGYTRQRAVFQGIGGSVVPAMYSRSDGVGA 64

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +       ++  +  +  +   +  Q   A  E     +         ++   
Sbjct: 65  GVVVSEVQRLQNAFLEQRANTENGTLAFLQGSQQTLADIENSFG-EPSTTGIQSLLTTFW 123

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +  +  + N ++      +I +A+ +    N +A  +    A + + ++  +  +     
Sbjct: 124 NGWDDVANNPADTAARTALIGDAQALASGLNVAAGALSAQWASSRQSLQSVVDQVNAAAQ 183

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  +N AI   T++ +  +D  DQRDVL++K++ ++G++T  + +    V     + + 
Sbjct: 184 DIAALNKAIVAATSAGNQPNDLEDQRDVLIRKLASLVGVTTKPKTDGSTDVLLGGSSLVS 243

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            ++ R +      +    S +    +      +   +AV  G+  ALL   +  +P +  
Sbjct: 244 GSLARQLQLGGGTAIDQVSTTP---VTLTWTDTGTTAAVSSGQGAALLTALNVTIPSYAG 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QLD +A  L+ + + +  +  +     G    D        +   I++   V        
Sbjct: 301 QLDSVANQLVTTVNTQHQLGYDLNGNAGGNFFDPTGTTAATIKVAITDPALVAASSVPPS 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +        + + L N+                                       R  I
Sbjct: 361 AGQPSLDGGNAQALANMSGTGADA------------------------------AYRKMI 390

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             L    +         Q V N +  S  +  GV+L EE + LI  + +Y+ + K +   
Sbjct: 391 VALGSESNTIQQRTTTQQSVVNQVEASRDSASGVDLDEEQTNLITFQHAYDAAAKYLSVI 450

Query: 469 DKMLQTLLE 477
           D +L TL+ 
Sbjct: 451 DSILDTLIN 459


>gi|331657144|ref|ZP_08358106.1| flagellar hook-associated protein FlgK [Escherichia coli TA206]
 gi|324007922|gb|EGB77141.1| flagellar hook-associated protein FlgK [Escherichia coli MS 57-2]
 gi|331055392|gb|EGI27401.1| flagellar hook-associated protein FlgK [Escherichia coli TA206]
          Length = 547

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|323967023|gb|EGB62449.1| flagellar hook protein FlgK [Escherichia coli M863]
 gi|327253481|gb|EGE65119.1| flagellar hook-associated protein FlgK [Escherichia coli STEC_7v]
          Length = 547

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNLEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|190890383|ref|YP_001976925.1| flagellar hook-associated protein [Rhizobium etli CIAT 652]
 gi|190695662|gb|ACE89747.1| flagellar hook-associated protein [Rhizobium etli CIAT 652]
          Length = 495

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 164/493 (33%), Positives = 260/493 (52%), Gaps = 15/493 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGSQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +     SS    Q+ L S     + +   + Y  SP+ Y+   +  L+++  +   
Sbjct: 61  DALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTSPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA ADK+I   +  L   LS+    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRAGADKQIATAVDTLNTLLSQFENANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+  L++IS+I+G+S   R+NNDMV+ T DGT LFET+PR + F+  
Sbjct: 181 TATGADPSSALDEREKTLKQISQIVGVSATTRDNNDMVLSTPDGTILFETIPRKVTFQAQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + Y  +   N +++DGV +    GS    +G +++LLQ+RD + P FQ QLDE+AR L+ 
Sbjct: 241 DVYNASITGNSVYVDGVALPRGSGSTTTAQGSLQSLLQVRDEIAPNFQKQLDEIARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----PQYRSNPSFLRDGG 355
            F E++     +        + G  D       G++ TI V+         +P  LRDGG
Sbjct: 301 LFKEQNTAGPPAYVPGLFTWSGGTVDTGGTAIAGMASTISVSSRVITSQGGDPMRLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----------GINTNVTLLEYAR 405
                 + N   L+GY   ++    +   +  FDP A          GI++NV+++EYA 
Sbjct: 361 VNVNGVVNNPTGLSGYTTDLDRLYTALGSDIDFDPAAGPAVGFDATTGIDSNVSIMEYAT 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           NS+GWLE+ RS++      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++
Sbjct: 421 NSLGWLEQYRSNATTAAENTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKIL 480

Query: 466 MFTDKMLQTLLEG 478
              D+ML++LL+ 
Sbjct: 481 NAVDEMLKSLLDI 493


>gi|153949847|ref|YP_001399640.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           IP 31758]
 gi|152961342|gb|ABS48803.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           IP 31758]
          Length = 453

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 151/481 (31%), Gaps = 43/481 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSE 58
            A +          +   NI N     Y R+    +           +   V V   R  
Sbjct: 6   TAFSGMQATQAHLNATSMNIANIHTPGYSRQRAEQSAIGADGQGGINAGNGVNVDAIRRL 65

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +K          +S        + +    E+M +++  + S    ++    SL + ++  
Sbjct: 66  SKQYVVMQEWQANSQQQYYEAGEQYLKAVELMVSNE--STSLATGLNNFFSSLSAATQMP 123

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               + + +I++A  +   FN     + + +    ++ ++ I  +      +   N  I 
Sbjct: 124 DSTPMRQQIIESANAMALRFNNVNNFIAQQKNSIGQQRDISIKEINSLTRSIADYNQQIL 183

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +  ++ +D LD++++ ++K+S +I        +    V    G  L           
Sbjct: 184 KNRSDGNNINDLLDKQELQIKKLSGLIETQVNQAEDGTYRVSVKQGQPLVNGAVAAELAV 243

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              S       +         ++   +    G++  +     + +   Q     MA+ + 
Sbjct: 244 DTRSADTKINIH------FSGTTQGMNMSCGGQLGGINDYEFTTLKKLQASTQGMAKTVA 297

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
             F+ +  +  +     G  +        N + Q                          
Sbjct: 298 DEFNTQLKLGSDFTGANGRDLFVFNPGDPNGMLQL------------------------- 332

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                    LAG  +      + F    I         +V L + A   +G++    + +
Sbjct: 333 SAITAEQLALAGRGEPSGDSSNLFKLIDIKQKNVVGMNSVRLDDAATTLVGYIAITSNRN 392

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     ++   N  +    +  GVN  EE   L++ +++Y  + K+I   DK+   LL  
Sbjct: 393 YSELENAENTLNQATRYRESISGVNNDEEAINLMEYQRAYQSNMKVIATGDKLFSDLLAL 452

Query: 479 V 479
           +
Sbjct: 453 I 453


>gi|126463724|ref|YP_001044838.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105388|gb|ABN78066.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 481

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 168/490 (34%), Gaps = 21/490 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MS+    + A +  N  S+   +   N+ NA  + + RR+   T        + V  V  
Sbjct: 1   MSITGALSNALSGLNVTSRSIENSSNNVANALTEGFARRELEVTARSYGGGGQGVRTVGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           +A G +    +F       + D     S    IS    SL + +
Sbjct: 61  DRMMNMALVADRRLADAATGDRDTRAAFYQALADATGDTG-GGSLLARISAFSASLVTAA 119

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                    + V+D A+ +      ++  V + R  AD  I  +I  L   L+ +  +N 
Sbjct: 120 SRPESQARLQDVLDRAQSLAAGLRAASDAVLEARRAADASIADQIKTLTATLARVQQMNA 179

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  D+    D+R  L+  IS I+ +  + R N  + ++T+ G  L +    DI
Sbjct: 180 TITEMRVNGRDSSAVEDERQRLVDGISTIVPVREVTRQNGQIALFTAGGAALLDGRVADI 239

Query: 236 NFEKMN-----SYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            FE        S     +   + ++G+ +  +  G  +  G + A   +RD + P  Q +
Sbjct: 240 AFEPEPGLVAASSVAAGDLGLLTVNGLPLDLAGDGGMMGTGSLSAAFAVRDDLAPAEQAR 299

Query: 290 LDEMARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           LD +A+ LIG  +  D         +     A         L   +S     +P      
Sbjct: 300 LDALAQDLIGRMAAADGSLGAGDAGLFTDDGAAFDPAAPAGLASRLSVNALADPDRGGAL 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             LRDG     +       L                        G++   +    A  ++
Sbjct: 360 WHLRDGLQRPSEGDSGDPTLLNALAAA-------LDARTPHAANGLSGTFSFSGLAAETV 412

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                    +      +    + +        GV+   E+  L+ +E++Y  + K++   
Sbjct: 413 SGAAVALVSAEAEASFASARRDELQALILAD-GVDTDREMEQLLLLERAYAANAKVVTAC 471

Query: 469 DKMLQTLLEG 478
           D +LQ LLE 
Sbjct: 472 DDLLQYLLEM 481


>gi|77464882|ref|YP_354386.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           2.4.1]
 gi|77389300|gb|ABA80485.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1]
          Length = 481

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 169/490 (34%), Gaps = 21/490 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MS+    + A +  N  S+   +   N+ NA  + + RR+   T        + V  V  
Sbjct: 1   MSITGALSNALSGLNVTSRSIENSSNNVANALTEGFARRELEVTARSYGGGGQGVRTVGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           +A G +    +F       + D     S    IS    SL + +
Sbjct: 61  DRMVNMALVADRRLADAATGDRDTRAAFYQALADATGDTG-GGSLLARISAFSASLVTAA 119

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                    + V+D A+ +      ++  V + R  AD  I  +I  L   L+ +  +N 
Sbjct: 120 SRPESQARLQDVLDKAQSLAAGLRAASDAVLEARRAADASIADQIKTLTATLARVQQMNA 179

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  D+    D+R  L+  IS I+ +  + R N  + ++T+ G  L +    DI
Sbjct: 180 TITEMRVNGRDSSAVEDERQRLVDGISTIVPVREVTRQNGQIALFTAGGAALLDGRVADI 239

Query: 236 NFEKMN-----SYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            FE        S     +   + ++G+ +  +  G  +  G + A   +RD + P  Q +
Sbjct: 240 AFEPEPGLVAASSVAAGDLGLLKVNGLPLDLAGDGGMMGTGSLSAAFAVRDDLAPAEQAR 299

Query: 290 LDEMARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           LD +A+ LIG  +  D         +     A         L   +S     +P      
Sbjct: 300 LDALAQDLIGRMAAADASLGAGDAGIFTDDSAAFDPAAPAGLAGRLSVNALADPDRGGAL 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             LRDG     +       L            +           G++   +    A  ++
Sbjct: 360 WHLRDGLQRPSEGDSGDPTLLNALAAALDARTAH-------AANGLSGTFSFSGLAAETV 412

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                    +      +    + +        GV+   E+  L+ +E++Y  + K++   
Sbjct: 413 SGAAVALVSAEAEASFASARRDELQALILAD-GVDTDREMEQLLLLERAYAANAKVVTAC 471

Query: 469 DKMLQTLLEG 478
           D +LQ LLE 
Sbjct: 472 DDLLQYLLEM 481


>gi|84502375|ref|ZP_01000511.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597]
 gi|84389187|gb|EAQ01984.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597]
          Length = 470

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 171/480 (35%), Gaps = 13/480 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-ISPENVTVVTQRSEN 59
           MS+L     +++     SQ+   +  NI +A ++NY  R    T      V V+      
Sbjct: 1   MSILTAILASRSGLQANSQRAQLVSTNIAHAQDENYSHRSLEVTEALGGGVRVIGVARAM 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
               D +     S   +Q  + +   +      +     S  + +S  ++ L   S +  
Sbjct: 61  DTAMDALYRTEMSFAAKQDAMATTLGVYGAELGELDTETSIPNLLSAFQNDLGLLSNDPG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +  L + V  +A+ +     ++   +  +   A   I  +IS     L EL  +N  I  
Sbjct: 121 DASLQQEVYLSAKALTGAIRSANSALNTVETTAVNGIGNDISAANEALRELARINADIGK 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                       D+R   L K++ I+ I      +    V+ + G +L      +     
Sbjct: 181 TEQGTETYAALEDRRAAELDKLANIVQIQVSYDTDGRANVHAAGGQSLVVAGHVNEFSFD 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T+ S    +                +G +   + + + VVP  + +LDE+AR LI 
Sbjct: 241 RPTGTLYSGDQDVTPGVAGRRGA-----EQGSLSGYVTLLNDVVPQQRLELDEIARGLIQ 295

Query: 300 SFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            F + D   A     +           +   L   I+    ++P    + S LRD     
Sbjct: 296 GFEDADTSLAPGQAGLFTNGGMALGSPVTPGLAGRIAVNDAIDPFRGGDLSLLRD----- 350

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                     A     +  + D F+    FDP AG     T++++   +I   +  R D+
Sbjct: 351 -GIGAVTTGAASDNTQVLAFLDFFDTQVAFDPAAGQGATGTIMDFTTGAISQQQARRVDA 409

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                           +  N  GVN+  EL  L  +EQSYN +++ +    +M+ TLL  
Sbjct: 410 ESNLNSLIASSETYRAARLNARGVNIDTELQNLSLIEQSYNANSQALRVASEMIDTLLNM 469


>gi|134280799|ref|ZP_01767509.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           305]
 gi|125657224|gb|ABN48712.1| flagellar hook-associated protein [Burkholderia pseudomallei]
 gi|134247821|gb|EBA47905.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           305]
          Length = 452

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +           K   +LE+ S +  +
Sbjct: 62  TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    +    + +          +A   G++  L +  + V+      L  +A      
Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    L+     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|218689035|ref|YP_002397247.1| flagellar hook-associated protein FlgK [Escherichia coli ED1a]
 gi|218426599|emb|CAR07427.1| flagellar hook-filament junction protein 1 [Escherichia coli ED1a]
          Length = 547

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|215486291|ref|YP_002328722.1| flagellar hook-associated protein FlgK [Escherichia coli O127:H6
           str. E2348/69]
 gi|312968844|ref|ZP_07783051.1| flagellar hook-associated protein FlgK [Escherichia coli 2362-75]
 gi|215264363|emb|CAS08720.1| flagellar hook-filament junction protein 1 [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312286246|gb|EFR14159.1| flagellar hook-associated protein FlgK [Escherichia coli 2362-75]
          Length = 547

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   +  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSSAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     ++   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLI--------------------------------GSFSEKDPIAGNSENVPGLF 318
            ++A                                       +    I     +   + 
Sbjct: 299 GQLALAFAGAFNTQHKAGFDANGDAGKDFFAIGKPAVLQNTKNNGDVAIGATVTDASAVL 358

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------ 372
             D     DN   Q              + +       +   F         +       
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 373 ----------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                    +   +      +      +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|167725936|ref|ZP_02409172.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           DM98]
          Length = 452

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 150/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +           K   +LE+ S +  +
Sbjct: 62  TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    +    + +          +A   G++  L +  + V+      L  +A      
Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
             ++     +    PG  +                 T             ++        
Sbjct: 298 IDDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    L+     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|220934400|ref|YP_002513299.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995710|gb|ACL72312.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 637

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 143/446 (32%), Gaps = 33/446 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS   V     +      +       NI N+  + Y R+    +               V
Sbjct: 7   MS-SGVLGIGVSGLLAFQRALGVTGNNIANSATEGYSRQRIDLSTQIPQFAGNGYFGSGV 65

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V           +  L   +SA  Q  L   F    + + AD   ++     + +   +
Sbjct: 66  QVSGVNRIFDQFVETQLRNSTSASEQYALYYDFARRVDNLLADP--DSGLAPGLQQFFAA 123

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++  + + + +   + +I  AE +V  F+   + +++ R   + +I+  ++ +      +
Sbjct: 124 VQDVANDPTSNAARQVLISEAESLVDRFSFLNQRLEEQRNLVNGQIQTTVAEINSLAEAI 183

Query: 171 TVVNDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N+ I            +D LDQRD L+ ++SE++ ++TI +++  + V+  +G  L 
Sbjct: 184 ADLNEDIVSALGRGGGAPPNDLLDQRDRLVLQLSELVSVNTIEQDDGALNVFIGNGQNLV 243

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +                    G  V  +  S +  G++ ALL +R SV+ + QN
Sbjct: 244 LGNRPTVLVADGLGPDPAQMQVGYVSPGATV--DITSYMTGGRLGALLDLRTSVLDVAQN 301

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L   A  L  +F+++  +  +     G                  +           + 
Sbjct: 302 SLGRTAIGLAQAFNDQHVLGQDLNGQLGEAFFRVPAPEAIAGASNAATGDLQVEIQDYSA 361

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L D         W ++   G                     A       L+E      
Sbjct: 362 LTLSDYRLRFDGADWQLRREPG----------------GQLLGAVAPGGTLLIEGLSIDT 405

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434
             +    +    L   ++   N I  
Sbjct: 406 SGIAGAATGDTFLIRPTRGGANQIDT 431



 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/430 (8%), Positives = 101/430 (23%), Gaps = 6/430 (1%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           + +   +    L + ++       L  F    + +   +         +      ++   
Sbjct: 208 QRDRLVLQLSELVSVNTIEQDDGALNVFIGNGQNLVLGNRPTVLVADGLGPDPAQMQVGY 267

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +     +  T       +    +     +   +    +                  +N 
Sbjct: 268 VSP-GATVDITSYMTGGRLGALLDLRTSVLDVAQNSLGRTAIGLAQAFNDQHVLGQDLNG 326

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +                 +     +   I   + +  ++  + +      L       +
Sbjct: 327 QLGEAFFRVPAPEAIAGASNAATGDLQVEIQDYSALTLSDYRLRFDGADWQLRREPGGQL 386

Query: 236 NFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                   T+  E   I   G    ++     +   +  A         P        + 
Sbjct: 387 LGAVAPGGTLLIEGLSIDTSGIAGAATGDTFLIRPTRGGANQIDTVISDPRMVAAASPVR 446

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
               G  +    +               +    N             P   S  + +   
Sbjct: 447 ASPDGDNTGPAIVRSVIAVDRDALDLTPVTVTYNAGASQFEIGGDTYPLDPSGVTVINHN 506

Query: 355 G----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           G            +   +      +    ++     + D    +    TL       +  
Sbjct: 507 GWELTIEGVPDDGDAFQVGPNIGGVGDNRNALALAGLQDQRMMVGGTATLEGTYNTLVAE 566

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +      +         + +       +  GVNL EE + L++ +Q+Y  + ++I  T+ 
Sbjct: 567 VGTRTRQAEIAARAQVKLLDEARAQRESISGVNLDEEAANLLRYQQAYQAAAQVISVTNS 626

Query: 471 MLQTLLEGVK 480
           +  TL+  V+
Sbjct: 627 LFDTLINAVR 636


>gi|83944166|ref|ZP_00956622.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36]
 gi|83845033|gb|EAP82914.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36]
          Length = 472

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 91/483 (18%), Positives = 177/483 (36%), Gaps = 15/483 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRS 57
           MSL    N A    +    Q      N+ NA    YVRR+ +   +        +   R 
Sbjct: 1   MSLSGALNSATAGLHTTQGQSRIAADNVSNAMTPGYVRREAVLVTASGGQGGAVISEVRR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           E      ++    +S + Q + +Q                 SP    +  ++SL +    
Sbjct: 61  EVDATLQRMSRLENSRMTQYQSIQEGLTTYTAYLGQPGDGTSPADRFNDFQNSLTTLVNM 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            S +    +V   AE++V++   +A  +     D + EI  E+++L   L +L  +N + 
Sbjct: 121 PSSNGAQTSVALAAEDLVRSVKGAATTLSTTLNDVNMEIRYEVADLNTALYQLRDLNASG 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              T    +A  F ++ D +L +IS I+       +N  + +YT  G  L E        
Sbjct: 181 SGFTPGSLEAAQFDEKVDTILDQISGIVDTRIHRSSNGSISLYTVSGAALLEGRV----- 235

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            +  ++  +  +       +    +    +  G +  L +++   +P F  QLDE AR L
Sbjct: 236 VQDVTFNPSDGTLMAGNQDITPFKDGVRGIQHGSLAGLSELKRETIPQFSQQLDEYARGL 295

Query: 298 IGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           I +F + D   A     +               L   +     ++    +    +RD   
Sbjct: 296 IQTFEDADASLAPGEAGLFTDNGNAFDPANITGLASRLQINSKISSTGDAEVWRIRD--- 352

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                             IN +    +         GI   VTL +++   I      R+
Sbjct: 353 ---GLGATSPGAGSETVQINAFLAGLDTAMNAATGTGIPAEVTLRDFSAEMITSQAATRA 409

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + +    +      +  +  N+ GVN+ +E+  L+ +EQSY  +++++    +M+ TL+
Sbjct: 410 RAENDFNAAASAAEVVMSARRNSEGVNIDDEMQQLLLIEQSYAANSRVLTAVSEMIDTLI 469

Query: 477 EGV 479
             V
Sbjct: 470 AAV 472


>gi|167905095|ref|ZP_02492300.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           NCTC 13177]
          Length = 452

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +           K   +LE+ S +  +
Sbjct: 62  TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGRPLVVGAQAGKIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    +    + +          +A   G++  L +  + V+      L  +A      
Sbjct: 242 DA----AGQQTLSLTFGSQVMPLRAASLGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    L+     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|182680456|ref|YP_001834602.1| flagellar hook-associated protein FlgK [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636339|gb|ACB97113.1| flagellar hook-associated protein FlgK [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 493

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 125/492 (25%), Positives = 221/492 (44%), Gaps = 13/492 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-YVRRDT-MTTISPENVTVVTQRSE 58
           MSL +     Q+  +  S + +   RNI  A++   Y R+   + + +   V V++    
Sbjct: 1   MSLTSAMGVTQSALSAFSAETSVTSRNIAGANSTGLYSRKSIDVVSSNNSGVEVLSVTRA 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   L   ++   +Q  L S          D   + SP   +S L++SL++ + + 
Sbjct: 61  QNQALFGDLLGSTAVSAKQDALSSGLDALYQTIGDTTDSISPAALLSNLQNSLQTLAASP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S+ +  + V+  A+ +    N ++  VQ +R  AD  +   +S +   L +   +N  I 
Sbjct: 121 SDMVQAQDVVGKAQALTDGLNNASSTVQSVRQQADGNMASSVSTINSLLGQFQTLNTQIV 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
               S  D  D LD RD +LQ++S  +GI+T   ++N M ++T  G TLF+   R + F 
Sbjct: 181 SGGKSGADVTDLLDSRDNILQQLSHQVGITTTSNSDNSMSIFTDSGVTLFQDKARTVTFV 240

Query: 239 KMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +Y   +  N + +DGV ++  +    +  GK+  L  +RD+V   +Q QLD +A  L
Sbjct: 241 PTTTYVAGTIGNSVMVDGVPITGKSSPMPIQSGKLAGLADLRDNVTTTYQAQLDGIAGTL 300

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLD-------NKLCQGISETICVNPQYRSNPSF 350
           I +F+E D             +                 L  GI     V+P+   N + 
Sbjct: 301 INAFAESDQSGATPPAASQPGLFTYSGAPALPSSLNMTGLAAGIRVNSNVDPKQGGNLTL 360

Query: 351 LRDGGS---VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           LRDGG     S  + +N    A Y   +N    +F++   F   A ++T+ +L +++  S
Sbjct: 361 LRDGGISDPASTTYTYNTTGAASYVGRLNGMLAAFDQTQSFSNAANLSTSSSLTDFSTAS 420

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             WL   R  +       + V + ++ + SN  GV+L  E+S ++ +EQSY+ S KL+  
Sbjct: 421 AAWLNGQRQSASTASDYQKTVVSSVTSALSNATGVSLDTEMSKMLDLEQSYSASAKLMST 480

Query: 468 TDKMLQTLLEGV 479
            + M Q+LL  V
Sbjct: 481 INTMFQSLLTAV 492


>gi|227820876|ref|YP_002824846.1| flagellar hook-associated protein FlgK [Sinorhizobium fredii
           NGR234]
 gi|227339875|gb|ACP24093.1| predicted flagellar hook-associated protein FlgK [Sinorhizobium
           fredii NGR234]
          Length = 476

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 164/483 (33%), Positives = 257/483 (53%), Gaps = 10/483 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    AQ+  +  + Q A++ +N+ NA N +Y RR  M   + +   +V+      
Sbjct: 1   MSLSSAIAIAQSAFSTTASQTATVSKNVANASNADYSRRMAMLGTTADGAQIVSIYRAQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K      S    Q  L S   L +     + Y  +P+ Y+S  RDSL++++     
Sbjct: 61  EALLKQNLTSISQSSAQSSLLSGLELLKSALGGNDYETAPSTYLSAFRDSLQTFASTPGN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +  TV+ +A ++  + + +A  VQ +R D DK+I  E+ NL   L+     N+A+K  
Sbjct: 121 STIAATVVADASDLANSISKTATAVQDLRLDTDKQIAEEVDNLNALLASFETANNAVKQA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  DA   LD+RD LL+++SE++GIST+ R +ND V+YTSDGT LFET  R + F   
Sbjct: 181 TATGADATAALDERDKLLKQLSELVGISTVTRADNDTVIYTSDGTVLFETQARQVTFTAT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           +++  ++  N IFIDGV +S+  G+    +GK+ +LLQ+RD + P FQ+QLDEMAR L+ 
Sbjct: 241 SAFDASTTGNAIFIDGVSLSAGAGADTTAEGKLASLLQLRDDIAPTFQSQLDEMARGLVS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS- 358
            F E                 DG    D  +  GI+ T+ VN   ++NP  LRDGG    
Sbjct: 301 LFQEDGAPGL-------FTWEDGTLPADGTVEPGIAATLSVNAAAQTNPFLLRDGGFNGL 353

Query: 359 -KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                      +GY DL++ +  + + +  FD  AG+++  +++E+A +SIGW E+ RS 
Sbjct: 354 VSNPGGATDPNSGYTDLLDGFITAMDGDMDFDAAAGLDSTSSIMEFAASSIGWFEQIRSA 413

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +         +     E+  N  GV++ EELS L+ +EQSY  S KLI   D M+ +LLE
Sbjct: 414 ASTADDNKTALLARTEEALGNVTGVSIDEELSLLLDLEQSYKASAKLISTVDAMMASLLE 473

Query: 478 GVK 480
            V+
Sbjct: 474 AVR 476


>gi|83955134|ref|ZP_00963790.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83840463|gb|EAP79636.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1]
          Length = 472

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 177/483 (36%), Gaps = 15/483 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRS 57
           MSL    N A    +    Q      N+ NA    YVRR+ M   +        +   R 
Sbjct: 1   MSLSGALNSATAGLHTTQGQSRIAADNVSNAMTPGYVRREAMLVTASGGQGGAVISEVRR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           E      ++    +S + Q + +Q                 SP    +  ++SL +    
Sbjct: 61  EVDATLQRMSRLENSRMTQYQSIQEGLTTYTAYLGQPGDGTSPADRFNDFQNSLTTLVNM 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            S +    +V   AE++V++   +A  +     D + EI  E+++L   L +L  +N + 
Sbjct: 121 PSSNGAQTSVALAAEDLVRSVKGAATTLSTTLNDVNMEIRYEVADLNTALYQLRDLNASG 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              T    +A  F ++ D +L +IS I+       +N  + +YT  G  L E        
Sbjct: 181 SGFTPGSLEAAQFDEKVDTILDQISGIVDTRIHRSSNGSISLYTVSGAALLEGRV----- 235

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            +  ++  +  +       +    +    +  G +  L +++   +P F  QLDE AR L
Sbjct: 236 VQDVTFNPSDGTLMAGNQDITPFKDGVRGIQHGSLAGLSELKRETIPQFSQQLDEYARGL 295

Query: 298 IGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           I +F E D   A     +               L   +     ++    +    +RD   
Sbjct: 296 IQTFEEADASLAPGEAGLFTDNGIAFDPANITGLASRLQINSKISSTGDAEVWRIRD--- 352

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                             IN +    +         GI   VTL +++   I      R+
Sbjct: 353 ---GLGATSPGAGSETVQINAFLAGLDTAMNAATGTGIPAEVTLRDFSAEMITSQAATRA 409

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + +    +      +  +  N+ GVN+ +E+  L+ +EQSY  +++++    +M+ TL+
Sbjct: 410 RAENDFNAAASAAEVVMSARRNSEGVNIDDEMQQLLLIEQSYAANSRVLTAVSEMIDTLI 469

Query: 477 EGV 479
             V
Sbjct: 470 AAV 472


>gi|158422272|ref|YP_001523564.1| flagellar hook-associated protein FlgK [Azorhizobium caulinodans
           ORS 571]
 gi|158329161|dbj|BAF86646.1| FlgK protein [Azorhizobium caulinodans ORS 571]
          Length = 485

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 227/485 (46%), Gaps = 5/485 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL + F+ A+N   N + Q ++  +NIENA N +Y R++          T V       
Sbjct: 1   MSLTSAFSTARNSLLNTATQLSTSAKNIENASNTSYSRKNANLVSGDAGNTSVVVARAGD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 +   +S   +   L +     +    D   + S    +S  + +L SY+     
Sbjct: 61  AALFLKMLDATSNSSKYAALLTGLTTLQSTIGDTETDTSVAARLSTFQTALSSYANAPDN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D LG+  I  AE +    N+S R VQ +RA+AD  I   +S +   LS+  + NDA+   
Sbjct: 121 DTLGQAAITAAENLATALNSSTRTVQSVRAEADANIANSVSKVNDLLSQFKIANDAVIAG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D LD RD +L K+SE +G++T++  NNDM +YT  G TLF+  PR + F   
Sbjct: 181 TVKGDDISDALDARDAVLSKLSEEMGVTTVLGQNNDMKLYTDGGATLFDQSPRSVTFVPS 240

Query: 241 NSYTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++  T+  N +++DGV V+ ++    +  G I    ++RD     +Q+QLDE+AR LI 
Sbjct: 241 ATFDGTTVGNAVYVDGVAVTGASSVMPLKSGAIAGYAEMRDVTTVTYQDQLDEVARGLIS 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ----YRSNPSFLRDGG 355
           +F E D   G      GLF       +   L + ++ TI VN         + S LRDGG
Sbjct: 301 AFQETDQSGGGGAAKSGLFTNGIDTTVAGGLTRNLAATITVNTAAVVSKGGSVSTLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                + +N  N A +   +     +      F     + + V+L  +A +S+ WLE  R
Sbjct: 361 MNGAAYAYNTTNAASFGTRLAALQTAIKAQQTFSSTTQLTSGVSLQTFASSSVSWLEGLR 420

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + + +     + + +  S + SN  GVN  +E +  +++E+SY  S+K++     M   L
Sbjct: 421 TSTTNKSETQKTLLSQASTAVSNASGVNTDQEYATQLQLEKSYQASSKILSAVQSMYDAL 480

Query: 476 LEGVK 480
              ++
Sbjct: 481 FSAIR 485


>gi|197285504|ref|YP_002151376.1| flagellar hook-associated protein 1 [Proteus mirabilis HI4320]
 gi|194682991|emb|CAR43432.1| flagellar hook-associated protein 1 [Proteus mirabilis HI4320]
          Length = 547

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/548 (13%), Positives = 169/548 (30%), Gaps = 74/548 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS   + N A +  N A    ++I  NI N     Y R+ T+   +             V
Sbjct: 1   MS-NNLINTAMSGLNAAQAAMSTISNNIANQKVNWYNRQMTVFNENGGTMTSNGYIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     E        ++   +            +    + AD    N  +  I     S
Sbjct: 60  NVSRIHREYNEFLAGQMNRAVTKQSALNSYNKNISQINNLLAD--KGNDVSSAIDDFFTS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L + + N  ++    T++  AE +V  FN + + ++ +  D + ++     N+  +  ++
Sbjct: 118 LPNVTNNAEDNPARTTILGKAEAMVNMFNKADQSLRDLEKDINSQVTNTTKNINEYSKQI 177

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I      +  + +D LDQRD L+Q+++ ++ +    ++   + V  ++G  L  
Sbjct: 178 AKLNQEISRSQGFNGAEPNDLLDQRDRLIQELNTLVDVQVTQQDGGFVNVSFANGLPLVA 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S                V       +  G++    + R+ V+   +NQ
Sbjct: 238 GTRSYEVSAIPSSKNSERLVVGYSNGIDEVREVDAKRINGGELGGAYRSRNEVLDASRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+++A VL   F+++     +     G    +          +   +         +   
Sbjct: 298 LNQLALVLGDQFNKQHEQGFDLNGDKGDKFFNLGGAHTMPNGKNKGDATFDVKYTDTREV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------DLINHYCDSFNKNFIFDPV 391
              D     +   WNV    G                     +  +       + +   V
Sbjct: 358 KAADYTVKYEGGKWNVTVEPGNRKFTATPNATTGELEFEGMSIKVNGAAQEGDSIVVQSV 417

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSD---------------------------------- 417
             +   +++     + I       S                                   
Sbjct: 418 GNVIAGMSVAISDPSKIAAAGTKDSGPSDNENMKKLFELPDEKLIDGKATIAGGYGSLIS 477

Query: 418 --------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                   +   +     + + I     +  GVNL EE   + ++++ Y  + K+I   +
Sbjct: 478 MVGNKVNTAQVDYDAQNAITSSILTQQQSVSGVNLDEEYGEMYRIQEYYMANAKVIQTAN 537

Query: 470 KMLQTLLE 477
            M   +++
Sbjct: 538 TMFDAIMQ 545


>gi|256833255|ref|YP_003161982.1| flagellar hook-associated protein FlgK [Jonesia denitrificans DSM
           20603]
 gi|256686786|gb|ACV09679.1| flagellar hook-associated protein FlgK [Jonesia denitrificans DSM
           20603]
          Length = 463

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/497 (12%), Positives = 144/497 (28%), Gaps = 61/497 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS  +  + A +  N          +NI N +   Y R+    T                
Sbjct: 1   MSTFSGLSTALSSLNAQRAAMEITGQNIANVNTPGYTRQRADMTPVSAGQTASLFSQGAK 60

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V +           D  +   +S+              E  + ++  ++  +  ++
Sbjct: 61  IGNGVRITDISRLGDIFLDARVRTTTSSASYLTARAEVYERLES-TINEPSDDGISAQLN 119

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           KL  S +  S N       + V++NA++V Q   +    V         E+E  ++ +  
Sbjct: 120 KLWTSFQDLSNNPQTLATKQVVLENAKQVQQGIASGYSAVSTQWNQVRAEVEAHVTEVNT 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             + +  +N  I+    S  + ++ +DQR  LL  +S + G +   +++    VY     
Sbjct: 180 TATAVAELNGQIRQTLVSGGNPNELIDQRGQLLNSLSALTGSTVRFQDDGTADVYVGGNP 239

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA-----LLQIRD 280
            +     R +      + T  +++            N   +   G+I             
Sbjct: 240 LVQANASRTLTVAGATAITGATDAASAVKVVWDRPGNPAVSFDGGQIAGKLSALAPATDG 299

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    N  + +A  L    +         +   G + A                    
Sbjct: 300 GILTTAANHYNTIAESLADKVNALHNAPPLFDLGAGPYAATL------------------ 341

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                     + +   +    +          D ++    + +        A I T    
Sbjct: 342 -------SVAITNPADIQAGAVGAGDFDGSVADALSQLGIATDGPDALWQTAAIAT---- 390

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                            + D    +    +     +     V+  EE   L+  +++Y  
Sbjct: 391 -----------GVAAKATADSATVAYAAQSTAEGLHIAATSVDTDEETVNLLSYQRAYQA 439

Query: 461 SNKLIMFTDKMLQTLLE 477
           + +++   D+ML  L+ 
Sbjct: 440 AARVMTTVDEMLDQLIN 456


>gi|227355995|ref|ZP_03840387.1| flagellar hook-associated protein 1 [Proteus mirabilis ATCC 29906]
 gi|227163983|gb|EEI48885.1| flagellar hook-associated protein 1 [Proteus mirabilis ATCC 29906]
          Length = 547

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/548 (13%), Positives = 169/548 (30%), Gaps = 74/548 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS   + N A +  N A    ++I  NI N     Y R+ T+   +             V
Sbjct: 1   MS-NNLINTAMSGLNAAQAAMSTISNNIANQKVNWYNRQMTVFNENGGTMTSNGYIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     E        ++   +            +    + AD    N  +  I     S
Sbjct: 60  NVSRIHREYNEFLAGQMNRAVTKQSALNSYNKNISQINNLLAD--KGNDVSSAIDDFFTS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L + + N  ++    T++  AE +V  FN + + ++ +  D + ++     N+  +  ++
Sbjct: 118 LPNVTNNAEDNPARTTILGKAEAMVNMFNKADQSLRDLEKDINSQVTNTTKNINEYSKQI 177

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I      +  + +D LDQRD L+Q+++ ++ +    ++   + V  ++G  L  
Sbjct: 178 AKLNQEISRSQGFNGAEPNDLLDQRDRLIQELNTLVDVQVTQQDGGFVNVSFANGLPLVA 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++                V       +  G++    + R+ V+   +NQ
Sbjct: 238 GTRSYEVSAIPSNKNSERLVVGYSNGIDEVREVDAKRINGGELGGAYRSRNEVLDASRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+++A VL   F+++     +     G    +          +   +         +   
Sbjct: 298 LNQLALVLGDQFNKQHEQGFDLNGDKGDKFFNLGGAHTMPNGKNKGDATFDVKYTDTREV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------DLINHYCDSFNKNFIFDPV 391
              D     +   WNV    G                     +  +       + +   V
Sbjct: 358 KAADYTVKYEGGKWNVTVEPGNRKFTATPNATTGELEFEGMSIKVNGAAQEGDSIVVQSV 417

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSD---------------------------------- 417
             +   +++     + I       S                                   
Sbjct: 418 GNVIAGMSVAISDPSKIAAAGTKDSGPSDNENMKKLFELPDEKLIDGKATIAGGYGSLIS 477

Query: 418 --------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                   +   +     + + I     +  GVNL EE   + ++++ Y  + K+I   +
Sbjct: 478 MVGNKVNTAQVDYDAQNAITSSILTQQQSVSGVNLDEEYGEMYRIQEYYMANAKVIQTAN 537

Query: 470 KMLQTLLE 477
            M   +++
Sbjct: 538 TMFDAIMQ 545


>gi|238794003|ref|ZP_04637621.1| hypothetical protein yinte0001_21180 [Yersinia intermedia ATCC
           29909]
 gi|238726635|gb|EEQ18171.1| hypothetical protein yinte0001_21180 [Yersinia intermedia ATCC
           29909]
          Length = 555

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/556 (14%), Positives = 176/556 (31%), Gaps = 81/556 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  + A    +++  NI N     Y R++T+   +             V
Sbjct: 1   MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNTIFAQNGGTLSPAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     E  +     L   SS      L   ++ + ++ +   + +N+ +  +     +
Sbjct: 60  AVTGVNREYNSFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSSTMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D   KTV+  AE +V  F  + + ++ +    +++I   ++ +  +  ++
Sbjct: 118 LQNLVSNSGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKITESVTQINNYADQI 177

Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +ND I     +S  + +  LDQRD L+ ++++I+G++   ++ +   V  ++G  L +
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVSFANGLPLVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S   T  +         V     S +  G +   L+ R   +   +NQ
Sbjct: 238 GPDSYKVQAIPSSSDATRLTIGYKYGSGDVLEVDESRLTTGTLGGTLKFRSEALDSARNQ 297

Query: 290 LDEMARVLIGSFSEKD--------------------------------------PIAGNS 311
           L ++A V+  SF+ +                                             
Sbjct: 298 LGQLALVMADSFNTQHKAGFDTSGEPGTDFFSFAQPNVLKNARNQGDASLTVSYTDTSKV 357

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +        DG      +L                N + L   G             A  
Sbjct: 358 KASDYSVEFDGTDWQVTRLSDNTKVPANPVKDGSGNTTGLSFDGVAVSVDNGTTGAQARD 417

Query: 372 PDLINHYCDSFNKNFIFDPVAG-----------------------------INTNVTLLE 402
             ++           +    +                              ++   TL  
Sbjct: 418 KFIVKTVSSVAANLQVEITDSSKIAAAGTADGGASDNVNAQALLSLQTKKLVDGKATLSG 477

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                +  +    S +         +   ++    +  GVNL EE   L + +Q Y  + 
Sbjct: 478 AYAGLVSNVGNQTSTAKTNSTAQANIVKQLTAEQQSISGVNLDEEYGDLQRFQQYYLANA 537

Query: 463 KLIMFTDKMLQTLLEG 478
           ++I     +   LL  
Sbjct: 538 QVIQTASTLFNALLSL 553


>gi|149191159|ref|ZP_01869417.1| putative flagellar hook-associated protein [Vibrio shilonii AK1]
 gi|148834997|gb|EDL51976.1| putative flagellar hook-associated protein [Vibrio shilonii AK1]
          Length = 459

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/480 (12%), Positives = 142/480 (29%), Gaps = 39/480 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVTVVTQR 56
           N   +          +  +N  N +   Y R+      +              V V    
Sbjct: 5   NIGLSGVLANRVALNTTAQNTANVNTPGYSRQVVSLEATSSGNFVNGINLGAGVEVGDII 64

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +      L   + +    +      +  E +        S T  ++    +++  S 
Sbjct: 65  RIAEQSSINRLREATESAQYSQSYFDGLSNIENLLG--ADGLSLTQGLNGFFAAIDEASV 122

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                   + V+ NA+ + Q FN+ + ++ +  A   +     +S++   L  +  +N  
Sbjct: 123 TPESIAFRQQVLTNADALAQQFNSVSAQLSQQEAAQSERYGAIVSHVNSQLESIAALNQK 182

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           ++             D+ D  L ++S+++ +  I        + T +G  L         
Sbjct: 183 LQEDALLGKGVAGLQDEMDKQLNELSKLLDVQVIYTAGGVE-LSTPNGQPLVIGGFSASL 241

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               +S    S    I    +  + +       G++ AL  ++ S     +  L ++A+ 
Sbjct: 242 TRDFSSGDPYSTDLSITFQSMTTAVDDS---LGGELGALEALKLSQYEPIKATLADLAKG 298

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L    +       +     G  +       +       S        + S+ +       
Sbjct: 299 LADGVNNALNTGFDLNGAAGQSLFTYTAGSEAHSLAIDSAISAQELAFSSSATL------ 352

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                       +G  D++               V G     T        +G +     
Sbjct: 353 ------------SGNGDVLKDLSMLSQTPLTNGSVVGK----TPYSAYSGLLGDIGIFTR 396

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      +Q+       +  +   VN  EE + ++    +Y  + K+I   ++M QTLL
Sbjct: 397 QAESEATAAQISVEDAQVARDSVSAVNSDEEAANMLLYLNAYEANMKVISTANQMFQTLL 456


>gi|300722675|ref|YP_003711965.1| flagellar hook-filament junction protein 1 [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629182|emb|CBJ89778.1| flagellar biosynthesis; hook-filament junction protein 1
           [Xenorhabdus nematophila ATCC 19061]
          Length = 546

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/548 (13%), Positives = 175/548 (31%), Gaps = 73/548 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51
           MS  ++ N A +  N A      +  NI N+ + +Y R+ T+ T +   ++         
Sbjct: 1   MS-NSLMNTAMSGINAAQVAMGVVGNNIANSKSADYNRQTTVMTQNNGTMSPVGFVGNGV 59

Query: 52  -VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     E      +  +A  +     +           + AD   + S ++ I  L  S
Sbjct: 60  VVSGINREYSEFITQQHNAAQTKYAALKTYDQQITKINDLLAD--KDTSLSNSIEDLFKS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L +   N  +     TV+  AE ++  F  +   +++I    + +IE  +  + ++  E+
Sbjct: 118 LGTVESNAEDSAARTTVLGKAEGLISRFKETDEYLRQIDNSINSQIEQNVQEINKYAEEI 177

Query: 171 TVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +ND I+    + + +    LD+RD  + ++++++ ++ I ++     V    G TL  
Sbjct: 178 AKLNDEIRRMRGTGNGEPLALLDKRDEAVNRLNQLVEVNVIQQDGGAYNVSFGGGMTLVS 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S      +                 V +G +   LQ+R  VV   +N+
Sbjct: 238 GNKPYQLEAIPSSTDSARITLGYNNGTSGTREIDERFVSQGALGGALQVRREVVDKTRNE 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN-- 347
           L+++A V+   F++      +     G+   +  K                     ++  
Sbjct: 298 LNQLALVMADQFNQVQHSGFDLNGDKGVDFFNFTKPEIISNSNNKGSAGITVEYADTSKV 357

Query: 348 -----------------------------------PSFLRDGGSVSKKFLWNVKNLAGYP 372
                                                 L+     +K    +   L    
Sbjct: 358 KASDYTLKFDGRDWKVQRVSDKAMLPVKPTGDTLEFDGLKVKIDAAKAEANDTHTLKTVS 417

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVT---------------LLEYARNSIGWLEK---- 413
           +++     +   +         +   +               L++   +  G        
Sbjct: 418 NVVATLEVNLKDSSQLATAGAKDGGPSDNRNAKKFLELQDKRLIDGKSSFAGAYASLVSK 477

Query: 414 ---NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
              + +           + + +  +  +  GVN+ EE   L +++Q Y  + ++I     
Sbjct: 478 VGSDANKVKVGFEAQGHIVDKLHSTRQSISGVNMDEEYGELQRLQQYYLANARVIQTAST 537

Query: 471 MLQTLLEG 478
           +   +L  
Sbjct: 538 LFDAILGI 545


>gi|94500248|ref|ZP_01306781.1| Flagellar hook-associated protein [Oceanobacter sp. RED65]
 gi|94427547|gb|EAT12524.1| Flagellar hook-associated protein [Oceanobacter sp. RED65]
          Length = 991

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 137/443 (30%), Gaps = 18/443 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  +     +              NI N D + Y R+D                     V
Sbjct: 1   MAGILEIGISGLRVHQTALTVTGNNIANVDTEGYSRQDASIVSQNPQFQGGVWIGGGARV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R          L   +S       L +     + + AD          I  +  + +
Sbjct: 61  DDVRRIYDEFLVGQLQKDTSTFNYFDTLSTNAEQIDKLLADP--GTGIQPGIENMFGAFQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   + S     + V+  ++ +V  F +    ++      + ++    + L      ++ 
Sbjct: 119 AAIDDPSSLPARQVVLSESQGLVDRFASIDDRLRDSNNILNGQMGTLATQLNTLAESISE 178

Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N  I+F TAS   +  ++ LD+RD+ +++ISE++ ++   ++N+ + ++  +G  L   
Sbjct: 179 LNTQIQFATASAQGNYPNELLDKRDLAIKEISELVSVTVATQDNDSVNIFIGNGQPLVVG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +           +   N ++ +   V  N  + V  GK+  LL  R  V+    +Q+
Sbjct: 239 KDVNRVSVAPGQQDPSR--NALYFERDGVVQNITNEVEGGKLGGLLAYRREVLDPVISQI 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
              A  L  + +E+  +  + +   G    + + D      + I +     P  R     
Sbjct: 297 GRAAIALQFNMNEQHALGIDIDGQRGGLFFNDVNDPLLASSRVIGDADNEMPDDRDIKVN 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           + D   ++                         +               +  +  +    
Sbjct: 357 ITDPNELTDSDYKIEFVGPNDYTFRVTRVKDGEEMLTTALSTEFPETFNIDGF--DISFE 414

Query: 411 LEKNRSDSHDLHMKSQVVFNHIS 433
               ++        ++     + 
Sbjct: 415 AGSFKAGDQFYLTPTRNGAKDLD 437



 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 111/374 (29%), Gaps = 10/374 (2%)

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L +++ +    +  K  ++  E       T  +  +    +    I+      R   +  
Sbjct: 621 LTNFTDDPVGFLEQKLFLNGVELTDSLPPTQIKYDESYPDEVPNPIDANFLADRINANFD 680

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
                 +     SK        +   +  +      I      +  +   T  G    E 
Sbjct: 681 FQEQGIVARSDGSKLTIIALNGEDLSIEFQGDNGDSIDVGNGQDTYL---TPTGQAFSEP 737

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           + +   F+       T E +        +  N+        IK +    +  +  +  +L
Sbjct: 738 LSKYEGFDFTEGGPYTFEFDVPGQGTFNIELNEEYTTGPDLIKGIEDKINDTLFSYNGEL 797

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                       + + +  + + V G         +  +L +GI              + 
Sbjct: 798 QVDIDEKGNILFQ-NRLEISPKGVNGSAKLTMGGQVKVELDEGIEFRTQPPGSNLFEENP 856

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN------TNVTLLEYA 404
            +       +   +     G    ++   D+   N     + GI        ++T  E  
Sbjct: 857 EQKPTYFGYELSMDGVPKEGDAFYVDFNDDAVTDNRNGVLLGGIQKKEIIEGDMTFSESY 916

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
             ++  +    + +      S+V+  +  ++ S   GVNL EE   LI+ E  YN S ++
Sbjct: 917 GKTVEEVGSITARAQINTESSKVLLQNSEDNVSAVSGVNLDEEAGKLIQYELGYNASAQV 976

Query: 465 IMFTDKMLQTLLEG 478
           I     +  TL+  
Sbjct: 977 ISVARDLFSTLIGI 990


>gi|256376483|ref|YP_003100143.1| flagellar hook-associated protein FlgK [Actinosynnema mirum DSM
           43827]
 gi|255920786|gb|ACU36297.1| flagellar hook-associated protein FlgK [Actinosynnema mirum DSM
           43827]
          Length = 459

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/491 (14%), Positives = 151/491 (30%), Gaps = 53/491 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------ 49
           S  +    A      A +      +NI NA  + Y R+   T                  
Sbjct: 3   STFSGITSALGGMQAARRGLEVAGQNIANARTEGYSRQRVETAAVGGTANAAFYATPPAT 62

Query: 50  ---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V V           +       S        +   A  E +  D+  +N     ++ 
Sbjct: 63  AGSVEVTGITRMADAFLEARGRTEHSKQAYLDGREEILATTEGLF-DEPSDNGLQAQLTG 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           +  S    + N  +  +   ++ ++  V    N  A+ +     D    ++  +S +   
Sbjct: 122 MWKSWTDTADNPGDSAVRNQLVVSSGVVADRLNNLAQTLGGEYNDTRGRLDSTLSEINTG 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
              L  +N A+         A++ LDQRD L  ++ E+ G +T    +  + V     + 
Sbjct: 182 ARRLADLNTAVVQAKQHGLPANELLDQRDQLALRLVELTGGTTSTGADGSLDVQLGGVSL 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +  +  R +      + T  +            S+   + +  G   ALL+   +++P +
Sbjct: 242 VSGSTARSLTLTGSATLTGAAGDPATVRWSDDASA---APLTGGSGGALLEGLTTIMPDY 298

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             QLD++A  L    +++           G                              
Sbjct: 299 LAQLDQVASKLATGVNQQHKAGFTPTGAAGGDFF-------------------------- 332

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
             S              +    +          ++   + +     G + +       R 
Sbjct: 333 --SGTTAATIKVALTSGDQVATSSSATRALDGSNADAISALARSATGPDAS------YRQ 384

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           ++  +      +         +   +  +  ++ GVNL EEL+ ++  ++SY  + +++ 
Sbjct: 385 TVVKIGMAVQTAASRSATQASITAQVDAARQSSAGVNLDEELTSMLTYQRSYEAAARVMS 444

Query: 467 FTDKMLQTLLE 477
             D ML TL+ 
Sbjct: 445 AVDSMLDTLIN 455


>gi|126445158|ref|YP_001061252.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           668]
 gi|126224649|gb|ABN88154.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           668]
          Length = 452

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY---ISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +           K   +LE+ S +  +
Sbjct: 62  TQQLWQAAGQYGRYDAAQTYFDQLEALFGGNPVDGKTQANDLGFGKFIGALEAASGDPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGSVDVSMANGQPLVVGAQAGKIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    + S       + + +        G++  L +  + V+      L  +A      
Sbjct: 242 DAAGQQTLSLAFGSQVMPLRAAS----LGGELLGLAEFEEEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPLL----------------TYDAATGLLGVDPSVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    L+     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALVEIGSTSVDLPGI--------GDVSLGNAIATMMGKVGAASQQNRQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|283834449|ref|ZP_06354190.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC
           29220]
 gi|291069996|gb|EFE08105.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC
           29220]
          Length = 458

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 163/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+  +T+           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTDGYTRQVAITSTIGASSGSANSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYNTQQEYLTQLETVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  +  +    + +   +    ++   + +  ++ +    S +   N
Sbjct: 120 TTSPDDSALREQVISESGALALRVDNTLDYIDSQSSEIVSQEKAMVAQVNTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S I+ +   + +  +  V   +G  L       
Sbjct: 180 QQIAEAEANGDNASALYDARDQMVEQLSGIMDVQVNIDDEGNYNVTLQNGQPLVSGQESS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                       ++           +++  +    G + AL   ++ V+      ++ MA
Sbjct: 240 -----TIELDTNADGTQSMSLTFAGTTSSMNTDTGGSLGALFDYQNEVLTPLTGTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +    ++  +   +   +       + S+P      
Sbjct: 295 EQFADAVNTQLAQGYDLNGNPGEPLFIYDENSSDGPLEVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +    + +     +VT+ E   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLDIEGL----GSVTVGEACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I     +  +
Sbjct: 393 SQQNQTEAEAAANVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISTGADIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|253990121|ref|YP_003041477.1| flagellar hook-associated protein FlgK [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781571|emb|CAQ84734.1| flagellar hook-associated protein 1 flgK [Photorhabdus asymbiotica]
          Length = 547

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/550 (14%), Positives = 175/550 (31%), Gaps = 73/550 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +    A     ++  N+ N     Y R+ T+   +             V
Sbjct: 1   MS-NSLINTAMSGLQAAQIALGTLSNNVANMRVPGYNRQSTVINQNGGTMTSVGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV +   +     ++ L +  +  G         +  + + AD    N+ ++ I     S
Sbjct: 60  TVASINRQYNEFINQQLSSAQAKQGALTTYSQQISQIDNLLAD--KANNLSNTIDDFFTS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D    T I  A+ ++    ++   ++K+  + ++ I     ++  +  ++
Sbjct: 118 LQNVVSNAEDDAARTTTIGKAKGLMNQLKSADTFLRKMENNINRGIANSADDINNYAQQI 177

Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I           +  LDQRD L+ ++++++G+S   ++ +   V  + G TL +
Sbjct: 178 AKLNGEITRMRGGGSAEPNSLLDQRDQLVNELNKLVGVSVTQQDGDTYNVTFAGGLTLVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++   +  +         V       + KG++   L+ R  V+   +NQ
Sbjct: 238 GTTAYRVEAISSNADSSRITLGYDRGFGDVVEIDERHIDKGELSGTLRARSEVLDNSRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-----------------LDNKLCQ 332
           L+++A VL   F++      + +   G       K                    +    
Sbjct: 298 LNQLALVLGDQFNQVHRSGFDLKGRQGEDFFTINKPDIIANGKNKGSADFKVEYTDTSAV 357

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             S+                D   +S K   N     G    IN         +    V 
Sbjct: 358 KASDYHLSYDGANWKIQRAADKADISAKVTGNTLEFDGLKVEINPTDVKEYDRYTLKAVN 417

Query: 393 GINTNVTLLEYARNSIGWLEKNRSD----------------------------------- 417
           G+   + +     + +                                            
Sbjct: 418 GVIGGMEINIKDASQLAAAGTKDGGPSDNVNAKKLIELQSKKLVEGKASFSGAYASMVST 477

Query: 418 -------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                  ++      + + N +     +  GVN+ EE   L  ++Q Y  + ++I     
Sbjct: 478 IGNQTSTANVDLETQRNITNQLRVEQQSVSGVNIDEEYGALQSLQQYYLANAQVIQTATT 537

Query: 471 MLQTLLEGVK 480
           +   +L+  +
Sbjct: 538 LFNAILDLRR 547


>gi|37525847|ref|NP_929191.1| flagellar hook-associated protein FlgK [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785276|emb|CAE14217.1| Flagellar hook-associated protein 1 (HAP1) [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|37681983|gb|AAQ97871.1| FlgK [Photorhabdus luminescens]
          Length = 549

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/552 (13%), Positives = 170/552 (30%), Gaps = 75/552 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +    A     ++  N+ N+    Y R+ T+   +             V
Sbjct: 1   MS-SSLINIAMSGLQAAQIALGTVSNNLANSKVPGYNRQSTVVNQNGGTMTSVGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV +   +     ++ L    +  G+        +  + + AD    N+ ++ I     S
Sbjct: 60  TVTSINRQYNEFINQQLSEARAKQGEFTTYSQQISQIDNLLAD--KANNLSNTIDDFFTS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D    T I  ++ +V    ++   ++K+  + ++ I     ++  +  +L
Sbjct: 118 LQNVVSNAEDDAARTTAIGKSKGLVNQLQSADAFLRKMENNINRGIANSAESINNYAQQL 177

Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I           +  LDQRD L+ ++++++G+S I ++ +   V  + G TL +
Sbjct: 178 AKLNGEITRMRGGGSAEPNALLDQRDQLVNELNKLVGVSVIQQDGDSYNVSFAGGLTLVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ----GSAVPKGKIKALLQIRDS---- 281
                      ++   +  +         V              G ++A  ++ D+    
Sbjct: 238 GTTAYRVEAISSNADSSRITLGYDRGFGDVVEIDEKFIDKGQLGGTLRARSEVLDNSRNQ 297

Query: 282 ------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                 V+    NQ+      L G   E      N + +                   + 
Sbjct: 298 LNRLALVLGDQFNQVHRAGFDLKGKPGEDFFTFNNPDVIANSKNKGSANFKVEYTDTSVV 357

Query: 336 ETICVNPQYRSNPSFLRDGGS-------------------------------VSKKFLWN 364
           +    +  Y      ++                                     +  L  
Sbjct: 358 KDSDYHISYDGANWKIQHASGKVKVDIAAKVTGNTLEFDGLKVEIDPTNVKENDRYTLKT 417

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGIN----------------TNVTLLEYARNSI 408
           V  + G   +              D  A  N                 N +      + +
Sbjct: 418 VSGVIGNMAVNIKDASKLAAAGNKDGGASDNVNAKKLIELQNKKLVEGNASFSGAYASMV 477

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    S+++        +   +     +  GVN+ EE   L  ++Q Y  + ++I   
Sbjct: 478 STIGNQTSEANVDLETQNNITKQLYADQQSVSGVNVDEEYGALQNLQQYYLANAQVIQTV 537

Query: 469 DKMLQTLLEGVK 480
             +   +LE  +
Sbjct: 538 TTLFNAILELRR 549


>gi|222099583|ref|YP_002534151.1| Flagellar hook-associated protein 1 [Thermotoga neapolitana DSM
           4359]
 gi|221571973|gb|ACM22785.1| Flagellar hook-associated protein 1 [Thermotoga neapolitana DSM
           4359]
          Length = 860

 Score =  177 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/454 (12%), Positives = 131/454 (28%), Gaps = 37/454 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+  + N A             +  NI NA+   Y R+  +                  
Sbjct: 6   MSMFGILNTALTGIYTHKLAMNVVGHNIANANTPGYSRQRPVIEATPPIPLTTLTQPSIP 65

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   V T         D      ++       + S     E + + +   N     
Sbjct: 66  LQMGTGSRVRTIVRLRDAFLDIQYRQVNNRYNYWDTILSNLHFIEQLLS-EPGENGIRSL 124

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    ++ +    + +       V+  A+++V         ++++R D D EI   +S +
Sbjct: 125 VDNFWNAFQEVISDPTNTASKAEVVSRAQQMVSQMKDLYGRLEQLREDIDNEIVQRVSEI 184

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +  L  +N+ I+     K   +D LD+RD +L ++S+++ I+     +  + +   +
Sbjct: 185 NQMIKRLADLNNKIRIGMTLKSPPNDLLDERDRILDELSDLVNINYTEAEDGQITLRIGN 244

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L  +   ++   +          + +F+    +          GK+KALL +RDS +
Sbjct: 245 QIVLNGSTYNEV---RALERPYGRGYHELFVGNAKLIL------SDGKLKALLDLRDSTI 295

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  +LDE       + +        S  V          +  +               
Sbjct: 296 VKYMRKLDEFVLFTTDAINLIHRDGFESGGVTTNLDFFKKIESFSDDPAIFRIK------ 349

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
              N                                   +          +++  T+ + 
Sbjct: 350 --GNRKLEMGPYHTVTGIHSATSVSEITGKTFTSDDLILSFGGGTSSALAVSSGSTINDL 407

Query: 404 AR--NSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               N +G        +    +  +     +   
Sbjct: 408 ISSWNLLGTTLSTGQHAGGYRLYLEDTSGDLRNK 441



 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/433 (11%), Positives = 109/433 (25%), Gaps = 27/433 (6%)

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL----RDSLESYSKNLSEDILGKTVID 129
           +  +               D                       S S  + +  +  T+ D
Sbjct: 429 LYLEDTSGDLRNKIFFSLGDSLSKMGFETETRGFLTIKESDFSSLSPGIYKVSVEYTLKD 488

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
            +++        +  V      +     L +                I        D   
Sbjct: 489 GSKQSETIPIDLSSGVSLSNIASSINSSLHLRAQVYTDPATGENMLVIVPDEFLNFDPSA 548

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                D      +     +  V    D +     G T F+               +    
Sbjct: 549 VNVLSDDSFFTEANAFVRNYEVLKYRDTLENVFYGQTGFDPTRAFTITINSTDIEIDPVV 608

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF------QNQLDEMARVLIGSFSE 303
           + +      ++      +          +R + +  F                L     +
Sbjct: 609 DTLETLVEKINEKGTGVLADLTPHNSFVLRATSLYDFDLRMMEIKGPQGFFEALGLIDPD 668

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
            DP   +        ++        +    +S+ +  +      P  + +   VS     
Sbjct: 669 NDPTTFDWT-NSYTLVSKNDDFDTLRDRFRVSDILTFDRAPHDEPLNIVNQFEVSSSLAS 727

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------------INTNVTLLEYARNS 407
           N  NLA          D    +      A                  N   +  E+    
Sbjct: 728 NPNNLAVDIGYALENSDWNAVDIRPTGAANPKLLEMVQNLYTRKMLSNGKESFYEFFGGV 787

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  L      +  L   ++++   I        GV+L EE++ +I+ + +++ + K+I  
Sbjct: 788 VAELGVEAETASSLKTNTEILRQEIDNERERVKGVSLDEEMANMIEYQHAFSAAAKVIST 847

Query: 468 TDKMLQTLLEGVK 480
            D+M+QT++  V+
Sbjct: 848 VDEMIQTVINMVR 860


>gi|265993604|ref|ZP_06106161.1| FlgK [Brucella melitensis bv. 3 str. Ether]
 gi|262764474|gb|EEZ10506.1| FlgK [Brucella melitensis bv. 3 str. Ether]
          Length = 418

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 126/417 (30%), Positives = 205/417 (49%), Gaps = 5/417 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y  + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGRDRLSALYSADNYSGSPSGLIGDLRDALQTYVASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDCTRQVQSLRNDADREIADSVANINDLLAKFEKANQNVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL++ S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQRSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +    + +NV+  AG+ D +    ++F++  +FD  AGI+++ +L+ Y+ +S+GWLE
Sbjct: 361 ANGANYKYNVQGAAGFSDRLRALNEAFSEPMVFDAAAGISSSSSLIGYSASSLGWLE 417


>gi|170680262|ref|YP_001742379.1| lateral flagellar hook associated protein 1 [Escherichia coli
           SMS-3-5]
 gi|170517980|gb|ACB16158.1| lateral flagellar hook associated protein 1 [Escherichia coli
           SMS-3-5]
          Length = 458

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 LQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|114798876|ref|YP_758980.1| flagellar hook-associated protein FlgK [Hyphomonas neptunium ATCC
           15444]
 gi|114739050|gb|ABI77175.1| flagellar hook-associated protein FlgK [Hyphomonas neptunium ATCC
           15444]
          Length = 483

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 185/491 (37%), Gaps = 21/491 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----VTVVTQ 55
           MS+ A    A++     SQ+   +  N+ NA    YVRR  +            V     
Sbjct: 1   MSISAAILAARSGLQVTSQKAEIVATNVANASTPGYVRRSLVVGELVNGSQTAGVMANGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +         +S + Q  +L S          +           S    +L +  
Sbjct: 61  ARAGDDAIKAQRRELTSDVAQATVLASTWQTISQRVGNTSSGGGLFRSFSNFETALSAAV 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +      G  ++D A+ V +  N+ +    + RA+AD EI   +  +   L ++  +N 
Sbjct: 121 TSPESTANGSALLDAAKSVARELNSLSEYGAQARAEADSEIAQGVETVNTALKQVQDLNK 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-FETVPRD 234
            I     +   A   +D+R  +L  I+E + I T+ R+   + V T+ G  L   +  R 
Sbjct: 181 RIASIDRTSEQAATLMDERQRVLDTIAEFLPIQTVQRDAGTIDVLTTQGVYLINGSTARQ 240

Query: 235 INFEKMNSYT-----VTSESNPIFIDGVVVSSNQGSA--VPKGKIKALLQIRDSVVPIFQ 287
           I F   +++T        + + I +DG+ +++   S   V  G   AL  +RD  VP F 
Sbjct: 241 IEFTPSSAFTSGQTLANGDLSGISVDGIDLTTGSTSFGAVSGGLFGALFTLRDQDVPAFM 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +QLD +A  +I   S+       +    GLF+      L   L   IS    V+P    +
Sbjct: 301 DQLDMVANDIITRLSDDAIDPTKTPGEQGLFVDPDAAGLSG-LASRISVNAAVDPAQGGD 359

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              LRD                G    ++   D+F +    +   GI    +  + A   
Sbjct: 360 IWRLRD------GLGATASGPPGNSATLSAIYDAFTQVKSLNAN-GIQGAFSASDLAAQL 412

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              + + R     +   +Q     + E+  +  GV++  E+  L+ +EQ+Y  + ++I  
Sbjct: 413 SSVVGQKRVYQDSVLASTQAQHVTLVEAEQSLTGVDVDVEMESLLLIEQAYAANARVIQV 472

Query: 468 TDKMLQTLLEG 478
              M+  L+E 
Sbjct: 473 ARDMIGILMEL 483


>gi|325497610|gb|EGC95469.1| flagellar hook-associated protein FlgK [Escherichia fergusonii
           ECD227]
          Length = 548

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 60/549 (10%), Positives = 154/549 (28%), Gaps = 75/549 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + + + +   N+ +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTTRYEQMSKIDNLLSSET--NNVSTSLQGFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  A+ +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++++G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVNELNKVVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPI-------------------------------------- 252
                     +    +  +                                         
Sbjct: 239 SSARQLAAVPSHADPSRVTVAYVDATAGEIEIPEKLLTSGTLGGMLTFRSQDLDQSRNTL 298

Query: 253 ---------------FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                                  +        GK   L   +++     + ++   ++VL
Sbjct: 299 GQLALAFADAFNKQHQAGFDATGAKGEDFFAIGKPLVLSNTQNNSDAAIKAEVINGSQVL 358

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              ++     AG  +            + D                   + +        
Sbjct: 359 ATDYTITWQGAGKWQVTRLASNTSFTVEPDAAGNVEFDGLKLTFSGTPKDNNSFTLKPVS 418

Query: 358 SKKFLWNVKN--------LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +VK                 +   +      +      +    +  +     + 
Sbjct: 419 DAVVNMDVKVKDESQIALAQEAGAGDSDNRNGQKLLDLQSNGKTVGGAKSFNDAYATLVS 478

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   +
Sbjct: 479 DVGNKTATLKTSSTTQNNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 538

Query: 470 KMLQTLLEG 478
            +   L+  
Sbjct: 539 TLFDALINI 547


>gi|291288372|ref|YP_003505188.1| flagellar hook-associated protein FlgK [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885532|gb|ADD69232.1| flagellar hook-associated protein FlgK [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 584

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 78/579 (13%), Positives = 192/579 (33%), Gaps = 100/579 (17%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS L+ +F+   +    +         NI N + + Y R+  +   +             
Sbjct: 1   MSNLMHIFSTGVSGLFASQAGIDVTGNNISNVNTEGYSRQRVVLETANPEKNSQGVFGRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V+V T      +M    +   SS +     LQS  +   +   +    +     +    D
Sbjct: 61  VSVETVERIYDDMLASSIRNESSDLAYYETLQSALSKVTIYFNELEDGSGLGEAMQNYFD 120

Query: 110 SLESYSKNLSEDI-----LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +    +    ++         T++++A  +      S   +++I+ +++  +   ++ + 
Sbjct: 121 AWGDLANTAPDESDEALIKRATLVESASVLADKIQASYASLEEIKNESNLLVSDYVNEIN 180

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +  +N  I    +    A+DF DQR VLL +++EI  +S   R+N  + VY    
Sbjct: 181 NISENIAYLNKEIARIESGGDTANDFRDQRQVLLNRLAEISNMSVTERSNGQVAVYIGGN 240

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             + E    ++  E+ +  +                 +  +A   G+I   L +RD ++ 
Sbjct: 241 AIVDEATRFELKAEQADEDSDDVSIFWGTEGQSNKLVDITNAFTSGEIAGELYVRDELIQ 300

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------------- 331
            +Q+QLDE+A V+I   ++   +   +  +  +  ++G+ +                   
Sbjct: 301 GYQDQLDELANVMITETNKIHSLGQGTNRLTQISSSNGVTNPTYTFSEPAGAFPIEIQAG 360

Query: 332 -------------------------QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                      ++  I        NP+      S+S        
Sbjct: 361 TLRISIYDTEGNKVEDLDIVIDPAKDNLNSVIAKISAADGNPNGGMIQASMSSGNTIKFT 420

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL--LEYARNSIGWLEKNRSDSHDLHMK 424
           + +GY         +F            +   T+   +   ++  ++  +++ +   +  
Sbjct: 421 SGSGYDFTFAEDTSNFLVASGTYGFFAGSDASTIAVSDIIMSNNSYIATSQTGAAGDNQN 480

Query: 425 SQVVFNHISESYSNTVGVNLQE-------------------------------------- 446
           +  + +    +   ++ V + E                                      
Sbjct: 481 AAAIADLKDTNIMTSMDVTVDEFYAYFAASIGSDKATVDIYVTTKTQAMSELELKLEEVK 540

Query: 447 ------ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 E++ L+K ++++  S++ I   D+ML+ L+  +
Sbjct: 541 GVSMDEEMTNLMKFQRAFEASSRFITVVDEMLEKLVNSL 579


>gi|331671810|ref|ZP_08372606.1| flagellar hook-associated protein FlgK [Escherichia coli TA280]
 gi|331070799|gb|EGI42158.1| flagellar hook-associated protein FlgK [Escherichia coli TA280]
          Length = 458

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|182412215|ref|YP_001817281.1| flagellar hook-associated protein FlgK [Opitutus terrae PB90-1]
 gi|177839429|gb|ACB73681.1| flagellar hook-associated protein FlgK [Opitutus terrae PB90-1]
          Length = 484

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/497 (13%), Positives = 165/497 (33%), Gaps = 47/497 (9%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------N 49
           MS L A  N      +  S+   +  +N+ N +N +Y R+  +                 
Sbjct: 1   MSGLFASLNSTVGALSAHSRSIETAGKNLANVNNASYARQRVVYGDRGTIVTPDGAYSLG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-------------HY 96
           +  +  +     + D  +   +S        Q      +     D               
Sbjct: 61  LEALGVQQLRDMLIDNQVTRETSLTSYFAAQQKAYQRAQAALGQDISSVGSSVSASASTS 120

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +      +  L ++ + ++ N ++  + ++++  A  +      + + + +++AD   +I
Sbjct: 121 DAGIGAGLDDLFNAFQGFASNPTDTGIRQSLLQTASILTDRVQLADKRLAQVQADLHSQI 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           + ++    + L+ ++ +N+ I          A D  DQR   L+K++  + I     +  
Sbjct: 181 QTDVGEANKLLATISDLNNQIARFEVERPGSAVDLRDQRQAALEKLATKLTIDVQEISTG 240

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
            ++V +       +     +     +S T     +P        +      +  G I+  
Sbjct: 241 QVIVSSP------DANGAPVVLVDSDSITGPVSFDPATDTISAGTPTTVLGLTSGAIQGS 294

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
           L   +  V   ++QL  +A+ L  S +E                 DG  D        ++
Sbjct: 295 LSAHNEGVQPLRDQLTLIAQQLTASVNEIYNPG-GVAADDFFATLDGNGDPITAGTFQLA 353

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +     + ++                     AG   +         + F         
Sbjct: 354 SGLTAFSLHAND---------------GTAGAPAGDNSVALAIAQLATRRFSTTGAPPDL 398

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            + TL  +  +++  L +  + +       + +   +        GV+L EELS L+K +
Sbjct: 399 IDGTLSSFYSSAVSGLGQATAGATTRLNSQESIEQLVRSQRDAVSGVSLDEELSDLLKYQ 458

Query: 456 QSYNISNKLIMFTDKML 472
           +++  S+++    DK+L
Sbjct: 459 RAFQASSRVFQTIDKLL 475


>gi|294635619|ref|ZP_06714095.1| flagellar hook-associated protein FlgK [Edwardsiella tarda ATCC
           23685]
 gi|291091002|gb|EFE23563.1| flagellar hook-associated protein FlgK [Edwardsiella tarda ATCC
           23685]
          Length = 552

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/555 (13%), Positives = 161/555 (29%), Gaps = 83/555 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  N A    A    NI +     Y R+      +             V V
Sbjct: 1   MANLINNAMSGLNAAQTALAVTSNNINHVYTAGYNRQSVSFAENNGTSTPAGFIGNGVVV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                E        L    S +          +  + + AD    NS +  +     +L+
Sbjct: 61  SGINREYNQFIVNQLRQGQSTLATTATYHQQISQIDDLLAD--STNSLSANMQNFFKNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +     S+    +TVI NA  +   F T+   ++ + ++ +  +      +  +  ++  
Sbjct: 119 NLVSYPSDSAARQTVISNANGLTAQFKTTDAYLRNLESNTNLTVSNSAEQINDYAKQIAS 178

Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I   T +      +D LDQRD +  ++++II +   +++     +  + G +L + 
Sbjct: 179 LNNRISELTGASGGTAPNDLLDQRDQMASELNQIIDVDISMQDGAM-NISFAGGLSLVQG 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI--------RDSV 282
                     +S   +      +  G  +S    + +  G +  + +         R+ +
Sbjct: 238 GDAYGVKAVPSSSDPSRT-TLAYDRGNGLSEVPEARIRGGSLAGVYRFRSEALDNTRNQL 296

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
             I  +      +V            G+              +          E I    
Sbjct: 297 GQIALSMAHAFNQVQAEGVDLNGEKGGDLFGFAQPESLANGNNTSKASLSASYEDIDKVQ 356

Query: 343 QYR-------------------------------------------------SNPSFLRD 353
                                                               ++   LR 
Sbjct: 357 ATDYRVDFKDGKWNITRLADGSQQTVTPKKDGSDTVLKFDGLKVKINDTPAENDSFKLRT 416

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------INTNVTLLEY 403
             +V   F   + + A             +     +  A           +    TL   
Sbjct: 417 TSTVVSGFDVKISDPAKIAAASLASGTGKDHEVGDNTNAQKMLDLQNKKLVGGKATLSGA 476

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +G +    + S   +   + V   ++++  +  GVNL EE   L++ +Q Y  +++
Sbjct: 477 YAGLVGTVGNQTNSSKVDNKAQENVVKQLTKAQQSVSGVNLDEEYGNLVRFQQYYMANSQ 536

Query: 464 LIMFTDKMLQTLLEG 478
           +I     M   LL  
Sbjct: 537 VIQTATTMFNALLSI 551


>gi|300114793|ref|YP_003761368.1| flagellar hook-associated protein FlgK [Nitrosococcus watsonii
           C-113]
 gi|299540730|gb|ADJ29047.1| flagellar hook-associated protein FlgK [Nitrosococcus watsonii
           C-113]
          Length = 647

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/430 (13%), Positives = 133/430 (30%), Gaps = 17/430 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M    +     +    A +  A+   NI N +   + R+                    V
Sbjct: 1   MPSSDLLGIGASGLLAAQRALATTSHNIANVNTPGFSRQRAELAARLPEFTGQGFIGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T R    +   +     +S   Q +      A  + + AD       +       ++
Sbjct: 61  DVTTVRRAYDSFLTEQARHATSEYAQSKAFHDLAAQVDNLFAD--SETGLSTSSQHFFNA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            ++ + + S     + ++   E       +    + ++    +  ++  ++ +    S +
Sbjct: 119 AQALANDPSSPAARQMLLTEGETFEARVRSLDGRLSELDEGINTRLQATVAEVNTLSSSI 178

Query: 171 TVVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N  I+      +    +D LDQRD L+Q +S+   ++ + +++  + V+   G +L 
Sbjct: 179 AGLNQQIRDLRGQHNDQPPNDLLDQRDQLIQDLSQKAAVTVLPQDDGSLNVFIGKGQSLV 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                       NSY  +         G V   +   ++  G++ ALL  RD V+   +N
Sbjct: 239 TGDHSHSLTTLANSYEASRLEVGYATKGGVTPISD--SIQGGELGALLSFRDEVLEPSRN 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L ++A  +  SF+E+  +  + +   G      I             T         + 
Sbjct: 297 ALGQLAVGVAQSFNEQHRLGMDPQGELGGDFFAPIDSNTAVSLPRADNTGDGVIAVAISD 356

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDPVAGINTNVTLLEYARNS 407
           +                  L    D       +F       D +    T+ ++       
Sbjct: 357 ASKLTDSDYRLDRNGAGFTLTRLSDNQAFSLSAFPGGAETVDGLTLNLTSGSINGGDSYL 416

Query: 408 IGWLEKNRSD 417
           I         
Sbjct: 417 IQPTRTAAQQ 426



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/389 (12%), Positives = 107/389 (27%), Gaps = 9/389 (2%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                 ++S          S        S + LG+  +  A+   +          ++  
Sbjct: 266 GGVTPISDSIQGGELGALLSFRDEVLEPSRNALGQLAVGVAQSFNEQHRLGMDPQGELGG 325

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           D    I+   +              A+    ASK    D+   R+     ++ +      
Sbjct: 326 DFFAPIDSNTAVSLPRADNTGDGVIAVAISDASKLTDSDYRLDRNGAGFTLTRLSDNQAF 385

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             +       T DG TL  T     +    +SY +          G+ + ++       G
Sbjct: 386 SLSAFPGGAETVDGLTLNLT---SGSINGGDSYLIQPTRTAAQQFGMAL-TDSARIAAAG 441

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            I+    + +                L    + +  +  ++              LD   
Sbjct: 442 PIRTEANLGNGGTGQISAAAVTNTTGLPLPPNGEVTLTYDAAARQFNVSGGPGGTLDFDP 501

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               +      P        +            +   L      +    ++ +   +   
Sbjct: 502 ATESNGKEFDLPSVGGLNFIIS-----GVPADGDTFMLQNNTGGVGDNRNALSLAGLQTK 556

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
               +  ++  E     +  +      +       + + +          GVNL+EE + 
Sbjct: 557 PIFQDGTMSYQEQYGRLVAEVGARTRQAEANQDTHKTLLDQAVAEKEGVSGVNLEEEAAN 616

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           LI+ +Q++  + ++I   D M QTLL  V
Sbjct: 617 LIRFQQAFQAAARVISTADTMFQTLLGAV 645


>gi|170021354|ref|YP_001726308.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739]
 gi|169756282|gb|ACA78981.1| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739]
          Length = 458

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASSVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|188492642|ref|ZP_02999912.1| flagellar hook-associated protein FlgK [Escherichia coli 53638]
 gi|188487841|gb|EDU62944.1| flagellar hook-associated protein FlgK [Escherichia coli 53638]
          Length = 458

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|291526818|emb|CBK92404.1| flagellar hook-associated protein FlgK [Eubacterium rectale M104/1]
          Length = 569

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/566 (14%), Positives = 170/566 (30%), Gaps = 91/566 (16%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------S 46
              F    +   N+     +   N+ N +   YVR+    +                  S
Sbjct: 5   FGSFYVGSSGLKNSQNALNTTANNMANVNTTGYVRQQVRFSDKHYITRNNPTAGTNIQQS 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V+V           DK     +   G    L S  +  E +   +         IS+
Sbjct: 65  GLGVSVSDVAHVRDIFLDKSYRQENGRKGFYSTLYSTTSYVEDIMQ-EMNGAEFKESISE 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           L  + + Y K+ +       +I  +E  +   NT   ++QK +++ + +I+ ++  +   
Sbjct: 124 LWQAFQEYGKDPTNSTKQNLIIQKSELFLTRCNTVYSDLQKYQSNINLQIKDQVDRINEI 183

Query: 167 LSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             ++  +N  I+   +     A    D RD L+ +++    I     +   + +      
Sbjct: 184 GDKIYALNLEIQKTESGGVETAMTARDARDSLIDELAGYAKIEAEEDSTGYVRIKLEGQQ 243

Query: 226 TLFETVPRDINFEK----------MNSYTVTSESNPIFID-------------GVVVSSN 262
            + +     I   +              T      P+F D                 +  
Sbjct: 244 FVQDNKCNHIGLTEEKGTGFYTPYWPHITTQESYMPVFSDVALPSALAERVGCTQTTNIA 303

Query: 263 QGSAVPKGKIKALLQIR-------------------DSVVPIFQNQLDEMARVLIGSFSE 303
                  G +KALL  R                   D+VV   Q ++  +AR ++ + ++
Sbjct: 304 TSLNNDIGSLKALLVSRGSEYGTYDFMSEENYSRVEDNVVMETQAEISYLARNIMMAMND 363

Query: 304 ----------------------KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                                    +  +    P    A    D   ++     +    N
Sbjct: 364 IFCPNTTYTAADGTTYTVLDTANCSVGADGSLPPHELFAREGYDRYTQMEIDGKQFYVYN 423

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNV-----KNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            + ++N S     G+VS             +            D   K +  + +     
Sbjct: 424 DETKANNSSWYKLGNVSVNPKLAAQVTLMPSYKQDGSANYGLADQITKAWSAENLYINPK 483

Query: 397 NVT---LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           + +      Y    I  L  N S               I    +  +GV+  EEL+ +IK
Sbjct: 484 DTSKCNFEGYYDKIISHLGTNGSIYKASSDTMTSTAAAIDNQRNQIMGVSSDEELTNMIK 543

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            + +YN S++ I    +M + +++ +
Sbjct: 544 YQSAYNASSRFITVISQMTELIVQLI 569


>gi|118589965|ref|ZP_01547369.1| flagellar hook-associated protein K [Stappia aggregata IAM 12614]
 gi|118437462|gb|EAV44099.1| flagellar hook-associated protein K [Stappia aggregata IAM 12614]
          Length = 454

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 209/443 (47%), Gaps = 10/443 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             + V        +     L + +S    Q  + +        + D     S    +  L
Sbjct: 12  GGLKVDGIGRVTDSALYSSLLSSTSTGSSQEAVLAGLIRLAETTGDTQNQMSAAAKLGAL 71

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           + SL+SY+ + S  I  + V+  ++++V+   + +  VQ +R  AD ++   +  +   L
Sbjct: 72  KLSLQSYASDPSNAIQAQDVLQASKDMVRTLQSGSELVQDVRTKADADMATSVREINTLL 131

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +L  +N  I   T S  D  D  D RD +L K+SE IGI+T+ R+N D+VVYT  G TL
Sbjct: 132 KQLEDLNSVIVRGTQSGADVTDAHDSRDQVLLKLSEEIGITTLNRSNGDIVVYTDSGVTL 191

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIRDSVVPIF 286
           FET  R + FE    Y   +  N + +D V V        +  G+++ L ++RD V   +
Sbjct: 192 FETKARSVTFEPTIVYGAATTGNSVMVDDVPVAGPGALMEIKSGRLQGLAELRDEVAVTY 251

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------QGISETICV 340
           Q+QLDE+AR LI +F+E D   G + +  GLF   G   +             I+     
Sbjct: 252 QSQLDEIARGLIEAFAESDQSGGGNPDQAGLFTWSGAPAVPASGTLVTGLAAEIAVNANA 311

Query: 341 NPQYRSNPSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +P    +   LRDGG        + +N    AG+ D +     +F+K+ +FD    ++  
Sbjct: 312 DPDQGGDLDRLRDGGISDPLDPNYNYNPSGAAGFSDRLQELVSAFDKDTVFDSGVELDAT 371

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            +L  +A +S+ WLE  R           V+ +  +E+ +N  GVN+ EE++ L+++E+S
Sbjct: 372 DSLSGFAASSVSWLEAGRKTMTSNVEVQTVILSRTAENLNNKTGVNIDEEMTLLLEIERS 431

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y+ + +LI   D ML+ LL   +
Sbjct: 432 YSAATRLISAVDAMLEDLLAAAR 454


>gi|331645424|ref|ZP_08346528.1| flagellar hook-associated protein FlgK [Escherichia coli M605]
 gi|59889786|emb|CAH19142.1| Lateral flagellar hook associated protein 1 (FlgK-like)
           [Escherichia coli]
 gi|284920050|emb|CBG33107.1| lateral flagellar hook associated protein 1 (FlgK-like)
           [Escherichia coli 042]
 gi|331045586|gb|EGI17712.1| flagellar hook-associated protein FlgK [Escherichia coli M605]
          Length = 458

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|327254560|gb|EGE66176.1| flagellar hook-associated protein FlgK [Escherichia coli STEC_7v]
          Length = 458

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 155/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYNTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                                +    +           G   +VT+ +   + I  +   
Sbjct: 349 ----------------DESGNSDNLQALINISTEPLEIGNLGSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 TQQNQTEVTAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|296445195|ref|ZP_06887155.1| flagellar hook-associated protein FlgK [Methylosinus trichosporium
           OB3b]
 gi|296257369|gb|EFH04436.1| flagellar hook-associated protein FlgK [Methylosinus trichosporium
           OB3b]
          Length = 495

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 234/495 (47%), Gaps = 16/495 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MSL      A       S Q + + RNI  A    Y  + ++ + +    V V       
Sbjct: 1   MSLSNAGAIANQSLGAISSQISLVSRNIAGASTTGYAAKTSLLSTNASGGVDVNGVARAT 60

Query: 60  K-NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRDSLE 112
              +F   L A S       L    + L ++         D   + SP   ++ L  +L+
Sbjct: 61  SLALFQNALQATSGQAASSALSSGLDQLDQLYGLSTSTATDTSSSRSPAALVAALSSALQ 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           SYS + S+    ++V+  A+ + Q+ N  +  VQ +RA AD +I   + ++   L +   
Sbjct: 121 SYSASPSDLTTAQSVLTAAQSLAQSLNDGSTAVQNMRAQADGDIATAVDDINSLLGQFQK 180

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N AI   T +  D     DQRD LL K+S  IG+ TI R NNDMV+YT  G TLFET  
Sbjct: 181 ANAAIVSGTQTGRDVSALEDQRDELLNKLSADIGVRTITRANNDMVIYTDSGATLFETTA 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           R+++F     Y+ ++  + +++DGV V+  +    +  GK++ L Q+RD V P FQNQLD
Sbjct: 241 RNVSFTATAGYSASTVGSSVYVDGVPVTGADAAMPIQSGKLQGLTQLRDVVAPQFQNQLD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLF----IADGIKDLDNKLCQGISETICVNPQYRSN 347
           E+AR LI SF+E D   G +                  +   L   I+     +P    +
Sbjct: 301 ELARGLIVSFAETDQTGGGASAPGLFTYSDATDVPSVGIIPGLAGQITVNANADPTKGGS 360

Query: 348 PSFLRDGGS---VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
              LRDGG     +  F +N    AGY D IN    + +    FD  AG+ TN ++ +YA
Sbjct: 361 LDRLRDGGISDPGNSAFDYNATGDAGYTDRINQLITALSTPQDFDTTAGVGTNQSVADYA 420

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +SIGWLE  R  +       + + +  S++ SN  GVNL +++S ++ +E +Y+ S KL
Sbjct: 421 SSSIGWLEAQRQQASSSASYQETLVSQTSQALSNATGVNLDDQMSQMLDLENAYSASAKL 480

Query: 465 IMFTDKMLQTLLEGV 479
           +   D M + L + +
Sbjct: 481 LAAVDAMYKALFQAL 495


>gi|315125990|ref|YP_004067993.1| lateral flagellar hook-associated protein [Pseudoalteromonas sp.
           SM9913]
 gi|315014504|gb|ADT67842.1| lateral flagellar hook-associated protein [Pseudoalteromonas sp.
           SM9913]
          Length = 435

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/481 (17%), Positives = 164/481 (34%), Gaps = 50/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57
           MS+    N A +  N A+       +N+ NA  + Y R+      S      V V +   
Sbjct: 1   MSM---LNNALSGLNAANIALTVSGQNVANAAVEGYSRQQAQFKTSNVYLGGVEVASVDR 57

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                 +  +   +S        QS+    E +   D  N    + ++ L D+L + +  
Sbjct: 58  VVDAFLNDDIWRTNSDTTYYENKQSYLGFIEQIIGTDSLN--LNNSLASLTDALNAAATK 115

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  +  + +AE  +Q+       +       + ++     N+     ++  +N +I
Sbjct: 116 PDSQAFRQQFLSSAEGFMQDIAQINGALAGQATKLNAQMSNVALNVSSITKQIAEINSSI 175

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              TA+K    +  D R+ L+ ++S  IG+S + R+N  + + T  G  L          
Sbjct: 176 GLATANKQSTAELKDNRERLVNQLSGHIGVSIVERDNGFIDISTLSGAPLVVGSKAASIS 235

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               + T         +D              G+   L+ + + V+      L+ +   L
Sbjct: 236 VNGTTVTSNFIGQEFTLD----------KNVGGQFGGLISVDNDVIKPTLATLNSLVADL 285

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               +       +  N PG  +                 TI +NP   ++    +D  + 
Sbjct: 286 ADDMNGALQSGFDLNNDPGEALFTYNPLNP-------LGTIEINPAITTDKLGFKDSSTS 338

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 N+ N+                      +AG     TL       +G L      
Sbjct: 339 GPGDNSNIANIVA-------------------SMAGKGDKFTL------LVGDLAITSKQ 373

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +    +  +  +   +  +  GVNL EE + L+  +Q Y+ + K+I   D+M ++LL+
Sbjct: 374 NLNSITTATNLSENAIAARDSYSGVNLDEEAANLMHFQQMYSANAKVISTADQMFKSLLQ 433

Query: 478 G 478
            
Sbjct: 434 M 434


>gi|238922533|ref|YP_002936046.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC
           33656]
 gi|238874205|gb|ACR73912.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC
           33656]
 gi|291526373|emb|CBK91960.1| flagellar hook-associated protein FlgK [Eubacterium rectale DSM
           17629]
          Length = 569

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/566 (14%), Positives = 170/566 (30%), Gaps = 91/566 (16%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------S 46
              F    +   N+     +   N+ N +   YVR+    +                  S
Sbjct: 5   FGSFYVGSSGLKNSQNALNTTANNMANVNTTGYVRQQVRFSDKHYITRNNPTAGTNIQQS 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V+V           DK     +   G    L S  +  E +   +         IS+
Sbjct: 65  GLGVSVSDVAHVRDIFLDKSYRQENGRKGFYSTLYSTTSYVEDIMQ-EMNGAEFKESISE 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           L  + + Y K+ +       +I  +E  +   NT   ++QK +++ + +I+ ++  +   
Sbjct: 124 LWQAFQEYGKDPTNSTNQNLIIQKSELFLTRCNTVYSDLQKYQSNINLQIKDQVDRINEI 183

Query: 167 LSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             ++  +N  I+   +     A    D RD L+ +++    I     +   + +      
Sbjct: 184 GDKIYALNLEIQKTESGGVETAMTARDARDSLIDELAGYAKIEAEEDSTGYVRIKLEGQQ 243

Query: 226 TLFETVPRDINFEK----------MNSYTVTSESNPIFID-------------GVVVSSN 262
            + +     I   +              T      P+F D                 +  
Sbjct: 244 FVQDNKCNHIGLTEEKGTGFYTPYWPHITTQESYMPVFSDVALPSALAERVGCTQTTNIA 303

Query: 263 QGSAVPKGKIKALLQIR-------------------DSVVPIFQNQLDEMARVLIGSFSE 303
                  G +KALL  R                   D+VV   Q ++  +AR ++ + ++
Sbjct: 304 TSLNNDIGSLKALLVSRGSEYGTYDFMSEENYSRVEDNVVMETQAEISYLARNIMMAMND 363

Query: 304 ----------------------KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                                    +  +    P    A    D   ++     +    N
Sbjct: 364 IFCPNTTYTAADGTTYTVLDTANCSVGADGSLPPHELFAREGYDRYTQMEIDGKQFYVYN 423

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNV-----KNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            + ++N S     G+VS             +            D   K +  + +     
Sbjct: 424 DETKANNSSWYKLGNVSVNPKLAAQVTLMPSYKQDGSANYGLADQITKAWSAENLYINPK 483

Query: 397 NVT---LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           + +      Y    I  L  N S               I    +  +GV+  EEL+ +IK
Sbjct: 484 DTSKCNFEGYYDKIISHLGTNGSIYKASSDTMTSTAAAIDNQRNQIMGVSSDEELTNMIK 543

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            + +YN S++ I    +M + +++ +
Sbjct: 544 YQSAYNASSRFITVISQMTELIVQLI 569


>gi|323171070|gb|EFZ56719.1| flagellar hook-associated protein FlgK [Escherichia coli LT-68]
          Length = 458

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +               + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|327192295|gb|EGE59260.1| flagellar hook-associated protein FlgK [Rhizobium etli CNPAF512]
          Length = 486

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 158/485 (32%), Positives = 259/485 (53%), Gaps = 8/485 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N  Q+I N   QQ + I  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSALNSVQSIFNTTGQQSSVISTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     ++    Q+ L +     + +   + Y  SP+ Y+S  + +L++++ + S 
Sbjct: 61  TALLAQYLQSNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLSAFQQALQTFATSPSS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               ++ +  A+++  + NT++  VQ IR +AD EI  ++S+L   LS+    N+A+K  
Sbjct: 121 TTSAQSAVTAAQDLANSLNTASDGVQSIRTEADAEIATQVSSLNTLLSQFETANNAVKLA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+ LL++IS I+G++++VR+NNDM +YTSDGT LFETVPR + F   
Sbjct: 181 TATGADTSSALDEREKLLKQISSIVGVTSVVRDNNDMALYTSDGTVLFETVPRTVTFVPT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y   +E N I+IDGV + + +GS     G ++ALLQ+RD + P FQ+QLD++A+ L+ 
Sbjct: 241 TTYVAGTEGNAIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQDQLDQIAKALVQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLD------NKLCQGISETICVNPQYRSNPSFLRD 353
            FSE D              +    +          +   IS  + V      + + LRD
Sbjct: 301 VFSETDGSTSAPGLFVWTTASGTAGETPSESDDITGIASTISVNLAVVTSEGGDATKLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G++S     N    +G+ D ++    +  +   F   AG++++ +L +YA  SIGWLE+
Sbjct: 361 -GTISGITDLNTSGDSGFSDNLDALYTALTEQRTFSADAGLSSSQSLTDYASASIGWLEQ 419

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            RSD+      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++   D+M Q
Sbjct: 420 YRSDATSASETTAAALSRSDEAYSNEAGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQ 479

Query: 474 TLLEG 478
           +LL+ 
Sbjct: 480 SLLDI 484


>gi|88799029|ref|ZP_01114610.1| Flagellar hook-associated protein [Reinekea sp. MED297]
 gi|88778256|gb|EAR09450.1| Flagellar hook-associated protein [Reinekea sp. MED297]
          Length = 1025

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/383 (13%), Positives = 118/383 (30%), Gaps = 21/383 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MSL    + A            +   NI NA+   Y R++ +   +           + V
Sbjct: 1   MSL---LSTAITGIKAHQTALETTGHNISNANTPGYSRQEAVMATNNPLFRGVGYIGQGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + T R          L   +S     +  +      + + ADD         + +   +
Sbjct: 58  NISTVRRVTDEFLTIQLRQDTSTFHDLQTYRESIEQVDRILADDA--TGLQPQLDRYFAA 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+  + N +       V+  A+ +V  F T +R +Q I +  + +++     +      +
Sbjct: 116 LQGAADNPAYIPSRDVVLGEAQGLVDRFETISRYLQDINSTLNGQLKTSTEQVNAIAKGI 175

Query: 171 TVVNDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N+ I      A+    +D  D+RD L++++SE++ +  +        +   +G  L 
Sbjct: 176 AELNEEIVTARGDAAAQPPNDLYDKRDELVRQLSELVEVDVVKVGETY-NIAIGNGQPLV 234

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                +      +                  + +    +  G I   L+ R   + +  N
Sbjct: 235 LKYDANRLEATPSLEDPNRYGIRYT--SKTENLDITDNITGGSIGGRLEFRSEALDLAVN 292

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD-GIKDLDNKLCQGISETICVNPQYRSN 347
            L  +A   +   + +     + E   G                     T         N
Sbjct: 293 SLGRLAVAFVQETNAQHKQGIDLEGRFGNDFFRDMNDPSLTGDRVYAYGTNKPPNDRVFN 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAG 370
            +F       + ++  N+     
Sbjct: 353 VTFENTKELTTSEYTLNLPGPDA 375



 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/448 (12%), Positives = 116/448 (25%), Gaps = 16/448 (3%)

Query: 34   KNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93
              Y             V  VT R+  +        ++S+             ++  ++  
Sbjct: 590  TGYGASAYEIAEELNLVEGVTARAYTEVQLSNF--SNSTDTSGAPTYNPHNPMEVWVNGF 647

Query: 94   DHYNNSPTHYISKLRDSLESYS---KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
            +     P    +   D          N +            +++     +    +     
Sbjct: 648  ELTQEIPNQNQNIYMDGFPVEVPEEMNPNFLADRINHHYELQQLGITAKSDGETLTITDE 707

Query: 151  DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            + +  +     +         V++ A         +  D++D  D       E   +   
Sbjct: 708  NGNDILVEMRGD-----KPQPVISGAPVLPPGIPGNVTDYIDPGDTFEISTGESWSVDPF 762

Query: 211  VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
               N +  +   +G    E  P        +  T T   + I+ DG  V +         
Sbjct: 763  E-GNTNGQLSNLNGYDFSEGGPYRYEMYLPDGRTGTVRLDGIYADGDAVKAAFEEQ---- 817

Query: 271  KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
             I+A L            Q +   +V +                  + +           
Sbjct: 818  -IQAQLDSPGRAEVDIDEQGNVSYKVFMRVEGTGTQAVSRVNVGGQVDVVMADGIRLETD 876

Query: 331  CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
             +       V     S   F    G   +                N            D 
Sbjct: 877  PEVGGIFNGVPDARSSYMGFQFQVGGRPEAGDEFTIEWNDAGVSDNRNALDLVGLETTDT 936

Query: 391  VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            +  I+  +T  E    ++  +    S +      S+ V         +  GVNL EE + 
Sbjct: 937  INDIDGGMTFTESYSQTVEQIGTLTSQAQIRSDASRAVLEGTQSEVDSVQGVNLDEEAAR 996

Query: 451  LIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            LI+ + +YN + K+I    ++  ++L  
Sbjct: 997  LIEFQVAYNANAKVIAVAQELFDSILAA 1024


>gi|269796409|ref|YP_003315864.1| flagellar hook-associated protein FlgK [Sanguibacter keddieii DSM
           10542]
 gi|269098594|gb|ACZ23030.1| flagellar hook-associated protein FlgK [Sanguibacter keddieii DSM
           10542]
          Length = 475

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/499 (13%), Positives = 148/499 (29%), Gaps = 53/499 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS  +  + A +      Q      +N+ N +   Y R+                     
Sbjct: 1   MSTFSGLSTALSSLITQRQALEVAGQNLANINTPGYTRQRVDMQSVSAGQGATMFSQGNQ 60

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V  V          D  +   SS+              E   A +   N  +  + 
Sbjct: 61  VGNGVQAVGVARLGDIFMDARVRTTSSSAAYLAARTDAFKRLESTIA-EPGANGISADLD 119

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           KL  S      + + D +G  +++N+  V ++ +T    V         + E  +S++  
Sbjct: 120 KLWASWSDVVNSPTSDAVGAVLLENSAAVQRSISTGYTAVVTQWDQTRSKAESLVSDVNS 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             + + ++N+ I+  T S  +A++ +DQR+VL   +S + G +  ++ N    V    G 
Sbjct: 180 AAASVALLNEQIQQITVSGGNANELIDQRNVLTTALSSLAGATVRLQPNGTADVNI-GGN 238

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI------- 278
            +             +   V +  N + ++     +   + +  G++  +L +       
Sbjct: 239 PIVSGSSAQKLKLVGSREMVGATGNEVRVEWDRTPAGTPAPLEGGQLAGVLSVLAPASGG 298

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
              ++       + +A  L  S +       +     G+       D             
Sbjct: 299 AGGMLAEAAESYNVLATKLATSVNTLHSAGADRAGTTGVDFYSLPTDGT----------- 347

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
              P        +     ++ +   N  N     D I     S +               
Sbjct: 348 ---PAALGLRVAITSPSQIAVRNPANGANDTSVADAIGQLGASKDGPDTV---------- 394

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
                    +         +      ++               V+  EE   ++  +++Y
Sbjct: 395 -----WSTFVVSTGVKAKAALQSATVAEAARQTAEGLQLAQTSVDQDEESINMLSFQRAY 449

Query: 459 NISNKLIMFTDKMLQTLLE 477
             + +++   D+ML  L+ 
Sbjct: 450 QGAARVMTAVDEMLDQLIN 468


>gi|323976263|gb|EGB71356.1| flagellar hook protein FlgK [Escherichia coli TW10509]
          Length = 458

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYNTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 TQQNQTEVTAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|83716869|ref|YP_438395.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           E264]
 gi|167614843|ref|ZP_02383478.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           Bt4]
 gi|257141428|ref|ZP_05589690.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           E264]
 gi|83650694|gb|ABC34758.1| flagellar hook-associated protein 1, putative [Burkholderia
           thailandensis E264]
          Length = 452

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 151/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    A+Q   +  +N  N     Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAANQSLLAASQNTANIATGGYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN---SPTHYISKLRDSLESYSKNLSE 120
            + L   +   G+    Q++    E +   +  +    +      K   +LE+ S N  +
Sbjct: 62  TQQLWQTAGQYGRYDAAQTYFDQLEALFGGNPVDGKTKANDLGFGKFIGALEAASGNPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VID A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVIDAANSMTKQFNNMRSVLTNQLRSIEQQRVTTVEQVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  D    +DQRD  +  +S   G+  + + N  + V  ++G  L             
Sbjct: 182 QASGADVSALMDQRDAAVDDLSRFAGVRVVQQANGTVDVSMTNGQPLVVGAQAGRIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    +    + +     +    +    G++  L +    V+      L  +A      
Sbjct: 242 DA----AGQQTLSLTFGSQTMPLRTGSLGGELLGLAEFEGEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPL----------------ITYDAATGLLGIDPDVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + +    LI     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNSNLLALIEIGSTSIDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVASELFETTLNSL 452


>gi|284007169|emb|CBA72453.1| flagellar hook-associated protein FlgK [Arsenophonus nasoniae]
          Length = 545

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 72/546 (13%), Positives = 179/546 (32%), Gaps = 74/546 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----NVTVVTQ 55
           MS  ++ N A +    A    ++I  NI N+  ++Y R+ T             V V   
Sbjct: 1   MS-SSLMNTAMSGLKVAQTALSTIGSNIANSKVESYHRQTTTLATDGSNNNINGVKVSGI 59

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           + E     +   +   +  G++++   F    + +      +      +++   SL++ S
Sbjct: 60  QREYDEFINAHYNKAVTEQGERKIYAEFALELDKLM--SASDTDLASSMTEFFTSLQTLS 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +   L   VI+ A+ ++  F +  ++   +    +  I      + +   ++  +N 
Sbjct: 118 TDAASAPLRTEVINKAQAMISRFKSVEQQFNTMEQRLNGNIGQMADKVSQLAQQVAKLNG 177

Query: 176 AIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            +        +  ++ LD+RD L +++S + GIS I +++    +  ++G +L      +
Sbjct: 178 EMTKIKGLQGYVPNEMLDRRDQLTRELSTVAGISVIRQDDTI-NINLANGLSLVNGTKAN 236

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 ++      +                ++  G++   L +RD V+   + +++++ 
Sbjct: 237 KITAISSAADPAQITLAYDDGINPPREIDTRSITGGELAGALAVRDEVLQPNRQKINQLG 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET--------------ICV 340
            +L  S ++      + +   G  +    K       Q    +              I  
Sbjct: 297 LILTESINQVQQAGFDLQGNAGQALFQTGKPSIISHNQNQGTSSFATQFTDATQVKGIDY 356

Query: 341 NPQYRSNPSFLRDGGSVS------------------------------------------ 358
              +  N   +    + +                                          
Sbjct: 357 AMMFDGNNWVVTQQSTGASVNVTSTAATANHGKKLTFDGMEIAPTSAPQAGDKFIIKSVD 416

Query: 359 ---KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-----GINTNVTLLEYARNSIGW 410
                    + N AG            +   I + +A      +N   TL +      G 
Sbjct: 417 EVISGLSVAITNPAGIAAASQAGTGQADNTNIKNLLALQDKKLVNGTSTLSKAYTAVAGD 476

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    + +        V+     +   +  GVNL EE   + ++++ Y  + K+I   + 
Sbjct: 477 VASKANQAKADFTAQSVITKSYLQKQQSVSGVNLDEEYLEMSRMQEFYMSNAKVIQTANS 536

Query: 471 MLQTLL 476
           + +TL+
Sbjct: 537 LFETLM 542


>gi|297618069|ref|YP_003703228.1| flagellar hook-associated protein FlgK [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145906|gb|ADI02663.1| flagellar hook-associated protein FlgK [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 618

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/439 (12%), Positives = 139/439 (31%), Gaps = 39/439 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S+       +               N+ NA+ + Y R+  +   +               
Sbjct: 3   SMFLGLEIGRRAIMTQQTALDVTGHNVANANTEGYSRQVAVMVTTPAYHSPALTQNLSVG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   R       D  +   ++  G  + LQ+     E +  ++  +      +
Sbjct: 63  QIGTGVKVSEIRRLRDGFVDMQVRDETNTTGYWQALQTALDKIEAV-INEPSDEGLRGVL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                + +  S++   + + + V      V   F+    ++Q++R D + +++ ++  L 
Sbjct: 122 DNFWQAWQDLSESPENESVRQVVAQRGMAVADTFHHIYNQLQELREDLNSQVKAKVDELN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            + +++  +N  I+  T +  + +D  D+RD+LL ++++I+    +   +  + V     
Sbjct: 182 SYATQIADLNLQIQAITIAGKEPNDLKDRRDLLLDQLAKIVDAKIVYELDGMVTVMVGGT 241

Query: 225 TTLFETVPRDINFE---------KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
             +       +              +          I  D           +  G++  L
Sbjct: 242 PLVQGITTMKVGLNADTNGIYKVVWDPDPSGHPGTSITGDPADDPGYTELHLKSGELLGL 301

Query: 276 LQIRD-----------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           L+ R            ++VP   N+L+ MA+ ++ + +       +  N           
Sbjct: 302 LEARGPADHSTLGSERNLVPDLMNRLNLMAKTVVMTTNALHRAGYSLNNTTPYPDGLDFF 361

Query: 325 DLDNKLCQGISE-TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
              N+         I V  +  S+P  +    + +     N  N     + +        
Sbjct: 362 KQANEDSITEWAKYIQVADEIVSDPKNIAAALNRTSDDTGNPVNFGDGANALKIAQLKHT 421

Query: 384 KNFIFDPVAGINTNVTLLE 402
            N      A    +VT  +
Sbjct: 422 LNRNEYWTASDEIDVTFPD 440



 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 71/251 (28%), Gaps = 2/251 (0%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              + +  +   Y   ++        +  + N+ S      +          +   ++ L
Sbjct: 363 QANEDSITEWAKYIQVADEIVSDPKNIAAALNRTSDDTGNPVNFGDGANALKIAQLKHTL 422

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +           +                  G+                       +   
Sbjct: 423 NRNEYWTASDEIDVTFPDSTQFQGNFTVRYGGVDYEITMSAPAEPYQDFQEVVNAISGQL 482

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA--GINTNVTLLEYARNSI 408
              G +V  +            D              F  VA   +   VT+ +Y R+ +
Sbjct: 483 EAMGLNVGVRAEGKRLVFYSSSDQFQGVTGGTFPASGFSNVAARTMIQQVTVDDYWRSQV 542

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +     ++  +    +V+ + +      T GV+L EE+  +IK + +YN + + I   
Sbjct: 543 SSVGVISQEATRMVENQEVLLDQLEAKRQATSGVSLDEEMVNMIKFQHAYNAAARYITVI 602

Query: 469 DKMLQTLLEGV 479
           D+ +  ++  +
Sbjct: 603 DEAVDVIVNRM 613


>gi|256020234|ref|ZP_05434099.1| flagellar hook-associated protein FlgK [Shigella sp. D9]
 gi|300817263|ref|ZP_07097481.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1]
 gi|332281396|ref|ZP_08393809.1| lateral flagellar hook associated protein 1 [Shigella sp. D9]
 gi|300530239|gb|EFK51301.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1]
 gi|332103748|gb|EGJ07094.1| lateral flagellar hook associated protein 1 [Shigella sp. D9]
          Length = 458

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 160/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|146311252|ref|YP_001176326.1| flagellar hook-associated protein FlgK [Enterobacter sp. 638]
 gi|145318128|gb|ABP60275.1| flagellar hook-associated protein FlgK [Enterobacter sp. 638]
          Length = 546

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/547 (13%), Positives = 166/547 (30%), Gaps = 73/547 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     ++  NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINSAMSGLSAAQASLNTVSNNISSYNVAGYTRQTTVLGAANSTLTGGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            A  + + +D     S +  +     SL+
Sbjct: 61  NGVQREYDAFITNQLRAAQNQSSGLTTRYQQMAKIDDVLSDTT--KSLSTTLQGFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    +TV+  A+ +V  F  + + ++      +  I   +  +  + +++  
Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKVTDQYLRDQDKQVNTAIATSVDQINSYATQIAT 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     V   +G TL + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVDVSVQDGGTYNVSFGNGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     ++      +                A+  G +  L+  R+  +   +N L
Sbjct: 239 SSVTKLAAMPSNADPARMTVAYVDPAAGNVEIPDKALNTGSLGGLITFRNEDLDKTRNNL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL-------------------- 330
           ++MA     S +++     ++ +  G  +         +                     
Sbjct: 299 NQMALAFADSMNQQHEKGFDANHDAGGKLFSFGTPSVMENGKNTGSATVTATIDDSSKVQ 358

Query: 331 ----------CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                            +     + + P    D      K   +         ++    D
Sbjct: 359 ATDYKLEYNGSDWTVTRLSDKTTFTATPDASGDMTFDGVKINVSGAAANKDSFVVKPVVD 418

Query: 381 SFNK-----------NFIFDPVAGINTN---------------VTLLEYARNSIGWLEKN 414
           +                  D  AG + N                    Y       +   
Sbjct: 419 TIVNMELLIKDESKLAMASDATAGESDNRNGKALLALQSTKTVGGNKSYNDAYAALVSSV 478

Query: 415 RSDSHDLHMKS---QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            S +  L   S     V   +S    +  GVNL EE   L + +Q Y  + +++     +
Sbjct: 479 GSQTAALKTSSATKTNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTASTL 538

Query: 472 LQTLLEG 478
              ++  
Sbjct: 539 FDAIINI 545


>gi|324113877|gb|EGC07851.1| flagellar hook protein FlgK [Escherichia fergusonii B253]
          Length = 548

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 161/549 (29%), Gaps = 75/549 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + + + +   N+ +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTTRYEQMSKIDNLLSSET--NNVSTSLQGFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  A+ +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++++G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNKVVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +       +                 +  G +  +L  R   +   +N L
Sbjct: 239 SSARQLAAVPSHADPFRVTVAYVDATAGEIEIPEKLLTSGTLGGMLTFRSQDLDQSRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+++     ++    G       K L     Q  S+          +   
Sbjct: 299 GQLALAFADAFNKQHQAGFDATGAKGEDFFAIGKPLVLSNTQNNSDAAIKAEVINGSQVL 358

Query: 351 LRDGGSV-SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
             D          W V  LA           + N  F    +    T      +    + 
Sbjct: 359 ATDYTITWQGAGKWQVTRLASNTSFTIEPDAAGNVEFDGLKLTFSGTPKDNNSFTLKPVS 418

Query: 410 WL---------------------------------------EKNRSDSHDLHMKSQVVFN 430
                                                     K    +   +     + +
Sbjct: 419 DAVVNMDVKVKDESQIALAQEAGAGDSDNRNGQKLLDLQSNGKTVGGAKSFNDAYATLVS 478

Query: 431 HI---------------------SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +                     S    +  GVNL EE   L + +Q Y  + +++   +
Sbjct: 479 DVGNKTATLKTSSTTQNNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 538

Query: 470 KMLQTLLEG 478
            +   L+  
Sbjct: 539 TLFDALINI 547


>gi|306813297|ref|ZP_07447490.1| flagellar hook-associated protein FlgK [Escherichia coli NC101]
 gi|305854060|gb|EFM54499.1| flagellar hook-associated protein FlgK [Escherichia coli NC101]
          Length = 458

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQEYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTASMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|114706627|ref|ZP_01439528.1| flagellar hook-associated protein K [Fulvimarina pelagi HTCC2506]
 gi|114538019|gb|EAU41142.1| flagellar hook-associated protein K [Fulvimarina pelagi HTCC2506]
          Length = 469

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 128/488 (26%), Positives = 221/488 (45%), Gaps = 30/488 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSEN 59
           MSLL+VFN A++  +  SQQ A + RN+ NAD+    R+     +     V +      +
Sbjct: 1   MSLLSVFNNARSSLSVTSQQSALVARNVANADDPTATRKYASQVSERLGAVDIRAISQSS 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                + L +  +++G    L         +  D   + SP+  I+ L+D+L   + +  
Sbjct: 61  DPALYRSLISAQASLGTNETLAEALDRVRDVIGDVDASTSPSASIAALKDALTDLAASPE 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L +T +D A  +  N N +   VQ +RADAD+E++     L   LS+L  +N  +  
Sbjct: 121 NSQLQRTAVDAARSLATNLNNATMSVQTMRADADRELDEGAKRLNELLSQLETLNSKVVA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            TA+  D  D +DQRD ++ +IS  +G+S  +R NND+V+ T  G  +FET  R + F +
Sbjct: 181 GTATGADVTDEVDQRDRIVSEISSYVGVSVRLRANNDLVLSTDSGIVMFETRARSVEFTR 240

Query: 240 MNSYTVTSESNPIF---------IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
             S+  +   +            IDGV +      AV  G + A L++RD V   FQN+L
Sbjct: 241 TQSFDPSIRLDSAVAANRPGEFKIDGVSIGGTSSMAVRDGSLVAALKLRDEVGVEFQNRL 300

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D+    L+     ++   G  E                     I+    V+ +   NP+ 
Sbjct: 301 DQTGDTLVNETFAENGAPGLYE---------------RTGPATIAIAASVDYRIGGNPAL 345

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +RD G ++    +N    +G+ D +N     F+    F          TL ++  +S+ W
Sbjct: 346 IRD-GGINGSPTFNTAGESGFADRLNALVARFSDQHTFANGEL----GTLGDFTASSMAW 400

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            E  R+ +        ++     ++ SN  G+NL +E+S L+++E++Y  S KL+    +
Sbjct: 401 FEGRRATASKDASYQSIMVTRARDTLSNKTGINLDDEMSHLLELERTYQASTKLVQTVGE 460

Query: 471 MLQTLLEG 478
           +L  LL  
Sbjct: 461 LLDRLLAI 468


>gi|281412143|ref|YP_003346222.1| flagellar hook-associated protein FlgK [Thermotoga naphthophila
           RKU-10]
 gi|281373246|gb|ADA66808.1| flagellar hook-associated protein FlgK [Thermotoga naphthophila
           RKU-10]
          Length = 858

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/446 (13%), Positives = 134/446 (30%), Gaps = 30/446 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+  + N A    +        +  NI NA    Y R+  +                  
Sbjct: 4   MSMFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   V T         D      ++       + S     E + A +   +     
Sbjct: 64  LQMGTGAKVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGIRSL 122

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    ++ +    + S       V+  A+++V         ++++R D D EI   +S +
Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDDEIVQRVSEI 182

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +  L  +N+ I+         +D LD+RD +L ++S +  I+     +  + +   +
Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L  +  R++   +          + +F+    +          GK+KAL+ +RDS +
Sbjct: 243 QIVLNGSTYREL---RALERPYGKGYHELFVGNSQLIL------SDGKLKALMDLRDSSI 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  +LDE    +  S +        S  V          +  +              +
Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGSRKLE 353

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                +      + S+  +   +  +    ++  +    +          I   V     
Sbjct: 354 MGPYHTVTGIHSASSQVEIEGRRFNSDD--IVLSFGGGSSNVLNVSAGTTIGDLVGSWNL 411

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429
              S+  +  +          S    
Sbjct: 412 LGTSL-KVGTHAGGYRLYLEDSTGSL 436



 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 120/436 (27%), Gaps = 35/436 (8%)

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +  +    S      +   D                  ES    LS  +    V    E+
Sbjct: 427 LYLEDSTGSLRNRLFLSLGDSLSQMGFDTETKGYITIKESDLSGLSSGVYNINVEYTLED 486

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
             +   T + ++      ++ E       +         +               D    
Sbjct: 487 GTRQTETISVDLSSGVNLSNIEAS-----INSSSHLRAQIYADPSTGENMLVIVPDEQLS 541

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
            D    K+       T                TL         F+    +T+T  S  I 
Sbjct: 542 FDPSAVKVLSDDDFFTKSNAFVRNYEVLEYKDTLENIFYGQTGFDPTRPFTITINSTDIE 601

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQ---------IRDSVVPIFQNQLDEM--ARVLIGSFS 302
           ID  V +          K   +L           R S +  F  ++ E+   +    +  
Sbjct: 602 IDPAVDTLETLVEKINEKNTGVLADLTPHHSLVFRASSLYDFDLRMMEIKGPQGFFEAVG 661

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLC---QGISETICVNPQYRSNPSFLRDGGSVSK 359
             DP    +            K  D         +++ +  +      P  + +   VS 
Sbjct: 662 FVDPDGDPNTFDWSSSFTLVSKSDDFTTLSERFKVADILTFDRAPYDEPLNIVNQFEVSS 721

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------------INTNVTLLEY 403
               N  NLA          D    +      A                  N   +  E+
Sbjct: 722 SLAANPANLAVDVGYALENSDWNATSIKPSGGANPELLETIQNLYTRKILSNGKESFYEF 781

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  L      + +L   ++++   I  +     GV+L EE++ +IK + +++ + K
Sbjct: 782 FGGVVSELGVEAETASNLKNNTEILRQEIDNAREEVKGVSLDEEMANMIKYQHAFSAAAK 841

Query: 464 LIMFTDKMLQTLLEGV 479
           +I   D+M+QT++  V
Sbjct: 842 VITAVDQMIQTVINMV 857


>gi|300936133|ref|ZP_07151072.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1]
 gi|300458711|gb|EFK22204.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1]
          Length = 458

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTASMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSEAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|307313513|ref|ZP_07593134.1| flagellar hook-associated protein FlgK [Escherichia coli W]
 gi|306906681|gb|EFN37192.1| flagellar hook-associated protein FlgK [Escherichia coli W]
 gi|315059548|gb|ADT73875.1| flagellar hook-filament junction protein 1 [Escherichia coli W]
 gi|323181553|gb|EFZ66973.1| flagellar hook-associated protein FlgK [Escherichia coli 1357]
 gi|323379893|gb|ADX52161.1| flagellar hook-associated protein FlgK [Escherichia coli KO11]
          Length = 458

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +               + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|310816851|ref|YP_003964815.1| flagellar hook-associated protein [Ketogulonicigenium vulgare Y25]
 gi|308755586|gb|ADO43515.1| flagellar hook-associated protein [Ketogulonicigenium vulgare Y25]
          Length = 468

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 172/491 (35%), Gaps = 36/491 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL      A +     S+Q   I  NI NA  + Y RR+   + S        VTV   
Sbjct: 1   MSLTYSLGNALSGLAAVSRQTEVISSNISNALTEGYARREVALSASSIGGRGAGVTVDGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                        A  + +     L    A  E+         S    I  L  +L + +
Sbjct: 61  TRAVNAAITADRRAAQTHMSGALALSDGLARLEVAMGSAADAGSIAGRIGALEQALVAAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              S D   +      + VV   N SA +VQ++R DAD +I  +I  L   L+++  +N 
Sbjct: 121 AEPSSDAGLQAAQQALQAVVSTLNASAAKVQQMRVDADADIATQIKALNTSLTQIAALNT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  DA   +DQR +L+ +++ ++ ++ + R+N  + +    G  L +      
Sbjct: 181 QISRALTTGADAAGLMDQRAILIDQVASLVPLTEVPRDNGAVALMAPGGVMLVDNSAATF 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS------NQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +F   ++ T         + GV+V             +  G + A   +RD+V+   Q+ 
Sbjct: 241 SFTHSHTITADMTLENGLLSGVLVDGRPLDASGGMGKLAGGTLGAAFALRDTVLTAAQSG 300

Query: 290 LDEMARVLI--GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           LDE+A  L      S  DP       +               L   +     ++P    +
Sbjct: 301 LDEIAADLALKFQDSANDPSIAGGLGLFTDSGGLVDPSDATGLSARLRLNTLIDPAQGGS 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              LRDG       + +   L  +   +                            A   
Sbjct: 361 AQLLRDGLYGGGTAVGSAVQLNRWSSALGQSSA----------------------LAAGV 398

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +   R  S         +FN +        GV+   E+  L+ +E SY  + K++  
Sbjct: 399 LNDIAAARVSSDREASYQSALFNSLYS-AEAAQGVDTDREMQKLLLIETSYAANAKVLQA 457

Query: 468 TDKMLQTLLEG 478
            D MLQTLLE 
Sbjct: 458 VDGMLQTLLEI 468


>gi|218549190|ref|YP_002382981.1| flagellar hook-associated protein FlgK [Escherichia fergusonii ATCC
           35469]
 gi|218356731|emb|CAQ89359.1| flagellar hook-filament junction protein 1 [Escherichia fergusonii
           ATCC 35469]
          Length = 548

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/549 (12%), Positives = 161/549 (29%), Gaps = 75/549 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + + + +   N+ +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTTRYEQMSKIDNLLSSET--NNVSTSLQGFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  A+ +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++++G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNKVVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +    +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 SSARQLAAVPSHADPSRVTVAYVDATAGEIEIPEKLLTSGTLGGMLTFRSQDLDQSRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+++     ++    G       K L     Q  S+          +   
Sbjct: 299 GQLALAFADAFNKQHQAGFDATGAKGEDFFAIGKPLVLSNTQNNSDAAIKAEVINGSQVL 358

Query: 351 LRDGGSV-SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
             D          W V  L            + N  F    +    T      +    + 
Sbjct: 359 ATDYTITWQGAGKWQVTRLVSNTSFTVEPDAAGNVEFDGLKLTFSGTPKDNNSFTLKPVS 418

Query: 410 WL---------------------------------------EKNRSDSHDLHMKSQVVFN 430
                                                     K    +   +     + +
Sbjct: 419 DAVVNMDVKVKDESQIALAQEAGAGDSDNRNGQKLLDLQSNGKTVGGAKSFNDAYATLVS 478

Query: 431 HI---------------------SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +                     S    +  GVNL EE   L + +Q Y  + +++   +
Sbjct: 479 DVGNKTATLKTSSTTQNNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 538

Query: 470 KMLQTLLEG 478
            +   L+  
Sbjct: 539 TLFDALINI 547


>gi|323976545|gb|EGB71633.1| flagellar hook protein FlgK [Escherichia coli TW10509]
          Length = 547

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 154/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI------------ 278
                     +S   +  +                 +  G +  +L              
Sbjct: 239 STARQLAAIPSSADPSRTTVAYVDGTAGNLEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 279 ------------------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
                              D+     ++        ++ + +    +A  +       + 
Sbjct: 299 GQLALAFAEAFNAQHNKGYDANGKEGEDFFAIGKPAVLQNTNNNGSVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|254445805|ref|ZP_05059281.1| flagellar hook-associated protein FlgK [Verrucomicrobiae bacterium
           DG1235]
 gi|198260113|gb|EDY84421.1| flagellar hook-associated protein FlgK [Verrucomicrobiae bacterium
           DG1235]
          Length = 486

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 173/508 (34%), Gaps = 56/508 (11%)

Query: 1   MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SP 47
           MS   +      A    +       +   N+ N +N +Y R+  +               
Sbjct: 1   MSSSNIFGDLANATKALSAHRFGVTTAGNNLANVNNPDYARQRVLIGEEGMIQTIAGPQG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSS-----------------AIGQQRLLQSFEALKEMM 90
             V VV  +     + D+ +   +S                 ++GQ+          +  
Sbjct: 61  MGVEVVGFQHMRDAVLDREVLRETSLNASLTAQQAALGKAESSLGQEINRSGDSPFIDGA 120

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           +AD   +      ++   ++  S S N   D   ++++  AE + +  N ++     +R 
Sbjct: 121 TADGGGSGGIAETLNNFFNAFHSLSANPGSDAEKESLLQKAEILTEKLNVTSERFSDLRE 180

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGIST 209
               E+E ++ +  + + E+  +N  I    +S    A    DQR  +L+ +SEI+ I T
Sbjct: 181 ALTLEVETDLDSANQMIEEIATLNAEIARAESSHAGQALSLRDQRQAVLRDLSEIMQIKT 240

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
              +++   +      T+    P+     +    TV  + + +     V        V  
Sbjct: 241 ENIDDSAGQIRVYI-PTIGGDSPQLDLVSRGRFQTVDLDDSGVNPVFTVGEDAIQIDVRG 299

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G +   L+ RD  +  +Q  LD++A+ L+   +       +  +                
Sbjct: 300 GSVHGALKSRDGAIAEYQRGLDDLAKELVTQVNGLYNSGVSPNDTNFF------------ 347

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                        ++ +    L    + S     N     G   L     +  + N    
Sbjct: 348 ------SDTSDPSEFTAAGITLASDLTASTLRTSNASTDLGDNSLTLAIAELDDTNQAAL 401

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                  N     + R+ +  L +N +          +VF  + +      GV++ EE++
Sbjct: 402 ------GNRNFGTFYRSIVTDLGENVAAVDSRLEDENIVFELLKQQQDAVSGVSIDEEMT 455

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            ++K ++++  + KLI   D+ML  ++ 
Sbjct: 456 DMMKFQRAFQATGKLIQTIDEMLDVIVN 483


>gi|218703531|ref|YP_002411050.1| lateral flagellar hook associated FlgK-like protein [Escherichia
           coli UMN026]
 gi|293403361|ref|ZP_06647452.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378972|ref|ZP_06988853.1| flagellar hook-associated protein 1 FlgK [Escherichia coli
           FVEC1302]
 gi|300899458|ref|ZP_07117706.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1]
 gi|218430628|emb|CAR11494.1| Lateral flagellar hook associated protein 1 (FlgK-like)
           [Escherichia coli UMN026]
 gi|291429214|gb|EFF02234.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280085|gb|EFI21589.1| flagellar hook-associated protein 1 FlgK [Escherichia coli
           FVEC1302]
 gi|300356937|gb|EFJ72807.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1]
          Length = 458

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  N     Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANTMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|331666552|ref|ZP_08367426.1| flagellar hook-associated protein FlgK [Escherichia coli TA271]
 gi|331065776|gb|EGI37660.1| flagellar hook-associated protein FlgK [Escherichia coli TA271]
          Length = 458

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   V     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYVDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +               + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|315186992|gb|EFU20749.1| flagellar hook-associated protein FlgK [Spirochaeta thermophila DSM
           6578]
          Length = 624

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/425 (14%), Positives = 148/425 (34%), Gaps = 29/425 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S        +      +Q  A++  N+ NA  + Y R+                      
Sbjct: 3   STFMSIEIGKRGLLAHTQGLATVGHNMSNASVEGYSRQRVNFEAMDPLYMPGLNREETPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V++ +       + +  + A ++  G      S+  + E    ++  + S    +
Sbjct: 63  QIGQGVSIQSIERIRDEILEGRIAAQTNVGGYWETRNSYLLMVEKTY-NEPSDVSVRSLL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               D+ +  S +  E      VI+NA+ +V   +     +  IR   ++++++ ++ + 
Sbjct: 122 DAFWDAWQELSIHPDEVAARHAVIENAKALVDGIHGRYHALSSIRKMIEEDVQVTVNEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +++ +  +N+ I    A   + +D +D+RD+L++K++++I I+   R+ ++  ++    
Sbjct: 182 DYIARIAHLNEQIVKVKAMGDNPNDLMDRRDLLVEKLAKLINITVDKRDPDEFTIHVGGR 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +   V      +           N  F   +   S +   +  GK+ ALL++RD  V 
Sbjct: 242 HLVQGKVYHPFILDP-------RPQNEGFSAVLWEGSTEEVRLEGGKLAALLELRDGDVR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
               +LD M   L+   +E    A       G+        + N +              
Sbjct: 295 GEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDGEFDST 354

Query: 345 R----SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   + L     V  + +  +    G   +  +  D+          +G   + + 
Sbjct: 355 YLFRIHGTNVLDPNAQVGIEGVITLSGTEGDVQIAYYPTDTVQDIVNRINTSGAEVSASF 414

Query: 401 LEYAR 405
               R
Sbjct: 415 DRLGR 419



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 96/343 (27%), Gaps = 15/343 (4%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197
             +V+      D      ++ +         +N         +  +  +A    D+    
Sbjct: 290 DGDVRGEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDG 349

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               + +  I      + +  V      TL  T   D+      + TV    N I   G 
Sbjct: 350 EFDSTYLFRIHGTNVLDPNAQVGIEGVITLSGTEG-DVQIAYYPTDTVQDIVNRINTSGA 408

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
            VS++            L ++     P       +     +    +            G 
Sbjct: 409 EVSASFDR---------LGRLVLKATPSGDVAFPDFVIRHVEDSGQFLSGYAGILGGSGP 459

Query: 318 FIADGIKDLDNKLCQGISETICVNP-QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
             A   + +D  L         V P  + S    L          +       G P    
Sbjct: 460 ENAYDWETVDAVLTLRGGAEYGVAPFAHPSGWVVLNPEVERDPASVAAGFGQGGRPAPPG 519

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
               +     +      I   +T  +Y   ++  +      +       +++   + +  
Sbjct: 520 DGSAALAIANLRTEPVMIGRLMTFDDYFAEAVSEIGLKGQQAQIADETQKLIMKDLKDLR 579

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  GVN+ EEL+ +IK +  Y  S + I   + ML  L+  +
Sbjct: 580 ESISGVNIDEELAQMIKFQHGYAASARFISTFNSMLDLLINRM 622


>gi|148980296|ref|ZP_01815983.1| putative flagellar hook-associated protein [Vibrionales bacterium
           SWAT-3]
 gi|145961315|gb|EDK26625.1| putative flagellar hook-associated protein [Vibrionales bacterium
           SWAT-3]
          Length = 459

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/489 (13%), Positives = 146/489 (29%), Gaps = 42/489 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49
           M +    N   +          +  +N  N +   Y R+      S              
Sbjct: 1   MGMT---NIGLSGALANRVALNTTAQNTANVNTPGYSRQIVTMEASLSGNAVNGINLGAG 57

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V              L   + +    +   +  +  E +        S T  ++    
Sbjct: 58  VEVSDILRIADQSSINRLREATESAQYSQSYFNGLSNLENLLG--ADGLSLTQGMNGFFA 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +++  S         + V+ NA+ + Q FN+ + ++ +  A   +     ++++   L  
Sbjct: 116 AIDEASVTPESVAFRQQVLTNADALAQQFNSVSAQLSQQEAAQSERYGALVTHVNSQLES 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  ++             D  D  L ++S+ + +  I  +N  + + T +   L  
Sbjct: 176 IASLNQKLQEDALLGKSVGGLQDAMDKHLNELSKSLDVQVIY-SNGGVELSTPNVQPLVI 234

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                     ++S    S    I    +    +       G++ AL  ++ +     +  
Sbjct: 235 GGYAASLARDLSSGDPYSTDLNITFQSMTTPVDAS---LGGELGALEALKTNQYEPIKTL 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L ++A+ L    +       +   V G  +       +             +  + S+ +
Sbjct: 292 LADLAKGLADGVNSALNSGFDLNGVAGQNLFTYTLGSEALSLAIDPSLTAQDLAFSSSAT 351

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                              AG  D++               VAG     T        +G
Sbjct: 352 L------------------AGNGDVLKDLSMLSQTPLTNGSVAG----ETPYSAYSGLLG 389

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +      +      +QV       +  +   VN  EE + ++    +Y  + K+I   +
Sbjct: 390 DIGIFTRQAQSEATAAQVSMEDAQVARDSVSAVNSDEEAANMLLYLNAYEANMKIISTAN 449

Query: 470 KMLQTLLEG 478
           +M QTLL  
Sbjct: 450 QMFQTLLRA 458


>gi|312115279|ref|YP_004012875.1| flagellar hook-associated protein FlgK [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220408|gb|ADP71776.1| flagellar hook-associated protein FlgK [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 489

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 145/489 (29%), Positives = 232/489 (47%), Gaps = 10/489 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL A  + A    + AS Q A + RN+ N   +   R+           +VV+    + 
Sbjct: 1   MSLTAALDTATAGISVASSQIAVLSRNVANQSTEGASRKLANVATINGLPSVVSITRVSN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDSLESYSKNL 118
               K L A ++   +   +    A  +            SPT  IS L D L +Y+ + 
Sbjct: 61  AAALKSLLAANADDARDGAVSDALARLQSTVGATSTDDTTSPTALISALSDDLSTYAASP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                    +  A ++    N ++  VQ++RADAD  I   +S +   L++   VN+ I 
Sbjct: 121 ESTAAASAAVQAASDLSDALNAASDVVQQVRADADSAISDSVSTINDLLAQFQTVNETIV 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +  D  D LDQRD +LQ +S  IGIST+ R+NNDM +YT  G TLF+   R ++FE
Sbjct: 181 KGTVTGADTTDALDQRDAILQSLSAEIGISTVTRSNNDMAIYTDSGVTLFDKAARSVSFE 240

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSA-VPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
             N++  +++ N +++DGV V+++  S  +  GK+  L+++RD +   +Q+QLDE+AR L
Sbjct: 241 ATNAFAASTQGNAVYVDGVPVTASGASYEIKSGKLAGLVEVRDDLAVTYQDQLDEIARGL 300

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIK---DLDNKLCQGISETICVNPQYRSNPSFLRDG 354
           I +F E D  A  + +       D           + +G++  I +     + P+ LRDG
Sbjct: 301 ITAFQETDQSASGTGSAQAGLFTDSGSLVVPTSGTVSEGLAARISLASSVIATPTLLRDG 360

Query: 355 GSVSKKFL----WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           G  +              +GY D ++   DS +    FD  AG  T+++L +YA  S  W
Sbjct: 361 GISTNGAAPYVYNPSPGQSGYTDRLDGLVDSLSSKMTFDTSAGAGTSISLSDYAAASASW 420

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L      +      S  V +  + + SN  GVNL  ELS ++ +EQSY  S KL+   D+
Sbjct: 421 LGVKSQSASSTAAYSATVKSTAATALSNATGVNLDSELSKMLALEQSYAASAKLVSAVDQ 480

Query: 471 MLQTLLEGV 479
           M   LL  +
Sbjct: 481 MFSDLLNAI 489


>gi|323191378|gb|EFZ76640.1| flagellar hook-associated protein FlgK [Escherichia coli RN587/1]
          Length = 458

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYNTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    +   P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNANGTPTMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|77165832|ref|YP_344357.1| hypothetical protein Noc_2369 [Nitrosococcus oceani ATCC 19707]
 gi|254433787|ref|ZP_05047295.1| flagellar hook-associated protein FlgK [Nitrosococcus oceani AFC27]
 gi|76884146|gb|ABA58827.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090120|gb|EDZ67391.1| flagellar hook-associated protein FlgK [Nitrosococcus oceani AFC27]
          Length = 647

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 135/421 (32%), Gaps = 17/421 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M+   +     +    A +  A+   NI N +   + R+ T                  V
Sbjct: 1   MASSDLLGIGASGLLAAQRALATTSHNIANVNTPGFSRQRTELAARLPEFTGQGFIGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T R    +   +     +S   Q ++     A  + + AD   +   +    +  ++
Sbjct: 61  DVTTVRRAYDSFLTEQARYSTSEYAQSKVFHDLAAQVDNLFAD--SDTGLSASSQRFFNA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  + + S     + ++          ++    + ++  D +  +   ++ +    S +
Sbjct: 119 TQELANDPSSSAARQVLLAEGGAFAARVHSLGDRLGELDEDVNTRLRDTVAEVNTLSSSI 178

Query: 171 TVVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N  I+      +    +D LDQRD L+Q +S+   ++ + +++  + V+   G +L 
Sbjct: 179 AGLNQQIRDLRGQNNNQPPNDLLDQRDQLIQDLSQKAAVTVLPQDDGSLNVFIGKGQSLV 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                       N Y  +         G V   +   ++  G++ ALL  RD V+   +N
Sbjct: 239 TGDHSHSLTTLANPYEASRLEVGYAAKGGVAPISD--SIQGGELGALLSFRDEVLSSSRN 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L ++A  +  SF+E+  +  + +   G      I             T     +   N 
Sbjct: 297 ALGQLAVGVAQSFNEQHRLGVDLQGELGGDFFAAIDSNTAVSLPRADNTGDGVIEIAIND 356

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLIN-HYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           +                  L    D                D +    T+ ++       
Sbjct: 357 ASKLTDSDYRLDRNGAGFTLTRLSDNQAFSLSTFPGSAETVDGLTLNLTSGSINGGDSYL 416

Query: 408 I 408
           I
Sbjct: 417 I 417



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/390 (13%), Positives = 102/390 (26%), Gaps = 11/390 (2%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                 ++S          S      + S + LG+  +  A+   +          ++  
Sbjct: 266 GGVAPISDSIQGGELGALLSFRDEVLSSSRNALGQLAVGVAQSFNEQHRLGVDLQGELGG 325

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           D    I+   +               I    ASK    D+   R+     ++ +      
Sbjct: 326 DFFAAIDSNTAVSLPRADNTGDGVIEIAINDASKLTDSDYRLDRNGAGFTLTRLSDNQAF 385

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             +       T DG TL  T       +        + +    +    + ++       G
Sbjct: 386 SLSTFPGSAETVDGLTLNLTSGSINGGDSYLIQPTRAAAQQFGV----MLTDSARIAAAG 441

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            I+    + +                L    + +  +  ++              LD   
Sbjct: 442 PIRTEANLGNRGTGQVSAAAVTATAGLPLPSNGEVTLTYDAAARQFNVSGGPGGTLDFDP 501

Query: 331 CQGISETICVNPQYRS-NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               +      P     N +            L N     G             K    D
Sbjct: 502 ATESNGKEFHLPSVGGLNFTVSGVPADGDTFMLQNNTGGVGDNRNALSLAGLQTKPVFQD 561

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T  E     +  +      +       + + +    +     GVNL+EE +
Sbjct: 562 ------GTTTYQEQYGRLVADVGARTRQAEANQDTHKTLLDQAVAAREGVSGVNLEEEAA 615

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            LI+ +Q++  + ++I   D M QTLL  V
Sbjct: 616 NLIRFQQAFQAAARVISTADTMFQTLLGAV 645


>gi|170288661|ref|YP_001738899.1| flagellar hook-associated protein FlgK [Thermotoga sp. RQ2]
 gi|170176164|gb|ACB09216.1| flagellar hook-associated protein FlgK [Thermotoga sp. RQ2]
          Length = 858

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/446 (13%), Positives = 134/446 (30%), Gaps = 30/446 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+  + N A    +        +  NI NA    Y R+  +                  
Sbjct: 4   MSMFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   V T         D      ++       + S     E + A +   +     
Sbjct: 64  LQMGTGAKVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGIRSL 122

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    ++ +    + S       V+  A+++V         ++++R D D EI   +S +
Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDDEIVQRVSEI 182

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +  L  +N+ I+         +D LD+RD +L ++S +  I+     +  + +   +
Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L  +  R++   +          + +F+    +          GK+KAL+ +RDS +
Sbjct: 243 QIVLNGSTYRELRALER---PYGKGYHELFVGNSQLIL------SDGKLKALMDLRDSSI 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  +LDE    +  S +        S  V          +  +              +
Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGSRKLE 353

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                +      + S+  +   +  +    ++  +    +          I   V     
Sbjct: 354 MGPYHTVTGIHSASSQVEIEGRRFNSDD--IVLSFGGGSSNVLNVSAGTTIGDLVGSWNL 411

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429
              S+  +  +          S    
Sbjct: 412 LGTSL-RVGSHAGGYRLYLEDSTGSL 436



 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 128/467 (27%), Gaps = 38/467 (8%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS---ADDHYNNSPTH 102
                T+         +   +     +   +  L  S  +L+  +     D         
Sbjct: 396 VSAGTTIGDLVGSWNLLGTSLRVGSHAGGYRLYLEDSTGSLRNKLFLSLGDSLSQMGFDT 455

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                    ES    LS  +    V    E+  +   T + ++      ++ E       
Sbjct: 456 ETKGYITIKESDLSGLSSGVYNINVEYTLEDGTRQTETISVDLSSGVNLSNIEAS----- 510

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +         +               D     D    K+       T             
Sbjct: 511 INSSSHLRAQIYADPSTGENMLVIVPDEQLSFDPSAVKVLSDDDFFTKSNAFVRNYEVLE 570

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ----- 277
              TL         F+    +T+T  S  I ID  V +          K   +L      
Sbjct: 571 YKDTLENIFYGQTGFDPTRPFTITINSTDIEIDPAVDTLETLVEKINEKNTGVLADLTPH 630

Query: 278 ----IRDSVVPIFQNQLDEM--ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
                R S +  F  ++ E+   +    +    DP    +            K  D    
Sbjct: 631 HSLVFRASSLYDFDLRMMEIKGPQGFFEAVGFIDPDGDPTTFDWSSSFTLVSKSDDFTTL 690

Query: 332 ---QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +++ +  +      P  + +   VS     N  NLA          D    +   
Sbjct: 691 SERFKVADILTFDRALYDEPLNIVNQFEVSSSLATNPANLAVDVGYALENSDWNATSIKP 750

Query: 389 DPVAG----------------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              A                  N   +  E+    I  L      + +L   ++++   I
Sbjct: 751 SGGANPELLETIQNLYTKKMLSNGKESFYEFFGGVISELGVEAETASNLKNNTEILRQEI 810

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +     GV+L EE++ +I+ + +++ + K+I   D+M+QT++  V
Sbjct: 811 DNAREEVKGVSLDEEMANMIEYQHAFSAAAKVITAVDQMIQTVINMV 857


>gi|301645421|ref|ZP_07245362.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1]
 gi|307136864|ref|ZP_07496220.1| flagellar hook-associated protein FlgK [Escherichia coli H736]
 gi|331640719|ref|ZP_08341866.1| flagellar hook-associated protein FlgK [Escherichia coli H736]
 gi|301076305|gb|EFK91111.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1]
 gi|315616821|gb|EFU97438.1| flagellar hook-associated protein FlgK [Escherichia coli 3431]
 gi|331040093|gb|EGI12301.1| flagellar hook-associated protein FlgK [Escherichia coli H736]
          Length = 458

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/484 (13%), Positives = 161/484 (33%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMITGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   V     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYVDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMEVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++  P        +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTPTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|222084886|ref|YP_002543415.1| flagellar hook-associated protein [Agrobacterium radiobacter K84]
 gi|221722334|gb|ACM25490.1| flagellar hook-associated protein [Agrobacterium radiobacter K84]
          Length = 491

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 159/489 (32%), Positives = 260/489 (53%), Gaps = 11/489 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N AQ I NN+  Q + +  NI NA N +Y RR  M T       VV     N+
Sbjct: 1   MSLTTALNNAQAIFNNSGTQSSVVSNNIANAGNTDYSRRQAMLTTDMSGAQVVKIARANE 60

Query: 61  NMFDKV-LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
               K  L + SS   QQ LL+++ +L+      +    +P  Y+S L+ ++++Y+ + S
Sbjct: 61  PALQKTFLSSTSSDAAQQSLLKAYTSLQSATLGGNDNEVAPATYLSNLQTAMQTYASSPS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                ++ ++ A+ +    N +   VQ +R DADK+I  ++  L   L++    NDA+K 
Sbjct: 121 SSTAAQSAVNAAQSLATALNNATTAVQSVRTDADKQIASDVDTLNGLLNQFQTANDAVKS 180

Query: 180 KTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            TA+         D LDQRD +L++IS+I+G++T+ R+NND+ +YT+ G TLFET+PR +
Sbjct: 181 ATAASSPTSTTLSDALDQRDSILKQISQIVGVTTVTRDNNDVALYTTGGATLFETIPRSV 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMA 294
            F    SYT +   N ++IDGV +++ QG++   +G ++A LQ+RD V P +Q QLDE+A
Sbjct: 241 TFTPTTSYTASISGNNVYIDGVALTAGQGASTTAQGSLQASLQVRDDVAPTYQKQLDEIA 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-----PQYRSNPS 349
           R L+ +F+E +     +      +    + D    +                     +P+
Sbjct: 301 RGLVTTFAETNQTDSTTAPGLFTWSGGTVPDSATVVTGMAGSIAVNPALLTTSTQTGDPT 360

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            LRDGG     ++ N    +GY D ++ Y    +    FDP AG + + +L++YA +SIG
Sbjct: 361 LLRDGGINGSDYVVNTTGASGYSDQLDAYITGMSTKMDFDPTAGSDASASLMDYASSSIG 420

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           WLE  RS +      +    +  S +YSN  GVNL EEL+ ++ +EQSY    K++   +
Sbjct: 421 WLEGQRSTATTAAENTSAALSRSSTAYSNETGVNLDEELTLMMDIEQSYKAGTKILNAVN 480

Query: 470 KMLQTLLEG 478
           +MLQ++L+ 
Sbjct: 481 EMLQSVLDI 489


>gi|293408373|ref|ZP_06652212.1| flagellar hook-associated protein FlgK [Escherichia coli B354]
 gi|291471551|gb|EFF14034.1| flagellar hook-associated protein FlgK [Escherichia coli B354]
          Length = 458

 Score =  172 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 159/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLTQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLQNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTASMTLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 SQFADAVNNQQAQGYDLNGNPGEPLFIYDASNADGPLTVNPDITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|296103605|ref|YP_003613751.1| flagellar hook-associated protein 1 [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058064|gb|ADF62802.1| flagellar hook-associated protein 1 [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 545

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/546 (13%), Positives = 155/546 (28%), Gaps = 72/546 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  +FN A+   + A         N+ N  +  Y RR  +                    
Sbjct: 1   MNNLFNLARGGLSVAQAALRVTGDNLTNGMSGTYSRRSLIIGELGGMTTGQGFFGYGARA 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +  L    S      L    E L ++ +     +++ +  ++ +  ++ 
Sbjct: 61  GGVERAYDAFANNELR--GSLSHYASLNGRMEQLSDIDNMLADESDNVSVSLNDMFKAMA 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S + ++      V +    +   FN SA+ +  +    + +IE    ++  +  +L  
Sbjct: 119 TLSGDAADGPARAAVFNALGTLANRFNASAKRLTALEKSTNTQIEQSAKDINSYTQQLAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETV 231
           VN  ++    +     D LDQRD LL+K+SE IGI+         + V  SDG  L    
Sbjct: 179 VNKQLERAQGNGAPPADLLDQRDALLEKMSEHIGITVTEDKTTGRVDVLLSDGRPLVSRD 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +                  S    S++ KG++  L + R+  + I + +LD
Sbjct: 239 RAYKLQTSPSDADPNKTIVSYVDANENASPLDESSITKGRLGGLFKFRNEDLTIARQELD 298

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIAD-----------------------GIKDLDN 328
           ++A  +    +E+       +   G  +                                
Sbjct: 299 QIAFTMANRMNEQHAEGYTPDGDKGGDLFSLADIKAYANAKNTGTGKLGAINVTNYTDVK 358

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN------------ 376
                ++                     V     ++   +       +            
Sbjct: 359 SENYTVTSDGAGGWTVTGEDGRTVPATLVGDNLTFDGIEIDVSGGGFDDGDSFTLNPIAG 418

Query: 377 -------HYCDSFNKNFIFDPVAGINTNVTLL-----------------EYARNSIGWLE 412
                      +       D   G   N  L                  E   + +G + 
Sbjct: 419 AAEGMARSLGSAQEFAAAGDKDGGPGDNTNLEEMLKIQDQKLIGDNTLTEAYASLVGTIG 478

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                     + ++       ++     GVN+ EE   L   +Q YN + +L+     M 
Sbjct: 479 DRARGVKSALVSAETDLRTKYDTKQALSGVNMDEEYINLDMFKQYYNANAQLLKTATDMF 538

Query: 473 QTLLEG 478
             LL  
Sbjct: 539 DALLSI 544


>gi|148269976|ref|YP_001244436.1| flagellar hook-associated protein FlgK [Thermotoga petrophila
           RKU-1]
 gi|147735520|gb|ABQ46860.1| flagellar hook-associated protein FlgK [Thermotoga petrophila
           RKU-1]
          Length = 858

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/446 (13%), Positives = 134/446 (30%), Gaps = 30/446 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+  + N A    +        +  NI NA    Y R+  +                  
Sbjct: 4   MSMFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   V T         D      ++       + S     E + A +   +     
Sbjct: 64  LQMGTGAKVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGVRSL 122

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    ++ +    + S       V+  A+++V         ++++R D D EI   +S +
Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDDEIVQRVSEI 182

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +  L  +N+ I+         +D LD+RD +L ++S +  I+     +  + +   +
Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L  +  R++   +          + +F+    +          GK+KAL+ +RDS +
Sbjct: 243 QIVLNGSTYREL---RALERPYGKGYHELFVGNSQLIL------SDGKLKALMDLRDSSI 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  +LDE    +  S +        S  V          +  +              +
Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGSRKLE 353

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                +      + S+  +   +  +    ++  +    +          I   V     
Sbjct: 354 MGPYHTVTGIHSASSQVEIEGRRFNSDD--IVLSFGGGSSNVLNVSAGTTIGDLVGSWNL 411

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429
              S+  +  +          S    
Sbjct: 412 LGTSL-RVGSHAGGYRLYLEDSTGSL 436



 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 128/467 (27%), Gaps = 38/467 (8%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS---ADDHYNNSPTH 102
                T+         +   +     +   +  L  S  +L+  +     D         
Sbjct: 396 VSAGTTIGDLVGSWNLLGTSLRVGSHAGGYRLYLEDSTGSLRNKLFLSLGDSLSQMGFDT 455

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                    ES    LS  +    V    E+  +   T + ++      ++ E       
Sbjct: 456 ETKGYITIKESDLSGLSSGVYNINVEYTLEDGTRQTETISVDLSSGVNLSNIEAS----- 510

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +         +               D     D    K+       T             
Sbjct: 511 INSSSHLRAQIYADPSTGENMLVIVPDEQLNFDPSAVKVLSDDDFFTESNAFVRNYEVLK 570

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ----- 277
              TL         F+    +T+T  S  I ID  V +          K   +L      
Sbjct: 571 YKDTLENIFYGQTGFDPTRPFTITINSTDIEIDPAVDTLETLVEKINEKNTGVLADLTPH 630

Query: 278 ----IRDSVVPIFQNQLDEM--ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
                R S +  F  ++ E+   +    +    DP    +            K  D    
Sbjct: 631 HSLVFRASSLYDFDLRMMEIKGPQGFFEAVGFVDPDGDPNTFDWSSSFTLVSKSDDFTTL 690

Query: 332 ---QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +++ +  +      P  + +   VS     N  NLA          D    +   
Sbjct: 691 SERFKVADILTFDRAPYDEPLNIVNQFEVSSSLAANPANLAVDVGYALENSDWNATSIKP 750

Query: 389 DPVAG----------------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              A                  N   +  E+    +  L      + +L   ++++   I
Sbjct: 751 SGGANPELLETIQNLYTRKILSNGKESFYEFFGGVVSELGVEAETASNLKNNTEILRQEI 810

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +     GV+L EE++ +IK + +++ + K+I   D+M+QT++  V
Sbjct: 811 DNAREEVKGVSLDEEMANMIKYQHAFSAAAKVITAVDQMIQTVINMV 857


>gi|161594054|ref|NP_901379.2| flagellar hook-associated protein FlgK [Chromobacterium violaceum
           ATCC 12472]
          Length = 455

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/483 (14%), Positives = 152/483 (31%), Gaps = 41/483 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56
            N A +    A     +  +NI N     Y R+  +             +   V V   R
Sbjct: 4   INNALSGAQAAQVALNTASQNIANQQTPGYSRQGVVLATQAPGAGDPLSAGYGVNVSNVR 63

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             + +  + +    +S +G +   Q +    E +       +S +    +   +L + S 
Sbjct: 64  RFSDDYKNLLQWQAASNVGSRAAAQPYFTQLEKVMG--SKGSSLSDGFDQFFAALNAASL 121

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +   VI +A+ + Q FN     +    A   ++    ++ +    + L  +N+ 
Sbjct: 122 D--SNTMRDQVIRSADALAQRFNNLDGVLTSQLAAISEQRNATLTQINSATANLAALNEK 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +    A   +     D+RD  +  +S +I +  + + +    +   +G  L         
Sbjct: 180 LMSAKAQGINTSGLEDERDRQVDALSSLIEVRVVAQPDGSKSISLKNGLPLVTGDSAATL 239

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
             +            + +               G++  L +     +   Q Q+  +A  
Sbjct: 240 SSEAQPDGSQQ----LKLAFGTEKYAMPGGDLGGQLGGLNRFETENLRPVQAQVRTLAGE 295

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L    +++     +    PG  +                               L     
Sbjct: 296 LATRVNDQLAKGYDMNGQPGKPLFQYD---------------------AGAAHGLLQTTG 334

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           +    L    + A   +  N       K   F        NVTL +     IG L  +  
Sbjct: 335 ILSAELGFSADPAKPGNNDNLREVLKVKQQAFPLAG--IGNVTLGDAYSQMIGHLAISSQ 392

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      + V+     +++ +T GV   EE   LI+ ++ Y  + K+I   +++ ++ L
Sbjct: 393 QNSSSLDTANVIRAEAEKNWQSTSGVQRDEEAVSLIEYQKMYQANMKVIAVANQLFESTL 452

Query: 477 EGV 479
             +
Sbjct: 453 AIL 455


>gi|116248739|ref|YP_764580.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253389|emb|CAK11777.1| putative flagellar hook-associated protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 486

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 255/485 (52%), Gaps = 8/485 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N  Q+I N   QQ + I  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSALNNVQSIFNTTGQQSSVISTNIANVGNSDYVRREASVTTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     ++    Q+ L +     + +   + Y  SP+ Y++  + +L+++  + S 
Sbjct: 61  TALLAQYLQTNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLTAFQQALQTFGTSPSS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               ++ +  A+++  + NT++  VQ IRA+AD EI  ++S L   LS+    N+A+K  
Sbjct: 121 TTAAQSAVTAAQDLANSLNTASDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T++  D    LD+R+ LL++IS I+G+++ VR+NNDM +YTSDGT LFET+PR + F   
Sbjct: 181 TSTGTDTSSALDEREKLLKQISSIVGVTSTVRDNNDMALYTSDGTVLFETIPRTVTFAPT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y   +E N I+IDGV + + +GS     G ++ALLQ+RD + P FQ QLDE+A+ L+ 
Sbjct: 241 ATYVAGTEGNSIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQAQLDEIAKSLVQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353
            FSE D              +                   IS  + V      + + LRD
Sbjct: 301 IFSETDGSTSAPGLFVWTTASGATGATPAASDDATGIASTISVNLAVVTSEGGDATKLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            GS+S     N    +G+ D ++   ++  +   F   AG++T+ +L +YA  SIGWLE+
Sbjct: 361 -GSISGITDLNTSGDSGFSDNLDALYEALTEQRSFSSDAGLSTSQSLTDYASASIGWLEQ 419

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            RSD+      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++   D+M Q
Sbjct: 420 YRSDATSASETTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQ 479

Query: 474 TLLEG 478
           +LL+ 
Sbjct: 480 SLLDI 484


>gi|146278770|ref|YP_001168929.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557011|gb|ABP71624.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 476

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/486 (19%), Positives = 178/486 (36%), Gaps = 18/486 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MS+    + A +     S+   +   NI NA  + + RR+   +          V VV  
Sbjct: 1   MSITTALSSALSGLTVTSRGVETAANNIANALTEGFARRELEVSARAYGGEGRGVRVVGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           +A G +    +F      +  D     S    I+ L  +L S +
Sbjct: 61  NRIIDMTLVGDRRLADAATGDRNTRSAFYESIAKVVGDTA-EGSLLSRITDLSAALASAA 119

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                 +  + V+D A+ +V   N ++  V   R  AD  I  ++  L   L  +  +N 
Sbjct: 120 SRPESTVRLQDVLDTAQALVSGLNAASDAVLTARRGADASIADQVDQLNAGLESVRDLNL 179

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  D+    D+R  ++  ++ I+ +  I R N  + ++T+ G  L +    +I
Sbjct: 180 RITRLRVTGRDSSALEDERQRVVDSMATIVPLREIERENGQIALFTTGGAALLDGRVAEI 239

Query: 236 NFEKMNS-YTVTSESNPIFIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            F       + +S    + +DG  +S       +  G + A   +RD++ P  Q +LD +
Sbjct: 240 GFTPTPGLVSASSSLGSLTMDGRPISVPGDPGLMAGGSLSAAFAVRDTLAPNEQQRLDAL 299

Query: 294 ARVLIGSFSEKDPI-AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           AR LI  F+  D   +     +             + L   IS    V+P+      +LR
Sbjct: 300 ARDLIERFTAADSSLSAGDAGLFTDEGLAFDAANASGLAGRISVNGKVDPERGGALRYLR 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           DG   +     +          ++          +    A I  + +L   A   +  L 
Sbjct: 360 DGLQSAAGSTGDGTLFNAMSAALDR--------RVPCSAADIEGSFSLAGLATEIVSGLS 411

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +   +      +    + +        GV+  +EL  L+ +E++Y  + K++   D +L
Sbjct: 412 SSLLSADQEASFASARRDELQVLVL-GDGVDTDKELEQLLLLERAYAANAKVVTACDALL 470

Query: 473 QTLLEG 478
           Q LLE 
Sbjct: 471 QYLLEM 476


>gi|154250318|ref|YP_001411143.1| flagellar hook-associated protein FlgK [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154254|gb|ABS61486.1| flagellar hook-associated protein FlgK [Fervidobacterium nodosum
           Rt17-B1]
          Length = 847

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 121/406 (29%), Gaps = 27/406 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           SL    N        +      +  NI NA+   + R+                      
Sbjct: 5   SLFGTLNTGLLGVYASKLAMNVVAHNIANANTPGFSRQRPELLTMPPIPITSLTQPAVPL 64

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   +       D      ++       + S     E + A +       +  
Sbjct: 65  QIGTGVYVRDIKRVRDAFLDIQYRQTNNKYNYWDTITSNLHFVEQLFA-EPSEAGIRYLF 123

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                 +E    + +     + ++   EE+VQ+       ++++R D D EI      + 
Sbjct: 124 DSFWSGIEEVITDPTNTAAKRGLVSRTEELVQHMQDLYTRLEQLRTDIDNEIAQRTQQIN 183

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             +  L  +N  ++   + K+  +D LD+RD +L ++S++  I         + +   + 
Sbjct: 184 AMVKRLADINAKVRTAVSLKYTPNDLLDERDRILDELSDLADIYYYEDAAGQITLRLGNQ 243

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L      D+   +        E           + N   ++  GK+K+L  +RD V+ 
Sbjct: 244 IVLTGQNVVDLRALERPFGKGFKEI---------FAGNSIVSINDGKLKSLFDLRDEVLV 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+LDE A  L   F+       N +            + +      +          
Sbjct: 295 RYMNRLDEFALSLSDEFNLIHQDGFNGDGSVTGLKFFNDIEAERIKDSVLYRLAGAKRVE 354

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               + +       +      K       ++     +   +   +P
Sbjct: 355 NGPINRISGMSDRIEISDITTKPFIEKGAIVFFNGTNKVFSANVNP 400



 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 41/92 (44%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
           + + +     +   +  EY  + +  L      +  +   + ++   I        GV+L
Sbjct: 748 SALRNKKLLNDGLESFNEYLGSVVAELGVESETAMKIKSNTDLMKKEIDGERERVKGVSL 807

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            EE++ +IK +Q++N + +++   D M+  ++
Sbjct: 808 DEEMANMIKYQQAFNAAARVMTAVDDMISRVI 839


>gi|260853472|ref|YP_003227363.1| putative lateral flagellar hook-filament junction protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257752121|dbj|BAI23623.1| predicted lateral flagellar hook-filament junction protein
           [Escherichia coli O26:H11 str. 11368]
 gi|323158097|gb|EFZ44196.1| flagellar hook-associated protein FlgK [Escherichia coli EPECa14]
          Length = 458

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/484 (13%), Positives = 158/484 (32%), Gaps = 39/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q   +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGDLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S ++ +   + +  +  V   +G  L       
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDDQGNYNVTLKNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +    ++           +++  +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +               + S+P      
Sbjct: 295 SQFADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +    +   +      +     +VT+ +   + I  +   
Sbjct: 349 ------------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIY 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 452

Query: 475 LLEG 478
           +LE 
Sbjct: 453 VLEM 456


>gi|307718454|ref|YP_003873986.1| flagellar hook-associated protein [Spirochaeta thermophila DSM
           6192]
 gi|306532179|gb|ADN01713.1| flagellar hook-associated protein [Spirochaeta thermophila DSM
           6192]
          Length = 624

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 146/425 (34%), Gaps = 29/425 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S        +      +Q  A++  N+ NA  + Y R+                      
Sbjct: 3   STFMSIEIGKRGLLAHTQGLATVGHNMSNASVEGYSRQRVNLEAMDPLYMPGLNREETPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V++ +       + +  + A ++  G      S+  + E    ++  + S    +
Sbjct: 63  QIGQGVSIQSIERIRDEILEGRIVAQTNVGGYWETRNSYLLMVEKTY-NEPSDVSVRSLL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               D+ +  S +  E      VI+NA+ +V   +   R +  IR   +++++  +  + 
Sbjct: 122 DAFWDAWQELSIHPDEMAARHAVIENAKALVDGIHERYRALSSIRKMIEEDVQATVKEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +++ +  +N+ I    A   + +D +D+RD+L++K++++I ++   R+ ++  ++    
Sbjct: 182 DYIARIAHLNEQIVKVKAMGDNPNDLMDRRDLLVEKLAKLINVTVDTRDPDEFTIHVGGR 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +   V      +           N  F   +   S +   +  GK+ ALL++RD  V 
Sbjct: 242 HLVQGKVYHPFALDP-------RPQNEGFSAVLWEGSTEEVRLEGGKLAALLELRDGDVR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
               +LD M   L+   +E    A       G+        + N +              
Sbjct: 295 GEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDGEFDST 354

Query: 345 R----SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   + L     V  + +  +        +  +  D+          +G   + + 
Sbjct: 355 YLFRIHGTNPLDPNAQVGIEGVITLSGAEEDVQIAYYPTDTVQDIVNRINTSGAEVSASF 414

Query: 401 LEYAR 405
               R
Sbjct: 415 DRLGR 419



 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 100/343 (29%), Gaps = 15/343 (4%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197
             +V+      D      ++ +         +N         +  +  +A    D+    
Sbjct: 290 DGDVRGEIQKLDTMTVNLVNLVNEVHRNAYGLNGQTGVDFFVEHPAVLNAVGNYDRNGDG 349

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               + +  I      + +  V      TL      + + +     T T +     I+  
Sbjct: 350 EFDSTYLFRIHGTNPLDPNAQVGIEGVITLSG---AEEDVQIAYYPTDTVQDIVNRINTS 406

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
               +         +       D   P F  +  E +   +  ++         EN    
Sbjct: 407 GAEVSASFDRLGRLVLKATPSEDVAFPDFVIRHVEDSGQFLSGYAGI-LAGSGPENAYDW 465

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV-KNLAGYPDLIN 376
              DG+  L      G++     +     NP   RD  SV+  F         G      
Sbjct: 466 ETVDGVLTLRGGAEYGVAPFAHPSGWVVLNPEVERDPASVAAGFGQEGRPAPPGDGSAAL 525

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
              +   +         I   +T  +Y   ++  +      +       +++   + +  
Sbjct: 526 AVANLRTEPV------MIGRLMTFDDYFAEAVSEIGLKGQQAQIADETQKLIMKDLKDLR 579

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  GVN+ EEL+ +IK +  Y  S + I   + ML  L+  +
Sbjct: 580 ESISGVNIDEELAQMIKFQHGYAASARFITTFNSMLDLLINRM 622


>gi|288960285|ref|YP_003450625.1| flagellar hook-associated protein 1 [Azospirillum sp. B510]
 gi|288912593|dbj|BAI74081.1| flagellar hook-associated protein 1 [Azospirillum sp. B510]
          Length = 469

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/481 (13%), Positives = 155/481 (32%), Gaps = 13/481 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-ISPENVTVVTQRSEN 59
           MSL A  N A             +  NI  A++ N  R     +  +   V   T R E 
Sbjct: 1   MSLFAALNSATAGLRTVQTSVKLVSDNIAQANDPNRTRHTAQQSVDASGQVISTTYRREV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  +   ++  G  ++  ++      +    +       Y +K + ++++ S +  
Sbjct: 61  DTALMGQVMDLTARDGGSQVTSTYMQQLGDLMRTTNGTPLINDYANKFQAAIKTLSTSPE 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           ++     ++  AE   +     +  V+++  +   +I   +  +   L ++  +N+    
Sbjct: 121 DETAQYQLVQTAESFSREIRRVSEGVEQLDRNIKDDIGTSVDKVNDLLKQINQINNDSVS 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                  A+   D+RD L++++S  +GI T+ R +  + ++T  G  L +    ++ ++ 
Sbjct: 181 LQGQGSAANAVADKRDGLVRELSGYMGIRTVERPDGRLAIFTPSGLALVDGQQANLTYD- 239

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                       I +      ++  + +  GK+ AL+Q+R              +     
Sbjct: 240 ---------GGNINLQVGNQVTSINNHLATGKLGALIQMRKD--GSTTEPPTPASGDPTT 288

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
               K     +             +          +       Q     +          
Sbjct: 289 EIIRKLRSQLDEYAKAFTGPTKPGEPTSFADAYDDASPAAAGEQPNQFFTGNDRFTIAIN 348

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             L +  N      + +           F        + T         G        + 
Sbjct: 349 PKLLDNTNKIKQSAIDDMVTAINAPGRSFSADGLQMKDTTYSAMGSAITGTWMAAAKTAS 408

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                ++     +SE Y +  GVN+ EE++ L +++ SY  S +++   + M   L   V
Sbjct: 409 TTSESNKASMQLLSERYQSQTGVNIDEEIAQLQQLQTSYQASARVMQVANSMFDALEAVV 468

Query: 480 K 480
           +
Sbjct: 469 R 469


>gi|257457497|ref|ZP_05622665.1| flagellar hook-associated protein FlgK [Treponema vincentii ATCC
           35580]
 gi|257445120|gb|EEV20195.1| flagellar hook-associated protein FlgK [Treponema vincentii ATCC
           35580]
          Length = 625

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 127/353 (35%), Gaps = 24/353 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS  A     +       Q   +   NI N+  + Y R+                     
Sbjct: 1   MSTFASIELGKRSLFAHQQSIQTAGHNISNSSTEGYTRQRVQLDSYEPLYRPDLSRAETP 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               + V V +       + D+ + A +   G      S+  + E +  ++  + S    
Sbjct: 61  GQIGQGVAVSSITRLRDELLDQRIVAQTDQQGYWETRDSYIYMLEQLY-NEPEDTSVRTR 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           + +  DS +  S           V   A+ +  + +   R +Q IR   + +IE  +  +
Sbjct: 120 LDQFWDSWQELSVYPESTAARSAVATRAKTLTDSVHHQYRGLQGIRDMINGDIEARVKQV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
             F  ++  +N+ I    A   + +D +D+RDVL +K++++I IS    + ++  +  SD
Sbjct: 180 NSFTRQIAALNEEIVKVKAMGDNPNDLMDKRDVLTEKLADLISISVEKVDADESYIIYSD 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G  L +                +   N  + + V   S   +    G++ AL+++RD  V
Sbjct: 240 GMELVQGR------TFRTFGLKSGTGNEGYANVVWEDSGNLAHFGGGRLAALIELRDGDV 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
               N+LD MA   +   ++    A       G+        ++N +      
Sbjct: 294 RDEINKLDTMAMNFVDLVNDIHRNAMGLNGKTGIDFFKEQYFINNTVGNFDRN 346



 Score =  100 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/357 (10%), Positives = 94/357 (26%), Gaps = 12/357 (3%)

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFK 180
                    +         +V+      D      +  +         +N         +
Sbjct: 273 NLAHFGGGRLAALIELRDGDVRDEINKLDTMAMNFVDLVNDIHRNAMGLNGKTGIDFFKE 332

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
               ++     D+        S I  ++     +    +      TL          +  
Sbjct: 333 QYFINNTVGNFDRNGDGEYDSSYIFRLTGAYSLDPREQIGLEGTLTL---SAGTGTVQVP 389

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T         I+                +      +D+  P F  +  E +   +  
Sbjct: 390 YASTDMVADLVDRINRSGAEVVAYLDQNNKLVLKGTAAQDTENPDFVIRHVEDSGRFLAG 449

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
           ++     +G                        +S     +     NP  + D  +++  
Sbjct: 450 YAGVLTGSGAENAYDWQQPDAVNVLSQEGAQYAVSPIAHPSGWMEINPVVVSDLQNIAAG 509

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
           +    + +    D       +     I +    +    T  E+   ++  +      S  
Sbjct: 510 YPS-PEGIPYPGDNRAAVAIA----KIRNTPVMVGNTRTFDEFFAEAVTDMGLKGEQSEL 564

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  +   + +   +  GVN+ EEL+ +IK +  YN + + +   ++ML T++ 
Sbjct: 565 ALNTQTAIGKELRDMRDSISGVNIDEELADIIKFQHGYNATARFVAAVNEMLDTVIN 621


>gi|238916199|ref|YP_002929716.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC
           27750]
 gi|238871559|gb|ACR71269.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC
           27750]
          Length = 523

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 161/518 (31%), Gaps = 43/518 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPEN 49
           S       A      A         N+ N + K Y R    T                  
Sbjct: 3   STFFGLTIAYTGLQAAQTSINVTSHNLANINTKGYTRESASTKAADALRTYARYGTLGSG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V        + +D+    +++  GQ  +  S+ +  E    ++      +        
Sbjct: 63  VVVDAINQTRDSYYDEKYRNNNTNYGQYNVKNSYMSQIENYL-NEFTLKGYSTEYENFFS 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L    +  ++      +I+NA+ +   FNT +  ++ ++ DA+ EI+  +  +      
Sbjct: 122 ALNQLDRTPADTSAKNQLINNAKSLTDYFNTLSTNLRNVQVDANNEIKDAVQQINSLAQN 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY---TSDGTT 226
           ++ +N  I    A+  +A+D  DQR+ L+  +S+I+ I+    +  + +     T +G +
Sbjct: 182 ISSLNKQINQIQANYGNANDLKDQRNALIDDLSQIVNITVSESDMGNNLTNLQITINGNS 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN---QGSAVPKGKIKALLQIRDSVV 283
           L +                         D    +       S    G++K L+ IRD   
Sbjct: 242 LVDGYNYHTLQTVARENPRNVSDAAGLYDIQWENGQEFYIYSDSLSGELKGLIDIRDGCN 301

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +            ++         +E           K +     Q           
Sbjct: 302 GEIEKYASTTDAAGNSTYKTDADGNILTETESQKDKNTQYKGVPYYQSQLNQFIQTFASS 361

Query: 344 Y----------RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                        +   +                +     L+++      K  + D  A 
Sbjct: 362 VNEILNKGVTSDGSAQGISLFVMKENSQALTASTVTVNQALLDNADLLATKYNVSDGEAN 421

Query: 394 IN--------------TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           ++                 T   +  + +  +  + S + +       +   I     + 
Sbjct: 422 VDLIVDLINTKDARIYDGGTGSFFLESIVSDMSIDSSKAINFTKNYMNLQTTIQNQRLSV 481

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +GV+  EE   L+K +++YN+S+K++   +++   L+ 
Sbjct: 482 MGVDTDEEAMDLVKFQEAYNLSSKMLSVMNELYDRLIN 519


>gi|241113583|ref|YP_002973418.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861791|gb|ACS59457.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 486

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 161/485 (33%), Positives = 255/485 (52%), Gaps = 8/485 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N  Q+I NN  QQ + I  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSALNSVQSIFNNTGQQSSVISTNIANVGNSDYVRREASVTTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     ++    Q+ L +     + +   + Y  SP+ Y++  + +L+++  + S 
Sbjct: 61  TALLAQYLQTNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLTAFQQALQTFGTSPSS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               ++ +  A+++  + NT++  VQ IRA+AD EI  ++S L   LS+    N+A+K  
Sbjct: 121 TTAAQSAVTAAQDLANSLNTASDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+ LL++IS I+G+++ VR+NNDM +YTSDGT LFET+PR + F   
Sbjct: 181 TATGTDTSSALDEREKLLKQISSIVGVTSTVRDNNDMALYTSDGTVLFETIPRTVTFAPT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y   +E N I+IDGV + + +GS     G ++ALLQ+RD + P FQ QLDE+A+ L+ 
Sbjct: 241 ATYVAGTEGNSIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQAQLDEIAKSLVQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353
            FSE D              +                   IS  + V      + + LRD
Sbjct: 301 IFSETDGSTSAPGLFVWTTASGATGATPAASDDTTGIASTISVNLAVVTSEGGDATKLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            GS+S     N    +G+ D ++    +  +   F   AG++T+ +L +YA  SIGWLE+
Sbjct: 361 -GSISGITDLNTAGDSGFSDNLDALYQALTEQRSFSSDAGLSTSQSLTDYASASIGWLEQ 419

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            RSD+      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++   D+M Q
Sbjct: 420 YRSDATSASETTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQ 479

Query: 474 TLLEG 478
           +LL+ 
Sbjct: 480 SLLDI 484


>gi|260768775|ref|ZP_05877709.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP
           102972]
 gi|260616805|gb|EEX41990.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP
           102972]
 gi|315180478|gb|ADT87392.1| hypothetical flagellar hook-associated protein [Vibrio furnissii
           NCTC 11218]
          Length = 456

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/488 (13%), Positives = 158/488 (32%), Gaps = 43/488 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           MS+    N A +             +N  N ++  Y R+    +           +   V
Sbjct: 1   MSMY---NIALSGAMANQVAMNVTAQNTANINSAGYSRKVVDQSAVIYGNAGPNSAGSGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           +V + R  +     + L + ++ +       S     E +   +  N S    ++    +
Sbjct: 58  SVTSIRRVSDQAAVERLRSANTELQHHLAFMSGMKNIESVLGMEGLNVSLG--LNDFFAA 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           LE  + +    +    V+ NA+ +   FN +  ++      A ++    ++ +   L  +
Sbjct: 116 LEESTLSPESLVYRTQVLANAKSLSARFNGTMNQLSNHLNTAIQQQSTTLTQVNSQLQNV 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I+  +A  HD   + D  D  L  +S+ +GI+ +   +  + + T  G  L   
Sbjct: 176 ATLNEQIRLASAKGHDISAYQDALDTELSLVSQSMGINVLYNQDGTVELATQSGQPLVVG 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S    S    +  +G   +         G++ A+  +++        QL
Sbjct: 236 SHVAQLSVDTSSGDKYSTEITVRFNGESFAFKD---PKGGELGAIDTLKNEQYLPIMAQL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           ++MA     + +       +    PG  +                               
Sbjct: 293 NDMAAGFADAVNALLMTGTDLNGNPGQPLFTYDPANPAST-------------------- 332

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L      + +  ++     G  D+        N+    +        V + +     +G 
Sbjct: 333 LSVSNITAAELAFSSNGSVGNADIATELAKLANQPIDIN-----GEQVNIYDVYAQMLGT 387

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +      +   +  + +       +  +   V+  EE + L+    +Y+ + K+I   ++
Sbjct: 388 VGVVSQKAQGDYKAAMIGLTEAQSARDSISAVSSNEEAANLMMYMNAYSANMKVIATANQ 447

Query: 471 MLQTLLEG 478
           M  T+L  
Sbjct: 448 MFDTVLNS 455


>gi|292492369|ref|YP_003527808.1| flagellar hook-associated protein FlgK [Nitrosococcus halophilus
           Nc4]
 gi|291580964|gb|ADE15421.1| flagellar hook-associated protein FlgK [Nitrosococcus halophilus
           Nc4]
          Length = 647

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/470 (12%), Positives = 149/470 (31%), Gaps = 31/470 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M+     +   +      +  A+   NI N +   + R+ T  + S             V
Sbjct: 1   MATGDPLSIGLSGLLAMQRSLATTSHNIANVNTPGFSRQRTELSASLPESTAKGFIGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T R        + +  ++S   Q        A  + + AD       +  + +  +S
Sbjct: 61  NVATVRRAYDAFLTEQVQGYTSEYAQFETFHDLAAQIDNLFADP--EAGLSSSLQQFFNS 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++  + + S     +T++   E +   F+     ++ +    + ++   +  +    S +
Sbjct: 119 MQEMADDPSALAARQTLLTEGEVLAARFHFLDGRLRDLHDSVNTQLRDTVVEVNTLTSSI 178

Query: 171 TVVNDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N  I           A+DFLDQRD L+ ++++ + ++ + ++N  + V   +G  + 
Sbjct: 179 AKLNQRIFESHGQNGSQSANDFLDQRDQLIGELAQKVAVTVLPQDNGMLNVLIGNGQPMV 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                       + Y  +            +  N  + +  G++ ALL  RD  +   +N
Sbjct: 239 VGNHNSKLAILSDPYDSSRLDIGYTTGSDAL--NISNHITGGELGALLSFRDQALEPSRN 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL--------DNKLCQGISETICV 340
           QL ++A  +  +F+ +  +  + +   G      I           DN     +  T+  
Sbjct: 297 QLGQLALGITQTFNAQHHLGMDLKGELGRDFFSPIDSSAPVSLPRADNTGDGVVEITVSD 356

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             +   +   L   G        +   +    +                  +  + +  L
Sbjct: 357 ASKLTDSDYRLERDGVSYTLTRLSDNQVYSLTNFPGGTETVDGLTLDLTAGSMDSGDSYL 416

Query: 401 -------LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                   +     +    +  + +      +         S ++    N
Sbjct: 417 IQPTREAAQNFGVMLTDASRIAAAAPIRTEANLGNKGTGQISAASVTNTN 466



 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/377 (14%), Positives = 109/377 (28%), Gaps = 23/377 (6%)

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S    +   S + LG+  +   +      +       ++  D    I+            
Sbjct: 285 SFRDQALEPSRNQLGQLALGITQTFNAQHHLGMDLKGELGRDFFSPIDSSAPVSLPRADN 344

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  I    ASK    D+  +RD +   ++ +         N      T DG TL  
Sbjct: 345 TGDGVVEITVSDASKLTDSDYRLERDGVSYTLTRLSDNQVYSLTNFPGGTETVDGLTLDL 404

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           T     + +          +    +                +I A   IR       +  
Sbjct: 405 TAGSMDSGDSYLIQPTREAAQNFGV----------MLTDASRIAAAAPIR------TEAN 448

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L       I + S  +           + ++         +  G    +  +P    +  
Sbjct: 449 LGNKGTGQISAASVTNTNGLPLPVNGQITLSYDEATQQFNVNGGPGGLLSYDPATEGDGK 508

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-------NTNVTLLE 402
                      F  +     G   +I++     + N     +AG+           T  E
Sbjct: 509 EFTFPTLGGITFTISGTPADGDNFVIHNNTGGVSDNRNALAIAGLQTESSLQGETATYQE 568

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +    +  +      +      S  + +   E+     GVNL+EE + L++ +Q++  + 
Sbjct: 569 HYSRLVVDVGVRTRQAEVNRDTSGALLDQAVEAREGVSGVNLEEEAANLLRFQQAFQAAA 628

Query: 463 KLIMFTDKMLQTLLEGV 479
           ++I   D M Q+LL  V
Sbjct: 629 RVISVADDMFQSLLGAV 645


>gi|15642858|ref|NP_227899.1| flagellar hook-associated protein 1 [Thermotoga maritima MSB8]
 gi|4980572|gb|AAD35177.1|AE001695_3 flagellar hook-associated protein 1 [Thermotoga maritima MSB8]
          Length = 858

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 57/446 (12%), Positives = 131/446 (29%), Gaps = 30/446 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+  + N A    +        +  NI NA    Y R+  +                  
Sbjct: 4   MSMFGILNTALTGIHAHKLAMNIVGHNIANASTPGYSRQRPVIEANPPIPLTTLTQPSFP 63

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   V T         D      ++       + S     E + A +   +     
Sbjct: 64  LQMGTGARVKTIVRLRDAFLDVQYRQVNNRYNYWDTVLSNLHFIEQLLA-EPGEDGIRSL 122

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    ++ +    + S       V+  A+++V         ++++R D D EI   +S +
Sbjct: 123 VDNFWNAFKEVMSDPSSTASKAEVVSRAQQMVSQIKDLYGRLEQLREDIDAEIVQRVSEI 182

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +  L  +N+ I+         +D LD+RD +L ++S +  I+     +  + +   +
Sbjct: 183 NQMIKRLADLNNKIRTSMMLNSPPNDLLDERDRILDELSNLANINYTEAEDGQITLRIGN 242

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L  +  R++   +          + +F+    +          GK+KAL+ +RDS +
Sbjct: 243 QIVLNGSTYRELRALER---PYGKGYHELFVGNSQLIL------SDGKLKALIDLRDSSI 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  +LDE    +  S +        S  V          +  +              +
Sbjct: 294 VKYMRKLDEFVLFITDSLNLVHRDGFESNGVTTNLNFFKKIEAFSDDPSIFRIKGNRKLE 353

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                +               ++      + +    D  + N +         ++     
Sbjct: 354 MGPYHTVTGLHS---ANSQAEIEGRRFNSNDVVLSFDGGSSNVLNISAGTTIGDLVGSWN 410

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVF 429
              +   +  +          S    
Sbjct: 411 LLGTSLKVGTHAGGYRLYLEDSTGSL 436



 Score =  110 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 120/436 (27%), Gaps = 35/436 (8%)

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +  +    S      +   D                  ES    LS  +    V    E+
Sbjct: 427 LYLEDSTGSLRNRLFLSLGDSLSQMGFDTETKGYITIKESDLSGLSSGVYNINVEYILED 486

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
             +   T + ++      ++ E       +         +               D    
Sbjct: 487 GTRQTETISVDLSSGVNLSNIEAS-----INSSSHLRAQIYADPSTGENMLVIVPDEQLN 541

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
            D    K+       T                TL         F+    +T+T  S  I 
Sbjct: 542 FDPSAVKVLSDDDFFTESNAFVRNYEVLKYKDTLENIFYGQTGFDPTRPFTITINSTDIE 601

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQ---------IRDSVVPIFQNQLDEM--ARVLIGSFS 302
           ID  V +          K   +L           R S +  F  ++ E+   +    +  
Sbjct: 602 IDPAVDTLETLVEKINEKNTGVLADLTPHHSLVFRASSLYDFDLRMMEIKGPQGFFEAVG 661

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLC---QGISETICVNPQYRSNPSFLRDGGSVSK 359
             DP    +            K  D         +++ +  +      P  + +   VS 
Sbjct: 662 FVDPDGDPTTFDWNTSFTLVSKSDDFTTLSERFKVADILTFDRAPYDEPLNIVNQFEVSS 721

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG----------------INTNVTLLEY 403
               N  NLA          D    +      A                  N   +  E+
Sbjct: 722 SLATNPANLAVDVGYALENSDWNATSIKPSGGANPELLETIQNLYTRKMLSNGKESFYEF 781

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  L      + +L   ++++   I  +     GV+L EE++ +I+ + +++ + K
Sbjct: 782 FGGVVSELGVEAETASNLKNNTEILRQEIDNAREEVKGVSLDEEMANMIEYQHAFSAAAK 841

Query: 464 LIMFTDKMLQTLLEGV 479
           +I   D+M+QT++  V
Sbjct: 842 VITAVDQMIQTVINMV 857


>gi|42527853|ref|NP_972951.1| flagellar hook-associated protein FlgK [Treponema denticola ATCC
           35405]
 gi|41818681|gb|AAS12870.1| flagellar hook-associated protein FlgK [Treponema denticola ATCC
           35405]
          Length = 623

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 127/354 (35%), Gaps = 26/354 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           M+        +       Q   +   NI N+  K Y R+                     
Sbjct: 1   MATFDAIELGKRSLFAHQQSIQTAGHNISNSSTKGYTRQRVNLEAFEPIYRPDLTRAETP 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               + VT+ +       + D+ +   +  +G      S+ AL E +  ++  + S    
Sbjct: 61  GQIGQGVTIASITRLRDELLDQRIIGATDDLGYWETRNSYIALLEQVH-NEPEDISVRTR 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           + +  ++ +  S     D   + V    E +    +   R +Q IR     +IE  +  +
Sbjct: 120 MDQFWEAWQELSLYPESDAARQVVRTRTETLTDAIHHQFRGLQGIRDMVHGDIEATVKQV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                 +  +N+ I    A   + +D +D+RD+L +K+S +I IS   R+ ++  V  + 
Sbjct: 180 NDLTGRIAKLNEEIVKVKAMGDNPNDLMDKRDLLTEKLSSLIDISVDKRDEDETYVIHTA 239

Query: 224 G-TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           G   +     R  NF+        S  N  + D +   S   +    GK+ AL+++RD+ 
Sbjct: 240 GLEIVQGRTHRTFNFKA-------STENDKYADVIWEDSGNLAHFESGKLAALIELRDTD 292

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           +     +LD M    +   ++    A +     G+        ++N L      
Sbjct: 293 IRDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRN 346



 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 87/342 (25%), Gaps = 14/342 (4%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197
             +++      D      +  +          N         +    ++     D+    
Sbjct: 290 DTDIRDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRNGDG 349

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               S I  I+     +    +      TL       +      S  + S+         
Sbjct: 350 EYDYSYIFRITGTNTLDPREQIGLEGTLTLSSGDG--LVQVPYYSTDMVSDLVERINRSG 407

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
              +       K  +K +  +           +++  R L G                  
Sbjct: 408 SEVAAYLDQNNKLVLKGMTSLDKENPDFVIRHIEDSGRFLAGYSGVLSQAG----PEGAY 463

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                         Q     I     +      ++             + +A   D    
Sbjct: 464 DWGRANAVDVLAGAQYAVSPIAHPSGWMEINPVIKSDIQNIASGYKGPEGVAYPGDNRAA 523

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                    I +    +  + T  ++  +++  +      +         +   + +   
Sbjct: 524 ----LAIAAIRNTPVMVGHSATFDDFFADTVTEIGLKGEQAEMTLNTQIAIVKELHDMRD 579

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  GVN+ EELS +IK +  YN S + +   ++M+ T++  +
Sbjct: 580 SVSGVNIDEELSDIIKFQHGYNASARFVSVINEMIDTVINRM 621


>gi|325474917|gb|EGC78103.1| flagellar hook-associated protein FlgK [Treponema denticola F0402]
          Length = 623

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 65/423 (15%), Positives = 138/423 (32%), Gaps = 28/423 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           M+        +       Q   +   NI N+  K Y R+                     
Sbjct: 1   MATFDAIELGKRSLFAHQQSIQTAGHNISNSSTKGYTRQRVNLEAFEPIYRPDLTRAETP 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               + VT+ +       + D+ +   +  +G      S+ AL E +  ++  + S    
Sbjct: 61  GQIGQGVTIASITRLRDELLDQRIIGATDDLGYWETRNSYIALLEQVH-NEPEDISVRTR 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           + +  ++ +  S     D   + V    E +    +   R +Q IR     +IE  +  +
Sbjct: 120 MDQFWEAWQELSLYPESDAARQVVRTRTETLTDAIHHQFRGLQGIRDMVHGDIEATVKQV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                 +  +N+ I    A   + +D +D+RD+L +K+S +I IS   R+ ++  V  + 
Sbjct: 180 NDLTGRIAKLNEEIVKVKAMGDNPNDLMDKRDLLTEKLSSLIDISVDKRDEDETYVIHTA 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G  + +                 S  N  + D +   S   +    GK+ AL+++RD  +
Sbjct: 240 GLEIVQGRTH------RTFDFRASTENDKYADVIWEDSGNLAHFESGKLAALIELRDKDI 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TIC 339
                +LD M    +   ++    A +     G+        ++N L             
Sbjct: 294 RDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRNGDGEYDS 353

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 +  + L     +  +      +  G   +  +  D  +        +G      
Sbjct: 354 SYIFRITGTNTLDPREQIGLEGTLTFSSGDGIVQVPYYSTDMVSDLVERINRSGSEVAAY 413

Query: 400 LLE 402
           L +
Sbjct: 414 LDQ 416



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 87/342 (25%), Gaps = 14/342 (4%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197
            ++++      D      +  +          N         +    ++     D+    
Sbjct: 290 DKDIRDEIRKLDTMTMNFVDLVNDVHRNAMSPNGKTGIDFFKEQYFINNTLGNFDRNGDG 349

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               S I  I+     +    +      T        I      S  + S+         
Sbjct: 350 EYDSSYIFRITGTNTLDPREQIGLEGTLTFSSGDG--IVQVPYYSTDMVSDLVERINRSG 407

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
              +       K  +K +  +           +++  R L G                  
Sbjct: 408 SEVAAYLDQNNKLVLKGMTSLDKENPDFVIRHIEDSGRFLAGYSGVLSQAG----PEGAY 463

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                         Q     I     +      ++             + +A   D    
Sbjct: 464 DWGRANAVDVLAGAQYAVSPIAHPSGWMEINPVIKSDIQNIASGYKGPEGVAYPGDNRAA 523

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                    I +    +  + T  ++  +++  +      +         +   + +   
Sbjct: 524 ----LAIAAIRNTPVMVGRSATFDDFFADTVTEIGLKGEQAEMTLNTQIAIVKELHDMRD 579

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  GVN+ EELS +IK +  YN S + +   ++M+ T++  +
Sbjct: 580 SVSGVNIDEELSDIIKFQHGYNASARFVSVINEMIDTVINRM 621


>gi|121997313|ref|YP_001002100.1| flagellar hook-associated protein FlgK [Halorhodospira halophila
           SL1]
 gi|121588718|gb|ABM61298.1| flagellar hook-associated protein FlgK [Halorhodospira halophila
           SL1]
          Length = 685

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 138/406 (33%), Gaps = 19/406 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           ++ +     +    + +  A+   NI N +   Y R+      S               V
Sbjct: 1   MVDILQTGISGLRASQRGLATTSHNISNVNTDGYSRQRVEQDTSIPHYHSRGAIGTGTQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T +  +++     L  + +   +   L       + + AD   +   +  + +  D++E
Sbjct: 61  QTIQRLSEDHRVDALRNNHAEYERLDRLAEMTGRIDNLVADQ--DAGLSPSLRQFFDAVE 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + S  +  + ++   + +   F+T    +  +  D +K +  E   +      +  
Sbjct: 119 EVANDPSNTVSRQQLLTQGQALADRFHTLDNRLLTLEEDVNKRVRAEADKINGLAESIAE 178

Query: 173 VNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    T  +   +D LDQRD  ++++SE + +    +++  + V   +G  L    
Sbjct: 179 LNGEIRSRWTNPQRPPNDLLDQRDEKIRQLSEHVTVRVTEQDDRSLNVGIGNGQPLVTGD 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +      N++        + +          SAV  G +  LL+ R+ V+   ++++ 
Sbjct: 239 RANTLEVTRNAFDPERP--ELAVRRGDREVQITSAVQGGSLGGLLEFRNGVLDETRDEIG 296

Query: 292 EMARVLIGSFSEKDPIAGNSE-NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +A  L G+ +E+       +   P           +  +           PQ   +   
Sbjct: 297 RVATSLAGAMNEQHRSGIQFDSGYPEAGDDFFDYAREAGVSAHRGNAGDGQPQVVIDEER 356

Query: 351 LRD---GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           + D       ++     ++ L    + +       + +   D   G
Sbjct: 357 IGDLRRENYQARVVDGQLQVLTEDTNEVRTLGTGEDADIQPDADGG 402



 Score = 86.6 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/431 (11%), Positives = 111/431 (25%), Gaps = 8/431 (1%)

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  ++ +         S  G                       S    +++   S   
Sbjct: 258 AVRRGDREVQITSAVQGGSLGGLLEFRNGVLDETRDEIGRVA--TSLAGAMNEQHRS--G 313

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
              +      G    D A E   + +       + +   D+E   ++         +   
Sbjct: 314 IQFDSGYPEAGDDFFDYAREAGVSAHRGNAGDGQPQVVIDEERIGDLRRENYQARVVDGQ 373

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
              +   T          D                 +   + +          L E    
Sbjct: 374 LQVLTEDTNEVRTLGTGEDADIQPDADGGYRFDGLILYPPDPEAGDLQEGDRFLIEPTRN 433

Query: 234 DINFEKM--NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                +   +  T  + + P+          Q     + +I      R   V     +  
Sbjct: 434 AAQGIEGRLSRPTQVAAAAPVVTGEAPREDGQTENTGRARIGPPDVGRADGVMAALEEGG 493

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + + +  ++S+                    +D +      +SE +       +     
Sbjct: 494 ALQQGVEMTYSDDGTFNVTIGGDTVGTFEYDPEDPERGQVVNLSEDVEPVSGAAAEALAE 553

Query: 352 RDGGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            D          +     L G  + +    ++     + +     N N T  E     +G
Sbjct: 554 LDISVRISGVPDDGDRFGLYGNYEGVGDNTNALRMAELMEDTVMDNGNSTFQEAYSAMVG 613

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            L              + + N   E +    GVNL EE + +++ +Q+Y  + ++I   D
Sbjct: 614 ELGGFSQRVQTNRDAQEALLNQAKEQWEELSGVNLDEEAANMMEYQQAYQAAAQIITSAD 673

Query: 470 KMLQTLLEGVK 480
           ++ Q +L  V+
Sbjct: 674 EVFQEMLNAVR 684


>gi|225569938|ref|ZP_03778963.1| hypothetical protein CLOHYLEM_06033 [Clostridium hylemonae DSM
           15053]
 gi|225161408|gb|EEG74027.1| hypothetical protein CLOHYLEM_06033 [Clostridium hylemonae DSM
           15053]
          Length = 515

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/506 (13%), Positives = 145/506 (28%), Gaps = 31/506 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S  A F  AQ   +   +      +N+ N +   Y R+                      
Sbjct: 4   STFAGFTMAQQALSANQRAIDVAGQNLSNINTPGYTRQRLDLASISPVGASFSSSVYDNK 63

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
             + V +           D       + +G              +  D+  + +     +
Sbjct: 64  VGQGVMMKGISQIRDPFLDIQYRNQIAKVGTADAEDQILERLGEIF-DETDSAAVREAFN 122

Query: 106 KLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELEI-SN 162
            +   L++ +            +   + E ++   +  A  V  +  +  K++   +  N
Sbjct: 123 NVITQLKNMANPQDGGASSTDALVRSSFEVLINAIHEKANAVDALEEEMIKKMTDSVIPN 182

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+E+  +N+ IK      + A +  D+R+ LL  ++  + I    R +        
Sbjct: 183 INTCLNEIKNLNEEIKNSQILGNPALELQDERNKLLDDLATYLPIEVSYRTDTSGGEPID 242

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                F       +    ++       +      V +          G       I++ V
Sbjct: 243 LLDVTFRDSAGTKHTLISDTKIGEFHFDGTGGIPVSLEVTDALNPGGGASDITDLIQNGV 302

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +    + L++                G  +               + L +    +    P
Sbjct: 303 LKGNIDMLNKAEIFDGTDTKGIGYYRGMFDAFVNKLATVMNDLNGDALFEKSDGSGADQP 362

Query: 343 QYRSNPSFLRDGGSVS-----KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT- 396
              SN        + +               +     +    ++   +     V   +  
Sbjct: 363 FTASNIKVSEGWMNGTVSIKKSDGAVGGTGPSTEYKNVQLMINALISDKQVFTVKRPDGA 422

Query: 397 -----NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
                  T+     N        R  S  +      V N IS+S     GVN+ EE+  L
Sbjct: 423 DVTVFTGTIQNCYDNIQNVQAIERKASASILKNHLTVLNQISDSRDAVSGVNMDEEVMDL 482

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++  QSYN +++L+   D+ML  L+ 
Sbjct: 483 MRYHQSYNAASRLMTTMDEMLDKLIN 508


>gi|281418803|ref|ZP_06249822.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           JW20]
 gi|281407887|gb|EFB38146.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           JW20]
          Length = 519

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 182/520 (35%), Gaps = 44/520 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           MS    FN A      A +    I  NI N +   Y R+  + + S              
Sbjct: 1   MSSFFGFNVAVKGLFTAQRNMDIINHNINNVNTPGYSRQVAIQSASNPISLLNGTGMLGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              V+          D    + + + G+    ++  A  E+   ++  ++     I+   
Sbjct: 61  GSEVLAIERIRDEYLDYKYWSENISYGEWNAKRTLLADMEVTF-NEPSDSGFNAVINSFY 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +SL+  +K+ S D +   V +      + FN  A   ++++ D + +++  ++ +    +
Sbjct: 120 NSLQELAKDPSSDAIRALVKEQGVTFARYFNNIASHFEELQFDINNQVKTVVTEINSLGT 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVY 220
           ++  +N  I       + A+D  D+R +L+ ++S+++ I              ++  ++ 
Sbjct: 180 QIAQLNKQIYTAELDGNTANDLRDKRTLLIDELSKLVNIDVNEVVVGKLPNGKDDKRMII 239

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           T  G    +    +    K     +  E +   +  V+       +V  G++K LL +RD
Sbjct: 240 TISGKAFVDNFDVNKLTIKQRENKLNEEEDIPNLYEVLWEDGNSLSVRGGELKGLLDVRD 299

Query: 281 S-----------VVPIFQNQLDEMARVLIGSFSEK---------DPIAGNSENVPGLFIA 320
                        +P +  +L+E  R    +F+E                +    G+   
Sbjct: 300 GNDGENGSPNYKGIPYYIRKLNEFVRTFAIAFNEGIVGNDKVAGHVDGYGTNGNTGIRFF 359

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYC 379
             + + +  +      +                  +VS   L + +N+A           
Sbjct: 360 TILGEENKPISSADFMSAGDIDACYG--KMTAKNFTVSSDILDDPRNIATADTKEQVGNI 417

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            + N          +       ++ ++ I  L  +   +  L    + +   +     + 
Sbjct: 418 GNINSILAMRNNVHMFKEGAPEDFVKSVITTLAIDSQQTIRLSSIHKNMIEQVENQRMSV 477

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GV+L EE++ L+K  Q+Y  + ++I    ++   L+  V
Sbjct: 478 SGVSLDEEVANLVKHHQAYAAAAQMINTMAEVYDILINRV 517


>gi|125974728|ref|YP_001038638.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           ATCC 27405]
 gi|256005261|ref|ZP_05430228.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           DSM 2360]
 gi|125714953|gb|ABN53445.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           ATCC 27405]
 gi|255990812|gb|EEU00927.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           DSM 2360]
 gi|316941862|gb|ADU75896.1| flagellar hook-associated protein FlgK [Clostridium thermocellum
           DSM 1313]
          Length = 519

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 182/520 (35%), Gaps = 44/520 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           MS    FN A      A +    I  NI N +   Y R+  + + S              
Sbjct: 1   MSSFFGFNVAVKGLFTAQRNMDIINHNINNVNTPGYSRQVAIQSASNPISLLNGTGMLGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              V+          D    + + + G+    ++  A  E+   ++  ++     I+   
Sbjct: 61  GSEVLAIERIRDEYLDYKYWSENISYGEWNAKRTLLADMEVTF-NEPSDSGFNAVINSFY 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +SL+  +K+ S D +   V +      + FN  A   ++++ D + +++  ++ +    +
Sbjct: 120 NSLQELAKDPSSDAIRALVKEQGVTFARYFNNIASHFEELQFDINNQVKTVVTEINSLGT 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVY 220
           ++  +N  I       + A+D  D+R +L+ ++S+++ I              ++  ++ 
Sbjct: 180 QIAQLNKQIYTAELDGNTANDLRDKRTLLIDELSKLVNIDVNEVVVGKLPNGKDDKRMII 239

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           T  G    +    +    K     +  E +   +  V+       +V  G++K LL +RD
Sbjct: 240 TISGKAFVDNFDVNKLTIKQRENKLNEEEDIPNLYEVLWEDGNSLSVRGGELKGLLDVRD 299

Query: 281 S-----------VVPIFQNQLDEMARVLIGSFSEK---------DPIAGNSENVPGLFIA 320
                        +P +  +L+E  R    +F+E                +    G+   
Sbjct: 300 GNDGENGSPNYKGIPYYIRKLNEFVRTFAIAFNEGIVGNDKVAGHVDGYGTNGNTGIRFF 359

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYC 379
             + + +  +      +                  +VS   L + +N+A           
Sbjct: 360 TILGEENKPISSADFMSAGDIDACYG--KMTAKNFTVSSDILDDPRNIATADTKDQVGNI 417

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            + N          +       ++ ++ I  L  +   +  L    + +   +     + 
Sbjct: 418 GNINSILAMRNNVHMFKEGAPEDFVKSVITTLAIDSQQTIRLSSIHKNMIEQVENQRMSV 477

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GV+L EE++ L+K  Q+Y  + ++I    ++   L+  V
Sbjct: 478 SGVSLDEEVANLVKHHQAYAAAAQMINTMAEVYDILINRV 517


>gi|260892170|ref|YP_003238267.1| flagellar hook-associated protein FlgK [Ammonifex degensii KC4]
 gi|260864311|gb|ACX51417.1| flagellar hook-associated protein FlgK [Ammonifex degensii KC4]
          Length = 570

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/562 (11%), Positives = 159/562 (28%), Gaps = 87/562 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S                +   +   NI NA    Y R+      S               
Sbjct: 3   STFLGLETTLRALMAMQRSMETAAHNIANASTPGYSRQRVELAASSAYTIPSVLRPAAPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V +   +   +   D+     +S +G    ++      E++  ++   N     +
Sbjct: 63  QLGTGVDITGIKRVREEFLDRQWREENSRLGYWEAIRDALGKVELIL-NEPSPNGLGAAL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   ++ +  SKN     +   VI+  + + +       E+  +++D D  +++ +  + 
Sbjct: 122 TSFFNAWQELSKNSESLAVRTAVIEEGKTLCETIRHLYGELVALQSDLDYRLKVGVDEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN---------- 214
               ++  +N  I    A   + +D LDQRD+LL K+S+    +   + +          
Sbjct: 182 TLARQIAELNQQIARSRAVGDNPNDLLDQRDLLLDKLSKWTDFTVQEQPDGQVTVLVGNQ 241

Query: 215 ----------NDMVVYTSDGTTLFETVPRDINFEKMN----------------------S 242
                             +G  ++ +    + F+                         +
Sbjct: 242 QLVSVSGSSSIPNSWQVVNGQVVWASTNTVVGFQTGQLKGLIEVRDRDVKQVIEDLNNLA 301

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV-------------------- 282
            T  ++ N I   G  +      +   G   A + + + V                    
Sbjct: 302 STFIAKFNQIHQQGYGLDGQTNRSFFTGTGAADITLSNDVFNTPVALAAANANVTNTNPF 361

Query: 283 -------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                  +             +  S S        +       IA  I      +   + 
Sbjct: 362 TVASNYYLDPTAPLNLSGTFQIKLSNSANWSSVTLAPTDSLNSIATKINSAGAGVTAAVK 421

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
           +         ++ S      +         +              +  +      +   +
Sbjct: 422 QNGNQYWLEITSNSQTAIQFADDPTTHVLQQLGVLLLPGDGSNALALAQLASSKTMPPSS 481

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              T  ++ R  +  +    + +  +   S+++ + +       +GV+L EE++  +K  
Sbjct: 482 PTGTFGDFYRGLVAEVGIASAQAVRMTDNSKLLVDQLDNRRQAVMGVSLDEEMANFMKFS 541

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
            +Y  + + +   D+ L  L+ 
Sbjct: 542 HAYAAAARAMTILDEALDILIN 563


>gi|226944498|ref|YP_002799571.1| flagellar hook-associated protein [Azotobacter vinelandii DJ]
 gi|226719425|gb|ACO78596.1| flagellar hook-associated protein [Azotobacter vinelandii DJ]
          Length = 541

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/542 (14%), Positives = 164/542 (30%), Gaps = 72/542 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENKNM 62
           ++F+   +  N A    ++   NI N     Y R+ T+   +     V     + +    
Sbjct: 2   SIFSIGVSGLNAAQVALSTTSNNITNVYTDGYNRQVTLLGENNLGNGVQSNGVQRQFSLF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L+  +S     +  ++     + + AD       +  +     SL+  +   S+  
Sbjct: 62  VATQLNQSTSNSSALQAYETQITQIDNLLAD--SEAGLSPLLQSFFSSLQDLASAPSDPA 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             + +I  A+ +   F      +  ++   + +IE  +  +     ++ ++N  I    A
Sbjct: 120 ARQGLIGTADTLTAQFRAFDDYLNDMQQGVNGQIEDVVFQINNTAEQIAMLNREIGLAKA 179

Query: 183 -SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +    +  LDQRD L+ ++S ++ +   +++     +   +G  L             +
Sbjct: 180 KTGTVPNSLLDQRDQLVAELSGMVDVDLTIQDGGSYNISIGNGQALVSGTKSFALEAMAS 239

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S   T            +     +A   G++  L+  R   +   QNQL ++A  L   F
Sbjct: 240 SADPTRTVVGYRDGAGNLREFSETAFEGGELGGLMTFRRETLDKTQNQLGQLAVSLAQGF 299

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           + +     + E  PG       +               +  ++ ++ S L       K  
Sbjct: 300 NAQHMAGVDYEGNPGQAFFATTQPTVYSNANNT-SNAYLEAEFLADVSGLTASDYTVKYT 358

Query: 362 LWNVKNLAGYPDL---------------------------------------INHYCDSF 382
             +   +                                                  ++ 
Sbjct: 359 AADGYMVTRNDTGEVVETFAAGASSLEFGGMSVTVNGTPAEGDRFLVQPTKRAAGGLENL 418

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS----DSHDLHMKSQVVFNHISESYSN 438
            ++         + + T     RN++       S        L      +   +  + +N
Sbjct: 419 IQDTSLIAAGQDDGSGTGSGDNRNALALQNLQNSALVGGVATLSQAYASIVGDV-GNRAN 477

Query: 439 TVGVNLQ----------------------EELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V VNL                       EE + LI+ +Q Y  S K+I     +L TLL
Sbjct: 478 VVQVNLAAQQGLTEQLRALQQSESGVNLDEEAANLIRFQQYYQASAKIIEVGATVLDTLL 537

Query: 477 EG 478
             
Sbjct: 538 GL 539


>gi|261344136|ref|ZP_05971780.1| flagellar hook-associated protein FlgK [Providencia rustigianii DSM
           4541]
 gi|282567728|gb|EFB73263.1| flagellar hook-associated protein FlgK [Providencia rustigianii DSM
           4541]
          Length = 547

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/548 (14%), Positives = 164/548 (29%), Gaps = 75/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           L  V N A +  N A    + I  N+ NA    Y R+  +   +                
Sbjct: 2   LNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYF 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R E     +       +  G            + +  +D  +   +  I     +L+
Sbjct: 62  SHVRREFDEFVNAQYSQSRARSGDYEAYVKNCNKVDDLLTNDVED--LSSSIGSFFTALD 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S + S+  L    +  +  +V  F  + R +Q++  D + +IE ++ ++  +  ++  
Sbjct: 120 TASSDASDKTLIDVFLGQSNALVSQFKEADRRLQEMERDINHQIENKVKDINIYADKIAG 179

Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    + S  + +D LD RD L+ +++ +IG+  I + N +  V  ++G  L    
Sbjct: 180 LNQQIARIRSVSGSEPNDLLDVRDRLVNEVNSVIGVKVIEQ-NGNYNVTFANGLPLVTGE 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +      +S   +  S         V      A   G++  +L+ R  V+     +++
Sbjct: 239 KANRLEAVPSSKDDSRFSIGFVGSNGQVREIPDEAFKGGELSGVLRSRQEVIDPAYQKIN 298

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A V    F+E      +S    G       K           +T         +    
Sbjct: 299 KLALVFATKFNEIHSKGFDSNGNTGKDFFALGKGTVVSNTHNTGKTDFDLSYSDVSKVTG 358

Query: 352 RDGGSVSKKFLWNVKN-LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA-----R 405
            +         WNV     G    ++    +    F    +          +        
Sbjct: 359 NNYEMRYDGTNWNVTRLPDGVKITVDPSSTADTLKFEGLELKMTTNTPAAGDTFVVKPMN 418

Query: 406 NSIGWLEKNRSDSHDLHMKSQ--------------------------------------- 426
             I  +E   +++                                               
Sbjct: 419 GVINNMETLVTEASGFAGAGSKDGGPGDNENIKELVKLQDQKVVDGGSTFSDFYATLIND 478

Query: 427 ----VVFNHISESYS------------NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                    I                    GVN+ EE   + K++Q +N + +++   D 
Sbjct: 479 VGSRTKQAQIDSETQNKMTESFYRQEQEISGVNMNEESIQMQKIQQFFNANAQVLKTVDD 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 LFNALMRA 546


>gi|167576668|ref|ZP_02369542.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           TXDOH]
          Length = 452

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/479 (14%), Positives = 150/479 (31%), Gaps = 32/479 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +     +    ASQ   +  +N+ N+ N  Y RR  + +      V        N++  
Sbjct: 2   NIIYIGMSGIRAASQSLLATSQNMANSANNEYSRRGVLLSTGLTGGVDASGLLRLNESYK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN---SPTHYISKLRDSLESYSKNLSE 120
            + L       G+    QS+    E +   +  +    +      K   +LE+ S N  +
Sbjct: 62  TQQLWQAGGQYGRYNAAQSYFDQLEALFGGNPVDGKTKANDLGFGKFIGALEAASGNPGD 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +L   VI+ A  + + FN     +       +++    +  +      +  +N  I   
Sbjct: 122 SVLRNGVINAANTMTKQFNNMRSVLTNQLRSIEQQRVTTVERVNGLAKTVAELNGKIAAG 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             S  D    +DQRD  +  +S + G+  + + N  + V  ++G  L             
Sbjct: 182 QGSGADVSALMDQRDAAVDDLSRVAGVRVVQQANGTVDVSMTNGQPLVVGAQAGRIELGR 241

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    + S       + + +             L +    V+      L  +A      
Sbjct: 242 DAAGQQTLSLAFGSQTMPLRTGSLGGEL----LGLAEFEGEVLRPQMEALRTLAVRTAEL 297

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +++     +    PG  +                 T             ++        
Sbjct: 298 INDQLTQGFDMNGNPGKPL----------------ITYDAATGLLGIDPDVKPEELGFSG 341

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N  + A    LI     S +   I         +V+L       +G +      +  
Sbjct: 342 DPANPGDNANLLALIEIGSTSIDLPGI--------GDVSLGNAFATMMGKVGAASQQNKQ 393

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               ++ V       + +  GV+  EE+  +++ +  YN + K+I    ++ +T L  +
Sbjct: 394 AKGAAEAVRGQAELDWYSVSGVDRDEEVMNMLRFKDMYNANMKVIAVAGELFETTLNSL 452


>gi|283784090|ref|YP_003363955.1| lateral flagellar hook associated protein 1 [Citrobacter rodentium
           ICC168]
 gi|282947544|emb|CBG87097.1| lateral flagellar hook associated protein 1 [Citrobacter rodentium
           ICC168]
          Length = 455

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/484 (12%), Positives = 156/484 (32%), Gaps = 42/484 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+  + +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTDGYTRQVAVVSSIGASAGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q +    E + +D+  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTRQEYLTQLETVLSDE--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + V+  +  +    + +   +     +   + +  ++ +    S +   N
Sbjct: 120 TTSPDDAALREQVLSESGALALRIDNTLAYIDSQSDEIVSQEQAMVTQINTLTSGIANYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A    D RD +++++S I+ +   + +  +  V  ++G  L       
Sbjct: 180 KQIAQAEANGDNASALYDARDQMVEQLSGIMDVQVNIDDKGNYNVTLTNGQPLVSGQQSS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  +   +++ +         ++   +    G + AL   ++ V+    + ++ MA
Sbjct: 240 -----TIALETSADGSRSMSLTFAGTTASMTTDTGGSLGALFDYQNQVLTPLSDTINSMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + + +     +    PG  +        +       +       + S+P      
Sbjct: 295 AQFADAVNSQLAQGYDLNGNPGEPLFIYDAASSDGPLVVNPDITADKLAFSSSP------ 348

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       + +G  D +        +      +      V++ E     I  +   
Sbjct: 349 ------------DESGNSDNLQALIAISTRPLEIANL----GEVSVGEACSAIISNIGIF 392

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              +      +  V++           V++ EE   LI  +Q Y  + K+I    ++  +
Sbjct: 393 SQQNQTEAQAAANVYSEAQNQQ---SSVSMDEEAVNLITYQQIYEANLKVISAGAEIFDS 449

Query: 475 LLEG 478
           +LE 
Sbjct: 450 VLEM 453


>gi|238755319|ref|ZP_04616662.1| hypothetical protein yruck0001_10770 [Yersinia ruckeri ATCC 29473]
 gi|238706455|gb|EEP98829.1| hypothetical protein yruck0001_10770 [Yersinia ruckeri ATCC 29473]
          Length = 547

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/549 (15%), Positives = 182/549 (33%), Gaps = 74/549 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS   + N A +  + A    +++  NI N     Y R++ +   +             V
Sbjct: 1   MS-NNLINTAMSGLSAAQYALSTVGNNISNFQVTGYNRQNAIFAQNGGILSPAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           T+     E  +     L +  +         +  +  + + A+   +N+ +  +     +
Sbjct: 60  TITGINREYNSFISNQLRSAQTESAGLTTYYNQVSQIDNLLAN--KSNNLSVTLQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+D   KTV+  AE +V  F  + + +Q +    ++ I    + +  +  ++
Sbjct: 118 LQNLASNSSDDAARKTVLGKAEGLVNQFKNADKYLQDMNNGINQSINDSATKINNYAEQI 177

Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +ND I     +S  + +  LDQRD L+ +++ II +S   ++ +   V  + G  L +
Sbjct: 178 ANLNDQITRLRGSSGSEPNALLDQRDQLVSELNTIIPVSVTQQDGDAYNVSFAGGLALVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                      +S   T  +      +G  V+    S +  G +   L+ R   +   +N
Sbjct: 238 GSESYNVRAVPSSADGTRLTLGYDRGNGSEVAEVDESRISTGSLGGTLKFRSEALDNARN 297

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL ++A  +  SF+++     + +   G    +  +                     S+ 
Sbjct: 298 QLGQLALAMADSFNQQHEKGFDLQGDAGEKFFNFTQPSTISNSNNTGTGSLNVTFADSSQ 357

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYP-----------------DLINHYCDSFNKNFIFDPV 391
               D         W +  L+                    ++           F   PV
Sbjct: 358 VKASDYSMEFDGTNWQITRLSDKSKIMPKTEADGSLSFDGLNVTVGAGAVLGDKFTVKPV 417

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDS---------------------HDLHMKSQVVFN 430
           +G+ +N+ +     + I                                 L      + +
Sbjct: 418 SGVISNLDVAIQDSSKIAAAGSKDGGVGDNTNAKALLGLQTEKLVDGKATLSGAYAGLVS 477

Query: 431 HISES---------------------YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +                          +  GVNL EE   L++ +Q Y  ++++I  + 
Sbjct: 478 TVGNQTSTAKVNATAKVNIVKQLNMEQQSISGVNLDEEYGDLLRFQQYYLANSQVIQASS 537

Query: 470 KMLQTLLEG 478
           K+   LL  
Sbjct: 538 KLFDALLAI 546


>gi|288940415|ref|YP_003442655.1| flagellar hook-associated protein FlgK [Allochromatium vinosum DSM
           180]
 gi|288895787|gb|ADC61623.1| flagellar hook-associated protein FlgK [Allochromatium vinosum DSM
           180]
          Length = 723

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 139/429 (32%), Gaps = 15/429 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           +V            +  A+   NI NA  + Y R+      +           + V V  
Sbjct: 2   SVLGTGITGLLAFQRALATTSHNISNAATEGYSRQRVDLATNIPQRLGSGYIGQGVNVDG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R    +  D  L    S          F    + + AD   +      +     + +  
Sbjct: 62  IRRLQNDWIDAQLRTSLSDNASATTRADFAERVDNLLADQ--STGLAPTLESFFAAGQDV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + + +       +++ AE +   F      + + R  A+ +IE  I  + ++   +  +N
Sbjct: 120 ASDPTALPARMVLLNEAETLTGRFEAINGRLDEQRRLANGQIETSIEEINQYAESVADLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I  ++ +    +D LD+RD +L+K+SE + +S   +++  + V+   G  L       
Sbjct: 180 KQIIARSTAGSPPNDLLDRRDTILRKLSEKVDVSLSTQDDGAVNVFIGSGQGLVVGTNAS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  S    +    +         N    V  G+I  LL+ R +++   QN+L   A
Sbjct: 240 ELTFSNLSGDPVNWDIGLRAAQGNEPINITRFVTGGEIGGLLETRSNLLDKAQNELGLTA 299

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L   F+E++ +  + +   G  I +  + + N                  +     D 
Sbjct: 300 LNLADRFNEQNRLGLDLDGELGGDIFELPEVVVNPALNNSINAEPAVTFSDVSQLTPSDY 359

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                   + +  L     +      +       D   G+  + T +  + +   WL + 
Sbjct: 360 RLRYDGANFQLTRLPENTSVTLVPDAADPNVRFAD---GLRIDTTAIAGSASGDSWLIQP 416

Query: 415 RSDSHDLHM 423
              +     
Sbjct: 417 TRFAASGLD 425



 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 70/266 (26%), Gaps = 7/266 (2%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
                L    P       + + T       +F         +  +      + L      
Sbjct: 457 MSSDPLNPASPDTYLPAAIVAGTDAVTGADVFNRLAPRYGTEAGSATVESFRVLDTQHAD 516

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
           +        D      +            +  +        I+   N    G    I V+
Sbjct: 517 LSTPVSVTFDAANNQFVVGQERFALDPTGTTTIQANGWELKIQGTPNTGTTGSVIDIQVD 576

Query: 342 PQYRSNPSFLRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN--- 397
               + P       +    +        AG    +    D    N     + GI      
Sbjct: 577 TTPVATPQPADTTITGPGWELDIRGTPAAGDLFTVELGKDRPGDNRNMLEMTGIQGERLI 636

Query: 398 ---VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
               TL       I  +      +      S V      +   +  GVNL EE + +I+ 
Sbjct: 637 QGRTTLQGGYNTLIADVGTQTRRAQISRDSSAVQLESAQQQRESLSGVNLDEEAANMIRF 696

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I  + +M  TLL  V+
Sbjct: 697 QQAYRAAAQVITTSGEMFDTLLNAVR 722


>gi|322382414|ref|ZP_08056317.1| FlgK-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153631|gb|EFX46010.1| FlgK-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 472

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/459 (15%), Positives = 156/459 (33%), Gaps = 23/459 (5%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
            T+       V + +         D+        +G   + +      E +   +  +  
Sbjct: 11  TTIPGQMGTGVDMHSITRIRDRFLDEQFRNEYKNLGNWEIQKDTLDKLEGIF-PEPSDTG 69

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               +    DS   +SK+  ++   K +  NA  + +  N ++++++ I    DK + ++
Sbjct: 70  LRKVLENFWDSWAEFSKDSDKNTGRKLIRQNAIALTEAINQASKQIKDISQGLDKSLNMK 129

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN----N 215
           I ++   L  ++ +N+ I         A+D  D+RD +  ++S+++ I+          +
Sbjct: 130 IEDVNSILKTISTLNNEITRVEKMGDHANDLRDERDRMTDELSKMMNITVSEGPEGYNIS 189

Query: 216 DMVVYTSDGTTLFETVPRDI----------------NFEKMNSYTVTSESNPIFIDGVVV 259
              V    GT +       I                     ++Y    +     I   + 
Sbjct: 190 MGKVNLLSGTEVNPVTKESIEESFKSGDLSSGELAGLITSRDTYVHDYKKQLDDIANTIA 249

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
           +      +PKG +     + D V     N+       +           G     P    
Sbjct: 250 NGEITITIPKGSVLPEGTVLDGVTYTGANRTLTEDLTVTVKGLNGLHQLGYINGNPPEAG 309

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                  D       +E IC+NP   ++P+ +      ++    + K ++G   L     
Sbjct: 310 GPFFTTKDGSDVI-TAENICLNPDIINDPNKIAS-SMATEGTGADEKLISGNNTLAKLMA 367

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
              +  F F       TN T+ ++  + +G L     ++   +     +        ++ 
Sbjct: 368 QLKDTKFTFSGAGRGITNSTINDFYGSLVGQLGVQSKEATRQYENEGKLVVQADTRRTSV 427

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            GV   EE+  ++K   S+N + + +   D++L  L+ G
Sbjct: 428 SGVVELEEMMEMVKYNHSFNAAARFMTTYDEILNKLING 466


>gi|320538492|ref|ZP_08038355.1| flagellar hook-associated protein FlgK [Treponema phagedenis F0421]
 gi|320144663|gb|EFW36416.1| flagellar hook-associated protein FlgK [Treponema phagedenis F0421]
          Length = 625

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 133/414 (32%), Gaps = 28/414 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS  A     +       Q   +   N+ N+    Y R+                     
Sbjct: 1   MSTFASIELGKRSLFAHKQSVQTAGHNVANSSTPGYTRQRVNLDAFEPLYRPDLSRAETP 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               + VT+ +       + D+ +   S   G       +  L E +  ++    S    
Sbjct: 61  GQIGQGVTIGSIVRLRDELLDQRIVGQSYDYGYWNTRDPYVQLLEQVY-NEPDTTSVRTR 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           + +  DS +  S         + VI   + +    +   R ++ I+   + +IE  +  +
Sbjct: 120 MDQFWDSWQELSVYPESAAARQAVITRGQTLTDAIHHQYRGLKGIQDMVNGDIEATVKQI 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               +++  +N+ I    A   + +D +D+RDV ++K++ +I IS   R+ ++  V  + 
Sbjct: 180 NDLTAKIAALNEEIVKSKAMGDNPNDLMDKRDVYVEKLANLIDISVDKRDIDETYVIHTA 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G  L +            +       N  + + +   S + +    GK+ +L+++RD  +
Sbjct: 240 GLELVQGKTHKTFGLVSGTE------NDGYANVIWDDSKERAHFASGKLASLIELRDGDI 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TIC 339
                +LD M    +   ++    A       G+        ++N               
Sbjct: 294 RDEIRKLDTMTMNFVDLVNDVHKNAMGLNGKTGIDFFKEQYFINNIDGNFDRNGDGEYDS 353

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                 +    L     +  +    +    G  ++  +  D  +        A 
Sbjct: 354 SYIFRITGAHPLDPRQQIGLEGSITLSAADGTVEVPYYLTDMVSDLVARINQAN 407



 Score =  110 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 90/342 (26%), Gaps = 12/342 (3%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVL 197
             +++      D      +  +         +N         +    ++     D+    
Sbjct: 290 DGDIRDEIRKLDTMTMNFVDLVNDVHKNAMGLNGKTGIDFFKEQYFINNIDGNFDRNGDG 349

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               S I  I+     +    +      TL      D   E     T         I+  
Sbjct: 350 EYDSSYIFRITGAHPLDPRQQIGLEGSITL---SAADGTVEVPYYLTDMVSDLVARINQA 406

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
                         +       +   P F  +  E +   +  ++     +G        
Sbjct: 407 NAEVVAYLDQNNQLVLKGTTSANPDNPDFVIRYVEDSGRFLAGYAGVLAQSGEGGAYNWE 466

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                           +S     +     NP    D  +++  +  +        +    
Sbjct: 467 QANAIAALAPEGAQHAVSPIAHPSGWMEINPEVKTDIQNIAAGYPGSEGVPYAGDNR--- 523

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +     + +    +    T  ++   ++  +      S         +   +++   
Sbjct: 524 --AALAVAKLRNSPVMVGDKRTFDDFFAEAVTAIGLKGEQSQLALETQTAILKELTDMRD 581

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              GVN+ EELS +IK +  YN S + I   ++ML T++  +
Sbjct: 582 AVSGVNIDEELSDIIKFQHGYNASARFIATVNEMLDTIINRM 623


>gi|300918686|ref|ZP_07135266.1| flagellar hook-associated protein FlgK [Escherichia coli MS 115-1]
 gi|300414160|gb|EFJ97470.1| flagellar hook-associated protein FlgK [Escherichia coli MS 115-1]
          Length = 547

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I       +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGEGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASALL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|157146220|ref|YP_001453539.1| flagellar hook-associated protein FlgK [Citrobacter koseri ATCC
           BAA-895]
 gi|157083425|gb|ABV13103.1| hypothetical protein CKO_01977 [Citrobacter koseri ATCC BAA-895]
          Length = 544

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/545 (11%), Positives = 158/545 (28%), Gaps = 71/545 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E  +     L A  +      +     +  + + +    +   +  +     SL+
Sbjct: 61  SGVQREYDSFITNQLRAAQNQSSGLTVRYEQMSKIDNLLSSTTSSI--STSLQGFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  A+ +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNIAIGSSVEQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI------------ 278
                     +S   +  +                 +  G +  LL              
Sbjct: 239 SSARQLAAVPSSADPSRTTVAYVDATAGNIEIPEKLLNSGSLGGLLTFRSQDLDQTRNTL 298

Query: 279 ------------------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
                              D+     ++        ++ +         ++E      + 
Sbjct: 299 NQLALAFAEAFNAQHKQGYDANGDQGEDFFSIGKPSVLSNAKNTGSGTLSAEVTDSSAVQ 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                L           +  N  +++  +  +      +  +    N      L      
Sbjct: 359 ATNYKLVFDGQDWQVTRLSDNTSFKAVETNGKLTFDGLEVTVGAGANANDSFTLKPVSDA 418

Query: 381 SFNKNFIFDPVAGIN---------------------------TNVTLLEYARNSIGWLEK 413
             N N +    + I                             N +  +     +  +  
Sbjct: 419 IVNMNVLVTDESKIAMASDPDAGGSDNRNGQALLDLQTQKTVGNKSFNDAYATMVSDVGN 478

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             +           V   +     +  GVNL EE   L + +Q Y  + +++   + +  
Sbjct: 479 KTATLKTSSTAQGNVVTQLYNQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANTLFD 538

Query: 474 TLLEG 478
            LL  
Sbjct: 539 ALLGI 543


>gi|24217008|ref|NP_714489.1| flagellar hook-associated protein FlgK [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198413|gb|AAN51507.1| flagellar hook-associated protein FlgK [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 636

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 131/390 (33%), Gaps = 25/390 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +     +       Q   +   NI NADNK+Y R+    T                 
Sbjct: 3   STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V + +      N  D  +   S           +    E +  ++    +    +
Sbjct: 63  QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARNEYLYQLETVF-NEPNGTTLRTLM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            K   S E  +    ++     V++ A  +        R++ ++R  A++EIE +  +L 
Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKTYHLN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +  +N+ I    A     +D  D+RD LLQ++S ++ ++    + ++++V+    
Sbjct: 182 TIAENIRTLNERIGKSEALGDRPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       I+     S           +D    ++     + KG+++ L+++RD V+ 
Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLFWSATGDPVLLRKGRLQGLIEVRDKVIR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +Q+D ++  ++ + +E                 +      N   +  S     N   
Sbjct: 295 EKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFNIRSLSINTFGEYDSNGDGQNDVT 354

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                  R+     +    N        D+
Sbjct: 355 AIFRVTGRNTVDPDRPIGINGTITFHQSDV 384



 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/422 (10%), Positives = 123/422 (29%), Gaps = 9/422 (2%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D +L   SS +         + L   +        +  + I  + +  +    +L     
Sbjct: 212 DALLQELSSLVDVTIGRSDEDELMVFIGQQILVQGNKANKIDIIGNPSKDGLLDLFWSAT 271

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK--- 180
           G  V+     +        + +++     D      +  +     +   +N         
Sbjct: 272 GDPVLLRKGRLQGLIEVRDKVIREKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFN 331

Query: 181 -TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             +   +     D        ++ I  ++     + D  +  +   T  ++  ++     
Sbjct: 332 IRSLSINTFGEYDSNGDGQNDVTAIFRVTGRNTVDPDRPIGINGTITFHQSDVKESPILI 391

Query: 240 MNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             S   T       I+    GVV   N  + +      A      + +        ++  
Sbjct: 392 PYSSNDTLNGIIKKINASRSGVVAYMNHDNQLALKATVADDHPNKNFILRHIEDSGDLLV 451

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            + G      P         G      ++  D  L               S  + + +  
Sbjct: 452 GMTGILMASGPSGAYDYRRLGEINKLQVRSEDVTLTPHFHP-ASHFRVADSIANNVANIA 510

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +   K +    +        +        + + +    ++ + T  ++    I  L    
Sbjct: 511 AARGKDVGGTGDYNSPGGHKDGRNALMVASALRNSPVMVDYSKTTDDFYNTLISKLGTEA 570

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            ++         +   +     + +GVNL EE++ +++ + +YN S K+I   +++L T+
Sbjct: 571 REAKQEFGIQNDLMTELENMRQSVMGVNLDEEMANMVQFQHAYNASAKMINTMNEILDTI 630

Query: 476 LE 477
           + 
Sbjct: 631 IN 632


>gi|170737044|ref|YP_001778304.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           MC0-3]
 gi|169819232|gb|ACA93814.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           MC0-3]
          Length = 429

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/459 (13%), Positives = 150/459 (32%), Gaps = 32/459 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79
                RN  N     Y R+  + T  +   V   +      +   +   A   ++G+ R 
Sbjct: 1   MDRSARNTANQQTVGYTRQGVLRTARASGGVDASSVIRFGDHANTQQKWASHGSVGEHRA 60

Query: 80  LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139
           ++S+    E +      + S    + K   +L++ S +++   L + V+  A  + ++FN
Sbjct: 61  VESYFRQLEEVMGL--KDGSIKVSMGKFFGALDAASADVANSALRQQVLLAAGGMAKSFN 118

Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
           +  + ++       ++    +  +         +N  +    A+     + +DQRD  + 
Sbjct: 119 SVQQMMRGQLDTLRQQSAATVEQINGLSRTAAELNRLVAEAEANGGAPSELIDQRDQAID 178

Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV 259
           ++S ++ I T+ + +  + V  + GT L           KM   T++  +  + ++    
Sbjct: 179 QLSALVDIRTVRQPDGTVDVSLAGGTPLI----AGHQVAKMRVETLSGGTFELKLELAGT 234

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                 A   G++  L       +      +  +A  L GSF+E+          PG  +
Sbjct: 235 QYPVDGAKIGGELGGLSSFAKDTLLPQMEAIRSLAAELAGSFNEQVTAGFGMGGSPGKAL 294

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                   +     +             P                     G  D +    
Sbjct: 295 FTFNPVTGHLTANEMKPEELGFSGDPKAP---------------------GNSDNLLKLI 333

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +  ++              +L +     +G L      +      +  V     E++ + 
Sbjct: 334 ELRSRRVDLPGF----GEASLGDAYVLLVGKLGAQSEQNQSSLAIAVNVRQRAEEAWQSL 389

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            GV++ EE     +  Q Y+ + K+I    ++    +  
Sbjct: 390 SGVSMDEEAVNFSEALQVYSANMKVISVAKELFDATIRA 428


>gi|116326933|ref|YP_796653.1| flagellar hook-associated protein FlgK [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116332402|ref|YP_802120.1| flagellar hook-associated protein FlgK [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119677|gb|ABJ77720.1| Endoflagellar hook junction protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116126091|gb|ABJ77362.1| Endoflagellar hook junction protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 636

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/457 (12%), Positives = 141/457 (30%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +     +       Q   +   NI NADNK+Y R+    T                 
Sbjct: 3   STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V + +      N  D  +   S           +    E +  ++    +    +
Sbjct: 63  QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARNEYLYQLEAVF-NEPNGTTLRTLM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            K   S E  +    ++     V++ A  +        R++ ++R  A++EIE +  ++ 
Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKAYHMN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +  +N+ I    A     +D  D+RD LLQ++S ++ ++    + ++++V+    
Sbjct: 182 TIAENIRTLNERIGKSEALGDKPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       I+     S           +D    ++     + KG+++ L+++RD ++ 
Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLYWSATGDPVLLRKGRLQGLIEVRDKIIR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +Q+D ++  ++ + +E                 +      N   +            
Sbjct: 295 EKIDQVDSLSINVMDAVNEIHKDGFGINGNTNQAFFNVRSLSINTFGEYD----SNGDGQ 350

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +  R  G  +      +          +   ++                  +    
Sbjct: 351 NDITAIFRVTGRNTIDPDRPIGINGAISFNQSDVKEASVLIPYSSNDTLNGIIKKINASR 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
              + ++  +   +    +       +    +    G
Sbjct: 411 SGVVAYMNHDNQLALKATVADDHPNKNFILRHLEDSG 447



 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/422 (10%), Positives = 120/422 (28%), Gaps = 9/422 (2%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D +L   SS +         + L   +        +  + I  + +  +    +L     
Sbjct: 212 DALLQELSSLVDVTIGRSDEDELMVFIGQQILVQGNKANKIDIIGNPSKDGLLDLYWSAT 271

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK--- 180
           G  V+     +        + +++     D      +  +     +   +N         
Sbjct: 272 GDPVLLRKGRLQGLIEVRDKIIREKIDQVDSLSINVMDAVNEIHKDGFGINGNTNQAFFN 331

Query: 181 -TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             +   +     D        I+ I  ++     + D  +  +   +  ++  ++ +   
Sbjct: 332 VRSLSINTFGEYDSNGDGQNDITAIFRVTGRNTIDPDRPIGINGAISFNQSDVKEASVLI 391

Query: 240 MNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             S   T       I+    GVV   N  + +      A      + +        ++  
Sbjct: 392 PYSSNDTLNGIIKKINASRSGVVAYMNHDNQLALKATVADDHPNKNFILRHLEDSGDLLV 451

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            + G      P         G       +  D  L      +           +      
Sbjct: 452 GMTGILMASGPSGAYDYKRLGEINKLQARSEDITLTPHFHPSSHFRVADSIANNVANIAA 511

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +  K         +      +        + + +    ++ + T  ++    I  L    
Sbjct: 512 ARGKDVGGTGDYNSP-GGHKDGRNALMVASALRNNPVMVDYSKTTDDFYNTLISKLGTEA 570

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            ++         +   +     + +GVNL EE++ +++ + SYN S K+I   +++L T+
Sbjct: 571 REAKQEFGIQNDLMTELENMRQSVMGVNLDEEMANMVQFQHSYNASAKMINTINEILDTI 630

Query: 476 LE 477
           + 
Sbjct: 631 IN 632


>gi|28211376|ref|NP_782320.1| flagellar hook-associated protein 1 [Clostridium tetani E88]
 gi|28203817|gb|AAO36257.1| flagellar hook-associated protein 1 [Clostridium tetani E88]
          Length = 579

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/584 (11%), Positives = 149/584 (25%), Gaps = 110/584 (18%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------- 45
           MS L    +  ++      +       N+ NA+ + Y R+                    
Sbjct: 1   MSGLFGTLHVGKSGIFANQKAIDVTSHNMANANTEGYSRQRAELQTERPFCTPSMNNAVG 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLH-----------------------AHSSAIGQQRL 79
                  V V           D  +                        +  S  G   L
Sbjct: 61  AGQLGRGVNVADINRVRDAFLDYQVRIELGVQGTYVERNKFLNEIENIFSEPSETGISTL 120

Query: 80  LQSFEALKEMMSADDHYNNS----------PTHYISKLRDSLESYSKNL--------SED 121
           L  F    + +S   H +N+           T  ++ L   L     N         ++ 
Sbjct: 121 LGKFYKGWQELSKQPHSSNARTVVAEQSKALTDELNHLHKQLNKLKDNTKNCIRQDLNDV 180

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 ++   E +    T+ +    +    D  I+   S     + +  +    I    
Sbjct: 181 NSILDQMERLNEEIIQITTAGQRPNDLLDKRDLLIDKLSSKFGINIDKKGLNAIDINTNG 240

Query: 182 ASKHDAHDFLDQRDVLLQKIS--------------------EIIGISTIVRNNNDMVVYT 221
               +     +    +    S                        I+     +       
Sbjct: 241 QKGSEPPKDKNLIQAVNPDESVRLAYISSIEPDGKHKPGEAGKYKITYYKNADITDDKNK 300

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----AVPKGKIKALLQ 277
                                +T            V  S             G +   + 
Sbjct: 301 VTFEINLNETQYKELDRSRTLWTDKKGDTLDKDGNVKKSPQFDDLKIFNPNTGNLNGYMT 360

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           ++D +      QLD++AR L  + +     +    +    F+            +  +  
Sbjct: 361 VQDDIDVQ-IEQLDKLARSLAYTVNAVHSQSEGYSDKDLFFVNKD----GGPEHEITAGN 415

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-------------- 383
           I +  +   N   ++  G   K    +        +L++      N              
Sbjct: 416 ITIKKEILENVMNIK-VGKGDKPGETDGTRALAIANLMDKLMAIQNLDLTEKDRREALVK 474

Query: 384 -------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                       + +      +T   Y ++ +  L     ++  +     +V ++  +S 
Sbjct: 475 LGSGWGPDEAGINTITANTNGMTYGGYFKDVVDKLGVQSQEAKRMVKNQFIVLSNFQQSR 534

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               GV++ EE + LI+ + +Y  + K+I   D++L  ++ G+K
Sbjct: 535 EQASGVSIDEETTNLIQFQHAYQANAKIISTVDELLDVVINGLK 578


>gi|152965588|ref|YP_001361372.1| flagellar hook-associated protein FlgK [Kineococcus radiotolerans
           SRS30216]
 gi|151360105|gb|ABS03108.1| flagellar hook-associated protein FlgK [Kineococcus radiotolerans
           SRS30216]
          Length = 482

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 157/501 (31%), Gaps = 40/501 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS  +  N A      A +   +  +NI N +   Y R+    + S              
Sbjct: 1   MSTFSGINTASRALGAAQRGMETTGQNIANVNTPGYSRQRVEQSSSVLNQTGQFTQKYVP 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
            + V V      +  +        S+A  +Q    S  +  E    D    +  +  +  
Sbjct: 61  GDGVVVNGLTRVSDALATATARQDSAAAQEQATAASIWSGVENAIGDTGA-SGLSENLKD 119

Query: 107 LRDSLESYSKNLSEDILGKT---VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           L  +    +     D L      VI  ++ V         +++        + +   +  
Sbjct: 120 LSSAWNDLAAKAGTDGLAGAQSLVITRSQTVATQIVGMNTQLEGQYDQLTLQADTLATQA 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                 +  +N  I+  TAS   A++ +DQRD LL ++S+I G   + R N  + V   +
Sbjct: 180 NTIAGNIAKLNTGIRETTASGASANELMDQRDQLLNQLSDITGSRVVHRENGTVDVLVGN 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNP----IFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T +      D+      S T T+   P    I    V     Q +    G +KA     
Sbjct: 240 ATIVTGDFSYDLKIGVQESTTSTAPIAPGAERIGNQLVATIGGQNAGPVAGSLKATFDGA 299

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +  +   Q  L++ A  L    +        S    G                  S    
Sbjct: 300 NKTLADQQKGLNDFATDLTTKVNAAYGTTFFSSVEAGWTTGPVKAAQLTVSVTTTSFRDS 359

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 +  +      +VS+ F       A                              
Sbjct: 360 TGTGTGTGSADRAYARAVSEAFNGAPAKPAVGTTPAKPAVTG------------------ 401

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           + +  R  +  L  +   +++    S  V    S       GVNL EE++ L+  + +Y+
Sbjct: 402 IKDGWRTHVTNLAASTQSANNRAELSAQVSLKSSAVRDGVSGVNLDEEMTNLVAYQHAYS 461

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            + K++   D+ LQ+LL  V+
Sbjct: 462 AAAKVLTTMDEALQSLLNMVR 482


>gi|323175237|gb|EFZ60850.1| flagellar hook-associated protein FlgK [Escherichia coli LT-68]
          Length = 547

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|291280513|ref|YP_003497348.1| flagellar hook-associated protein 1 FlgK [Deferribacter
           desulfuricans SSM1]
 gi|290755215|dbj|BAI81592.1| flagellar hook-associated protein 1 FlgK [Deferribacter
           desulfuricans SSM1]
          Length = 584

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 130/415 (31%), Gaps = 20/415 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  +F    +    +         NI N + + Y R+                      V
Sbjct: 4   IFGIFQTGVSGLMVSQAGIDVTGHNIANVNTEGYSRQRLSIETEIPLLIHPGPFGRGAKV 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +      ++  K L   +S +     LQ      E    +    +     + +  ++  
Sbjct: 64  SSVLRTYDDVLAKNLRDSTSNLRYYESLQQSLESVETYFNELEAGSGLGDALKEYFNAWS 123

Query: 113 SYSKNLSE-----DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             S    +      +   T+I+ +E ++Q  +   + ++++R  +D+ I+  +  +    
Sbjct: 124 DLSNTAPDKSDEATVKRVTLIEKSETLIQKIHDGYQSIEEVRNRSDENIKEYVKEINDLA 183

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +   N  I         A+D  D+R++LL K+SE++ I T  R +  M V+      +
Sbjct: 184 ENIAYYNFQIAKTETGGDHANDMRDKRELLLNKMSELVNIKTFEREDGQMSVFIGGIAIV 243

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             +    +   + +      +             N    +  G++ A L+ RD V+  +Q
Sbjct: 244 DGSTANSLYAVENDENDGHYDIYWGAHLIDKAQVNITDKISSGRMYAELKARDDVLKGYQ 303

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N LDE A+ LI   ++   +            +        +             QY  N
Sbjct: 304 NTLDEFAKNLILKTNQIHSLGQG-----LKRFSQITSTNGVENPSYKFSEDPGKLQYDIN 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               R     S     +  ++   P   +        +       G      L E
Sbjct: 359 KGVFRITVYNSDGLKTDDFDIEVDPSKDSLNSIIEKISQADGNAGGGIIQAYLSE 413



 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/431 (10%), Positives = 115/431 (26%), Gaps = 15/431 (3%)

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           ++   R+ +     + +   +        +  +            + N        L + 
Sbjct: 160 SIEEVRNRSDENIKEYVKEIN---DLAENIAYYNFQIAKTETGGDHANDMRDKRELLLNK 216

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +       + +     +      +     ++A  +  +  D +        ++      +
Sbjct: 217 MSELVNIKTFEREDGQMSVFIGGIAIVDGSTANSLYAVENDENDGHY----DIYWGAHLI 272

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
                 I  K +S     +   + DVL    + +   +  +    + +     G   F  
Sbjct: 273 DKAQVNITDKISSGRMYAELKARDDVLKGYQNTLDEFAKNLILKTNQIHSLGQGLKRFSQ 332

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           +      E  +           +     V           K        D       + +
Sbjct: 333 ITSTNGVENPSYKFSEDPGKLQYDINKGVFRITVYNSDGLKTDDFDIEVDPSKDSLNSII 392

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFI---ADGIKDLDNKLCQGISETICVNPQYRSN 347
           +++++    +         +      + +          DN                 + 
Sbjct: 393 EKISQADGNAGGGIIQAYLSEGGKLKIQVKDGYTFSFSEDNSNILAALGMYGYFKGTDAK 452

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              L D       F+   K      + I     +   N +FD        VT  ++    
Sbjct: 453 TIELNDIVKNDNSFIATSKTGEPGDNQIALAISNLKFNEVFDEKG-----VTFDQFYTTF 507

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  ++          +   N ++       GV+L EE + LIK +++Y  + + I  
Sbjct: 508 VSQIASDKKQVDTFVDAKKEAVNQLTLKLDEVKGVSLDEEFTNLIKFQKAYEANARFITA 567

Query: 468 TDKMLQTLLEG 478
            D+ML  L+ G
Sbjct: 568 VDEMLDRLING 578


>gi|82544453|ref|YP_408400.1| flagellar hook-associated protein FlgK [Shigella boydii Sb227]
 gi|81245864|gb|ABB66572.1| hook-filament junction protein 1 [Shigella boydii Sb227]
 gi|320173535|gb|EFW48731.1| Flagellar hook-associated protein FlgK [Shigella dysenteriae CDC
           74-1112]
 gi|332094064|gb|EGI99116.1| flagellar hook-associated protein FlgK [Shigella boydii 3594-74]
          Length = 547

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|157159090|ref|YP_001462316.1| flagellar hook-associated protein FlgK [Escherichia coli E24377A]
 gi|209918336|ref|YP_002292420.1| flagellar hook-associated protein FlgK [Escherichia coli SE11]
 gi|218553660|ref|YP_002386573.1| flagellar hook-associated protein FlgK [Escherichia coli IAI1]
 gi|300821137|ref|ZP_07101286.1| flagellar hook-associated protein FlgK [Escherichia coli MS 119-7]
 gi|331676873|ref|ZP_08377569.1| flagellar hook-associated protein FlgK [Escherichia coli H591]
 gi|157081120|gb|ABV20828.1| flagellar hook-associated protein FlgK [Escherichia coli E24377A]
 gi|209911595|dbj|BAG76669.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli
           SE11]
 gi|218360428|emb|CAQ97982.1| flagellar hook-filament junction protein 1 [Escherichia coli IAI1]
 gi|300526436|gb|EFK47505.1| flagellar hook-associated protein FlgK [Escherichia coli MS 119-7]
 gi|323947616|gb|EGB43620.1| flagellar hook-associated protein FlgK [Escherichia coli H120]
 gi|324017414|gb|EGB86633.1| flagellar hook-associated protein FlgK [Escherichia coli MS 117-3]
 gi|331075562|gb|EGI46860.1| flagellar hook-associated protein FlgK [Escherichia coli H591]
          Length = 547

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|288958563|ref|YP_003448904.1| flagellar hook-associated protein 1 [Azospirillum sp. B510]
 gi|288910871|dbj|BAI72360.1| flagellar hook-associated protein 1 [Azospirillum sp. B510]
          Length = 465

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 58/474 (12%), Positives = 137/474 (28%), Gaps = 16/474 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SLL+    A           + +  NI  A++    R      +     T  + R +   
Sbjct: 3   SLLSALQTATASLRAVQTNVSVVSGNIAKANDPTRTRHVAQQPLDGNGQTATSYRRDADE 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +    + A ++          +      +            Y S  + + ++   +    
Sbjct: 63  VLKGQVEALTARESGAATQAGYMRELGGLLRTSGGKPLLNSYASSFQAAWKTLEASPESR 122

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                ++  A+         +  V+ +      +++  ++     L E+  +N+ I    
Sbjct: 123 TAKIELVRAADRFAGEIRRVSDGVETLGRSMQTDLKNSVAATNGLLKEIAALNERIGSGK 182

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                A   +D+RD L+++++  IG+ ++ R +  + ++T  G  L +  P  +  +  +
Sbjct: 183 -DGDAALSAMDRRDQLIKELNGYIGVRSMTRGDGRVALFTGSGMMLLDATPVTLTTDGNS 241

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
               + E+    +    + +                           +L      L   F
Sbjct: 242 VRLSSGEAVDGHVKDGKIGALMSMLRDGSTADPPKPADGEPTAEVIRKLRSQLDGLAQGF 301

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                +       P  F     +    K  +                          K  
Sbjct: 302 -----VGETRPGEPKSFRDAYDEAKPAKSGE----------APAGFFQGKDRFTLAVKPS 346

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
           L + +       L              D      ++ +         G        ++D 
Sbjct: 347 LLDERESVKTSALSPVVRALNATGRQLDADGLKTSDSSYTGMVSAFTGSWATAAKAANDQ 406

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             + +     + E Y    GVNL EE++ L +++ +Y  S +++     M  TL
Sbjct: 407 QGQEKAALQLVDERYHAKTGVNLDEEIATLQQLQTAYAASARILQTVKAMHDTL 460


>gi|256018661|ref|ZP_05432526.1| flagellar hook-associated protein FlgK [Shigella sp. D9]
 gi|332279730|ref|ZP_08392143.1| flagellar hook-filament junction protein 1 [Shigella sp. D9]
 gi|323185795|gb|EFZ71156.1| flagellar hook-associated protein FlgK [Escherichia coli 1357]
 gi|324117347|gb|EGC11254.1| flagellar hook protein FlgK [Escherichia coli E1167]
 gi|332102082|gb|EGJ05428.1| flagellar hook-filament junction protein 1 [Shigella sp. D9]
          Length = 547

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|15639647|ref|NP_219097.1| flagellar hook-associated protein FlgK [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025885|ref|YP_001933657.1| flagellar hook-associated protein FlgK [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322960|gb|AAC65634.1| flagellar hook-associated protein 1 (flgK) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018460|gb|ACD71078.1| flagellar hook-associated protein 1 [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060027|gb|ADD72762.1| flagellar hook-associated protein FlgK [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 625

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 133/423 (31%), Gaps = 28/423 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS  A     +       Q   +   N+ N+    Y R+                     
Sbjct: 1   MSTFASIELGKRALYAHKQSVQTAGHNVSNSSTPGYSRQRVNLDSFEPLYRPDLSRAQLP 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               + VT+ +       + D  + + +   G      ++  L E +  ++  + +    
Sbjct: 61  GQIGQGVTIGSIARLRDQLLDSRIVSQTDEQGYWSTRDAYVRLLEQVY-NEPEDIAVRTR 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           + +  D  +  S         + V+  A+ +    +   R +  IR   + +IE  +  +
Sbjct: 120 LDQFWDGWQELSVYPEARAARQVVLTRAQTLTDAIHHQYRGLVGIRDMLNADIEATVEQV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L+++  +N+ I    A   + +D LD+RD L++ ++  I +   VR+ ++  V  S 
Sbjct: 180 NDLLAKIAQLNEQIVKSKAMGDNPNDLLDRRDTLVESLAHRIEVRVDVRDEDESYVIHSA 239

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G  + +            +          ++  V   S   +    GK+ AL+++RD+ V
Sbjct: 240 GLEVVQGKSYKTLGLVSGTTPEG------YVSVVWKDSGDRAHFSGGKLAALIELRDTDV 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS----ETIC 339
                +LD MA   +   +     A       GL        ++N           +   
Sbjct: 294 RDELRKLDTMAMNFVDLVNNVHRNAMGLNGKTGLDFFKEQYFINNVDGNFDRDGDGQYDS 353

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 S    L     V    +  +    G  ++     D           A       
Sbjct: 354 SYIFRISGAHALDAREQVGLTGVITLSAADGTVEVPYAATDMVADVVARINQANAEVTAY 413

Query: 400 LLE 402
           L +
Sbjct: 414 LDQ 416



 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 95/357 (26%), Gaps = 12/357 (3%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA----IKFKTA 182
              +  ++         +V+      D      +  +         +N         +  
Sbjct: 275 AHFSGGKLAALIELRDTDVRDELRKLDTMAMNFVDLVNNVHRNAMGLNGKTGLDFFKEQY 334

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             ++     D+        S I  IS     +    V  +   TL      D   E   +
Sbjct: 335 FINNVDGNFDRDGDGQYDSSYIFRISGAHALDAREQVGLTGVITL---SAADGTVEVPYA 391

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T         I+                +       +S  P F  +  E +   +  ++
Sbjct: 392 ATDMVADVVARINQANAEVTAYLDQNHKLVLKATTAHNSDNPDFVIRHVEDSGRFLAGYA 451

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                +G                        +S           NP+ L D  SV+  + 
Sbjct: 452 GLLAASGAEGAFDWQRADAIAALDQAGAQHAVSPIAHPAGWMELNPAVLSDVYSVAAGYP 511

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                     +       +     + +    I    T  E+       +      +    
Sbjct: 512 SAEGLPHAGDNR-----AALAIASLRNSPVMIGNRHTFDEFFAEVTTAIGLKGEQAERSM 566

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                +   +++    T GVN+ EEL+ +IK +  YN S + I   ++ML T++  +
Sbjct: 567 QMHAAILKELTDMRDATSGVNIDEELADIIKFQHGYNASARFIAAVNEMLDTVINRM 623


>gi|194438121|ref|ZP_03070214.1| flagellar hook-associated protein FlgK [Escherichia coli 101-1]
 gi|253773894|ref|YP_003036725.1| flagellar hook-associated protein FlgK [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161188|ref|YP_003044296.1| flagellar hook-associated protein FlgK [Escherichia coli B str.
           REL606]
 gi|300928366|ref|ZP_07143900.1| flagellar hook-associated protein FlgK [Escherichia coli MS 187-1]
 gi|194423057|gb|EDX39051.1| flagellar hook-associated protein FlgK [Escherichia coli 101-1]
 gi|242376886|emb|CAQ31603.1| flagellar biosynthesis, hook-filament junction protein 1, subunit
           of Flagellum [Escherichia coli BL21(DE3)]
 gi|253324938|gb|ACT29540.1| flagellar hook-associated protein FlgK [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973089|gb|ACT38760.1| flagellar hook-associated protein K [Escherichia coli B str.
           REL606]
 gi|253977303|gb|ACT42973.1| flagellar hook-associated protein K [Escherichia coli BL21(DE3)]
 gi|300463624|gb|EFK27117.1| flagellar hook-associated protein FlgK [Escherichia coli MS 187-1]
 gi|323962681|gb|EGB58259.1| flagellar hook protein FlgK [Escherichia coli H489]
 gi|323973329|gb|EGB68518.1| flagellar hook protein FlgK [Escherichia coli TA007]
 gi|332342628|gb|AEE55962.1| flagellar hook-associated protein FlgK [Escherichia coli UMNK88]
          Length = 547

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|16129045|ref|NP_415600.1| flagellar hook-filament junction protein 1 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89107928|ref|AP_001708.1| flagellar hook-filament junction protein 1 [Escherichia coli str.
           K-12 substr. W3110]
 gi|170080733|ref|YP_001730053.1| flagellar hook-filament junction protein 1 [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238900336|ref|YP_002926132.1| flagellar hook-filament junction protein 1 [Escherichia coli
           BW2952]
 gi|256023220|ref|ZP_05437085.1| flagellar hook-associated protein FlgK [Escherichia sp. 4_1_40B]
 gi|307137717|ref|ZP_07497073.1| flagellar hook-associated protein FlgK [Escherichia coli H736]
 gi|331641626|ref|ZP_08342761.1| flagellar hook-associated protein FlgK [Escherichia coli H736]
 gi|2506419|sp|P33235|FLGK_ECOLI RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|1651528|dbj|BAA35891.1| flagellar hook-filament junction protein 1 [Escherichia coli str.
           K12 substr. W3110]
 gi|1787323|gb|AAC74166.1| flagellar hook-filament junction protein 1 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169888568|gb|ACB02275.1| flagellar hook-filament junction protein 1 [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238861110|gb|ACR63108.1| flagellar hook-filament junction protein 1 [Escherichia coli
           BW2952]
 gi|260449778|gb|ACX40200.1| flagellar hook-associated protein FlgK [Escherichia coli DH1]
 gi|315135714|dbj|BAJ42873.1| flagellar hook-associated protein FlgK [Escherichia coli DH1]
 gi|323937822|gb|EGB34086.1| flagellar hook-associated protein FlgK [Escherichia coli E1520]
 gi|331038424|gb|EGI10644.1| flagellar hook-associated protein FlgK [Escherichia coli H736]
          Length = 547

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|315296713|gb|EFU56008.1| flagellar hook-associated protein FlgK [Escherichia coli MS 16-3]
          Length = 547

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   S    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGSGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|260437430|ref|ZP_05791246.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM
           2876]
 gi|292810062|gb|EFF69267.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM
           2876]
          Length = 543

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 67/537 (12%), Positives = 159/537 (29%), Gaps = 63/537 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPENV 50
                    +    ++    +   NI N + K Y ++ +                     
Sbjct: 4   TFFGLTIGSSGLFASNAAINTTAHNISNINTKGYTKQVSNQQAAESIRVYQSYGTVGTGT 63

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V++      + +D      ++  GQ   LQ++  L E    D+   N  T     L  +
Sbjct: 64  AVISIDQLRSSYYDTKYRHANTNCGQYNSLQNYTTLVEDYL-DEFNLNGFTKEYQNLFSA 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +    ++ +  +     ++ A+ +   FNT +     ++  A+ E++  ++++     ++
Sbjct: 123 INDLQRDPTSAVGRNQFLNYAQSICDYFNTLSTNFSIVQRQANDEVKTTVNSINTISEQI 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV----RNNNDMVVYTSDGTT 226
             +N  I     +   A+D  DQR +L+ ++S  I  +           +  VY +    
Sbjct: 183 VSLNKQINVIEINGGHANDLRDQRALLVDELSGYINTTVSEKEIGNGATEFKVYVNGQEL 242

Query: 227 LFETVPRDINFEKMNS----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS- 281
           +       +  E   +         +          +  N  S+   G +KA + +RD  
Sbjct: 243 VDMYNCNKLLLETRETGKRRNASDLDGLYDITWNNGLGFNMYSSSLTGSLKAAIDVRDGC 302

Query: 282 ---------------VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
                           +     ++  +  +    ++       + + V            
Sbjct: 303 NEAYEVLGMADKDGNYLKDADGKIINVQDITEAEYNGYVAAGYSKKMVTVGETRFNSSYK 362

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL--------WNVKNLAGYPDLINHY 378
                Q              N +       V+ K +         +    AG   +    
Sbjct: 363 GIPYYQEEINKFIQKISDVFNETISGGNKRVTDKPVEDLFVSRYGDSYITAGNVTINQEI 422

Query: 379 CDSFNK------------------NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
            +  +K                    +      +  N T   +  + +     +      
Sbjct: 423 LNDVSKLPYSYDSTKGSANVDMVEELLAIKNKIVINNGTFESFLNSIVSVCSIDAGRVKT 482

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  +   I     +  GV+  EE   L+K + +YN+S+K+I    ++   L+E
Sbjct: 483 FQATYSNIKETIDNQRMSVSGVDEDEEGIDLVKFKNAYNLSSKVISVMQEIYDKLIE 539


>gi|26247222|ref|NP_753262.1| flagellar hook-associated protein FlgK [Escherichia coli CFT073]
 gi|227886560|ref|ZP_04004365.1| flagellar hook-associated protein FlgK [Escherichia coli 83972]
 gi|300974386|ref|ZP_07172598.1| flagellar hook-associated protein FlgK [Escherichia coli MS 45-1]
 gi|26107623|gb|AAN79822.1|AE016759_96 Flagellar hook-associated protein 1 [Escherichia coli CFT073]
 gi|227836764|gb|EEJ47230.1| flagellar hook-associated protein FlgK [Escherichia coli 83972]
 gi|300410629|gb|EFJ94167.1| flagellar hook-associated protein FlgK [Escherichia coli MS 45-1]
 gi|307553084|gb|ADN45859.1| flagellar hook-associated protein FlgK [Escherichia coli ABU 83972]
 gi|315291060|gb|EFU50423.1| flagellar hook-associated protein FlgK [Escherichia coli MS 153-1]
          Length = 547

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    I+    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|20086976|gb|AAM10736.1| flagella-associated protein K [Leptospira interrogans serovar lai]
          Length = 543

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 130/390 (33%), Gaps = 25/390 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +     +       Q   +   NI NADNK+Y R+    T                 
Sbjct: 3   STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V + +      N  D  +   S           +    E +  ++    +    +
Sbjct: 63  QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARIEYLYQLETVF-NEPNGTTLRTLM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            K   S E  +    ++     V++ A  +        R++ ++R  A++EIE +  +L 
Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKTYHLN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +  +N+ I    A     +D  D+RD LLQ++S ++ ++    + ++++V+    
Sbjct: 182 TIAENIRTLNERIGKSEALGDRPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       I+     S           +D    ++     + KG+++ L+++R  V+ 
Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLFWSATGDPVLLRKGRLQGLIEVRGKVIR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +Q+D ++  ++ + +E                 +      N   +  S     N   
Sbjct: 295 EKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFNIRSLSINTFGEYDSNGDGQNDVT 354

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                  R+     +    N        D+
Sbjct: 355 AIFRVTGRNTVDPDRPIGINGTITFHQSDV 384


>gi|300922608|ref|ZP_07138708.1| flagellar hook-associated protein FlgK [Escherichia coli MS 182-1]
 gi|301328548|ref|ZP_07221609.1| flagellar hook-associated protein FlgK [Escherichia coli MS 78-1]
 gi|300421085|gb|EFK04396.1| flagellar hook-associated protein FlgK [Escherichia coli MS 182-1]
 gi|300844940|gb|EFK72700.1| flagellar hook-associated protein FlgK [Escherichia coli MS 78-1]
          Length = 547

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|209547529|ref|YP_002279447.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538773|gb|ACI58707.1| flagellar hook-associated protein FlgK [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 486

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 162/485 (33%), Positives = 259/485 (53%), Gaps = 8/485 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N  Q+I NN  QQ + +  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSGLNSVQSIFNNTGQQSSVVSTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S    Q+ L +     + +   + Y  SP+ Y+S  + +L++++ + S 
Sbjct: 61  TALLAQYLQSNSKDSAQQTLVTGLESLKSLMGGNDYETSPSTYLSAFQQALQTFATSPSS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               ++ +  A ++  + NT++  VQ IRADAD EI  ++S+L   LS+    N+A+K  
Sbjct: 121 TTAAQSAVTAARDLANSLNTASDGVQSIRADADAEIATQVSSLNTLLSQFETANNAVKLA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+ LL++IS I+G++T VR+NNDM +YTSDGT LFETVPR + +   
Sbjct: 181 TATGADTSSALDEREKLLKQISSIVGVTTAVRDNNDMALYTSDGTVLFETVPRTVTYVPT 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y   +E N ++IDGV + + +GS     G ++ALLQ+RD + P FQ QLDE+A+ L+ 
Sbjct: 241 TTYVAGTEGNSVYIDGVALDAGEGSTTSASGGLQALLQLRDDIAPTFQAQLDEIAKSLVQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353
           +FSE D              +       +           IS  + V      + + LRD
Sbjct: 301 AFSETDGSTSAPGLFVWTTASGTSGGTPSDSDDITGIASSISVNLAVVTSEGGDATKLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G++S     N    +G+ D ++    +  K   F   AG++T  +L++YA +SIGWLE+
Sbjct: 361 -GTISGITDLNSAGDSGFSDNLDALYTALTKQRSFSSDAGLSTTQSLMDYASSSIGWLEQ 419

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            RSD+      +    +   E+YSN  GVNL EEL+ L+ +EQSY  + K++   D+M +
Sbjct: 420 YRSDATSASENTTAALSRSDEAYSNEAGVNLDEELTLLLDIEQSYKAATKILNVIDEMFK 479

Query: 474 TLLEG 478
           +LL+ 
Sbjct: 480 SLLDI 484


>gi|297617147|ref|YP_003702306.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144984|gb|ADI01741.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 487

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/493 (9%), Positives = 115/493 (23%), Gaps = 21/493 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52
           ++       +       +   I  NI N +   Y +   +             +P     
Sbjct: 1   MMRSMYAGVSGLRTHQLRMDVIGNNIANVNTVGYKKSRAIFKDAFYQAIRGGSAPTGARG 60

Query: 53  VTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T          +    + A   +                    +               
Sbjct: 61  GTNPQAIGLGVQLSSVDVIATPGSAQTTGKNTDLAIDGNGYFILESGGERYYTRAGAFDF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            +           +   +    +      ++S +     + D    +     +  +    
Sbjct: 121 DVLGNYVASGGLHVMGYMPSKDDSGNWITDSSGKR----KIDITTGLVPIDISALQSTEP 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                        S  +     D+         +        +   D +         FE
Sbjct: 177 KATTLIRFSGNFDSTLEPEYVWDETSSSFVDNPDGADSKITSKEFYDTLGNKRVQYFKFE 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            V    N +  N  T+      +         N  ++  K +   L       +   ++ 
Sbjct: 237 KVMERDNVDIGNGETMNGSIWRVRASSDPDCPNPTASDSKSEDYYLFFDEKGKLIRAKHD 296

Query: 290 LDEMARVLIGSFSEKDPIAG--NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                                  +++     I     +      Q I+       QY + 
Sbjct: 297 NGTTGASSSDWQEPDVTAMTFAATDDPSSQSITIHYVNNGVPTQQPITLNFSYLTQYNAT 356

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +   +      K       +     ++  Y +    N     +A       LL    N 
Sbjct: 357 FTGWAEYQDGYTKGDLRSITIDQNGVILGVYSNGITDNLARVALAVFQNPAGLLAKGGNL 416

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +   N S    +    +     I         V+L EE + +I  ++ +  ++++I  
Sbjct: 417 --FQVSNNSGDPKVGAPGEEAMGAILPGSLEMSNVDLSEEFTDMIVTQRGFQANSRIITT 474

Query: 468 TDKMLQTLLEGVK 480
           +D+MLQ L+   +
Sbjct: 475 SDEMLQELVNLKR 487


>gi|300902473|ref|ZP_07120455.1| flagellar hook-associated protein FlgK [Escherichia coli MS 84-1]
 gi|301304979|ref|ZP_07211081.1| flagellar hook-associated protein FlgK [Escherichia coli MS 124-1]
 gi|300405505|gb|EFJ89043.1| flagellar hook-associated protein FlgK [Escherichia coli MS 84-1]
 gi|300839697|gb|EFK67457.1| flagellar hook-associated protein FlgK [Escherichia coli MS 124-1]
 gi|315253883|gb|EFU33851.1| flagellar hook-associated protein FlgK [Escherichia coli MS 85-1]
          Length = 547

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +      +A  +       + 
Sbjct: 299 GQLVLAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|239628960|ref|ZP_04671991.1| flagellar hook-protein FlgK [Clostridiales bacterium 1_7_47_FAA]
 gi|239519106|gb|EEQ58972.1| flagellar hook-protein FlgK [Clostridiales bacterium 1_7_47FAA]
          Length = 489

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/501 (14%), Positives = 158/501 (31%), Gaps = 44/501 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
                  A+       +    +  NI N + K Y R+   +                   
Sbjct: 4   TFMGLETAKRGIMVNQKAIDIVGNNISNVNTKGYTRQRLDSVSVNVYGSSQFNYSSIPLA 63

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYIS 105
            + V             D       S +G      +     E + +D +         ++
Sbjct: 64  GQGVDAKGVAQIRNPYLDAKFREQYSDVGYFDQKAAILDQIEGIISDPEVEGTGIKSALT 123

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
            L  SL  +S+N  ++     V+   + V Q  N     +Q +      +  + + ++  
Sbjct: 124 ALSQSLADFSQNPYQETNANIVMHAFKAVTQVLNEYDANLQTLMEQTKNDFSIAVQDINT 183

Query: 166 FLSELTVVNDAIKFKTASKHD-------AHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            L++L+ +N +I  +  +  D        +D LDQR+ +L  +S    +     +   + 
Sbjct: 184 KLNQLSELNKSIAHEIFANSDYDGVNYGPNDLLDQRNTILDDLSRYGSVQVTNLDGGGVQ 243

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           V   +G  + +        +++   +  +       +G   +   G+      +      
Sbjct: 244 VKF-NGKVVVDVSGASYTNDQLMIGSDGTSLTW-NSNGKTANLGSGAIKGFTDMLTGNDS 301

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             S +P +QNQLD  A+ L   F+ K        + P            +      +  I
Sbjct: 302 IMSGIPYYQNQLDNFAKTLADVFNNKV-----HADDPDFPDKYKELLSGDGNGNITAGNI 356

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            ++ ++  + S++             +++     DL N            D   G   + 
Sbjct: 357 SISDKWAEDSSYI-------------IRDKNPDGDLDNTDILDMKAALEQDFNFGSGFSG 403

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           T  E+   +   L      +      S  +   +        GV+L EE   ++   ++Y
Sbjct: 404 TFSEFITKTTNTLGSEIKTNSARMQASLSIAESVESERMGVSGVSLNEEGINMMTYNKAY 463

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
               +L+   D+ L  ++  +
Sbjct: 464 QALGRLMTTMDEQLDMIINKM 484


>gi|225166310|ref|ZP_03727999.1| flagellar hook-associated protein FlgK [Opitutaceae bacterium TAV2]
 gi|224799447|gb|EEG17987.1| flagellar hook-associated protein FlgK [Opitutaceae bacterium TAV2]
          Length = 469

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 168/495 (33%), Gaps = 49/495 (9%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------N 49
           MS LLA  + A N  N  S+          N +N++Y R+  + +               
Sbjct: 1   MSGLLASLSHASNALNAHSRAIEVTSNIFFNINNEDYSRQRVVYSSRGTVLTAHGVETLG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------NNSPTHY 103
           +   T +     + DK +   ++        ++  A  + +  +          N  +  
Sbjct: 61  IEARTVQQLRDALLDKQVTRETAKTASITAERAAYARVQTLLGETIDTSSDTRGNGLSAA 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +S   +S ++ + + ++    +T++ NA  +V    T   ++ + + D D  I  +I  +
Sbjct: 121 LSDTFNSFQALAASPTDQGEKQTLLANAAILVDRIRTLDADLAQAQTDLDDSINQDIGEV 180

Query: 164 RRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +  L+++T +N  I     +    A    D+R   L+ +++ I   T     +   +   
Sbjct: 181 QDLLAKITELNQQIARFEINDPGTALTLRDERQAALEDLAQNISFETRTSTAHPGQIDIY 240

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
              T    VP        +    T   +P              A+  G I   L  RD  
Sbjct: 241 THDTDGNEVP---LITAGSPPPATLTYDPATGTLSTDGGATTLALTGGTIHGSLAARDGA 297

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   ++ +D +AR LI S ++      +  +                             
Sbjct: 298 IKTLRDNIDTLARQLITSVNDAYNPDSDPGHDFFTGT----------------------- 334

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                       G             AG  DLI    +  N  F     A I+   TL  
Sbjct: 335 ---GAGDIALAPGLTVATLRTTATGGAGDSDLITAVANLINTRFSTADGALIDG--TLTA 389

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +  +++    +  S +   H     +   I E   +T GV+L EE   L+  +++Y  S 
Sbjct: 390 HYTSAVSHFGQAVSSADTRHQSQYSIETLIREQRDSTSGVSLDEETINLVNYQRAYQASA 449

Query: 463 KLIMFTDKMLQTLLE 477
           ++I   D +L T++ 
Sbjct: 450 RVITILDDLLNTVVN 464


>gi|238751767|ref|ZP_04613255.1| hypothetical protein yrohd0001_35400 [Yersinia rohdei ATCC 43380]
 gi|238710038|gb|EEQ02268.1| hypothetical protein yrohd0001_35400 [Yersinia rohdei ATCC 43380]
          Length = 549

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/550 (12%), Positives = 163/550 (29%), Gaps = 80/550 (14%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56
            N A +  + A    +++  NI N     Y R++ + T +             VTV    
Sbjct: 1   MNTAMSGLSAAQYGLSTVSNNISNYQVAGYNRQNAIFTQNGGTLSSAGFIGNGVTVTGIN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            E  +     L    +            +  + + A+   +N+ +  +     +L++   
Sbjct: 61  REYNSFITNQLRTAQTQSSGLTTYYQQVSQIDNLLAN--SSNNLSTTMQAFFSNLQNLVS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +D   KTV+  AE +V  F  + + ++ +    +++I   ++ +  +  ++  +ND 
Sbjct: 119 NADDDAARKTVLGKAEGLVNQFQNADQYLRDMDTGVNQKITESVAKINNYAEQIAGLNDQ 178

Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           I     +S  + +  LDQRD L+ ++++I+G++   ++ +   V  ++G  L +      
Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTMSQQDGDAYNVSFANGLPLVQGASSYK 238

Query: 236 NFEKMNSYTVTS--------ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                +S   T             + +D   +++       K + +AL   R+ +  +  
Sbjct: 239 VEAIPSSSDATRLAVGYKYGSGTVLEVDESRLTTGSLGGTLKFRSEALDNARNQLGQLAL 298

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR-- 345
              D         F        N  N     +    K+  + +                 
Sbjct: 299 VMADSFNTQHKAGFDANGEDGTNFFNFADPVVVKNTKNEGDAVLTVAYTNTSKVQASDYS 358

Query: 346 ----------------------------SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                                        N + L   G                   +  
Sbjct: 359 VEFDGTDWQVTRLSDKAKVSADVVKDTSGNVTGLNFDGVAVSINNGTTGAQIKDKFTVKT 418

Query: 378 YCDSFNKNFIFDPVAG-----------------------------INTNVTLLEYARNSI 408
             +      +    +                              +    T        +
Sbjct: 419 VSNVAANLEVAISDSSKIAAAGKKDGGESDNVNAQALLDLQTKKLVGGKATFSGAYAGLV 478

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    S +         +   ++    +  GVNL EE   L + +Q Y  + ++I   
Sbjct: 479 STVGNQTSTAKVNSTAKASIVTQLTAEQQSVSGVNLDEEYGDLQRFQQYYLANAQVIQTA 538

Query: 469 DKMLQTLLEG 478
             +   LL+ 
Sbjct: 539 STLFNALLDL 548


>gi|218704490|ref|YP_002412009.1| flagellar hook-associated protein FlgK [Escherichia coli UMN026]
 gi|293404366|ref|ZP_06648360.1| flgK [Escherichia coli FVEC1412]
 gi|298380146|ref|ZP_06989751.1| flagellar hook-associated protein 1 [Escherichia coli FVEC1302]
 gi|300899601|ref|ZP_07117840.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1]
 gi|218431587|emb|CAR12466.1| flagellar hook-filament junction protein 1 [Escherichia coli
           UMN026]
 gi|291428952|gb|EFF01977.1| flgK [Escherichia coli FVEC1412]
 gi|298279844|gb|EFI21352.1| flagellar hook-associated protein 1 [Escherichia coli FVEC1302]
 gi|300356872|gb|EFJ72742.1| flagellar hook-associated protein FlgK [Escherichia coli MS 198-1]
          Length = 547

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 159/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+ T               V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMTQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +              +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTLTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASAEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|320179217|gb|EFW54175.1| Flagellar hook-associated protein FlgK [Shigella boydii ATCC 9905]
 gi|332089154|gb|EGI94263.1| flagellar hook-associated protein FlgK [Shigella boydii 5216-82]
          Length = 547

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAKDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC- 379
                +     Q     +  N  +   P           +  +           +     
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 380 -----------------------------DSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                        +      +      +    +  +   + +  
Sbjct: 419 TIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|296534169|ref|ZP_06896661.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC
           49957]
 gi|296265505|gb|EFH11638.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC
           49957]
          Length = 500

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/500 (14%), Positives = 168/500 (33%), Gaps = 20/500 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSEN 59
           MSL +    A +     ++Q     +NI NAD   Y R+       +   V     +   
Sbjct: 1   MSLSSALLTATSGLRLTTRQLEQSAQNIANADTAGYTRKTVSGEAVTTGGVRTGEAQRAV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                       SA     L  +  +    +  D          IS L D+  + + + +
Sbjct: 61  DTALRNQALKARSAEAGASLANATLSPLAGLQGDTSDGRDTAGLISALNDAFTALAASPA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +      V+  AE++    NT++  +   R      +  ++      + ++  ++  I+ 
Sbjct: 121 DSSAMSGVLRAAEDIASQLNTASEAIGTTRQAVQDGLVADVDAANGLIRQIGALDKQIRA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
           + A+  DA    DQRD  + ++S+ +G+ +    +  + +  + G+ L           +
Sbjct: 181 EAAAGRDAAALKDQRDTAIGQLSDYLGVKSTEGADGGVTLTLASGSVLPLDAESGPLGLE 240

Query: 240 MNSYTVTS--ESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARV 296
             + T  S   +    + G+ ++    +     G++ A   +RD  +P  Q +LD+ A  
Sbjct: 241 RATVTPGSYHGTPAGTLPGLTLNGQAVNGAALGGRLGAGFTLRDQTLPTMQAELDQTAAT 300

Query: 297 LIGSFSEK------DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           L G   E+      D              A        ++    +             + 
Sbjct: 301 LAGRLDEQGLRLFTDSDGSAPPAAGTAAGAAQTVGFAARMTVNAAVAEAPRLLRDGTHAT 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL--------- 401
                + +         L+           +        P +G+    TL          
Sbjct: 361 ADFTPNPAGGPSGFTTLLSRVSQYSFGAEKAAGVPHTAIPTSGLGPGGTLSSNFAAPQRI 420

Query: 402 -EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +YA + +G      + +      +    +++      + GV+   EL+ ++ ++ +Y+ 
Sbjct: 421 IDYAASVVGSQAGTIAAAESAAEGATTQRSYLDGLVQKSEGVDTDAELANMVALQNAYSA 480

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           + +++     M   LL+ V+
Sbjct: 481 NARVMSAVQSMWDALLDAVR 500


>gi|260867445|ref|YP_003233847.1| flagellar hook-filament junction protein FlgK [Escherichia coli
           O111:H- str. 11128]
 gi|257763801|dbj|BAI35296.1| flagellar hook-filament junction protein FlgK [Escherichia coli
           O111:H- str. 11128]
          Length = 547

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGALGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +      +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|260854565|ref|YP_003228456.1| flagellar hook-filament junction protein FlgK [Escherichia coli
           O26:H11 str. 11368]
 gi|257753214|dbj|BAI24716.1| flagellar hook-filament junction protein FlgK [Escherichia coli
           O26:H11 str. 11368]
 gi|323156889|gb|EFZ43023.1| flagellar hook-associated protein FlgK [Escherichia coli EPECa14]
          Length = 547

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 158/548 (28%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +      +A  +       + 
Sbjct: 299 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|332284025|ref|YP_004415936.1| flagellar hook-associated protein FlgK [Pusillimonas sp. T7-7]
 gi|330427978|gb|AEC19312.1| flagellar hook-associated protein FlgK [Pusillimonas sp. T7-7]
          Length = 553

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/550 (13%), Positives = 159/550 (28%), Gaps = 82/550 (14%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57
           N      N A  +  +   NI NA  + Y R+  ++  +             V  VT + 
Sbjct: 5   NLGLTGLNAAQNRLQTAGHNINNAATEGYNRQSVLSATAGASATSAGYIGRGVQAVTVQR 64

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
              +   + L +  +         S       + AD       T  + K  D +++ +  
Sbjct: 65  AYDSFLFRQLTSAQTTGASLAAYGSEITQINNLFAD--RTVGITPALQKFFDGIQAVASA 122

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            ++    + ++  A  +V   N +   +   R + + +I   ++ +  +   +  +N+ I
Sbjct: 123 PADSAARQELLGRASSLVGQINDNNAFLDSQRGNINTQITTVVTQINSYAERIRDLNNQI 182

Query: 178 KFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
               A+      +D LDQRD L+ ++ +++G+  I + + +  +   +G  L        
Sbjct: 183 TTARATASQHEPNDLLDQRDQLVAELGQLVGVKVIEQ-DGNFNLTVGNGQILLGGDTVFP 241

Query: 236 NFEKMNSYTVTSESNPIFI---DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
              + ++                GVV      S++  G +  LL  R   +   QN+L  
Sbjct: 242 LHAQPSADDPARTVVAYTAPVNGGVVTVELADSSIKGGALGGLLDYRREALDSVQNKLGR 301

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIA-------------------------------- 320
           +A  L  + +       +   V G                                    
Sbjct: 302 LAVGLATAINAVHEKGEDLNGVGGGDFFTLGEITPMPGAGNSGSGQLSVQFTDAKQLTDQ 361

Query: 321 ----------DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
                       +  L N      +++             LR   S       +   +  
Sbjct: 362 DYRIERSAGGYTVTSLPNGTVSTFADSGDPANPTVIEVDGLRFDVSGGTPDTGDSWLVQP 421

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNV----------------------TLLEYARNSI 408
                 +   + +           +                         +L E     +
Sbjct: 422 TRAAAANLSLAIDDPAGIAVATPGSGASNGDVGLELAGLQTAKVLGNGSMSLNEAFSQIV 481

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +      +         +      +     GVNL EE   L + ++ +  ++KLI  +
Sbjct: 482 NHVGVMTQQNSTSAKAQATLIQQNYAAQQAVSGVNLNEEYVRLDQYQEQFRAASKLIDVS 541

Query: 469 DKMLQTLLEG 478
             +  TLL  
Sbjct: 542 SSLFDTLLGL 551


>gi|323490135|ref|ZP_08095355.1| flagellar hook-associated protein FlgK [Planococcus donghaensis
           MPA1U2]
 gi|323396183|gb|EGA89009.1| flagellar hook-associated protein FlgK [Planococcus donghaensis
           MPA1U2]
          Length = 422

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/494 (12%), Positives = 156/494 (31%), Gaps = 92/494 (18%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S        +   +      ++  +NI N + K Y R+   ++ S               
Sbjct: 3   STFHGLELGKRGLSVGQASLSTTGQNIANVNTKGYSRQQVNSSASPSLSVWTAQGANTGQ 62

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               VT+ +         D+    HS  +GQ +  Q+     E +  ++  ++  +  ++
Sbjct: 63  LGTGVTIDSITRVRDRFLDQQFRDHSETLGQWQAKQTTLDRLETI-VNEPSDSGLSSAMN 121

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
            L  + +  +           V + A+  V+   +  + +  ++++  ++ +  ++    
Sbjct: 122 SLNSAWQDLANEPDSLSAQAIVKERAQGFVEVAQSMNKSMTNLKSELTQQTQDAVAEANG 181

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
           +L ++  +N +I     + + ++D  D+RD L++ +S+++ +    +++    +  S   
Sbjct: 182 YLKQIAELNKSIVR---NGNQSNDLKDKRDALVEDLSKLMAVKVDEKSDGSYSISLSSNK 238

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                           +     + + I +D V            GK+  L    D     
Sbjct: 239 ---------------QALVAGEKVSEIDVDSVNADPKSY----GGKLAGLGASMD-SAVH 278

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           +Q++L  + +    + +       +                                   
Sbjct: 279 YQDKLISVVKNFAQANTMTKTGGADQ---------------------------------- 304

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                +     +L  +Y     K          +      E   
Sbjct: 305 --------------ALFIGDADNFNLSELKVNYAAKPLKQPAAPDKPSEDAQSYFRELVS 350

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
                 +   S   +     Q           +  GV+L EE++ L+K + SYN + +L+
Sbjct: 351 ELGAESQAAISSVTNHEATLQAT----ENRRQSVTGVSLDEEMANLVKYQHSYNAAARLV 406

Query: 466 MFTDKMLQTLLEGV 479
             TD+ML T++  +
Sbjct: 407 SMTDQMLDTIINRM 420


>gi|45659268|ref|YP_003354.1| flagellar hook-associated protein FlgK [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45602514|gb|AAS71991.1| flagellar hook-associated protein 1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 636

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 135/412 (32%), Gaps = 30/412 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +     +       Q   +   NI NADNK+Y R+    T                 
Sbjct: 3   STFSGLEIGKRGLTAHQQALQTTGHNISNADNKHYARQRVTMTAMDPLYDPSLNRANLPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V + +      N  D  +   S           +    E +  ++    +    +
Sbjct: 63  QIGQGVEIASIERIRDNFIDDRIIETSGNKDYWAARNEYLYQLETVF-NEPNGTTLRTLM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            K   S E  +    ++     V++ A  +        R++ ++R  A++EIE +  +L 
Sbjct: 122 DKFWSSWEDLANYPEDNAHRSVVLEKANGLGSRTEDVYRKLAQLRDQANREIETKTYHLN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +  +N+ I    A     +D  D+RD LLQ++S ++ ++    + ++++V+    
Sbjct: 182 TIAENIRTLNERIGKSEALGDRPNDLYDKRDALLQELSSLVDVTIGRSDEDELMVFIGQQ 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       I+     S           +D    ++     + KG+++ L+++RD V+ 
Sbjct: 242 ILVQGNKANKIDIIGNPSKD-------GLLDLFWSATGDPVLLRKGRLQGLIEVRDKVIR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +Q+D ++  ++ + +E                 +      N   +  S         
Sbjct: 295 EKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFNIRSLSINTFGEYDSNG-----DG 349

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           +++ + +      +         + G                 +     +N 
Sbjct: 350 QNDVTAIFRVTGRNTVDPDRPIGINGTITFHQSDAKESPILIPYSSNDTLNG 401



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/424 (11%), Positives = 126/424 (29%), Gaps = 13/424 (3%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D +L   SS +         + L   +        +  + I  + +  +    +L     
Sbjct: 212 DALLQELSSLVDVTIGRSDEDELMVFIGQQILVQGNKANKIDIIGNPSKDGLLDLFWSAT 271

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK--- 180
           G  V+     +        + +++     D      +  +     +   +N         
Sbjct: 272 GDPVLLRKGRLQGLIEVRDKVIREKIDQVDALSINVMDAVNEIHKDGFGINGNTNQSFFN 331

Query: 181 -TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             +   +     D        ++ I  ++     + D  +  +   T  ++  ++     
Sbjct: 332 IRSLSINTFGEYDSNGDGQNDVTAIFRVTGRNTVDPDRPIGINGTITFHQSDAKESPILI 391

Query: 240 MNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             S   T       I+    GVV   N  + +      A      + +        ++  
Sbjct: 392 PYSSNDTLNGIIKKINASRSGVVAYMNHDNQLALKATVADDHPNKNFILRHIEDSGDLLV 451

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS--ETICVNPQYRSNPSFLRD 353
            + G      P         G      ++  D  L           V     +N S +  
Sbjct: 452 GMTGILMASGPSGAYDYRRLGEINKLQVRSEDVTLTPHFHPASHFRVADSIANNVSNIAA 511

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  +  G+ D  N    +   + + +    ++ + T  ++    I  L  
Sbjct: 512 ARGKDVGGTGDYNSPGGHKDGRNALMVA---SALRNSPVMVDYSKTTDDFYNTLISKLGT 568

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
              ++         +   +     + +GVNL EE++ +++ + +YN S K+I   +++L 
Sbjct: 569 EAREAKQEFGIQNDLMTELENMRQSVMGVNLDEEMANMVQFQHAYNASAKMINTMNEILD 628

Query: 474 TLLE 477
           T++ 
Sbjct: 629 TIIN 632


>gi|307546962|ref|YP_003899441.1| flagellar hook-associated protein FlgK [Halomonas elongata DSM
           2581]
 gi|307218986|emb|CBV44256.1| flagellar hook-associated protein FlgK [Halomonas elongata DSM
           2581]
          Length = 555

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 131/408 (32%), Gaps = 8/408 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--TISPENVTVVTQRSE 58
           MS+ +      +  N A    ++   NI N     Y R   +   + S   V V   + +
Sbjct: 1   MSIFS---TGLSGLNAAQNALSTTSNNISNVFTPGYNREVAILGESASGGGVQVNDIQRQ 57

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   L+A +S         +     + + AD+         +     S+E  + + 
Sbjct: 58  FDRYVADQLNAATSESSALETYGNQVEQIDSLLADE--QAGLAPLMQDFFSSMEDLASSP 115

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           ++    + V+ +A+ +   F +    +Q ++   + +I  E++ +     +L  +N  I 
Sbjct: 116 ADPAARQGVLGSADTLSAQFRSFDGYLQDMQEGINGQIRDEVTQINNATEQLAGINREIS 175

Query: 179 FKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              A      +  L+QRD L+ +++E +G+   V++     V   +G  L          
Sbjct: 176 LARARDGEAPNGLLNQRDQLVHELNERLGVRLDVQDGKAYNVSLPNGQPLVAGSRSFELR 235

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +              G  + +   +AV  G +  L+  R   +   QNQ+ +MA  L
Sbjct: 236 AIDSPDDPQRTVLGYRNSGGNIVAIDENAVTGGSLGGLMSFRAETLDKTQNQIGQMAVSL 295

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +F+ +     + +   G       +                   + S           
Sbjct: 296 ATAFNAQHAEGVDLQGEAGGDFFSIGQPRTYAAADNPGGAEITQASFDSENIDRLRASDY 355

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           + +   +  +   +           +   +     G + +   L +  
Sbjct: 356 TVRVTDSESDPPAFEVRRRDTGQVLDAAEVTFNDPGNDGSDATLSFGG 403


>gi|33596145|ref|NP_883788.1| flagellar hook-associated protein FlgK [Bordetella parapertussis
           12822]
 gi|33601547|ref|NP_889107.1| flagellar hook-associated protein FlgK [Bordetella bronchiseptica
           RB50]
 gi|33573148|emb|CAE36796.1| flagellar hook-associated protein 1 [Bordetella parapertussis]
 gi|33575983|emb|CAE33062.1| flagellar hook-associated protein 1 [Bordetella bronchiseptica
           RB50]
          Length = 548

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/549 (14%), Positives = 160/549 (29%), Gaps = 78/549 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            ++N A    N +     +   NI NA    Y R+  +T+ +             V V T
Sbjct: 2   NLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
              +  +   + L     +  Q     +  +    +  D       T  ++ L  S  + 
Sbjct: 62  VTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGD--RTVGITPALAGLFTSTNAA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +   +I  A  +V   NT+ +E++  R   + +I   +  +  +L  +  +N
Sbjct: 120 ATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQISTTVEQVNSYLERINDLN 179

Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             I        H  +D LDQRD  + +++++ GI    + +    +    G TL      
Sbjct: 180 KQIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDTF-NITLQSGQTLLSGTTV 238

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                  ++      +    +     ++       S V  G++  LL  R   +   Q+Q
Sbjct: 239 YPLQAVPSASDPKRLAVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQ 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L ++A  L  +F+ +     + +  PG  +         +     S     +    ++  
Sbjct: 299 LGQLAIGLAMAFNAQHREGYDLDGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAI 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------------------------- 372
                        + V  L+                                        
Sbjct: 359 RASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLTLTGSGTPAAGDAWTLQPA 418

Query: 373 -----DLINHYCDSFNKNFIFDPVAGINTNVTLLEY--------------ARNSIGWLEK 413
                DL     D          +   N N  L                        L  
Sbjct: 419 RDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVN 478

Query: 414 NRSDSHDLHMKSQVVFNHISESY----SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           N          +     ++ +       +  GVNL EE   L   ++ Y  S K++    
Sbjct: 479 NVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVAS 538

Query: 470 KMLQTLLEG 478
            +  TLL  
Sbjct: 539 TVFDTLLGL 547


>gi|85706143|ref|ZP_01037238.1| flagellar hook-associated protein [Roseovarius sp. 217]
 gi|85669307|gb|EAQ24173.1| flagellar hook-associated protein [Roseovarius sp. 217]
          Length = 459

 Score =  164 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 163/463 (35%), Gaps = 18/463 (3%)

Query: 25  VRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             N+ NA  + +  R+   T +     V V     +             +A     +  +
Sbjct: 2   SGNLANALTEGFAPREIALTSTRDSRGVRVEAVSRQIDLGLLSDRRIADAAQAASEVGVA 61

Query: 83  FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
           F +  E +        S T   + L  +L + S    +    + V+  A+ +  + N +A
Sbjct: 62  FASAVEQVIGTPESAQSLTGRFAALEAALVTASTRPEDSNRLQAVLREAQALGAHLNDAA 121

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
            E+ ++R+ AD++I   +  L   L ++  +N  I        D     DQR  ++  ++
Sbjct: 122 TEIARLRSAADRDIAETVVALNSGLQQVVALNIQIATNLTRGTDTATLEDQRQSVIDSLA 181

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES-----NPIFIDGV 257
           EI+ +  + R+N  + + T+ G  L +     ++F++               + I IDG 
Sbjct: 182 EILPLRQVPRDNGAVALVTTAGGLLLDGRAVTLSFDRAPMVAAHMTLENGLLSGIAIDGT 241

Query: 258 VVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE---KDPIAGNSEN 313
            V +      +  G++ AL  IRD         LD +AR L+  F +             
Sbjct: 242 AVPTGSDRGPLQGGRLGALFDIRDRTSVDTTADLDAIARDLVERFQQSGLDPTRGAGDAG 301

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
           +            ++ + + I     V+P    +   +RD                G   
Sbjct: 302 LFTDAGDLFEAQNESGIARRIGVNQAVDPLRGGDLFRIRD------GVAAQSAGPPGDGS 355

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           L+     +          A  +   +   +A   I  L + R  +  +   +        
Sbjct: 356 LLVTLTRALTDTSPLSSGALGSGARSAAGHAATLISGLSQARVAAEQVQSFATGQATEFR 415

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                  GV+   EL  L+ VEQ++  + ++I   D ML TLL
Sbjct: 416 TLELAN-GVDSDAELQRLLLVEQAFGANARMIQTIDDMLDTLL 457


>gi|302669846|ref|YP_003829806.1| flagellar hook-associated protein FlgK1 [Butyrivibrio
           proteoclasticus B316]
 gi|302394319|gb|ADL33224.1| flagellar hook-associated protein FlgK1 [Butyrivibrio
           proteoclasticus B316]
          Length = 557

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/554 (11%), Positives = 146/554 (26%), Gaps = 78/554 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MSL+A     Q+    +     +   N+ N D + Y R+                     
Sbjct: 1   MSLMANLYVGQSGLQTSQNALNTTAHNMANVDTEGYTRQQVSQGTRAYQTLERRYDTIAP 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V     +       D              +        E     +         
Sbjct: 61  KQIGTGVNYNHCKQVRSEFLDLSYRQEKGRYAFYDVSTKALEEIEDQLQ-EMNGTEFADS 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           ++ L  S++  +K+    +    ++  A E +    +    +   + + D  + + +  +
Sbjct: 120 LNNLWVSVQELAKDPCSAVNQSAMVTRANEFLTRAKSVYNGLVSYQENLDSTVSVMVKEI 179

Query: 164 RRFLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                 +  +N+ I +  + K + A+D  D+R+ LL K+ E   I        ++ V   
Sbjct: 180 NDIGDRIRKINEDIVYIESGKQEKANDLRDERNGLLDKLGEYGKIEYHEDIFGNVSVLFE 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIF---------IDGVVVSSNQGSAVPKGKIK 273
             + +       I                            +     +   +++  G + 
Sbjct: 240 GSSFVTTDHVNHIGLITTEHVEPPESPVGYATPYWEYAAKTEVDAEGNKIITSIAGGHLY 299

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L     +       +L  +        +    I  +            I ++  +  Q 
Sbjct: 300 NLQTTISTTTNTDIGKLKAVLLARGDHNATYHDIVEDENYYNSNIAQSVIMNVQAEFDQM 359

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWN-------------------VKNLAGYPDL 374
           I   +    +   N          +  F  +                    K        
Sbjct: 360 IHAIMTKINEVMINAESNPATLDKTVGFPADFALFVEANPTDQLTYEISEDKPAGSINTG 419

Query: 375 INHYCDSFNKNFIFDP-------------------------------VAGINTNVTLLEY 403
                   N   I DP                                  ++T  + + Y
Sbjct: 420 FTIMNTQVNPKLIQDPTLFTFRMIDGGEDTATMTALKEAFTKEEYILNPNVSTRNSFVTY 479

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +  +      +    +   + +S      VGV+  EEL F+I  + +YN S++
Sbjct: 480 YNSLVSQVANSGDVYKSISQAQEETVSAVSSGREQIVGVSSDEELEFMIMFQNAYNASSR 539

Query: 464 LIMFTDKMLQTLLE 477
            I    +ML+ L+ 
Sbjct: 540 YINVVSEMLEHLVS 553


>gi|149375027|ref|ZP_01892800.1| Flagellar hook-associated protein [Marinobacter algicola DG893]
 gi|149360916|gb|EDM49367.1| Flagellar hook-associated protein [Marinobacter algicola DG893]
          Length = 682

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 131/370 (35%), Gaps = 16/370 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + N              +   NI NA+   Y R++                   V++
Sbjct: 1   MAGLINIGLTGILGHQAALNTTGNNITNANTPGYSRQEVQFETQSAQRTGAGSVGTGVSI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R        + +   SS  G+Q  L S  +  + +   +      ++ ++    SL+
Sbjct: 61  TNIRRLANEYLTQQVREDSSLFGEQEALNSELSRLDNLLGGET--TGLSNALNNFFASLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     + V+  A++VV  F    +E  + R     ++E  + +    L  +  
Sbjct: 119 NAAEDPASLPQRQLVLSEAQQVVNRFEALNQEFIQQRESVKTQMEQGVKDANTLLKSIAE 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N AI      A   + ++ LD+RD  L+++SE++ IS +    + + V   +G  L   
Sbjct: 179 LNLAISESPGLAQGREPNELLDKRDEKLRELSELVNISVVQAQGSQVNVSLRNGQALVVG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   + N+   T     +   G  +  N  S V  GK+  L +     +     +L
Sbjct: 239 DRAAQLGTRDNAEDPTRLEFTLTTGGRTL--NVDSQVNGGKLGGLRRFESEALQPAFAEL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  L  + + +  I  + E   G      I     +  + I+ T    P+       
Sbjct: 297 GRVAIALSETLNHQHEIGMDLEGDLGGLFFSDINSQAAQRGRVIANTNNGAPRDAQLAVE 356

Query: 351 LRDGGSVSKK 360
           + D   +   
Sbjct: 357 IIDSSQLPAG 366



 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/462 (9%), Positives = 110/462 (23%), Gaps = 29/462 (6%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           +   V       + +      A              E          + ++         
Sbjct: 221 QGSQVNVSLRNGQALVVGDRAAQLGTRDNAEDPTRLEFTLTTGGRTLNVDSQVNGGKLGG 280

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFN-------TSAREVQKIRADADKEIELEI 160
               ES +   +   LG+  I  +E +                           +    I
Sbjct: 281 LRRFESEALQPAFAELGRVAIALSETLNHQHEIGMDLEGDLGGLFFSDINSQAAQRGRVI 340

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           +N          +   I   +     +       D    ++ +      + +      V 
Sbjct: 341 ANTNNGAPRDAQLAVEIIDSSQLPAGSWSLRFGGDGRNFELVDRATGEVVNQGRLPDPVQ 400

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESN-------------------PIFIDGVVVSS 261
           +      F        F   +S+ +    N                   P+  +G   ++
Sbjct: 401 SEISMPGFNIRIEGGTFNAGDSFLIEPTRNAAANIGLEVNREEDLAFASPVRAEGSANNT 460

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLD---EMARVLIGSFSEKDPIAGNSENVPGLF 318
              +      +       +S++  F+        +         +      ++     L 
Sbjct: 461 GDATINQGKMLDVRDPFTNSLLSNFRQDGQLDPPLDIQFRDDGGQLVYDIVDANTNTVLQ 520

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
             D        + Q            RS   F             +  ++    + ++  
Sbjct: 521 AGDAAAVPPVNVFQTGQSNKLFTEDPRSPDYFGFQFEISGNPRPGDSFSINYNTNGVSDN 580

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            ++     +       N + +  E     +  +      S         +    +    +
Sbjct: 581 RNAEFLAALGTENTLNNGSQSFAEGYAGLVEDIGVKTRQSQLDKDAGSTLLEQSTNQRES 640

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             GVNL EE   LI+ + +YN S +++     +  TLL+  +
Sbjct: 641 VSGVNLDEEAGKLIQYQAAYNASAQVVSVAQDLFNTLLQSFR 682


>gi|253681928|ref|ZP_04862725.1| flagellar hook-associated protein FlgK [Clostridium botulinum D
           str. 1873]
 gi|253561640|gb|EES91092.1| flagellar hook-associated protein FlgK [Clostridium botulinum D
           str. 1873]
          Length = 686

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 19/237 (8%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L A  N  +               NI N++ + Y R+  +   +             
Sbjct: 1   MSGLFATLNVGKRGLYAQQGALDVTSHNIANSNTEGYTRQRAIMETTRPFGMPSMNCQIG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +   +       D  +   +S +GQ      + +  E +  ++  +   + 
Sbjct: 61  PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGISS 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I K  D+ +  +K+         +   A  +    N +  ++ K++ +A + I+    +
Sbjct: 120 LIGKFFDAWQEVAKHPEGSNARTVLASQASALANELNHNYGQLTKVKENAQESIKQATFD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           +   L  +  +N  I     S  + +D +D+RD+LL ++S+   I         + +
Sbjct: 180 INNALDRVDKLNQQIMAVKVSGMEPNDLMDKRDLLLDELSKKFNIVVERDKFESINL 236



 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 96/290 (33%), Gaps = 4/290 (1%)

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           D    ++   + +   V +  D +   + G T           +  +  T      P   
Sbjct: 396 DEYKGELKGFMTVQQDVDDYIDQMNKLAKGITFSVNTMHSGVSDLGDGKTPLVVQEPTNN 455

Query: 255 DGVVVSSNQGSAVPKGKIK-ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
              V  ++       G++     +I D    +F+ +       ++ S  E      +   
Sbjct: 456 GKDVEKADYMPFFVNGEVADKEYEIVDGKKVLFKEKSINKLGKVLNSEIEITAANISINK 515

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                +      +++      S+      Q  +    +        K     K +     
Sbjct: 516 QIVDDVMQIKTRINDDKFGLASKNTKDGEQDGARALAIAQLRDKLLKIQNITKGMTRKEF 575

Query: 374 LINHYCDSF---NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
           +  +  ++    +     D + G    + +  Y ++++  L      +         +  
Sbjct: 576 IQQNGENNKLTKDITLGLDTIKGDINGMKIDSYFKDTVDKLGVEEQQAKRTVKNQGSLLK 635

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             S+   +T GV+L EE++ +++ + +Y  + K+I  TD++L  ++ G+K
Sbjct: 636 DFSQRRESTSGVSLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGLK 685


>gi|33592485|ref|NP_880129.1| flagellar hook-associated protein FlgK [Bordetella pertussis Tohama
           I]
 gi|33572131|emb|CAE41673.1| flagellar hook-associated protein 1 [Bordetella pertussis Tohama I]
 gi|332381902|gb|AEE66749.1| flagellar hook-associated protein FlgK [Bordetella pertussis CS]
          Length = 548

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/549 (14%), Positives = 159/549 (28%), Gaps = 78/549 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            ++N A    N +     +   NI NA    Y R+  +T+ +             V V T
Sbjct: 2   NLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
              +  +   + L     +  Q     +  +    +  D       T  ++ L  S  + 
Sbjct: 62  VTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGD--RTVGITPALAGLFTSTNAA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +   +I  A  +V   NT+ +E++  R   + +I   +     +L  +  +N
Sbjct: 120 ATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQISTTVEQANSYLERINDLN 179

Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             I        H  +D LDQRD  + +++++ GI    + +    +    G TL      
Sbjct: 180 KKIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAF-NITLQSGQTLLSGTTV 238

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                  ++      +    +     ++       S V  G++  LL  R   +   Q+Q
Sbjct: 239 YPLQAVPSASDPKRLTVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQ 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L ++A  L  +F+ +     + +  PG  +         +     S     +    ++  
Sbjct: 299 LGQLAIGLAMAFNAQHRQGYDLDGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAI 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYP------------------------------------- 372
                        + V  L+                                        
Sbjct: 359 RASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLTLTGSGTPAAGDAWTLQPA 418

Query: 373 -----DLINHYCDSFNKNFIFDPVAGINTNVTLLEY--------------ARNSIGWLEK 413
                DL     D          +   N N  L                        L  
Sbjct: 419 RDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVN 478

Query: 414 NRSDSHDLHMKSQVVFNHISESY----SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           N          +     ++ +       +  GVNL EE   L   ++ Y  S K++    
Sbjct: 479 NVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVAS 538

Query: 470 KMLQTLLEG 478
            +  TLL  
Sbjct: 539 TVFDTLLGL 547


>gi|269976274|ref|ZP_06183270.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1]
 gi|269935603|gb|EEZ92141.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1]
          Length = 472

 Score =  163 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/482 (9%), Positives = 110/482 (22%), Gaps = 14/482 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61
           +L       +  +           NI N +   +    T    +    V        N+ 
Sbjct: 1   MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGAAPRLNER 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                         Q  L    +++    +     N           D      K     
Sbjct: 61  --------GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQ 112

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +  +      +   Q        VQ   AD   +I          L            K 
Sbjct: 113 VYTRNGSFGLDAQGQVVAADGSFVQGWMADKKGKISASGQTQNLVLPLTQTFEANPTKKI 172

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
               +        D    K ++      + +              L +    D     + 
Sbjct: 173 TYGGNLPADKVWIDPSPNKRADEDNAFMVTQTLTVYDDKGDPHNVLLKFERSDSKAPGVK 232

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKG---KIKALLQIRDSVVPIFQNQLDEMARVLI 298
                   +      +   + + + +  G   K  A     +           E    L 
Sbjct: 233 PKWKVMAYDAEAYKHLTKKAERDTEITAGDDQKGAAYKLKYNGKEATSFEIEFETDGTLK 292

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
               +             +     +   D      I+  +     Y    S   +    +
Sbjct: 293 EDTKKLLKNVEFKVMQAKVTADKKLAVKDGVAANPITMDLSALTGYAGVNSAQYETIDGN 352

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                    +     +   + +   +       A  +  + L +   +   ++E   S  
Sbjct: 353 SAGTLTGFGVEADGTIRGTFSNGDTRALAKIATASFSNPLGLEKAGASY--FVESGNSGQ 410

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +          ++        V+L  E + LI  ++ +  + ++I  +D++LQ L+  
Sbjct: 411 PQIGEPGSGTRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELVSM 470

Query: 479 VK 480
            +
Sbjct: 471 KR 472


>gi|300950179|ref|ZP_07164123.1| flagellar hook-associated protein FlgK [Escherichia coli MS 116-1]
 gi|300450464|gb|EFK14084.1| flagellar hook-associated protein FlgK [Escherichia coli MS 116-1]
          Length = 547

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 160/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+   +             V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMEQANSTLGAGGWGGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE- 229
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 230 -----------------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                            T    ++    N        N   + G++   +Q     +  +
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 273 KAL------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             L                D+     ++        ++ +   K  +A  +       + 
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                +     Q     +  N  +   P           +  +           +    D
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418

Query: 381 SFNKNFI------------------------------FDPVAGINTNVTLLEYARNSIGW 410
           +     +                                    +    +  +   + +  
Sbjct: 419 AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSD 478

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +           V   +S    +  GVNL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|297183504|gb|ADI19634.1| flagellar hook protein flge [uncultured delta proteobacterium
           HF0770_45N15]
          Length = 494

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 41/504 (8%), Positives = 116/504 (23%), Gaps = 34/504 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M+LL       +      +       NI N +   + R                      
Sbjct: 1   MALLGSLQTGASGVKTYGKAMQVTGNNISNVNTFGFKRNIIAFEDLLGNDYPQGRSFTKV 60

Query: 49  --NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V + +       +    L +             +  + +        +N       +
Sbjct: 61  SNGVKIGSVEM---EVSQGALESTQLTTDLAIAGGGYFTVID-----PSTSNEYFTRNGQ 112

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           +    + +        +    +D   +  +    S + +  +            + ++  
Sbjct: 113 MSYDKDGFLATPRGYRVQALEVDRITKESKGLPGSLKILGLVDPPQPSGDGRNNTGMKIA 172

Query: 167 LSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVR--NNNDMVVYTSD 223
            +              +   D          +  +       S + R   +    V    
Sbjct: 173 ANLDANAVVKDVPFDPTNVRDTMYNFATSTTVYDQYGNTHTASVVFRKRPDLPEQVDAGT 232

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV------VSSNQGSAVPKGKIKALLQ 277
           G  +  +  R+     +     +    P  +  V           +  A   G  +A   
Sbjct: 233 GLPIPGSGVRNQWEYYLLFDGASLGQVPGTMLAVGGGFMQFTGDGKLIAATSGSFEAQPG 292

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN-VPGLFIADGIKDLDNKLCQGISE 336
                          +    +   +     A       P +         +         
Sbjct: 293 GVGPDGQPLPGGPPRLIPQPVDPETGVPQFAVPFNGEDPIVLGLHLGDGFNPDDPTDPRT 352

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            +    Q+    + +      +         +     +   +   +N+      +   + 
Sbjct: 353 GLDGITQFAGKYNVVEASADGNGSGNLESIFVEADGTVTGVFDSGYNRPIGRIILTKFDN 412

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L +   N +  +E   S            F  I         V+L  E   +I+ ++
Sbjct: 413 AGKLAQLGDNLL--VETLSSGKKVTGEPGTAGFGEIRSQMLEQSNVDLSLEFVKMIESQR 470

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           ++  + K +  +D+M+  L+   +
Sbjct: 471 AFQANAKTVTTSDEMIVDLVNMKR 494


>gi|302391042|ref|YP_003826862.1| flagellar hook-associated protein FlgK [Acetohalobium arabaticum
           DSM 5501]
 gi|302203119|gb|ADL11797.1| flagellar hook-associated protein FlgK [Acetohalobium arabaticum
           DSM 5501]
          Length = 801

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 153/452 (33%), Gaps = 21/452 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  +     +       +       NI NA+ + Y R++ +   +               
Sbjct: 3   STFSGIELGKRALQVQRKSLDVTGHNISNANTEGYSRQEAIHATNRPHTIQHGTGAGQVG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V +   +       D  +   +SA G+  +        E++  ++  + S  + + + 
Sbjct: 63  TGVKIDEIKRVRDEFIDGQIREETSAQGKWEVKNDALEQIELIF-NEPSDKSLRNSMDEF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            +SL+  + N   + +  TV   A  +   FN    +++  R   + +++ +++++  + 
Sbjct: 122 WNSLQELNNNPESEAVRATVRQRALSLTDTFNHLDDQLRDYRTSLNNQLKTKVNDINSYG 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +  +N  I    +   + +D  D+RD+L++K+S+I  + T   +N  + V     + +
Sbjct: 182 QRIADLNAQISRIESMDQNPNDLRDKRDLLVEKLSKITSVQTNEMDNGAVTVNIEGQSLV 241

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
           ++     +   +  S     +     ++     +N+      G+++ LL+ RD  VP + 
Sbjct: 242 WQDEVSKLKTVETASSDSKFDK---TVEVRWDKTNEEVNFTNGEMQGLLEARDEEVPKYV 298

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD MA+ L  +F+++         +    + +   ++       +           + 
Sbjct: 299 EQLDNMAQELAATFNDQHHQGY---GLSDTEMTELESNVQATPSDPLDGATGKFNVVVNG 355

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   +           + G   + +   D+             + + T ++    S
Sbjct: 356 SVEDSVTVNSGDGLNTIANKIDGVAKVDSFTVDNNGDGAADTLKVHSSLSGTAIDLVNTS 415

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                            +    +  +   S  
Sbjct: 416 DTEAGAVNVVQKLGLKGTGAGRDFFTGKTSEV 447



 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/430 (9%), Positives = 125/430 (29%), Gaps = 4/430 (0%)

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +      +    D      +  +     L          S  +    +    +      
Sbjct: 375 KIDGVAKVDSFTVDNNGDGAADTLKVHSSLSGTAIDLVNTSDTEAGAVNVVQKLGLKGTG 434

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                    +     +     +  +     +   +  I+ +    +   I  ++      
Sbjct: 435 A-GRDFFTGKTSEVASGSTAGKADIVFVVDNTSSMDSIQEEVKDNLSNFIDTIKSKGVND 493

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +       +          +      +  + +  + +    + +     +   T+   
Sbjct: 494 IQMGVIEYRDSNIIPKDFSGSNWTSDPDKVKATLANLDSSSGGSEEYA-MQAVKDTINNY 552

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
             R           V   +     +G + S+   + +   ++  +      +     ++ 
Sbjct: 553 DFRSNEAGLQVKNAVLVTNEDADDEGQLSSTIDNANIEGLQVHGVYHEGTDIYGEDTSEF 612

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D +     G   +    +  S+    +  A G     ++    I+       +   +   
Sbjct: 613 DNLTSSTGGESVDLSDSSWGSKLANVVGGAIGSAASSSEDNGEITAKNIDLAKAIKSEGG 672

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L    + +K    +  +  G  D      ++   + + +     +      +Y  ++I  
Sbjct: 673 LAKIAAATKA--SDNADSNGVNDYAGDGGNALALSQVDNKKVFSSGTADFGDYYESNISK 730

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L  +   +  +    +V+  ++ +   +  GV+L EE+S +IK +QSY  + K     D+
Sbjct: 731 LGVDSQRAGRMVKNQEVLTKNLKQQRDSISGVSLDEEMSKMIKYQQSYTAAAKFTSTMDE 790

Query: 471 MLQTLLEGVK 480
           +L TL+ G+K
Sbjct: 791 ILNTLVNGIK 800


>gi|311031940|ref|ZP_07710030.1| flagellar hook-associated protein FlgK [Bacillus sp. m3-13]
          Length = 620

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/478 (12%), Positives = 142/478 (29%), Gaps = 38/478 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+           ++  NI NA+   Y R+      +               
Sbjct: 3   STFHSLEVARRGLVTQQTALQTVGHNIANANTPGYTRQRVNFVQTEPYPAPSLNRPQIPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +   ++  D      ++ +G            E +  ++      +  +
Sbjct: 63  QIGTGVEAGSIQRVRESFLDIQYRGENNKLGYWESRADSLQKMEEIM-NEPSETGLSTTL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   S +  + N +       V      V + F   +  +  ++ D   E+ + +  + 
Sbjct: 122 DRFWQSFQDLAVNPTNAGARSVVRQRGLAVAETFRFLSDSLTSVQGDIKNEMNVTLKQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
               ++  VN  I       + A+D  D+RD L+ ++S+++ I T            ++G
Sbjct: 182 ALSQQINNVNKQIGEIEPHGYLANDLYDERDRLVDELSQLVNIKTTQVGTGGSPSALAEG 241

Query: 225 TTLFETVP---------RDINFEKMNSYTVTSESNPIFIDG---VVVSSNQGSAVPKGKI 272
               + V           D    K+NS ++   ++   +DG      S   GS    GK+
Sbjct: 242 KLTIDLVDDSGRKIGNLVDATSLKVNSLSLEYHNDTELVDGYRLGDTSFGIGSMQASGKL 301

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           + L+     +    +  L       + + + +     N  +  G  I+        +   
Sbjct: 302 RGLIDSYGFMEGNTEKGLYPDMLNHLDTVAYEFAQEINRVHESGWSISSM---ETGEHTA 358

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                         N   +    +VS   + ++ N+A                +      
Sbjct: 359 FKFFEFKNTDITAGNKKDVAKLFTVSADIVQSLDNIAASGYNKGVITTGEFHGYNGVENV 418

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            +    ++         +   + + S    +K+   F  +       +G  L EE + 
Sbjct: 419 SVTVQSSVDAAGVQQFAYKVYDAAQSPKQELKTSGNFASL-----EQLGAGLSEEFTD 471



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 55/123 (44%), Gaps = 1/123 (0%)

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRS 416
                 ++  +      +    ++     +      +N  + T   Y  + IG L  +  
Sbjct: 493 GNFINIDIPKVGQVGGRVGDGSNAVALAEVKARSLQLNGVSTTFQNYYESVIGGLAVDAQ 552

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +++ L   S+ +   + +   +  GV+L EE++ +I+ + +YN S ++I  TD++L  ++
Sbjct: 553 EANRLSHNSETLKLSVDQRRQSVSGVSLDEEMTSMIQYQHAYNASARMITLTDELLDKII 612

Query: 477 EGV 479
            G+
Sbjct: 613 NGM 615


>gi|114566393|ref|YP_753547.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337328|gb|ABI68176.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 475

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/482 (10%), Positives = 123/482 (25%), Gaps = 11/482 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   I  NI N +   Y +   +   +         R ++   
Sbjct: 1   MMRSMYSGVSGLRNHQTRMDVIGNNIANINTAGYKKSRVVFQDTLYQTMRGATRPDSSGS 60

Query: 63  FDKV----LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   +    S     ++             D   +      I   +    + + N 
Sbjct: 61  RGGTNPMGIGLGMSVSSIDQIHTGAPTTATNKLLDMGIDGDGYFMIRHGQQKYFTRAGNF 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             D  G  V       VQ + T    V              +        +     +   
Sbjct: 121 ELDTKGNLVHTANGYYVQGWVTKIDPVTGQWNLDCSREVETVDISGLLACDPQATKEMSF 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
                       +D  D  +   ++   I+++   ++     T         V       
Sbjct: 181 SGNLDAEIPFKQVDPEDESIYPGTQESIITSMDVWDSLGKKETVYFRFFKYEVDAGPPRL 240

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +  ++   NP+F +     S    A     +    +   +       +L  +     
Sbjct: 241 SNWAVDISLN-NPLFENAKDYDSTSDFATVDLSVDPPTEETLTTGETEIVRLFNLQF--- 296

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
               +        +  P        +  +               Q+  N S      +  
Sbjct: 297 DDNGKVVLAGTPDDPEPKTVDLIIDRASEAAEDIEFKIDFSAMTQFAGN-SVTEIAQNGY 355

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +   +     +   Y +   ++     +A       L +       + +   S  
Sbjct: 356 GMGSLSSYTVGIDGVIRGSYDNGETRDLARVALARFQNPAGLTQLGGTM--FQKSVNSGE 413

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +   ++     I  S      V+L EE + +I  ++ +  ++++I  +D+M+Q L+  
Sbjct: 414 AVVSPPTESGMGKIVPSSLEMSNVDLSEEFTDMIVTQRGFQANSRIITTSDEMIQELVNL 473

Query: 479 VK 480
            +
Sbjct: 474 KR 475


>gi|307718606|ref|YP_003874138.1| flagellar hook protein [Spirochaeta thermophila DSM 6192]
 gi|306532331|gb|ADN01865.1| flagellar hook protein [Spirochaeta thermophila DSM 6192]
          Length = 462

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/491 (8%), Positives = 111/491 (22%), Gaps = 42/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++       +   N   +   I  NI N +   + +                 R   +  
Sbjct: 1   MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDMISQTLSGAARPTEEVG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          ++    ++       E        + S          
Sbjct: 61  GVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAIQGEGFFILRKGDRSFYTRAGVFGL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E Y  N +   L            Q F  +   +Q +      +     +        
Sbjct: 121 DEEGYLVNPAN-GLRVQGWRAETVNGQTFINTTGSLQDLIIPVGSKDPASATTEVFLACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      I      +                       +  + ++           T   
Sbjct: 180 LDKRLPEIPPGAGPETVREG--------------TWVATYDIYDSFGNPHTLRIEFTKVV 225

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
             P              + +N +   G   ++     +    +  +  + D         
Sbjct: 226 GEPNRWRATVTVDPDAETPTNTLVDVGETNNATNTFIIQFDNLGTIQSVEDEAGD----- 280

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  ++ + + +  +  +            ++   N     +   +    Q+    S
Sbjct: 281 -------VLDAGALQVQVGFDVPEATIPPGEAAVRQTFNLNLGQVGSVVDAVTQFAERSS 333

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     +   Y +  N+      +A       L +       
Sbjct: 334 TKVFRQNGYTMGYLEGFKIDQNGVITGVYSNGNNRPLGQIALATFVNPGGLEKEGETM-- 391

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +     S   ++   +      +         V+L E  + +I  ++ +  +++ I  +D
Sbjct: 392 FRVSLNSGDPNVGPPNFAGKGKLIAGALEMSNVDLAEAFTDMIVTQRGFQANSRTITTSD 451

Query: 470 KMLQTLLEGVK 480
           +MLQ LL   +
Sbjct: 452 QMLQELLTLKR 462


>gi|217076647|ref|YP_002334363.1| flagellar hook-associated protein 1 [Thermosipho africanus TCF52B]
 gi|217036500|gb|ACJ75022.1| flagellar hook-associated protein 1 [Thermosipho africanus TCF52B]
          Length = 847

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 126/425 (29%), Gaps = 33/425 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           SL    N        +      +  NI NA+   + R+  +                   
Sbjct: 5   SLFGALNTGLLGVYTSKLAMNVVSHNIANANTPGFSRQVPIIRTMPPIPATTLTQPSIPL 64

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V   +       D      ++       + +     E + A +  ++   +  
Sbjct: 65  QIGTGSKVKDIQRIRDEFLDIQYRQVNNKYNYWDSITANLHFVEQLFA-EPGDSGIRYLF 123

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
             +   +E    + +     + ++  AEE+V+N       ++++R D D EI   +  + 
Sbjct: 124 DSMWSGIEEIITDPTNSAAKRELVSRAEELVKNVKDLYSRLEQLREDLDYEISQRVEQIN 183

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             +  L  +N  ++   A K   +D LD+RD +L  +S+   I      +  + +   D 
Sbjct: 184 GMVKRLADINSKVRLSMALKSTPNDLLDERDRILDDLSKFADIFYTEDASGQISLRIGDQ 243

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L  +   ++   +            IF+    V          G +KA + +RD ++ 
Sbjct: 244 IVLTGSDVNELRALER---PYGKGFKEIFVGNSKVDI------HDGSLKAAMDLRDDIIV 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+LDE    L   F+       NS+              DN     +          
Sbjct: 295 KYMNRLDEFVLYLTDKFNLIHKDGFNSDGSVTGLNFFNEMTADNIENSVLFRIAGSKRVE 354

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                ++    +         K       ++     S  +    +         T+ ++ 
Sbjct: 355 GGPIKYISGMSNRDNLSDITTKQFIDQGAIVFFDGSSNAQAISVNA------GDTIQDFM 408

Query: 405 RNSIG 409
                
Sbjct: 409 NTVSS 413



 Score = 90.5 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/392 (10%), Positives = 114/392 (29%), Gaps = 10/392 (2%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILG--KTVIDNAEEVVQNFNTSAREVQKIRADA 152
            +N +  + +      ++ Y  N SE  +      I           TS   +  +  D 
Sbjct: 448 DFNGNMFNTMGFNTKDVDIYVINQSEFNVQEGTYKIKINGTEANINVTSGYTINDLANDI 507

Query: 153 DKEIELEISNL--RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           +     ++  +     L  +   +++      +  D+     Q ++ ++    +      
Sbjct: 508 NSNFSSDVKAVVYNSKLLIIPTKSNSFDRNLVNIQDSDGLFTQSNLHVETYKALDTSKET 567

Query: 211 VRNNNDMVV---YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           + N  D  +    T   T++     +    E  +            +        +G+  
Sbjct: 568 LDNILDHTLPFKITIGATSIEIDPTQTTLKELADKLNEVGTGILFDVTPHNKFVIRGTRS 627

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              KI   ++  +++         +                 +         A       
Sbjct: 628 MDFKIDKTIKGPEALFVKLGFIDADSDPTNDWDEDYVFLNPFDEPKSLRERFAKADTLFI 687

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG---YPDLINHYCDSFNK 384
           +KL               S  S   +  +V    + +  N       P    +       
Sbjct: 688 DKLTPNEPFRFVEKFNVNSTVSVNPETIAVDYGKIEDNTNWDAKVFSPTGQANTAIMEIL 747

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
           + +       +   +  EY    +  +      +  +   + ++   IS       GV+L
Sbjct: 748 SKMRFEKILNDGRESFAEYLGGIVAEMGVEGETAMKMKDNTDIIMKDISNERERVKGVSL 807

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            EE++ +IK + ++N S +++   D+M+  ++
Sbjct: 808 DEEMANMIKFQHAFNASARVMTAVDEMIGRVI 839


>gi|304558598|gb|ADM41262.1| Flagellar hook-associated protein FlgK [Edwardsiella tarda FL6-60]
          Length = 546

 Score =  162 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/549 (14%), Positives = 162/549 (29%), Gaps = 77/549 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  + A    A    NI N     Y R+      +             V V
Sbjct: 1   MANLINNAMSGLSAAQTALAVTSNNINNVYTAGYNRQSVSFAENNGTSTPAGFIGNGVVV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                E        L    S            +  + + AD    NS +  +     +L+
Sbjct: 61  SGINREYNQFIVNQLRQGQSEFATTSTYHKQISQIDDLLAD--STNSLSANMQNFFKNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +     S+    +TVI NA  +   F T+   ++ + +  +  +      +  +  ++  
Sbjct: 119 NLVSYPSDSAARQTVISNANGLTAQFKTTDAYLRNLESSTNATVSNNAEQINDYAKQIAN 178

Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I   T +      +D LD RD +  ++++I+ +   +++     +  + G +L + 
Sbjct: 179 LNNRISELTGASGGTAPNDLLDLRDRMASELNQIVNVDISMQDGAM-NISFAGGLSLVQG 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +      +  G  +S    + +  G +  + + R+  +   +NQL
Sbjct: 238 GDAYSVKAVPSSSDPSRT-TLAYDRGNGLSEVPEARISGGSMAGIFRFRNEALDNTRNQL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A  +  +F++      +     G  +    +          S+          +   
Sbjct: 297 GQIALSMANAFNQVQSEGFDLNGDKGGDLFGFGQPESLANTNNASKASLSASYDDISKVQ 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLI--------------NHYCDSFNKNFIFDPVAGINT 396
             D     K   WNV  LA                    +      N     +    + T
Sbjct: 357 ATDYRIDFKDGKWNVTRLADGTQQTIAPEADGGDTVLKFDGLKVKINDTPAENDSFKLRT 416

Query: 397 NVTLLEYARNSIGWLEKNRSDS--------------------------HDLHMKSQVVFN 430
             T++      I    K  + S                            L      +  
Sbjct: 417 TSTVINGFDVKISDPAKIAAGSTKDEVGDNTNAQKMLDLQNKKIVGGKATLSGAYAGLVG 476

Query: 431 HISES---------------------YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            I                          +  GVNL EE   L++ +Q Y  + ++I    
Sbjct: 477 TIGNQTNGAKVDSTAQGNVVKQLTKEQQSVSGVNLDEEYGDLVRFQQYYMANAQVIQTAT 536

Query: 470 KMLQTLLEG 478
            M   LL+ 
Sbjct: 537 SMFNALLDI 545


>gi|331269279|ref|YP_004395771.1| flagellar hook-associated protein 1 [Clostridium botulinum
           BKT015925]
 gi|329125829|gb|AEB75774.1| flagellar hook-associated protein 1 [Clostridium botulinum
           BKT015925]
          Length = 647

 Score =  162 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/417 (12%), Positives = 118/417 (28%), Gaps = 28/417 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L +  N  +               NI N++ + Y R+  +   +             
Sbjct: 1   MSGLFSTLNVGKRGLYAQQGALDVTSHNIANSNTEGYTRQRALMETTRPFGMPAMDNQVG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +   +       D  +   +S +GQ      + +  E +  ++  +   ++
Sbjct: 61  PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGISN 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I K  D+ +  + +         +   A  +    N +  +++K++ +A + I+  + +
Sbjct: 120 LIGKFFDAWQEVANHPEGSNSRTVLASQASAIASELNHTYNQLEKVKENAQESIKQSVFD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L  +  +N  I     S  + +D +D+RD+LL ++S+   +         + +   
Sbjct: 180 VNNALDRVDKLNQQIMAVKISGMEPNDLMDKRDLLLDELSKKFNVVVEQDKFGSINLKPK 239

Query: 223 DGTTLFETV-PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
              T+       +    + N        + I         +      KGK +  +    +
Sbjct: 240 YTKTVDGNGEVANPLLVRKNPNDEVMRFSYIK--------SIEPKYTKGKDEYTITYLKN 291

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                                E      +   V            +          I  N
Sbjct: 292 GDKDNVAIFKLKLTGKTEEEKEAQFKRLDESRVIWSTSDKNYDSKNGLAVDKNGGVIGKN 351

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
           P    + +         K  L     +    D      +   K   F   A  +   
Sbjct: 352 PVNFEDLALFDLKDDEYKGELKGFMTVQQDADDYIEQMNKLAKGIAFSVNAIHSGKN 408



 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 47/98 (47%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           +     D + G    + +  Y ++++  L     ++  +      +    S+   +  GV
Sbjct: 549 DITLGLDTIKGDINGMKIDSYFKDAVDKLGVQEQEAQRIVKNQGALLKEFSQRRESISGV 608

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L EE++ +++ + +Y  + K+I  TD++L  ++ G+K
Sbjct: 609 SLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGLK 646


>gi|315186381|gb|EFU20141.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578]
          Length = 462

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/491 (8%), Positives = 111/491 (22%), Gaps = 42/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++       +   N   +   I  NI N +   + +                 R   +  
Sbjct: 1   MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDMISQTLSGAARPTEEVG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          ++    ++       E        + S          
Sbjct: 61  GVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAVQGEGFFILRKGDRSFYTRAGVFGL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E Y  N +   L            Q F  +   +Q +      +     +        
Sbjct: 121 DEEGYLVNPAN-GLRVQGWRAETVNGQTFINTTGSLQDLIIPVGSKDPASATTEVFLACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      I      +                       +  + ++           T   
Sbjct: 180 LDKRLPEIPPGAGPETVREG--------------TWVATYDIYDSFGNPHTLRIEFTKVV 225

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
             P              + +N +   G   ++     +    +  +  + D         
Sbjct: 226 GEPNRWRATVTVDPDAETPTNTLVDVGETNNATNTFIIQFDNLGTIQSVEDEAGD----- 280

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  ++ + + +  +  +            ++   N     +   +    Q+    S
Sbjct: 281 -------VLDAGALQVQVGFDVPEATIPPGEAAVRQTFNLNLGQVGSVVDAVTQFAERSS 333

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     +   Y +  N+      +A       L +       
Sbjct: 334 TKVFRQNGYTMGYLEGFKIDQNGVITGVYSNGNNRPLGQIALATFVNPGGLEKEGETM-- 391

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +     S   ++   +      +         V+L E  + +I  ++ +  +++ I  +D
Sbjct: 392 FRVSLNSGDPNVGPPNFAGKGKLIAGALEMSNVDLAEAFTDMIVTQRGFQANSRTITTSD 451

Query: 470 KMLQTLLEGVK 480
           +MLQ LL   +
Sbjct: 452 QMLQELLTLKR 462


>gi|254516995|ref|ZP_05129053.1| flagellar hook-associated protein FlgK [gamma proteobacterium
           NOR5-3]
 gi|219674500|gb|EED30868.1| flagellar hook-associated protein FlgK [gamma proteobacterium
           NOR5-3]
          Length = 639

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/461 (14%), Positives = 149/461 (32%), Gaps = 26/461 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  V N   +   +  +  ++   NI N + + + R+                    VT+
Sbjct: 1   MADVLNIGTSALLSLQRAISTTGHNIANVNTEGFSRQRVEFAALEPQLSGAGFVGSGVTI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                         +   +S+      L       + + A+   +      + +   S++
Sbjct: 61  AAITRSYDQYLAGDVLDRTSSAAGAATLGDLSGRVDDILANP--DTGLGPVLDEFFASVQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N       + ++  AE +   F         +  +A+  I+  +  +  F S +  
Sbjct: 119 DVANNPGSLPERQVLLGQAEVLADRFQYLNDRFAGLDQEANIRIDNSVREINAFASGIAD 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I  +T  +     +D LD RD LL ++SEI+G++T+ + +  + V   +G  L   
Sbjct: 179 LNDRIVSETVRSGGQQPNDLLDARDQLLNRLSEIVGVTTVDQGDGAVNVLVGNGQALVVG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     + + VT  +  I   G+   ++ G  +  G++ A+L  R  V+   ++ L
Sbjct: 239 NSVTELETFTDPFDVTRLNVGIA--GIAAQTDIGRFLSGGELGAVLDFRGDVLDGARSDL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADG-----IKDLDNKLCQGISETICVNPQYR 345
             +A  L  +F+++  +  +     G            +   N     IS  I       
Sbjct: 297 GLIATGLAATFNDQQALGLDLNGNFGGDFFRPLEPTVSESTSNTGTGSISAVITDPTNLT 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            +   L   G+          N++      +   D  +      P AG +  +  +    
Sbjct: 357 GDQYELSFDGAAYT-LRNTTTNVSTTGPGPSFSIDGVDITVSGAPAAGDDFLIAPVAQGA 415

Query: 406 NS----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           +     I       + S      S                V
Sbjct: 416 SLFDVVISDPRAFAAASPLRSSTSLANAGSGQLESLAVSDV 456



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/437 (9%), Positives = 109/437 (24%), Gaps = 14/437 (3%)

Query: 58  ENKNMFDKVL-HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               + +++      + + Q     +            +       +      +  +   
Sbjct: 201 ARDQLLNRLSEIVGVTTVDQGDGAVNVLVGNGQALVVGNSVTELETFTDPFDVTRLNVGI 260

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                        +  E+    +     +   R+D         +      +    +N  
Sbjct: 261 AGIAAQTDIGRFLSGGELGAVLDFRGDVLDGARSDLGLIATGLAATFNDQQALGLDLNGN 320

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                    +        +     IS +I   T +  +   + +     TL  T      
Sbjct: 321 FGGDFFRPLEPTVSESTSNTGTGSISAVITDPTNLTGDQYELSFDGAAYTLRNTTTNVST 380

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----- 291
                S+++      +            + V +G     + I D       + L      
Sbjct: 381 TGPGPSFSIDGVDITVSGAPAAGDDFLIAPVAQGASLFDVVISDPRAFAAASPLRSSTSL 440

Query: 292 ------EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                 ++  + +   +                +  G+   D     G            
Sbjct: 441 ANAGSGQLESLAVSDVASLPLAGNIVLTFNPDALGAGVPGFDVSGIAGGPIAYDPATDGN 500

Query: 346 SNPSFLRDGGSVSKKF--LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                L D            +  ++    D      ++     +           +  + 
Sbjct: 501 GVDVTLGDINFTLSGIPEDGDSFSIENNVDGSGDNRNALALAALQTERTLNGGTASYQDA 560

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +  +   +         + +    + ++  GVNL EE + LI+ +Q+Y  + +
Sbjct: 561 YASLLADVAVSTRQAKSAASTEGALLDQSRAALNSAQGVNLDEEAANLIRYQQAYQAAAQ 620

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I   D++ QTLL   +
Sbjct: 621 VIAVADEVFQTLLNATR 637


>gi|229029418|ref|ZP_04185501.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1271]
 gi|228731877|gb|EEL82776.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1271]
          Length = 432

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 149/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNFGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +       S  +  E M       NS +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLAYYNYKNSVLSRVESMVGTTG-ENSLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAVDTKGQ-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +                         +      ++ + +NP++ ++ 
Sbjct: 286 NLEDLMSSMKNEVNTVMGK--------------------DFFVGDYAKELKLNPEFANDF 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K      +                              ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDDDYKDG-------------------------LSYKKALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S+ +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VKVASDKSEVNGYQKNHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAISTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|261318809|ref|ZP_05958006.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|265987184|ref|ZP_06099741.1| FlgK [Brucella pinnipedialis M292/94/1]
 gi|261298032|gb|EEY01529.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|264659381|gb|EEZ29642.1| FlgK [Brucella pinnipedialis M292/94/1]
          Length = 382

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 178/375 (47%), Gaps = 5/375 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAG 370
           +    + +NV+  AG
Sbjct: 361 ANGANYKYNVQGAAG 375


>gi|170768131|ref|ZP_02902584.1| flagellar hook-associated protein FlgK [Escherichia albertii
           TW07627]
 gi|170122897|gb|EDS91828.1| flagellar hook-associated protein FlgK [Escherichia albertii
           TW07627]
          Length = 547

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/548 (12%), Positives = 162/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQAKSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        LHA  +            +  + M       +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLHAAQTQSSGLTSRYEQMSKIDNML--SGSTSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGASVNQVNNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +     D LDQRD L+ ++++I+G+   V+++    +  ++G +L ++
Sbjct: 179 LNDQISRLTGVGAGASPDDLLDQRDQLVSELNQIVGVEVSVQDSGTYNITMANGYSLVQS 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSTDPSRTTIAYVDASAGDIEIPDKLLTSGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +       +         +   
Sbjct: 299 GQLALAFAEAFNTQHNKGFDANGKEGGNFFAIGKPAALQNSNNKGNSALSATVTEGSAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +   +F    +    T      +    +  
Sbjct: 359 ATDYKISFSNNQWQVTRLASNTSFTVMPDANGKVSFDGMELTFTGTPKANDSFTLKPVSD 418

Query: 411 ----------------LEKNRSDSHDLHMKSQVVFN------------------------ 430
                           +  ++      +   Q + +                        
Sbjct: 419 AIVNMDVLITDEAKIAMASDKDAGESDNRNGQALLDLQNNSKTVGGTKSFNDAYAILVSD 478

Query: 431 ------HISESYSNTVGV--------------NLQEELSFLIKVEQSYNISNKLIMFTDK 470
                  +  S ++   V              NL EE   L + +Q Y  + +++   + 
Sbjct: 479 IGNKTATLKTSSTSQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANA 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 IFDALINI 546


>gi|303240171|ref|ZP_07326691.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus
           CD2]
 gi|302592262|gb|EFL61990.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus
           CD2]
          Length = 535

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/530 (15%), Positives = 179/530 (33%), Gaps = 55/530 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVT 51
              FN A      A +    I  NI N +   Y R+  + T                   
Sbjct: 5   FFGFNVAVRGLYTAQRNLDVINNNINNVNTPGYSRQQAVQTAAKPMAIYDGTGMVGTGSD 64

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V           D    + + + G+    ++  A  E+   ++  ++     + +   SL
Sbjct: 65  VKAIERVRDEYLDFKYWSENVSYGEWNAKEAMLADMEVTF-NEPSDSGFNTILDEFFSSL 123

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  +K+ S + +   V +    V + FN+ A   ++++ D +  IE  ++ +    +++ 
Sbjct: 124 QELAKDPSSEAVRTLVSERGVTVAKYFNSLATHFEELQIDVNDRIETAVTEINSIGTQIQ 183

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------RNNNDMVVYTSD 223
            +N  I       + A+D  DQR VL+ K+S+++ I              ++  +V T  
Sbjct: 184 QLNRQIYSAELDGNTANDLRDQRTVLVDKLSKLVNIEANEVVAGKLPSGKDDKRLVITIS 243

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-- 281
           G    +         K     +  E +   +  V        A+  G++K  + IRD   
Sbjct: 244 GKAFIDHFDLSKLAVKQRGTKLNPEEDVPNLYDVGWEDGNNLAIRGGELKGYIDIRDGND 303

Query: 282 ---------VVPIFQNQLDEMARVLIGSFS----EKDPIAGNSENVPG-LFIADGIKDLD 327
                     +P +  +L+E  +    +F+    + D          G            
Sbjct: 304 GDNGSPMYSGIPTYIKKLNEFVQTFAMAFNEGYIDNDTSGTIEAGEDGLGHADGYGLGSA 363

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           + L       +       S+  F+    ++S          A    +     +  NK   
Sbjct: 364 SSLGTRFFTMLGEGKNALSSTDFINGKTTISGVVDRYKNITAKNFAVSRDILEDSNKIAT 423

Query: 388 FDPVAGINTNVTLL------------------EYARNSIGWLEKNRSDSHDLHMKSQVVF 429
            D +      V +                   ++ ++ +  L  +   +  +    + + 
Sbjct: 424 SDNLDEEGNIVNINKLIEMRTNSHMFSEGAPEDFMKSIVTTLGIDSQQAIRIASNQEAIV 483

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             I    S+  GV++ EE+S L+K +Q+Y+ + +++    ++   L+  V
Sbjct: 484 EQIENRRSSDSGVSIDEEMSNLVKQQQAYSAAAQMVNTMAEIYDILINRV 533


>gi|15606764|ref|NP_214144.1| flagellar hook associated protein FlgK [Aquifex aeolicus VF5]
 gi|2983977|gb|AAC07523.1| flagellar hook associated protein FlgK [Aquifex aeolicus VF5]
          Length = 426

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/483 (14%), Positives = 156/483 (32%), Gaps = 63/483 (13%)

Query: 3   LLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRD-TMTTISPENVTVVTQRSENK 60
           +    FN          +      RNI NA  +NYV  +  + +     +T    R    
Sbjct: 1   MFGASFNIISQALEVYKKMIDVKNRNIANAQEENYVAEEPVVQSDLYSGITFQEVRRIQN 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
             F    +   S +      + + +  E +  +    N    Y+++   S +   K  + 
Sbjct: 61  FNFINTRNEKLSYVSYLEERRDYLSKLESVFQELSQGNGLIDYVNRFFQSYQELMKEPTN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI--- 177
           +      +++A+ +V+   +   E+ +   + D  I   +  +   + ++  +N  I   
Sbjct: 121 EGAKSQFLESAKMLVKTIKSRYGELTRSYNEIDYTINDYVRKVNELVKKIYKINKEIFFK 180

Query: 178 -KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                    D    LDQRD  L+++S+ I +         + VYTS G  L +       
Sbjct: 181 YAQTKVRGEDYKTLLDQRDKYLKELSQYINVRAQEDELGRIKVYTSKGFVLVDFSENFFT 240

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +               +      S+  + V  G+IK L+  +   +    N+LD +   
Sbjct: 241 LK----------YEGGKLIYEKDESDITNVVESGQIKGLIDAK-GDIENLINKLDNLRDY 289

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L+                                       + +        S       
Sbjct: 290 LVN-------------------------------------NVKIPVNGGGEASVFSGASI 312

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   N++   G  D       + N    ++   G            +   ++   ++
Sbjct: 313 NDFEVDANLETNLGNLDFSRTQDYAQNALTWWEEAKGRTK---------DITNYVATQKN 363

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                +   + +++ + +      GV++ +E   +++++++Y    K++   D+M +TLL
Sbjct: 364 ALDSEYEVEKALYDSLEKKILERQGVSIDQEFMEIMQIQKNYEAVAKILPRIDEMFRTLL 423

Query: 477 EGV 479
             V
Sbjct: 424 NMV 426


>gi|311694367|gb|ADP97240.1| flagellar hook-associated protein FlgK [marine bacterium HP15]
          Length = 676

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 129/370 (34%), Gaps = 16/370 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52
           +  +         +      +   NI NA+   Y R++ +                 V V
Sbjct: 1   MAGLIGIGLTGILSHQAALNTTGNNITNANTPGYSRQEVLFETQEGQRTGAGTIGSGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R        + +   S+  G+Q  L S     + +   +  +   ++ ++    SL+
Sbjct: 61  ADIRRLANEYLVQQVREDSTLYGEQEALNSELTRLDNLLGGE--STGLSNALNNFFASLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     + V+  A++VV  F    +E  + R     +++  + +    L  +  
Sbjct: 119 NAAEDPTSLPQRQLVLSEAQQVVNRFQALNQEFIQQRESIKTQMQQGVKDANTLLKSIAE 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N AI      A     ++ LD+RD  L+++SE+I I     + + + V  S+G +L   
Sbjct: 179 LNLAISESPGIAQGQMPNELLDKRDEKLRQLSELISIKVSPADGSQVNVSLSNGLSLVVG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   + N+   T       +       N    +  GK+  LL+     +    ++L
Sbjct: 239 SNASTLGTRENAEDPTRL--EFTLSNGGRLVNIDEQITGGKLGGLLRFDTEGLKPAFDEL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  L  + + +  I  + E   G      I  L+ +  + +                
Sbjct: 297 GRIAIALSDTMNHQHEIGMDLEGELGGLFFTDINSLEAQRSRVVPNGNNAPSTNGQLAVE 356

Query: 351 LRDGGSVSKK 360
           + D  ++   
Sbjct: 357 ITDSSALPAG 366



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 88/375 (23%), Gaps = 16/375 (4%)

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L  T+    E  +                 + +    + N     S    +   I   +
Sbjct: 302 ALSDTMNHQHEIGMDLEGELGGLFFTDINSLEAQRSRVVPNGNNAPSTNGQLAVEITDSS 361

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A            D    ++ +     T+ +        +      F        F   +
Sbjct: 362 ALPAGRWTLQFSGDGRSYELIDQGTGRTVNQGRLPDPPQSEISMPGFNIRVEGGTFNAGD 421

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            Y +    N     G+VV+  +  A                  I Q  +  +      S 
Sbjct: 422 KYLIQPSRNAAESIGLVVNREEDLAFASPVRATTGDDNIGTGKIDQGTMLNVRNPFTNSL 481

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G   N P     D                          P    +  S +   
Sbjct: 482 LPAFQSTGQLANGPITVTFDDPGTGLVFTVTDGGGNPIGPANRPYTPGVANELFSDNPAD 541

Query: 362 L----------------WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                             +   +    + ++   ++     +         +    E   
Sbjct: 542 GAEYQGFQFKITGQPADGDTFEINYNSNGVSDNRNAELLAALGTANTLNGGSQNFSEGYA 601

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  +      S       + +    +    +  GVNL EE   LI+ + +YN S +++
Sbjct: 602 GLVEDIGVKTRQSQLDVDAGKTLLEQSTNQRESVSGVNLDEEAGRLIQYQAAYNASAQVM 661

Query: 466 MFTDKMLQTLLEGVK 480
                +  TLL+  +
Sbjct: 662 SVAQDLFNTLLQSFR 676


>gi|206889963|ref|YP_002249841.1| flagellar hook-associated protein FlgK [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741901|gb|ACI20958.1| flagellar hook-associated protein FlgK [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 554

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 140/390 (35%), Gaps = 21/390 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49
           MSL A+F+  +       +    +  NI NA  + Y R+D +                  
Sbjct: 1   MSLTALFDIGKTGVLTYQKALEVVSHNISNAATEGYTRQDVIFQNMSSGILSLSGVTGRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V +   R    +  D  L   SS +    ++ +     E +  +D    + ++ I+   +
Sbjct: 61  VKLEDIRRMYDSFIDLQLKTESSNLAYWDVVYNGMLRLENIF-NDASETAFSNSINDFFN 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + +  S+N S       ++D A  + +  N S + +   R +  K+ +  ++ +  +L +
Sbjct: 120 AWQELSQNPSGTAERTLLLDKANYLTKRLNLSYKSLIDERQEIYKDTQSLVNQVNNYLDQ 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N+ I     S     D  DQRD L++++++I+ I+    N+    +    G  L +
Sbjct: 180 INELNEKIAASPGS----LDAKDQRDNLVKQLNDIVQITYFEDNSGRYSI-LLGGMPLVD 234

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                     ++S     ++    ++ V  S +    +  GK+KA + +RD  +P +  +
Sbjct: 235 GGKVYHLSTALDSK----QNMQFSLETVSGSIDVTRLIQGGKLKAEIDLRDETIPEYMEK 290

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+ +   L  + + +       +   G      + DL        +          +N +
Sbjct: 291 LNMLVFDLTEAINAQHRQGYGLDGTTGNNFFSQLYDLTVSSPSSPTSPYSDISFKINNVN 350

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                    +     V       D      
Sbjct: 351 TNTYDEYQVEFDGSAVPPAWTVTDNTTSSS 380


>gi|160939640|ref|ZP_02086988.1| hypothetical protein CLOBOL_04532 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437431|gb|EDP15195.1| hypothetical protein CLOBOL_04532 [Clostridium bolteae ATCC
           BAA-613]
          Length = 484

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/498 (13%), Positives = 155/498 (31%), Gaps = 44/498 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------PEN 49
               A+       +    +  NI N+  K Y R+   T                    + 
Sbjct: 2   GLETAKRGIQVNQKAIDIVGNNISNSKTKGYTRQRLDTVSVHTYGSSQYNYSSIPLAGQG 61

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLR 108
           V             D         +G      +     E + +D +         ++ L 
Sbjct: 62  VDARGVAQIRNPYLDAKFRQQYGDVGYYDQKAAIMDQIEGIISDPEVEGTGIKAALTTLS 121

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +L  +S++  ++     V++  + V Q  N     ++ +      ++ + + ++   L 
Sbjct: 122 QALADFSQSPYQETNANIVMNAFKGVTQVLNEYDANLKTLMEQTKNDLSVAVEDINTKLD 181

Query: 169 ELTVVNDAIKFKTASKHD-------AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
           +L+ +N +I  +  S +D        +D LDQR+V+L  +S    +      +  + V  
Sbjct: 182 QLSELNSSIAHEIFSNNDYDGVNYGPNDLLDQRNVILDDLSRYGDVQVTDLEDGKIQVKI 241

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            +G  + +        +K+N  +          +                +     I ++
Sbjct: 242 -NGKVVVDASGASYTNDKLNIGSDGVTLTWNSNNQNANLGAGAIRGFTDMLTGADPI-NA 299

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +P +QN++D  A+ L   F+ K        + P                +  +  I ++
Sbjct: 300 GIPYYQNKMDNFAQTLADVFNNKI-----HADDPDFPDKYKFLLQGGVDGKVTAGNISIS 354

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            Q+  + S++    +                +L N         F  D   G     T  
Sbjct: 355 DQWADDVSYIIRKQNP-------------DGELDNQDILDMKAAFEQDFNFGGEYTGTFS 401

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           E+  +    L      +      S  +            GV+L EE   ++   ++Y   
Sbjct: 402 EFITSVTNTLGSGIKTNSARMSASLAIAESADSERMGVSGVSLNEEGISMMTYNKAYQAL 461

Query: 462 NKLIMFTDKMLQTLLEGV 479
            +L+   D+ L  ++  +
Sbjct: 462 GRLMTTMDEQLDMIINKM 479


>gi|152975150|ref|YP_001374667.1| flagellar hook-associated protein FlgK [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023902|gb|ABS21672.1| flagellar hook-associated protein FlgK [Bacillus cytotoxicus NVH
           391-98]
          Length = 440

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 143/492 (29%), Gaps = 64/492 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------E 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQVGLKTTQQNLTNIHTPGYVRQAVNYGSVGANNGNTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V+        +  K  +   S +     +    +  E +       NS +  +    
Sbjct: 60  GVQVMGVDRITDEIKTKQYNEQLSQLSYYGYMDDALSRIESIIGTTG-PNSLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N   R++++       +I+  +    R   
Sbjct: 119 NAFREVAKNPEQANYYDTLIAATGKFTNQLNRIGRDLEEAEMQVSADIQGHVDEFNRLAE 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N+ I+   A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAKANENIR--EAGLKVPNQLLDERDRIITEMSQYANIEVSYESGNPNIASVRISGVLA 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            +       +        S         +       +   K KI               N
Sbjct: 237 VSGQDTYPLQLQKEKEPISVQISGTDIPLKSGKISSAIDMKVKITGNKDKHVKGYKDSLN 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +L    +  +    +KD   G+                       IS+ I +N +  ++ 
Sbjct: 297 ELMSAIKDQVNGVMKKDFFVGD-----------------------ISKNIRLNSELANDV 333

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     +K+                   D F                          
Sbjct: 334 SKMKISTETAKELAGISDKEYTDGLSYKQALDKFLVG----------------------- 370

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S +         +F    +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 371 --IASDKSAASAYKDIHTNLFTDTEQEKMSMEGVNMEEEMVNLMAFQKYFVANSKAISTM 428

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 429 NEVFDSLFSIIR 440


>gi|167770235|ref|ZP_02442288.1| hypothetical protein ANACOL_01578 [Anaerotruncus colihominis DSM
           17241]
 gi|167667557|gb|EDS11687.1| hypothetical protein ANACOL_01578 [Anaerotruncus colihominis DSM
           17241]
          Length = 520

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/512 (13%), Positives = 168/512 (32%), Gaps = 40/512 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TISPE 48
            F+ A+     A +      +N+ N D+  Y R+                       + +
Sbjct: 2   GFDVAKRGIMTAQKGIDITGQNLVNWDSAGYTRQRVEQVAVGVNPYTSRYGSNRIGTAGQ 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISK 106
            V ++          D      +S        Q      E + +D     ++     ++ 
Sbjct: 62  GVDILGIGQTRDKFLDARFRELTSEASYYDQAQKILGDLESVISDFEPDSDSGIGAMLNG 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           + ++L+  ++    +     V    +++ Q     + ++ ++      ++E+ + N  + 
Sbjct: 122 ILNALQPDTEQADSETYASLVRSAFKDMTQTLQYLSGKLDRVAEQQKFDLEVSVENFNQI 181

Query: 167 LSELTVVNDAIKF----KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           L +++ +N+ I         S +  ++ LD+R+ LL ++++   I      +  + +   
Sbjct: 182 LEKISGLNEVISNDRNVLQNSHYGPNELLDERNYLLDQLAQYGEIGVTTNVDGTVTIEMD 241

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPI-----FIDGVVVSSNQGSAVPKGKIKALLQ 277
             T L  +    +   +  + TV  +           DG++ ++          I    +
Sbjct: 242 GHTILDGSKYDAMEMSENPNGTVVLKWVSSGDKIQVTDGILKATTDFLNGRGPNIIQEGE 301

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                V  +Q+ LD  A  L+   +   P          +  ADG   LD          
Sbjct: 302 TTYRGVRYYQDALDIFAHQLVEVANNSIPNYQVDAAGELILDADGNPVLDPDQPYRKLLG 361

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-------- 389
              +    +    +   G V+   +                 DS +  ++ D        
Sbjct: 362 SISDQPDANGKYVVDPDGPVTADNISITDEWNADASYFVARKDSLDNKYVVDLYNKLKND 421

Query: 390 ----PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                  G +   T  +Y       L ++++   +    S  +     +S     GV + 
Sbjct: 422 DNVFQGRGESFTGTFKDYLTGYSATLAQDQNYYKNRLQSSNNLLYTTEDSRDEVSGVVMD 481

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           EE++ ++  ++S   +++L+   D+ L  L+ 
Sbjct: 482 EEVANMMLYQKSLQAASRLMTTLDEALDVLIN 513


>gi|187778686|ref|ZP_02995159.1| hypothetical protein CLOSPO_02281 [Clostridium sporogenes ATCC
           15579]
 gi|187772311|gb|EDU36113.1| hypothetical protein CLOSPO_02281 [Clostridium sporogenes ATCC
           15579]
          Length = 624

 Score =  160 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 19/258 (7%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA+ + Y R+      +             
Sbjct: 4   MSGLFGTLNIGKSGMFAQQGAINTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 63

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 64  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFSSRHKFLSQIENIL-NEPTDVGISK 122

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+    S N         V++ A  +    N +  E+ K++ +  +EI+  +  
Sbjct: 123 LFGKFFDAWHDLSINPQNSNAKSVVMEQASALADELNHTFNELSKLKENTQREIQQTVFE 182

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L++L  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 183 VNSILNQLNQLNQEIVQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGINLSTS 242

Query: 223 DGTTLFETVPRDINFEKM 240
           +    ++     +     
Sbjct: 243 NHAKDYQDKTSPLGGTPP 260



 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/425 (10%), Positives = 123/425 (28%), Gaps = 34/425 (8%)

Query: 81  QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
                 ++++                      S S +  +     + +      +Q  + 
Sbjct: 208 NDLMDRRDLLLDKLSAKFGIEIDKENFEGINLSTSNHAKDYQDKTSPLGGTPPQIQGKDG 267

Query: 141 --SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
                 + +     D      I ++     +    N   +       D     ++R + +
Sbjct: 268 KFYDANLVQRINPEDVYRFSYIKDITPKDKQKLGENGKYEVTYYVGGDTKSEDNKRTITV 327

Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
              SE         +   ++    +G  +             +     S           
Sbjct: 328 TINSEE---EFKRLDEGRVLWTDKNGDVVKIPNNSS-----PDDKDNQSTETIKNNGSCD 379

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
            ++ +    P G++K  + +++  +  +Q QL+++A+ L  S +     + +  +     
Sbjct: 380 FTNLKLFEPPSGELKGQMSVQEE-IDNYQEQLNKLAKALAFSVNAIHTQSLDPASPTDNA 438

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
           +   I   +      I+       +           G        + K       + + +
Sbjct: 439 LNFFINGENPNNEMEITAGNIALNKAIKENPMKIIAGVTPNSGEGDGKRALAISQIKDVF 498

Query: 379 CDSFN-----------------------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +                       K    + +      +T+  Y  + IG L  + 
Sbjct: 499 MSIQDIKKDTDRKKFLEKFFKPNDEFEFKGTTLNTIGKDTNGMTMNTYFNDIIGGLGVDE 558

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +++  +      +     +S  +  GV+L EE + L++    Y  + K+I   D++L  +
Sbjct: 559 AEAKRMVKNQATLLAGFQQSRDSVSGVSLDEEFANLVQFNHCYQANAKIISTVDQLLDVV 618

Query: 476 LEGVK 480
           + G+K
Sbjct: 619 INGLK 623


>gi|32490795|ref|NP_871049.1| hypothetical protein WGLp046 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166001|dbj|BAC24192.1| flgK [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 545

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/550 (15%), Positives = 182/550 (33%), Gaps = 78/550 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  ++  A N          +I +NI N+ + +Y +   + + S                
Sbjct: 1   MFNLYRLAGNALKAGEIALDTIGKNIANSTSSSYHKEKAILSASEGKLISEGYIGNGAHY 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                    +  + +   +S+              +   ++   N      I+ + D LE
Sbjct: 61  NRLTRIQDELMSEKMRYANSSFYYAFEKNKKIKFLDYFFSE--NNKFLEGEINNVFDDLE 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S+    +I  ++   N + +  +FN   +E++ +  +   EI+L IS++    S+L+ 
Sbjct: 119 FISQEPFNEIYKESAFLNFKSLNNHFNFIGKEIKDLENNIYNEIKLNISDINSLTSQLSS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I     ++  + D LD+RD LL +IS+ IGIS      + + V   +G  L +   
Sbjct: 179 INKEILKSK-NEKISLDLLDKRDQLLSEISKKIGISVNFNEKSTVNVALENGFFLVDKDQ 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQLD 291
            +   +        ++ +  + +         S ++  G+I  L+   +  +PI + +++
Sbjct: 238 SN---DLKIKKYFENDFSLFYENSKKEFIQIDSDSIQNGEIGGLISFYNKEIPIIKEKIN 294

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD------------------------ 327
            +   L   F+E +    +S    G  I       +                        
Sbjct: 295 FIIFSLAKRFNEVNKSGYDSNKSIGQDIFSYSSFKNKLGLENKGNLEIHDINTKDNNHPA 354

Query: 328 ----------NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                       + +         P    + + +            N     G    I H
Sbjct: 355 IYELFFQSNKWFITKKSEGKTTEIPYQSLDENSINKIIFDKINLHINGSPEDGDRIQIRH 414

Query: 378 YCD---------------------------SFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D                             +          I  N T  E     I +
Sbjct: 415 LLDVSEDIKLNLISGKEIAHSSKNENTNNNENSLKLANIQNEKIINNETFTENYAKFISY 474

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           + +  ++   +    +++F++I  +Y N +GVNL EE   +    Q Y+ + ++I     
Sbjct: 475 VGETANNIQSIENNQKIIFDNIVSNYENKIGVNLDEEYVQIEFYRQYYHANAQIIKVAST 534

Query: 471 MLQTLLEGVK 480
           +  +LL  V+
Sbjct: 535 LFDSLLNVVR 544


>gi|83647167|ref|YP_435602.1| flagellar hook-associated protein [Hahella chejuensis KCTC 2396]
 gi|83635210|gb|ABC31177.1| Flagellar hook-associated protein [Hahella chejuensis KCTC 2396]
          Length = 892

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 145/387 (37%), Gaps = 15/387 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   V N        +    A+   N+ NA+ + Y R+      +             V
Sbjct: 1   MS-TNVINIGLTGLKASQTALATTGNNVSNANTEGYSRQRVEFEATPSQFIGAGYLGTGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V              L + +S   +   +++  +  + + AD       +  +S    +
Sbjct: 60  GVADISRMTNQFLVSQLRSDTSMFSEIDKVRANVSQIDSLLADPT--TGLSPGMSAFFQA 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+  + + S     + V+  AE ++  FN     +     + D+++   I+      S +
Sbjct: 118 LQGAADDPSSIPERQLVLTQAEGLINRFNVLFNRLDSQLNNIDQDMRSLITEANSLASGI 177

Query: 171 TVVNDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             VN AI     +    D +D LD+RD +++++SEI+ ++ + + +  + +    G +L 
Sbjct: 178 AQVNQAIVSARGSTQGKDVNDLLDKRDQMIRELSEIVSVTVVEQTDGQLNILVGKGQSLV 237

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                +    ++++   T +   +   G   ++   S +  G++   L  RD ++    N
Sbjct: 238 IGSHANSMGLQVSNTDPTRQEVALTESGGSGTNIITSEITGGELGGALLFRDQILQPSFN 297

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  +A V+  + +E+  +  + EN  G    + I   +N   +  +      P  R   
Sbjct: 298 ALGRIAVVMADTINEQHQLGMDLENRLGGNFFEDINSENNARQRVTANEGNALPNDREIS 357

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLI 375
             + D  +++ K            D++
Sbjct: 358 VEIIDTSALTTKDYQIQFTGPSDNDIL 384



 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/371 (10%), Positives = 95/371 (25%), Gaps = 22/371 (5%)

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                   + +     + +     A          A+ V     D +  I    S +   
Sbjct: 541 FTADEGQTAVSAEGVSVAQVPAPVASPGPYANGYGAQTVTIKNRDLETGIVTTQSPIN-- 598

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
                     I    +++  A     +  V     +E+   + +          T +G T
Sbjct: 599 ----------IAANASAEEIASALNSRNGVSASAYTEVEISNFVDDGGGTAPGLTINGET 648

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L              S+T       I  +  +  +   +    G +         +    
Sbjct: 649 L--------TAPVGGSFTPDDYVELINSNSNLQDAGVVAWSDGGTLTVRALTGKDITVEV 700

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V I + ++         +   +     ++  D       +  I +      
Sbjct: 701 TGD--ATDSVDIATANDTVATTIAGGSGTSVGGFVDVQLDDGVRLTADNNNIFLPAPVAQ 758

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +                +   +    + ++   ++     +           T  E    
Sbjct: 759 SSFRGYQASISGTPSQGDTFTIEYNENGVSDNRNALKMVGLETEGTIGGNISTYNEAYSQ 818

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +    S +      +Q +       +    GV+L EE   LI+ + +YN S +++ 
Sbjct: 819 LVEVVGSTASQAQLDTESAQSLLRQSENRWQEVSGVSLDEEAGRLIQFQAAYNASAQVVS 878

Query: 467 FTDKMLQTLLE 477
              ++  TLL 
Sbjct: 879 IARQLFDTLLN 889


>gi|150020229|ref|YP_001305583.1| flagellar hook-associated protein FlgK [Thermosipho melanesiensis
           BI429]
 gi|149792750|gb|ABR30198.1| flagellar hook-associated protein FlgK [Thermosipho melanesiensis
           BI429]
          Length = 846

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 129/425 (30%), Gaps = 33/425 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           SL    N        +      +  NI NA+   + R+  +                   
Sbjct: 5   SLFGALNTGLLGIYTSKLAMNVVSHNIANANTPGFSRQVPIIRTMPPIPATTLTQPSVPL 64

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V   +       D      ++       + S     E + A +  ++   +  
Sbjct: 65  QIGTGSKVKDIKRIRDQFLDIQYRQVNNKYNYWDSITSNLHFIEQLLA-EPGDSGIRYLF 123

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
             +   +E    + +     + ++  AEE V+N       ++++R D D EI   +  + 
Sbjct: 124 DSMWSGMEEIITDPTNSAAKRELVSRAEEFVKNIKDLYFRLEQLREDLDYEISQRVEQIN 183

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             +  L  +N  ++   A K   +D LD+RD +L ++S +  I      +  + +   D 
Sbjct: 184 SMVKRLADINAKVRLSVALKSTPNDLLDERDRILDELSTLADIYYTEDASGQITLRIGDQ 243

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L  +    +   +            IF+    V          G IKA L +RD ++ 
Sbjct: 244 IVLTGSDINKL---RALERPYGKGFKEIFVSNSKVDI------HDGSIKAALDLRDKIIV 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + N+LDE    L   F+       N +            + DN     +          
Sbjct: 295 KYMNRLDEFVLYLTDKFNLTHRDGFNKDGSVTGLDFFSQIEADNIENSVLFRIAGSKRVE 354

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +++    +       N  N       I+     F    +      +N+  T+ ++ 
Sbjct: 355 GGPINYISGMSNR------NNVNDITTKQFIDQGSIVFFDGSLNTTAISVNSGDTIQDFM 408

Query: 405 RNSIG 409
                
Sbjct: 409 NYVSS 413



 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/454 (12%), Positives = 143/454 (31%), Gaps = 40/454 (8%)

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL--RDSLESYSKNLS 119
            FD  L+  + ++     +Q F           ++  +  +  + L    S  +    L+
Sbjct: 386 FFDGSLNTTAISVNSGDTIQDFMNYVSSAGLWFNFETALHNGSTYLLRMTSSSNLKNTLA 445

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            D  G        +          + +    D   +I+++       ++    +ND    
Sbjct: 446 LDFNGNMFNTMGFDTKDVNIFVINQSEFNVQDGTYKIKIDGVEANITINSGYTLNDLAND 505

Query: 180 KTASKHDAHDFLDQRDVLL--QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
             A+   +       + LL     S+   I+ +   + D ++  ++   +      +   
Sbjct: 506 LNANFSSSIRAFIHNNKLLILPTKSKEFDINRLEIQDTDGLLTQAN-LHIETYKALNTEK 564

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E +++    ++   I I    +  +      K  +  L +    ++         + R  
Sbjct: 565 ETLDNILNRTDPFKITIGATEIEIDPTQLTLKDFVAKLNEAGTGILFDITPHNKVVIRGT 624

Query: 298 IG-------------------SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
                                 F + D    N  N   +F+    +    +     ++T+
Sbjct: 625 RSMNFKIDKTIKGPEELFVKLGFIDADSDPTNDWNENYIFLNPFDEPKTLRERFSKADTL 684

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI---- 394
            V+    + P    +   V+     N + +A    +I+   +   K F     A      
Sbjct: 685 FVDKIITNEPFRFVEKFKVNSTVSSNPETIAVDYGIISDNTNWDAKVFNPTGQANTTIME 744

Query: 395 ------------NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                       +   +  EY    +  +      +  +   + +V   IS       GV
Sbjct: 745 YLSSMRFEKILNDGRESFAEYLGGIVAEMGVEGETAMKMKNNTDIVMKDISNERERVKGV 804

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +L EE++ +IK + ++N S +++   D+M+  ++
Sbjct: 805 SLDEEMANMIKFQHAFNASARVMTAVDEMIGRVI 838


>gi|168187526|ref|ZP_02622161.1| flagellar hook-associated protein FlgK [Clostridium botulinum C
           str. Eklund]
 gi|169294577|gb|EDS76710.1| flagellar hook-associated protein FlgK [Clostridium botulinum C
           str. Eklund]
          Length = 678

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/447 (11%), Positives = 123/447 (27%), Gaps = 31/447 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L +  N  +               NI N++ K Y R+  +   +             
Sbjct: 1   MSGLFSTLNVGKRGLYAQQGALDVTSHNIANSNTKGYTRQRALMETTRPFGMPSMDNQVG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +   +       D  +   +S +GQ      + +  E +  ++  +   ++
Sbjct: 61  PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGVSN 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I K  D+ +  +K+         + + A  +    N +  ++ K++ +A + I+    +
Sbjct: 120 LIGKFFDAWQEVAKHPEGSNARTVLANQASALASELNHTYNQLVKVKENAQESIKQATFD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L  +  +N  I     S  + +D +D+RD+LL ++SE   +         + +   
Sbjct: 180 INNALDRVDKLNQQIMAVKVSGMEPNDLMDKRDLLLDELSEKFNVVVEQDKFGSINLKPK 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
              T+        +F    +                      + +         +    +
Sbjct: 240 YTKTVDGNSDIGNSFLVRKNPKDEVMRFSYIKSIEKKMEKDTTKIDVTGTAGKYETTCKI 299

Query: 283 VP------------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                           +   D+  +       E+     +   V            +   
Sbjct: 300 TYLKNGDKDRPATFNLKITSDKATKKEAREEIEEKLKRLDQSRVIWSTSNKDDDARNGLA 359

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                  I  NP    + +     G   +  L     +    D      +   K   F  
Sbjct: 360 VDKNGGVIGKNPVEFEDLALFDLKGDEYRGELKGFMTVQQDADDYIEQMNKLAKGIAFSV 419

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSD 417
               +   ++          +    +D
Sbjct: 420 NTLHSGRSSIGTVGTPMNNGVNVENAD 446



 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 90/293 (30%), Gaps = 7/293 (2%)

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES----N 250
           D    ++   + +     +  + +   + G                   T  +      N
Sbjct: 385 DEYRGELKGFMTVQQDADDYIEQMNKLAKGIAFSVNTLHSGRSSIGTVGTPMNNGVNVEN 444

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
             ++   V              K +L   D   P    +       ++   +E      +
Sbjct: 445 ADYMPFFVNGDIADEKYKIINGKKVLNYIDDTTPTKDIKTVADFDKILEGETEITAANIS 504

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS---NPSFLRDGGSVSKKFLWNVKN 367
                   +      +++      ++      Q  +     + LRD     +        
Sbjct: 505 VNRQIMDDVMQIKTRINDDKFALAAKNTKDGEQDGARALAIAQLRDKLFKIQNITKKTTR 564

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                +   +   + +     D + G    + +  Y ++++  L     ++  +      
Sbjct: 565 EEFIKENGANGKLNKDITLGLDTITGDINGMKIDSYFKDTVDKLGVQEQEAQRIVKNQGA 624

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    S+   +  GV+L EE++ +++ + +Y  + K+I  TD++L  ++ G+K
Sbjct: 625 LLKEFSQRRESISGVSLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGLK 677


>gi|149908753|ref|ZP_01897414.1| putative flagellar hook-associated protein [Moritella sp. PE36]
 gi|149808295|gb|EDM68234.1| putative flagellar hook-associated protein [Moritella sp. PE36]
          Length = 443

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/489 (16%), Positives = 171/489 (34%), Gaps = 56/489 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           MS+ +      +  N +      +  N+ N +   Y R D +++           + + V
Sbjct: 1   MSMFS---NGLSGLNASQIALNVVSNNVANVNVSGYSRLDAISSSRYSASNSNLSTGQGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + + R    N  +  L   +S  G  +   S+  + E + +++  N S    +  L  +
Sbjct: 58  EITSVRRIADNYLNNSLWRSNSNNGFSQAYSSYLMISEQLVSNE--NLSIAKGLDGLFSA 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+S +   S     + +I +A+ +   FN+    +     D  ++I   +S+     S++
Sbjct: 116 LDSATTEPSTIAPRQQIIASADALANRFNSLYSNLDIQSTDISQQINGMMSSANTMFSQV 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   +A+  +     DQR   + K++E++ +    + +  + +  S G  +   
Sbjct: 176 AALNSKIVESSATGGNVTALQDQRAETISKLAELMALDVSRQGDGSITLSLSGGQPVVLG 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   K + Y V+        +G V           GKI  +L  +  V+   + +L
Sbjct: 236 ASAATLSNKGSGYAVSIAGQNFTFNGDV----------GGKIGGVLSYKSHVLDPTKAEL 285

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D++A+    + + +  +  +                              +P   +    
Sbjct: 286 DKLAKDTADAMNNQLALGQDINVP----------------VGVGKPLFSYDPSNPAGSFQ 329

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           + DG       L       G    +    +  +                 L      +G 
Sbjct: 330 VSDGFKPKDLALGAAGTGPGDNTNLTALLEMKD---------------GFLGIYNGLVGS 374

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L     ++      SQ V  +      +  GVNL EE   L+K +QSYN + K+I   D+
Sbjct: 375 LAIKSGEARSSAQASQTVAENALAQRDSVSGVNLDEEGISLMKYQQSYNANAKVISMADQ 434

Query: 471 MLQTLLEGV 479
           +  TLL  +
Sbjct: 435 LFSTLLRMM 443


>gi|119715016|ref|YP_921981.1| flagellar hook-associated protein FlgK [Nocardioides sp. JS614]
 gi|119535677|gb|ABL80294.1| flagellar hook-associated protein FlgK [Nocardioides sp. JS614]
          Length = 466

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 137/492 (27%), Gaps = 54/492 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SPE 48
            +  N A                N+ N     YVRR  +                  +  
Sbjct: 5   FSSINTALTALRYQQVALDVASTNVANVGTDGYVRRRVVGETLGAASSPAVWSRSLETGS 64

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V           + D  +                 A  E     +   +     +S LR
Sbjct: 65  GVQAARVDRMTDALLDSRVRREHGRQTYLDSRAEALARVET-GLAEPGPSGVAAALSDLR 123

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +L         D      +  A  VV      A  +    +D    +   +       +
Sbjct: 124 ATLNDLGNAPGSDAARSQALSAAASVVDTVRLQAAHLSDEASDQRSHLLASVVEANSVAT 183

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           EL   N  I        D    +D+RD L  +++E+ G    VR +  M V       + 
Sbjct: 184 ELAATNRTIAAALGGGSDTTTLMDERDALALRLAELTGARGTVRADGSMYVELGGQALVD 243

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVV---VSSNQGSAVPKGKIKALLQIRDSVVPI 285
                 +      +   ++   P+  D       ++   +  P G + A + + D V+P 
Sbjct: 244 GNSAAQLVVTGGVAADGSATGGPVTFDLDPDTTGATTALTGTPGGDLGATINVLDDVLPS 303

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           + + L  +A+ L    + +  +  ++  V G  + D                        
Sbjct: 304 YISGLAAVAKDLADHVNAQHQLGYDANGVAGGKLFDYDPT-------------------- 343

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                           +    ++                    +    +   V + +  +
Sbjct: 344 ---------------DVLGTFDVVITDASKLAVSALPGGVKDGNNATALAAAVDVDDQYQ 388

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +       + +  +    Q + + +  +     GV+L EE   ++  +++Y  + +++
Sbjct: 389 RLVNGFGSTVASARQMAKNQQALTDQVDSAREQLTGVSLDEETVNMVAAQRAYEAAARVM 448

Query: 466 MFTDKMLQTLLE 477
              D +L TL+ 
Sbjct: 449 TTLDSVLDTLIN 460


>gi|238796909|ref|ZP_04640413.1| Flagellar hook-associated protein [Yersinia mollaretii ATCC 43969]
 gi|238719169|gb|EEQ10981.1| Flagellar hook-associated protein [Yersinia mollaretii ATCC 43969]
          Length = 547

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/548 (13%), Positives = 162/548 (29%), Gaps = 75/548 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            + N AQ+  ++A      +  NI NA    Y R++ M   +             V V  
Sbjct: 2   NLINLAQSGLSSAQSALNVVGNNINNAVTPGYSRQNIMLGQAGGKTTNVGFFGYGVQVNG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +       +  L   ++            +  + M  D+  N S T  +  +  +LE  
Sbjct: 62  VQRAYDGFINNQLRGAATEFFGLDGRYQQLSQIDNMLGDETNNVSVT--LDNIFGALEKM 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S + +     +  +     + Q FN+++  +  +    + +I   ++++     +L  VN
Sbjct: 120 SSDPASAAARQGALGQFNAISQQFNSNSNTLNGLEKSTNTQITQSVADINACAEQLAKVN 179

Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVR-NNNDMVVYTSDGTTLFETVP 232
           + I      +     + LD RD LL  +S+ +GI          + V  ++G  L     
Sbjct: 180 EEIAKIHGQTGEVPANLLDHRDSLLSTLSKQVGIRVNENVTTGRVDVTMANGMPLVSGDR 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  +++   +                    +  GK+  L + R+  +   +NQL++
Sbjct: 240 SYQLEASVSAENPSKTVVSYIDASGNKMLLDEEKMSGGKLGGLFKFRNEDLVDARNQLNQ 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD-----NKLCQGISETICVNPQYRSN 347
           +A  +   F+E +    +     G  I +           N     +  +     Q  ++
Sbjct: 300 LALQMANKFNEVNAAGFDKAGEAGGDIFNIANPTAIANRNNTSDTTLDISYTDISQVNAD 359

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL-EYARN 406
              +   G     +     +       I    +         P      N + +   A  
Sbjct: 360 DYTVTYKGPGQNDWEVQTSDGRKITPTIGAAGELEFDGISIKPNGTPKPNDSFVLNPAAG 419

Query: 407 SIGWLEKNRSDSHDLHMKSQV-----------------------VFNHISESY------- 436
           + G L    +D+  +   S                             ++E Y       
Sbjct: 420 AAGQLSVAITDADKIAASSSNDPNDQSNNENIKDMMDIKNATLIGTGTLTEGYASLVSSV 479

Query: 437 -------------------------SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                                        GV++ EE   L    Q Y  + +++     +
Sbjct: 480 GSSMTTLKANAATTAKAHDAIAYQQQAVSGVDMSEEFMNLQLYTQYYQANAQVLQTATTI 539

Query: 472 LQTLLEGV 479
             +LL   
Sbjct: 540 FDSLLSIK 547


>gi|83594184|ref|YP_427936.1| hypothetical protein Rru_A2852 [Rhodospirillum rubrum ATCC 11170]
 gi|83577098|gb|ABC23649.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 727

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 163/435 (37%), Gaps = 7/435 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR-----DTMTTISPENVTVVTQ 55
           MSL    +   +    A +    +  N+ N +   Y R+       +   S   V   T 
Sbjct: 1   MSLNLALSAGISGLQTAQKGLDLVSHNLANINTPGYTRKIFNPESVVLNGSGVGVQTGTI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                   ++ L    +   + +   S+    + +      NNS +H ++      ++ +
Sbjct: 61  ARRVDEGLNRDLREELAKYTEYKTKASYYQRMQDLFGKPASNNSISHNLTAFGQQFDTLA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
               +       + +A+E+   FNT +  +Q++R  AD++I   ++ +   L  +  +ND
Sbjct: 121 LETDKSTQQMATVRSAQELTSQFNTISTRLQQMRLTADQDIAGAVAEVNGHLKNIDTLND 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I    A+  D  D  D+RD+ +Q+++E++ ++T  R    +VVYT  G+TL +  P  +
Sbjct: 181 EITLGVATGRDVTDLQDKRDLEVQQLTELVDVTTFERPGGALVVYTKGGSTLLDADPIPV 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           +F   +S T            + V   +    +  GK+ AL+ +RD  VP +Q+Q+DE+A
Sbjct: 241 SFTASSSVTAWDSKGGGDFSAISVGGSDITGEIGAGKLAALIDMRDKTVPAYQSQMDELA 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                S ++      +   +   +               ++        + ++ +     
Sbjct: 301 GKFSDSINQIHNRGTSQPTIANSYSGTTTFIAPATQTMALTTGDVAITLFNADGTQKATT 360

Query: 355 GSVSKKFL-WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
              +        ++++     I  + +S     +    A ++ N  +      +   L  
Sbjct: 361 TLKTIVPAVATGEDISTVTTAIQTWLNSGTGGGLTGATATVDANGKVQIKLGTNTASLAF 420

Query: 414 NRSDSHDLHMKSQVV 428
               S      +  V
Sbjct: 421 RDQASTTAGSTAGDV 435



 Score = 83.5 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/428 (11%), Positives = 111/428 (25%), Gaps = 23/428 (5%)

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
             +   S   +    ++     NS +   + +  + ++ +    +  +     D  ++  
Sbjct: 300 AGKFSDSINQIHNRGTSQPTIANSYSGTTTFIAPATQTMALTTGDVAITLFNADGTQKAT 359

Query: 136 QNFNT------SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
               T      +  ++  +       +           +     N  ++ K  +   +  
Sbjct: 360 TTLKTIVPAVATGEDISTVTTAIQTWLNSGTGGGLTGATATVDANGKVQIKLGTNTASLA 419

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
           F DQ        +  + I+     N       S            +            ++
Sbjct: 420 FRDQASTTAGSTAGDVTIAYDADGNGTTDQTVSGFANFLGLNDMFVANRGQWMADSDVKA 479

Query: 250 NPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
                 + G +   +  +      I  L    +  +     +++    +     +E    
Sbjct: 480 QNWTPNVGGALTFYDSNNPPGGTAIGTLTIAPNETLKDIALKINSDTALSAKLEAEVVQD 539

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQG--------------ISETICVNPQYRSNPSFLRD 353
                          +                        +S  + VN     + S +  
Sbjct: 540 GDGYRLRIKDRAGKDMVITQTAGVGTGLIEQLGLKDSKAGLSGQLRVNQSLLDDSSRISR 599

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-TNVTLLEYARNSIGWLE 412
           G  +           AG     N    SF     FD   G+     +  +YA  ++    
Sbjct: 600 GAVLFNSDTGQYYISAGDNTTANQLAKSFQTAVSFDAAGGVTTGARSFSDYAALTLSQNA 659

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S           + + +    +    VN+ EELS L+  EQ Y  S K+I     ML
Sbjct: 660 SEASAVATTVSYQSQLADTLQLKSAEISAVNMDEELSQLLVWEQMYRASAKVISAAADML 719

Query: 473 QTLLEGVK 480
             L   ++
Sbjct: 720 DVLNSIIR 727


>gi|302339108|ref|YP_003804314.1| flagellar hook-associated protein FlgK [Spirochaeta smaragdinae DSM
           11293]
 gi|301636293|gb|ADK81720.1| flagellar hook-associated protein FlgK [Spirochaeta smaragdinae DSM
           11293]
          Length = 627

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/468 (13%), Positives = 151/468 (32%), Gaps = 40/468 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44
           S        +      +Q  +++  NI NA  + Y R+    +                 
Sbjct: 3   SAFTGIEMGKRSVVAHAQGLSTVGHNITNAATEGYSRQRVEMSPYEPIYVPGLNREETAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V        + ++ ++ + + SS  G   +  S+  + E +  ++    S    +
Sbjct: 63  QMGQGVVTERISRAHDSILERRIVSQSSGKGYWDVRDSYILMAEQVY-NEPSELSVRGLM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            K  +S +  S +  ++     +I+  + ++   +     ++ IR   +++I++ +  + 
Sbjct: 122 DKFWESWQDLSLHPEDNASRLAIIERGDSLMDGIHRRYEGLKDIREMLEQDIQVTVDRVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              S++  +N  I    A   + +D LD+RD+L++K+++II IS   R+ ++  V  S G
Sbjct: 182 NITSDIADLNREIIKVKAMGDEPNDLLDRRDLLVRKLADIIDISVDDRDPDEFTV-HSGG 240

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +           +        N  +   V  +S +      G++ A++++RD  + 
Sbjct: 241 MHLVQGDVVTKIAADPDP------RNEGYSRVVWEASGEDFRPKNGRLAAMVELRDGDIR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICV 340
               +LD M    +   +E            G+        + N                
Sbjct: 295 KEIQELDTMTVNFVDMVNEVHRAGYGLNGKTGIDFFTEYPFVANANGNYDRNGDGAFDST 354

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                +  + L     V       +    G  ++     D+ +        +G       
Sbjct: 355 YIYRINGSNSLNPQEQVGISGTLRLSGSDGTVEIDYEPTDTVDDIVKRINASGSEVVARF 414

Query: 401 LEYARNSIGWLEKNRSDSHD-------LHMKSQVVFNHISESYSNTVG 441
               R  +       +   +       +    Q +            G
Sbjct: 415 DRLGR--LSLKGTPAAGIENPDFVIRGIEDSGQFLVG--YAGILEESG 458



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/342 (11%), Positives = 95/342 (27%), Gaps = 10/342 (2%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK----HDAHDFLDQRDVL 197
             +++K   + D      +  +         +N        ++     +A+   D+    
Sbjct: 290 DGDIRKEIQELDTMTVNFVDMVNEVHRAGYGLNGKTGIDFFTEYPFVANANGNYDRNGDG 349

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               + I  I+     N    V  S    L       +  +   + TV      I   G 
Sbjct: 350 AFDSTYIYRINGSNSLNPQEQVGISGTLRLSG-SDGTVEIDYEPTDTVDDIVKRINASGS 408

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
            V +     + +  +K                +++  + L+G     +            
Sbjct: 409 EVVARFD-RLGRLSLKGTPAAGIENPDFVIRGIEDSGQFLVGYAGILEESGPEGAYSWDG 467

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                               +     +      +          +       G P     
Sbjct: 468 ADGVLALRGGEDGAGYAVAPLSHPSGW----IEINRQVKAEPATIAAGLGENGRPAQPGD 523

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +     + D    + +  +  EY  +++  +      +       + +   +S+   
Sbjct: 524 GSAALAIAALRDRDVMVGSYRSFDEYFSSAVARVGLKGETAQRSLETEEAIMKDLSDRRE 583

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  GVNL EEL+ +IK +  Y  +++ I   D+ML  ++  +
Sbjct: 584 SIAGVNLDEELANMIKFQHGYAAASRFITAVDEMLDVIINRM 625


>gi|312792656|ref|YP_004025579.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179796|gb|ADQ39966.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 494

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/496 (10%), Positives = 128/496 (25%), Gaps = 20/496 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D   + +    + ++           +   +I      
Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNKQIDTTKSPSKINILAFPTLSPQATDQIILDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            S   +V          K D  + L   DV  +     + +    +   + +      + 
Sbjct: 181 DSNKKIVEIQYDNDGNGKIDKDEKLTGEDVYNKIKDPSMSVLDKYQKILNKIGDDMKSSI 240

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
            F           ++   V  +SN  F  ID    ++N    +      A          
Sbjct: 241 SFRIFDSQGGEHTLSLTFVKYDSNKWFWIIDSPRKNNNYTEYLDDNIEGANTNFIAFGRI 300

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            F ++   +   L G+ ++             L        + N              QY
Sbjct: 301 EFDSKGQVINVQLEGAQNQNSNKFTIKFKNNSLDEITFDTSIGNTDETLNIFKFDYIKQY 360

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             + S      S          N+     +I  Y +  N+      VA       L    
Sbjct: 361 SLDSSIRAKKVSGYAAGSLQGFNVDATGKIIGVYSNGLNQIIGQIAVATFANPAGLQRIG 420

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   ++    S   ++ +        I +       V+L +E + +I  ++ Y  + ++
Sbjct: 421 DNL--YINTPNSGDPEIGIPGTGSRGTIFQGTLEMSNVDLAKEFTDMIVTQRGYQANARV 478

Query: 465 IMFTDKMLQTLLEGVK 480
           I  +D++LQ L+   +
Sbjct: 479 ITASDELLQDLVNIKR 494


>gi|237796175|ref|YP_002863727.1| flagellar hook-associated protein FlgK [Clostridium botulinum Ba4
           str. 657]
 gi|229264184|gb|ACQ55217.1| flagellar hook-associated protein FlgK [Clostridium botulinum Ba4
           str. 657]
          Length = 622

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA+ + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+ E  S N         V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWEDLSLNPQTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271



 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 27/323 (8%)

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +      +    D   +     + I+     +   +       T  +     I       
Sbjct: 301 AGEYTVTYYVGGDTKTEDKKRTLTINIESEEDFKRLDECRVLWTDKDGNAVQIENNSGKL 360

Query: 243 YTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
               +    +  +G     + +    P G+++  + ++   +  ++ QL+++A+ L  S 
Sbjct: 361 ERDNNAIGILGNNGKSDFKNLKLFEPPSGELRGQMSVQ-QDIDKYEEQLNKLAKALAFSV 419

Query: 302 SEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
           +     + +      G        +  N   +  +  I +N   + +P  +   G     
Sbjct: 420 NAVHTQSLDPASPKDGALNFFINGENPNNEMEITAGNIALNKAIKEDPMKI-IAGVTPNS 478

Query: 361 FLWNVKNLAGYPDLINHYCDSFN-----------------------KNFIFDPVAGINTN 397
              + K       + + +                                 + +      
Sbjct: 479 GEGDGKRALAISQIKDVFMSIQGIEKGTDRKKFLEKFFNPNDEFEFNGTTLNTIGKDTNG 538

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
           +T+  Y  + IG L  + +++  +            ++  +  GV++ EE + L++    
Sbjct: 539 MTMNIYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHC 598

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y  + K+I   D++L  ++ G+K
Sbjct: 599 YQANAKIISTVDQLLDVVINGLK 621


>gi|168183196|ref|ZP_02617860.1| flagellar hook-associated protein FlgK [Clostridium botulinum Bf]
 gi|182673575|gb|EDT85536.1| flagellar hook-associated protein FlgK [Clostridium botulinum Bf]
          Length = 622

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA+ + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+ E  S N         V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWEDLSLNPQTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271



 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 99/283 (34%), Gaps = 30/283 (10%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----AVPKGKIKALLQIRDS 281
            L+     +    + NS  +  ++N I + G    S+  +      P G+++  + ++  
Sbjct: 341 VLWTDKDGNAVQIENNSGKLERDNNAIGVLGNNGKSDFKNLKLFEPPSGELRGQMSVQ-Q 399

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICV 340
            +  ++ QL+++A+ L  S +     + +      G        +  N   +  +  I +
Sbjct: 400 DIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALNFFINGENPNNEMEITAGNIAL 459

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN----------------- 383
           N   + +P  +   G        + K       + + +                      
Sbjct: 460 NKAIKEDPMKI-IAGVTPNSGEGDGKRALAISQIKDVFMSIQGIEKGTDRKKFLEKFFNP 518

Query: 384 ------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                      + +      +T+  Y  + IG L  + +++  +            ++  
Sbjct: 519 NDEFEFNGTTLNTIGKDTNGMTMNIYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARD 578

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  GV++ EE + L++    Y  + K+I   D++L  ++ G+K
Sbjct: 579 SVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 621


>gi|261219812|ref|ZP_05934093.1| FlgK [Brucella ceti B1/94]
 gi|261756172|ref|ZP_05999881.1| flagellar hook-associated protein [Brucella sp. F5/99]
 gi|265996847|ref|ZP_06109404.1| FlgK [Brucella ceti M490/95/1]
 gi|260918396|gb|EEX85049.1| FlgK [Brucella ceti B1/94]
 gi|261736156|gb|EEY24152.1| flagellar hook-associated protein [Brucella sp. F5/99]
 gi|262551144|gb|EEZ07305.1| FlgK [Brucella ceti M490/95/1]
          Length = 382

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 5/375 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR             V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGSYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D  D+LDQRD LL+++S  IGI+T++R +NDMV++  +G TLFET  R + FE+ 
Sbjct: 181 TRMGRDVSDYLDQRDALLKQLSGEIGITTMMRGDNDMVIFAENGVTLFETTARKVTFEQS 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T       + +DGV +S +        G++  LLQ+RD + P +Q QLDE+AR L+ 
Sbjct: 241 AVLTPGVAGKAVTVDGVPLSHDTFDQPFGTGRLSGLLQLRDQIAPQYQMQLDEIARGLVT 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC----VNPQYRSNPSFLRDGG 355
            F+E D    + +       +         L  GI+ TI            +   LRDGG
Sbjct: 301 VFAESDQTGSSPDQTGLFSWSGSPAIPGAGLSAGIAGTIEVSVPFIASEGGSALLLRDGG 360

Query: 356 SVSKKFLWNVKNLAG 370
           +    + +NV+  AG
Sbjct: 361 ANGANYKYNVQGAAG 375


>gi|148380698|ref|YP_001255239.1| flagellar hook-associated protein FlgK [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932743|ref|YP_001384982.1| flagellar hook-associated protein FlgK [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935679|ref|YP_001388452.1| flagellar hook-associated protein FlgK [Clostridium botulinum A
           str. Hall]
 gi|226950152|ref|YP_002805243.1| flagellar hook-associated protein FlgK [Clostridium botulinum A2
           str. Kyoto]
 gi|148290182|emb|CAL84301.1| flagellar hook-associated protein 1 [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928787|gb|ABS34287.1| flagellar hook-associated protein FlgK [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931593|gb|ABS37092.1| flagellar hook-associated protein FlgK [Clostridium botulinum A
           str. Hall]
 gi|226841472|gb|ACO84138.1| flagellar hook-associated protein FlgK [Clostridium botulinum A2
           str. Kyoto]
          Length = 622

 Score =  159 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA+ + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+ E  S N         V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWEDLSVNPQTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDKENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 99/283 (34%), Gaps = 30/283 (10%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----AVPKGKIKALLQIRDS 281
            L+     +    + NS  +  ++N I + G    S+  +      P G+++  + ++  
Sbjct: 341 VLWTDKDGNAVQIENNSGKLEKDNNAIGVLGNNSKSDFKNLKLFEPPSGELRGQMSVQ-Q 399

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICV 340
            +  ++ QL+++A+ L  S +     + +      G        +  N   +  +  I +
Sbjct: 400 DIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALNFFINGENPNNEMEITAGNIAL 459

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN----------------- 383
           N   + +P  +   G        + K       + + +                      
Sbjct: 460 NKAIKEDPMKI-IAGVTPNSGEGDGKRALAISQIKDVFMSIQGIEKGTDRKKFLEKFFNP 518

Query: 384 ------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                      + +      +T+  Y  + IG L  + +++  +            ++  
Sbjct: 519 NDEFEFNGTTLNTIGKDTNGMTMNIYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARD 578

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  GV++ EE + L++    Y  + K+I   D++L  ++ G+K
Sbjct: 579 SVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 621


>gi|118444348|ref|YP_877945.1| flagellar hook-associated protein 1 [Clostridium novyi NT]
 gi|118134804|gb|ABK61848.1| flagellar hook-associated protein 1 [Clostridium novyi NT]
          Length = 676

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/526 (11%), Positives = 148/526 (28%), Gaps = 58/526 (11%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L +  N  +               NI N++ K Y R+  +   +             
Sbjct: 1   MSGLFSTLNVGKRGLYAQQGALDVTSHNIANSNTKGYTRQRALMETTRPFGMPSMDNQVG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +   +       D  +   +S +GQ      + +  E +  ++  +   ++
Sbjct: 61  PGQIGTGVEISKIQRVRDTFMDYQVRRETSTLGQYEARDKYLSEIEGIF-NEPSDTGVSN 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I K  D+ +  +K+         +++ A  +    N +  ++ K++ +A + I+    +
Sbjct: 120 LIGKFFDAWQEVAKHPEGSNSRTVLVNQASALASELNHTHSQLVKVKENAQESIKQATFD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L  +  +N  I     S  + +D +D+RD+LL ++SE   +         + +   
Sbjct: 180 INNALDRVDKLNQQIMAVKVSGMEPNDLMDKRDLLLDELSEKFNVVVEQDKFGSINLKPK 239

Query: 223 DGTTLFETV-PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
              T+       +    + N        + +      +  N       G           
Sbjct: 240 YTKTVDGNSEVANPLLVRKNPNDEVMRFSYVKSIEKKMEKNTTKIDVTGAPGKYETTCKI 299

Query: 282 VVPIFQNQLDEMARVLIGSFSEKD-----------PIAGNSENVPGLFIADGIKDLDNKL 330
                 ++       L  + ++KD               +   +            +   
Sbjct: 300 TYLKNGDKDRPATFNLNITSNKKDIHEAREEIEEKIRRLDQSRIIWSTSNKNDDSKNGLA 359

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                  I  NP    + +     G   +  L     +    D      +   K   F  
Sbjct: 360 VDKNGGVIGKNPVNFEDLALFDLKGDEYRGELKGFMTVQQDVDDYIEQMNKLAKGIAFSV 419

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDS---HDLHMKSQVVFNHISESYSNTVGVN---- 443
               +   ++      +   ++   +D         K+   +  I        GVN    
Sbjct: 420 NTLHSGKSSIGTVGTPTNNGVDVENADYMPFFVNGEKADKNYKIIDGKKVLYDGVNDITG 479

Query: 444 ----------LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                     L  E    I      + +   I    +++  +++  
Sbjct: 480 SSKINALKEVLDSETE--IT-----SAN---ISVNRQIMDDVMQIK 515



 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 115/376 (30%), Gaps = 8/376 (2%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +Y KN  +D      ++                +KIR      I    SN          
Sbjct: 300 TYLKNGDKDRPATFNLNITSNKKDIHEAREEIEEKIRRLDQSRIIWSTSNKNDDSKNGLA 359

Query: 173 VNDA---IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           V+     I     +  D   F  + D    ++   + +   V +  + +   + G     
Sbjct: 360 VDKNGGVIGKNPVNFEDLALFDLKGDEYRGELKGFMTVQQDVDDYIEQMNKLAKGIAFSV 419

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK--IKALLQIRDSVVPIFQ 287
                         T T+    +     +     G    K    I     + D V  I  
Sbjct: 420 NTLHSGKSSIGTVGTPTNNGVDVENADYMPFFVNGEKADKNYKIIDGKKVLYDGVNDITG 479

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS- 346
           +      + ++ S +E      +        +      +++      ++      Q  + 
Sbjct: 480 SSKINALKEVLDSETEITSANISVNRQIMDDVMQIKTRINDDKFALAAKNTKDGEQDGAR 539

Query: 347 --NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               + LRD     +                 +   + +     D + G    + +  Y 
Sbjct: 540 ALAIAQLRDKLLKIQNITKRTTREEFIEQNGANKKLNKDITLGLDTITGDINGMKIDSYF 599

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           ++++  L     ++  +      +    S+   +  GV+L EE++ +++ + +Y  + K+
Sbjct: 600 KDTVDKLGVQEQEAQRIVKNQGALLKEFSQRRESISGVSLNEEMANIVQYQHAYQANAKI 659

Query: 465 IMFTDKMLQTLLEGVK 480
           I  TD++L  ++ G+K
Sbjct: 660 IATTDQLLDVVINGLK 675


>gi|114320063|ref|YP_741746.1| flagellar hook-associated protein FlgK [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226457|gb|ABI56256.1| flagellar hook-associated protein FlgK [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 695

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 132/377 (35%), Gaps = 15/377 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +    N   +    A +  A+   NI N + + + R+    +               V V
Sbjct: 1   MSGTMNTGISGLMAAQRALAATSHNISNVNTEGFSRQRVEQSSRLPTGSGAGFVGNGVQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T R        + +  ++S   +   +       + + AD   +   +  +     +L+
Sbjct: 61  DTVRRLADQNLIENVRNNTSEFERLDTMAELSGRVDNLLAD--ADAGLSPALQDFFAALD 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + +     + V+  A+ +   FNT  R   ++  + ++    ++S + +    +  
Sbjct: 119 DLANDPNATTAKQQVLSAADTLATRFNTLDRRTAELEREVNQATRQQVSTMNQLSESVAD 178

Query: 173 VNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I  +        +D LDQRD LL++++EI  +  + + +  + V    G  +    
Sbjct: 179 LNREIVREQNRVGQPPNDLLDQRDELLRRMAEIADVRVVAQTDGAVNVAVGTGQPVVNGT 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +    ++       E   +F++      N  S +  G +  L++ RD V+    ++L 
Sbjct: 239 TANRI--EIGPADGDPEQLDLFVETAGGRVNVTSNLTGGGLGGLMEFRDQVLNPVNDELG 296

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +  + + +  +    ++      AD       ++ +  +      P    +   +
Sbjct: 297 RIAVTVAETLNAQHNLGVQFDSGEPRPGADLFSVAPPRMTEVTNADPATRPAVGFDRERI 356

Query: 352 RDGGSVSKKFLWNVKNL 368
                 +    +   + 
Sbjct: 357 DQLTGQNYSLRYEGGDT 373



 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/428 (12%), Positives = 126/428 (29%), Gaps = 23/428 (5%)

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS----LESYSK 116
              D+VL+  +  +G+  +  +     +        +  P         +     E  + 
Sbjct: 282 EFRDQVLNPVNDELGRIAVTVAETLNAQHNLGVQFDSGEPRPGADLFSVAPPRMTEVTNA 341

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +         +  +++     +   E        + +             E     + 
Sbjct: 342 DPATRPAVGFDRERIDQLTGQNYSLRYEGGDTWRLVNVDDAAGTRRFDLDDLETDDDGNY 401

Query: 177 IKFKTAS----KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +            D      + D    + + +   S   R +    V  +      E V 
Sbjct: 402 LLRADGLAINLGPDPDGDFSRGDRFDIQPTRLGASSIETRLSRPNQVAAASALISGEGVD 461

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            D       +  ++        DG +            ++  +L   D+  P F+ ++ +
Sbjct: 462 GDGQSANTGTGQISPIQLTAADDGAIPLDETI------ELNFVLAGGDNDEPGFEAEVPD 515

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
               +   F   DP A + E      +        ++              Y   P    
Sbjct: 516 GQGGMAAVFLPYDPEALDVEVGATFSLGAEPDAGADEDGF---------DGYLGLPGLAG 566

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      +  ++ G    +    ++     + D       N T  E   + +G + 
Sbjct: 567 RFTLSGVPREGDTFSIGGNRSAVGDNGNALAMVGLEDLETLDGGNTTFQEAYSSLVGDVG 626

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N   +       + + N   E+     GVNL EE + +++ +Q+Y+ S ++I  ++++ 
Sbjct: 627 ANTLRAQSNRDAQETLLNQSIEAREAVSGVNLDEEAANMLRFQQAYSASAQVIAVSNELF 686

Query: 473 QTLLEGVK 480
           QTLL  V+
Sbjct: 687 QTLLGAVQ 694


>gi|34103021|gb|AAQ59384.1| flagellar hook-associated protein FlgK [Chromobacterium violaceum
           ATCC 12472]
          Length = 438

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 148/469 (31%), Gaps = 41/469 (8%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAH 70
             +  +NI N     Y R+  +             +   V V   R  + +  + +    
Sbjct: 1   MNTASQNIANQQTPGYSRQGVVLATQAPGAGDPLSAGYGVNVSNVRRFSDDYKNLLQWQA 60

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
           +S +G +   Q +    E +       +S +    +   +L + S +   + +   VI +
Sbjct: 61  ASNVGSRAAAQPYFTQLEKVMG--SKGSSLSDGFDQFFAALNAASLD--SNTMRDQVIRS 116

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
           A+ + Q FN     +    A   ++    ++ +    + L  +N+ +    A   +    
Sbjct: 117 ADALAQRFNNLDGVLTSQLAAISEQRNATLTQINSATANLAALNEKLMSAKAQGINTSGL 176

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
            D+RD  +  +S +I +  + + +    +   +G  L           +           
Sbjct: 177 EDERDRQVDALSSLIEVRVVAQPDGSKSISLKNGLPLVTGDSAATLSSEAQPDGSQQ--- 233

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
            + +               G++  L +     +   Q Q+  +A  L    +++     +
Sbjct: 234 -LKLAFGTEKYAMPGGDLGGQLGGLNRFETENLRPVQAQVRTLAGELATRVNDQLAKGYD 292

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
               PG  +                               L     +    L    + A 
Sbjct: 293 MNGQPGKPLFQYD---------------------AGAAHGLLQTTGILSAELGFSADPAK 331

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
             +  N       K   F        NVTL +     IG L  +   +      + V+  
Sbjct: 332 PGNNDNLREVLKVKQQAFPLAG--IGNVTLGDAYSQMIGHLAISSQQNSSSLDTANVIRA 389

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              +++ +T GV   EE   LI+ ++ Y  + K+I   +++ ++ L  +
Sbjct: 390 EAEKNWQSTSGVQRDEEAVSLIEYQKMYQANMKVIAVANQLFESTLAIL 438


>gi|255597140|ref|XP_002536705.1| Flagellar hook-associated protein, putative [Ricinus communis]
 gi|223518821|gb|EEF25678.1| Flagellar hook-associated protein, putative [Ricinus communis]
          Length = 439

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/472 (14%), Positives = 155/472 (32%), Gaps = 42/472 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------ISPENVT 51
           M++      A +    A     ++ +N+ N     Y R+  +            +   V 
Sbjct: 1   MTIT---YNALSGALAAQAALNTVSQNLANVQTPGYTRQGVLLQATASDPGTLSAGNGVK 57

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           + +    +     + +   +S +G     Q + +  E + +DD    S ++ I     +L
Sbjct: 58  IGSLLRFSNTYQLQQMWRANSELGAHSQAQPYLSALEKVMSDDKS--SISYGIDNFFKAL 115

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            +   + +   L + VI   + + Q FN+            +++ +  + +L   L+ + 
Sbjct: 116 NAAGVDPTSGPLRQQVITTGDSMAQQFNSIYNVTSNQVISVNQQQQAILPSLNESLAGIA 175

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ++N  I     S  +    +D+R+ L+  ++  +G+  +   N  + V    G  L  + 
Sbjct: 176 LLNKQIVSVDKSGTNTSALMDKREQLIDSVASQVGVEVVYNPNGSVNVSLKSGEPLVMSD 235

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                     SYT  S S  + +    V+         G++  L   + + +   Q  + 
Sbjct: 236 SSS-----TVSYTTVSGSPVLQLSYANVTFALDDTKVGGQLGGLGDYKQNTLIPLQTSIK 290

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           E+A  +    +        +  V G  + +                              
Sbjct: 291 ELADQVAKKINSALAGGFTAPGVAGQPMFEDPPTTGIMQV-------------------- 330

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G  +    ++     G    + +  D   +      + G    V L +     +G L
Sbjct: 331 -VSGFTTADLAFSSDGTPGDSGNLQNLVDIKGQTVTLSSLGG--APVILGDADTQLVGKL 387

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             +   +  L   +  V +   + + +T  VN  EE   LI+ +  Y  + K
Sbjct: 388 GIDSQQNQSLLATATTVRSQSEDDWKSTSAVNSDEEGINLIEFQSMYQANMK 439


>gi|227876747|ref|ZP_03994856.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243]
 gi|306817694|ref|ZP_07451436.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239]
 gi|227842644|gb|EEJ52844.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243]
 gi|304649508|gb|EFM46791.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239]
          Length = 466

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/484 (10%), Positives = 118/484 (24%), Gaps = 24/484 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +  +           NI N +   +    T    +         +      
Sbjct: 1   MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFS-------QLVRSGA 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++         Q  L    +++    +     N           D      K     +
Sbjct: 54  APRLNERGGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQV 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +   Q        VQ  +AD    +          L     +      +  
Sbjct: 114 YTRNGSFGLDAQGQVVAADGSFVQGWKADTKGIVNASGQPGNITLPLTQSMKANPTTQVI 173

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +        D L    S     +         V+   D     +  P +I  +   +
Sbjct: 174 FGGNMPA-----DQLYNDPSMQNPNTAGNAKQFAQVLVVHD----DKGNPHEILMKFTRT 224

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                      + G   S+ +         + L         I  N+ D +         
Sbjct: 225 NIPAPAGGKPGLGGAPGSTWKVQFYDSKSYEQLKDANKEKALIQINKKDSVELSFDSQGQ 284

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET------ICVNPQYRSNPSFLRDGGS 356
             D      + +P       + D    + +           +     Y    +F  D   
Sbjct: 285 LSDADKEALKALPFEINEYKVNDDKTDVTKTKVANDEAKLNLSNLTGYAGLKNFAVDQVD 344

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +         +     +   + +  ++       A  +  + L +   +   ++E   S
Sbjct: 345 GNPAGTLTGFGVEADGTIRGTFSNGSSRALAKIATASFSNPLGLEKAGASY--FVESGNS 402

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          ++        V+L  E + LI  ++ +  + ++I  +D++LQ L+
Sbjct: 403 GQPQIGEPGSGTRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELV 462

Query: 477 EGVK 480
              +
Sbjct: 463 SMKR 466


>gi|187478191|ref|YP_786215.1| flagellar hook-associated protein FlgK [Bordetella avium 197N]
 gi|115422777|emb|CAJ49305.1| flagellar hook-associated protein 1 [Bordetella avium 197N]
          Length = 550

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/551 (15%), Positives = 171/551 (31%), Gaps = 80/551 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            ++N A    N +    +    NI NA    Y R+  +T+ +             V V T
Sbjct: 2   NLYNLALTGLNASQAGLSVTSHNINNAATDGYSRQRVVTSTAGASATSQGYFGRGVQVDT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            + +      K L   S +  Q             + AD       +  +S +  SL S 
Sbjct: 62  VKRQFDGFLYKQLVGASGSAAQLSTQLDQMTAVNNLFAD--RTVGVSAALSGMFSSLNSA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  + + +      +V   N + +++Q  R   + +I   ++ +  +L  +  +N
Sbjct: 120 ASAPADPAVRQDLTGKTNSLVAQINGAYQQLQNQRDGLNTQISTTVTQVNSYLERINDLN 179

Query: 175 DAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             I      S    +D +DQRD  L  ++E++G+    + ++   +    G T+      
Sbjct: 180 QQITIARGKSGQAPNDLMDQRDQALADLNELVGVRWYEQGDSI-NISLQSGQTVLAGRTI 238

Query: 234 DINFEKMNSYTVTSESNPIFI----DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                  ++   T  +    +     G      +   V  GK+  LL  R+S +   Q+Q
Sbjct: 239 YPLAAVNSAADPTRVALAYSMPDGNGGTQTIELKDEQVNGGKLGGLLSFRNSALDAVQDQ 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIA----------------------------- 320
           L ++A  L  +F+E++    +     G  +                              
Sbjct: 299 LGQLAIGLALAFNEQNAKGKDLSGQDGADVFALKAPSALPNAKNAGTGDISSRYVKASDI 358

Query: 321 --------------DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                +        T     +   +   ++  G  +    W  +
Sbjct: 359 KPGGYKIEFDAAANSYTVTRLSDNSNVAYTTDVNTGELMFDGVAIQMAGVPADGDTWQFQ 418

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL--------------- 411
                   ++      NK  + D   G +     LE+A+     +               
Sbjct: 419 PTRDAARDLSVVLSDPNKWALADAAGGTSNGQNGLEFAKLQTAKVLNNGTTSLGEQFSRL 478

Query: 412 ----EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                            +  +    + +YS+  GVN+ EE   L   ++ Y  S K++  
Sbjct: 479 VNNVGVQTQQVKTAKTAADNLVKQQATAYSSVSGVNMNEEYVSLAVYQEQYQASAKVLSV 538

Query: 468 TDKMLQTLLEG 478
              +  TLL  
Sbjct: 539 AGVLFDTLLGL 549


>gi|322807049|emb|CBZ04623.1| flagellar hook-associated protein FlgK [Clostridium botulinum
           H04402 065]
          Length = 630

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/384 (14%), Positives = 110/384 (28%), Gaps = 21/384 (5%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA+ + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGAINTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          G       F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGHFSSRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+    S N         V++ A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWHDLSLNAQGSNAKSVVMEQASALADELNHTFNELSKLKENTQGEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L ++  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 180 VNSILDQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFEGINLSTS 239

Query: 223 DGTTLFETVPRDINFEKM--NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           +    ++             +             D    S  +    P GK        +
Sbjct: 240 NHAKNYQDKTSPFGGTPPVVDGKDANLVQRVDPEDIYRFSYIKDIKSPAGKKPGQPGEYE 299

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
               +  +   E  +  I           N          +  K LD        +   V
Sbjct: 300 VTYYVGGDTKSESNKRTITVTIGNPKDPNNPTPEELKEAEEQFKRLDEGRVLWTDKNGDV 359

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWN 364
                ++ +      S+      +
Sbjct: 360 VKINDNSSADANANKSIGTIGSGS 383



 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/459 (11%), Positives = 135/459 (29%), Gaps = 43/459 (9%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + +   +S + Q   L       ++     +        +     +      +     
Sbjct: 173 IQQTVFEVNSILDQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFE 232

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                  N  +  Q+  +       +    D  +   +     +         +   K  
Sbjct: 233 GINLSTSNHAKNYQDKTSPFGGTPPVVDGKDANLVQRVDPEDIYRFSYIKDIKSPAGKKP 292

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD--------------GTTLF 228
            +   ++         +  S    I+  + N  D    T +              G  L+
Sbjct: 293 GQPGEYEVTYYVGGDTKSESNKRTITVTIGNPKDPNNPTPEELKEAEEQFKRLDEGRVLW 352

Query: 229 ETVPRDI---NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                D+   N               I        + +    P G+++  + +++  +  
Sbjct: 353 TDKNGDVVKINDNSSADANANKSIGTIGSGSCDFKNLKLFEPPSGELRGQMSVQEE-IDD 411

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
           +Q QL+++A+ L  S +     + +      G           N   +  +E I +NP  
Sbjct: 412 YQEQLNKLAKALAFSVNAVHTQSLDPANPKDGALNFFINGQNPNNEMEITAENIAINPDI 471

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI---------- 394
           + +P  +   G +      + K       + + +    + N   D    +          
Sbjct: 472 KKDPMKIIT-GVIPNSGEGDGKRALAISQIKDVFMSIQDINKNTDRETFLKEFFKQNDEF 530

Query: 395 -------------NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                           +T+  Y  + IG L  + +++  +      +     +S  +  G
Sbjct: 531 EFNGTKLNTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATLLKGFQQSRDSVSG 590

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V+L EE + L++    Y  + K+I   D++L  ++ G+K
Sbjct: 591 VSLDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 629


>gi|324325756|gb|ADY21016.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 432

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 149/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  ++       +  K  +   S +       S  +  E M      N S +  +    
Sbjct: 60  GVQTLSVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAE 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +                         +      ++ + +NP++ ++ 
Sbjct: 286 NLEELMSSVKNQVNTVM--------------------GKDFFVGDYAKELKLNPEFANDF 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDEDYKDG-------------------------LSYKKALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S+ +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VKVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|254519436|ref|ZP_05131492.1| flagellar hook-associated protein 1 [Clostridium sp. 7_2_43FAA]
 gi|226913185|gb|EEH98386.1| flagellar hook-associated protein 1 [Clostridium sp. 7_2_43FAA]
          Length = 611

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/611 (12%), Positives = 187/611 (30%), Gaps = 132/611 (21%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L + FN A+   N   +       NI N++   Y R+      S             
Sbjct: 1   MSGLFSTFNIAKRGMNVQQKSIDVTSHNIANSNTVGYSRQRAKIETSRPFGGTSMGSSVQ 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96
                    +        N  D  +   S+ +G+  +  +F    E +  +         
Sbjct: 61  AGQLGTGAQIRAIERVRDNFLDYQVRGESAVLGKYDIRNNFLYEVESVFNEPSETGISTL 120

Query: 97  ---------------NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                          N+S    +   + +  + + N +   L    ++  + +  +    
Sbjct: 121 MGKFFDSFQELSKQPNSSNARTVVAQQTAALTDALNATYTKLESLQVNAQDMLKSSVTEV 180

Query: 142 AREVQKIRADADKEIELEI--SNLRRFLSELTVVNDAIKFK------------------- 180
              ++++     + I + +  +     + +  ++ D + +K                   
Sbjct: 181 NSILEQLDRVNQEIISVTVSGNTPNDLMDKRDLLLDQLSYKFGIQVDKREFNGIDLKPTE 240

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGI---STIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           T S           +  + + S I  +   S+       +V Y  +G    E+  + +  
Sbjct: 241 TGSMKAPLLVNSSPNGDVARFSYITDVELDSSDFSGKTYIVTYYKNGNMDSESNRQTLKV 300

Query: 238 EKMNS-----------YTVTSESNPIFIDGVVVSSNQGSAVP--------KGKIKALLQI 278
             + +                       DG  + +    +           G +  L+ +
Sbjct: 301 TGITAEQAKEIKDNRIIWADKSGQAARGDGYPIKNGDVISYSELMMFKPENGNVNGLVSV 360

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---------- 328
           +   +  + NQL+++A+ +  S +       +  N       D +    N          
Sbjct: 361 Q-KDIEDYMNQLNKLAKSIAFSVNAIHSGIEDPLNNISGAEKDFMPFFVNKDVAKYKSNG 419

Query: 329 ----------KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                           ++ I VN +   +   ++           +  N+ G  D     
Sbjct: 420 ILSNLDETLVGEVGITAKNISVNKEILEDVMKIKTKTHDDLFPYTHENNMDGDSDGSRAL 479

Query: 379 CDSF----------------NKNFIFDPVAGINT-------------NVTLLEYARNSIG 409
             +                 ++  +FD   G N+              + +  Y +++I 
Sbjct: 480 AIAQLRDSLIRIQDINETVISRKDMFDKNKGGNSLINNGLKIENSTSGMKMDSYFKDTID 539

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            L     ++  +    + +   I ES ++  GV+L EE++ L++ + +YN + K+I   D
Sbjct: 540 RLGVQAQEAQRMVTNQEDLLYSIEESRASVSGVSLDEEMANLVQFQHAYNANAKIISTVD 599

Query: 470 KMLQTLLEGVK 480
           ++L+ ++ G+K
Sbjct: 600 ELLEVIINGLK 610


>gi|315654586|ref|ZP_07907492.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333]
 gi|315491050|gb|EFU80669.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333]
          Length = 487

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/496 (9%), Positives = 127/496 (25%), Gaps = 27/496 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61
           +L       +  +           NI N +   +    T    +    V        N+ 
Sbjct: 1   MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60

Query: 62  -----------MFDKVLHAHSSAIGQQRLLQSFEALKEMMS---ADDHYNNSPTHYISKL 107
                      +  + +  + +    Q   ++ + +               S        
Sbjct: 61  GGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGTSVYTRNGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
               +          +   + +    +  +       +   +    K  +  I       
Sbjct: 121 GVDAQGQLVAADGSFVQGWMGNEDGTINASGTPGHITLPLTKTVEGKPTKNVIYGGNIPA 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                  D I         +     QR  ++    +      ++               +
Sbjct: 181 -------DQIYMDPTKSKTSPSNAFQRSQIVHAYDDKGNPHDVLLTFARADFAKPGSQPV 233

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP--- 284
           +E    D    K  + T   E        + +   QG  V  G        +  V+    
Sbjct: 234 WELRAYDAKAYKELNETQREELTSKNGARIELKVKQGKTVKLGNSTVAPVAKGGVLTFQF 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
               +LD  +  L+ + +                IA       N   + I+  +     +
Sbjct: 294 GTNGKLDTESEQLLKTVNFTLDQLNVVPATKPGEIAKTEVVTPNVTKEPITLDLSAMTGF 353

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +F +     +        ++     +   + +  N+      VA     + L +  
Sbjct: 354 GGVNNFGQKQVDGNMAGYMTGYSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAG 413

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +   ++E   S    +          ++        V+L  E + LI  ++ +  ++++
Sbjct: 414 SSY--FVETGNSGQPQIGEAGTGQRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRV 471

Query: 465 IMFTDKMLQTLLEGVK 480
           I  +D++LQ L+   +
Sbjct: 472 ITTSDEILQELVNMKR 487


>gi|114565761|ref|YP_752915.1| flagellar hook-associated protein-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336696|gb|ABI67544.1| Flagellar hook-associated protein-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 838

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/428 (12%), Positives = 135/428 (31%), Gaps = 24/428 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS        +               NI NA+   + R+      +              
Sbjct: 1   MSNFFGLEIGKRSVLMHQTALNITGHNIANANTPGFARQAPSIVTTSPFHAPMLNNANRV 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V +   +       D  +   +   G  + +Q      E +  ++   +     
Sbjct: 61  GQLGTGVDIAQVKRIRDEFLDSQIRNETRVSGYWQSMQETLDRVEAIL-NEPSEDGLRGV 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    ++ +  S N   + +   V+     + + FN +  ++Q +R D + +I+++  ++
Sbjct: 120 MDMFWEAWQDLSLNPESESVRSVVVQRGMALAEAFNHTYSQLQDLRVDVNDQIKIKAHDV 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                ++  +N  I   + +    +D  D+RD+L++++SEI  +      N+ + V  +D
Sbjct: 180 NSIAQQIAALNRQIAAVSCAGKQPNDLKDKRDLLVEQLSEIAEVRIYNDKNDMVAVQLAD 239

Query: 224 GTTLFETVPRDINFEKMNS-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              +      ++  EK N          S +      G + +            +     
Sbjct: 240 RMLVQGVDYIELAEEKDNQGMYMLVWADSRTKARISGGQLGALLDARGQTNLPEENQPSE 299

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
              ++P     L+ +A+ ++ + +E      +  N               +         
Sbjct: 300 YKEIIPNMIEDLNMLAKTIMVNTNELHRGGYSLANKKSQVPDGSNFFKMPEYADTYENWA 359

Query: 339 CVNPQYRSNPSFLRDGGSVSKKF-LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                 R     ++   + S++       N   + D  N    +  K+ +  P   + T 
Sbjct: 360 KFMAVTREIQDDVKKIAAASRRTWDTEGGNKENFGDGGNALKIAQLKHSLNSPQFKVKTE 419

Query: 398 VTLLEYAR 405
              ++++ 
Sbjct: 420 GLNIDFSS 427



 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 88/317 (27%), Gaps = 11/317 (3%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              LS L   N                 D    L    S  I IS++   +  +      
Sbjct: 527 NAKLSLLQSYNQKPASSIFGDGRLQQPSDP--NLAINASIEITISSVNNFSGQVNYTYVS 584

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                +     +      +Y   +E +          S       +    A L++ D  +
Sbjct: 585 HEYDLDGNYNKVTGSFTLNYGGAAEQSITIGSLTTTISGLDGLSSEKSGVAELKVGDKGI 644

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                                  +  N        +      + N           V   
Sbjct: 645 LALTAAR--------EVAIPYQQVDINFNFNSDRKVLQSNCFVFNNGVLDPQAPDTVKTN 696

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS-FNKNFIFDPVAGINTNVTLLE 402
                +   +  S      ++         L+     +  +        + +  + T  +
Sbjct: 697 ELHFFTMNDNRNSNLFGRSYDGYIEITNGILVTAEPAAYLSYYEGDSGNSDMVEDATTDD 756

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           + R+          ++  +    +++ + +   + +  GV+L EE++ +IK + ++N ++
Sbjct: 757 FWRSITANTGVVSQEAQRMVKNQEILLSELQNKWESISGVSLDEEMTNMIKFQHAFNAAS 816

Query: 463 KLIMFTDKMLQTLLEGV 479
           + I   D+ L+ ++  +
Sbjct: 817 RFITGIDEGLEVIINRM 833


>gi|315657509|ref|ZP_07910391.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491981|gb|EFU81590.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 484

 Score =  157 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/493 (10%), Positives = 122/493 (24%), Gaps = 24/493 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +  +           NI N +   +    T    +         +      
Sbjct: 1   MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFS-------QLVRSGA 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++         Q  L    +++ +  +                 D      K     +
Sbjct: 54  APRLNERGGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGSSV 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +   Q        VQ    D D  I    +     L     V      K  
Sbjct: 114 YTRNGSFGLDAQGQVVAADGSFVQGWMGDKDGTINASGTPGNITLPLTKTVEGRPTTKVI 173

Query: 183 SKHDAHDFLDQRDVLLQKIS--------EIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
              +        D    K S        +I+       N +D+++  +            
Sbjct: 174 YGGNIPADQIYMDPTGSKTSPDNAFQRSQIVHAYDDKGNPHDVLLTFARNDFANPGSEPM 233

Query: 235 INFEKMNSYT----VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                 ++        ++   +  DG    + +        I            +   + 
Sbjct: 234 WELRAYDANVFKELDETQREKLTTDGGARIALEVEDGGSVSIGGSKVKPADGDGVLNFKF 293

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---LDNKLCQGISETICVNPQYRSN 347
                +   S      +    + V     A          N   Q I+  +     +   
Sbjct: 294 KTDGTLDEDSLKAMKTVKFKLDQVNVKETAVPKVSEILQPNVTKQPINLDLSALTGFGGV 353

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +F +     +        ++     +   + +  N+      VA     + L +   + 
Sbjct: 354 NNFGQKQVDGNMAGYMTGYSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSY 413

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             ++E   S    +          ++        V+L  E + LI  ++ +  ++++I  
Sbjct: 414 --FVETGNSGQPQIGEAGTGQRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITT 471

Query: 468 TDKMLQTLLEGVK 480
           +D++LQ L+   +
Sbjct: 472 SDEILQELVNMKR 484


>gi|183222558|ref|YP_001840554.1| flagellar hook-associated protein FlgK [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912593|ref|YP_001964148.1| flagellar hook-associated protein FlgK [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777269|gb|ABZ95570.1| Endoflagellar hook junction protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780980|gb|ABZ99278.1| Flagellar hook-associated protein 1 (HAP1) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 637

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/459 (13%), Positives = 145/459 (31%), Gaps = 32/459 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S        +   +   Q   +   NI NADNK+Y R+  +                   
Sbjct: 3   STFQGIEIGKRGLSVHQQAIQTTGHNISNADNKHYARQRVVMNSMDPIYDPAFNRAEVPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + V +        N  D  +   SS          +    E +  ++    +    +
Sbjct: 63  QIGQGVKISEIERVRDNFIDDRIIDSSSLKEYWGKKNDYLYQVETVF-NEPTGTTLRSMM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +   S E  S    E      V + AE +        R++  +R  +++EIE ++++L 
Sbjct: 122 DQFWSSWEDLSNYPEETAHRAVVQEKAEALGSRMEDVYRKLSLLRDQSNREIEAKVNHLN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +  +N+ I    A   + +D LD+RD LLQ+++ +  I+    ++++++V+    
Sbjct: 182 TVSENIKSLNEKITKSQALGDNPNDLLDRRDELLQELAGMADITIGRSDDDELMVFIGQQ 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +       I+          + +N   +D     +     + +G I+AL +IRD ++ 
Sbjct: 242 ILIQGQKVHKIDLV-------GNPNNDGLLDLKWSGTGDTVLLRQGSIQALYEIRDRILV 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N +D +A   +   +E             +   +      N         I  +   
Sbjct: 295 EKINAVDALAINAMDVINEIHKDGFGLNGKTNVNFFEQRALATNTF-----GEIDTDGDG 349

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT--LLE 402
            ++ + +      +         ++G    +        +  +          V   +  
Sbjct: 350 LNDKTAVFRVTGRTSLDPDRPIGISGTMRFLKASPGGETEILVPYSKDDTLNAVIKRINR 409

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + ++  +   +            +    +    G
Sbjct: 410 SETGVVAYMSHDNQLALKSTTNPNDKKENFMIRHLEDSG 448



 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 116/384 (30%), Gaps = 22/384 (5%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE--- 169
               N + D L         + V     S + + +IR     E    +  L     +   
Sbjct: 253 DLVGNPNNDGLLDLKWSGTGDTVLLRQGSIQALYEIRDRILVEKINAVDALAINAMDVIN 312

Query: 170 ---------LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                        N     + A   +    +D     L   + +  ++     + D  + 
Sbjct: 313 EIHKDGFGLNGKTNVNFFEQRALATNTFGEIDTDGDGLNDKTAVFRVTGRTSLDPDRPIG 372

Query: 221 TSDGT-TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQI 278
            S     L  +   +       S   T  +    I+          +   +  +K+    
Sbjct: 373 ISGTMRFLKASPGGETEILVPYSKDDTLNAVIKRINRSETGVVAYMSHDNQLALKSTTNP 432

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG-----LFIADGIKDLDNKLCQG 333
            D         L++   +L+G          +                  +D+       
Sbjct: 433 NDKKENFMIRHLEDSGELLVGLTGILTASGVSGSFDYRKIGEINKFQANAQDITLTPMYH 492

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            S    ++   R+NP+ +  G         +  +  G  D  N    +     + +    
Sbjct: 493 PSSFFKMSEDVRNNPANIAAGRGKDVNGSGDYNSPNGQKDGSNALLIA---AALREKPVM 549

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            + + T  ++  + I  L     ++   +     +   +     + +GVNL EE++ +++
Sbjct: 550 FDYSKTTDDFYNSLISRLGTEAREAKQEYTTQNELMVELENMRQSVMGVNLDEEMANMVQ 609

Query: 454 VEQSYNISNKLIMFTDKMLQTLLE 477
            +QSYN S ++I   ++ML T++ 
Sbjct: 610 FQQSYNASARMISTLNEMLDTIIN 633


>gi|120554039|ref|YP_958390.1| flagellar hook-associated protein FlgK [Marinobacter aquaeolei VT8]
 gi|120323888|gb|ABM18203.1| flagellar hook-associated protein FlgK [Marinobacter aquaeolei VT8]
          Length = 688

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 123/371 (33%), Gaps = 16/371 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52
           +  +     +          +   NI NA+   Y R++                   V+V
Sbjct: 1   MAGLIGIGLSGVLGYQAALNTTANNITNANTPGYSRQEVQFETQEGRRTGAGTIGSGVSV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R        + L   S+  G+Q    +     + +   +  +      ++    +++
Sbjct: 61  ADIRRLADAYLSQQLREDSTLFGEQNAFNAELTRLDNLLGGE--DTGLNKALNNFFSAMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     + V+  A+++V  F    +E  + R     +++  + +    L  +  
Sbjct: 119 NAAEDPTSLPQRQLVLSEAQQLVNRFQGLNQEFIQQRESVKTQMQQGVKDANTLLKSIAE 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N AI      A   +  + +D+RD  L+++SE++ I       + + V  S+G +L   
Sbjct: 179 LNLAISESPGLAQGREPLELMDKRDEKLRQLSELVSIRVTEVEGSQVNVSLSNGLSLVTG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   + ++   T     +   G  +       +  GK+  L    +  +    ++L
Sbjct: 239 ANAAEFATRSSAKDPTRLEFTLTSGGRTL--LVDEQIQGGKLGGLRAFDEMALKPAFDEL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  +  + + +  I  + E   G      +  L  +  + +                
Sbjct: 297 GRLAIAISAAINHQHEIGMDLEGDLGGNFFSDVNSLAVQRSRVVPNGNNDRTTTGQLAVE 356

Query: 351 LRDGGSVSKKF 361
           + D   +    
Sbjct: 357 ITDSSQLPAGT 367



 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/377 (11%), Positives = 96/377 (25%), Gaps = 12/377 (3%)

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                 + S +   S  +            +    T + ++     +     +     L 
Sbjct: 323 GNFFSDVNSLAVQRSRVVPNGNNDRTTTGQLAVEITDSSQLPAGTWELQFSGDGRSYELI 382

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             +S  TV    +     S+ +   F  + +       +   I        +M +     
Sbjct: 383 DTISGDTVKQGRLPDPVQSEINMPGFNIRVEGGEFNAGDKYLIQPSRNAAENMKLNIRRE 442

Query: 225 TTLFETVPRDINFEKMNSYTVT-SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             L    P   + +  N  T T ++ N + +      +        G      Q  D  +
Sbjct: 443 EDLAFASPVRASSDDGNLGTGTINQGNMLNVRNPNTGALLDDFQNSG------QFADGPI 496

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
            I            + S +        + +  G    D                   + Q
Sbjct: 497 TITFTNDGAGTIEYVVSNNSGPLFTSANVDNDGDGTTDVYDPQKINQIFSTRPEDESSGQ 556

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
           YR     +    +    F  +        +       +       +       +    E 
Sbjct: 557 YRGFVFEITGEPADGDVFTIDFNRNGVSDNRNAELLAALGTKNTLN-----GGSQNFTEG 611

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  +      S         +    +    +  GVNL EE   LI+ + +YN S +
Sbjct: 612 YAGLVEDIGVKTRQSQLDKDAGATLLEQSTNQRESVSGVNLDEEAGKLIQYQAAYNASAQ 671

Query: 464 LIMFTDKMLQTLLEGVK 480
           ++     +  TLL+  +
Sbjct: 672 VMSVAQDLFNTLLQSFR 688


>gi|220913741|ref|YP_002489050.1| flagellar hook-associated protein FlgK [Arthrobacter
           chlorophenolicus A6]
 gi|219860619|gb|ACL40961.1| flagellar hook-associated protein FlgK [Arthrobacter
           chlorophenolicus A6]
          Length = 472

 Score =  157 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/492 (11%), Positives = 127/492 (25%), Gaps = 42/492 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47
           MS     N A      A Q      +NI NA  + Y R+    +                
Sbjct: 1   MSTFGGLNTAFLGLTAARQGINLAGQNIANAGTEGYTRQRIEQSPIGAPSASGLTAPGVR 60

Query: 48  --ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
             + V+V        +  D  + + ++  G   +  +     E     +   N  T  + 
Sbjct: 61  PGQGVSVDGISRLGNSFLDAGVRSTAAQAGFTSIRSTELQRIEETLQ-EPGENGITTALQ 119

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
               + +  S +  E      ++  A  +    +   R +         E     + +  
Sbjct: 120 DFWGAWQGVSNHPGESAPAAVLLQAATTLAGKVSAGYRAIDAQWTQVRSEAAANTATVND 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             +++   N  I+   A    A++ +D R+  ++ I+ + G +     +    V      
Sbjct: 180 AAAQVAGYNATIRSVLAGGGSANELIDARNSAIETIAALAGGTVRENADGTADVLIGGNA 239

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            +  +  R ++                 I G   +     +   G    L   R +    
Sbjct: 240 LVSGSSYRTLSL-----------GGQTTITGAGTAVQVEWSDRPGNPAGLDGGRIAGAVS 288

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
             +     A   I   +       +        +    +            +        
Sbjct: 289 LLSPAAGGAGGAIAEAAASYDSFASELAAKVNAVHRTGQSTTGAANLDFFASAPGGSPAM 348

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           S     RD   ++              D +                    +  +  +   
Sbjct: 349 SLRVVPRDAAGIATGAAVAGTLDGSVADSLAQL---------------GTSATSPDKAWA 393

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  +      +      S            +   V+L EE   L+  + +Y  + +++
Sbjct: 394 AVVTGIGVLSRSAQQHEQLSAAASVSARGHRDSGASVSLDEENISLLTNQHAYQAAARVM 453

Query: 466 MFTDKMLQTLLE 477
              D+ L  L+ 
Sbjct: 454 TAVDEALDVLIN 465


>gi|217959222|ref|YP_002337770.1| flagellar hook-associated protein FlgK [Bacillus cereus AH187]
 gi|217064765|gb|ACJ79015.1| putative flagellar hook-associated protein [Bacillus cereus AH187]
          Length = 432

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 149/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +       S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAD 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANQKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +                         +      ++ + +NP++ ++ 
Sbjct: 286 NLEELMSSVKNQVNTVM--------------------GKDFFVGDYAKELKLNPEFANDF 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K       +                             ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDEVYKDG-------------------------LSYKKALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S+ +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VKVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|312876506|ref|ZP_07736489.1| fagellar hook-basal body protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796717|gb|EFR13063.1| fagellar hook-basal body protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 494

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 54/497 (10%), Positives = 128/497 (25%), Gaps = 22/497 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D   + +    + ++           +   +I      
Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPENKQIDTTKSPSKINILAFPTLSPQATDQIILDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR---NNNDMVVYTSD 223
            S   +V          K D  + L   DV  +     + +    +   N     + +S 
Sbjct: 181 DSNKKIVEIQYDNDGNGKIDKDEKLTGEDVYNKIKDPSMSVLDKYQKILNKIGDDMKSSI 240

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              +F++   +           +++   I ID    S N    +      A         
Sbjct: 241 SFRIFDSQGGEHTLSLTFVKYDSNKWFWI-IDSPRKSDNYAKYLDDNIEGANTNFIAFGR 299

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             F ++   +   L G+ ++             L        + N              Q
Sbjct: 300 IEFDSKGQVINVQLEGAQNQNSNKFTIKFKNNSLDEITFDTSIGNTDETLNIFKFDYIKQ 359

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
           Y    S      S          N+     +I  Y +  N+      VA       L   
Sbjct: 360 YSLGSSIRTKKISGYAAGSLQGFNVDATGKIIGVYSNGLNQIIGQIAVATFANPAGLQRI 419

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   ++    S   ++ +        I +       V+L +E + +I  ++ Y  + +
Sbjct: 420 GDNL--YINTPNSGDPEIGIPGTGSRGTIFQGTLEMSNVDLAKEFTDMIVTQRGYQANAR 477

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I  +D++LQ L+   +
Sbjct: 478 VITASDELLQDLVNIKR 494


>gi|300716224|ref|YP_003741027.1| flagellar hook-filament junction protein 1 [Erwinia billingiae
           Eb661]
 gi|299062060|emb|CAX59176.1| Flagellar hook-filament junction protein 1 [Erwinia billingiae
           Eb661]
          Length = 550

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/551 (13%), Positives = 162/551 (29%), Gaps = 76/551 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N A +  N AS    +   NI N     Y R+ T+   +             V+V
Sbjct: 1   MSNLINTALSGINAASAALNTTSNNISNYSVAGYSRQTTVLAQAGSTLSGTNYYGNGVSV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +   E        L A S+         +  +  + M       N+ +  I     S++
Sbjct: 61  ASVNREYDAFITNQLRAASTQSSALTTQYNQLSNIDDMF--SSTTNTLSTNIQDFFSSIQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + V+  A  +V     S   ++ + +  +  +   +  +  +  ++  
Sbjct: 119 TLVSNADDASARQAVLGKASGLVNQLQVSDTYLRNLDSSLNTSVTSTVDQVNGYAKQIAN 178

Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           VN  I     +   +  +D LDQRD L+  ++ ++G++   ++     +   +G +L   
Sbjct: 179 VNQQIAKLKGSGDGNPPNDLLDQRDQLVSNLNNLVGVTVSQQDGGSYNISIGNGISLVTG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   +  +          +S     +        L    S +   +NQL
Sbjct: 239 DSYNTLAAVPSSSDPSRLTIASVNPTTGATSEIPEKLVTTGSLGGLLAFRSDLDNTRNQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIAD----------------------------- 321
            ++A  L  SF+ +     +S    G    +                             
Sbjct: 299 GQLAMALGSSFNTQHEAGYDSNGDAGEAFFNLGSPAVISNTKNTTTASVSAQWTDTSKVQ 358

Query: 322 -----GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                   D  N      S+   + P   ++ +          +   +         L+ 
Sbjct: 359 ASNYKVSYDGTNWSVTRNSDNASITPTMGTDTNGNSTLSFDGLQLTVSGSPAKNDSFLVK 418

Query: 377 HYCDSFNKNFIFDPVAG----------------------------INTNVTLLEYARNSI 408
              D      +                                  I  + TL +   + +
Sbjct: 419 PVADVVVNMGVNITDESKVAAAGADDGVSDNTNAQSLLDLQTKNVITGSKTLTQSYASMV 478

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    S+          V   ++    +  GVNL EE   L + +Q Y  + ++I   
Sbjct: 479 ADIGNKTSNLETTSTTQTNVVTQLTNQQQSISGVNLDEEYGNLTRYQQYYTANAQVIQTA 538

Query: 469 DKMLQTLLEGV 479
             +   L+  V
Sbjct: 539 STIFDALISAV 549


>gi|42780831|ref|NP_978078.1| flagellar hook-associated protein FlgK [Bacillus cereus ATCC 10987]
 gi|222095362|ref|YP_002529422.1| flagellar hook-associated protein flgk [Bacillus cereus Q1]
 gi|42736751|gb|AAS40686.1| flagellar hook-associated protein, putative [Bacillus cereus ATCC
           10987]
 gi|221239420|gb|ACM12130.1| flagellar hook-associated protein 1 [Bacillus cereus Q1]
          Length = 432

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 148/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +       S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLAD 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANQKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +                         +      ++ + +NP++ ++ 
Sbjct: 286 NLEELMGSVKNQVNTVM--------------------GKDFFVGDYAKELKLNPEFANDF 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDEDYKDG-------------------------LSYKKALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S+ +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VKVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|302872562|ref|YP_003841198.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575421|gb|ADL43212.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 489

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/495 (9%), Positives = 123/495 (24%), Gaps = 23/495 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D     +    + ++           +   +IS     
Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            ++L   +  I       +   D         +         T           T +   
Sbjct: 181 SADLKAYSGQIDKYEDLLNVPADSKYS--TSFKIYDSQGKEHTFQLTFVKTGDNTWNWYV 238

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
               + +++   +            +  +           +  G+      + D      
Sbjct: 239 DAPRIKKNVGTAQNPDEKYVYVDEMLDANNDYDKFIATGTITFGQAG--KVLDDENTSDK 296

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              L      +I +      I   ++ V  +       + D      I+  +    Q+ +
Sbjct: 297 VEGLSVTGGRIINTTDGTFTIKFKNDVVNPITFKVNSAEFDVNDNTNIAFFLKNITQFGN 356

Query: 347 NPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
             S +R    +          N+     +   Y +  N+      VA       L     
Sbjct: 357 MESSIRVAQMTGYAAGNLQGFNVDASGKITGVYSNGLNQLIGQIAVATFANPAGLQRIGD 416

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   ++    S   ++          IS+       V+L +E + +I  ++ Y  + ++I
Sbjct: 417 NL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVI 474

Query: 466 MFTDKMLQTLLEGVK 480
             +D++LQ L+   +
Sbjct: 475 TASDELLQDLVNIKR 489


>gi|317052131|ref|YP_004113247.1| flagellar hook-associated protein FlgK [Desulfurispirillum indicum
           S5]
 gi|316947215|gb|ADU66691.1| flagellar hook-associated protein FlgK [Desulfurispirillum indicum
           S5]
          Length = 569

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 76/572 (13%), Positives = 175/572 (30%), Gaps = 98/572 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M      N   +    +     ++  N+ N + + + R+  +   +           + V
Sbjct: 1   MGTFQSLNVGLSGVLASQSALMTVGHNLSNMNTEGFSRQRVVLQANQPLRIANLQYGQGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +  +     + L    +  GQ           EM+  ++       + +++  DS
Sbjct: 61  NLNQVQRVHDEYVQQSLRTAITKGGQYEANYMAYNEIEMLF-NETEGMGLGYSLTQFWDS 119

Query: 111 LESYSKNLSEDIL-----GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
               +   ++          TVI++A  ++     + +++  ++A     ++  ++++  
Sbjct: 120 WHDLANAPTDTSQEAASKRSTVIESANFLINTIQGTYQQLNDLQAQYTGRVDSMVNDVNS 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            L  L  +N  I   +A  + AHD LDQRD++L K++E I I   +       V+  DG 
Sbjct: 180 QLQSLATLNTQIAKTSAHGNPAHDLLDQRDMILNKLAEYIDIKVDIDPQGQATVFF-DGK 238

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           TL +         K    T    S  +F      +S   +    G+I A +++RD  +P 
Sbjct: 239 TLVDRDYAAKLINKR---TGEFSSELLFESTSGHTSKITNFSNNGQIGAYMEMRDKTIPG 295

Query: 286 FQNQLDEMARVLIGSFSEKDPIA-------------------GNSENVPGLFIADGIKDL 326
           +  +LD+++R +I   ++                            +     I +G   L
Sbjct: 296 YIEKLDDLSRTIIEEVNKVHANGMVTKPFGAVSSQYSVENSRTPLNDNTPFQIQNGSFQL 355

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                 G             +              +      +   +  N      N   
Sbjct: 356 KVFDPAGGELQTFEIRINEGDSLRQIAMKLDQADGVAEGGLFSASINADNQLEIRGNNGN 415

Query: 387 IFDPVAGINTNVT-----------------LLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
            F      +  +T                 +  Y       L  + S     +  + ++ 
Sbjct: 416 TFVLYNDTSNALTAIGLNTFFKGHDAKSIGVNSYVAEDTTRLATSFSGEPGDNRNANLIA 475

Query: 430 NHISESYSNTVG-----------------VNLQE-ELSFLIKVE---------------- 455
              +      +                  +N+   E + LI+ +                
Sbjct: 476 ELRNAKVMGGMTIGENYNHFVSKIGMDVRINIDSLETTQLIRFQIEVKRESISGVNENEE 535

Query: 456 --------QSYNISNKLIMFTDKMLQTLLEGV 479
                   +S+  S++ I   D++L  ++  +
Sbjct: 536 LTNMLKFQRSFEASSRFITTIDRLLDNIVNRM 567


>gi|42524754|ref|NP_970134.1| hypothetical protein Bd3395 [Bdellovibrio bacteriovorus HD100]
 gi|39576964|emb|CAE78193.1| flgE [Bdellovibrio bacteriovorus HD100]
          Length = 427

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/485 (10%), Positives = 114/485 (23%), Gaps = 63/485 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQR 56
           M +L+      +      +    I  NI NA+   +                 +    Q 
Sbjct: 1   MGILSSLYTGVSGMTAQGEALGVIGDNIANANTIGFKASRAEFQDIISKNLKGIVGGNQI 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                +           I     +       +        +              E Y  
Sbjct: 61  GRGVKIGAVNPILSQGNIDATEKVTDLAISGDGYFKVKGSDGESYTRDGSFHFDREGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +     D    +V            I A A KE++L+++               
Sbjct: 121 TNDNQRVQGFSTDEKGNIVNKMTDIKFPRALIPAKATKELKLDLNLD------------- 167

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                                    S +         +     + S G  ++++      
Sbjct: 168 -------------------------SRMEPTKKFDPADPYSTSHYSTGVEMYDSQGNKHL 202

Query: 237 FEKMNSYTVTSESN-PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +     E      +DG  ++  +   + +     L+   D  +            
Sbjct: 203 VSFFFNKVNDREWEFKGLVDGKEITGGEEGKMSEVAAGKLMFTVDGKLDS---------- 252

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                   ++  + N     G      +K       +   + +    QY  N   +    
Sbjct: 253 --------QETTSTNFNFKGGALQDQQVKLNFGDAIKDGGKGLDGTKQYGKNSDLISWHQ 304

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        +      L   Y +    +     +A       L +   N +   E   
Sbjct: 305 DGAAAGTITGLSFNDEGTLTAVYSNGQANDLAQIALAKFENPEALFKVGNNRL--KESRD 362

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +          +         V+L  E   +I+ ++ +  + K I  TD++L  +
Sbjct: 363 SGTASVGAPGAAGRGKLFAKSLERSTVDLATEFVNMIQNQRGFQANAKTITTTDELLNEV 422

Query: 476 LEGVK 480
           ++  +
Sbjct: 423 IQLKR 427


>gi|302338085|ref|YP_003803291.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635270|gb|ADK80697.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 460

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/488 (9%), Positives = 112/488 (22%), Gaps = 43/488 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK----- 60
                 +   N   +   I  NI N +   + +                 R  ++     
Sbjct: 3   SLYAGVSGLQNHQTRMDVIGNNISNVNTVGFKKGRVNFQDLLSQTMSGAARPTDEVGGVN 62

Query: 61  --------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   N+          ++    ++       +    +   +               
Sbjct: 63  PKQVGLGMNVASIDTVHTQGSLQTTGIMTDIAIQGDGFFIERSGDKEFYTRAGAFGLDEN 122

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N S   L        +   + F  +A +V+ +      +     +        L  
Sbjct: 123 GTLVNPSN-GLRVQGWMAQDVDGRTFINTATDVEDLVIPVGSKDPARATGEVDLACNLDK 181

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
               I                 DV     S    I       + + +  +          
Sbjct: 182 RTPLIPAGAGDA----------DVAEGTWSIDKTIYDSFGEEHVLRINFTRVAGTENQWQ 231

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             +  +        + +N +   G   +      V    +  L    D        Q D 
Sbjct: 232 GSVTVDP----DAEAPTNTLVDIGEANNDTNTFVVEFDNLGTLQAAVDG-------QGDR 280

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +    +      D      E    +     +   D          +    Q+    S   
Sbjct: 281 IDNGTLQVNVAFDVAGATPEAGAPVRQDMVLNLGDVGSV------VDTITQFAEKSSTKA 334

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                          +     +   Y +  N+      +A       L +   +   ++ 
Sbjct: 335 FKQDGYGMGYLESFKIDQSGVITGVYSNGANRTLGQVALASFTNPGGLEKAGES--TFVV 392

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N S    +          +         V+L E+ + +I  ++ +  +++ I  +D+ML
Sbjct: 393 SNNSGEARIGESGVAGKGKLIAGALEMSNVDLAEQFTDMIVTQRGFQANSRTITTSDQML 452

Query: 473 QTLLEGVK 480
           Q LL   +
Sbjct: 453 QELLTLKR 460


>gi|283784870|ref|YP_003364735.1| flagellar hook-associated protein 1 [Citrobacter rodentium ICC168]
 gi|282948324|emb|CBG87909.1| flagellar hook-associated protein 1 [Citrobacter rodentium ICC168]
          Length = 546

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 147/547 (26%), Gaps = 73/547 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++FN A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLFNNAMSGLNAAQAALVTASNNINSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD     S +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTQYEQMSKIDNLLAD--KTLSVSASMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    +T+I  A  +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLISNAEDPAARQTLIGKANGLVNQFKTTDQYLRDQERQINTSIASSVQQINNYSQQIAN 178

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSDG 224
           +N+ I   T   +    +D LDQRD L+ ++++I+G+                      G
Sbjct: 179 LNEQISRLTGVGAGAAPNDLLDQRDQLVSELNKIVGVEVSIQDGGTYNITMANGYSLVQG 238

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFID----------------------------- 255
           +   +        +   +     +S    I+                             
Sbjct: 239 SNARQLAAVPSQADPSRTTVAYVDSQAGNIEIPEKLISTGSLGGLLTFRSHELDQTRNTL 298

Query: 256 ---------------GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN---------QLD 291
                               +     +    I     +++       +         ++ 
Sbjct: 299 GQLALAFADAFNNQHNAGFDAEGNPGMDFFNIGGPTVLKNGKNTGTADVDATVTDAAKVQ 358

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                ++   S+                  G    D       S     +       S  
Sbjct: 359 ATDYKMVFDGSKWQITRLADNTSFEATETGGKLSFDGLEVTVGSGAAANDSFTLKPVSGA 418

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V+      +          +   +      + +    +  + +  +     +  +
Sbjct: 419 IINMGVNVTNESQIAMAEDPTAGESDNRNGQVLLDLQNNGTTVGGSKSFNDAYATLVSTV 478

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               +           V   +++   +  GVNL EE   L + +Q Y  + +++   + +
Sbjct: 479 GSRTAALKTASKTQDNVVTQLTKEQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANSL 538

Query: 472 LQTLLEG 478
              LL  
Sbjct: 539 FDALLGI 545


>gi|154252985|ref|YP_001413809.1| flagellar hook-associated protein FlgK [Parvibaculum
           lavamentivorans DS-1]
 gi|154156935|gb|ABS64152.1| flagellar hook-associated protein FlgK [Parvibaculum
           lavamentivorans DS-1]
          Length = 613

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 153/446 (34%), Gaps = 18/446 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--- 57
           MSL +    A +  N          RNI N     Y R+      +      +  R    
Sbjct: 1   MSLSSALGAAMSGLNVTQAGIDVTSRNIANVGTAGYTRKVQQQVNALAGGEGIGVRREAA 60

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +      + L   S+      +  +     + M      N+S    IS L   L+  +
Sbjct: 61  QRQIDEFLQQQLRTASAGSAFANVKANMLGRVDSMFGTPDSNSSIAGAISGLATMLQELA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N   D   +++++ A  +    N  +  VQ++R +A++ I   + +    L  +  VN+
Sbjct: 121 GNPESDAARQSLLNEAGNLAAKLNNMSGTVQEMRLEAERNIAAAVESANALLGTIADVNN 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I  + A      D  D+RD+ + ++S ++ +  + R++  + ++TS G  L +  P ++
Sbjct: 181 QIAQRQAGNLSVGDLQDKRDMAIDELSRLMDVKVVNRDDGTVTIFTSGGQLLLDRTPVEL 240

Query: 236 NFEKMNSYTVTSE-------SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            F++      TS        +  +      +      A+  G I   + +RD ++P  Q 
Sbjct: 241 RFDERTQMDPTSTRENGGVGTISLISGSNSIDLLAAGAIRSGAIAGFVSLRDDILPKAQA 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---- 344
           QLDE+A  L  + SE+   +  + +            +       +S T+    Q     
Sbjct: 301 QLDELAAQLALALSEEQVASEAAVDGAATGFDIDTASMMAGNTISLSYTVGGVTQNVTIV 360

Query: 345 -RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLE 402
              +P+ L      + K    V  +     +     D          V+    +    L+
Sbjct: 361 RVDDPASLPLANDFTAKPNDIVVGIDFNQPMAGIIADLQAALPADVVVSNPGGDTIRFLD 420

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVV 428
                   +    +      +    +
Sbjct: 421 DGAAGNSDINSVSATVTPAGLSDGTM 446



 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 42/97 (43%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                        N ++  +AR  + +     +++       QVV + + + +    GVN
Sbjct: 517 APGTGIGGTSTPFNGSVDAFARRIVSFQSGQAANATRDAEAQQVVASSLQDRFDAQTGVN 576

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +E+S L+ ++ +Y+ + ++I    ++   LL   +
Sbjct: 577 IDDEMSNLLLLQNAYSANARVITTIKQLFDVLLSIGR 613


>gi|224825170|ref|ZP_03698276.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002]
 gi|224602841|gb|EEG09018.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002]
          Length = 598

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/445 (12%), Positives = 139/445 (31%), Gaps = 23/445 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
            ++F+   +  N A         NI N +   Y R+ T                + V + 
Sbjct: 3   TSIFSIGVSGLNAAQGALTVTSHNISNVNTAGYTRQVTQQAARYPQSASYGFIGQGVDLT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                  +   + + +  +          F    + + AD       +  +     SL++
Sbjct: 63  HVNRVYDDYLTQQVQSAQATDSYYSGQLDFLKQVDSLMAD--STVGVSPSLQDFFGSLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S + S     +T I+NA+ +   F T   ++Q++ +     I+  +  +    S++  +
Sbjct: 121 LSSDPSAIPSRQTAINNAQALATKFRTLDGQLQEMASGVSTRIKASVDTINGLASQIADL 180

Query: 174 NDAIKFKT------ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           N  I   T       +    +D LDQRD  + ++++ +  S + +++    V+  +G TL
Sbjct: 181 NQRISGLTVKTSGGTTLSAPNDLLDQRDQAILELNKQVKASVVPQSDGSYSVFIGNGQTL 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +    + +                  +    S +  G +  L   RD+ +   +
Sbjct: 241 VLGNQANQLATQPDPADPQQLQLVYQSTSGSNTVIPTSLIQGGALGGLFDFRDNTLTEAR 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            +L  +A     + + +  +  +    PG  +        +                 ++
Sbjct: 301 TRLGNLAIDFATAINYQQQLGLDLNGQPGQPLF----TDLSAYASDPRGAASALQVTMTD 356

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  L    ++           +G   +   Y             A    +VT       +
Sbjct: 357 PKGLATASNLKPGSPAVSPTGSGL-TISGVYSTLPGNYGWSSASAAGAPDVTAHPSYNLT 415

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHI 432
              ++     +  ++      +N +
Sbjct: 416 SLSIDSTTMTATVVNGAGTTTYNVV 440



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/426 (10%), Positives = 109/426 (25%), Gaps = 22/426 (5%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           G    +         ++       + +     L    ++  +   +         +    
Sbjct: 172 GLASQIADLNQRISGLTVKTSGGTTLSAPNDLLDQRDQAILELNKQVKASVVPQSDGSYS 231

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV-NDAIKFKTASKHDAHDFLDQ 193
           V   N     +         + +       + + + T   N  I              D 
Sbjct: 232 VFIGNGQTLVLGNQANQLATQPDPADPQQLQLVYQSTSGSNTVIPTSLIQGGALGGLFDF 291

Query: 194 RDVLLQK-------ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR------------D 234
           RD  L +       ++     +   +    + +    G  LF  +               
Sbjct: 292 RDNTLTEARTRLGNLAIDFATAINYQQQLGLDLNGQPGQPLFTDLSAYASDPRGAASALQ 351

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           +           S   P         S    +     +        +      +     +
Sbjct: 352 VTMTDPKGLATASNLKPGSPAVSPTGSGLTISGVYSTLPGNYGWSSASAAGAPDVTAHPS 411

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-SETICVNPQYRSNPSFLRD 353
             L     +   +     N  G    + +   + +    + S +  V+       S    
Sbjct: 412 YNLTSLSIDSTTMTATVVNGAGTTTYNVVPQPNVENGYKLVSGSPAVDAGIAFKLSGQLT 471

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLLEYARNSIGWLE 412
            G             AG    +        +  + D  A  +++  +   +  + + ++ 
Sbjct: 472 TGLTLSVVPNAAPIGAGDNANLLEMTKLQTRPLVDDDRADTSSSLTSFASHYASMVSYVG 531

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              ++          V     ++     GVNL EE + LIK +Q+Y  S+K+I    ++ 
Sbjct: 532 SVTNEVAVTSTAQTNVLQEAQKARDAISGVNLDEEAANLIKYQQAYQASSKVIQIAQQLF 591

Query: 473 QTLLEG 478
            +LL+ 
Sbjct: 592 SSLLQI 597


>gi|228907371|ref|ZP_04071229.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL
           200]
 gi|228852232|gb|EEM97028.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL
           200]
          Length = 432

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 142/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V       +V  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVEYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +          +       +     D    +  +ET         + 
Sbjct: 286 NLEDLMSSMKNQVNTVMGKDFFVGDHAKDMKLNPEFQKDISKMKISAETANKLAAVTEDD 345

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                                                            ++  +     I
Sbjct: 346 YK---------------------------------------------EGLSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|289208120|ref|YP_003460186.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp.
           K90mix]
 gi|288943751|gb|ADC71450.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp.
           K90mix]
          Length = 640

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 126/364 (34%), Gaps = 18/364 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+        +      +   +   NI N+  + Y R+ T                + V
Sbjct: 1   MSVSG---IGTSALLAFQRAIGTTSNNIANSATEGYSRQRTELGNLSPQFLGGSYQGQGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   R  + +  +  L    S     +         + + ADD         +    D+
Sbjct: 58  GVDAIRRISDDFVNTQLRTSISGQSNAQAKADLAGRIDNLLADDAS--GLAPVLQGFFDA 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
               + + + +      +  AE + + F      +++ R   + +IE  +  + +    L
Sbjct: 116 ASDVANDPTSNAARTVFLTEAESLAERFKAIDGRLEEQRRIVNGQIETNVKEINQLAESL 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I  K+      +D LDQRD +L +++E + ++T+ +++  + V+  +G  L   
Sbjct: 176 AGLNREIVAKSTQG-TPNDLLDQRDRVLNQLAEKVDLTTVEQDDGALNVFIGNGQALVLG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      S         I     V  +N    +  G++  LL++RDSV+   QN L
Sbjct: 235 GTSQSLVADSFSGDPGKLEVGIQSGSGV--ANITRFLQGGELGGLLEMRDSVIDTAQNTL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A  L  + ++++    +++   G  I               +  +        +   
Sbjct: 293 GQIAIQLGQASNDQNAQGLDADGQIGGDIFGIGSPAVWGRSSNSTGDVPEVSFGNVDELT 352

Query: 351 LRDG 354
             D 
Sbjct: 353 TSDY 356



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/426 (9%), Positives = 109/426 (25%), Gaps = 13/426 (3%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D  L+          L  + ++L     + D               ++  + +      L
Sbjct: 218 DGALNVFIGNGQALVLGGTSQSLVADSFSGDPGKLEVGIQSGSGVANITRFLQGGELGGL 277

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            +      +         A ++ +   D + +       +   +  +       +   ++
Sbjct: 278 LEMRDSVIDTAQNTLGQIAIQLGQASNDQNAQGLDADGQIGGDIFGIGSPAVWGRSSNST 337

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                      D L      +     +  + +  +V  S+   + E  P D +  + +  
Sbjct: 338 GDVPEVSFGNVDELTTSDYRLR----VTDDGDFQLVRLSNNQVVAELDPDDGDTLEADGL 393

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
            V          G            +     L             Q          +  E
Sbjct: 394 VVDISELDDAEAGDNWLIQPTRNGARDLDVVLDDPSGIAAAGASLQASAADGNGGDATIE 453

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG----SVSK 359
              + G++ +   L     +  +++             P     P+ +   G        
Sbjct: 454 GIQVTGDAFDPAVLDDPITVTVVEDGGDLFYEVNGEQFPVNDDGPTVIELDGWELTLQGT 513

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-----TLLEYARNSIGWLEKN 414
               +   +    D      +      + +       N         +   + I  +   
Sbjct: 514 PEEGDEFVVELDRDRPGDNRNMLEMADLSEARTIETDNGDRRVPGFGDAYNSLIANVGTR 573

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              ++     +            +  GVNL EE + LI+ +Q+Y  + ++I  ++ +  +
Sbjct: 574 TRQANVALDSANAQLEQAKAQRESISGVNLDEEAADLIRYQQAYQAAAQVIQVSNSLFDS 633

Query: 475 LLEGVK 480
           LL   +
Sbjct: 634 LLGAFR 639


>gi|228984822|ref|ZP_04144994.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775020|gb|EEM23414.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 432

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/492 (12%), Positives = 144/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASHGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M+     N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMAGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKGLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGDYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I E      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGIASDKSAVNAYQKIHGDLLEGIQEEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|218896670|ref|YP_002445081.1| flagellar hook-associated protein FlgK [Bacillus cereus G9842]
 gi|228900319|ref|ZP_04064549.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL
           4222]
 gi|218546008|gb|ACK98402.1| flagellar hook-associated protein FlgK [Bacillus cereus G9842]
 gi|228859354|gb|EEN03784.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis IBL
           4222]
          Length = 432

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 144/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +N +      +  E +P+ ++      N  S   K  I        + +  ++ 
Sbjct: 236 -----TVNGQDTYPLQLNKEKDPMSVEIYGSEINVTSGAIKSAID-----TKAKIVDYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +                   G    D KL     + I          
Sbjct: 286 NLEDLMSSVKNQVNTVMG----------KDFFVGDHAKDMKLNPEFQKDISKMKISAETA 335

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + L        K                                      +        I
Sbjct: 336 NKLAAITDGDYKEGL-----------------------------------SYKAALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNAYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|298345998|ref|YP_003718685.1| flagellar basal body and hook protein [Mobiluncus curtisii ATCC
           43063]
 gi|304390244|ref|ZP_07372198.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298236059|gb|ADI67191.1| flagellar basal body and hook protein [Mobiluncus curtisii ATCC
           43063]
 gi|304326726|gb|EFL93970.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 484

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/493 (10%), Positives = 121/493 (24%), Gaps = 24/493 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +  +           NI N +   +    T    +         +      
Sbjct: 1   MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFS-------QLVRSGA 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++         Q  L    +++ +  +                 D      K     +
Sbjct: 54  APRLNERGGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGSSV 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN-------- 174
             +      +   Q        VQ    D D  I    +     L     V         
Sbjct: 114 YTRNGSFGLDAQGQVVAADGSFVQGWMGDKDGTINASGTPGNITLPLTKTVEGRPTTKVI 173

Query: 175 -------DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                  D I         + D   QR  ++    +      ++               +
Sbjct: 174 YGGNIPADQIYMDPTGSKTSPDNAFQRSQIVHAYDDKGNPHDVLLTFARNDFANPGSEPM 233

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
           +E    D N  K    T   +        + +    G +V  G  K      D V+    
Sbjct: 234 WELRAYDANVFKELDETQREKLTNDGGARIALEVEDGGSVSIGGSKVKPADGDGVLNFKF 293

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                +    + +                           N   Q I+  +     +   
Sbjct: 294 KTDGTLDEDSLKAMKTVKFKLDQVNVNETTTPKSSSILQPNVTKQPINLDLSALTGFGGV 353

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +F +     +        ++     +   + +  N+      VA     + L +   + 
Sbjct: 354 NNFGQKQVDGNMAGYMTGYSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSY 413

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             ++E   S    +          ++        V+L  E + LI  ++ +  ++++I  
Sbjct: 414 --FVETGNSGQPQIGEAGTGQRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITT 471

Query: 468 TDKMLQTLLEGVK 480
           +D++LQ L+   +
Sbjct: 472 SDEILQELVNMKR 484


>gi|228920449|ref|ZP_04083794.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839079|gb|EEM84375.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 432

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 151/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V       +V  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVDYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +                    I    +      ++ + +NP+++ + 
Sbjct: 286 NLEDLMSSVKNQVN--------------------IVMGKDFFVGDYAKDMKLNPEFQKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAAITDGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNAYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|213585978|ref|ZP_03367804.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 546

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D+  K  I      + T     +  
Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412


>gi|317047697|ref|YP_004115345.1| flagellar hook-associated protein FlgK [Pantoea sp. At-9b]
 gi|316949314|gb|ADU68789.1| flagellar hook-associated protein FlgK [Pantoea sp. At-9b]
          Length = 547

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/550 (14%), Positives = 174/550 (31%), Gaps = 77/550 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A    ++   NI N     Y R+ T+   +             VTV
Sbjct: 1   MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYTRQTTILGQANSTLSGNSYYGNGVTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L + S+    Q     +  +  +         S +  I     +++
Sbjct: 61  TGVQREYDEFITAQLRSASATYNAQN--TQYSQISNIDDLLSTSTTSLSTSIQDFFTNVQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    ++++ NA+ +V  F T+A+ +  ++   + +I   +  +  + S++  
Sbjct: 119 NVVSNADDPSARQSMLSNAQGLVNQFQTTAQYLTNMQTSVNTDITSSVDQINTYTSQIAN 178

Query: 173 VNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    T      +D LDQRD L+  +++I+G++   ++ +   + +   TTL    
Sbjct: 179 LNTQIAKLTTGDGTAPNDLLDQRDQLVSSLNDIVGVTVSQQDGSY--IVSMGSTTLVNGS 236

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S   +  +                 +  G +  LL  R   +   QNQL 
Sbjct: 237 KTTSLVAMPSSSDPSRITVGYVDKQAGNVEIAEKTLTTGSLGGLLAFRTQDLDTAQNQLG 296

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADG----------------------------- 322
           ++A     SF+       +S    G    +                              
Sbjct: 297 QLAAAFATSFNTIHKEGYDSNGDQGTDFFNIGSPEVLSNTKNTSSTTLSAEWTDTSALKA 356

Query: 323 -----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                  D  N      S+ + V     ++            +   +    A    L+  
Sbjct: 357 SNYTVSYDGTNWSVTRQSDNVSVTATQGTDADGNTTLSFDGLQLTVSGTPAAKDSFLVKP 416

Query: 378 YCDSFNKNFIFDPV----------------------------AGINTNVTLLEYARNSIG 409
             +      +                                  +N N TL E   + + 
Sbjct: 417 VQNVIGDMSVAITDESQIAAAGAVDGASDNTNAQKLLDLQDSKLVNGNATLAEAYASIVS 476

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    S         + V + +S+   +  GVNL EE + L K +Q Y  + +++    
Sbjct: 477 TVGNKTSTLETTSTTQESVVSQLSDRQQSISGVNLDEEYANLTKYQQYYTANAQVLQTAS 536

Query: 470 KMLQTLLEGV 479
            +   L++ +
Sbjct: 537 TIFNALIDSL 546


>gi|218235346|ref|YP_002366423.1| flagellar hook-associated protein FlgK [Bacillus cereus B4264]
 gi|229069290|ref|ZP_04202580.1| Flagellar hook-associated protein FlgK [Bacillus cereus F65185]
 gi|229078920|ref|ZP_04211472.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock4-2]
 gi|229178147|ref|ZP_04305518.1| Flagellar hook-associated protein FlgK [Bacillus cereus 172560W]
 gi|218163303|gb|ACK63295.1| putative flagellar hook-associated protein [Bacillus cereus B4264]
 gi|228605277|gb|EEK62727.1| Flagellar hook-associated protein FlgK [Bacillus cereus 172560W]
 gi|228704334|gb|EEL56768.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock4-2]
 gi|228713777|gb|EEL65662.1| Flagellar hook-associated protein FlgK [Bacillus cereus F65185]
          Length = 432

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 142/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V       +V  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVDYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +          +       +     D    +  +ET         + 
Sbjct: 286 NLEDLMSSMKNQVNTVMGKDFFVGDYAKEMKLNPEFQKDVSKMKMSAETANKLAAVTDDD 345

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                                                            ++  +     I
Sbjct: 346 YK---------------------------------------------EGLSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|228952118|ref|ZP_04114213.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807650|gb|EEM54174.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 432

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 144/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  +   +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                              
Sbjct: 286 NLNEFVNSLKKQVNNTMKKEF--------------------------------------- 306

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                 G  +KK   N   +     +      + N   I D   G    +T  +     +
Sbjct: 307 ----FVGEDAKKLELNPDFIKDISKMKISAETANNLAAITD--KGYKDGLTYKQALDQFL 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|228938852|ref|ZP_04101452.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971733|ref|ZP_04132354.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978342|ref|ZP_04138719.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           Bt407]
 gi|228781359|gb|EEM29560.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           Bt407]
 gi|228787823|gb|EEM35781.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820701|gb|EEM66726.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939352|gb|AEA15248.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 432

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 144/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +N +      +  E +P+ ++      N  S   K  I        + +  ++ 
Sbjct: 236 -----TVNGQDTYPLQLNKEKDPMSVEIYGSEINVTSGAIKSAID-----TKAKIVDYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +                   G    D KL     + I          
Sbjct: 286 NLEDLMSSMKNQVNTVMG----------KDFFVGDHAKDMKLNPEFQKDISKMKISAETA 335

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + L        K                                      +        I
Sbjct: 336 NKLAAITDGDYKEGL-----------------------------------SYKAALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|229109195|ref|ZP_04238794.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-15]
 gi|228674205|gb|EEL29450.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-15]
          Length = 432

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 142/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V       +V  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVEYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +          +       +     D    +  +ET         + 
Sbjct: 286 NLEDLMSSMKNQVNTVMGKDFFVGDYAKDMKLNPEFQKDVSKMKMSAETANKLAAVTDDD 345

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                                                            ++  +     I
Sbjct: 346 YK---------------------------------------------EGLSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|312135845|ref|YP_004003183.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis
           OL]
 gi|311775896|gb|ADQ05383.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis
           OL]
          Length = 489

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/495 (9%), Positives = 122/495 (24%), Gaps = 23/495 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVVKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASADMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRYTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D     +    + ++           +   +IS     
Sbjct: 121 FSLDRMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            ++L   +  I       +   D         +         T           T +   
Sbjct: 181 SADLKTYSGQITKYEDLLNVPADSKYS--TSFKIYDSQGKEHTFQLTFVKTGDNTWNWYV 238

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
               V +++   +            +  +    +      +  G+        D      
Sbjct: 239 DAPRVKKNVGTAQNPDEKYVYVDEMLDANNDYDNFIATGTIIFGQAG--KVFDDENTSDK 296

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              +      +I +      I   ++ V  +       + D       +  +    Q+ +
Sbjct: 297 VEGITITGGRIINTADGTFTIKFKNDVVNPITFKVNSAEFDVNDNTNFAFFLKNITQFGN 356

Query: 347 NPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
             S +R    +          N+     +   Y +  N+      VA       L     
Sbjct: 357 MESSIRVAQMTGYSAGNLQGFNVDASGKITGVYSNGLNQLIGQIAVATFANPAGLQRIGD 416

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   ++    S   ++          IS+       V+L +E + +I  ++ Y  + ++I
Sbjct: 417 NL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVI 474

Query: 466 MFTDKMLQTLLEGVK 480
             +D++LQ L+   +
Sbjct: 475 TSSDEILQELVNIKR 489


>gi|224534099|ref|ZP_03674682.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi
           CA-11.2a]
 gi|224512798|gb|EEF83166.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi
           CA-11.2a]
          Length = 388

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 120/352 (34%), Gaps = 24/352 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              N+L+ +A  +I   +E        +   G         L +   +  + 
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTN 347


>gi|229155309|ref|ZP_04283420.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 4342]
 gi|228628234|gb|EEK84950.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 4342]
          Length = 432

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 145/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R + 
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKGLDTAEAQTREDIEAHVNEFNRLVG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVEIYGSEIPLASGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMGSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGDYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I E      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGIASDKSAVNAYQKIHGDLLEGIQEEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|302382558|ref|YP_003818381.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193186|gb|ADL00758.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 478

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/489 (11%), Positives = 134/489 (27%), Gaps = 20/489 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVT 54
           MS+ +      +     S   A+I +NI N +   Y R     +            +   
Sbjct: 1   MSINSALLAGVSGLTANSAALAAISQNIANVNTVGYKRTAAEFSTVVNSQSQGAGYSAGG 60

Query: 55  QRSENKNMFDK--VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
             +  +N   +   L   +S+       Q F    E     D  +          R    
Sbjct: 61  VLANTRNYIAQGGQLQRTTSSTDLGIAGQGFFVTTEKAEGLDAGDARLFTRAGAFRVDNF 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-NLRRFLSELT 171
            Y KN +   L    ++   ++  + +   +             E      +   L    
Sbjct: 121 GYLKNTAGLYLQGWPVNAEGDIPTDPSDLGKLTSINVGSVGGTAEATTRAQVNANLKSSQ 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            V+  I   + +      +        +     I +           V      +  +T 
Sbjct: 181 AVSADIATYSTATKSMSTYNATTGTGFKPD-FQITVPVSDSKGGQRTVA----YSFLKTA 235

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +    +++    +   N       ++ S        G++                   
Sbjct: 236 NPNEWQTEVHVIPASDIDNGTTPSNGILKSGLVLFTQDGRLDVDAMKARETATPGSMLFA 295

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + +   I   +        +       +    +++       ++ +     QY S+    
Sbjct: 296 DPSVASITLGASDAAAGTAAAPKWKTSLGIDNQNV----SFDLTASAGGLTQYDSDSIVQ 351

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               + +     +   +     +   + +   +      +A   +  +L   + N   + 
Sbjct: 352 AVVTNGTAFGNLSNIEIDEEGYVTAIFDNGVTRRIAQVALATFTSADSLTPASGN--AYR 409

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S + +L          I  S      V+L  E + LI  +++Y+ S+K+I   D+M
Sbjct: 410 VSQGSGTFNLKTPGAGGAGLIGASQLEASTVDLSAEFTGLITTQRAYSASSKIITTADEM 469

Query: 472 LQTLLEGVK 480
           L  L+   +
Sbjct: 470 LAELISIKR 478


>gi|222530130|ref|YP_002574012.1| hypothetical protein Athe_2164 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456977|gb|ACM61239.1| protein of unknown function DUF1078 domain protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 488

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/497 (10%), Positives = 133/497 (26%), Gaps = 28/497 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D     +    + ++           +   +IS     
Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            ++  + +  I           D L+         S  I  S    +   +    +   T
Sbjct: 181 SADTKIYSGQITKFE-------DLLNVPADSKYSTSFKIFDSQGKEHTLQLTFIKTGDNT 233

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--KALLQIRDSVVP 284
               V      + + +     E+     D +  +++  + + +G I      ++ D    
Sbjct: 234 WEWFVDAPRVKKNIGTAQNPQEAYVYVDDMIEANNDYDNFIARGTITFGQAGKVLDDENT 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                +       I + +    I   +  V  + +       D      I+  +    Q+
Sbjct: 294 PDVEGIAITGGRFINTQNGTFTINFKNNVVNPVTLKVNSSQFDVNDATNIAFFLKNITQF 353

Query: 345 RSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            +  S +R    +          N+     +   Y +  N+      +A       L   
Sbjct: 354 GNMESSIRVAQMTGYSAGSLQGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRI 413

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   ++    S   ++          IS+       V+L +E + +I  ++ Y  + +
Sbjct: 414 GDNL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANAR 471

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I  +D++LQ L+   +
Sbjct: 472 VITASDELLQDLVNIKR 488


>gi|229144350|ref|ZP_04272756.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST24]
 gi|296502338|ref|YP_003664038.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis
           BMB171]
 gi|228639137|gb|EEK95561.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST24]
 gi|296323390|gb|ADH06318.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis
           BMB171]
          Length = 432

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 145/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYESAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  + + +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDILLSGGTILSAIDTK-TKITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                              
Sbjct: 286 NLNEFVNSLKKQVNNTMKKEL--------------------------------------- 306

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                 G  +KK   N   +     +      + N   I D   G    +T  +     +
Sbjct: 307 ----FVGEDAKKLELNPDFIKDISKMKISAETANNLAAITD--KGYKDGLTYKQALDQFL 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|229096224|ref|ZP_04227197.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-29]
 gi|229102337|ref|ZP_04233045.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-28]
 gi|229115179|ref|ZP_04244589.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-3]
 gi|228668319|gb|EEL23751.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock1-3]
 gi|228680984|gb|EEL35153.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-28]
 gi|228687184|gb|EEL41089.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-29]
          Length = 432

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 149/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 ++ +      +  E +P+ ++      +  S   K  I        + +  ++ 
Sbjct: 236 -----TVSGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAID-----TKAKIVEYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+ +   +    +                   G    D KL    ++ I          
Sbjct: 286 NLEGLMSSVKNQVNTVMG----------KDFFVGDYAKDMKLNPEFAKDISKMKISAETA 335

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + L                                     D   G++    L ++    I
Sbjct: 336 NKLAAITDG-------------------------------DYKEGLSNKQALDQF----I 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|323175686|gb|EFZ61280.1| flagellar hook-associated protein FlgK [Escherichia coli 1180]
          Length = 500

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/495 (11%), Positives = 138/495 (27%), Gaps = 64/495 (12%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V V   + E        L A  +            +  + M +     +S    + 
Sbjct: 7   VGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQ 64

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
               SL++   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  
Sbjct: 65  DFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINN 124

Query: 166 FLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
           +  ++  +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++
Sbjct: 125 YAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMAN 184

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G +L +           +S   +  +                 +  G +  +L  R   +
Sbjct: 185 GYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGALGGILTFRSQDL 244

Query: 284 PIFQNQLDEMARVLIGSFSEKDPI--------------------------------AGNS 311
              +N L ++A     +F+ +                                       
Sbjct: 245 DQTRNTLGQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNTGDVAIGATV 304

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
            +   +   D     DN   Q              + +       +   F         +
Sbjct: 305 TDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSF 364

Query: 372 P----------------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                                           +   +      +      +    +  + 
Sbjct: 365 TLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDA 424

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +    +           V   +S    +  GVNL EE   L + +Q Y  + +
Sbjct: 425 YASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQ 484

Query: 464 LIMFTDKMLQTLLEG 478
           ++   + +   L+  
Sbjct: 485 VLQTANAIFDALINI 499


>gi|206970814|ref|ZP_03231766.1| putative flagellar hook-associated protein [Bacillus cereus AH1134]
 gi|206734450|gb|EDZ51620.1| putative flagellar hook-associated protein [Bacillus cereus AH1134]
          Length = 432

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 150/492 (30%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGIL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V       +V  G IK+ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAK-IVDYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+++   +    +                         +      ++ + +NP+++ + 
Sbjct: 286 NLEDLMSSVKNQVNTVM--------------------GKDFFVGDYAKDMKLNPEFQKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKMSAETANKLAAVTDGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VRVASDKSAVNGYQKIHGDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|226939368|ref|YP_002794441.1| FlgK [Laribacter hongkongensis HLHK9]
 gi|226714294|gb|ACO73432.1| FlgK [Laribacter hongkongensis HLHK9]
          Length = 610

 Score =  154 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 144/436 (33%), Gaps = 19/436 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ N      N A     +  +N+ N +   Y R+    +           +   V V  
Sbjct: 2   SLLNIGVTGLNAARAALTTTSQNVSNVNTAGYHRKAVNQSALYYGPGQFGNTGNGVRVDD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +  DK +   +S+        ++    + +             +  L  S++S 
Sbjct: 62  IYRVYDSYLDKAVQTATSSSKYYDTQYAYLDQLDQI--ISSSTTGLAPRMQDLFTSIQSL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S + S     + +ID A  +V  F +     + +R   + EI   ++++     ++  +N
Sbjct: 120 SSDPSSIPARQAMIDKAAALVNTFKSVDIRHEDLRTGINTEIRSGVTSINGLAKQIATLN 179

Query: 175 DAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           D I        +   D LDQRD  L ++++ IG +++  ++  + V+  +G +L      
Sbjct: 180 DQIAKLWQGGSNPPNDLLDQRDQALTELNKYIGATSVPLDDGTINVFMGNGQSLVLGAQT 239

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +    +  +      G+       + +  G +   L++RD  +   Q QL  +
Sbjct: 240 FELEAIQSKADASELTVGYKGTGI---ELPKTLLTGGSLGGALEMRD-TLNKSQQQLGAI 295

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  L+ SF+ +     +    PG        +           +        ++P  L++
Sbjct: 296 AVSLVSSFNAQHQQGVDRNGNPGKEFFGLDFNFPEFNTAFNVASGQNPGAPVTHPVNLQN 355

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA--RNSIGWL 411
                 + +      A    +      +    +I+   A    +  +  Y+        L
Sbjct: 356 LTPEQTEVVNRFALRALSQKVTKPEEIAAASGYIYQAGATNTGDGKVSSYSGLAGMRADL 415

Query: 412 EKNRSDSHDLHMKSQV 427
                 +  + + S  
Sbjct: 416 ATALGTAPGITVTSDG 431



 Score = 90.5 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/372 (10%), Positives = 88/372 (23%), Gaps = 10/372 (2%)

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +      +       +           +         + K +          +S+     
Sbjct: 248 KADASELTVGYKGTGIELPKTLLTGGSLGGALEMRDTLNKSQQQLGAIAVSLVSSFNAQH 307

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +    N     +            + +      S     + +    N   +       +
Sbjct: 308 QQGVDRNGNPGKEFFG---LDFNFPEFNTAFNVASGQNPGAPVTHPVNLQNLTPEQTEVV 364

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                R ++ +      + + S  I+  G   +         GK+ +   +      +  
Sbjct: 365 NRFALRALSQKVTKPEEIAAASGYIYQAGATNTG-------DGKVSSYSGLAGMRADLAT 417

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                    +    +    +AG     P   I               S T          
Sbjct: 418 ALGTAPGITVTSDGAGNFTLAGAGLTTPPYSIIPAPGTTGGYKVVHTSPTGQQTDAGFEF 477

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                       +F   +          N       K    + V       TL       
Sbjct: 478 TMTGTPAAGDQFQFRQRLPTDPFTETGDNSNLTQLAKLQTAEVVDVGGGKTTLQGAYGQL 537

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +    ++   +      +      S  N  GVNL EE + L+K +Q+Y  S+K++  
Sbjct: 538 ATMVGSKTNEVKVMKDAQTAILKEAMVSRENVSGVNLDEEAANLLKYQQAYQASSKVVQI 597

Query: 468 TDKMLQTLLEGV 479
              +  ++L+ +
Sbjct: 598 AGSLFDSILQAI 609


>gi|328948264|ref|YP_004365601.1| flagellar hook-associated protein FlgK [Treponema succinifaciens
           DSM 2489]
 gi|328448588|gb|AEB14304.1| flagellar hook-associated protein FlgK [Treponema succinifaciens
           DSM 2489]
          Length = 623

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/419 (13%), Positives = 132/419 (31%), Gaps = 29/419 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TIS 46
            A     +      S Q  +   NI NAD + Y R+  +                     
Sbjct: 5   FAGIEIGKRSLMAHSTQIQTAGHNISNADTEGYSRQRVIVKSFEPIYRPDLERAMVPGQI 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
            +   V +       + +  +    +          + ++ E +  ++  + S    + K
Sbjct: 65  GQGCDVESINRIKDELLESRIVEQKNVESYWETRDKYYSMIESVY-NEPNDVSVRTNMDK 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                +  S     D     V+   + +  +     + ++ I    + +IE  +  +   
Sbjct: 124 FWQGWQELSTYPESDAARLAVVVRGQTLTNSIQQQYKSLRGIGDQINGDIEAVVKQVNDL 183

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             ++  VN  I        + +D +D+RD+L++K+S +I ++   ++ ++ +V+T     
Sbjct: 184 SRQIASVNGEIVRSKGLGDNPNDLMDRRDLLVEKLSSLINVTVTQKDPDEFMVHTDGQII 243

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +  ++ R I        TV    N  +   +   +   +    G + AL+++RD  +   
Sbjct: 244 VQGSLARQIE-------TVGQLDNNGYGKLMWSDTKVDAEFHGGTLGALVELRDKDIRTE 296

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICVNP 342
              L+ MA       ++    A    N  GL        ++N                  
Sbjct: 297 IQSLNTMALNFADLVNDVHRNAIGKNNTTGLDFFVQHDFVENVNGNYDRNGDGVEDTSYI 356

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +  + L+    +       +   +G  D+     D+          +       L 
Sbjct: 357 FRMTGTNVLKMQEQIGLFGTMTINGASGNIDVAYFSTDTVEDVINRINDSNGEVKAYLD 415



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 101/341 (29%), Gaps = 5/341 (1%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
              +  +    DK+I  EI +L         + + +      K++             + 
Sbjct: 279 GGTLGALVELRDKDIRTEIQSLNTMALNFADLVNDVHRNAIGKNNTTGLDFFVQHDFVEN 338

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
                        +   ++   GT + +   +   F  M     +   +  +     V  
Sbjct: 339 VNGNYDRNGDGVEDTSYIFRMTGTNVLKMQEQIGLFGTMTINGASGNIDVAYFSTDTVED 398

Query: 262 NQGSAVPKGKIKALLQIRDS--VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                            R+S  V+    ++  E    +I    +          +     
Sbjct: 399 VINRINDSNGEVKAYLDRNSCLVLKATSSKGMENPDFVIRHVEDSGMFLTGYSGILQGSG 458

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           AD   D +      +            NPS   +   + +  + +V              
Sbjct: 459 ADNAYDFNRANAVDVLAGAQFAVSPVLNPSAYIEVNGLIQNDVSSVAAAFKNSQGFAEPS 518

Query: 380 D---SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
           D   +     I +    I +  T  +Y  ++I  +      + +       +   + +  
Sbjct: 519 DGRAAVEMAAIRNTKIMIGSQRTFDDYFADTITNVGLKGEQAQNQLATQNKIMGDLRDLR 578

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            +  GVN+ EEL+ +IK +  YN++ K I   D++L TL+ 
Sbjct: 579 DSISGVNIDEELADIIKFQHGYNVAAKFISVQDELLDTLIN 619


>gi|229121290|ref|ZP_04250521.1| Flagellar hook-associated protein FlgK [Bacillus cereus 95/8201]
 gi|228662135|gb|EEL17744.1| Flagellar hook-associated protein FlgK [Bacillus cereus 95/8201]
          Length = 432

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTK-VKIASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|196045090|ref|ZP_03112323.1| putative flagellar hook-associated protein [Bacillus cereus
           03BB108]
 gi|228945341|ref|ZP_04107696.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|196024092|gb|EDX62766.1| putative flagellar hook-associated protein [Bacillus cereus
           03BB108]
 gi|228814313|gb|EEM60579.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 432

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHGDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|312621577|ref|YP_004023190.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202044|gb|ADQ45371.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 488

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/497 (10%), Positives = 132/497 (26%), Gaps = 28/497 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D     +    + ++           +   +IS     
Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            ++  + +  I           D L+         S  I  S    +   +    +   T
Sbjct: 181 SADTKIYSGQITKFE-------DLLNVPADSKYSTSFKIFDSQGKEHTLQLTFIKTGDNT 233

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--KALLQIRDSVVP 284
               V      + + +     E+     D +  +++  + + +G I      ++ D    
Sbjct: 234 WEWFVDAPRVKKNIGTAQNPQEAYVYVDDMIEANNDYDNFIARGTITFGQAGKVLDDENT 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                +       I +      I   +  V  + +       D      I+  +    Q+
Sbjct: 294 PDVEGIAITGGRFINTQDGTFTINFKNSVVNPVTLKVNSSQFDVNDATNIAFFLKNITQF 353

Query: 345 RSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            +  S +R    +          N+     +   Y +  N+      +A       L   
Sbjct: 354 GNMESSIRVAQMTGYSAGSLQGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRI 413

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   ++    S   ++          IS+       V+L +E + +I  ++ Y  + +
Sbjct: 414 GDNL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANAR 471

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I  +D++LQ L+   +
Sbjct: 472 VITASDELLQDLVNIKR 488


>gi|225620569|ref|YP_002721826.1| flagellar hook-associated protein FlgK [Brachyspira hyodysenteriae
           WA1]
 gi|225215388|gb|ACN84122.1| flagellar hook-associated protein FlgK [Brachyspira hyodysenteriae
           WA1]
          Length = 672

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 120/357 (33%), Gaps = 28/357 (7%)

Query: 1   MSLLAVFNK--AQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------- 43
           MS  + F     +    N          NI N   K Y R+  +                
Sbjct: 36  MSTSSFFGIELGKRSLQNFKTALEVTGHNINNVATKGYSRQRVVMRTFDKPLEQPSLNRA 95

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                  +   + T         D  +       G  +    +    E +  ++  N + 
Sbjct: 96  ERAGQIGQGAEITTVERIRDQFIDSKIMMELGTDGYWKTKSDYLKQLEAIY-NEPGNANL 154

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
            + +    DS +  + N +E      +++ A+ +  + N    ++  +R + +  +E ++
Sbjct: 155 RNDLDAFWDSWQEMAANPAERGTRMVLVERADRINNSINQMFNQMNGMRNNLNNLVENKV 214

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +    + +  +N  I  + A     +D LD+RD+L+ ++S +  +     + ++ ++Y
Sbjct: 215 KRINDISNSIRDLNVEIVKQQALGQSPNDLLDRRDLLVDELSSLANVDIKSVDPDETMIY 274

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                 +   V  +++ E+       + +N    D      +       G++KAL+++RD
Sbjct: 275 IGGRALIQGNVVSELSVER-------NINNEGMYDIYWKKDHVQVQFEGGELKALMELRD 327

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                  N LD  A  L  S +E            G+      K   + +       
Sbjct: 328 VDTVDAINDLDTFAMNLADSVNEIHRSGFGLNQETGIDFFTVTKTTPSVIGNFDINN 384



 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/336 (9%), Positives = 97/336 (28%), Gaps = 6/336 (1%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDA----IKFKTASKHDAHDFLDQRDVLLQKISEII 205
            D D        ++         +N          T +        D  +   +  + + 
Sbjct: 335 NDLDTFAMNLADSVNEIHRSGFGLNQETGIDFFTVTKTTPSVIGNFDINNDGQEDSTIMF 394

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
            +S I   ++   + +S             +     +  +        I+    + +   
Sbjct: 395 KVSGINSVDSTSSIGSSGTLVFGNKSREGADVAIDYTAQMKVGELIDKINSSEANVSAYL 454

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                 +       D + P +  +  E +   +   +     +G +       I    + 
Sbjct: 455 DDKNRLVLKARGFDDYMRPSYFIKHIEDSGDFLVGITGVLNQSGAAGAYNWQTIDQVNQL 514

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP--DLINHYCDSFN 383
             +     ++           N     D   ++     +          + I    ++  
Sbjct: 515 AGDFRNFTVTPDRHPASAIAVNDIIRNDINYIAASKGIDTTGNGFNDKWNGIGDGSNALA 574

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              +      +++  T  ++   S+  +      ++    K  VV  ++ +   +  GVN
Sbjct: 575 IANLKTKEIMVDSKSTFNDFYTGSLAKIASRTETANAETEKQTVVMEYLEKLRQSVSGVN 634

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +   +  YN S +++   D++L  ++  +
Sbjct: 635 LDEEVAQMAMYQHGYNASARVVSVMDQLLDVVINRM 670


>gi|30019783|ref|NP_831414.1| flagellar hook-associated protein FlgK [Bacillus cereus ATCC 14579]
 gi|229127064|ref|ZP_04256063.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-Cer4]
 gi|29895328|gb|AAP08615.1| Flagellar hook-associated protein 1 [Bacillus cereus ATCC 14579]
 gi|228656417|gb|EEL12256.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-Cer4]
          Length = 432

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYESAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  +   +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                   + +NP +  + 
Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     +                     D F                          
Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|116626183|ref|YP_828339.1| flagellar hook-associated protein FlgK [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229345|gb|ABJ88054.1| flagellar hook-associated protein FlgK [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 475

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/497 (14%), Positives = 171/497 (34%), Gaps = 40/497 (8%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVT 51
           MS LLA    + N      +   +   N+ NA    Y ++       P          V 
Sbjct: 1   MSNLLASLVSSANTLQAYGRVLEATQNNVSNASTPGYAKQSIELYALPFDPQGGATGGVR 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             T +S      ++ +   ++ +G Q+ L     + +        N      ++ L  S 
Sbjct: 61  AGTLQSARNEYAEQAVRNQTTGLGYQQQLADSLTVLQTNFDITG-NQGIPQALNSLLQSF 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            ++  +  +    +TV+  A+ + Q FN +A  V  +  D ++++   +  + + + +L 
Sbjct: 120 SAWGASPDDPSARQTVLQRADALAQAFNQTANSVSSVSRDTERQVGDTVGQINQLVGQLK 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             N           +      +    L+++S +  +  +  ++  + +     T L    
Sbjct: 180 GYNQ---LALQGNKNDAGLSARVHSALEQLSSLADVQAVFIDDGSVSLTIGGQTPLLIGD 236

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV--VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +      +        +NP+    +    S     +   G++ AL+++R+ V+P     
Sbjct: 237 QQYAISASLYVPAEPPATNPLGAGQMRLQASDGSDISNAGGQLGALVKLRNDVMPSLIGD 296

Query: 290 ------LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                 L+ MA+      ++       +   PG+ I     D    +   I     V P 
Sbjct: 297 RYQTGDLNLMAKQFADRVNQLLTGGSTTAGQPGVAIFQYNPDDPTSIASAIKVDTSVTPD 356

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             +  S                    G P + N    + +   +    A      +  ++
Sbjct: 357 QLAAVSI-------------------GPPTVSNGVPLALSALAVPTQDADRINGFSFSQF 397

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                G +    +D+ +     Q +     +      GV+L EE + L++ +++Y  + K
Sbjct: 398 YGQVAGTVGNLLNDAQNNTEVQQSLLTQAKDLRQQYQGVSLDEEATTLMQFQRAYQANAK 457

Query: 464 LIMFTDKMLQTLLEGVK 480
            +   D++ QT ++ +K
Sbjct: 458 YLSVLDELTQTAIDILK 474


>gi|153940778|ref|YP_001392018.1| flagellar hook-associated protein FlgK [Clostridium botulinum F
           str. Langeland]
 gi|152936674|gb|ABS42172.1| flagellar hook-associated protein FlgK [Clostridium botulinum F
           str. Langeland]
 gi|295320033|gb|ADG00411.1| flagellar hook-associated protein FlgK [Clostridium botulinum F
           str. 230613]
          Length = 621

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA  + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+    S           V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIKDKDGNYQDANL 271



 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 115/360 (31%), Gaps = 27/360 (7%)

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                DA+    ++  ++ RF     +   A K    +      +    D   +     +
Sbjct: 263 DGNYQDANLVQRIDPEDVYRFSYIKDIKPPAGKKPGEAGEYTVTYYVGGDTKTEDNKRTL 322

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQG 264
            I+     +   +       T  +     I        +  +    +  +G     + + 
Sbjct: 323 TINIGSEEDFKRLDECRVLWTDKDGNAVQIKDNSGKLESDNNAIGVLGDNGKSDFKNLKL 382

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGI 323
              P G+++  + ++   +  ++ QL+++A+ L  S +     + +      G       
Sbjct: 383 FEPPSGELRGQMSVQ-QDIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALDFFIN 441

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            +  N   +  +  I +N   + +P  +   G        + K       + + +     
Sbjct: 442 GENPNNEMEITAGNIALNKAIKEDPMKI-IAGVTPNSGEGDGKRALAIAQIKDVFMSIQG 500

Query: 384 KNFIFDPVAGI-----------------------NTNVTLLEYARNSIGWLEKNRSDSHD 420
            +   D    +                          +T+  Y  + IG L  + +++  
Sbjct: 501 IDKNTDRKTFLKKFFKPNDEFEFNGTTLSTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQR 560

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +            ++  +  GV++ EE + L++    Y  + K+I   D++L  ++ G+K
Sbjct: 561 MVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 620


>gi|229058370|ref|ZP_04196754.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH603]
 gi|228719879|gb|EEL71469.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH603]
          Length = 432

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 146/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T++    +     N  A+ +    A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGAL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I+A +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVAIYGSDIPLSGGAIQAAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   + G  +          +                        I +NP++  + 
Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|306820122|ref|ZP_07453770.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551900|gb|EFM39843.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 474

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/491 (10%), Positives = 133/491 (27%), Gaps = 30/491 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53
           ++   N A +   N   +   I  NI N +   +    T             S  +    
Sbjct: 1   MMRSMNSAVSSLKNHQARMDVIGNNIANVNTVAFKAARTTFKDTYSQLTRAASGSSGDRG 60

Query: 54  TQRSENKNMFDKVLHAHSS----AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                   +   +    ++     +    +        E     D  +            
Sbjct: 61  GINPGQIGLGMNLSSIDNAMDKGTVETTNINTDLYIDGEGFFMVDGPDGRFYTRDGNFGV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E Y  N + + +     D    ++        ++ KI+      ++ ++++    L  
Sbjct: 121 DEEGYLVNKNGNYVMGYQADKDGNII-------EKIDKIQVPIKDVLKPKVTS-NIQLEG 172

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                 A    +   +      D++ V     S+    +          +          
Sbjct: 173 NLSSKTAEGLPSPLPNTLATIYDKKPVDPADPSKGFTYTVKPE------LAEGSSPKRES 226

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            + + I    ++S          F+     + +  +        A++ +  S +      
Sbjct: 227 IIGKTITTSVIDSLGGEHTIQVDFVKEGPNTWSAYAFYKTPD-GAMVPVTGSTINTNPAT 285

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             +   +    F++K  +   +      F  D                +    QY S  +
Sbjct: 286 TADGKALTGFKFTDKGLVDPANAVKELTFTLDPSGINGAAPINNFKIGLSSLTQYESKST 345

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                    K       ++     +I  + +   K       A  +    L +   N   
Sbjct: 346 AFAKTNDGYKLGELTKMSIGSDGKVIGQFNNGDTKALGQIVTATFSNVNGLQKQGDNL-- 403

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W     S   +++         +         V+L +E + +I  ++ +  ++++I  TD
Sbjct: 404 WSPTENSGEANINKPGSGGNGALLSGALEMSNVDLAKEFTNMIVTQRGFQANSRVITTTD 463

Query: 470 KMLQTLLEGVK 480
           +ML+ L+   +
Sbjct: 464 QMLEELVNLKR 474


>gi|49477285|ref|YP_035858.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118477174|ref|YP_894325.1| flagellar hook-associated protein FlgK [Bacillus thuringiensis str.
           Al Hakam]
 gi|196033487|ref|ZP_03100899.1| putative flagellar hook-associated protein [Bacillus cereus W]
 gi|196038896|ref|ZP_03106203.1| putative flagellar hook-associated protein [Bacillus cereus
           NVH0597-99]
 gi|229090699|ref|ZP_04221932.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-42]
 gi|300117343|ref|ZP_07055133.1| flagellar hook-associated protein FlgK [Bacillus cereus SJ1]
 gi|49328841|gb|AAT59487.1| flagellar hook-associated protein 1 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118416399|gb|ABK84818.1| flagellar hook-associated protein 1 [Bacillus thuringiensis str. Al
           Hakam]
 gi|195993921|gb|EDX57877.1| putative flagellar hook-associated protein [Bacillus cereus W]
 gi|196030041|gb|EDX68641.1| putative flagellar hook-associated protein [Bacillus cereus
           NVH0597-99]
 gi|228692641|gb|EEL46367.1| Flagellar hook-associated protein FlgK [Bacillus cereus Rock3-42]
 gi|298725178|gb|EFI65830.1| flagellar hook-associated protein FlgK [Bacillus cereus SJ1]
          Length = 432

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|254723815|ref|ZP_05185601.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           A1055]
          Length = 432

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMKGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLRSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|170755438|ref|YP_001782346.1| flagellar hook-associated protein FlgK [Clostridium botulinum B1
           str. Okra]
 gi|169120650|gb|ACA44486.1| flagellar hook-associated protein FlgK [Clostridium botulinum B1
           str. Okra]
          Length = 621

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA+ + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+    S           V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   G+     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIQDKDGNYQDANL 271



 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/450 (10%), Positives = 131/450 (29%), Gaps = 34/450 (7%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS--- 119
             + +   +S + Q   L       ++     +        +     +      +     
Sbjct: 173 IQQTVFEVNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFE 232

Query: 120 ----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                         +            ++      DA+    ++  ++ RF     +   
Sbjct: 233 GIKLSTSNHAKNYQDKTSPFGGEPPQIQDKDGNYQDANLVQRIDPEDVYRFSYIKDIKPP 292

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           A K    +      +    D   +     + I+     +   +       T  +     I
Sbjct: 293 AGKKPGEAGEYTVTYYVGGDTKTEDNKRTLTINIGSEEDFKRLDECRVLWTDKDGNAVQI 352

Query: 236 NFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                   +  +    +  +G     + +    P G+++  + ++   +  ++ QL+++A
Sbjct: 353 KDNSGKLESDNNAIGVLGDNGKSDFKNLKLFEPPSGELRGQMSVQ-QDIDKYEEQLNKLA 411

Query: 295 RVLIGSFSEKDPIAGNS-ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           + L  S +     + +      G        +  N   +  +  I +N   + +P  +  
Sbjct: 412 KALAFSVNAVHTQSLDPASPKDGALDFFINGENPNNEMEITAGNIALNKAIKEDPMKI-I 470

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------------- 394
            G        + K       + + +      +   D    +                   
Sbjct: 471 AGVTPNSGEGDGKRALAIAQIKDVFMSIQGIDKNTDRKTFLEKFFKPNDEFEFNGTTLST 530

Query: 395 ----NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
                  +T+  Y  + IG L  + +++  +            ++  +  GV++ EE + 
Sbjct: 531 IGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFAN 590

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L++    Y  + K+I   D++L  ++ G+K
Sbjct: 591 LVQFNHCYQANAKIISTVDQLLDVVINGLK 620


>gi|225863597|ref|YP_002748975.1| putative flagellar hook-associated protein [Bacillus cereus
           03BB102]
 gi|225789227|gb|ACO29444.1| putative flagellar hook-associated protein [Bacillus cereus
           03BB102]
          Length = 432

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESLNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|86157770|ref|YP_464555.1| flagellar hook-associated protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774281|gb|ABC81118.1| flagellar hook-associated protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 469

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/486 (14%), Positives = 150/486 (30%), Gaps = 35/486 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVT 51
           LL++ +             A+   N++NA+   Y R+  +   +               +
Sbjct: 4   LLSILSSGAASLAAQRAAAATASHNLQNANTPGYARQRAVLATTLPAEQAGGAWIGRGAS 63

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +           ++ L A      +     S     +++  D      P   +  L  +L
Sbjct: 64  LAQVTQARDRFLEQQLPAALGQSARSAAAASVLEAVQVL--DPEAEGGPGDALGGLHAAL 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              S+  S+  L +  +  A  +  +FN + + ++  RA AD  I  ++S      +++ 
Sbjct: 122 TQLSQAPSDPGLRQAAVAAARTLALSFNRARQGLEDARAGADARIAGDLSEANDLAAQVA 181

Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N  ++   AS   + +D LD R     ++S + G      +  D+ +    G  L   
Sbjct: 182 ALNRDVRAARASGAGEPNDLLDARQRAADRLSALTGAVPAATSEGDLSLLLPGGAALVAG 241

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           +                           V+         G++  LL      +      L
Sbjct: 242 LGASTLLAHPGPDGHLGVRLATGTVSADVAPG-------GELGGLLDASGGPLKAAVTGL 294

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D++A  +              +   GL + D                I V+    ++P+ 
Sbjct: 295 DQLAWAVGNQLDAAHRAGFGLDGSTGLDLFDVGTTPAGAA-----RRIAVSAAVAADPAR 349

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L                  G    +     +          A +   +          G 
Sbjct: 350 LA---------TATAAGQPGDGGNVLALLATTTARIATGQGADLLAGLDATGALSRITGA 400

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                        +   + +H+S    +  GV++ EEL  + + +++Y   +K+I  T +
Sbjct: 401 FGAAARGLAAAAAQDAGLADHLSALRESASGVSVDEELLEMERAQRAYEAISKVIQATSE 460

Query: 471 MLQTLL 476
           M  TLL
Sbjct: 461 MFDTLL 466


>gi|218902853|ref|YP_002450687.1| putative flagellar hook-associated protein [Bacillus cereus AH820]
 gi|218537195|gb|ACK89593.1| putative flagellar hook-associated protein [Bacillus cereus AH820]
          Length = 432

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQINRLAKSLDTTEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|229166579|ref|ZP_04294331.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH621]
 gi|228616833|gb|EEK73906.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH621]
          Length = 432

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 146/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T++    +     N  A+ +    A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPIQLNKEKEPMSVAIYGSDIPLNGGAIQSAIDTK-VKIASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   + G  +          +                        I +NP++  + 
Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|229132551|ref|ZP_04261400.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST196]
 gi|228650897|gb|EEL06883.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST196]
          Length = 432

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 147/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T++    +     N  A+ +    A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNITSVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKGSEPMTVAIYGSDIPLNGGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   + G  +          +                        I +NP++  + 
Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K     +                               ++  +     I
Sbjct: 326 SKMKISAETANKLAGITEGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I E   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQEEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|301053275|ref|YP_003791486.1| flagellar hook-associated protein [Bacillus anthracis CI]
 gi|300375444|gb|ADK04348.1| flagellar hook-associated protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 432

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIGSVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|327480026|gb|AEA83336.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri DSM
           4166]
          Length = 685

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 132/416 (31%), Gaps = 24/416 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +  Q +    NI N +   Y R+D                    T+
Sbjct: 1   MADLLSIGLSGLAASKTQLSITGHNITNVNTPGYSRQDATQATRSPQFSGAGYIGSGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R          L + +S        +S     + + A        T  + K   +L+
Sbjct: 61  VDVRRTYSEFLTSQLRSSTSLNRDVEAYKSQIDQLDSLLA--GTTTGITPSLQKFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     + V+  AE + + FNT    + +     +K++      + R    +  
Sbjct: 119 TAAEDPANIPARQLVLAEAEGLARRFNTVYDRLSEQNIFTNKQMSAVTDQVNRLAGSIGS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N+AI    A+    +D LD RD  ++++S  IG++ + ++++   V+   G  L     
Sbjct: 179 LNEAIAIAAANGKQPNDLLDARDEAVRQLSGYIGVTVVPQDDSSFNVFIGSGQPLVVGSK 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                                  G        S +  G++  L++ R+ V+    N L  
Sbjct: 239 VARLEVVPGQGDPNRHEVQFISGGS--RQGITSQITGGELGGLIRYREEVLDSTMNSLGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  +    + +     + +   G  +     D                  +  N S ++
Sbjct: 297 LALAVSDQVNTQLGQGLDLKGQVGSALFGNYNDPALAKL--------RVNAFAGNQSNVQ 348

Query: 353 DGGSVSKKFLWNVKN--LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
              S++        +  L            S  K     P A  +   TL     +
Sbjct: 349 PELSITDSSKLTTSDYRLEFDGTSFTARRLSDGKAITVSPAAPGSFPATLSFSFAD 404



 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/443 (10%), Positives = 114/443 (25%), Gaps = 10/443 (2%)

Query: 38  RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
           R +           + +Q +  +                  L +   A+ + ++      
Sbjct: 253 RHEVQFISGGSRQGITSQITGGELGGLIRYREEVLDSTMNSLGRLALAVSDQVNTQLGQG 312

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                 +     +L     + +   L        +  VQ   +     +   +D   E +
Sbjct: 313 LDLKGQVG---SALFGNYNDPALAKLRVNAFAGNQSNVQPELSITDSSKLTTSDYRLEFD 369

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 RR      +        +     +  F D  +VL   +    G + ++ +    
Sbjct: 370 GTSFTARRLSDGKAITVSPAAPGSFPATLSFSFADP-NVLPPALPRDQGFTLVLESAPAA 428

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
               S   T           ++ +     +            +   G          L+ 
Sbjct: 429 GDKFSLQPTRRGASDIATVLDQADQLAFAAPLRAQAEPQNAGNGMIGQPSIDNVQAPLIP 488

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                +                         G + +   L I  G  +  N   +    T
Sbjct: 489 ANLKDMSPLSLSYAAPVAPATTGTFTLTAPTGVTVSPATLSITPGQSNTLNYALEFGGST 548

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           + V+  +   P       +     L   ++            D  +K  +        + 
Sbjct: 549 VNVSQTFSGRP------AAGDTFTLEYNQSGVSDNRNALKLVDLQSKQTVGVTAGIAGSG 602

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            +  +     +  +    + +      +  +    +++  +   VNL EE + LIK EQ 
Sbjct: 603 FSFTDGYGELVERVGTLTAQARMDSEATGAILKQATDNRDSLSAVNLDEEAANLIKFEQY 662

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           YN S ++I     +  TL+   +
Sbjct: 663 YNASAQIIQVARSLFDTLISTFR 685


>gi|299822281|ref|ZP_07054167.1| flagellar hook-associated protein FlgK [Listeria grayi DSM 20601]
 gi|299815810|gb|EFI83048.1| flagellar hook-associated protein FlgK [Listeria grayi DSM 20601]
          Length = 509

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 159/510 (31%), Gaps = 37/510 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVT 51
           L+ +N + +  N A        +NI N +   YVR++                 +   V 
Sbjct: 3   LSDYNVSLSGMNAAQIATMVAQQNISNINTAGYVRQNVNQQALYGDGGLLQGKQTGYGVK 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V           +   +   +         S       +      N  P+ Y+     S 
Sbjct: 63  VTDIARVTSGALNLQYNQQIAKQSAAAYGSSALGQAMNLFGTLGTNT-PSDYLDNFFTSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            + +KN  +      ++ +        N     +  ++     +I   ++ L   +S+  
Sbjct: 122 GALAKNPDQQTNATALLSDMNLFEGQLNQLKLGLDDLQHTISTDIRASVTGLNDLISKFG 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N AI    A  +  +D L++RD LL ++S    +ST    NN  V   + G  L    
Sbjct: 182 KLNQAI--GNAGSNPPNDLLNERDSLLAQMSAYAKVSTTTHPNNPEVYDITIGGRLVVQG 239

Query: 232 PRD---INFEKMNSYTVTSESNPIFIDGVVVSSNQG-------------SAVPKGKIKAL 275
            +        +  SY  + + N + +    + +                +    G +   
Sbjct: 240 SKTNQIQMTAQNGSYQFSVDGNQLDLPEGQLRAAVDVGGKEIKDYQTKLNTFMDGLVDGT 299

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
            Q + +      +Q+ ++   L    + +  I    E V  L    G+            
Sbjct: 300 NQAQLNSFNNQIDQIAKINLQLQADPANETLIKNRDEAVRQLAKFPGVTVDSTNGTLSYD 359

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP------DLINHYCDSFNKNFIFD 389
                     +N             F  N              +    +  +        
Sbjct: 360 GNTFTIAAIDTNAKASDISQFSIPIFSKNPDGSLQLNPILTKDNSSQGFLGAIADQMSAL 419

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                  N TL ++    I  +  + S ++ +        +++S + S+  GVN+ EE++
Sbjct: 420 KNTTTIGNATLSDFMDGLITTVATDSSGANAIAKAENQTLDNLSNAKSSVEGVNIDEEMT 479

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M Q+LL  +
Sbjct: 480 NIMQYQSYYVANTKAMNIVNDMFQSLLNIM 509


>gi|228926774|ref|ZP_04089842.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832887|gb|EEM78456.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 432

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/492 (11%), Positives = 142/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++I   ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIGAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHGDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|229172385|ref|ZP_04299944.1| Flagellar hook-associated protein FlgK [Bacillus cereus MM3]
 gi|228610856|gb|EEK68119.1| Flagellar hook-associated protein FlgK [Bacillus cereus MM3]
          Length = 432

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  +     ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDSVELQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 NLAEANKKI--GEAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNMASVRMNGAL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                              + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDAYPLQLNKEKEPMSVEIYGLEIPLASGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +                   G +  D KL    ++ I          
Sbjct: 286 NLEELMSSVKNEVNTVMG----------KEFFVGDQAKDMKLNPEFAKDISKMKISAETA 335

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + L      + K                                      +  +     +
Sbjct: 336 NKLAAITDGNYKVGL-----------------------------------SYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             L  ++S  +        +   I +   +  GVN++EE+  L+  ++ +  ++K +   
Sbjct: 361 VGLASDKSAVNAYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAMTTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|52143720|ref|YP_083109.1| flagellar hook-associated protein FlgK [Bacillus cereus E33L]
 gi|51977189|gb|AAU18739.1| flagellar hook-associated protein 1 [Bacillus cereus E33L]
          Length = 432

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|226320912|ref|ZP_03796463.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 29805]
 gi|226233684|gb|EEH32414.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 29805]
          Length = 358

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 126/363 (34%), Gaps = 24/363 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDVRDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E              F +  +K  D++     +     +P  
Sbjct: 296 NEINELNNIAANIIEIVNEIHEADMEWIKKWKKFFSQELKLTDDRGRYDTNGNGQFDPFI 355

Query: 345 RSN 347
            SN
Sbjct: 356 FSN 358


>gi|30261738|ref|NP_844115.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Ames]
 gi|47526956|ref|YP_018305.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184566|ref|YP_027818.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Sterne]
 gi|65319005|ref|ZP_00391964.1| COG1256: Flagellar hook-associated protein [Bacillus anthracis str.
           A2012]
 gi|167633324|ref|ZP_02391649.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0442]
 gi|167639070|ref|ZP_02397343.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0193]
 gi|170686189|ref|ZP_02877411.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0465]
 gi|170706527|ref|ZP_02896987.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0389]
 gi|177650561|ref|ZP_02933528.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0174]
 gi|190566328|ref|ZP_03019246.1| putative flagellar hook-associated protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229601207|ref|YP_002866138.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0248]
 gi|254683226|ref|ZP_05147087.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734579|ref|ZP_05192291.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740987|ref|ZP_05198675.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Kruger B]
 gi|254759766|ref|ZP_05211790.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Australia 94]
 gi|30255966|gb|AAP25601.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           Ames]
 gi|47502104|gb|AAT30780.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178493|gb|AAT53869.1| flagellar hook-associated protein, putative [Bacillus anthracis
           str. Sterne]
 gi|167512860|gb|EDR88233.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0193]
 gi|167531362|gb|EDR94040.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0442]
 gi|170128625|gb|EDS97492.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0389]
 gi|170669886|gb|EDT20627.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0465]
 gi|172083705|gb|EDT68765.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0174]
 gi|190562463|gb|EDV16430.1| putative flagellar hook-associated protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229265615|gb|ACQ47252.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           A0248]
          Length = 432

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 143/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N                +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMTAEIYGSEIPLRSGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   +    +          +                        + +NP++  + 
Sbjct: 286 NLEELMSSVKNEVNTVMGKEFFVGDQAK--------------------DMKLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     +
Sbjct: 326 SKMKISAETANKLAAITDGNYKEG-------------------------LSYKQALDQFV 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        +   I +      GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQKIHVDLLEGIQQEKMGIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|168180854|ref|ZP_02615518.1| flagellar hook-associated protein FlgK [Clostridium botulinum NCTC
           2916]
 gi|182668369|gb|EDT80348.1| flagellar hook-associated protein FlgK [Clostridium botulinum NCTC
           2916]
          Length = 621

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA  + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+    S           V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   GI     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGIEIDRENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIKDKDGNYQDANL 271



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 115/360 (31%), Gaps = 27/360 (7%)

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                DA+    ++  ++ RF     +   A K    +      +    D   +     +
Sbjct: 263 DGNYQDANLVQRIDPEDVYRFSYIKDIKPSAGKKPGEAGEYTVTYYVGGDTKTEDNKRTL 322

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQG 264
            I+     +   +       T  +     I        +  +    +  +G     + + 
Sbjct: 323 TINIGSEEDFKRLDECRVLWTDKDGNAVQIKDNSGKLESDNNAIGVLGDNGKSDFKNLKL 382

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS-ENVPGLFIADGI 323
              P G+++  + ++   +  ++ QL+++A+ L  S +     + +      G       
Sbjct: 383 FEPPSGELRGQMSVQ-QDIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALDFFIN 441

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            +  N   +  +  I +N   + +P  +   G        + K       + + +     
Sbjct: 442 GENPNNEMEITAGNIALNKAIKEDPMKI-IAGVTPNSGEGDGKRALAIAQIKDVFMSIQG 500

Query: 384 KNFIFDPVAGI-----------------------NTNVTLLEYARNSIGWLEKNRSDSHD 420
            +   D    +                          +T+  Y  + IG L  + +++  
Sbjct: 501 IDKNTDRKTFLEKFFKPNDEFEFNGTTLSTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQR 560

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +            ++  +  GV++ EE + L++    Y  + K+I   D++L  ++ G+K
Sbjct: 561 MVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLK 620


>gi|161614593|ref|YP_001588558.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363957|gb|ABX67725.1| hypothetical protein SPAB_02343 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 553

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDKTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D+  K  I      + T     +  
Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412


>gi|161503729|ref|YP_001570841.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865076|gb|ABX21699.1| hypothetical protein SARI_01814 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 553

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 134/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQSALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 ATARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFGIGSPVVYSNSNNADKTVSLTAEVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D   K  I      + T     +  
Sbjct: 359 QATDYQIVFDGTDWQVTRLADNTTFTATKDVDGKLEIDGLKVTVGTGAQKNDSF 412


>gi|167553029|ref|ZP_02346779.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322438|gb|EDZ10277.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 553

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQELDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D+  K  I      + T     +  
Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412


>gi|228958018|ref|ZP_04119754.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801643|gb|EEM48524.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 432

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  +   +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                   + +NP +  + 
Sbjct: 286 NLNEFVNSLKKQVNSTMKKELFVGEDAKK--------------------LELNPDFIKDI 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     +                     D F                          
Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|163939544|ref|YP_001644428.1| flagellar hook-associated protein FlgK [Bacillus weihenstephanensis
           KBAB4]
 gi|163861741|gb|ABY42800.1| flagellar hook-associated protein FlgK [Bacillus weihenstephanensis
           KBAB4]
          Length = 432

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/492 (12%), Positives = 146/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T++    +     N  A+ +    A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVAIYGSDIPLNGGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E+   + G  +          +                        I +NP++  + 
Sbjct: 286 NLEELMSSVKGQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|194468525|ref|ZP_03074509.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194454889|gb|EDX43728.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 553

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 136/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D+  K  I      + T V   +  
Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGVQKNDSF 412


>gi|197262560|ref|ZP_03162634.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204930865|ref|ZP_03221738.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|197240815|gb|EDY23435.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204320324|gb|EDZ05528.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 553

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 ATARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D+  K  I      + T     +  
Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412


>gi|16760059|ref|NP_455676.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764539|ref|NP_460154.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142170|ref|NP_805512.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413830|ref|YP_150905.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179700|ref|YP_216117.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167994047|ref|ZP_02575139.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234109|ref|ZP_02659167.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237266|ref|ZP_02662324.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244782|ref|ZP_02669714.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264024|ref|ZP_02685997.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467136|ref|ZP_02700978.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822627|ref|ZP_02834627.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194442729|ref|YP_002040437.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448239|ref|YP_002045182.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736355|ref|YP_002114182.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249622|ref|YP_002146860.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362753|ref|YP_002142390.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198241785|ref|YP_002215954.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390530|ref|ZP_03217141.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207857309|ref|YP_002243960.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051794|ref|ZP_03344672.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213648932|ref|ZP_03378985.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865497|ref|ZP_03387616.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584313|ref|YP_002638111.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910997|ref|ZP_04654834.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289828575|ref|ZP_06546400.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|61224025|sp|P0A1J5|FLGK_SALTY RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|61224026|sp|P0A1J6|FLGK_SALTI RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|25300786|pir||AH0640 flagellar hook-associated protein 1 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|47679|emb|CAA36025.1| HAP1 (AA 1-553) [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16419700|gb|AAL20113.1| hook-filament junction protein 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16502353|emb|CAD08307.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137800|gb|AAO69361.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128087|gb|AAV77593.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127333|gb|AAX65036.1| flagellar biosynthesis, hook-filament junction protein 1
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194401392|gb|ACF61614.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406543|gb|ACF66762.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194711857|gb|ACF91078.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630439|gb|EDX49065.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094230|emb|CAR59735.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213325|gb|ACH50722.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289876|gb|EDY29237.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936301|gb|ACH73634.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602975|gb|EDZ01521.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205328045|gb|EDZ14809.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331904|gb|EDZ18668.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336421|gb|EDZ23185.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341046|gb|EDZ27810.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347332|gb|EDZ33963.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709112|emb|CAR33445.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468840|gb|ACN46670.1| flagellar hook-associated protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246394|emb|CBG24203.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992957|gb|ACY87842.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157724|emb|CBW17216.1| flagellar hook-associated protein 1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912170|dbj|BAJ36144.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320086377|emb|CBY96150.1| Flagellar hook-associated protein 1 HAP1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223801|gb|EFX48864.1| Flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616553|gb|EFY13462.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620506|gb|EFY17370.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622500|gb|EFY19345.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629651|gb|EFY26426.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632629|gb|EFY29375.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636876|gb|EFY33579.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641586|gb|EFY38224.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646487|gb|EFY42997.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650024|gb|EFY46442.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653949|gb|EFY50272.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322663339|gb|EFY59541.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670073|gb|EFY66213.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674863|gb|EFY70954.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676667|gb|EFY72734.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682589|gb|EFY78608.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686658|gb|EFY82637.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714170|gb|EFZ05741.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129453|gb|ADX16883.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195772|gb|EFZ80948.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198336|gb|EFZ83440.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204842|gb|EFZ89836.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209183|gb|EFZ94120.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213433|gb|EFZ98229.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217857|gb|EGA02572.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222145|gb|EGA06529.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224917|gb|EGA09175.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229659|gb|EGA13782.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232884|gb|EGA16980.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240619|gb|EGA24661.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242933|gb|EGA26954.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323250251|gb|EGA34140.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252625|gb|EGA36463.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258847|gb|EGA42500.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261036|gb|EGA44629.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266945|gb|EGA50430.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269986|gb|EGA53435.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623702|gb|EGE30047.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988074|gb|AEF07057.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 553

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 299 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +                      D+  K  I      + T     +  
Sbjct: 359 QATDYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 412


>gi|307699899|ref|ZP_07636950.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16]
 gi|307614937|gb|EFN94155.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16]
          Length = 512

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/522 (9%), Positives = 114/522 (21%), Gaps = 54/522 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61
           +L       +  +           NI N +   +    T    +    V        N+ 
Sbjct: 1   MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGATARLNER 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                         Q  L    +++    +     N           D      K     
Sbjct: 61  --------GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQ 112

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +  +      +   Q        VQ  +AD   ++          L     +        
Sbjct: 113 VYTRNGSFGLDAKGQVVAADGSFVQGWKADKKGKVNASGGTSNLVLPLTETMKAEPTRDV 172

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGIST------------------------------IV 211
               +        D   +  S+     T                                
Sbjct: 173 IFGGNMPADKRLLDPSKEPTSDNAFTKTQNLRVFDDKGTPHDILMEFTREDIDGTGTGSK 232

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
                      +           I  E             +      + S +        
Sbjct: 233 WRVRFYDQKVYNALPKELRQAAQIEIELPQKNKEGVAIKDLDKIKKDMLSGKDDDKFNNV 292

Query: 272 IKALLQIRDSVVP-------------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           +                           Q Q+ +  + ++ +   K    G   +     
Sbjct: 293 LDGGKDNTGKPTGNPVKNPKDLLISFDSQGQISKRDKEVLANLKMKISNYGEVVSFDDNG 352

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                   D    + ++  +     Y    +F  D    +     N   +     +   +
Sbjct: 353 TKKYGFKADKVAAEDVTIDMSKLTGYAGVNNFAVDQVDGNDAGTLNGFGVEADGTIRGTF 412

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +  ++       A  +  + L +   +   ++E   S    +          ++     
Sbjct: 413 SNGMSRAMGKIATAAFSNPLGLEKAGASY--FVESGNSGQPQIGEPGSGSRGAMTGGAIE 470

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V+L  E + LI  ++ +  + ++I  +D++LQ L+   +
Sbjct: 471 MSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELVSMKR 512


>gi|322832570|ref|YP_004212597.1| flagellar hook-associated protein FlgK [Rahnella sp. Y9602]
 gi|321167771|gb|ADW73470.1| flagellar hook-associated protein FlgK [Rahnella sp. Y9602]
          Length = 550

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/549 (13%), Positives = 166/549 (30%), Gaps = 76/549 (13%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N A +  N A    ++   NI N     Y R+  + T S             VTV 
Sbjct: 3   SSLINTAMSGLNAAQAALSTTGNNIANVSVAGYNRQTAIITQSNGISTPAGYIGNGVTVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
               E  +   K L   S+            +  + +  D   +      +S     L++
Sbjct: 63  GVNREYNSFVVKQLLGASATGSALSTQLDQASSIDDLLGD--SSTGIDATMSTFFKGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S+    + V+  A+ +   FN+SA+ +  +    ++++   +  +  + S++  +
Sbjct: 121 LTSNASDSAARQAVLGEAQGLTAQFNSSAKYLNDMNTAVNQQVTQNVDQINTYASQIAKL 180

Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           N  I     ++  + +  LDQRD L+ +++ + G+    ++ +   +  ++GT L     
Sbjct: 181 NSQITATRGSTGQEPNALLDQRDQLVSQLNNVTGVVVTQQDGDTYNISFANGTPLVSGGN 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +S   +  +  +      VS  Q S +  G +   L  R   +    NQL +
Sbjct: 241 AKTVVAMPSSADPSKLTVGMTQPDGSVSEIQESRLTTGSLGGTLAFRKDNLEPAINQLGQ 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  SF+  +    +     G               +             +      
Sbjct: 301 LALALSDSFNTTNKAGFDLNGDAGTDFFSFTGATTVSNTKNTGSAQLSVAYTDTAAVKAS 360

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---------------------PV 391
           D         W+V  ++    +        N +   +                      V
Sbjct: 361 DYTMAYNGTSWDVTRVSDGAKITPTAGTDSNGDPTMNFDGLSVSVTGTPNTNDSITIKTV 420

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK--------------------------- 424
           + +  ++ L     + I       S   D                               
Sbjct: 421 SNVAGSMNLAISDSSLIAAAGAADSGVSDNTNAQKLLNLQTAKLVEGKSTLSGAYASMVS 480

Query: 425 ---------------SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                             +   ++    +  GVNL EE   L + +Q Y  + +++    
Sbjct: 481 NVGNQVSTLTTTSTSQANIVTQLTAQQQSISGVNLDEEYGDLQRYQQYYLANAQVVQTAS 540

Query: 470 KMLQTLLEG 478
            +   ++  
Sbjct: 541 TIFDAIINI 549


>gi|229189835|ref|ZP_04316846.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 10876]
 gi|228593643|gb|EEK51451.1| Flagellar hook-associated protein FlgK [Bacillus cereus ATCC 10876]
          Length = 432

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYADIEVSYEATNPNIATVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  +   +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                   + +NP +  + 
Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     +                     D F                          
Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|330502740|ref|YP_004379609.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina
           NK-01]
 gi|328917026|gb|AEB57857.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina
           NK-01]
          Length = 681

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 130/379 (34%), Gaps = 14/379 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + N   +         A    NI N +   + R++T+                  T+
Sbjct: 1   MADLLNIGLSGLAANKTSLAVTGHNIVNVNTPGFSRQETIQATRTPQFSGAGYIGSGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  +  + + ++             + ++ S     N   T  + KL  +L+
Sbjct: 61  TDVRRIYNDFLNTQVRSSTALNS--DTKAYLSQINQLDSLLAGSNTGVTPAMQKLFAALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     + V+  AE + + FN     + +  A  +K++      + +  + +  
Sbjct: 119 TAAEDPANVPARQLVLSEAEGLAKRFNNIYDRLYEQNAFINKQLSAVTDQVNQLATSIAG 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI   +++    +D LD R+  ++K+SE +G++ + +++N   ++   G  L     
Sbjct: 179 YNDAIAVASSNGQAPNDLLDAREEAVRKLSEFVGVTVVPQDDNSYNLFIGSGQPLVVGKN 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                            + I         N  S +  G++  LL+ R  V+    N +  
Sbjct: 239 AARLEVTPGLSDPLR--SEIQFVSGNSKQNVSSLITGGEMGGLLRYRQDVLDTSMNSIGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           ++  +    + +     +     G  +   I D      + ++     +P    N S   
Sbjct: 297 LSLSIADQMNRQLGQGLDLNGEFGKELFRPINDPLLLAQRSLARIGNSDPMANLNVSITD 356

Query: 353 DGGSVSKKFLWNVKNLAGY 371
                +  +     +   Y
Sbjct: 357 TTRLTTSDYEVEFTSATEY 375



 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/437 (10%), Positives = 113/437 (25%), Gaps = 22/437 (5%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             +       +       +++ D  +++    +      Q    L + +  +  +     
Sbjct: 266 NVSSLITGGEMGGLLRYRQDVLDTSMNSI-GRLSLSIADQMNRQLGQGLDLNGEFGKELF 324

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
             I+      +               I N++ +     +     +   +D + E      
Sbjct: 325 RPINDPLLLAQRSLA----------RIGNSDPMANLNVSITDTTRLTTSDYEVEFTSATE 374

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            + R  S+  +   +      +   A +           +S   G          M    
Sbjct: 375 YVVRRSSDGAMFPASPATFDINTVPAPEID------GFSLSVAQGTFAAGDRFTVMPTRN 428

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           +   T  +    +         T +S  N           +    +     +A ++    
Sbjct: 429 AARDTRADMKNPEELAFAAPLKTESSPGNTGTGTVSQPRLSTEIDIYDPAAQADMETSLR 488

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
             P  +  +                    +        ++ I          +       
Sbjct: 489 NAPPMRIVMGAAGGATQSYEVLDINGNVINSGSITPGQSNKITINVPANPPNVPSAFAYE 548

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                 PS        +    +N   ++   + +N            +P A   T  +  
Sbjct: 549 VSIGGRPS-----QGDNFSVSFNTNGVSDNRNALNLVDLQKKSVIGINPAAPDTTGASFS 603

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +   + +  +    S +      +  +    +++  +  GVNL EE + LI+ EQ Y  S
Sbjct: 604 DAYGDLVERVGTLTSQARVDGEATGAILKQATDNRDSVSGVNLDEEAAKLIQFEQYYQAS 663

Query: 462 NKLIMFTDKMLQTLLEG 478
            ++I     +  TL+  
Sbjct: 664 AQIIQVARNLFDTLINS 680


>gi|229149940|ref|ZP_04278168.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1550]
 gi|228633621|gb|EEK90222.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1550]
          Length = 432

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSQYADIEVSYEAINPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  +   +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                   + +NP +  + 
Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     +                     D F                          
Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 363 --IASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|307823537|ref|ZP_07653766.1| flagellar hook-associated protein FlgK [Methylobacter tundripaludum
           SV96]
 gi|307735522|gb|EFO06370.1| flagellar hook-associated protein FlgK [Methylobacter tundripaludum
           SV96]
          Length = 612

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/466 (14%), Positives = 152/466 (32%), Gaps = 27/466 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  +   + +    A +   +   NI N   + Y R+                  + V V
Sbjct: 1   MSGLLATSLSGLLVAQRSLETTQNNISNIHTEGYSRQRVEQGTKPAQFTGDGYVGQGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +K L +  SA G            + + AD   +      +++  ++L 
Sbjct: 61  TNITRSYDQFINKQLSSSLSAFGDADRYHQLATSVDNIMAD--SSTGMAPVLNRFFNALS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           S S + S     + ++  A+ + QNFNT   + ++IR   + +I  +++ +    + +  
Sbjct: 119 SVSSDPSSIPSRQVLLSEADALAQNFNTIGGKFEEIRNLNNSDIGAKVNEINTLAAAIAD 178

Query: 173 VNDAIKFK---TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +N  I      T      +D LD++D LL ++SE++ +S + + N    V+  +G  L  
Sbjct: 179 LNVKIIANVGKTQGLKQPNDLLDKQDALLSRLSEMVNVSVVPQKNGTSSVFIGNGQALVL 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +          I      +  +  + +  G +   L+ RD V+   Q +
Sbjct: 239 NGGAATFTTLESELAPGKLEIGIQTANGTI--DVTNQISGGSLGGALRFRDEVLDPAQQK 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L ++A  L   F+       +     G  +     D    +   ++           + +
Sbjct: 297 LGQVAASLAMEFNAMHQKGFDLNGTAGSDLFKFAGDEVPVIQSSLNTGNAAVTASFQDVN 356

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +      + +K + G    +    D+   N             TL   A     
Sbjct: 357 VNPSATANLDFSDYKLKYVGGTDYTLTRTRDNQVINLTATDTVPATGVFTLSFAATQPAK 416

Query: 410 ---------WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                     ++ + S    + +  + V      +     GVN+ +
Sbjct: 417 TDVTALPGIDIKVDASGGKTIAVGDESVIRPTYNAAQKI-GVNITD 461



 Score =  110 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 103/391 (26%), Gaps = 12/391 (3%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
               S    + ++   N           + A   ++    +A     +            
Sbjct: 223 NGTSSVFIGNGQALVLNGGAATFTTLESELAPGKLEIGIQTANGTIDVTNQISGGSLGGA 282

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
              R  + +           + +           D+     S++   +          + 
Sbjct: 283 LRFRDEVLDPAQQKLGQVAASLAMEFNAMHQKGFDLNGTAGSDLFKFAGDEVPVIQSSLN 342

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           T +          ++N     +   + +    ++ G   +  +        + A   +  
Sbjct: 343 TGNAAVTASFQDVNVNPSATANLDFS-DYKLKYVGGTDYTLTRTRDNQVINLTATDTVPA 401

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           + V        + A+  + +    D     S         + +        Q I   I  
Sbjct: 402 TGVFTLSFAATQPAKTDVTALPGIDIKVDASGGKTIAVGDESVIRPTYNAAQKIGVNITD 461

Query: 341 NPQYRSNPSFLRDG-----------GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
             +  +  +   D            G      L N   +     +     ++     + D
Sbjct: 462 PKKIAAATNIEVDPVTKLPVQKLAGGVPVVDALGNPVYVTINGAMPGDNRNALQLADLKD 521

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            ++ +    +  +     +  +      +       + + N    +  +  GVNL EE +
Sbjct: 522 KLSMLGGKASFNDAYAQIVSGVGTLTQSAQFSSSAQETLLNQAKGARESLAGVNLDEEAA 581

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LIK +Q+Y  S + I     +  TLL  V+
Sbjct: 582 NLIKFQQAYQASAQSISVARSLFDTLLGAVR 612


>gi|229043492|ref|ZP_04191202.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH676]
 gi|228725870|gb|EEL77117.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH676]
          Length = 432

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 140/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGGSKGYAPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQMSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     +  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVSRLAKNLDTVEAQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I       N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSQYADIEVSYEATNPNIASVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   +         V  S     +  G I + +  +   +  +++
Sbjct: 236 ---------TVNGQDTYPLQLQKDKKPMSVQISGTDIPLSGGTILSAIDTKAK-ITNYKD 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L+E    L    +                                   + +NP +  + 
Sbjct: 286 NLNEFVNSLKKQVNNTMKKELFVGEDAKK--------------------LELNPDFIKDI 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     +                     D F                          
Sbjct: 326 SKMKISAETANNLAAITDKGYKDGLTYKQALDQFLVG----------------------- 362

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 363 --VASDKSSVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|170760196|ref|YP_001788056.1| flagellar hook-associated protein FlgK [Clostridium botulinum A3
           str. Loch Maree]
 gi|169407185|gb|ACA55596.1| flagellar hook-associated protein FlgK [Clostridium botulinum A3
           str. Loch Maree]
          Length = 621

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 85/272 (31%), Gaps = 19/272 (6%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N  ++          +   NI NA  + Y R+      +             
Sbjct: 1   MSGLFGTLNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V       +  D          GQ      F +  E +  ++  +   + 
Sbjct: 61  PGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENIL-NEPTDVGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              K  D+    S           V+  A  +    N +  E+ K++ +   EI+  +  
Sbjct: 120 LFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFE 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L+++  +N  I     +    +D +D+RD+LL K+S   G+     N   + + TS
Sbjct: 180 VNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFEGIKLSTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +    ++        E               +
Sbjct: 240 NHAKNYQDKTSPFGGEPPQIKDKDGNYQDANL 271



 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/450 (10%), Positives = 130/450 (28%), Gaps = 34/450 (7%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS--- 119
             + +   +S + Q   L       ++     +        +     +      +     
Sbjct: 173 IQQTVFEVNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFE 232

Query: 120 ----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                         +            ++      DA+    ++  ++ RF     +   
Sbjct: 233 GIKLSTSNHAKNYQDKTSPFGGEPPQIKDKDGNYQDANLVQRIDPEDVYRFSYIKDIKPP 292

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
             K    +      +    D   +     + I+     +   +       T  +     I
Sbjct: 293 TGKKPGEAGEYTVTYYVGGDTKTEDNKRTLTINIESEEDFKRLDECRVLWTDKDGNAVQI 352

Query: 236 NFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                   +  +    +  +G     + +    P G+++  + ++   +  ++ QL+++A
Sbjct: 353 ENNSGKLESDNNAIGFLANNGKSDFKNLKLFEPPSGELRGQMSVQ-QDIDKYEEQLNKLA 411

Query: 295 RVLIGSFSEKDPIAGNSEN-VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           + L  S +     + +      G        +  N   +  +  I +N   + +P  +  
Sbjct: 412 KALAFSVNAVHTQSLDPAGPKDGALDFFINGENPNNEMEITAGNIALNKAIKEDPMKI-I 470

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------------- 394
            G        + K       + + +      +   D    +                   
Sbjct: 471 AGVTPNSGEGDGKRALAIAQIKDVFMSIQGIDKNTDRKTFLEKFFKPNDEFEFNGTTLST 530

Query: 395 ----NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
                  +T+  Y  + IG L  + +++  +            ++  +  GV++ EE + 
Sbjct: 531 IGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFAN 590

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L++    Y  + K+I   D++L  ++ G+K
Sbjct: 591 LVQFNHCYQANAKIISTVDQLLDVVINGLK 620


>gi|226327737|ref|ZP_03803255.1| hypothetical protein PROPEN_01610 [Proteus penneri ATCC 35198]
 gi|225203441|gb|EEG85795.1| hypothetical protein PROPEN_01610 [Proteus penneri ATCC 35198]
          Length = 463

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 143/422 (33%), Gaps = 14/422 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS  ++ N A +  N A    +++  NI N + K Y R+ T+   +             V
Sbjct: 1   MS-NSLINTAMSGLNAAQAAMSTVSNNIANQNVKWYNRQMTVFNENSGTMTGNGYIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     E        ++   S            +    + AD    N  +  I +   S
Sbjct: 60  NVSRIHREYNEFLAGQMNRAMSKQSALNSYTKNISQINDLLAD--KGNDVSSAIDEFFTS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L + + N  ++    TVI  AE +V  F  + + ++ +  D + ++     N+  +  ++
Sbjct: 118 LPNVTNNAEDNPARTTVIGKAEAMVNMFAKADQSLRDLEKDINSQVTNTSKNINEYTKQI 177

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N+ I      +  D +D LDQRD L+Q+++ ++ +    ++   + V  ++G  L  
Sbjct: 178 AKLNNEISRSKGFNGADPNDLLDQRDRLIQELNTLVDVQVTQQDGGFVNVTFANGLPLVS 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++                V       +  G++    + R+ V+   +NQ
Sbjct: 238 GTRSYEVSAIPSNKNSERLVLGYSNGIDEVREVDAKRIKGGELGGAYRSREEVLDPSRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+++A VL   F+++     + +   G    +          +   +         +   
Sbjct: 298 LNQLALVLGDQFNKQHEQGFDLDGKNGEKFFELGGAHVMPNGKNKGDATFDVKYTDTKAV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              D         W+V    G   +      +    F    +    T          S+G
Sbjct: 358 KAADYTVKYDGSKWDVTVEPGGRKVNAKVSATGELEFEGMSIKINGTAQKEDSIIVQSVG 417

Query: 410 WL 411
            +
Sbjct: 418 NV 419


>gi|254993553|ref|ZP_05275743.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J2-064]
          Length = 506

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/520 (14%), Positives = 159/520 (30%), Gaps = 55/520 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342
           +++  +  L  +  +      N        I D +K   N      +    +        
Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346

Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397
                +   +            +          I  +  S  K  +   +     N    
Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406

Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                              T   +    I  +  + S S           N +SES  + 
Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKLSL 466

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GVN+ EE++ +++ +  Y  + K +   + M++ LL  +
Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|312126828|ref|YP_003991702.1| fagellar hook-basal body protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776847|gb|ADQ06333.1| fagellar hook-basal body protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/495 (9%), Positives = 131/495 (26%), Gaps = 26/495 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++     + +       +   I  NI N +   +                        S 
Sbjct: 1   MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D     +    + ++           +   +IS     
Sbjct: 121 FSLDKMGNLVTATGLNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATDKISFDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            ++  + +  I        +  D L+         S  I  S    +   +    +   T
Sbjct: 181 SADTKIYSGQIT-------NYEDLLNVPADSKYSTSFKIYDSQGKEHTLQLTFVKTSDNT 233

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
               V      + + +     E      + +  +++  + + +G I      +       
Sbjct: 234 WEWFVDAPRVKKNIGTAQNPDEKYVYVDEMLDANNDYDNFIARGTITFGQAGKVLDDENT 293

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            +           + +    I   ++ V  +       + D      I+  +    Q+ +
Sbjct: 294 TDVEGIAITGGRITGNGTFTIKFKNDVVNPITFKVNSAEFDVNDNTNIAFFLKNITQFGN 353

Query: 347 NPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
             S +R    +          N+     +   Y +  N+      +A       L     
Sbjct: 354 MESSIRVAQMTGYSAGSLQGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRIGD 413

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   ++    S   ++          IS+       V+L +E + +I  ++ Y  + ++I
Sbjct: 414 NL--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVI 471

Query: 466 MFTDKMLQTLLEGVK 480
             +D++LQ L+   +
Sbjct: 472 TASDELLQDLVNIKR 486


>gi|168333623|ref|ZP_02691883.1| flagellar hook-associated protein FlgK [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 578

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/577 (10%), Positives = 157/577 (27%), Gaps = 105/577 (18%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENVT 51
                +    A +       N+ N +   Y R+  +                      V+
Sbjct: 3   LTTTVSGLTAAQKGLMVTGHNLANINTPGYTRQQLLQHETGYRDVRKYGGYTQQVGMGVS 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
               R    N  D+     ++ +   +   +     E +  D+    S +  +       
Sbjct: 63  ETEIRQIRDNFADERYRQENAKLSFYQTQNTTINEIETIL-DEPNGESLSKVLDAFWGQT 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  + N +      T I NA  +++  N     +Q  + + + +I   +  +   + E+ 
Sbjct: 122 QKLATNPAGLEERMTFIQNANVLIKKVNYIQESLQDYQTNLNMQIVSMVRRVNELVDEIH 181

Query: 172 ---------VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI------------ 210
                     +N             +   +    +    +E    + I            
Sbjct: 182 TLNEKIIEEELNGVANANDYRDKRNNALDELSGYIDINYAEQPDSTVIVKISGSNGTALL 241

Query: 211 --------------VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256
                          ++     +  + G  LF+        ++  +    ++S  +    
Sbjct: 242 EGGFITKIDLEQTAPKSPYVNPIIRNTGDALFDFTVTSDTIKEAVTAANGNDSGALKALL 301

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDS-------VVPIFQNQLDEMARVLIGSFSEKD---- 305
           +   S   +A  +    A+             ++P  Q +LD   + ++   +E      
Sbjct: 302 ISRGSIPANAATEWDDIAINDNYSVDAEGNSFIIPELQKKLDVFTKEIVMMMNESFSGYG 361

Query: 306 -------------------PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR- 345
                              P A +   +          D+D    +       + P    
Sbjct: 362 VGLEKGIIGPPIFVPIYKAPAAPDMTKIAVDMNNITQADIDAYNYEMQQYYTAIEPHLTA 421

Query: 346 ------------SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF----D 389
                          + L     V      N     G  +L+  +   + +   +    D
Sbjct: 422 MNIEVNTKLLAEGGYNHLGTVPIVDSDGNPNNPGNIGSNELVQDFLTKWGEPKTWYDEVD 481

Query: 390 PVAGINTNVT-------LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           P  G+    T       + ++    +  + +      +   +       ++    +   +
Sbjct: 482 PATGVKPKSTPKSKFLNVTDFYAELVTDIGQKGYIYSNKAAEKMEAVESVNNERWSMSAI 541

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  EELS ++K + +YN S +++   D M+  ++  +
Sbjct: 542 SQDEELSMMMKYQYAYNASARMLTVLDGMMDVVINKM 578


>gi|224532252|ref|ZP_03672884.1| flagellar hook-associated protein FlgK [Borrelia valaisiana VS116]
 gi|224511717|gb|EEF82123.1| flagellar hook-associated protein FlgK [Borrelia valaisiana VS116]
          Length = 627

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/457 (11%), Positives = 144/457 (31%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +     +           ++  N+ NA    Y R+      +               
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTTTPLYAPQLNRAKKQG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIMVQSIDRVKDELLNTRIIEESHRLGYWTSKDKFISMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S +  +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +IGIS   + + +  +  S+G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLIGISIENKQDPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    ++ N ++ +   V+         GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTKWNILWSNNDKVNLKT------GKLGSLLHIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              ++L+ +A  ++   +E        +   G         L +   +  +         
Sbjct: 296 NEIDELNNIAVNIVELVNEIHRAGHGMDKKNGRNFFSQELKLTDAGGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNDIIEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKFEIKAVKEQENENITFKIKHIEDSG 447



 Score =  103 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 104/345 (30%), Gaps = 8/345 (2%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
            ++  +    D+EI+ EI  L      +  + + I          +        L    +
Sbjct: 281 GKLGSLLHIRDEEIKNEIDELNNIAVNIVELVNEIHRAGHGMDKKNGRNFFSQELKLTDA 340

Query: 203 EIIGISTIVRNNNDMVVYTSDGTT-------LFETVPRDINFEKMNSYTVTSESNPIFID 255
                +      + + ++  + T        L             N       + P  + 
Sbjct: 341 GGRYDTNGNGQFDSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNDIIEIPYNAPDTVQ 400

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
            V+   N  +A    +I +  +     V   +N+        I              N  
Sbjct: 401 DVINRINNSNAQVTARINSEGKFEIKAVKEQENENITFKIKHIEDSGLFLTKYTGILNES 460

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYPDL 374
           G   A   K++D         T  ++P         + D        +            
Sbjct: 461 GPEGAYDYKNIDTIEKLTPKSTYSISPLKNPAAWIKVADTIDSDPSKIAAGIKNPTNEIS 520

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           I     +   +   +    I  N+TL +Y  N+   +      S         +   +++
Sbjct: 521 IGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDLTD 580

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              +  GVN  EEL+ +I+ +Q++  ++K I  + +++ T++  +
Sbjct: 581 LRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625


>gi|327393477|dbj|BAK10899.1| flagellar hook-associated protein 1 [Pantoea ananatis AJ13355]
          Length = 546

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/548 (13%), Positives = 166/548 (30%), Gaps = 75/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A    ++   NI N     Y R+ T+   +             V V
Sbjct: 1   MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTILAEANSTLQGKSYYGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E  +     L   S+          +  +  +         + +  I     +++
Sbjct: 61  TGVQREYDSFIAAQLRGSSATYNAAN--TQYSQVSNIDDLMSTSTTNLSTAIQGFFSNMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N ++    ++++ N++ +V  F T A+ +  ++   +  I  ++  +  F ++++ 
Sbjct: 119 NVVSNANDPAARQSMLSNSQGLVNQFQTQAQYLTNMQNSVNTNIASDVDQINTFTTQISN 178

Query: 173 VNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    TA+    +D LDQRD L+  ++ I+G++   + +    V  ++G +L    
Sbjct: 179 LNQQIAKLSTANGATPNDLLDQRDQLVNGLNNIVGVTVS-QQDGSYTVSMANGLSLVNGF 237

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S  +T  +               S++  G +  +L  R   + + QNQL 
Sbjct: 238 QSTKLVAMPSSSDLTRTTVGYVDPQAGNVQLPESSITTGSLGGMLSFRSQDLDLAQNQLG 297

Query: 292 EMARVLIGSFSEKDPIAGNSE----------NVPGLFIADGIKDLDNKLCQGISETICVN 341
           ++A     SF+       +S             P                   + +    
Sbjct: 298 QLAAAFTTSFNAVHKQGFDSNGNQGVDFFNIGTPTAQGDSKNTSSATLTAAWTNTSALQA 357

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-------- 393
             Y  +        +                 +     D  +      P A         
Sbjct: 358 SNYTVSYDGTNWSATRLSDNSKTTLTPTTSGGVTTLNLDGMSLTVNGTPNAKDSFLVKPV 417

Query: 394 -------------------------------------------INTNVTLLEYARNSIGW 410
                                                      +N N T+ +     +  
Sbjct: 418 QNVVNGMSVAITSGSQIAAAAATGGESDNRNAQKLLALQDAKIVNGNATISQAYGAMVST 477

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +              Q V   ++    +  GVNL EE + L K +Q Y  + +++     
Sbjct: 478 VGNKTQALKTASTTQQNVVTQLTNRQQSVSGVNLDEEYANLTKYQQYYMANAQVLKTAST 537

Query: 471 MLQTLLEG 478
           +   LL  
Sbjct: 538 VFDALLSI 545


>gi|289548869|ref|YP_003473857.1| flagellar hook-associated protein FlgK [Thermocrinis albus DSM
           14484]
 gi|289182486|gb|ADC89730.1| flagellar hook-associated protein FlgK [Thermocrinis albus DSM
           14484]
          Length = 516

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/523 (12%), Positives = 158/523 (30%), Gaps = 54/523 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61
           L A F           +      RN+ NA N +Y + +      +P  + +         
Sbjct: 2   LGATFGIVSQGLQILRKAIEIRNRNVLNASNPDYAQENPRIESFAPVGIKLEDVERVRNF 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                 +   S +             E +  +         YI+    + +   K+ +  
Sbjct: 62  YLLSERNNRLSVVNYLEERIKKGEAVEDLFQEFTGGVGGAEYINNFFRAFQDLMKDPTNV 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI---- 177
                ++  A  ++        ++ ++       ++  +  +     +L  +N  I    
Sbjct: 122 GARADLVRQANTLMGYIRDRKGDMDRVFNSTVYNLQRYVGRVNELTQKLAQINRDILTTY 181

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
               +S  D  + LD+RD LL+++SE+I +     +   + V  + G  L E        
Sbjct: 182 ARTYSSGKDYKNLLDERDRLLRELSELINVRVQEDDIGRVRVEMAGGFLLVEEGRS---- 237

Query: 238 EKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               + T  + S  +F +    S+ +    +  G+IK  ++     + ++   LD +A+ 
Sbjct: 238 ---WTITYDASSRKVFWNSKDGSTVDVTGHINGGRIKGAVEFL-KDLDLYLQGLDNVAKR 293

Query: 297 LIGSFSEKDPIAGNSENVPGLFI-----------------------ADGIKDLDNKLCQG 333
           LI           +      +                               L +     
Sbjct: 294 LISRVKLPVIKGSDQYYWTTVKNSPGDPIGESGSITLVGVSSVTVSYQPSDTLQDIANII 353

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            ++           P        VS    + + +  G   +            +   +  
Sbjct: 354 NAQNAGFTASVVQEPDGTYTLRIVSSDPSYQITDSNGNIGVKVFTGTGLQDGGVNPQLPS 413

Query: 394 INTN-----------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
           +  N                   L +  +  +  +   ++     H   + + + ++   
Sbjct: 414 LMGNLDYSVADRFFSLSSRWWEDLKDLYQKLVSDISSTQNTLKKQHEIEKALLDSLNARL 473

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           S   GV++ +E   ++++++SY    K +   D +L+T L  V
Sbjct: 474 SELQGVSIDQEFMEIMQLQRSYEALAKTVSAMDDLLRTTLNMV 516


>gi|33592479|ref|NP_880123.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I]
 gi|33572125|emb|CAE41667.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I]
 gi|332381896|gb|AEE66743.1| flagellar hook protein FlgE [Bordetella pertussis CS]
          Length = 473

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/479 (11%), Positives = 115/479 (24%), Gaps = 14/479 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +  +  N ASQ    I  NI N+    +            +  V       + N+  
Sbjct: 2   GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +                          D           +       Y  N     
Sbjct: 62  TVGNISTTGGEYDMAIDGGKGF-----FRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEISNLRRFLSELTVVNDAIKF 179
           L             +       +             +      +    +        +  
Sbjct: 117 LTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPPEDGLVELDG 176

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T    +A              +   G   I        + +  G   ++ +   I F+ 
Sbjct: 177 TTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLTSQPGYQPYKPLVAGIPFDP 236

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N  + T +      D +  S        K        + +    +    +         
Sbjct: 237 TNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQAMQVNGGASQT 296

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
              +      N      +  A+   +        I+ +     QY S+ +  +   +   
Sbjct: 297 LNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLEITVSYNGVTQYGSDFAP-KVVQNGYS 355

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
              +   ++     L+  Y +   +      +A  N    L     N   W+E + S   
Sbjct: 356 SGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNN--AWVETSESGQA 413

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L          I+        V++  EL  +I  +++Y  + + I   D+++Q L+  
Sbjct: 414 TLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472


>gi|302382561|ref|YP_003818384.1| flagellar hook-associated protein FlgK [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193189|gb|ADL00761.1| flagellar hook-associated protein FlgK [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 707

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 133/404 (32%), Gaps = 10/404 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL ++ N A +    A QQ   +  N+ N +   YVR+    T          V V   
Sbjct: 1   MSLNSILNIANSGLQAAQQQLRVVSDNVSNVNTPGYVRKIAEQTSLTTQGVGSGVEVTRI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R            +  +   +Q +        + +  D   ++     I ++  S  + +
Sbjct: 61  RLATDRFLQAASLSAGAEAARQGVRYELYDRIQSLFGDPGGDSGFFSQIDEVFSSFAASA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           ++ +     +  +  A+ V       + ++Q +R DAD  I+  I      L ++  +N 
Sbjct: 121 EDPTSGPRRQDALFKAQAVFDEATRISGQIQAVREDADGRIQSAIEKANGLLQQIETLNT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I   T    DA     Q+  L+ ++S ++ +    R+   + + T  G  L       +
Sbjct: 181 DIARATVLNGDASGAQTQQARLVDELSTLLDVQVTQRSVGGVSIRTGAGIQLAGNGAATL 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            + +  +    +  N I++     +       +  G+IK LL++RD+  P    +L E+ 
Sbjct: 241 EYHRAGTVNAETSFNDIYVTEKGGTPRALADGLKSGEIKGLLELRDNEAPATAERLAELV 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +    +       +      L   +  + LD  L      T         NP+     
Sbjct: 301 TKVADELNRAHNANSSVPAPTTLTGRNVGQALDTALTGFAGRT----TVAVVNPTTGAIT 356

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                 F  +   + G       +    N        A      
Sbjct: 357 TRADIVFSGSTLTINGTASTPASFLTDLNTALGGAATATFTNGA 400



 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 100/386 (25%), Gaps = 9/386 (2%)

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
             +    ++           N +   +               N +A        D +  +
Sbjct: 329 GQALDTALTGFAGRTTVAVVNPTTGAITTRADIVFSGSTLTINGTASTPASFLTDLNTAL 388

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD-VLLQKISEIIGISTIVRNNN 215
               +      +       A     A           R       +++++        + 
Sbjct: 389 GGAATATFTNGALKITAAGANGVAVADDPTTPSSKAGRGFSHYFGLNDLVSAERPALFDT 448

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
            +   +  G T  ET+      E  +       + P     V    +  +    G  +  
Sbjct: 449 GLTTTSQHGFTPGETLTFRFTSETGSRMRDIEVAVPAGTGTVGELISALNNTTTGVGRYG 508

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
               D          +          +    +   +  VP       +  +   +    +
Sbjct: 509 TFALDGSG-------ELKFTGFGDPAARMSVLEDTTTQVPSGVSVTELFGIGGGVRASRA 561

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI- 394
           +   +    R +PS L                 +G         D+      F       
Sbjct: 562 DGFTIRTDIRQSPSKLALAQLNLSATAGTAALSSGDGRGALLLADAGQVTARFSAAGTSP 621

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
             ++++  YA    G +    + +      +Q +        SN  GVNL EEL  +   
Sbjct: 622 GGSLSVSRYASELSGEIGGTAASAKTRQQSAQALATEADARQSNYEGVNLDEELVLMTTY 681

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q++N S +LI     M  TLL  V+
Sbjct: 682 QQAFNASARLIQAAQDMYDTLLGMVR 707


>gi|16802747|ref|NP_464232.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           EGD-e]
 gi|224501990|ref|ZP_03670297.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           R2-561]
 gi|16410094|emb|CAC98783.1| lmo0705 [Listeria monocytogenes EGD-e]
          Length = 506

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 154/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GI---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G             Y ++ +             W +            +      +    
Sbjct: 357 GGVDHPVDTLGTSTYVTDVNDFSIPIFAQSSGKWILNPAITSNADNKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           + ++ES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|146296289|ref|YP_001180060.1| hypothetical protein Csac_1266 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409865|gb|ABP66869.1| protein of unknown function DUF1078 domain protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 484

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/494 (7%), Positives = 111/494 (22%), Gaps = 26/494 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISP 47
           ++     +         +   I  NI N +   +                      T S 
Sbjct: 1   MMRSMFSSITSLRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVIKAASAPDTTSG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISK 106
              +   Q     ++    ++    ++ +           +          +P       
Sbjct: 61  RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPRFTRAGN 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +   + D     +    + ++           +   +IS     
Sbjct: 121 FSLDKMGNLVTANGLNVLGWMADPVNNQIDTTKSPSKINILAYPTLAPKATDKISFDGNL 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            ++       I                 D       ++            + V   +   
Sbjct: 181 SADTVAYTGQIAKYEDL------LNVPADSKYSMSFKVYDSQGKEHTLQLIFVKNGNNQW 234

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
            +      +      +       + I  +           +  G+   +    ++     
Sbjct: 235 EWFVDAPRVKKNIGTAEVYAYVDDMIDANNNYDEFIARGTITFGQAGKVFDDENTPNVEG 294

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                             + +      +     +      DN       + +        
Sbjct: 295 IQITGGRVYDSANGTFTINFVGNAVNPITFKVNSSQFDVNDNTNIAFFLKNLTQFGNM-- 352

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + S      +          N+     +   Y +  N+      +A       L     N
Sbjct: 353 DSSIRVAQMTGYSAGSLQGFNIDATGKITGIYSNGLNQLIGQIAIATFANPAGLQRIGDN 412

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              ++    S   ++          IS+       V+L +E + +I  ++ Y  + ++I 
Sbjct: 413 L--YINTVNSGDPEIGTPGSGSRGTISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVIT 470

Query: 467 FTDKMLQTLLEGVK 480
            +D++LQ L+   +
Sbjct: 471 ASDELLQDLVNIKR 484


>gi|313672183|ref|YP_004050294.1| flagellar hook-associated protein flgk [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938939|gb|ADR18131.1| flagellar hook-associated protein FlgK [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 582

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/414 (13%), Positives = 135/414 (32%), Gaps = 16/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    A         NI N + + Y R+  + T                 +
Sbjct: 4   IFGILHTGVSGLYVAQSGIDVTGHNIANLNTEGYSRQRVIITTESPLNVRPGPFGRGAKL 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   ++  K L   +S++     L++     ++   +    +     + +  ++  
Sbjct: 64  DAVVRTYDDVLAKTLRNETSSLNYWENLRTSMDNIKIYFNELESGSGLGDNLKEYFNAWS 123

Query: 113 SYSKNL-----SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             S           +  +T+I+ A  +      S   ++ IR   D+ I+ +I  +    
Sbjct: 124 DLSNTAPDNSDESYVKRRTLIEKATTLTMKIRESYNNLEGIRRQNDQNIKNKIEKINDLA 183

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +  +N  +    +  + A+D  D+RD LL  +S+ +   +  ++N  + V+      +
Sbjct: 184 KNIAFLNYQVAKSESGGNIANDLRDKRDKLLDDLSKEVNFVSSEQSNGQISVFIGGIAIV 243

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             +    +   +  +     +             N    +  G I   ++ RDS +  + 
Sbjct: 244 DSSESNKLFAVENPNNNDHFDIYWGAGGIDKPQINITDKIIGGAIYGEIKTRDSYIGKYT 303

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLDE+A  LI S ++   I    +    +   +G+ +   K  +   +      +    
Sbjct: 304 AQLDELASSLIVSTNQLHSIGQGLKRFDQITSNNGVINPSYKFNENTGKFNYPINKGTFR 363

Query: 348 PSFLRDGGSVSKKFLWNV-KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
            +       V   +  +V         +I     +          A ++ N T+
Sbjct: 364 IALYNSENQVENYYDIDVDPEKDSLNSIILKISSADGDPSGGKIQAFLSENNTI 417



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/427 (10%), Positives = 118/427 (27%), Gaps = 15/427 (3%)

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R +N       +   +      + +           +  +  N       KL D L  
Sbjct: 163 GIRRQNDQNIKNKIEKIN---DLAKNIAFLNYQVAKSESGGNIANDLRDKRDKLLDDLSK 219

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
               +S +     +      +    ++ + ++  +    + +                 +
Sbjct: 220 EVNFVSSEQSNGQISVFIGGIAIVDSSESNKLFAVENPNNNDHFDIYWGAGGIDKPQINI 279

Query: 174 NDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            D I              ++ +    L +++  + +ST   ++         G  L    
Sbjct: 280 TDKIIGGAIYGEIKTRDSYIGKYTAQLDELASSLIVSTNQLHSI--------GQGLKRFD 331

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
               N   +N     +E+   F     ++              +    D  V   ++ L+
Sbjct: 332 QITSNNGVINPSYKFNENTGKF--NYPINKGTFRIALYNSENQVENYYDIDVDPEKDSLN 389

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +   +  +  +       +       I   + D      +  +    V     S     
Sbjct: 390 SIILKISSADGDPSGGKIQAFLSENNTIKITVADGYTFTFKEDTSNFLVASGLNSFFKGT 449

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                     + N               +    N        ++ NVT+ E+    +  +
Sbjct: 450 SAKDIDLSSLVKNDSGFIATSLTGEPGDNQNALNISNIKYKPLSNNVTIDEFYTTFVSLI 509

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +++     +   + V   +        GV++ EE + +IK +++Y  + + I   D+M
Sbjct: 510 GSDKAQVDTFYDTKKNVVQELKLKLDQIQGVSMDEEYTNMIKFQKAYEANARFITAVDQM 569

Query: 472 LQTLLEG 478
           +  L+ G
Sbjct: 570 IDKLING 576


>gi|47095271|ref|ZP_00232882.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254900059|ref|ZP_05259983.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           J0161]
 gi|254911388|ref|ZP_05261400.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935715|ref|ZP_05267412.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           F6900]
 gi|47016342|gb|EAL07264.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258608298|gb|EEW20906.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           F6900]
 gi|293589325|gb|EFF97659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 506

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 155/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GI---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G             Y ++ +             W +            +    + +    
Sbjct: 357 GGVDHPVDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVISADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           + ++ES S+  GVN+ EE++
Sbjct: 417 KTDKSIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|291617026|ref|YP_003519768.1| FlgK [Pantoea ananatis LMG 20103]
 gi|291152056|gb|ADD76640.1| FlgK [Pantoea ananatis LMG 20103]
          Length = 546

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/548 (13%), Positives = 165/548 (30%), Gaps = 75/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A    ++   NI N     Y R+ T+   +             V V
Sbjct: 1   MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTILAEANSTLQGKSYYGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E  +     L   S+          +  +  +         + +  I     +++
Sbjct: 61  TGVQREYDSFIAAQLRGSSATYNAAN--TQYSQVSNIDDLMSTSTTNLSTAIQGFFSNMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N ++    ++++ N++ +V  F T A+ +  ++   +  I   +  +  F ++++ 
Sbjct: 119 NVVSNANDPAARQSMLSNSQGLVNQFQTQAQYLTNMQNSVNTNIASNVDQINTFTTQISN 178

Query: 173 VNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    TA+    +D LDQRD L+  ++ I+G++   + +    V  ++G +L    
Sbjct: 179 LNQQIAKLSTANGATPNDLLDQRDQLVNGLNNIVGVTVS-QQDGSYTVSMANGLSLVNGF 237

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S  +T  +               S++  G +  +L  R   + + QNQL 
Sbjct: 238 QSTKLVAMPSSSDLTRTTVGYVDPQAGNVQLPESSITTGSLGGMLNFRSQDLDLAQNQLG 297

Query: 292 EMARVLIGSFSEKDPIAGNSE----------NVPGLFIADGIKDLDNKLCQGISETICVN 341
           ++A     SF+       +S             P                   + +    
Sbjct: 298 QLAAAFTTSFNAVHKQGFDSNGNQGVDFFNIGTPTAQGDSKNTSSATLTAAWTNTSALQA 357

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-------- 393
             Y  +        +                 +     D  +      P A         
Sbjct: 358 SNYTVSYDGTNWSATRLSDNSKTTLTPTTSGGVTTLNLDGMSLTVNGTPNAKDSFLVKPV 417

Query: 394 -------------------------------------------INTNVTLLEYARNSIGW 410
                                                      +N N T+ +     +  
Sbjct: 418 QNVVNGMSVAITSGSQIAAAAATGGESDNRNAQKLLALQDAKIVNGNATISQAYGAMVST 477

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +              Q V   ++    +  GVNL EE + L K +Q Y  + +++     
Sbjct: 478 VGNKTQALKTASTTQQNVVTQLTNRQQSVSGVNLDEEYANLTKYQQYYMANAQVLKTAST 537

Query: 471 MLQTLLEG 478
           +   LL  
Sbjct: 538 VFDALLSI 545


>gi|224498787|ref|ZP_03667136.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           Finland 1988]
 gi|254829362|ref|ZP_05234049.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           N3-165]
 gi|254830304|ref|ZP_05234959.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           10403S]
 gi|284801035|ref|YP_003412900.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           08-5578]
 gi|284994177|ref|YP_003415945.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           08-5923]
 gi|258601775|gb|EEW15100.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           N3-165]
 gi|284056597|gb|ADB67538.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           08-5578]
 gi|284059644|gb|ADB70583.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           08-5923]
          Length = 506

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 154/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GI---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G             Y ++ +             W +            +      +    
Sbjct: 357 GGVDHPVDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           + ++ES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|229195951|ref|ZP_04322704.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1293]
 gi|228587510|gb|EEK45575.1| Flagellar hook-associated protein FlgK [Bacillus cereus m1293]
          Length = 420

 Score =  150 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/479 (12%), Positives = 144/479 (30%), Gaps = 71/479 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61
              A     +  +N+ N     YVR+                      V  +        
Sbjct: 1   MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQTLGVDRITDE 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +  K  +   S +       S  +  E M      N S +  +    ++    +KN  + 
Sbjct: 61  VKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPDQS 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               T+I    +     N  A+ +  + A   ++IE  ++   R    L   N  I    
Sbjct: 120 NYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEANQKI--GQ 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A     +  LD+RD ++ ++S+ + I     + N  +        L              
Sbjct: 178 AGTQVPNQLLDERDRIVTEMSKYVNIEVSYESMNPNIASVRMNGVL----------TVNG 227

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T   + N       V        +  G IK+ +  +   +  ++  L+E+   +    
Sbjct: 228 QDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKKNLEELMGSVKNQV 286

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +                         +      ++ + +NP++ ++ S ++     + K 
Sbjct: 287 NTVM--------------------GKDFFVGDYAKELKLNPEFANDFSKMKISAETANKL 326

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                                               ++  +     I  +  ++S+ +  
Sbjct: 327 AGITDEDYKDG-------------------------LSYKKALDQFIVKVASDKSEVNGY 361

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +   I +   +  GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 362 QKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420


>gi|116328901|ref|YP_798621.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330492|ref|YP_800210.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121645|gb|ABJ79688.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124181|gb|ABJ75452.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 464

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/492 (7%), Positives = 108/492 (21%), Gaps = 42/492 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           ++       +   N   +   I  NI N +   +                          
Sbjct: 1   MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +          ++             E        +            
Sbjct: 61  GVNPQQVGLGSLIAAIDKIMTQGSLQTTGKNTDVAMSGEGFFIVKDGDKQFYTRAGAFNL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +  +  +      ++    F  S+  ++ I      +     +     +  
Sbjct: 121 DKNGYYVNPANGLKVQGWNARLDDKGNKFINSSASIEDIIIPVYSKEPARAT---SQIDF 177

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDV-LLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            + +N +                  D     +   +  I T                   
Sbjct: 178 KSNLNSSAPAVPPDATQEEITAMINDPDPKMRRGHVTTIKTFDDQGIQREFKMEFYKVRD 237

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            T    ++       +            +  ++                  D  +    +
Sbjct: 238 NTWKARLSMTDATQLSADVSGTGGQNTQLPGNTELEFGFTP----------DGKLVYVSD 287

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +D M    + +          +     L + +             +  +    Q+ S+ 
Sbjct: 288 GVDSMNSGKLNAKVSFRIAGNPAVQSFDLNLGE-------------AGMVDGITQFSSDF 334

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +                 ++     +   + +   +       A  N    L +      
Sbjct: 335 TTKAVKQDGYTMGYLESFSIDNSGTITGVFSNGVRQPLARIATAVFNNPAGLDKAGDTMF 394

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +     S   ++          I+        V+L ++ + +I  ++ +  +++ I  +
Sbjct: 395 AY--SMNSGEPNIGEAGVQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTITTS 452

Query: 469 DKMLQTLLEGVK 480
           D+M+Q +L   +
Sbjct: 453 DQMIQEVLGLKR 464


>gi|134095091|ref|YP_001100166.1| flagellar hook-associated protein FlgK [Herminiimonas
           arsenicoxydans]
 gi|133738994|emb|CAL62042.1| putative flagellar hook-associated protein 1 FlgK-like
           [Herminiimonas arsenicoxydans]
          Length = 659

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/407 (14%), Positives = 132/407 (32%), Gaps = 15/407 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52
           +  + + A++    A    A+   NI N     Y R+  +                   V
Sbjct: 1   MSNLLSIAKSGLAAAHAGIATTGHNIANQATPGYSRQLVIQASLGGQNIGGGYIGNGTNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T R    +     + +  S+  Q             M AD   +   +  I+     ++
Sbjct: 61  ETVRRIYNDFLGAQVVSAQSSKSQLDTYYMQINKVNNMLADP--SVGLSPVIADFFKGIQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N       + ++  AE +V  F +   ++  +R   + EI   ++N+  +  ++  
Sbjct: 119 DLVANPGIAPSRQAMLSGAEALVARFQSLDGQLTGMRNGVNSEIAGAVTNINAYAKQIGQ 178

Query: 173 VNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +NDAI      S    +D LDQRD+L+ ++++   ++ + + + +  V+  +G  L   +
Sbjct: 179 LNDAISKAQNGSGQPPNDLLDQRDLLIGELAKQSKVTLV-QQDGNYNVFIGNGQPLVVGL 237

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S            +G  V     S++  G +  L + R   +   QN L 
Sbjct: 238 STYELTAVPSSTDPGRMQVGYIANGKTV-ILPESSLTGGNLGGLFEYRSKTLDPIQNSLG 296

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L  +F+E+  +  +     G    +      +   +              +    
Sbjct: 297 RIALGLASTFNEQHRLGQDQNGKFGGDFFNMATPQISSSKENTGNAKIDATINSVDKLTT 356

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V  L+    +     D        D ++      
Sbjct: 357 SDYRLSYDGSNYTVTRLSDNVAISASNMDFPATPIEMDGISFSMDTS 403



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/457 (9%), Positives = 116/457 (25%), Gaps = 22/457 (4%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            +   +      NV +   +     +    L A  S+    R+   + A  + +   +  
Sbjct: 212 SKVTLVQQDGNYNVFIGNGQPLVVGLSTYELTAVPSSTDPGRMQVGYIANGKTVILPESS 271

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                +         ++   +  ++ LG+  +  A    +       +  K   D     
Sbjct: 272 LTG-GNLGGLFEYRSKTL--DPIQNSLGRIALGLASTFNEQHRLGQDQNGKFGGDFFNMA 328

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             +IS+ +       +          +  D     D  +  + ++S+ + IS    +   
Sbjct: 329 TPQISSSKENTGNAKIDATINSVDKLTTSDYRLSYDGSNYTVTRLSDNVAISASNMDFPA 388

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP-------------IFIDGVVVSSNQ 263
             +     +   +T          + + +    N              I     + ++  
Sbjct: 389 TPIEMDGISFSMDTSVGAGTMAAGDEFIIKPTINGASGLSVLIKDIKQIAAGTPIRTNAP 448

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
            +    G I A                 ++      +     P   +     G       
Sbjct: 449 IANTGTGAISAGTINAGFDAVTAAALPVDLIYDAAANTFSGFPAGMDVTVNVGGTKTVYP 508

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
             L             +     +               +    N  G    +    +   
Sbjct: 509 AALPPAETTVPYTAGAIVSFGGAEIKISGTPADGDTFSISANTNGDGDNRNMLLLGELQT 568

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           KN +           +        +  +     +     +    +   +  +  +  GVN
Sbjct: 569 KNVLQ------GGTASYNSAYSQLVSQVGNKTRELETNSLAEGALLKQMQTAQQSESGVN 622

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L EE + L++ +Q+Y  S K++     M   L+   +
Sbjct: 623 LDEEATNLLRYQQAYQASGKVMQAVSDMFDVLISLGR 659


>gi|187934928|ref|YP_001885009.1| flagellar hook-associated protein FlgK [Clostridium botulinum B
           str. Eklund 17B]
 gi|187723081|gb|ACD24302.1| flagellar hook-associated protein FlgK [Clostridium botulinum B
           str. Eklund 17B]
          Length = 604

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/422 (11%), Positives = 119/422 (28%), Gaps = 20/422 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L   F  A+   N       +   NI NA+   + R+  + T +               
Sbjct: 3   GLFDTFTVAKRGLNVQQGAINTTSHNIANANTVGFSRQRAVATTTRPFGGMSRFDTCTVG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  + +      +  D  +   +  +G   +   F    E +   +  ++     +
Sbjct: 63  QVGTGAEISSIERIRDSFIDFQVRHENGKLGNYDVQDKFLYRVENIFG-EPSDSGIQQLL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +  DS +  SK   +       +  A  +    N +  ++ K  +DA + +++ + ++ 
Sbjct: 122 GEFFDSFQELSKKPHDSSTKTIALQKASALADALNNTYTQLDKQLSDAQELLQVNVKDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +L ++  +N  I    A     +D +D RD LL ++S   GI+   +    + +     
Sbjct: 182 NYLDQINELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKESIDLKLEGY 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                 V   +N    +                  +      +    +  L    +++  
Sbjct: 242 QNGKNPVNNLVNSSPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGNLNAKEETITI 301

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              ++  + A+ +  S ++   + G+ + + G  I        +                
Sbjct: 302 ECADE--DEAKKIAESLTQNRVLMGDKDGIVGKPIPPATTVTMSSDDINKKILQTHKLDV 359

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             N    +               + GY   ++                            
Sbjct: 360 DVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTPTDKYELVF 419

Query: 405 RN 406
            N
Sbjct: 420 TN 421



 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/432 (10%), Positives = 121/432 (28%), Gaps = 4/432 (0%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V    +      +++    +S     +        ++ +          T    +   
Sbjct: 175 VNVKDVNNYLDQ-INELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKES 233

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                    +       +++       +  T    V+    + D   +  +      L  
Sbjct: 234 IDLKLEGYQNGKNPVNNLVN--SSPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGN 291

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L    + I  + A + +A    +        + +  GI          V  +SD      
Sbjct: 292 LNAKEETITIECADEDEAKKIAESLTQNRVLMGDKDGIVGKPIPPATTVTMSSDDINKKI 351

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++ +         + +     GV  +     A        L    +++    Q  
Sbjct: 352 LQTHKLDVDVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTP 411

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            D+   V                      I+     ++  + + +S     +       +
Sbjct: 412 TDKYELVFTNGADVTGLTGVAKNEKLEEKISAKNITVNKDVLKDVSLLNTSSKDEAGEGN 471

Query: 350 FLRDGGSVS-KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             R     +      N+ N     +  + + ++         +       T+  Y +  I
Sbjct: 472 GDRALAIANLINVKMNLTNSKDIKNRNDFFANTKVNFDDGINMISSAEGSTINAYYKEII 531

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             L  +   +         +   +     +  GV+L EE++ LI+ + +Y+ + K++   
Sbjct: 532 NTLGVSAETASRNVTSQTKILKDLEMQKLSVSGVSLDEEMTNLIQFQHAYSANAKVVSTV 591

Query: 469 DKMLQTLLEGVK 480
           D++L  ++ G+K
Sbjct: 592 DELLDVVINGLK 603


>gi|24215548|ref|NP_713029.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657072|ref|YP_001158.1| flagellar hook protein FlgE [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196693|gb|AAN50047.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600309|gb|AAS69795.1| FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 464

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 37/492 (7%), Positives = 110/492 (22%), Gaps = 42/492 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           ++       +   N   +   I  NI N +   +                          
Sbjct: 1   MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +          ++             E        +            
Sbjct: 61  GVNPQQVGLGSLIAAIDKIMTQGSLQTTGKNTDVAISGEGFFIVKDGDKQFYTRAGAFNL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +  +  +      ++    +  SA  ++ I      +     +     +  
Sbjct: 121 DKNGYYVNPANGLKVQGWNSRLDDKGNKYINSAASIEDIIIPVYSKEPARAT---SQIDF 177

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDV-LLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            + +N +                  D     +   +  I+T                   
Sbjct: 178 KSNLNSSAPAVPPDATQEEITAMINDPDPKMRRGHVTTINTFDDQGIQREFKMEFYKVRD 237

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            T    ++       +V           +  ++                  D  +    +
Sbjct: 238 NTWKARLSMTDSTQLSVDVSGTGGQNTQLPGNTELEFGFTP----------DGKLVYVSD 287

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +D M    + +          +     L + +             +  +    Q+ S+ 
Sbjct: 288 GVDSMNSGKLNAKVSFRIPGNPAIQNFDLNLGE-------------AGMVNGITQFSSDF 334

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +                 ++     +   + +   +       A  N    L +      
Sbjct: 335 TTKAVKQDGYTMGYLESFSIDNSGTITGVFSNGVRQPLARVATAVFNNPAGLDKAGDTMF 394

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +     S   ++          I+        V+L ++ + +I  ++ +  +++ I  +
Sbjct: 395 SY--SMNSGEPNIGEAGVQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTITTS 452

Query: 469 DKMLQTLLEGVK 480
           D+M+Q +L   +
Sbjct: 453 DQMIQEVLGLKR 464


>gi|51598442|ref|YP_072630.1| flagellar hook-associated protein FlgK [Borrelia garinii PBi]
 gi|51573013|gb|AAU07038.1| flagellar hook-associated protein [Borrelia garinii PBi]
          Length = 627

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 141/457 (30%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIVEESHRLGYWTSQDKFISMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S +  +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCELIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +I +S   + + +  +  S+G
Sbjct: 182 NYIKNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQDPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    ++ N  + +    +         GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTKWNIFWANNDKANLET------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L ++  +  +         
Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFSQELKLTDERGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGILKFEATNSNEIIEIPYNAPDTVQDLITRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSG 447



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 114/372 (30%), Gaps = 14/372 (3%)

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +     K  I  A     N  T   ++  +    D+EI+ EI+ L    + +  + + I
Sbjct: 258 TNGPTRTKWNIFWANNDKANLET--GKLGSLLNIRDEEIKNEINELNNLAANIIELVNEI 315

Query: 178 KFKTASK---------HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
                                  D+R       +       I + N+   ++      L 
Sbjct: 316 HETGHGMDKKSGRSFFSQELKLTDERGRYDTNGNGQFDSVHIFKINSTNEIFPE--EKLG 373

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                       N       + P  +  ++   N  +A    +I +  +     V   +N
Sbjct: 374 FYGILKFEATNSNEIIEIPYNAPDTVQDLITRINNSNAQVTARINSEGKFEIKAVKEQEN 433

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +        I              N  G   A   +++D         T  ++P      
Sbjct: 434 ENITFRIKHIEDSGLFLTKYTGILNESGPEGAYDYRNIDTIDKLTPKSTYSISPLKNPAA 493

Query: 349 S-FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              + D   +    +    N       I     +   +   +    I  N+TL +Y  N+
Sbjct: 494 WIKVADIIDLDPSKIAAGINSPTNEISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANT 553

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      S         +   +++   +  GVN  EEL+ +I+ +Q++  ++K I  
Sbjct: 554 ASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITV 613

Query: 468 TDKMLQTLLEGV 479
           + +++ T++  +
Sbjct: 614 SAELIDTIINKM 625


>gi|188589591|ref|YP_001920169.1| flagellar hook-associated protein FlgK [Clostridium botulinum E3
           str. Alaska E43]
 gi|251779172|ref|ZP_04822092.1| flagellar hook-associated protein FlgK [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|188499872|gb|ACD53008.1| flagellar hook-associated protein FlgK [Clostridium botulinum E3
           str. Alaska E43]
 gi|243083487|gb|EES49377.1| flagellar hook-associated protein FlgK [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 604

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/422 (11%), Positives = 119/422 (28%), Gaps = 20/422 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L   F  A+   N       +   NI NA+   + R+  + T +               
Sbjct: 3   GLFDTFTVAKRGLNVQQGAINTTSHNIANANTVGFSRQRAVATTTRPFGGMSRFDTCTVG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  + +      +  D  +   +  +G   +   F    E +   +  ++     +
Sbjct: 63  QVGTGAEISSIERIRDSFIDFQVRHENGKLGNYDVQDKFLYRVENIFG-EPSDSGIQQLL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +  DS +  SK   +       +  A  +    N +  ++ K  +DA + +++ + ++ 
Sbjct: 122 GEFFDSFQELSKKPHDSSTKTIALQKASALADALNNTYTQLDKQLSDAQELLQVNVKDVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +L ++  +N  I    A     +D +D RD LL ++S   GI+   +    + +     
Sbjct: 182 NYLDQINELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKESIDLKLEGY 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                 V   +N    +                  +      +    +  L    +++  
Sbjct: 242 QNGKNPVNNLVNSNPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGNLNAKEETITI 301

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              ++  + A+ +  S ++   + G+ + + G  +        +                
Sbjct: 302 ECADE--DEAKKIAESLTQNRVLMGDKDGIVGKPVPPATTVTMSSDDINKKILQTHKLDV 359

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             N    +               + GY   ++                            
Sbjct: 360 DVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTPTDKYELIF 419

Query: 405 RN 406
            N
Sbjct: 420 TN 421



 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/432 (10%), Positives = 121/432 (28%), Gaps = 4/432 (0%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V    +      +++    +S     +        ++ +          T    +   
Sbjct: 175 VNVKDVNNYLDQ-INELNKQIASVCAVGQTPNDLMDARDNLLDQLSSKFGITIDRKEKES 233

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                    +       +++       +  T    V+    + D   +  +      L  
Sbjct: 234 IDLKLEGYQNGKNPVNNLVN--SNPTDDKYTRFSYVKNAEVEKDAAGKYTVKLQYHPLGN 291

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L    + I  + A + +A    +        + +  GI          V  +SD      
Sbjct: 292 LNAKEETITIECADEDEAKKIAESLTQNRVLMGDKDGIVGKPVPPATTVTMSSDDINKKI 351

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++ +         + +     GV  +     A        L    +++    Q  
Sbjct: 352 LQTHKLDVDVNTVDNKHIKGDIAGNQGVQDTIKGYMADLDRIAVGLAYAVNAIQTGSQTP 411

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            D+   +                      I+     ++  + + +S     +       +
Sbjct: 412 TDKYELIFTNGADVTGLTGVAKNEKLEEKISAKNITVNKDVLKDVSLLNTSSKDEAGEGN 471

Query: 350 FLRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             R     +      N+ N     +  + + ++         +       T+  Y +  I
Sbjct: 472 GDRALAIANLRNVKMNLTNSKDIKNRNDFFANTKVNFDDGINMISSAEGSTINAYYKEII 531

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             L  +   +         +   +     +  GV+L EE++ LI+ + +Y+ + K+I   
Sbjct: 532 NTLGVSAETASRNVTSQTKILKDLEMQRLSVSGVSLDEEMTNLIQFQHAYSANAKVISTV 591

Query: 469 DKMLQTLLEGVK 480
           D++L  ++ G+K
Sbjct: 592 DELLDVVINGLK 603


>gi|213024454|ref|ZP_03338901.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 403

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 128/387 (33%), Gaps = 14/387 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 12  MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 71

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   +   +  +     SL+
Sbjct: 72  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQ 129

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  
Sbjct: 130 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIAN 189

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL + 
Sbjct: 190 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQG 249

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   T  +     +           +  G +  LL  R   +   +N L
Sbjct: 250 STARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTL 309

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +++   G         +         +T+ +  +   +   
Sbjct: 310 GQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKV 369

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINH 377
                 +                    
Sbjct: 370 QATDYKIVFDGTDWQVTRTADNTTFTA 396


>gi|51894116|ref|YP_076807.1| flagellar hook-associated protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857805|dbj|BAD41963.1| flagellar hook-associated protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 558

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 61/442 (13%), Positives = 142/442 (32%), Gaps = 16/442 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
            + + F  A     ++       + NI NA++ NY RR     + P    +         
Sbjct: 4   GISSGFYTATRALQSSQWAMHLHLENIANANDPNYTRRTLENRVDPFG-RLPEVVRMRDL 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             D       S+ G   +     A  E +   D         I +  D+ ++ S++ +++
Sbjct: 63  FIDFQYRRAQSSAGYASIRADLMARVEDIFG-DPIEGGLAQAIDRFFDAFKAVSEDPADE 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +L    I+     VQ+ + +  ++  I++  +++I+  ++ +   L  L  +N  I    
Sbjct: 122 VLRIEAIEAGRRFVQHIHEAMSQLTLIKSQINEKIQGAVTEINAHLENLRNLNSRIATMV 181

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            S   A D +DQRD +L +++ + G       +  + V         +    ++      
Sbjct: 182 GSSEMAADLMDQRDRVLDELARLTGARVTYLEDGTVRVMI-GSVPAVDGTAINLLEVVEG 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
               T +     +               G + ALL++RD  +     ++D++A+ +    
Sbjct: 241 ENGPTVKWQGFNLPAYS---------GHGVLSALLEMRDGDLQHVIAEVDKLAKNVAREV 291

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +       + +   G        D+   +      T         +   L+  G+++ + 
Sbjct: 292 NYWHRQGYDLDGHEGGDFFLIQDDVPGGVYVHPDLTPRKIAA-AGDEQALQMDGTIADRI 350

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +         + D            G + +V  +                    
Sbjct: 351 YQLSYGMWPQYAGEYTWTDPDGPAIEKTLTLGKDLSVKFVHTY--LDSETGNYV-TVEQR 407

Query: 422 HMKSQVVFNHISESYSNTVGVN 443
               Q V   I+ + +    V+
Sbjct: 408 GTWYQNVDGSITITLTEEKTVD 429


>gi|226225729|ref|YP_002759835.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27]
 gi|226088920|dbj|BAH37365.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27]
          Length = 506

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 41/508 (8%), Positives = 119/508 (23%), Gaps = 32/508 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   N   +   I  NI N +   +             +     R      
Sbjct: 1   MLRSLYAGVSGLRNNQVRMDVIGNNIANVNTVAFKAGRVTFKEGFAQLLAGASRPPGDQG 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
               +               +   +    L        +        N S        + 
Sbjct: 61  GINPIQIGLGMQIGSIDQIFNQGNLETTGLNTDIAIQGDSFFVVRKGNQSFYTRAGNFQV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  + +   + +  +    ++            +  +           NL      
Sbjct: 121 DALGQLVSPANGFIVQGRMYENGQLQDGIQDIRLPFGQKVSANPTTDMKLAGNLNASAPV 180

Query: 170 LTVVNDAIK------FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                +          + A         D +        ++        +     + ++ 
Sbjct: 181 FQGDFNDPMDRALPINEKAWTETQIGVFDSQGTKHDVKLQMWKTGPNSWDWRIDPIASAQ 240

Query: 224 GTTLFETVPRDINFEKMNSYTVTSE----------SNPIFIDGVVVSSNQGSAVPKGKIK 273
              +        +   + +     E          +  +  +     S      P  +  
Sbjct: 241 TFEVETDGNSPPSDIPLPTPPAGYEVLPDNVRVYSATGVEYNNPADYSFSAGPPPAVQFT 300

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
           A + +   +   +    D             D     + N+              ++   
Sbjct: 301 ANMPVNSQIKIGYFMSPDSATPSENSGTFTFDNAGLLNTNISASLNFAVPGANPVRIDLT 360

Query: 334 ISETICVNPQYRS-NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
           +   +    Q+ S + + +    +          ++  +  +   + +          +A
Sbjct: 361 LGGGVNGLTQFASTSSTAVLRDQNGYTAGTLQNFSIDRFGLITGFFTNGTTSPLARIVLA 420

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
             N    LL    N   + E   S    L    +   + ++        V+L +E + +I
Sbjct: 421 DFNNPSGLLRIGDNM--YQESANSGGAVLGFALEGSQSQMTSGALEMSNVDLAQEFTNMI 478

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  + K++  +D+MLQ L+   +
Sbjct: 479 VAQRGFQANGKVVSTSDEMLQELMTIKR 506


>gi|229160702|ref|ZP_04288694.1| Flagellar hook-associated protein FlgK [Bacillus cereus R309803]
 gi|228622717|gb|EEK79551.1| Flagellar hook-associated protein FlgK [Bacillus cereus R309803]
          Length = 432

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 147/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNIASAGASNGHMPAQRIGN 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQYNDQLSQFSYYAYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +        ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTSQVNRLAKNLATAEIQTTEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +V       L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIVTEMSKYADIEVSYESMNPNIVSVRMNGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKEKEPMSVEIYGSEIPLTSGAIQSAIDTKAK-IAGYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L++    +    +                         +      ++ + +NP++  + 
Sbjct: 286 NLEDFMSSVKTQVNTVM--------------------GKDFFVGDYAQEMKLNPEFAQDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     +T  +     I
Sbjct: 326 SKMKISAETANKLAGITDGNYKEG-------------------------LTYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  ++S  +        + + I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKSAVNAYQSIHGDLLDGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAINTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|126668564|ref|ZP_01739518.1| flagellar hook-associated protein [Marinobacter sp. ELB17]
 gi|126626969|gb|EAZ97612.1| flagellar hook-associated protein [Marinobacter sp. ELB17]
          Length = 668

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 123/371 (33%), Gaps = 16/371 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52
           +  +     +    +     +   NI NA+   Y R+D                   V V
Sbjct: 1   MAGLLGIGLSGILGSQAALNTTANNITNANTPGYSRQDVQFGAQTPQRTGAGSIGTGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R        + +   SS  G+QR L +  +  + +   +  +   +  ++    SL+
Sbjct: 61  ENIRRLANEYLTQQIREDSSLEGEQRTLNNELSRLDNLLGGE--STGLSKALNNFFASLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     + VI   ++VV  F+    +  + R     +++    +    ++ +  
Sbjct: 119 NAAEDPTSLPQRQLVISEGQQVVNRFSALNEKFIQQRESVKTQMQQGAKDANGLIASIAD 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N AI      A     +D LDQRD  L+++SE++ I         + V  ++G  L   
Sbjct: 179 LNSAISQSPGLAQGRMPNDLLDQRDERLRQLSELVSIKISPTEGAQVNVTLNNGQGLVIG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   + ++           +       N  S +  GK+  L   +   +    ++L
Sbjct: 239 NIAAELSTRPSASDP--LMLEFTLGTSGRVVNIDSQIEGGKLGGLRYFQQQALAPAFDEL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  L  S + +  I  + E   G            +  + +       P        
Sbjct: 297 GRIAIALADSMNSQHQIGMDLEGELGGLFFKDFNSSALQASRVVPNANNQTPGNTQLAVE 356

Query: 351 LRDGGSVSKKF 361
           + D   ++   
Sbjct: 357 ITDSSMLAAGT 367



 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 97/367 (26%), Gaps = 8/367 (2%)

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L  ++    +  +           K    +  +    + N        T +   I   +
Sbjct: 302 ALADSMNSQHQIGMDLEGELGGLFFKDFNSSALQASRVVPNANNQTPGNTQLAVEITDSS 361

Query: 182 ASKHDAHDFLDQRDVLLQKISEII------GISTIVRNNNDMVVYT-SDGTTLFETVPRD 234
                  D         + ++E          S               DG  L       
Sbjct: 362 MLAAGTWDLKLGAGDTYELVNERTGSVVNGNFSVTEDEIVMPGFTIRYDGGALNAGDRFQ 421

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           I   +  +  +  E                S        A+ Q     V          A
Sbjct: 422 IQPTRNGAADIAMEVRREEDLAFASPVRAASREDNKGTGAISQGTMLAVRDPDTDALLPA 481

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  S    +    +   GL         +            +  +  S+PS+    
Sbjct: 482 FSLTGLVSSSTTVTFGEDASGGLTYTINSGGANIVTDASYVAGENLFSEVASDPSYQGFQ 541

Query: 355 GSVSKKF-LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            +V+ +  + ++ ++    + ++   ++             N + +  E     +  +  
Sbjct: 542 FNVTGQPKVGDIFDIEFNTNGVSDNRNAEFLASFGTKNRLNNGSQSFAEGYAGLVENVGV 601

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               S       + +    S    +  GVNL +E   LI+ + +YN S K+I     +  
Sbjct: 602 QTRQSQLDLEAGKTLLEQSSNQRESVSGVNLDQEAGKLIQYQAAYNASAKVITVAQDLFN 661

Query: 474 TLLEGVK 480
           TLL+  +
Sbjct: 662 TLLQTFR 668


>gi|332298485|ref|YP_004440407.1| flagellar hook-associated protein FlgK [Treponema brennaborense DSM
           12168]
 gi|332181588|gb|AEE17276.1| flagellar hook-associated protein FlgK [Treponema brennaborense DSM
           12168]
          Length = 629

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 119/352 (33%), Gaps = 25/352 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S  A     +      SQ  ++   NI NA  + Y R+                      
Sbjct: 3   SSFAGIEMGKRSLMAQSQSISTAGHNISNASTEGYSRQRVQLRQFDPIYRPDLSRAETAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + VT  +       + D  + A S+        + +  + E +  ++  + S    +
Sbjct: 63  QIGQGVTAESISRVRDELLDSRITAQSNQESYWSTREKYYVMLEQIY-NEPNDVSIRSNM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                S +  S         ++++  A  +  +       +  I    + +IE  +  + 
Sbjct: 122 DMFWQSWQELSLYPESQAARQSIVTRAGSLTNSIQQRFNSLSGIGTLLNGDIEATVDQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +  ++  +N  I    A   + +D LD+RD+++ K+S ++ I+T  R+ ++ +V+    
Sbjct: 182 DYARQIAALNSEIVRSRAMGDNPNDLLDRRDLMVDKLSSLVNITTDQRDPDEFMVHIDGR 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +     R  +   +         N  +   V   +   +A+  G + AL+++RDS V 
Sbjct: 242 VLVQGNSARSFDVIPLTD-------NDGYSKVVWSDTGNDAAISGGSLGALIELRDSDVR 294

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                L+ M        ++    A  +    GL        + N        
Sbjct: 295 SELQNLNTMTMNFADLVNDVHRNAIGANGTTGLDFFTQQPFVTNTAGNYDRN 346



 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 107/419 (25%), Gaps = 4/419 (0%)

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
              M DK+    +    Q+   +    +   +    +   S         D       + 
Sbjct: 211 RDLMVDKLSSLVNITTDQRDPDEFMVHIDGRVLVQGNSARSFDVIPLTDNDGYSKVVWSD 270

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           + +    +       +    +    E+Q +        +L     R  +           
Sbjct: 271 TGNDAAISGGSLGALIELRDSDVRSELQNLNTMTMNFADLVNDVHRNAIGANGTTGLDFF 330

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            +     +     D+        S I  IS     +    +      TL           
Sbjct: 331 TQQPFVTNTAGNYDRNGDGEADTSYIFRISGTNALDPQEQIGLRGSITLSGK---TGTVS 387

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
                T T E+    I+                +      +    P F  +  E +   +
Sbjct: 388 VPYYPTDTVEAVVSRINDSDGEVKAYLDRNGNLVLKATTAQAQENPDFVIRHVEDSSHFL 447

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
             ++     +G                       G    +       +  +         
Sbjct: 448 AGYAGILQGSGPENAYDFARPDSVDVLNGAGTGGGAQYAVSPVLNPSAYIAVNPAITGDV 507

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +    +GY +  +    +     I +    I    TL +Y   S+  +      +
Sbjct: 508 LSVASSFPGASGYGENGDG-RAASAIAAIRNSNVMIGRYRTLDDYFAESVTNVALKGEQA 566

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
               +    +   +     +  GVN+ EEL+ +IK +  YN + K I   D++L T++ 
Sbjct: 567 EINMLSQNSILADLRTLRDSISGVNVDEELADIIKFQHGYNAAAKFITVMDELLDTVIN 625


>gi|296126646|ref|YP_003633898.1| flagellar hook-associated protein FlgK [Brachyspira murdochii DSM
           12563]
 gi|296018462|gb|ADG71699.1| flagellar hook-associated protein FlgK [Brachyspira murdochii DSM
           12563]
          Length = 637

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 134/429 (31%), Gaps = 35/429 (8%)

Query: 1   MSLLAVFNK--AQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------- 43
           MS  + F     +    N          NI N   K Y R+  +                
Sbjct: 1   MSTSSFFGIELGKRSLQNFKTALEVTGHNINNVATKGYSRQRVVMRTFDKPLEAPSLNRA 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                  +   + T         D  +       G  +    +    E +  ++  N + 
Sbjct: 61  ERAGQIGQGAEITTVERIRDQFIDSKIMMELGTDGYWKTKSDYLKQLEAIY-NEPGNANL 119

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
              +    DS +  + N SE      +++ A+ V  + N    ++  +R + +  +E +I
Sbjct: 120 RSDLDAFWDSWQEMAANPSERGTRMVLVERADRVNNSINQMFNQMNGMRNNLNNLVESKI 179

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           + +    + +  +N  I  + A     +D LD+RD+L+ ++S +  +     + ++ +VY
Sbjct: 180 NRINDISNSIKDLNVEIVKQQALGQSPNDLLDRRDLLIDELSSLANVDIKSMDPDETIVY 239

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                 +   V  +++ EK       + +N    D      +       G++KALL++RD
Sbjct: 240 IGGRALIQGNVVSELSAEK-------NINNEGMYDIYWKKDHVQVQFEGGELKALLELRD 292

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK-------DLDNKLCQG 333
                  N +D  A  L  S +E            G+      K       + D+     
Sbjct: 293 VDTVDAINDIDTFAMNLADSVNEVHRSGFGLNQETGIDFFTMTKAAPSVIGNFDSNNDGQ 352

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
              TI       ++       GS       N         +                 + 
Sbjct: 353 EDSTIMFKVSGINSIDPTDSIGSSGTLIFGNKSREGADVAIDYTAQMKVGDLIDKINSSE 412

Query: 394 INTNVTLLE 402
            N +  L +
Sbjct: 413 ANVSAYLDD 421



 Score = 99.7 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 92/339 (27%), Gaps = 12/339 (3%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDA--IKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
            D D        ++         +N    I F T +K       +       +    I  
Sbjct: 300 NDIDTFAMNLADSVNEVHRSGFGLNQETGIDFFTMTKAAPSVIGNFDSNNDGQEDSTIMF 359

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
                N+ D         TL          +    YT   +   +        +N  + +
Sbjct: 360 KVSGINSIDPTDSIGSSGTLIFGNKSREGADVAIDYTAQMKVGDLIDKINSSEANVSAYL 419

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                  L          +      +  +              +++           D  
Sbjct: 420 DDNNKLVLKA---RAFDDYMRPSYFIKHIEDSGDFLVGITGVLNQSGANGAYNWQATDQV 476

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           N+L            ++ ++   + D       ++   K +    +  N   +       
Sbjct: 477 NQLAGDFRNFTTTPYRHPASAIAVNDIIRNDVNYIAASKGIDTTGNGFNDKWNGLGDGAN 536

Query: 388 FDPVAGINTN-------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
              +A +           T  ++   SI  +      ++    K  VV  ++     +  
Sbjct: 537 ALAIANLKNKEIMVESKSTFNDFYTGSIARIASRTETANAETEKQTVVMEYLERLRQSVS 596

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           GVNL EE++ +   +  YN S +++   D++L  ++  +
Sbjct: 597 GVNLDEEVAQMAMYQHGYNASARVVSIMDQLLDVVINRM 635


>gi|85859175|ref|YP_461377.1| flagellar hook protein [Syntrophus aciditrophicus SB]
 gi|85722266|gb|ABC77209.1| flagellar hook protein [Syntrophus aciditrophicus SB]
          Length = 518

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/516 (10%), Positives = 126/516 (24%), Gaps = 47/516 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPEN----VT 51
           +           N + +Q   I  N+ N+    Y   DT           S         
Sbjct: 12  MSNALWIGTTGLNASQRQMDIIGNNLANSSTLGYKSADTQFANMLSQSLTSGSGSFQVGQ 71

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            V   S N         +  S        + F  +K+   A                   
Sbjct: 72  GVAISSVNTKFDQGSFESTGSVTDMAIDGEGFFPVKDKEGAI------YYTRAGAFVIDK 125

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFN------------TSAREVQKIRADADKEIELE 159
           + Y  +++   +    + +A    +  +            T    +     D++      
Sbjct: 126 DGYLVDVNGYRVQGINLFSAPGDAELTDICLKNIQSAPSATKTFGIGVNLNDSEDAGTSF 185

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           + +   F S+  + N ++ F             + D +    S   GI      N     
Sbjct: 186 VVSQNVFDSKGAIHNLSLTFTKTEGDGYWGCQAKLDNVETINSSCCGIKFDESGNLKNTY 245

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA----- 274
            TS             +        +          G    +   S+     ++      
Sbjct: 246 LTSCSAGAVSGGGAITSTTVNKPGQLYLNGTIACTRGADADTWTISSSEYPNLEFSLGDL 305

Query: 275 ---------LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                    L     + + +              + S+ +  A +               
Sbjct: 306 GNDDEIAIDLDGKGGTDITLALGAGFADLSSFDLTISQVESNAADVTFEFPGLANGADIG 365

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             N L   +     +     +  S ++          +    ++     +   + +    
Sbjct: 366 SGNALTWNLIGDDALQVTGYAATSVIKALEVDGYTSGVLKSLSVEKDGIISGIFTNGQTS 425

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
           +     +A       L +         E N S +  ++         I  +       ++
Sbjct: 426 DLGQVVLANFPNVGALRKIGSYFA---ETNFSGAAIINSPGTGGLGEIMSNSLEQSNTDV 482

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             E   +I  +++Y  S ++I  +D+ML  L+   +
Sbjct: 483 SMEFVNMINAQRAYQASARIITTSDEMLTELMNIKR 518


>gi|146307863|ref|YP_001188328.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp]
 gi|145576064|gb|ABP85596.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp]
          Length = 681

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 127/379 (33%), Gaps = 14/379 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + N   +  + +    A    NI N +   + R++ + T                T+
Sbjct: 1   MADLLNIGLSGLSASKTSLAVTGHNIVNVNTPGFSRQEAVQTTRTPQFSGAGYIGSGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R       +  + + ++             + ++ S         T  + +L  +L+
Sbjct: 61  VDVRRIYNEFLNTQVRSSTALNS--DTQAYLSQINQLDSLLAGSTTGVTPGLQRLFAALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +++ +     +  +  AE + + FNT    + +  A  +K++      + +  + +  
Sbjct: 119 TAAEDPANIPARQLALSEAEGLSKRFNTIYDRLYEQNAFLNKQLSAVTDQINQLATSIAG 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D LD R+  ++K+SE IG++ + +++N   ++   G  L     
Sbjct: 179 FNDAIAVAASNGQAPNDLLDAREEAVRKLSEFIGVTVVPQDDNSYNLFIGSGQPLVVGSK 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                            + I            S +  G++  LL+ R  V+    N +  
Sbjct: 239 AARLEVTPGQSDPLR--SEIQFVSGSSRQGITSLITGGEMGGLLRYRQDVLDQSMNAVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  +    + +     +     G  +   I D      + ++     +       +   
Sbjct: 297 LALSIADQMNRQLGQGLDLNGQFGNELFRSINDPLLLSQRSLARVGNSDTTANLAVTLTD 356

Query: 353 DGGSVSKKFLWNVKNLAGY 371
                +  +     +   Y
Sbjct: 357 TSRLTTSDYEVQFTSATEY 375



 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/440 (9%), Positives = 113/440 (25%), Gaps = 22/440 (5%)

Query: 38  RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                 T       +       +++ D+ ++A    +      Q    L + +  +  + 
Sbjct: 262 SSRQGITSLITGGEMGGLLRYRQDVLDQSMNAV-GRLALSIADQMNRQLGQGLDLNGQFG 320

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           N     I+      +     +       T  + A  +      +  + +     A + + 
Sbjct: 321 NELFRSINDPLLLSQRSLARVGNS---DTTANLAVTLTDTSRLTTSDYEVQFTSATEYVV 377

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +S+    L   T     I    A + D                 ++  +     +   
Sbjct: 378 RRVSD--GTLFPPTPATFDITTVPAPEVDGFSLGVSSGTFAAGDRFLVMPTRNAGRDIRA 435

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
            +   +       +  + +   + +  +T       I+    ++             L  
Sbjct: 436 DMKNPEELAFAAPLKAETSPANIGTGRITQPRLLTEINIYDPAAQADLETSLRNAPPLRI 495

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +  +     Q+        ++                          +          + 
Sbjct: 496 VMGAGGGATQS------YDVVDINGNVIDTGSIVPGQDNALTITVPANPPAIPAAFDYQV 549

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                    +   +            N   ++   + +N            +P A   T 
Sbjct: 550 TISGRPQAGDNFSVSF----------NTNGVSDNRNALNLVNLQNKSVIGVNPGAPTTTG 599

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            +  +   + +  +    S +      +  +    +++  +  GVNL EE + LI+ EQ 
Sbjct: 600 SSFSDAYGDLVERVGTLTSQARVDGQATSAILKQATDNRDSISGVNLDEEAAKLIQFEQY 659

Query: 458 YNISNKLIMFTDKMLQTLLE 477
           Y  S ++I     +  TL+ 
Sbjct: 660 YQASAQIIQVARNLFDTLIN 679


>gi|229138438|ref|ZP_04267027.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST26]
 gi|228644975|gb|EEL01218.1| Flagellar hook-associated protein FlgK [Bacillus cereus BDRD-ST26]
          Length = 420

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/479 (12%), Positives = 144/479 (30%), Gaps = 71/479 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61
              A     +  +N+ N     YVR+                      V  +        
Sbjct: 1   MLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQTLGVDRITDE 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +  K  +   S +       S  +  E M      N S +  +    ++    +KN  + 
Sbjct: 61  VKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPDQS 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               T+I    +     N  A+ +  + A   ++IE  ++   R    L   N  I    
Sbjct: 120 NYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEANQKI--GQ 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A     +  LD+RD ++ ++S+   I     + N  +        L              
Sbjct: 178 AGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T   + N       V        +  G IK+ +  +   +  ++  L+E+   +    
Sbjct: 228 QDTYPLQLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKKNLEELMSSVKNQV 286

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +                         +      ++ + +NP++ ++ S ++     + K 
Sbjct: 287 NTVM--------------------GKDFFVGDYAKELKLNPEFANDFSKMKISAETANKL 326

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +                             ++  +     I  +  ++S+ +  
Sbjct: 327 AGITDEVYKDG-------------------------LSYKKALDQFIVKVASDKSEVNGY 361

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +   I +   +  GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 362 QKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420


>gi|217976241|ref|YP_002360388.1| flagellar hook-associated protein FlgK [Methylocella silvestris
           BL2]
 gi|217501617|gb|ACK49026.1| flagellar hook-associated protein FlgK [Methylocella silvestris
           BL2]
          Length = 496

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 135/496 (27%), Positives = 219/496 (44%), Gaps = 17/496 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKNYVRRDTMTTISPENVTVVTQRSEN 59
           MSL      AQ+   + + + A++ RNI  A+    Y R+      +     V +    +
Sbjct: 1   MSLANAAAIAQSGLASVTTEIATLSRNISGANDTSVYSRKIANVVSTASGSQVTSISRAS 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD---------DHYNNSPTHYISKLRDS 110
                + +   +SAI  +  + +          D              SP   IS+L D+
Sbjct: 61  SQAVFENVLNATSAIAAEDAVSTGLEALATTVGDVASAAGADATSTATSPAALISRLSDA 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+ YS + S+      V+  A  + +  N  +  +Q+ RA AD +I   +S++   L++ 
Sbjct: 121 LQYYSGSPSDMTAAANVVSAANALARGLNQGSAAIQQARATADSDIAAAVSDINSQLAQF 180

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-E 229
             VN+ I   TA   D+ D  DQRD +L++IS  IGIST+   N DM +YT  G TLF  
Sbjct: 181 QEVNEKIIAATAVGKDSTDLQDQRDTILKQISANIGISTVTAGNGDMSLYTDSGVTLFQG 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQN 288
              R ++F    +Y   +    +++DGV ++      A+  GKI  L  IRD+V   +Q 
Sbjct: 241 GRARTVSFTPTTTYVTATVGQAVYVDGVAITGATATMAIASGKIAGLATIRDAVAVTYQA 300

Query: 289 QLDEMARVLIGSFSEKDPI--AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           QLD +A  LI +F E D      +   +     A  I      L   I     V+P    
Sbjct: 301 QLDGVASALITAFRESDQAAVGPDLPGLFTTASATAIPSSAAGLASAIIVNAAVDPSQGG 360

Query: 347 NPSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
           + + LRDGG        + +N    A +   I+   D+ +    F     + T+ ++  Y
Sbjct: 361 DLTLLRDGGIADPSGTDYTYNTSGAASFAGRISELIDNLSATQSFSSSGSLTTSASVGGY 420

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
           A  S+ WLE  RS +         + +  S + SN  GVN+ +E+S ++ +EQSY  S K
Sbjct: 421 AAASVSWLEAQRSAASSRSSYQGALLSTASTALSNATGVNINDEMSKMLDLEQSYAASAK 480

Query: 464 LIMFTDKMLQTLLEGV 479
           L+   + M   LL G+
Sbjct: 481 LLSSINDMFNALLSGI 496


>gi|33601541|ref|NP_889101.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50]
 gi|33575977|emb|CAE33056.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50]
          Length = 473

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/480 (11%), Positives = 112/480 (23%), Gaps = 16/480 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +A +  N ASQ    I  NI N+    +            +  V       + N+  
Sbjct: 2   GFGQALSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +   +                      D           +       Y  N     
Sbjct: 62  TVGNISMTNGEYDMAIDGGKGF-----FRLTDQSGGVFYSRNGEFMVDKNFYVVNAQGFR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEISNLRRFLSELTVVNDAIKF 179
           L             +       +    A        +      +    +        +  
Sbjct: 117 LTGYPAGAVGAQPVDLQLPPGNIAPRPASTAGLQGNLNANAKLINPNDTPAVDGTVELDG 176

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            + S  +A              +   G   I        + +  G   ++ +   I F+ 
Sbjct: 177 TSYSFTNAGGVFAWVAPGPVDGTYNGGDIVIAGGAVTGDLASQPGYQPYQPLVAGIPFDP 236

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N  + T +      D +  S        K        + +       +           
Sbjct: 237 TNPLSYTDQVPTTVYDSLGNSHQMVQYFAKRPAVGTESVYEVYYV--LDGQPMQVNGGAS 294

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-QYRSNPSFLRDGGSVS 358
                D         P   +       +      ++ T+  N      +    +   +  
Sbjct: 295 QTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGY 354

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
               +   ++     L+  Y +   +      +A  N    L     N   W E + S  
Sbjct: 355 SSGEYMGLSVGEDGSLVAKYTNGETQTIGTVVLANFNNVQGLKPVGNN--AWAETSESGQ 412

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             L          I         V+L  EL  +I  +++Y  + + I   ++++Q L+  
Sbjct: 413 ATLGQPGTNGLATIVGQALEGSNVDLSSELVNMIVAQRTYQANAQTIQTQNEVMQVLMNM 472


>gi|220929459|ref|YP_002506368.1| hypothetical protein Ccel_2042 [Clostridium cellulolyticum H10]
 gi|219999787|gb|ACL76388.1| protein of unknown function DUF1078 domain protein [Clostridium
           cellulolyticum H10]
          Length = 454

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 126/479 (26%), Gaps = 26/479 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +       +   I  N+ N +   +                       + +
Sbjct: 1   MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTF----------------QEI 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F++ L    +         +      +  A    +N  T    +  D+    S +     
Sbjct: 45  FNQTLRGAGAPDAATARGGTNPMQIGLGIAVGSIDNQMTGGSPQRTDNPTDLSISGDGFF 104

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           + K  I +  +  +  N    ++  +       +  +  N+  +    T+ +  +KF T 
Sbjct: 105 IVKGSIADTFKFTRAGNFGLDKLGNL-------VSGDGMNVYGWTKYDTLGDGTVKFDTE 157

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           ++    +         +KI      S    + N                   + F   +S
Sbjct: 158 AEITPINLYSDVTNGNKKIIAAKATSYAEFSGNLNSALPILADPDDSDPQFTVPFTIYDS 217

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                E    F     ++                      +              +   S
Sbjct: 218 LGNAHELMVNFKKTDDLTDIPVKLPDGTDGTEPGTEWTYTISDKAGNSVLTDAGKVNFNS 277

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +   + G+++      +              I+       QY  + S             
Sbjct: 278 KGKLVLGDNDAPEQRIMEFDPGQNSGTGKINITLDFKKLTQYAGDNSVKPSNIDGYTTGN 337

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+     L   Y +   +      +AG +    L +   N   ++    S      
Sbjct: 338 LVTFNIGSDGMLTGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNL--FIPTTNSGDFTKG 395

Query: 423 M-KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +         +S        V+L  E + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 396 VPAGSQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELVNLKR 454


>gi|261339382|ref|ZP_05967240.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318183|gb|EFC57121.1| flagellar hook-associated protein FlgK [Enterobacter cancerogenus
           ATCC 35316]
          Length = 547

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 160/548 (29%), Gaps = 74/548 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A     ++  NI + +   Y R+ T+   S             V V
Sbjct: 1   MSSLINSAMSGLSAAQAALNTVSNNISSYNVAGYTRQTTILGASNSTLTGGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E  +     L A  +            +  + + +D    NS +  +     SL+
Sbjct: 61  SGVQREYDSFITNQLRAAQNQSSGLTTRYQQMSKIDDVLSDTT--NSISTTLQDFFKSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    +TV+  A+ +V  F  + + ++   +  +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQTVLGKADGLVNQFKVNDQYLRDQDSQVNTAISTSVDQINNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +   +G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNKIVGVEVSVQDGGTYNISFGNGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +     D           +  G +  LL  R   +   +N L
Sbjct: 239 SKTNQLAAVASSADPTRTTVAYVDDVAGNVEIPEKLLNTGSLGGLLTFRSEDLDNARNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +++A     + + +     ++    G  + +                  +      +   
Sbjct: 299 NQLALAFADAMNTQHEAGFDANGAAGGALFNMGSPAVVGNSHNSVPGATMTASVTDSSKV 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA------ 404
                                        D+  K         ++      +        
Sbjct: 359 QATDYKFEFNGTDWTVTRLSDKTSFTATPDASGKMTFDGLTVNVSGTAATKDSFTVKPVV 418

Query: 405 --------------------------------------RNSIGWLEKNRSDSHDLHMKSQ 426
                                                 +NS         +     + S 
Sbjct: 419 NTIVNMSLAISDESKLAMASAADGGESDNRNGKALVDLQNSKVVGGNKTFNDAYAALVST 478

Query: 427 VVFNHISESYSNTVGVNLQEELSF----------------LIKVEQSYNISNKLIMFTDK 470
           V     S   S+    N+  +LS                 L + +Q Y  + +++   + 
Sbjct: 479 VGSTTASLKTSSQTKANVATQLSNQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANT 538

Query: 471 MLQTLLEG 478
           +   L+  
Sbjct: 539 LFDALINI 546


>gi|216263829|ref|ZP_03435823.1| flagellar hook-associated protein FlgK [Borrelia afzelii ACA-1]
 gi|215979873|gb|EEC20695.1| flagellar hook-associated protein FlgK [Borrelia afzelii ACA-1]
          Length = 627

 Score =  149 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/457 (12%), Positives = 139/457 (30%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTAIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFTSMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +I +S   + N +  +  S+G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQNPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +   V          GK+ ALL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKVQLKT------GKLGALLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFYQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFETTNSNEIVEIPYNAPDTVQDVINRINNSD 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQENENITFRIKHIEDSG 447



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 111/372 (29%), Gaps = 14/372 (3%)

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +     +  I  A        T   ++  +    D+EI+ EI+ L    + +  + + I
Sbjct: 258 TNGPTRTRWNILWANNDKVQLKT--GKLGALLNIRDEEIKNEINELNNLAANIIELVNEI 315

Query: 178 KFKTASKH---------DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
                                  D R       +       I + N+   ++      L 
Sbjct: 316 HETGHGMDKKSGRSFFYQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPE--EKLG 373

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                       N       + P  +  V+   N   A    +I +  ++    V   +N
Sbjct: 374 FYGTLKFETTNSNEIVEIPYNAPDTVQDVINRINNSDAQVTARINSEGKLEIKAVKEQEN 433

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +        I              N  G   A   K++D         T  ++P      
Sbjct: 434 ENITFRIKHIEDSGLFLTKYTGILNESGPEGAYDYKNIDTTDKLTPKSTYSISPLKNPAA 493

Query: 349 S-FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              + D        + +          I     +   +   +    I  N+TL +Y  N+
Sbjct: 494 WIKVADTIDSDPSKIASGIKNLTNEISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANT 553

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      S         +   +++   +  GVN  EEL+ +I+ +Q++  ++K I  
Sbjct: 554 ASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITV 613

Query: 468 TDKMLQTLLEGV 479
           + +++ T++  +
Sbjct: 614 SAELIDTVINKM 625


>gi|111115003|ref|YP_709621.1| flagellar hook-associated protein FlgK [Borrelia afzelii PKo]
 gi|110890277|gb|ABH01445.1| flagellar hook-associated protein [Borrelia afzelii PKo]
          Length = 627

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/457 (12%), Positives = 139/457 (30%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTAIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFTSMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +I +S   + N +  +  S+G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQNPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +   V          GK+ ALL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKVHLKT------GKLGALLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFYQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFETTNSNEIVEIPYNAPDTVQDVINRINNSD 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQENENITFRIKHIEDSG 447



 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 106/347 (30%), Gaps = 12/347 (3%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH---------DAHDFLDQ 193
            ++  +    D+EI+ EI+ L    + +  + + I                       D 
Sbjct: 281 GKLGALLNIRDEEIKNEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFYQELKLTDD 340

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           R       +       I + N+   ++      L             N       + P  
Sbjct: 341 RGRYDTNGNGQFDSVHIFKINSTNEIFPE--EKLGFYGTLKFETTNSNEIVEIPYNAPDT 398

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           +  V+   N   A    +I +  ++    V   +N+        I              N
Sbjct: 399 VQDVINRINNSDAQVTARINSEGKLEIKAVKEQENENITFRIKHIEDSGLFLTKYTGILN 458

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYP 372
             G   A   K++D         T  ++P         + D        + +        
Sbjct: 459 ESGPEGAYDYKNIDTTDKLTPKSTYSISPLKNPAAWIKVADTIDSDPSKIASGIKNLTNE 518

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
             I     +   +   +    I  N+TL +Y  N+   +      S         +   +
Sbjct: 519 ISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDL 578

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++   +  GVN  EEL+ +I+ +Q++  ++K I  + +++ T++  +
Sbjct: 579 TDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625


>gi|33596140|ref|NP_883783.1| flagellar hook protein FlgE [Bordetella parapertussis 12822]
 gi|33573143|emb|CAE36790.1| flagellar hook protein FlgE [Bordetella parapertussis]
          Length = 473

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/480 (10%), Positives = 110/480 (22%), Gaps = 16/480 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +  +  N ASQ    I  NI N+    +            +  V       + N+  
Sbjct: 2   GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +                          D           +       Y  N     
Sbjct: 62  TVGNISTTGGEYDMAIDGGKGF-----FRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA---DKEIELEISNLRRFLSELTVVNDAIKF 179
           L             +       +             +      +    +        +  
Sbjct: 117 LTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPADDGAVELDG 176

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T    +A              +   G   I        + +  G   ++ +   I F+ 
Sbjct: 177 TTYRFTNASGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGYQPYKPLVAGIPFDP 236

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N  + T +      D +  S        K        + +       +           
Sbjct: 237 TNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYV--LDGQPMQVNGGAS 294

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-QYRSNPSFLRDGGSVS 358
                D         P   +       +      ++ T+  N      +    +   +  
Sbjct: 295 QTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGY 354

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
               +   ++     L+  Y +   +      +A  N    L     N   W+E + S  
Sbjct: 355 SSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNN--AWVETSESGQ 412

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             L          I+        V++  EL  +I  +++Y  + + I   D+++Q L+  
Sbjct: 413 ATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472


>gi|94263281|ref|ZP_01287097.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456364|gb|EAT06488.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 879

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/419 (11%), Positives = 126/419 (30%), Gaps = 12/419 (2%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPEN 49
           MS +  V N A+               N+ N D   Y R+                    
Sbjct: 1   MSGITHVLNLAKQALLTHQSSIQVAGHNVANVDTPGYTRQKINIEANTAFPSAAGIMGGG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V       +      + +   SS +G     Q    + E +  ++    +    +++  +
Sbjct: 61  VLADGIARQYDQFMVERIAKQSSLMGNLEAQQQALRVVEPIF-NEARGLALNDLMNQFWN 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S +  S N       + V+ + + +  +  T + E+ + R+D    ++  I+++     +
Sbjct: 120 SWQELSDNPETLGARQNVLQHGQLLADHMGTMSSEIIRARSDIGTNLKSAINDINSISDQ 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I      + +A+D  D+RD L++++S ++ ++          V  +DG  L E
Sbjct: 180 IAQLNSKISTAEVGRSEANDLRDRRDNLVKELSTLVDVNHFADKRGAYSVMLTDGHPLVE 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +             +   ++S+Q      G ++   ++       +  +
Sbjct: 240 GDESWQVDWVDDQLHWIGTDATGRTNSRALNSDQLGGKIGGWLEIHGELAAGDPNNYAGR 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  LI   ++       +       +   +  L +     ++           +  
Sbjct: 300 LDALANALIRELNQLHSSGVGTVRFDDELVGSELGALTSVTTGQVAANTANRNIPAGSIK 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                    +                 +  +  +          +N      +   N  
Sbjct: 360 VNGLDIGQIRGAAPVNGRATEKAANAVNAINQADAGVTARLTTQVNGEGIAEDDLNNIN 418



 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 125/389 (32%), Gaps = 25/389 (6%)

Query: 92  ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
           A D  + +  +       +  + S    + + G+T + + +         + +   I A 
Sbjct: 516 AGDESSITIANLDGDFAAADLTTSILGLDAVAGETKVADTKHNTGEITLFSDQSYTIEAG 575

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
            D                     D    +           D  D          G     
Sbjct: 576 VDD---------NILAQLGLHDVDQRGDQRGDGQLRVVPGDGPDDAFLLNGFKHGEQLDT 626

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
            + +  +    D  +L    P +++ E+  +    + +    I     + + G+  P   
Sbjct: 627 EDGSFSIWLYHDDGSLALPQPVEVSLERAYTARDAAAAINNAIIEAGGTDDPGAEHPIPW 686

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           ++A    ++    +  N   + A               +  +    F    +  L+    
Sbjct: 687 LQAKFDPKEQRFTLTPNDGYQFALDGARQE--------DGTHGRDTFNFLQVAGLNTFFT 738

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
              + TI +N     + ++L      + +   + +  AG         +  +K    +  
Sbjct: 739 GHSAGTIGINQTVADDLNYLA-----AGQVRDDGQVYAGDNTNALEISNLQHK---DNIK 790

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
                  +L  +  + IG +             +++V N ++E      GV+L EE++ L
Sbjct: 791 FEGGRTNSLNGFYNSLIGDIGNKGRTIGRNLEFNELVLNQMNEMRDAVSGVSLDEEMANL 850

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           IK + +Y  + ++I  +D+ML TLL+ V+
Sbjct: 851 IKFQHAYTAAARMISMSDEMLVTLLDTVR 879


>gi|219684499|ref|ZP_03539442.1| flagellar hook-associated protein FlgK [Borrelia garinii PBr]
 gi|219671861|gb|EED28915.1| flagellar hook-associated protein FlgK [Borrelia garinii PBr]
          Length = 627

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 142/457 (31%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+  +                   
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVIMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIVEESHRLGYWTSQDKFVSMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S +  +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCELIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +I +S   + + +  +  S+G
Sbjct: 182 NYIKNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQDPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  + ++ +   V+         GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWSILWANNDKVNLET------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFFSKELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHVFKINSTNEIFPEEKLGFYGTLKFEATNSNEIIEIPYNAPDTVQDLINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSG 447



 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 107/347 (30%), Gaps = 12/347 (3%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD---------FLDQ 193
            ++  +    D+EI+ EI+ L      +  + + I          +            D 
Sbjct: 281 GKLGSLLNIRDEEIKNEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFFSKELKLTDD 340

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           R       +       + + N+   ++      L             N       + P  
Sbjct: 341 RGRYDTNGNGQFDSVHVFKINSTNEIFPE--EKLGFYGTLKFEATNSNEIIEIPYNAPDT 398

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           +  ++   N  +A    +I +  +     V   +N+        I              N
Sbjct: 399 VQDLINRINNSNAQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSGLFLTKYTGILN 458

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYP 372
             G   A   +++D         T  ++P         + D   +    +    N     
Sbjct: 459 ESGPEGAYDYRNIDTIDKLTPKSTYSISPLKNPAAWIKVADTIDLDPSKIAAGINSPTNE 518

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
             I     +   +   +    I  N+TL +Y  N+   +      S         +   +
Sbjct: 519 ISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDL 578

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++   +  GVN  EEL+ +I+ +Q++  ++K I  + +++ T++  +
Sbjct: 579 TDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625


>gi|47566121|ref|ZP_00237159.1| flagellar hook-associated protein 1, putative [Bacillus cereus
           G9241]
 gi|47557038|gb|EAL15368.1| flagellar hook-associated protein 1, putative [Bacillus cereus
           G9241]
          Length = 432

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/492 (12%), Positives = 145/492 (29%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  +  +   S       + S  +  E M       NS +  +    
Sbjct: 60  GVQTLGVDRITDEVKTRQFNDQMSQFSYYAYMNSTLSRVESMVGTT-SKNSLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A++ ++I      +IE  +    R  +
Sbjct: 119 NAFREVAKNPEQSNYYDTLIAETGKFTNQVNRLAKQFEEIEMQTTADIEAHVDEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLLDERDRIMTEMSKYAEIEVSYESANPNIASVRMNGVLT 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                    +   +    S         +   + Q +   K KI       +  V   + 
Sbjct: 237 VNGQDTYPLQLQKNKEPMSLQIYGTDIPLNGGAIQSAIDTKAKITGYKDNLNEFVNSLKK 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q++ +                                  +      ++ + +NP +  + 
Sbjct: 297 QVNTVMNK-------------------------------DFFVGEDAKKLEINPDFTKDI 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + +     +             D          + G+ ++ + +   +N  
Sbjct: 326 SKMKISAETANRLAGITEEDFKPGLTYKQALDQL--------LVGVASDKSSVNAYQNI- 376

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                            + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 377 ----------------HKDLLEGIQQEKMSVEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|152989404|ref|YP_001349644.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PA7]
 gi|150964562|gb|ABR86587.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PA7]
          Length = 682

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+  +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQSAIQQTQVPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +    +S     + + +D       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSDTT--TGVSPAMQRFFAALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S     + V+  A+ + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 TAANNPSSTEAREAVLAQAQGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D +D RD  ++K+SE+IG++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        +     + +       N    V  G++  LL  R+S +    N+L +
Sbjct: 239 VSTLSVVPGLDDPSRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  + + +     +     G  +   I D D    + +            N   ++
Sbjct: 297 LAITLADTINRQLGQGLDLAGKAGSNLFGDINDPDITALRVL--------AKNGNTGDVK 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +         +   TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGSGPYTLS 397



 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/444 (9%), Positives = 91/444 (20%), Gaps = 13/444 (2%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            R     +       V    S  +          +      +L Q    L + ++     
Sbjct: 252 SRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINRQLGQ 311

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                        +L     +     L       A+        +   +         + 
Sbjct: 312 GLDLAGKAG---SNLFGDINDPDITALRVL----AKNGNTGDVKANLNITDTSKLNSSDF 364

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            L+          L          + S      F D   V       +  +         
Sbjct: 365 RLDFDGTNFTARRLGDDASMQVTVSGSGPYTLSFKDANGVDQGFSVTLDKLPAAGDRFTL 424

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                                    +   ++  N         +     +     +    
Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARAESNTDNRGTGKIGAPTLTGAPSPVDPAVLQNA 484

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              + +        D     L            + +               N +    ++
Sbjct: 485 FGPNGISLAATLSADGKTYTLSSPLPAGWSY-VDKDGNALSGSPTLTSGNSNTVRMAFTD 543

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                  Y    S +       K    +         L     D              NT
Sbjct: 544 PSGQKYSYEFELSGVPQNADSFKVGFNDKGISDNRNAL-----DLLALQTKPTVGGTDNT 598

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             T  E     +  +    +        S  V     +S  +  GV+L EE + LI+ +Q
Sbjct: 599 GSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLIQFQQ 658

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
            Y+ S ++I     +  TL+   +
Sbjct: 659 YYSASAQVIQVARTLFDTLIGAFR 682


>gi|319944129|ref|ZP_08018407.1| flagellar hook-associated protein [Lautropia mirabilis ATCC 51599]
 gi|319742623|gb|EFV95032.1| flagellar hook-associated protein [Lautropia mirabilis ATCC 51599]
          Length = 628

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 129/378 (34%), Gaps = 13/378 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  +    Q+    A  Q  +   NI N     YVR++     +             V V
Sbjct: 1   MAGLIQIGQSALAAAYTQLQTGGHNIANVHTPGYVRQEVQLATAGGQYHGHGYIGNGVEV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R          +   +S  G   +        + + AD          + + R +L 
Sbjct: 61  QDVRRAYDRFMADEVTRSTSLAGTDAVRAQQLGQVDNLLADT--ETGIGVAMDEFRAALG 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                 ++      +   A  V   F+ ++++++ +  +A + +E     +   L ++  
Sbjct: 119 DLVNQPADGSARAVIAARANTVANRFSETSQKLEAMVGEAGRRLEDSAQYVNARLEQVAS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A+ H  +D LDQRD L+ +++  I ++   + +  + +Y+++G +L  +  
Sbjct: 179 LNRQITQSYANGHQPNDMLDQRDSLINELASKIQLTRDDQPDGSVNLYSANGHSLVLSER 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                              + I G  V     S +  G+I  LL+ RD  +   Q  L  
Sbjct: 239 AAQLKTVPGDADSARTRLMLDIHGKQVEM-SESTLGSGEIAGLLRFRDQDLLAVQASLGR 297

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA    G+++ +     ++    G  + +  K +                   ++     
Sbjct: 298 MAAAFAGAYNAQQARGLDANGKRGQAMFEVGKPVVQAADHNTGGAKLEVSVLDTSKLKAA 357

Query: 353 DGGSVSKKFLWNVKNLAG 370
           D        ++ ++++  
Sbjct: 358 DYRLSYDGSVYQLEDVVS 375



 Score = 87.0 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           ++  +              T  +   + +  +      +      S  +        +N 
Sbjct: 528 NANAREMTLLADRHNVDGATFSQAFASLLSDVGSRALQAKTSEKASAKMLEGAKTVLANR 587

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            GVNL EE + L++  Q+Y  + K+I   D+M  ++L   +
Sbjct: 588 SGVNLDEEAARLLQYRQAYQAAAKVIQTADEMFNSILALAR 628


>gi|315497625|ref|YP_004086429.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48]
 gi|315415637|gb|ADU12278.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48]
          Length = 472

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/491 (12%), Positives = 139/491 (28%), Gaps = 30/491 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           MSL A            S   ++I  NI N+    Y R  T        + +P       
Sbjct: 1   MSLSASMQAGVAGLAANSNALSAISNNIANSTTTAYKRVRTDFQSIVTASSTPTGYNAGG 60

Query: 55  QRSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
             S  ++M      L   SS +      Q F    +  S     +              +
Sbjct: 61  VISTTRHMISTLGTLQKASSQLDLGIDGQGFFITTQK-SEPGAEDARLFTRDGSFFADED 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y +N S   L    I        +    ++       +   +IE              V
Sbjct: 120 GYLRNASNLYLQGWPITAGGGPTLSAADLSQLRTINVENIAAQIEPTT-------FAEIV 172

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N       + + D +        +    +     +T  R + ++ +  SD       + 
Sbjct: 173 GNLNANQTISDRADEYAASPTTLPMATYDASAPDTTTSTRPDYEITIPVSDSQGGERRLT 232

Query: 233 RD---INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +  +   +  + + +    +    V  +  S   +     ++          +  
Sbjct: 233 VSMIKLAADPTATPPIAANTWAYEVWSPDVKDSTISPATEASTNGIVS---------RGH 283

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L   +   +    +    +  + ++   F  +    +  +  Q             ++ S
Sbjct: 284 LVYNSAGKLTDIVDSTGTSTGATSLNLSFNWNSAIGVAAQTVQVEFNGDQGGLTQLNSAS 343

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
             R     +     +   ++    +   + +   ++     +A       L   + N   
Sbjct: 344 TNRVDADGTPFSGLDKVQISKEGLVTAVFKNGSTRDIAQLALATFVNADGLTPVSGN--A 401

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +   N S    L +        +         V+L EE + LI  +++Y+ +++ I   D
Sbjct: 402 YTVSNDSGPLTLKVPGVSGAGLLGVGTLEASDVDLSEEFTNLIVTQRAYSANSRTITTAD 461

Query: 470 KMLQTLLEGVK 480
           +MLQ LL   +
Sbjct: 462 EMLQELLNIKR 472


>gi|83312926|ref|YP_423190.1| flagellar hook-associated protein [Magnetospirillum magneticum
           AMB-1]
 gi|82947767|dbj|BAE52631.1| Flagellar hook-associated protein [Magnetospirillum magneticum
           AMB-1]
          Length = 858

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 147/437 (33%), Gaps = 12/437 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL    N A +      +    I +N+ N + K YVR+               V     
Sbjct: 1   MSLTLGLNSALSGLLTNQKGLDVISQNVVNVNTKGYVRKQMTPESRVVAGVGAGVQQGAL 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    + +   +S  G   + Q++    E M      +NS +H I  L+ S E+ +
Sbjct: 61  TRNVDEGLMRDIRRQTSTQGALDVTQTYYPRLEDMFGTVGSSNSISHQIETLQASFETLA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             ++      + +  A ++   FN     +Q +R +AD+ +      + + L ++  +N 
Sbjct: 121 TQVNTPAFQSSTVQTANDMTDQFNEMTTHMQNLRLEADRALHDTTGQVNKQLEDIFDLNQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I    A   D  D  D+RD  L  +S+ + I    R +  + V+T  G TL +  P  +
Sbjct: 181 KIVRNNAIGGDIGDLQDKRDNALTTLSKYMDIQYFERGDGSVGVFTKSGKTLVDKGPAVL 240

Query: 236 NFEKMNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           +            S     +        S + G  +  G+++ALL +RD++VP  Q Q+D
Sbjct: 241 SHVATTITDSWMTSAGGNFNKLTLSTTDSPDVGEDINDGEVRALLDLRDTIVPNLQAQID 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           E+A  L  + ++               +        N                 ++ + +
Sbjct: 301 EVASKLKDAVNQVHNRGTIFPTQSSKMVGTRQLADPNNPALNG-SNPQNIWFSGNDDTTI 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               +   +                    +     I D        +T  + A     W+
Sbjct: 360 ALFDTNGNQLAATTVRTIMSSTSYTDAAGAATALDISDAATTPGVKMT--DVAAKIQSWM 417

Query: 412 EKNRSDSHDLHMKSQVV 428
            +     + +   S  V
Sbjct: 418 RQQSYQGNIMSAASASV 434



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/442 (11%), Positives = 128/442 (28%), Gaps = 12/442 (2%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
              +        V+     +  +  +   A ++         +F+   +  +       S
Sbjct: 428 SAASASVSTGTLVLDTGVPSVTLAFRDQKATAAGSAAADARINFDVDGDNKADKQVAGFS 487

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               ++    +    S   S+ +     +  A     +  T       I   A   +   
Sbjct: 488 NFFGLNDFFTASVPNSIVDSDVVSKDFTLGAARSFTLSDPTGKIG-NTINMSAGSSLYDI 546

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +            +    T +        D    + Q       ++     +     
Sbjct: 547 AKKINAQTQTNESATLSSSSLTTTSTTNITINDANGRVTQLSLASGNMTLKDIADAINAQ 606

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            +S      +  P        +S  V  +   + ++G  + ++   +    +   L++  
Sbjct: 607 GSSAQAAAVQEGPNAYRLRVWDSRGVPLD---VTVNGGTIGTSDMKSYLGLQPSQLVEA- 662

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
                    +       +  +   +  +    + +           +     +    TI 
Sbjct: 663 -----SVIPEGAGYRLRIRQTSDRELFLGATPDTLTPSGSFITELKMHTASSRKA-GTIA 716

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNV 398
           V    + +P+ +  G       L       G          + +          +   + 
Sbjct: 717 VRTDIQGSPAKVSRGSMQYNTDLGKYFLSEGDNTTALALGAAMSSKTDMATAGSLYAGSY 776

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           T  E+A  SI  +  + + + D       +   ++  +++T GVNL EE++ +I  +Q+Y
Sbjct: 777 TFAEHAAASIAQVSTDAAHAKDRQDYQTTLGQALNSQFASTSGVNLDEEVANMINFQQAY 836

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
           + S K+I    +ML TL+  VK
Sbjct: 837 SASAKVISTLQEMLDTLVNIVK 858


>gi|225552251|ref|ZP_03773191.1| flagellar hook-associated protein FlgK [Borrelia sp. SV1]
 gi|225371249|gb|EEH00679.1| flagellar hook-associated protein FlgK [Borrelia sp. SV1]
          Length = 627

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTAIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEMHEAGHGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIIEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQENENIAFRIKHMEDSG 447



 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/380 (10%), Positives = 104/380 (27%), Gaps = 9/380 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++   A   IE+ 
Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINELNNIAANIIEIV 312

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                           +   +     D     D           I  I++      +  +
Sbjct: 313 NEMHEAGHGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEKL 372

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                     T   +I     N+     +      +     + + ++  K +IKA+ +  
Sbjct: 373 GFYGTLKFEATNSNEIIEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQE 432

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +  +      +++    L       +            +      +            + 
Sbjct: 433 NENIAFRIKHMEDSGLFLTKYTGILNASG---PEGAYDYKNIDTTEKLAPKSTYSISPLK 489

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               +      +    S     + N  N     D       +   +   +    I  N+T
Sbjct: 490 NPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNLT 545

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +Y  N+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++ 
Sbjct: 546 LNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFI 605

Query: 460 ISNKLIMFTDKMLQTLLEGV 479
            ++K I  + +++ T++  +
Sbjct: 606 AASKFITVSVELIDTVINKM 625


>gi|168334552|ref|ZP_02692708.1| hypothetical protein Epulo_06138 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 473

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/493 (8%), Positives = 112/493 (22%), Gaps = 35/493 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++       +   +   +   I  NI N +   +  +                     + 
Sbjct: 1   MMRSLFSGVSGLQSHQLKMDVIGNNIANVNTIGFKSQRVTFADVYYQTTQSATTANEMTG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                  Q     ++    +     +  +           + M        +        
Sbjct: 61  LGGMNAMQIGLGTSVSSIDMLMTPGSAQRTDNPFDLMIEDDAMFIVSDATGTYYTRSGAF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           R          +   +     +     +        ++     ++         N+   L
Sbjct: 121 RVDERGTLVIPNGMRVQGWPANEIGTEIMRGTVGDLKLNTPENNSADPQTTTDVNITGNL 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           +    +N      +        +    D L  + S  I  +    +        + G   
Sbjct: 181 NVDDSINADGTTASPIYSAIKFY----DTLGTQYSMPITFTATTLDAAQGQTVWTIGIPA 236

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                    F  +             +     +  +     +  +    ++         
Sbjct: 237 DTLTTPPNPFTTITDTDGNQYLITPPVPTPNPAVIKFDVDGEIVLDGTEEM--------- 287

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            Q   +           DP       +       G      ++   +            N
Sbjct: 288 -QFTAINLRNAYVRDPDDPSIATLAPIIADVGTQGTGGGTIEVNLSLLTQYDSITNLDPN 346

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              L   G+          ++     +  +Y +   K      V   +    L + A N 
Sbjct: 347 MGTLDFNGAGKAAGEMQGFDVGTDGKITAYYSNGDIKLLGQVAVTYFDNLAGLEKVADN- 405

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                  +S ++             +        V+L +E + +I  ++ Y  S+K I  
Sbjct: 406 -----VFKSTANSGDFDGVGAAGSFATGTLEMSNVDLSKEFTEMITTQRGYQASSKTITT 460

Query: 468 TDKMLQTLLEGVK 480
           +D+MLQ L+   +
Sbjct: 461 SDEMLQELINLKR 473


>gi|229017025|ref|ZP_04173945.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1273]
 gi|229023207|ref|ZP_04179718.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1272]
 gi|228738132|gb|EEL88617.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1272]
 gi|228744296|gb|EEL94378.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1273]
          Length = 432

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/492 (11%), Positives = 142/492 (28%), Gaps = 72/492 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNLGSVGASNGHTPGQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S       + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQFSYYAFMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+     +     N  A+ +        ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQSNYYSTLAAETGKFTSQVNRLAKNLDTAEIQTTEDIEAHVNEFNRLGA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +   D+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANKKI--GQAGTQVPNQLFDERDRIITEMSKYANIEVSYESMNLNIASIRIDGVL- 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T   + N       V        +  G I++ +  +   +  ++ 
Sbjct: 236 ---------TVNGQDTYPLQLNKGNEPMTVAIYGSDIPLTGGAIQSAIDTKAK-IASYKK 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            ++++   +    +          +                        I +NP++  + 
Sbjct: 286 NIEDLMSSVKNQVNTVMGKDFFVGDHAK--------------------DIQLNPEFAKDV 325

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S ++     + K                                     ++  +     I
Sbjct: 326 SKMKISAETANKLAGITDGDYKEG-------------------------LSYKQALDQFI 360

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +  +++  +      + +   I +   +  GVN++EE+  L+  ++ +  ++K I   
Sbjct: 361 VGVASDKNAVNAYQNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTM 420

Query: 469 DKMLQTLLEGVK 480
           +++  +L   ++
Sbjct: 421 NEVFDSLFSIIR 432


>gi|327398477|ref|YP_004339346.1| flagellar hook-associated protein FlgK [Hippea maritima DSM 10411]
 gi|327181106|gb|AEA33287.1| flagellar hook-associated protein FlgK [Hippea maritima DSM 10411]
          Length = 580

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/427 (12%), Positives = 132/427 (30%), Gaps = 20/427 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVT 51
           ++    N   +          +   N+ N +   Y R                +      
Sbjct: 3   TIFDALNIGVSGIFVNKAAINTTGNNVANVNTPGYSRERVDILPSMPMYSYAGVFGTGAK 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +    S    + D+ + A +  +     L S     + +  ++         + +  ++ 
Sbjct: 63  IDQIISTRDELIDRRVRASNQEMSYYNKLNSSMDEIQSIF-NEENGVGLKGAMDQFFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            + S N   +   + VI+    + +    +   + +I+ + D ++   ++ +      + 
Sbjct: 122 HALSLNPDLETARQQVIEKGLTLSKAIKDANASLNQIKTNLDDQVSSTVTEINSLSKRIA 181

Query: 172 VVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTSDGTT 226
            +N  IK       D A+   DQR VLL+K+S I  ++             +     G  
Sbjct: 182 QLNYEIKKAELGDKDHANTLRDQRSVLLEKLSSIADVTILEGSYNNQTKPEMTVLLGGMP 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L      +    +      +      F++      +  S +  G + A+L +RD ++  +
Sbjct: 242 LVSGKDYNELTAEK--LNGSEYYRVYFVEPSNAKVDITSRIKNGSLGAILNLRDKIISEY 299

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +N +DE+A+ LI   ++           P   I        N      + T         
Sbjct: 300 KNNIDEIAKTLIQEINKIHSSGAGLT--PYSQIEGIYAADPNAALSIPNATGLDIAVKTG 357

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +        + ++  ++ +              D  +    F+ +      +++    + 
Sbjct: 358 SFKLKVIDENNNEVGVFTIPVNEDDHLQAQDPSDEHSLIERFNNIMQGYAQMSISPAGKV 417

Query: 407 SIGWLEK 413
            I  +  
Sbjct: 418 QIKAIGN 424



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 5/197 (2%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P  ++ L E    ++  +++          +  +         D+      +        
Sbjct: 389 PSDEHSLIERFNNIMQGYAQMSISPAGKVQIKAIGNYKFAFTYDSSNLLAATGINTFFTG 448

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
           + S+   +          +   K L           ++     +      +N   T+ EY
Sbjct: 449 HNSSDIDVNRIVQNDPSKIAAGKTL-----NPGDSSNAQTIAQVQLNKVMVNNTQTIDEY 503

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +G +   +    +++   + V+  +  +  +  GV+L EE + LIK +++Y  + K
Sbjct: 504 YNAFLGSIGSTKQRFDEIYKAKEAVYQQLKTTQQSLEGVSLDEEAANLIKFQRAYQANAK 563

Query: 464 LIMFTDKMLQTLLEGVK 480
            I   D M QTL+  V+
Sbjct: 564 FISVVDDMTQTLINMVR 580


>gi|219685806|ref|ZP_03540615.1| flagellar hook-associated protein FlgK [Borrelia garinii Far04]
 gi|219672639|gb|EED29669.1| flagellar hook-associated protein FlgK [Borrelia garinii Far04]
          Length = 627

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 120/336 (35%), Gaps = 24/336 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIVEESHRLGYWTSQDKFVSMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S +  +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCELIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +I +S   + + +  +  S+G
Sbjct: 182 NYIKNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLISVSIENKQDPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  + ++ +   V+         GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWSILWANNDKVNLET------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
              N+L+ +A  +I   +E        +   G    
Sbjct: 296 NEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFF 331



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 107/347 (30%), Gaps = 12/347 (3%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD---------FLDQ 193
            ++  +    D+EI+ EI+ L      +  + + I          +            D 
Sbjct: 281 GKLGSLLNIRDEEIKNEINELNNLAVNIIELVNEIHETGYGMDKKNGRSFFSKELKLTDD 340

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           R       +       + + N+   ++      L             N       + P  
Sbjct: 341 RGRYDTNGNGQFDSVHVFKINSTNEIFPE--EKLGFYGTLKFEATNSNEIIEIPYNAPDT 398

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           +  ++   N  +A    +I +  +     V   +N+        I              N
Sbjct: 399 VQDLINRINNSNAQVTARINSEGKFEIKAVKEQENENITFRIKHIEDSGLFLTKYTGILN 458

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYP 372
             G   A   +++D         T  ++P         + D   +    +    N     
Sbjct: 459 ESGPEGAYDYRNIDTIDKLTPKSTYSISPLKNPAAWIKVADTIDLDPSKIAAGINSPTNE 518

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
             I     +   +   +    I  N+TL +Y  N+   +      S         +   +
Sbjct: 519 ISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDL 578

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++   +  GVN  EEL+ +I+ +Q++  ++K I  + +++ T++  +
Sbjct: 579 TDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625


>gi|320107049|ref|YP_004182639.1| flagellar hook-associated protein FlgK [Terriglobus saanensis
           SP1PR4]
 gi|319925570|gb|ADV82645.1| flagellar hook-associated protein FlgK [Terriglobus saanensis
           SP1PR4]
          Length = 467

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 165/489 (33%), Gaps = 43/489 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------ISPENVTV 52
           SL ++ + A+    N+     +   NI N     Y R+  +               +   
Sbjct: 3   SLTSLLSIARQALANSQTAIDATGTNISNQHTVGYTRKTAVFAESDTVDVGGSLLGSGAT 62

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN---NSPTHYISKLRD 109
           VT  S+   + ++ +   + A GQ     +     + +      +   +     +    +
Sbjct: 63  VTIVSQRDRILEQRMQQQTQADGQTSARLTALQSVDSIFQTTTSSADASGIGSSLDAFFN 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S  +   N ++    + V+ +A+        ++ ++     D  +++   ++ + +  S+
Sbjct: 123 SFSALEANPTDGATRQAVLTSAQTFATAIQAASSQLTSQATDLGQQVSGSVAQVNQLTSQ 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I   +    DA D  DQR  L+ ++S ++G+S     NN + + T++GT L  
Sbjct: 183 IAALNGKISSTSPD-ADAGDLEDQRQELITQLSGLVGLSQSSTANNGIALTTTNGTPLVG 241

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                    +    +V      +F     VS++  SA+  G I   +Q RD  +   Q  
Sbjct: 242 GNISYNLTAQNVGGSVH-----VFGQQNGVSTDITSALSGGSIAGDIQARDVDIASAQTS 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  +  + + ++    +     G  I                            PS
Sbjct: 297 LDTLAFDVATAVNTQNSAGKDENGAVGGNIF-------------------------GVPS 331

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +     L +   +A           +            I    T   +  + + 
Sbjct: 332 SASGAAASLTVSLTDPAGIAAASGTDGAGGSTNATALAALGSGKIVGGETPASFFGSFLT 391

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            L    S +      +       +   +   GV+L EE S L + ++SY  + K+    D
Sbjct: 392 QLGTTISGATTDETVTAAELTQATAQRNALSGVSLDEEASNLTEYQRSYQAAAKVFSIVD 451

Query: 470 KMLQTLLEG 478
           +M  + +  
Sbjct: 452 EMFASAINL 460


>gi|291562058|emb|CBL40874.1| flagellar hook-associated protein FlgK [butyrate-producing
           bacterium SS3/4]
          Length = 557

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 154/550 (28%), Gaps = 76/550 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
             + FN A +      ++     +N+ N +   Y R+    +                  
Sbjct: 5   TFSGFNTALSALQANQKRLDITGQNLSNMNTAGYTRQQLEASSLNYTNPVSHYSNGNETA 64

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V++           D    + S+       LQ+       +  D+   +       
Sbjct: 65  VGFGVSMDRVSQIRDPYLDIQYRSQSADCSYTNRLQTALNSLSKVL-DETTISGIRQAFD 123

Query: 106 KLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI------- 156
            ++ +L S       S+ I    +    + V   FN ++R++ +   +  + +       
Sbjct: 124 DVQSTLTSMQDPAKVSDPIYESELRTKMQSVCNLFNQASRQITQAEQNEFQRLTGEGSSE 183

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           + ++  +   L ++  +N  IK    + H + +  D+R++LL ++S  I + T    ++ 
Sbjct: 184 QGDVQKINDILRQIGDLNVQIKRNQVAGHPSLELQDERNLLLDELSGYIPVETRYYKDDA 243

Query: 217 MV-----VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
                   Y ++G  + +    D     MN      +S  + +         G     G+
Sbjct: 244 HSGNNAYDYDANGAVIGKKDWPDDLEVSMNYIDAQGKSQKLILVNGSDLGADGLTKNYGQ 303

Query: 272 IKALLQIRDSVV---------------------------------------PIFQNQLDE 292
           +  L +                                                Q  LD 
Sbjct: 304 LSVLNRDHQPAASVSDPANISIKFEKAPSYQVNGQAAADVYAELKGIHFEGGSLQASLDM 363

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ-----YRSN 347
           + +   G          +                        S     +         ++
Sbjct: 364 LQKTGTGKVINGSTAVDDVRGYQYYSEKLDQLASTFAKSMNDSNNGKNHTDKNLLSNSTD 423

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            S                           +  D+                 T  +Y  N 
Sbjct: 424 DSTTGITAGNIGISKGWTSGTIHISTDGTNRTDTILDMIAAMKDTKKLNGKTFADYMNNL 483

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              L  + S +         V N I +S  +  GV+L EE + ++    +YN +++L+  
Sbjct: 484 STQLASDSSSNQTALKTGTTVLNSIQDSRDSLSGVSLDEEATNMMAYVSAYNAASRLMTA 543

Query: 468 TDKMLQTLLE 477
            D++L TL+ 
Sbjct: 544 LDEVLNTLIS 553


>gi|203284102|ref|YP_002221842.1| flagellar hook-associated protein [Borrelia duttonii Ly]
 gi|201083545|gb|ACH93136.1| flagellar hook-associated protein [Borrelia duttonii Ly]
          Length = 627

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 147/419 (35%), Gaps = 28/419 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S  +     +           ++  N+ NA    Y R+  +                   
Sbjct: 3   STFSGIEIGKKSLFAHKDAMNTVGHNLTNATKPGYSRQRIIMKTEMPIYAPQLNRANKAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + D  +   S  +G   L   F +L E +  ++    S    +
Sbjct: 63  QLGQGIMVQSIERIRDELLDIKIAEESHHLGYWNLKDRFISLLENVY-NEPEEQSMRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +    S +  SK          +++  +  V+   +    +++I   A+ EI++    + 
Sbjct: 122 NDFWASWQDLSKQPQGLAERNIILERGQAFVEVVTSRFHSLERIYTMANDEIKITTEEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +L  ++ +N  I    A K   +D +D+RD+++ K+S +I IS   + + +  +   +G
Sbjct: 182 NYLRNISDLNKQIAKAIAMKDHPNDLMDERDLIIDKLSNLISISIENKRDPNEFLIHMEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    ++ N ++ +    + N       GK+ AL+ IRD+ + 
Sbjct: 242 KHLIQGTIANELILEAANGPTKTKWNILWNNRETANINT------GKLGALINIRDNEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICV 340
              N+LD +A  +    +E        +   G    +    L +   +  S        V
Sbjct: 296 NEINELDNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSV 355

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +    ++ + +     +    +   + +     +   Y  +     + D +   +  VT
Sbjct: 356 HIFKVNSTNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVT 414



 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 95/331 (28%), Gaps = 8/331 (2%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            +    I   ++ +      L   N  I F +     D     D           I  ++
Sbjct: 302 DNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSVHIFKVN 361

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           +    +    +  +           D      N+     +      +     + + +   
Sbjct: 362 STNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVTARINENK 421

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           K +IKA+ +            +++    L       +            +      D   
Sbjct: 422 KFEIKAVKEEDKDSTIFRIKHIEDSGLFLTNYTGILNASGI---EGAYNYQNINTTDQLT 478

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +     +     +      + +  S     +    N     D       +       
Sbjct: 479 NTTRYSISPLKNPSAWIRISKIITEDPSKIASGIKTPTNNTPIGDNKVALRIA----SFV 534

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           +    +  N TL +Y  N+   +      +       + +  ++++   +  GVN  EEL
Sbjct: 535 NSQIMVEKNSTLNDYFVNTASNIAIKGQIAEVTKNSQEQILKNLTDLRLSISGVNKDEEL 594

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +I+ +QS+  ++K I  + +++ T++  +
Sbjct: 595 ANMIEFQQSFIAASKFINVSAELIDTIINKM 625


>gi|319787115|ref|YP_004146590.1| flagellar hook-associated protein FlgK [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465627|gb|ADV27359.1| flagellar hook-associated protein FlgK [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 625

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/454 (12%), Positives = 142/454 (31%), Gaps = 26/454 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           +V +          +  +++  N+ N + + Y R+                      V  
Sbjct: 2   SVLSTGTGALLAFQRALSTVSHNVANVNTEGYTRQRVDFAARRPSDYGYGHVGNGTQVAD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R     +    L      + +   L +     + + +D     +     S   DS+ + 
Sbjct: 62  IRRLADELATSRLLDSGGELARLEQLSTLTGRLDTLFSD--SATNLAGVWSDFFDSVSAL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N +     + V+  A  +   F     +++ + ++ + ++    S + R   E+  +N
Sbjct: 120 SSNAAGAAERQNVLAEAGALAGRFRQLDGQLRALDSEVNNKLLAGASEISRLAGEVARIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   + +   A D LD+RD L+ ++    G + + ++   + V+T+ G  L   V   
Sbjct: 180 GEI--GSDASKAAPDLLDRRDQLVAELVGFTGGTALSQDGGPISVFTAGGQPLVVGVQAS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 ++Y        + ++G   ++        G +  L++ R++V+     +L  +A
Sbjct: 238 SITTVPDTYRPERLQ--LALEGGGTTTVLDQRALGGSMGGLVEFRNTVLDPAAAELGRIA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------CVNPQYRSNP 348
             +  +F+E      +     G    D    L N+                V+     + 
Sbjct: 296 VAMAATFNEGHAAGMDLYGNLGGSFFDVPAPLVNQHAGNAGNASLQARVGDVSALSGQDL 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                 G  +       + +                  +    +    +  LL+    + 
Sbjct: 356 VLRFGEGGWTALRADTGEAVPMTGSGTAADPFVVAGISLEVSGSAAPGDRFLLQPTAGAS 415

Query: 409 GWLEKNRSDSHDLHMK----SQVVFNHISESYSN 438
           G +    SD   +            ++I     +
Sbjct: 416 GSIGVAISDPSRIAAALPVRGSAAVSNIGSGVLS 449



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/429 (8%), Positives = 99/429 (23%), Gaps = 5/429 (1%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             ++ + + V     +A+ Q     S               +S T      R      + 
Sbjct: 196 RRDQLVAELVGFTGGTALSQDGGPISVFTAGGQPLVVGVQASSITTVPDTYRPERLQLAL 255

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                            +          +    A+  +      +      +    +   
Sbjct: 256 EGGGTTTVLDQRALGGSMGGLVEFRNTVLDPAAAELGRIAVAMAATFNEGHAAGMDLYGN 315

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT---LFETVPR 233
           +                 +     +   +G  + +   + ++ +   G T          
Sbjct: 316 LGGSFFDVPAPLVNQHAGNAGNASLQARVGDVSALSGQDLVLRFGEGGWTALRADTGEAV 375

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +      +         + + G     ++    P       + +  S        L   
Sbjct: 376 PMTGSGTAADPFVVAGISLEVSGSAAPGDRFLLQPTAGASGSIGVAISDPSRIAAALPVR 435

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
               + +           E      +            + + +                 
Sbjct: 436 GSAAVSNIGSGVLSGLRVEAAGNPALLQEATIEFLDSGEYMVDGAGPFDYTPGQRISANG 495

Query: 354 GGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              V            +A          ++     + D        ++L          +
Sbjct: 496 WSVVLDGVPAAGDQFVVARNGTGSGDNGNASRLANLDDARVVSGGTMSLNGAVGGLTTMV 555

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +       QV+ N    +     GVNL EE + +++++Q+Y  + ++I   D M
Sbjct: 556 GSAARQAEYAADAQQVIHNDAQAARDAVAGVNLDEEAANMLRLQQAYQAAAQIISTADTM 615

Query: 472 LQTLLEGVK 480
            QT+L  V+
Sbjct: 616 FQTILSAVR 624


>gi|328545572|ref|YP_004305681.1| flagellar hook-associated protein [polymorphum gilvum SL003B-26A1]
 gi|326415313|gb|ADZ72376.1| Flagellar hook-associated protein [Polymorphum gilvum SL003B-26A1]
          Length = 459

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 184/483 (38%), Gaps = 46/483 (9%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQRSENKNMF 63
            A +   +   Q +    N+ NAD + Y R+   +       +   VTV    S    + 
Sbjct: 10  IATSSLASTQVQLSIAANNVANADTEGYTRKTASSVALTTAGTGSGVTVGKITSGVSRIL 69

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS----PTHYISKLRDSLESYSKNLS 119
              L A ++A G+  +   +    + +      ++       + ++ + ++  + +    
Sbjct: 70  LADLVAATTAAGEAGVTADYLDRLQSLMGSTSSSSGNGTSLANSLAAVEEAFAALADTPE 129

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L  T ++  +E+       +  VQ +R+ AD +I   +++    ++ +  +N+ I  
Sbjct: 130 SVSLAATAVNELDELAAQLRALSASVQSLRSAADTDIAAAVTSANDTITAIASLNEQILA 189

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             A      D  DQR+  L  +S+ +G+++ + ++  M VYT+ G  L ++    ++F+ 
Sbjct: 190 TAARGQSTADLEDQRNQALATLSQSLGVTSFIADDGSMKVYTTTGQVLVDSRAHLLSFDP 249

Query: 240 MNSYTVTSESNPIFIDGVVVSSN---QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +S       +        ++ +     +++ +G+I ALL +RDS +P  Q  LD +A  
Sbjct: 250 SSSVGAGVVYDGSGSGLSGITVDGKDITASMTEGEIGALLALRDSTLPEVQEMLDALAST 309

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L+ S +   P   +                                   ++ + +   G 
Sbjct: 310 LVSSLNAVSPDLLS----------------------------------GTDATDITVNGD 335

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           + +     +    G             K    D         T  +YA   +  +  + +
Sbjct: 336 LLRTPSALLPETGGADIATALVEALQGKTAFPDTARQGGGESTFADYAARLLSLVVSDAN 395

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +     ++      IS++ S+  GVN+ EE + +  +EQ Y+ S +++    +M + LL
Sbjct: 396 SASAHLERATAQLAEISDTMSSLYGVNIDEETARMSNLEQLYSASAQVLSILKQMYEDLL 455

Query: 477 EGV 479
             +
Sbjct: 456 AAI 458


>gi|260222474|emb|CBA32074.1| hypothetical protein Csp_D30300 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 656

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/390 (11%), Positives = 124/390 (31%), Gaps = 12/390 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ N              +   NI N +   Y R++ +               + V V T
Sbjct: 2   SILNIGTRALQANQIALQTAGNNIANVNTPGYSRQNVVLKAVEGQFSGGGYVGKGVEVQT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +        +     SS      +  +     + +      ++     IS + ++    
Sbjct: 62  IQRSFSAFLTRQATLASSTQSADVVRSNNLKQLQDIF--SGGSDGLGASISDMMNAFSDV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + + S+       +   +E    F  +A+ +  +R    +E+      +    + +  VN
Sbjct: 120 ASSPSDLTARTVALTRVDETAGRFRAAAQALDDLRPSVTQELNQIADKINNLATGIASVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           D+I     +    +D LD+RD L++++++ +  ++I   +  + ++ +    L       
Sbjct: 180 DSIAKARGNGQPPNDMLDRRDQLIRELNQYVQTTSIPATDGTVGIFIAGSQPLVLGTNVS 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + +     S         +      A+  G++  L++ ++S +   +N L  + 
Sbjct: 240 PVSIINDDFGDPQLSKLAIERDGKLVPLDDQALGGGEVAGLIRFQNSDLVEGRNLLGRLT 299

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  + +E+  +  + +  PG  +   I        +       VN    S    + D 
Sbjct: 300 LAITTAMNEQHALGLDLDGNPGSNLFSQIDINTTANIRVPQAPAIVNTGTASLSLGISDV 359

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
              +          +    ++         
Sbjct: 360 TKFAASDYELTYTSSTSGTIVRKSDGQVTS 389



 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/432 (11%), Positives = 119/432 (27%), Gaps = 13/432 (3%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              V      N +  D  L   +              L +                S L 
Sbjct: 235 GTNVSPVSIINDDFGDPQLSKLAIERD-----GKLVPLDDQALGGGEVAGLIRFQNSDLV 289

Query: 109 DSLESYSK-NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +      +  L+             ++  N  ++      I   A+  +    + +    
Sbjct: 290 EGRNLLGRLTLAITTAMNEQHALGLDLDGNPGSNLFSQIDINTTANIRVPQAPAIVNTGT 349

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L++    +    AS ++          +++K    +             +   DG   
Sbjct: 350 ASLSLGISDVTKFAASDYELTYTSSTSGTIVRKSDGQVTSFPQSPAPAAPALAVVDGLVF 409

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +        ++       +  + I            ++   G +    +         Q
Sbjct: 410 NQNAGTANLGDRYLFKPYATSVSNISRVFSTPRQLAVASPVAGAMGTTNKGSLQ-----Q 464

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             L  ++     +      +   S             +         +    V+P    +
Sbjct: 465 VSLTALSNNQSATPHAAVKLTFTSATTYTRSDELPTANTTTYTFDPNTPITAVDPLADWS 524

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   +     + +VK+ A   D+  +  ++     + D    +     L +   ++
Sbjct: 525 LKLTGTPQAGDTFTVVDVKDPAYKLDIKLNSGNATALMKLRDKP--MFDGAVLTDGYASA 582

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           I  +      +      S  +  ++ +  +   GVNL EE + LI+ +Q+Y  S K+I  
Sbjct: 583 ISQIGIRTQSAGYAAEVSSSIAANLEKDRTAVSGVNLDEEAAKLIQFQQAYQASAKMIQI 642

Query: 468 TDKMLQTLLEGV 479
              +  TL++G+
Sbjct: 643 AQNIFDTLIQGL 654


>gi|90021849|ref|YP_527676.1| hypothetical protein Sde_2204 [Saccharophagus degradans 2-40]
 gi|89951449|gb|ABD81464.1| Flagellar hook-associated protein [Saccharophagus degradans 2-40]
          Length = 920

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 130/397 (32%), Gaps = 14/397 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            +   +      +    ++   NI NA+   Y R+  +   +             V V +
Sbjct: 4   DLLGISVTGLRASQSALSTTGHNISNANVDGYSRQRVIAETNPATRADGGYVGNGVNVAS 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     L   S+            +  + + +D+  N   +  +     ++++ 
Sbjct: 64  IERIVNSFVTTQLRTDSTLYSDLNTYHDLVSQLDNLLSDE--NTGLSGALGTFFAAVQNG 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   S   + + VI  +E +   FNT       I    ++ +++ ++        +  +N
Sbjct: 122 ADEPSSVPVRQLVISESENLASRFNTIHSRFAAIEESVEEGLQVAVAEANALAKNIADIN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +     S    +D LDQRD  + K+S+II I T  + N ++ V   +G  L       
Sbjct: 182 RKVAEAFGSGDKPNDLLDQRDETILKLSKIISIQTFTQGNGEVNVLIGNGQNLVVGDTAR 241

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 +    + +       G V      + V  G+I  LL+ RD+ +    N+   +A
Sbjct: 242 TLGLVDSEEDASKKDLTFTTGGSVQV--LTNIVSGGEIGGLLRFRDTAMTDTYNEFGRIA 299

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L  +F++    A   +N  G      + +      + I ++       R     + D 
Sbjct: 300 VTLADTFNKIHTQAITLDNEYGEDFFKSVNEPITAANRVIGDSNNSVATNRQMYLNIVDS 359

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
             +            G   +     ++   + I    
Sbjct: 360 TELEASAYEIEFQAGGRYTITRSSDNASVTSGILPGN 396



 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 109/409 (26%), Gaps = 25/409 (6%)

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
             S         +   ++E  SA         +       +    S+  +   + +T+  
Sbjct: 536 TDSGERLVNSGGAVIGIEEGRSAVVGTGGVLNNNYPSEVFTFTLPSQTQAGAAVTQTIYT 595

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                 +   +    V  +  +A   IEL    +         +N           D  +
Sbjct: 596 PPNASARELASLLSNVPGVSVNASNYIELSNFQVSYVEPLQLSLN---------GTDLLE 646

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
           +          +S  +    +  +  +  +           +  D +F +   Y V++  
Sbjct: 647 YEFDPITSTNVLSANVPDPAVNPDEFNNYI--------ESRINSDASFAQNGIYAVSATD 698

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
                  V + + +G  +    I A  +  D       N     A   + S         
Sbjct: 699 ELTGYSEVRIFATEGDNLQMDLIAAANESLDVGDGSNSNVRLTGAGAGVTSSI------- 751

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                           L     Q           +  N           K    +   L 
Sbjct: 752 -VSGGKFDIAMADGVSLTTFPPQSRLLGDTTAEDFAKNRYMGIQVNLSGKPQAGDSFTLD 810

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
              D       +     I         + +L E   + I  +  + S S      S+ V 
Sbjct: 811 FNIDGAMDNRSALALVAIQSSNLVQGKSASLSESYGSLIERVGIDTSSSRINMEASKQVL 870

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            H +   ++   VNL EE + LI+ EQ Y+ + ++I     +  TL+  
Sbjct: 871 EHTTAMRNSISAVNLDEEAANLIRFEQMYSANAQVISVARNLFDTLINS 919


>gi|114569239|ref|YP_755919.1| hypothetical protein Mmar10_0688 [Maricaulis maris MCS10]
 gi|114339701|gb|ABI64981.1| protein of unknown function DUF1078 domain protein [Maricaulis
           maris MCS10]
          Length = 461

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/488 (12%), Positives = 143/488 (29%), Gaps = 35/488 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVT 54
           MS+ +      +   + S   ASI  NI N +   Y R   + T       S +  +   
Sbjct: 1   MSINSALLAGASGLISNSNALASISDNIANVNTVGYKRASAVFTPLYDSDSSTKGYSAAG 60

Query: 55  QRSENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
             S  +       +L A SS        + F  +++  + +     S      +      
Sbjct: 61  VNSVARLAIGESGLLTAGSSPTDLAISGRGFFVVRDDANVNSSDPVSF-TRAGRFTPDTN 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y +N +   L    +     V QN +          +      E            +  
Sbjct: 120 GYLRNDAGKYLSGWPVAADGSVPQNPSDLNALETINLSSIGGAAEATT---------IMG 170

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  ++   A   D   +                ++   + +           TL  ++ 
Sbjct: 171 INANLQQSQAISADEATYDATASATNM---SSGTVTPDFQRSIPFYDSVGGVRTLTISML 227

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           +     + ++      +  +     +V     +       +  +   ++ +P   + L  
Sbjct: 228 KSSTPNQWHAEVHMVPATDLTTGAGLVDGQMLTGTVAFDAQGRIDSANTTLPTQLDFLSS 287

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                +G+   +   A   +                              QY S  + L 
Sbjct: 288 TNAAALGATEFQWAAATGIDAQSIALDFGSPNAPGG------------FTQYDSPSALLS 335

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              + S    ++  ++     +   + +   +     PVA       L   A++   +  
Sbjct: 336 TNVNGSAFGNFSSVDVDDDGFVFAKFNNGIVRKIYQIPVATFVNPDGLE--AQSGGTFTV 393

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S ++ L+         I+ S   +  V+L  E + LI  +++Y+ S+K+I   D+ML
Sbjct: 394 TPESGAYTLNPPGLGSSGQIAASTLESSNVDLANEFTSLITTQRAYSASSKIITTADEML 453

Query: 473 QTLLEGVK 480
              +   +
Sbjct: 454 DEAIRMKR 461


>gi|313106041|ref|ZP_07792300.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa
           39016]
 gi|310878802|gb|EFQ37396.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa
           39016]
          Length = 682

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +    +S     + + ++       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTT--TGVSPAMQRFFAALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S     + V+  AE + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 AAANNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D +D RD  ++K+SE+IG++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +       N    V  G++  LL  R+S +    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LAITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/444 (9%), Positives = 92/444 (20%), Gaps = 13/444 (2%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            R     +       V    S  +          +      +L Q    L + ++     
Sbjct: 252 TRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINKQLGQ 311

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                        +L     +     L       A+        +   +         + 
Sbjct: 312 GLDLAGKAG---ANLFGDINDPDITALRVL----AKNGNTGNVHANLNITDTSKLNSSDF 364

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            L+          L          + +      F D   +       +  +         
Sbjct: 365 RLDFDGTNFTARRLGDDASMQVTVSGTGPYTLSFKDANGIDQGFNLTLDQLPAAGDRFTL 424

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                                    + T ++  N         +   G +     +    
Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGAPTLTSGPSPVDPAVLQGA 484

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              + +        D     L            + +               N +    ++
Sbjct: 485 FGPNGISLGATLSADGKTYTLSSPLPAGWSY-VDKDGNALTGSPTLTSGNTNTVRMAFTD 543

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                  Y    S +       K    +         L     +              NT
Sbjct: 544 PSGQKYSYEFELSGVPQNSDSFKLGFNDKGISDNRNAL-----NLLALQTKPTVGGTDNT 598

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             T  E     +  +    +        S  V     +S  +  GV+L EE + LI+ +Q
Sbjct: 599 GSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLIQFQQ 658

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
            Y  S ++I     +  TL+   +
Sbjct: 659 YYGASAQVIQVARTLFDTLIGAFR 682


>gi|293605009|ref|ZP_06687405.1| flagellar hook-associated protein 1 [Achromobacter piechaudii ATCC
           43553]
 gi|292816614|gb|EFF75699.1| flagellar hook-associated protein 1 [Achromobacter piechaudii ATCC
           43553]
          Length = 557

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 137/429 (31%), Gaps = 18/429 (4%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58
            A    N A    A+   NI NA    Y R+  +T+ +             V V T    
Sbjct: 6   TALGGLNAAQAGLATTSHNINNATTVGYNRQRVLTSTAGAQATANGYIGRGVQVDTIERS 65

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +   K L     +  Q  L   F  + ++ +            ++    S+ + +   
Sbjct: 66  YDSFLYKQLVGAQGSGAQ--LQTQFAQVSQINNLFADRTVGIAPGLTDFFTSMNTVASKP 123

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           ++      ++  A  +     ++  E+Q +R   + +I   +  +  +L  +  +N  I 
Sbjct: 124 ADPAARADLLGKANSLTTQIRSAYSEMQNLREGLNTQISTTVEQVNSYLGRIDDLNTQIS 183

Query: 179 FK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                A+    +D LDQRD  + ++++++GI+T  + N   +  T  G +L         
Sbjct: 184 LAAGKANGSPPNDLLDQRDQAVMELNQLVGITTYEQGNKINISLTKGGQSLLSGTTLYPL 243

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSS----NQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               +S   +       +      +       S V  G +  LLQ R + +   QNQL +
Sbjct: 244 QAVPSSKDASRTVVAYTLPAGSGKTVAVEMPDSDVTGGSLGGLLQFRATSLDTLQNQLGQ 303

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  L  SF+E+     +    PG                  S           N    +
Sbjct: 304 MAVGLALSFNEQHKQGLDQNGNPGTDFFSIGSPTGVPNTANKSNAQITGQFTTLNNVNAK 363

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           D         + V  +     + N        N   +  A     +T+    +    W  
Sbjct: 364 DYEISFDGTNYQVLRMPEGARVYNGPATGTPPNATLNLDAEAGVTLTINAPPQAGDKWSL 423

Query: 413 KNRSDSHDL 421
               D+   
Sbjct: 424 SPTRDAARD 432


>gi|203287640|ref|YP_002222655.1| flagellar hook-associated protein [Borrelia recurrentis A1]
 gi|201084860|gb|ACH94434.1| flagellar hook-associated protein [Borrelia recurrentis A1]
          Length = 627

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 147/419 (35%), Gaps = 28/419 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S  +     +           ++  N+ NA    Y R+  +                   
Sbjct: 3   STFSGIEIGKKSLFAHKDAMNTVGHNLTNATKPGYSRQRIIMKTEMPIYAPQLNRANKAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + D  +   S  +G   L   F +L E +  ++    S    +
Sbjct: 63  QLGQGIMVQSIERIRDELLDIKIAEESHHLGYWNLKDRFISLLENVY-NEPEEQSMRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +    S +  SK          +++  +  V+   +    +++I   A+ EI++    + 
Sbjct: 122 NDFWASWQDLSKQPQGLAERNIILERGQAFVEVITSRFHSLERIYTMANDEIKITTEEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +L  ++ +N  I    A K   +D +D+RD+++ K+S +I IS   + + +  +   +G
Sbjct: 182 NYLRNISDLNKQIAKAIAMKGHPNDLMDERDLIIDKLSNLISISIENKRDPNEFLIHIEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    ++ N ++ +    + N       GK+ AL+ IRD+ + 
Sbjct: 242 KHLIQGTIANELILEAANGPTKTKWNILWNNRETANINT------GKLGALINIRDNEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICV 340
              N+LD +A  +    +E        +   G    +    L +   +  S        V
Sbjct: 296 NEINELDNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSV 355

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +    ++ + +     +    +   + +     +   Y  +     + D +   +  VT
Sbjct: 356 HIFKVNSTNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVT 414



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/331 (11%), Positives = 95/331 (28%), Gaps = 8/331 (2%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            +    I   ++ +      L   N  I F +     D     D           I  ++
Sbjct: 302 DNIAINIAELVNEVHISGYGLDKQNGRIFFEQEYKLTDDRGRYDSNGDGQFDSVHIFKVN 361

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           +    +    +  +           D      N+     +      +     + + +   
Sbjct: 362 STNEISPKEKLGFAGILRFQAINKNDFIEIPYNATDTVKDVIDKINNSDAQVTARINENK 421

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           K +IKA+ +            +++    L       +            +      D   
Sbjct: 422 KFEIKAVKEEDKDSTIFRIKHIEDSGLFLTNYTGILNASGI---EGAYNYQNINTTDQLT 478

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +     +     +      + +  S     +    N     D       +       
Sbjct: 479 NTTRYSISPLKNPSAWIRISKVIAEDPSKIASGIQTPTNNTPIGDNK----AALRIASFV 534

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           +    I  N TL +Y  N+   +      +       + +  ++++   +  GVN  EEL
Sbjct: 535 NSQIMIEKNSTLNDYFVNTASNIAIKGQIAEITKNSQEQILKNLTDLRLSISGVNKDEEL 594

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +I+ +QS+  ++K I  + +++ T++  +
Sbjct: 595 ANMIEFQQSFIAASKFINISAELIDTIINKM 625


>gi|94265700|ref|ZP_01289439.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453786|gb|EAT04158.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 875

 Score =  147 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 129/418 (30%), Gaps = 13/418 (3%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPEN 49
           MS +  V N A+               N+ N D   Y R+                    
Sbjct: 1   MSGITHVLNLAKQALLTHQSSIQVAGHNVANVDTPGYTRQKINIEANTAFPSAAGIMGGG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V       +      + +   SS +G     Q    + E +  ++    +    +++  +
Sbjct: 61  VLADGIARQYDQFMVERIAKQSSLMGNLEAQQQALRVVEPIF-NEARGLALNDLMNQFWN 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S +  S N       + V+ + + +  +  T + E+ + R+D    ++  I+++     +
Sbjct: 120 SWQELSDNPETLGARQNVLQHGQLLADHMGTMSSEIIRARSDIGTNLKSAINDINSISDQ 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I      + +A+D  D+RD L++++S ++ ++          V  +DG  L E
Sbjct: 180 IAQLNSKISTAEVGRAEANDLRDRRDNLVKELSTLVDVNHFADKRGAYSVMLTDGHPLVE 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +             +   ++S +      G ++   ++       +  +
Sbjct: 240 GDESWQVDWVDDQLHWIGTDATGRTNSRALNSEKLGGKIGGWLEIHGELAAGDPNNYAGR 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  LI   ++       +       +   +    +     ++           +  
Sbjct: 300 LDALANALIRELNQLHSSGVGTVRFDDELVGAELGAQTSVATGQVAANTANRNIPAGSIK 359

Query: 350 FLR-DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
               D G +      N +      + +N    +                V   + A +
Sbjct: 360 VNGLDIGQIRGAAPVNGRATEKAANAVNAINQADAGVTARLTTQVAGGEVDTTDLAED 417



 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 116/378 (30%), Gaps = 17/378 (4%)

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            +       +    +     LG    +   E              + +D    IE  + +
Sbjct: 515 NLHGFDADDDPMELDKLAKALGFEGQNIIGETHVADAQHNTGEITLFSDQSYTIEAGVDD 574

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                       D    +           D  D          G      + +  +    
Sbjct: 575 -NILAQLGLHDVDQRGDQRGDGQLRVVPGDGPDDAFLLNGFKHGEQLDTEDGSFSIWLYH 633

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           D  +L    P +++ E+  +    + +    I     + +  +  P   ++A    ++  
Sbjct: 634 DDGSLALPQPVEVSLERAYTARDAATAINNAIIEAGGTDDPEAEHPIPWLQAKFDPKEQR 693

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
             +  N   + A               +  +         +  L+       + TI +N 
Sbjct: 694 FTLTPNDGYQFALDGARQE--------DGTHGRDTSNFLQVAGLNTFFTGHSAGTIGINQ 745

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               + ++L      + +   + +  AG         +  +K    +         +L  
Sbjct: 746 TVADDLNYL-----AAGQVRDDGQVYAGDNTNALEISNLQHK---DNIKFEGGRTNSLNG 797

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +  + IG +             +++V N ++E      GV+L EE++ LIK + +Y  + 
Sbjct: 798 FYNSLIGDIGNKGRTIGRNLEFNELVLNQMNEMRDAVSGVSLDEEMANLIKFQHAYTAAA 857

Query: 463 KLIMFTDKMLQTLLEGVK 480
           ++I  +D+ML TLL+ V+
Sbjct: 858 RMISMSDEMLVTLLDTVR 875


>gi|54308103|ref|YP_129123.1| flagellar hook-associated protein FlgK [Photobacterium profundum
           SS9]
 gi|46912529|emb|CAG19321.1| hypothetical flagellar hook-associated protein FlgM [Photobacterium
           profundum SS9]
          Length = 626

 Score =  147 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 115/338 (34%), Gaps = 15/338 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V   
Sbjct: 3   FDLLNMGSQGLLTAQRQLNTTSHNINNVNTEGYSRQSVVQQTNDPIWWGGSQHGTGVHAA 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++ +      +      + M A+   +      +++  D++++
Sbjct: 63  EVRRGYDQFATNELNLTTTNLSYATEREGQLGRLDNMLAN--SSKKIPEDMNQWYDAVKA 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K VI+ A+ V    N S   + K + +A++ +   ++ +     EL  V
Sbjct: 121 MADSPNDLGSRKVVIEKAKLVASGLNDSYGTLAKQKNEANEVLSGTLNRVNDIGRELVDV 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           + A+    AS  D +D +D+   L+ ++S+   ++   +NN    V    G TL      
Sbjct: 181 HKALVKTPASGAD-NDLMDRHQNLINELSQYTKVTVTPKNNETFNVMIGSGHTLVSGTES 239

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                             I     +           GK+ AL Q RD  +    +++  +
Sbjct: 240 SELRMINGKPDPQQTQLAIVEGKALKPIRNDDI--GGKLAALFQYRDETLSQAMDEMGRI 297

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           A     S +E      +     G  +   + D  +   
Sbjct: 298 AIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDPASAAA 335



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 104/359 (28%), Gaps = 13/359 (3%)

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
           D   ++   F      + +   +  +       ++    S+   +N  +        +  
Sbjct: 271 DIGGKLAALFQYRDETLSQAMDEMGRIAIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDP 330

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                R  +    +  + +       +   +   +    F+     +     +  +V   
Sbjct: 331 ASAAARARIPAGSTADLKVYI----EDINQLKVGEYGLTFDGSQHTLTSPDGSRQSVVPS 386

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQNQLDEMARVLIGSFS 302
            NP       +     S +  G+  A+   RD        +        +         +
Sbjct: 387 GNPAAFSVDGLRIQMDSPIGIGERIAIRPTRDGAGNIKALLDDPAKIAAQSYLSSATKTN 446

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K  +  N    P  F      D        +   I  +PQ       +  GG+      
Sbjct: 447 GKADLVINGTGGPNEFQVAVSPDASQFAVLDMKGNILQDPQVYPPSGEVNVGGTRFTLSS 506

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVA---GINTNVTLLEYARNSIGWLEKNRSDSH 419
             +       +L     ++ N   + D  A     +   ++++        +   ++ + 
Sbjct: 507 GAMGGDVFAVNLNAADGNNGNLIKMQDLQAQKIMNDGRSSVIDVYEGLNTEMGVQKASAS 566

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L     V  +      +   GVN+ EE + ++K +Q+Y  S++++   +    TLL  
Sbjct: 567 RLKEVGLVEKDAAQSRVAEIGGVNMDEEAANMMKFQQAYMASSRIMSVANDTFDTLLNI 625


>gi|329890330|ref|ZP_08268673.1| flagellar hook-associated protein FlgK [Brevundimonas diminuta ATCC
           11568]
 gi|328845631|gb|EGF95195.1| flagellar hook-associated protein FlgK [Brevundimonas diminuta ATCC
           11568]
          Length = 735

 Score =  147 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 139/449 (30%), Gaps = 21/449 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL ++ N A +  N A  Q   +  N+ N +   YVR+               V +   
Sbjct: 1   MSLNSIMNIATSGMNAAQTQLRVVSDNVSNVNTPGYVRKIADQQSWASQGVGAGVEIARI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R              S+  G+Q +        + M  D   N+     I  +  +  + +
Sbjct: 61  RLATDRFLQAASLNASADAGRQTVRYELYDRIQSMFGDPGSNSGFFSQIDSVFAAFAASA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +N +     +  I   + +         ++Q +R DAD  I+  +      L ++  +N 
Sbjct: 121 ENATSGPARQDAIWKTQALFDEAARINSQIQSVREDADARIKSAVETANSLLEQIEKLNV 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I   T    D+      +  L+ ++S ++ +    R    + + T  G  L       +
Sbjct: 181 EIAKATVINADSSGAQTAQAALIDQLSGLMDVRITGRAVGGVEIRTGAGILLAGQGAAKL 240

Query: 236 NFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           ++ +  + +  +  N + +       + +    +  G+IK LL++RD   P    +L E+
Sbjct: 241 DYVRAGAVSAETVFNEVMVIEPPAGKARSLAEGLGSGEIKGLLELRDGEAPATAERLAEL 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------- 346
              L    +     +  +     L   +  + L+  L      T  V    +        
Sbjct: 301 MSRLADELNRAHNASSAAPPPNSLTGRNIGQSLETALQGFTGRTSIVITNDQGVALQKID 360

Query: 347 ----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 +       ++ +   N         L            + DP A  N       
Sbjct: 361 LDLATLNPATFLADLNAQLGANGSASFVDGRLKIEGAPGTGVVVVDDPAAPSNKGGRGFS 420

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
           +       +    S    ++       + 
Sbjct: 421 HFFGLNDLI---TSAQPAIYETGMTGASQ 446



 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%)

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
           ++L  YA    G +    + + +  + +  +    +    +  GVNL EEL  +   +Q+
Sbjct: 653 MSLARYASELSGEIGSRAAMAKNNAVSATALAKEATARRVSVEGVNLDEELVLMTTYQQA 712

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +N S +++     M   LL  V+
Sbjct: 713 FNASARMVQAAKDMYDILLGMVR 735


>gi|224534287|ref|ZP_03674865.1| flagellar hook-associated protein FlgK [Borrelia spielmanii A14S]
 gi|224514389|gb|EEF84705.1| flagellar hook-associated protein FlgK [Borrelia spielmanii A14S]
          Length = 627

 Score =  147 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 124/352 (35%), Gaps = 24/352 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +     +           ++  N+ NA    Y R+    T +               
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMTTTTPLYAPQLNRAKKQG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIMVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISMLEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S +  +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWQDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYTMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  +I +S   + + +  +  S+G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNLINVSIENKQDPNEFLIHSEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  + ++ +              GK+ +L+ IRD  + 
Sbjct: 242 RHLVQGSIANEFRLEATNGPTRTRWDILWTNNDKAHLKT------GKLGSLINIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              N+L+ +A  +I   +E        +   G         L +   +  + 
Sbjct: 296 NEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFSQELKLTDDRGRYDTN 347



 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/352 (11%), Positives = 104/352 (29%), Gaps = 22/352 (6%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK---------------HDA 187
            ++  +    D+EI+ EI+ L    + +  + + I                       D 
Sbjct: 281 GKLGSLINIRDEEIKNEINELNNLAANIIELVNEIHETGHGMDKKSGRSFFSQELKLTDD 340

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
               D           I  I++      +  +              +I     N+     
Sbjct: 341 RGRYDTNGNGQFDSVHIFKINSTNEIFLEEKLGFYGTLKFETINSSEIVEIPYNAPDTVQ 400

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           +      +     + + ++  K +IKA+ +  +  +      +++    L       +  
Sbjct: 401 DVINRINNSDAQVTARINSEGKLEIKAVKEHENENITFRIKHIEDSGLFLTKYTGILNAS 460

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                     +      D            +     +      +    S     + N  N
Sbjct: 461 G---PEGAYDYRNIDTTDKLTAKSTYSISPLKNPAAWIKVEDIIDSDPSKIASGIKNPTN 517

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                D       +   +   +    I  N+TL +Y  N+   +      S         
Sbjct: 518 EISIGDNQ----AAMRISSFGNSQVMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQ 573

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +   +++   +  GVN  EEL+ +I+ +Q++  ++K I  + +++ T++  +
Sbjct: 574 ILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSAELIDTVINKM 625


>gi|107100531|ref|ZP_01364449.1| hypothetical protein PaerPA_01001556 [Pseudomonas aeruginosa PACS2]
 gi|13183733|gb|AAK15324.1|AF332547_1 flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa]
          Length = 682

 Score =  147 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +    +S     + + ++       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTT--TGVSPAMQRFFAALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S     + V+  AE + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 AAANNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D +D RD  ++K+SE+IG++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +       N    V  G++  LL  R+S +    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LAITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/448 (10%), Positives = 97/448 (21%), Gaps = 21/448 (4%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            R     +       V    S  +          +      +L Q    L + ++     
Sbjct: 252 TRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINKQLGQ 311

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                        +L     +     L       A+        +   +         + 
Sbjct: 312 GLDLAGKAG---ANLFGDINDPDITALRVL----AKNGNTGNVHANLNITDTSKLNSSDF 364

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            L+          L          + +      F D   V       +  +         
Sbjct: 365 RLDFDGTNFTARRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFNLTLDQLPAAGDRFTL 424

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK--- 273
                                    + T ++  N         +   G +     +    
Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGAPTLTSGPSPVDPAVLQGA 484

Query: 274 -ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                I          +   ++  L   ++  D         P          L +    
Sbjct: 485 FGPNGISLGATLSADGKTYTLSSPLPAGWNYVDKDGNALSGSP---------TLTSGNTN 535

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +          + +  F   G   +        N  G  D  N   +            
Sbjct: 536 TVRMAFTDPSGQKYSYEFELSGVPQNSDSFKLGFNDKGISDNRNAL-NLLALQTKPTVGG 594

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
             NT  T  E     +  +    +        S  V     +S  +  GV+L EE + LI
Sbjct: 595 TDNTGSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLI 654

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +Q Y  S ++I     +  TL+   +
Sbjct: 655 QFQQYYGASAQVIQVARTLFDTLIGAFR 682


>gi|144899352|emb|CAM76216.1| Flagellar hook-associated protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 939

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 149/407 (36%), Gaps = 8/407 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M+L    N A +      +   ++ +N+ N + K YVR+               V V + 
Sbjct: 1   MALTLGLNTALSGLLTNQRALDTVAQNVTNVNTKGYVRKVMNQESRVLNGFGAGVQVGSV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +      K +   ++ +G+ ++  S+    + +  +   N+S +H ++ L ++ E   
Sbjct: 61  TRQINEGLLKDIRKQTAELGKLQVESSYYPRIDDLFGNVADNSSISHKLNDLYEAFELLG 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             + +  +  + +   ++V   F+    ++Q +R +AD+EIE  +  +   LS++  +N 
Sbjct: 121 TQVDKPSIQWSSVQTGQDVADLFDRMTDQLQSLRLEADREIETTVQLINDKLSDIHDLNQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I   +A      D  D+RD  L  +++ I +    R +  M+VYT+ G  L +   + +
Sbjct: 181 KIVKNSAVATGTTDLEDKRDQALTDLAQYIDVQYYHRQDGSMIVYTNSGEMLVDNQDQPL 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---KGKIKALLQIRDSVVPIFQNQLDE 292
           ++           +     + + V        P    GK++ALL +RD  V   Q  LDE
Sbjct: 241 SYTANTRIDTWMTAAGGQFNKISVDGGTDDLAPLVKGGKLRALLDMRDKTVTDLQASLDE 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A+ ++   ++      +  N    +          ++    ++T        +  +   
Sbjct: 301 AAQTMLEEVNKAHNRGTSYPNPSYRYEGSRTFAKQGQVVPNAADTAARFMFGSTTVTSAG 360

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                      N             +             A  ++N  
Sbjct: 361 YTSLSIAASGTNPWQTTMTASAGTPFSTMSAGTTFSVDSAEDSSNNG 407



 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/450 (10%), Positives = 112/450 (24%), Gaps = 25/450 (5%)

Query: 35  NYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD 94
            Y           + V  +   +++    D+     ++A G      +     +   A D
Sbjct: 509 GYSTASVNLNSEGKMVIDLGVTNKSLAFRDQ----TAAADGSAATDATISFDVDGDGAVD 564

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                  ++         S   ++ +  +  +    +            ++         
Sbjct: 565 QTVKGFANFFGLNDFFSNSNQNSIQDSNILPSTFKTSTTRDLKILDGTGQLGP------- 617

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
                       +   + + D      +                  ++    IS    + 
Sbjct: 618 ---------NMSIPAGSSLEDIADIINSYGRTTESAPLSLAQTTFTLTSAATISVTNTSG 668

Query: 215 NDMVVYTSDGTTLFETVPRDIN-----FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                    G    E +   +         +                 +  S  G A+  
Sbjct: 669 QVSTATVGPGAVTMEEIAGKLTSGTVVGSVIQDGDGYRLRLHSTAGAELTVSITGGAMAS 728

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G ++A L +            +     L    +E   +  +S             ++   
Sbjct: 729 GSLEASLGMNKVERVSASVIPEGSGYRLRVVQAENKEVFLSSTLDISNNNLLTELEMKPA 788

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
             +                   R     +        +       +       NK  +  
Sbjct: 789 ATRTAGTISVRADLMSGPEKMGRGAVQWNADLNGYYISEGDNSTALAMADAMGNKRAMQS 848

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                  N +L EY   +I  + ++   S         +   +    ++  GVNL EE+S
Sbjct: 849 AGGLYAGNYSLSEYGAATISLVTRDAEHSSKQLEYQTALSQSLDFQNTSFSGVNLDEEVS 908

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +I  +Q+Y+ + K+I    +ML+TL   +
Sbjct: 909 AMIDFQQAYSATAKVITVLQEMLETLTAMI 938


>gi|251772404|gb|EES52971.1| flagellar hook-associated protein FlgK [Leptospirillum
           ferrodiazotrophum]
          Length = 559

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/410 (10%), Positives = 116/410 (28%), Gaps = 13/410 (3%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPEN 49
           MS ++ V N  Q           +   N+ N +   Y R   M                 
Sbjct: 1   MSGIIGVMNIGQTGIEANEAALKTAGHNLSNVNTPGYSRERVMLEQHVPDMGHPGMMGAG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V     R    +  +       + +G     +      +            +  +S+  +
Sbjct: 61  VDAARIRRVVNHFLENQSTRQKTTLGFWESSRISLGEIDSYYFHAQSE-GLSRDLSRFFN 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E+ + + ++     T+I     + Q+F+       + R     +IE +++ +   ++ 
Sbjct: 120 HWETVANHPADRAARATLITYGHNLGQDFHQMTALYAESRNRLGHQIEDQVTKINARIAR 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           + V+N +I        D + FLD+R  +  ++S +         +  + ++   G   F 
Sbjct: 180 IAVLNHSILAARGRGEDPNTFLDERARIAGEVSRLTNAHFFHDKDGSLNLHI-GGQAAFS 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +                    +    V  G +   + +RD  +   Q+ 
Sbjct: 239 EQEVGHMAAIFDPVHDRYRITFAPPSHSGPPIDITDRVKGGVLGGYIDVRDHKIKSMQHH 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  +  S +             G+       ++     +G    +       +   
Sbjct: 299 LDLLAFQVANSVNSIHSRGYGLSGQTGVNFFKPTVEVVRTAGEGSGGVVANVEDASAVLP 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            +      +   +++ K+       +     +      +          +
Sbjct: 359 KILVESDAAGVRVYSAKDHLLIGSGVVKDGVATITAGGYALRVMAPKKGS 408



 Score = 87.0 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/411 (9%), Positives = 100/411 (24%), Gaps = 18/411 (4%)

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS---EDILGKTVIDNAE 132
                       E      +   +    ++    +     ++ +   ++        +  
Sbjct: 155 YAESRNRLGHQIEDQVTKINARIARIAVLNHSILAARGRGEDPNTFLDERARIAGEVSRL 214

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                F+     +           E E+ ++      +           +      D  D
Sbjct: 215 TNAHFFHDKDGSLNLHIGGQAAFSEQEVGHMAAIFDPVHDRYRITFAPPSHSGPPIDITD 274

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
           +       +   I +      +    +       L   V   +N      Y ++ ++   
Sbjct: 275 RV--KGGVLGGYIDVRDHKIKSMQHHLDL-----LAFQVANSVNSIHSRGYGLSGQTGVN 327

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
           F    V           G +  +      +  I         RV               +
Sbjct: 328 FFKPTVEVVRTAGEGSGGVVANVEDASAVLPKILVESDAAGVRVYSAKDHLLIGSGVVKD 387

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-----NPSFLRDGGSVSKKFLWNVKN 367
            V  +        +        S T+             + + L            +  +
Sbjct: 388 GVATITAGGYALRVMAPKKGSESYTVSGGTHVAGTALHLDVTNLSADDVAVADSPVSPGS 447

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
             G     +       K+  F    G +   ++ EY  + +  +      +         
Sbjct: 448 NEGDNANAHQIFYLSQKHLRFP---GEDEPASIYEYYASGVAKIGAWARQARLNDKAQVA 504

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +   +        GV++  E + +I+ E++Y  S  LI   +++L TL+  
Sbjct: 505 ISQSLETQRLAVSGVSIANESAKIIRFEKAYQASANLIQMVNRLLDTLVRL 555


>gi|73539456|ref|YP_299823.1| flagellar hook-associated protein FlgK [Ralstonia eutropha JMP134]
 gi|72122793|gb|AAZ64979.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134]
          Length = 631

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 125/371 (33%), Gaps = 14/371 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
           ++F+   +  N A     +   N  NA  + Y R++T+   +                 T
Sbjct: 2   SLFSIGLSGLNTAQNALTTTSHNFANAATEGYSRQNTIVASAGGQYTSQGFFGMGSNTTT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       L    SA              + + AD          + K   ++++ 
Sbjct: 62  VARVYDQFLTGQLRGAQSAGSALSTYSDQIGQIDNLLADQ--KGGLAPLMQKFFSAVQAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++    + ++   + +V    +++   +++++  +++I   +  +  +  +++ +N
Sbjct: 120 ADTPADPAARQGMLSAGQALVGQVRSASNYFKQLQSGVNEQIGTAVDQINSYSKQISNLN 179

Query: 175 DAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             I    A       +D LDQRD  + ++++++G   +V++     V+  +G  L     
Sbjct: 180 GEIAKLKALSGGQPPNDLLDQRDQAVSELTKLVGAKVVVQDGGTYNVFIGNGQPLVMGNE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   ++           + G  +  ++  A+  G +  LLQ R   +   QN +  
Sbjct: 240 SYDLKAVASAADPGRTVVAYTVPGGGLRESESGAITGGSLGGLLQFRSETLDSAQNSIGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           ++  +  +F+++  +  +     G  +               S  I       ++     
Sbjct: 300 LSLAIGQAFNDQHKLGMDMNGDIGTDMFKLGSATTLSNANNTSSAIAQATVTDASALTTS 359

Query: 353 DGGSVSKKFLW 363
           D         +
Sbjct: 360 DYTLEFDGTNY 370



 Score = 95.1 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/374 (6%), Positives = 82/374 (21%), Gaps = 6/374 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +Y+         ++       +       +  +   +    +                  
Sbjct: 258 AYTVPGGGLRESESGAITGGSLGGLLQFRSETLDSAQNSIGRLSLAIGQAFNDQHKLGMD 317

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I         A    +  +         +  ++ +  ++  + +      L     
Sbjct: 318 MNGDIGTDMFKLGSATTLSNANNTSSAIAQATVTDASALTTSDYTLEFDGTNYKLTRMSD 377

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           + +              +           +      +    +          I       
Sbjct: 378 KHVETFAPTDPIQFDGFSVQLNGTPSAHDSFLIQPTRNAAASFDMAISDPAKIAAAAPAG 437

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +        S    +   +     +                 +    + P   +      
Sbjct: 438 VDAGSTNQGSGTAALGSVAPGFTPMTGKIIATYDGTGYTFTDASGAAITPDSTAANGANT 497

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA------GINTNVTLLEYARN 406
           D       F +     AG    +     +   N     +A       I    +  +    
Sbjct: 498 DYTFGGLTFTFGGTPKAGDSFTLGSNAGAVKNNGNALALAKLQSAKTIGGVSSFNDAYAQ 557

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +                +   I+ +  +  GVN+ EE   +++ +Q Y  + ++I 
Sbjct: 558 LVNDVGTRAKSVQIASTSQDSITAQITAAQQSVSGVNMDEETVSMLRFQQMYQANARVIQ 617

Query: 467 FTDKMLQTLLEGVK 480
               +  T++   +
Sbjct: 618 AASTLFDTIIGIGR 631


>gi|254239444|ref|ZP_04932766.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           2192]
 gi|126192822|gb|EAZ56885.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           2192]
          Length = 682

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 59/409 (14%), Positives = 136/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +    +S     + + ++       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTT--TGVSPAMQRFFAALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S     + V+  AE + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 AAANNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVAS 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D +D RD  ++K+SE+IG++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +       N    V  G++  LL  R+S +    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQ--VQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LAITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  +        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTSFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/444 (9%), Positives = 92/444 (20%), Gaps = 13/444 (2%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            R     +       V    S  +          +      +L Q    L + ++     
Sbjct: 252 TRYQVQLSNGNSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQLAITLADTINKQLGQ 311

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                        +L     +     L       A+        +   +         + 
Sbjct: 312 GLDLAGKAG---ANLFGDINDPDITALRVL----AKNGNTGNVHANLNITDTSKLNSSDF 364

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            L+          L          + +      F D   V       +  +         
Sbjct: 365 RLDFDGTSFTARRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFNLTLDQLPAAGDRFTL 424

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                                    + T ++  N         +   G +     +    
Sbjct: 425 QPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGAPTLTSGPSPVDPTVLQGA 484

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              + +        D     L            + +               N +    ++
Sbjct: 485 FGPNGISLGATLSADGKTYTLSSPLPAGWSY-VDKDGNALTGSPTLTSGNTNTVRMAFTD 543

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                  Y    S +       K    +         L     +              NT
Sbjct: 544 PSGQKYSYEFELSGVPQNSDSFKLGFNDKGISDNRNAL-----NLLALQTKPTVGGTDNT 598

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             T  E     +  +    +        S  V     +S  +  GV+L EE + LI+ +Q
Sbjct: 599 GSTYNEAYGGLVERVGTLTAQVRASSEASATVLKQAQDSRDSLSGVSLDEEAANLIQFQQ 658

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
            Y  S ++I     +  TL+   +
Sbjct: 659 YYGASAQVIQVARTLFDTLIGAFR 682


>gi|103488393|ref|YP_617954.1| flagellar hook-associated protein [Sphingopyxis alaskensis RB2256]
 gi|98978470|gb|ABF54621.1| Flagellar hook-associated protein [Sphingopyxis alaskensis RB2256]
          Length = 441

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/491 (12%), Positives = 137/491 (27%), Gaps = 64/491 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +  +     +     S+  ++I  NI NA    Y RR                    SP 
Sbjct: 1   MSDLLGIGYSGLKAYSRALSTIGDNIANAQTPGYARRRLEMMEAVGGGNSIFYRGNTSPG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V +                  S    +      +    E   +D+   N     +++L 
Sbjct: 61  GVDIRGLDRSVDQWLIADSRLTSGDAERAAARLDWLGKVEGALSDET--NGIKTGLTRLF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + +  + + +   L    + + +++   F T+A ++  +           +      L 
Sbjct: 119 TTADQLTADPANRTLRAQFLQSVDDIASGFRTAADQLAGMSDGISGAATSAVGAFNANLE 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  +N  ++       +    LD+RD LL K+S   G+S    NN  + +  +    L 
Sbjct: 179 ALEQINIGLRKARPGSTNEASLLDERDRLLDKLSSQAGVSASFDNNGAVTLRAAGPGDLL 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                      +             + G  ++         G +  L +  + V    + 
Sbjct: 239 VGGGV---VTPIAVTAAPDGRLSYSVGGAPLAIAT------GSLAGLAEGANHVADQ-RA 288

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            LD MA       +       ++   PG  +  G             + +        N 
Sbjct: 289 ALDTMAADFAAQLNAAHQAGADANGNPGQPLFTGASAATLTAAPLTPDQVAAADASSGNG 348

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + L                                          +             +
Sbjct: 349 NML--------------------------------------AFGAMRGANDPEARWSGLM 370

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
               +  + +   H  +    +  + +      ++L  E + L++ +Q+Y+ + + I   
Sbjct: 371 ATQAQTVAAARAHHAAATTRADAAAAARDGVSQIDLDTEAAELLRYQQAYSAAARTIQVA 430

Query: 469 DKMLQTLLEGV 479
            + +QTLL  +
Sbjct: 431 RETMQTLLSSL 441


>gi|2494530|sp|Q56326|FLGE_TREPH RecName: Full=Flagellar hook protein flgE
 gi|439981|gb|AAA73467.1| flagellar hook polypeptide [Treponema phagedenis]
          Length = 463

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/491 (8%), Positives = 117/491 (23%), Gaps = 41/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56
           ++       +   N   +   I  N+ N +   + R                 R      
Sbjct: 1   MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVG 60

Query: 57  -------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   S          
Sbjct: 61  GVNPKEVGLGVMVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTTAGAFGV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N +  +  +  +   +   Q    ++ + + +     ++I+ + +    +   
Sbjct: 121 DRDGTLVNPANGMRVQGWMAE-DIEGQQIINTSDQTEDLIIPIGQKIDAKATTDVAYACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      +              +Q D+L    +    +       + + +  S       
Sbjct: 180 LDKRLPELPEG----------ANQADILRSTWATDFNVYDTFGEQHKLQMVFSRVPGTNN 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +N +  N     +       DG   +                   +   P  Q  
Sbjct: 230 QWLATVNVDPENQAGTETRVGIGTTDGTENTFIVSFDNYGHLASVTDTAGNVTAPAGQ-- 287

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                 VL+ +         +    P     +            I        Q+    +
Sbjct: 288 ------VLVQASYNVVGANPDEGGAPTRHTFNINLGEIGTSRNTI-------TQFAERST 334

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +   Y +  ++      +AG      L +   N   
Sbjct: 335 TKAYQQDGYAMGYLENFKIDQSGIITGVYSNGASREIGQLALAGFANQGGLEKAGEN--T 392

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ N S   ++ +   +    +         V+L ++ + +I  ++ +    K I  +D
Sbjct: 393 YIQSNNSGIANITVSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD 452

Query: 470 KMLQTLLEGVK 480
            ML+T+L   +
Sbjct: 453 TMLETVLNLKR 463


>gi|119899021|ref|YP_934234.1| flagellar hook-filament junction protein 1 [Azoarcus sp. BH72]
 gi|119671434|emb|CAL95347.1| flagellar hook-filament junction protein 1 [Azoarcus sp. BH72]
          Length = 663

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 147/425 (34%), Gaps = 15/425 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N      N A  Q  +   NI NA  + Y R+  + T +           +   V
Sbjct: 1   MAGLLNIGLTGLNAAQAQLLTTGHNITNAGVEGYHRQTVIQTSNTPQFTGVGFFGQGTQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +  +   S+ + +     S  +    + AD    +  +  +      ++
Sbjct: 61  SAVTRSYSQYLENQVLTSSARLSEFTAYNSQISQINNLLAD--STSGLSPVMEGFFAGVQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N +     +++I +A+ +V  F T    + +IR   + EI   ++ +  F   +  
Sbjct: 119 EMASNPTSVAARQSLISSAQALVSRFQTMDARLAEIRQGTEGEIASTVTQINMFAGAIAE 178

Query: 173 VNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N  I     +     A+D LDQRD L+ ++++++ ++T+  N+  M V+   G  L   
Sbjct: 179 MNQRIAQAQVAGPSVAANDLLDQRDQLVAELNKLVKVNTVTENDGSMSVFMGSGQGLVVG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      ++      +  +  +    +    + +  G +  LL  R   + + QN L
Sbjct: 239 GTVNQLAAVRDANDPQRSAIALMAENGAPTVLPENLLSGGTLGGLLGFRRESLDVAQNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  +  +F+ +  +  + + V G                  + +I    Q  +    
Sbjct: 299 GLIAVGIAEAFNAQHQLGVDLDGVLGGQFFSLPDPALKPAITSATVSIENYAQLTAADYM 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
           L   G+          ++     +   Y     N      P A   T   L++  RN+  
Sbjct: 359 LEWDGAAYSMRAVGGASIPLTLQVDGSYSGGGINIAISTPPPADFPTTGLLIQPTRNAAA 418

Query: 410 WLEKN 414
            +   
Sbjct: 419 NIGVA 423



 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 61/251 (24%), Gaps = 2/251 (0%)

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
               +I     +   + +        G    +          +       ++      + 
Sbjct: 415 NAAANIGVAITDPRKIAAGDPVSVAPGNYTGAVTDRIKGLKTLSVDGIDANADGKADFSP 474

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +         + S       ++     +         D+   +          +Y    +
Sbjct: 475 MTLSFAANTFTASAGTIERYDTATGTWVAGGAYNPATDSTGVRFRVTDGTAPNEYAFEFT 534

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +    S            AG  D  N       +        G     T        + 
Sbjct: 535 AVGAWASGESMVF--SPTAAGVADNRNAVALGALQTAKTMLNGGSGATATFQSVYAQMVT 592

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +     +        + +    +++     GVNL EE + L++ + +Y  + +++    
Sbjct: 593 QVGNKTREVQVNQAAQESLLTQATDARDALSGVNLDEEAANLVRYQMAYQSAARVMNVAQ 652

Query: 470 KMLQTLLEGVK 480
            +   LL   +
Sbjct: 653 TLFDELLAIGR 663


>gi|42528268|ref|NP_973366.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405]
 gi|4426943|gb|AAD20617.1| flagellar hook protein FlgE [Treponema denticola]
 gi|41819538|gb|AAS13285.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405]
          Length = 463

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/491 (9%), Positives = 123/491 (25%), Gaps = 41/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++           N   +   I  N+ N +   + R                 R   +  
Sbjct: 1   MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   +          
Sbjct: 61  GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E    N +  +  +  +   E        ++ + + +     ++++ + +    +   
Sbjct: 121 DKEGTLVNPANGMRVQGWMAE-EAEGFRIINTSGQTEDLNIPIGQKLDAKATTSVNYACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      +              ++  +L    S    +       +++ +  +       
Sbjct: 180 LDKRLPELPEG----------ANRAQILESTWSTEFKVYDSFGEAHELQIDFARVPGEVN 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +N +  N+    +       DGV  S         G + ++     +V       
Sbjct: 230 AWRATVNVDPTNADATATRVGIGTTDGVQNSF-IVRFDNNGHLASVTDTAGNVTSPAGQV 288

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L +++  ++G+         +    P     D            I        Q+    +
Sbjct: 289 LVQISYNVVGANP-------DEAGAPTRHTFDVNLGEIGTSKNTI-------TQFSDKST 334

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +   Y +   +      +AG      L +  +N   
Sbjct: 335 TKAYEQDGYTLGYLENFRIDQSGIITGVYSNGVRQEIGQIAMAGFANQGGLEKAGQN--T 392

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ N S   ++     V   +          V+L ++   +I  ++ +    K I  +D
Sbjct: 393 YVQSNNSGIANVSTSGTVGKGYFIGGTLEMSNVDLTDQFVDMIVTQKGFQAGAKTIQTSD 452

Query: 470 KMLQTLLEGVK 480
            ML+T+L   +
Sbjct: 453 TMLETVLNLKR 463


>gi|90411011|ref|ZP_01219025.1| flagellar hook-associated protein [Photobacterium profundum 3TCK]
 gi|90328224|gb|EAS44535.1| flagellar hook-associated protein [Photobacterium profundum 3TCK]
          Length = 626

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 116/338 (34%), Gaps = 15/338 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V   
Sbjct: 3   FDLLNMGSQGLLTAQRQLNTTSHNINNVNTEGYSRQSVVQQTNDPIWWGGSQHGTGVHAA 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++ +      +      + M A+   +      +++  D++++
Sbjct: 63  EVRRGYDQFATNELNLTTTNLSYATEREGQLGRLDNMLAN--SSKKIPEDMNQWHDAVKA 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K VI+ A+ V    N S   + K +++A++ +   ++ +     EL  V
Sbjct: 121 MADSPNDLGSRKVVIEKAKLVASGLNDSYGTLAKQKSEANEVLSGTLNRVNDIGRELVEV 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           + A+    AS  D +D +D+   L+ ++S+   ++   +NN    V    G TL      
Sbjct: 181 HKALVKTPASGAD-NDLMDRHQNLINELSQYTKVTVTPKNNETFNVMIGSGHTLVSGTES 239

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                             I     +           GK+ AL Q RD  +    +++  +
Sbjct: 240 SELRMINGKPDPQQTQLAIVEGKALKPIRNDDI--GGKLAALFQYRDETLSQTMDEMGRI 297

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           A     S +E      +     G  +   + D  +   
Sbjct: 298 AIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDPASAAA 335



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 98/359 (27%), Gaps = 13/359 (3%)

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
           D   ++   F      + +   +  +       ++    S+   +N  +        +  
Sbjct: 271 DIGGKLAALFQYRDETLSQTMDEMGRIAIGFSDSVNELQSQGLDLNGDVGGNLFHDVNDP 330

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                R  +    +  + +       +   +   +    F+     +     +  +V   
Sbjct: 331 ASAAARARVPAGSTADLKVYI----EDINQLKVGEYGLTFDGSQHTLTSPDGSRQSVVPS 386

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV------VPIFQNQLDEMARVLIGSFS 302
            NP       +     S +  G+  A+   RD        +        +         +
Sbjct: 387 GNPAAFSVDGLRIQMDSPIGIGERIAIRPTRDGAGNIKALLDDPAKIAAQSYLSSATKAN 446

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDGGSVSK 359
               +A N+   P  F      D        +   I   PQ        +      ++S 
Sbjct: 447 GNADLAINAAGGPNEFQVAVSPDASQFAVLDMKGNILQAPQVYPPSGEVNVGGTRFTLSS 506

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             +                 +      +       +   ++++        +   ++ + 
Sbjct: 507 GAMGGDVFAVNLNASDGDNGNLIKMQDLQSQKIMNDGRSSVIDVYEGLNTEMGVQKASAS 566

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L     V  +      +   GVN+ EE + ++K +Q+Y  S++++   +    TLL  
Sbjct: 567 RLKEVGLVEKDAAQSRVAEIAGVNMDEEAANMMKFQQAYMASSRIMSVANDTFDTLLNI 625


>gi|192361114|ref|YP_001982394.1| flagellar hook-associated protein 1 FlgK [Cellvibrio japonicus
           Ueda107]
 gi|190687279|gb|ACE84957.1| flagellar hook-associated protein 1 FlgK [Cellvibrio japonicus
           Ueda107]
          Length = 923

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/445 (12%), Positives = 143/445 (32%), Gaps = 26/445 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVT 51
           +  + + A +    +     +   NI NA+   Y R+  + +                VT
Sbjct: 1   MSGILSNAISGLQASQNALRTAGHNISNANTTGYTRQQVVYSTRPEQSAGAAGFVGSGVT 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             +      +     L   +S   Q        +  + + AD   +   +  +     +L
Sbjct: 61  TTSIERIVNDFVTAQLRLDTSTYNQLNTYNVNISKIDKLFADT--STGLSGGLQTFFAAL 118

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++ + + +     + ++     +   FN+  + +  I    + E++   S +      + 
Sbjct: 119 QNGANDPASTPARQLIVTEVNNLSVRFNSLYQRLADIEKSINGEVKTITSQMTALAKSIA 178

Query: 172 VVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N +I     +   +  +D +D+RD  L+++S ++ I  + + + D+ V+  +G  L  
Sbjct: 179 ELNQSIAEKRASGQGNMPNDLMDKRDEALRQLSGLVSIQVVNQGDGDVNVFIGNGQPLIV 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +          I +     +++  S +  G+I  LL  R+ V+   QN+
Sbjct: 239 GSQVSSFSVTNDGK--------IQLVSNGSAADITSQISGGQIGGLLSYRNEVLYPAQNE 290

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L  +A  +   F++      + +   G  +   I  LD    + +  +    P    + +
Sbjct: 291 LGRVALAISDQFNKMQQQGLDLDGDYGQPLFSDINTLDAMSSRIVHGSNNALPY---DRN 347

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                  V+   + + +                + + +           T+         
Sbjct: 348 LTLRIDDVNALGVNDYRFEIIPNTSNYLITRVGDNSVVAQGALTGAYPQTISFEGLTLSL 407

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISE 434
                +     +   ++     I  
Sbjct: 408 NSGSFQGGDSFVLQPTKYAARDIKS 432



 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/401 (10%), Positives = 103/401 (25%), Gaps = 3/401 (0%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
              +        +      +       +   +L S S  +S   L + +     +     
Sbjct: 526 TSNAVFTSDMGETLVVGKGSRLGLPAGREPQTLASLSNTMSNGYLAEQLRFTITDPTTGS 585

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
            ++        A A +      +         T  N        +       L      L
Sbjct: 586 VSTKTLTTVPGASAAQTAAQISTIPGVTARAFTTANITNIQLDNADFAPPTQLYVNGEPL 645

Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
            +             N + +   +    L + +  + N + +    V+S +    + G  
Sbjct: 646 IEYDAYGTGFQGDVPNPNTMGEAAFNDYLAQRINANPNLQTLGLRAVSSTNP---VTGAA 702

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
                 S+     I+ +    +S      +     +  L G+ +      G         
Sbjct: 703 ELQLVASSGVDLDIRLVASGTNSSSIDVNDGTGNPSVRLAGADTGAGEQQGIVVGGRIDI 762

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                  L+                +  +           +    +   +    +  N  
Sbjct: 763 TMGNGVRLNTSPSNSPLFGDSTASDFALSSYIGYQVYISGQPKAGDTFTVGFNTNGTNDN 822

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            ++     +       N  ++  +     +  +    S S      S+ +          
Sbjct: 823 RNALALVGLETAKTMQNGTMSFGDAYGKLVEEIGTRSSLSKINTEASKSLLEQTQSMRDG 882

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             GVNL EE + LI+ +Q Y  + ++I    ++  TLL  +
Sbjct: 883 ISGVNLDEEAADLIRFQQLYQANARVITVARELFDTLLNAL 923


>gi|254464969|ref|ZP_05078380.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I]
 gi|206685877|gb|EDZ46359.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I]
          Length = 435

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 60/488 (12%), Positives = 136/488 (27%), Gaps = 61/488 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M++ +  N   +  +  + + ASI  NI N+  + Y R  T       + S    +    
Sbjct: 1   MTISSSLNAGVSGLSANASRLASISDNIANSSTRGYKRVQTDFHSMVLSGSGGTYSAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYISKLRDSLE 112
           R+ N  + D+   L + ++A       +    +  +         +         R    
Sbjct: 61  RTTNVRLIDERGPLVSTNNATDLAVRGRGMLPVASITEVEAGGSPSMMLTSTGSFRTDSS 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y    S  +L          +      +A  ++ IR D ++      + +         
Sbjct: 121 GYLSTESGLVLMGWPAQADGTLPDVARDTADALEPIRIDLNRLSAEPTTEISLT----AN 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +  A     AS       +   D + +  SE + I+                       P
Sbjct: 177 LPAAETDPGASGDPVEQVVQYFDNMGR--SEELTITYTPS----------------VATP 218

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
              +     +  +   +    + G    +   SA   G ++++  +           +  
Sbjct: 219 PATSGTNEWTMQIVDSATGATVIGEYTLTFDDSAASAGTLQSVATLTGGAYDATAGSVTI 278

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    +                              G+        Q         
Sbjct: 279 NVAGGPVEIN-----------------------------IGVIGEQNGMSQLGDEFVPGT 309

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +    +    +    ++I  Y     K     P+A ++    +     +S  +  
Sbjct: 310 TEKDGTAVGSFVSVEVNASGEVIASYDSGDTKVIYKVPLADVSNINGMQAL--DSQTYKP 367

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + S +  L    +     I         V++  EL+ +IK +++Y+ + K+I   D+ML
Sbjct: 368 TDDSGAFYLWDAGEGPTGEILGYAQEESAVDVATELTDMIKTQRAYSSNAKVIQTVDEML 427

Query: 473 QTLLEGVK 480
           Q      +
Sbjct: 428 QETTNIKR 435


>gi|116049009|ref|YP_792189.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390556|ref|ZP_06880031.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAb1]
 gi|313106035|ref|ZP_07792294.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016]
 gi|115584230|gb|ABJ10245.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878796|gb|EFQ37390.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016]
          Length = 462

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/478 (9%), Positives = 111/478 (23%), Gaps = 23/478 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62
            FN   +    AS        NI NA    + +             + +    +     +
Sbjct: 2   SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         I     +              +                + +  + +   
Sbjct: 62  SDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +    ++     T                +L++    +     + +  +    + 
Sbjct: 122 LQGYAVGPNGQLQNGVVT----------------DLKVERANQAPQATSSIQQSYNLNST 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINFEKM 240
            K       D  D      S  +GI     N++ M  +           P   + ++   
Sbjct: 166 LKPPTVTPFDPSDAATYNSSSSLGIYDSQGNSHTMSQFFIKNEPDPNATPPIPENSWTMK 225

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 +  +P     +  +    ++     ++A                + +       
Sbjct: 226 VLIDGVNPLDPSNKTPMSFNVTFDASGQMTSVRAPDGSTSGPGFSIDATTNVIQFSPATG 285

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G        +       GIS  +    QY +  +           
Sbjct: 286 NPPTPGTGWIPAASDGKTPPTYAWNGATGAASGISFDMRKTTQYSTAFAQSNPIQDGYTT 345

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +  +K      +A       L    +    W++   S    
Sbjct: 346 GQLAGLEIDDTGVIFARYTNGQSKVQGQVVLANFANIQGLTPIGK--TSWVQSAESGEPA 403

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +          +         V++  EL  LI  +++Y  + K I   D + QT++  
Sbjct: 404 VGAPRSGTLGALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIINL 461


>gi|188534164|ref|YP_001907961.1| flagellar hook-associated protein FlgK [Erwinia tasmaniensis
           Et1/99]
 gi|188029206|emb|CAO97078.1| Flagellar hook-filament junction protein 1 [Erwinia tasmaniensis
           Et1/99]
          Length = 551

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/553 (14%), Positives = 168/553 (30%), Gaps = 79/553 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A    N AS    +   NI N     Y R+ T+   +              +V
Sbjct: 1   MANLINTAMTGLNAASAALNTTSNNITNYAVTGYSRQTTVLAQNSSTLSGSNYYGNGASV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                E      K L A S+            +  + M       N+ +  I     SL+
Sbjct: 61  SNVYREYDQFISKQLLAASTQSSAISTQAGQMSNIDDML--SGTTNTLSTNIQDFFKSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S N  +    + V+  AE +V     +   +  +    +  ++  +  +  +  ++  
Sbjct: 119 TLSSNAGDSSSRQAVLGKAEGLVNQLKVTDTYLTNLDNSLNVSVKSTVDQVNNYAKQIAN 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           VN  I       + ++ +D LDQRD L+ ++++++G++   ++     +   +G +L + 
Sbjct: 179 VNQQITKLKGVGAGNEPNDLLDQRDQLVSQLNKLVGVNVSQQDGGSFNISVGNGISLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
              +      +S      +   +       +    S V  G +  LL  R   +   +NQ
Sbjct: 239 DSYNQLAAVPSSADPGRTTIASVDSVTGAKTELPESLVTTGSLGGLLAFR-KDLDGVRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ----------------- 332
           + ++A  L  SF+ +     +S    G    +    +                       
Sbjct: 298 VGQLALALGSSFNTQHEAGLDSNGDKGEAFFNLGSPVATSNGNNKGDASLTVAYDADKID 357

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +  +         + + +R   +   K +          D +     +       D   
Sbjct: 358 NVKASNYKMTWDGGSWNVVRLSDNAQVKDVDASTPGTVKFDGLTITVGASGTLQNDDSYT 417

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN-------------- 438
                  +   + N     +   + S      ++ V + ++    +              
Sbjct: 418 IKPVTNVISGMSVNITDEAKLATAGSTGGASNNENVKSLLALQTKSLINGTSTLTQAYAG 477

Query: 439 --------------------------------TVGVNLQEELSFLIKVEQSYNISNKLIM 466
                                             GVNL EE S L + +Q Y  + K++ 
Sbjct: 478 LVADVGNKTSTLETTSTTQTAVVTQLTKQQQSVSGVNLDEEYSNLARYQQYYMANAKVLQ 537

Query: 467 FTDKMLQTLLEGV 479
               + Q+LL  V
Sbjct: 538 TASTIFQSLLTAV 550


>gi|195941912|ref|ZP_03087294.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 80a]
 gi|225549791|ref|ZP_03770755.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 118a]
 gi|225369599|gb|EEG99048.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 118a]
 gi|312149645|gb|ADQ29716.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi N40]
          Length = 627

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++  +    I   
Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311

Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      +   N    F    K  D     D           I  I++      +  
Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +          T   +I     N+     +      +     + + ++  K +IKA+ + 
Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +      +++    L       +            +      D            +
Sbjct: 432 EDENITFKIKHIEDSGLFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      +    S     + N  N     D       +   +   +    I  N+
Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y  N+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++
Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             ++K I  + +++ T++  +
Sbjct: 605 IAASKFITVSVELIDTVINKM 625


>gi|301051132|ref|ZP_07197963.1| flagellar hook-associated protein FlgK [Escherichia coli MS 185-1]
 gi|300297216|gb|EFJ53601.1| flagellar hook-associated protein FlgK [Escherichia coli MS 185-1]
          Length = 425

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     ++   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSTADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|224532827|ref|ZP_03673442.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi
           WI91-23]
 gi|224512216|gb|EEF82602.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi
           WI91-23]
          Length = 627

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++  +    I   
Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311

Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      +   N    F    K  D     D           I  I++      +  
Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +          T   +I     N+     +      +     + + ++  K +IKA+ + 
Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +      +++    L       +            +      D            +
Sbjct: 432 EDENITFKIKHIEDSGLFLTKYTGILNASG---PEGAYDYKNIDTTDKLTPKSTYSISPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      +    S     + N  N     D       +   +   +    I  N+
Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y  N+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++
Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             ++K I  + +++ T++  +
Sbjct: 605 IAASKFITVSVELIDTVINKM 625


>gi|119952979|ref|YP_945188.1| flagellar hook-associated protein FlgK [Borrelia turicatae 91E135]
 gi|119861750|gb|AAX17518.1| flagellar hook-associated protein 1 [Borrelia turicatae 91E135]
          Length = 627

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 149/419 (35%), Gaps = 28/419 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S  +     +           +I  N+ N     Y R+  +                   
Sbjct: 3   STFSGIEIGKKSLFAHKDAMNTIGHNLTNTSKPGYSRQRVIMKTEIPIYAPQLNRANKVG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +      ++ D  +   S  +G       F +L E +  ++    S    +
Sbjct: 63  QLGQGIMVQSIERVRDDLLDIKIAEESHRLGYWSSKDKFISLLENVY-NEPEEQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   DS +  SK          +++  +   +  +     +++I   A+ E+++    + 
Sbjct: 122 NDFWDSWQDLSKQPQGLAERNIILERGQSFAEVVSNRFHSLKRIYTMANDEVKITTEEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +L  ++ +N  I    A K   +D +D+RD+++ K+S +I IS   + + +  +   +G
Sbjct: 182 NYLRNISDLNRQIAKAIAMKDQPNDLMDERDLIVDKLSNLISISIENKRDPNEFLIYVEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    ++ N ++ +G   + N       GK+ AL+ +RD+ + 
Sbjct: 242 KHLIQGAIANEFILEAANGPTGTKWNVLWNNGEPANINT------GKLGALINVRDNEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN----KLCQGISETICV 340
              N++D MA  +    +E        +   G    D    L +        G  +   V
Sbjct: 296 NEINEIDNMAINITELVNEVHVSGHGLDQKNGRIFFDQEYKLTDERGRYDSNGDGQFDSV 355

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +    ++ + +    ++    +   + +     +   Y  +     + + +   N+ VT
Sbjct: 356 HIFKINSTNEIFPEENLGFSGILKFQAINKNDFIEIPYNTTDTVQDVINKINNSNSQVT 414



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/381 (11%), Positives = 105/381 (27%), Gaps = 11/381 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                            N   +            +    N    E+ +I   A   I   
Sbjct: 255 LEAANGPTGTKWNVLWNN--GEPANINTGKLGALINVRDNEIKNEINEIDNMA-INITEL 311

Query: 160 ISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      L   N  I F +     D     D           I  I++      +  
Sbjct: 312 VNEVHVSGHGLDQKNGRIFFDQEYKLTDERGRYDSNGDGQFDSVHIFKINSTNEIFPEEN 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +  S           D      N+     +      +     + + +A  K +IKA+ + 
Sbjct: 372 LGFSGILKFQAINKNDFIEIPYNTTDTVQDVINKINNSNSQVTARINAEGKFEIKAIKEE 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            +         +++    L       +            +      +            +
Sbjct: 432 ENDSAIFRIRYIEDSGLFLTTYTGILNASGT---EGAYNYQDVNTTNQLINTVSYSIAPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      + +  S     +    N A   D       +       +    I  N 
Sbjct: 489 KNPAAWLKVSREIAEDPSKIASGIKTPTNNAPIGDNK----AALRIASFVNSQIMIGKNA 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y  N+   +      +       + +  ++++   +  GVN  EEL+ +I+ +QS+
Sbjct: 545 TLNDYFANTASNIAIKGQTAEITKNSQEQILKNLTDLRLSISGVNKDEELANMIEFQQSF 604

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             ++K I  + +++ T++  +
Sbjct: 605 IAASKFITVSAELIDTIINKM 625


>gi|313620048|gb|EFR91563.1| flagellar hook-associated protein FlgK [Listeria innocua FSL
           S4-378]
          Length = 506

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNAALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTIAADTDAAIQDLNTLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  +S   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVGGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G  +          Y ++ +             W +            +      +    
Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNAENKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           N +SES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATFTADTQALNSLSESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|256829395|ref|YP_003158123.1| hypothetical protein Dbac_1614 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578571|gb|ACU89707.1| protein of unknown function DUF1078 domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 513

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/516 (10%), Positives = 131/516 (25%), Gaps = 39/516 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----ENVTVVTQR 56
           MS+ +             +  A I  NI N     +     +          + +V  Q 
Sbjct: 1   MSISSSLYIGTTGIMAQQKNMAVISDNIANVSTVGFKSSHMIFNTLMSQQMGSASVSNQV 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESY 114
            +   +   +      A+             +         +S          R   E Y
Sbjct: 61  GQGVGVSSILYDMSLGALEPTNTATDISISGKGFFIVSPNGSSDQHYTRAGNFRFDAEGY 120

Query: 115 SKNLSEDILGKTVI---DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            ++   +IL    +      +        ++  +  IR D        +S          
Sbjct: 121 LRDPQGNILQGYRMPAESILDTAPVIPPAASAPITDIRLDMQDGGGP-VSEPEATTEMRM 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG------- 224
           ++N     +  S      F    D       E +        +   +  +  G       
Sbjct: 180 MINLDSSSQERSTSTTSPFTALFDSWDATQPEPLDAGAYSYQSAMKIYDSDGGAHEVRAY 239

Query: 225 ----TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                        +  +E + +   T +++ +     V+ +   +    G++  +     
Sbjct: 240 FDPVQDGASVPSGNRMWEFLVTIPPTQDASGLDTKKGVLMTGTLTFTASGELLNMSAFEG 299

Query: 281 SVVPIFQNQLDEM----------------ARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           S           +                          +                 G  
Sbjct: 300 SSDDKNSWVPVNLSEDGYPVLNVNLVGAEPISSALDMGLRSNSGWALPAGVNTLADLGTA 359

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             D    Q     I     + S  S L    +  ++      ++     L+ ++ +  N+
Sbjct: 360 ISDLPSLQNADRQILSITNFNSGSSTLYQSQNGYERGFLQSVSVDTAGVLVGYFSNGQNQ 419

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                P+A       L     N         S +  +    +     +  S      V+L
Sbjct: 420 GLYKIPMADFINPQGLFREGGNLFS--ATKDSGAVSVGWAGEGRLGSVITSSLENSNVDL 477

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             E   +I  ++ ++ ++K+I   D+++QT ++  +
Sbjct: 478 ATEFVNMIITQKGFDANSKVITTGDQVVQTAIQMKR 513


>gi|15596283|ref|NP_249777.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa
           PAO1]
 gi|218892950|ref|YP_002441819.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa
           LESB58]
 gi|9947002|gb|AAG04475.1|AE004539_17 flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           PAO1]
 gi|218773178|emb|CAW28990.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           LESB58]
          Length = 683

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQDAIQQTRIPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +             + AD       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELNAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + ++N S     + V+  A+ + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D LD RD  ++K+SE++G++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +     + N    V  G++  LL  RD+V+    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A     + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 112/434 (25%), Gaps = 20/434 (4%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                  +     + +    +  +M     + +       +KL     +++ +     LG
Sbjct: 252 TRYQVQLTLGDSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQLALTFA-DTVNKQLG 310

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           + +    +     F               K       +    +++ + +N +        
Sbjct: 311 QGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTSKLNSSDFRLDFDG 370

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS-- 242
            +        D    +++        +   +   V      TL +       F    +  
Sbjct: 371 TNFTA-RRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFSVTLDQLPAAGDRFTLQPTRR 429

Query: 243 -----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                 T    ++ +   G   +    +    G I     +            +      
Sbjct: 430 GASDIETTLKNASQLAFAGSARAEATTNNRGSGAIGQPNLVDGPSPIDPAVLQNAFGANG 489

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNK--------LCQGISETICVNPQYRSNPS 349
           +   +              L       D D               +          S  +
Sbjct: 490 LPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSGQT 549

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYARN 406
           +  +    +     +   L+   D I    ++ N N +          +T  T  +    
Sbjct: 550 YTYEFNLSNVPQTGDSFTLSFNKDGIADNRNALNLNALQTKPTVGGTDSTGSTYNDAYGG 609

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +    + +      SQ V     +S  +  GV+L EE + LI+ +Q Y+ S ++I 
Sbjct: 610 LVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQVIQ 669

Query: 467 FTDKMLQTLLEGVK 480
               +  TL+   +
Sbjct: 670 VARSLFDTLIGAFR 683


>gi|313624689|gb|EFR94646.1| flagellar hook-associated protein FlgK [Listeria innocua FSL
           J1-023]
          Length = 506

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNAALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTIVADTDAAIQDLNTLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  +S   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQTNPNDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G  +          Y ++ +             W +            +      +    
Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNAENKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           N +SES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|254234222|ref|ZP_04927545.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           C3719]
 gi|126166153|gb|EAZ51664.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           C3719]
          Length = 683

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQDAIQQTRIPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +             + AD       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELNAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + ++N S     + V+  A+ + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D LD RD  ++K+SE++G++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +     + N    V  G++  LL  RD+V+    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A     + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 20/434 (4%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                  +     + +    +  +M     + +       +KL     +++ +     LG
Sbjct: 252 TRYQVQLTLGDSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQLALTFA-DTVNKQLG 310

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           + +    +     F               K       +    +++ + +N +        
Sbjct: 311 QGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTSKLNSSDFRLDFDG 370

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS-- 242
            +        D    +++        +   +   V      TL +       F    +  
Sbjct: 371 TNFTA-RRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFSVTLDQLPAAGDRFTLQPTRR 429

Query: 243 -----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                 T    ++ +   G   +    +    G I     +            +      
Sbjct: 430 GASDIETTLKNASQLAFAGSARAEATTNNRGSGAIGQPNLVGGPSPIDPAVLQNAFGANG 489

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNK--------LCQGISETICVNPQYRSNPS 349
           +   +              L       D D               +          S  +
Sbjct: 490 LPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSGQT 549

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYARN 406
           +  +    +     +   L+   D I+   ++ N N +          +T  T  +    
Sbjct: 550 YTYEFNLSNVPQTGDSFTLSFNKDGISDNRNALNLNALQTKPTVGGTGSTGSTYNDAYGG 609

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +    + +      SQ V     +S  +  GV+L EE + LI+ +Q Y+ S ++I 
Sbjct: 610 LVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQVIQ 669

Query: 467 FTDKMLQTLLEGVK 480
               +  TL+   +
Sbjct: 670 VARSLFDTLIGAFR 683


>gi|15596277|ref|NP_249771.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1]
 gi|107100525|ref|ZP_01364443.1| hypothetical protein PaerPA_01001550 [Pseudomonas aeruginosa PACS2]
 gi|218892956|ref|YP_002441825.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58]
 gi|254234216|ref|ZP_04927539.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719]
 gi|254239438|ref|ZP_04932760.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192]
 gi|9946996|gb|AAG04469.1|AE004539_11 flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1]
 gi|126166147|gb|EAZ51658.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719]
 gi|126192816|gb|EAZ56879.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192]
 gi|218773184|emb|CAW28996.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58]
          Length = 462

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/478 (9%), Positives = 112/478 (23%), Gaps = 23/478 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62
            FN   +    AS        NI NA    + +             + +    +     +
Sbjct: 2   SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         I     +              +                + +  + +   
Sbjct: 62  SDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +    ++     T                +L++    +     + +  +    + 
Sbjct: 122 LQGYAVGPNGQLQNGVVT----------------DLKVERANQAPQATSSIQQSYNLNST 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINFEKM 240
            K       D  D      S  +GI     N++ M  +           P   + ++   
Sbjct: 166 LKPPTVTPFDPSDAATYNSSSSLGIYDSQGNSHTMSQFFIKNEPDPNATPPIPENSWTMK 225

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 +  +P     +  +    ++     ++A                + +       
Sbjct: 226 VLIDGVNPLDPSNKTPMSFNVTFDASGQMTSVRAPDGSTSGPGFSIDATTNVIQFSPATG 285

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G        +       GIS  +    QY +  +           
Sbjct: 286 NPPTPGTGWIPAASDGKTPPTYAWNGATGAASGISFDMRKTTQYSTAFAQSNPIQDGYTT 345

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +  +K      +A       L    +    W++ + S    
Sbjct: 346 GQLAGLEIDDTGVIFARYTNGQSKVQGQVVLANFANIQGLTPIGK--TSWVQSSESGEPA 403

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +          +         V++  EL  LI  +++Y  + K I   D + QT++  
Sbjct: 404 VGAPRSGTLGALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIINL 461


>gi|283833624|ref|ZP_06353365.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC
           29220]
 gi|291071307|gb|EFE09416.1| flagellar hook-associated protein FlgK [Citrobacter youngae ATCC
           29220]
          Length = 550

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 129/406 (31%), Gaps = 14/406 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E  +     L A  +            +  + + +    +   +  +     SL+
Sbjct: 61  SGVQREYDSFITNQLRAAQNQSSGLTTRYEQMSKIDNLLSSKTSSI--STSMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  A+ +V  F T+ + ++      +  I+  +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFRTTDQYLRDQDKQVNTAIKASVDQINNYSKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   V++     V  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNVTMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  LL  R   +   +N L
Sbjct: 239 SNARQLAAVPSSDDPSRTTVAYVDGVAGAVEIPEKLLNTGSLGGLLTFRSQELDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G    D          +             S+   
Sbjct: 299 GQLALAFADAFNTQHKEGFDANGDKGGNFFDIGSPAVLSNTKNQGTGSLDVKMTDSSAVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
             D   V     W V  LA                   +   G   
Sbjct: 359 ATDYKIVFDGTDWQVTRLADNTSFKATVTGGKMSFDGMEITVGAGA 404


>gi|325474542|gb|EGC77728.1| flagellar hook protein FlgE [Treponema denticola F0402]
          Length = 463

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/491 (9%), Positives = 123/491 (25%), Gaps = 41/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++           N   +   I  N+ N +   + R                 R   +  
Sbjct: 1   MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   +          
Sbjct: 61  GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E    N +  +  +  +   E        ++ + + +     ++++ + +    +   
Sbjct: 121 DKEGTLVNPANGMRVQGWMAE-EADGFRIINTSGQTEDLNIPIGQKLDAKATTSVNYACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      +              ++  +L    S    +       +++ +  +       
Sbjct: 180 LDKRLPELPEG----------ANRAQILESTWSTEFKVYDSFGEAHELQIDFARVPGEVN 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +N +  N+    +       DGV  S         G + ++     +V       
Sbjct: 230 AWQATVNVDPTNADATATRVGIGTTDGVQNSF-IVRFDNNGHLASVTDTAGNVTSPAGQV 288

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L +++  ++G+         +    P     D            I        Q+    +
Sbjct: 289 LVQISYNVVGANP-------DEAGAPTRHTFDVNLGEIGTSKNTI-------TQFSDKST 334

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +   Y +   +      +AG      L +  +N   
Sbjct: 335 TKAYEQDGYTLGYLENFRIDQSGIITGVYSNGVRQEIGQIAMAGFANQGGLEKAGQN--T 392

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ N S   ++     V   +          V+L ++   +I  ++ +    K I  +D
Sbjct: 393 YVQSNNSGIANVSTSGTVGKGYFIGGTLEMSNVDLTDQFVDMIVTQKGFQAGAKTIQTSD 452

Query: 470 KMLQTLLEGVK 480
            ML+T+L   +
Sbjct: 453 TMLETVLNLKR 463


>gi|15594526|ref|NP_212315.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi B31]
 gi|216264299|ref|ZP_03436291.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 156a]
 gi|221217529|ref|ZP_03588999.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 72a]
 gi|223889273|ref|ZP_03623861.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 64b]
 gi|226321499|ref|ZP_03797025.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi Bol26]
 gi|3915691|sp|P70859|FLGK_BORBU RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|2688082|gb|AAC66579.1| flagellar hook-associated protein (flgK) [Borrelia burgdorferi B31]
 gi|215980772|gb|EEC21579.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 156a]
 gi|221192592|gb|EEE18809.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 72a]
 gi|223885306|gb|EEF56408.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 64b]
 gi|226232688|gb|EEH31441.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi Bol26]
 gi|312148243|gb|ADQ30902.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi JD1]
          Length = 627

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++  +    I   
Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311

Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      +   N    F    K  D     D           I  I++      +  
Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +          T   +I     N+     +      +     + + ++  K +IKA+ + 
Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +      +++    L       +            +      D            +
Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      +    S     + N  N     D       +   +   +    I  N+
Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y  N+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++
Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             ++K I  + +++ T++  +
Sbjct: 605 IAASKFITVSVELIDTVINKM 625


>gi|171059406|ref|YP_001791755.1| flagellar hook-associated protein FlgK [Leptothrix cholodnii SP-6]
 gi|170776851|gb|ACB34990.1| flagellar hook-associated protein FlgK [Leptothrix cholodnii SP-6]
          Length = 640

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 122/337 (36%), Gaps = 13/337 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS   + N        +  Q  +   NI NA+   Y R+DT+ T               V
Sbjct: 1   MSTSTLLNLGTRAMFASQAQLQTTGHNIANANVAGYSRQDTVLTTVGGQYSGAGYYGRGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T            +    +            +  +                +KL ++
Sbjct: 61  AVQTVTRAVSAFQTDQVAQTRAQAAADSTRSDMLSRLQDSFGT--GEAGLGFAATKLFNA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
               + + ++    + V+  +EE+   F  S+ +++ ++    +++   ++ +      +
Sbjct: 119 FSDVASSPADPSARQVVLARSEELASRFRASSDQIEALQLSVTEDVGNTVNTINGLAQSV 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I     S  + +D LDQRD L+ ++S+ + ++ + +++  + ++   G +L   
Sbjct: 179 AELNQQIASTRGSGQEPNDLLDQRDQLVNELSQHVQVTRLEQDDGSLNLFIGGGQSLVLG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   + + +        + + GV    +Q S +  G +  L+  +++ +   ++QL
Sbjct: 239 NAAYEMVARADRFDPARVEVAVKVAGVERPFDQQS-LGGGTLAGLIGFQNNDLSAARDQL 297

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            ++A  L    + +  +  +     G  +   +    
Sbjct: 298 GQLASTLASEVNRQQSLGLSLGGTAGDPLFRHVAANA 334



 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/477 (9%), Positives = 115/477 (24%), Gaps = 35/477 (7%)

Query: 31  ADNKNYVRRDT------MTTISPENVTVVTQRSENKNMFDKVLH-AHSSAIGQQRLLQSF 83
            +  N + +        + +             +   + +++      + + Q     + 
Sbjct: 168 VNTINGLAQSVAELNQQIASTRGSGQEPNDLLDQRDQLVNELSQHVQVTRLEQDDGSLNL 227

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQNFNTSA 142
                      +          +   +    +  ++               +        
Sbjct: 228 FIGGGQSLVLGNAAYEMVARADRFDPARVEVAVKVAGVERPFDQQSLGGGTLAGLIGFQN 287

Query: 143 REVQKIRADADKEIELEISNLRRFLS---------------------ELTVVNDAIKFKT 181
            ++   R    +      S + R  S                          N +     
Sbjct: 288 NDLSAARDQLGQLASTLASEVNRQQSLGLSLGGTAGDPLFRHVAANAVPAAGNASDAAGN 347

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            + + A    D R +   +    +                S G  +          +  +
Sbjct: 348 PAGNVALTITDSRALQASEYELSVNADGSFDVLRRSDGQRSAGL-VNGAEVDGFRIDFGS 406

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S  +  +   +   G    S + +      I A   I  +  P  Q      + V+  + 
Sbjct: 407 SAPLAGDRFLLQPVGGAAQSIELALTDPKGIAAASPISVTAAPSNQGTGRLNSVVIETAA 466

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +        +            + LD+      S T       R +   ++  G  ++  
Sbjct: 467 ATPYGSMTLAFGATSAGGGRDYQLLDSGGSLLSSGTWSAGTPIRYDGVAIKIDGVPAEAD 526

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
            + V      P       +             +    T       ++  +      +   
Sbjct: 527 TFAVG-----PTTFAASSNGNALALQGLADTAMTLGQTFTNSYAQTLSDIGVRVQSAQSA 581

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              S  V +   E      GVNL EE + L++ +Q+Y  + K++    K+  T+L  
Sbjct: 582 ATVSAGVADRAKEELGAQTGVNLDEEAARLLQYQQAYQAAAKILQTAQKVFDTVLSL 638


>gi|124516723|gb|EAY58231.1| Flagellar hook-associated protein FlgK [Leptospirillum rubarum]
          Length = 561

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 109/353 (30%), Gaps = 13/353 (3%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS +L + N  ++         ++  +NI N +   Y   +     S             
Sbjct: 1   MSGVLGILNIGKSGIEANEAGLSTAGQNISNVNTPGYTVENVQFDQSQPNHGSPGMVGNG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V     R    +  D  +    + +G     +   +  +        N   +  IS+   
Sbjct: 61  VRATGIRRVVNSFLDAQMIRQKTRMGFWESSRLSLSELDTYFTH-AQNQGLSKDISRYLS 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + E  + +  +     T+I   + + ++F+  A    + R    + +   +S +   LS+
Sbjct: 120 TWEVVANHPLDRSARATLITYGKNLAEDFHQMASLYSQTRNRLGELLTSSVSTVNADLSK 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I    A     +  +DQR  L+ +IS +         N  + ++   G     
Sbjct: 180 IAHLNREILRAEAGGESPNTLIDQRQQLMVQISTLTNAHFFTDKNGAITLHL-GGQAAIT 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +         +S                   +    +  GKI   L +RD  VP+ +  
Sbjct: 239 DIDSGRLEAVFDSSRNGFRILIHPPGHSGPPIDITDRIHGGKIGGYLDVRDKKVPLLEEH 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           LD +A  LI   +                       ++ +       T+  N 
Sbjct: 299 LDSLAHGLINHVNALHVQGYGLNGKTNQNFFLPTTTVEAQGSLPPGVTLTANA 351


>gi|225548519|ref|ZP_03769567.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 94a]
 gi|225370782|gb|EEH00217.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi 94a]
          Length = 627

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 138/457 (30%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +   +    +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRSRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++  +    I   
Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311

Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      +   N    F    K  D     D           I  I++      +  
Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +          T   +I     N+     +      +     + + ++  K +IKA+ + 
Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +      +++    L       +            +      D            +
Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      +    S     + N  N     D       +   +   +    I  N+
Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y  N+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++
Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             ++K I  + +++ T++  +
Sbjct: 605 IAASKFITVSVELIDTVINKM 625


>gi|218249283|ref|YP_002374709.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi ZS7]
 gi|218164471|gb|ACK74532.1| flagellar hook-associated protein FlgK [Borrelia burgdorferi ZS7]
          Length = 627

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWTNNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 11/381 (2%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++  +    I   
Sbjct: 255 LEATNGPTRTRWNILWTNNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311

Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      +   N    F    K  D     D           I  I++      +  
Sbjct: 312 VNEIHEAGRGMDKKNGRSFFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +          T   +I     N+     +      +     + + ++  K +IKA+ + 
Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +      +++    L       +            +      D            +
Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      +    S     + N  N     D       +   +   +    I  N+
Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y  N+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++
Sbjct: 545 TLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             ++K I  + +++ T++  +
Sbjct: 605 IAASKFITVSVELIDTVINKM 625


>gi|104782843|ref|YP_609341.1| flagellar hook protein FlgE [Pseudomonas entomophila L48]
 gi|95111830|emb|CAK16554.1| flagellar hook protein FlgE [Pseudomonas entomophila L48]
          Length = 463

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/477 (10%), Positives = 120/477 (25%), Gaps = 20/477 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----RSENKN 61
            FN   +    A++Q      NI N +   +                +            
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVNTNGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           + +         +     +       +         +         + + +++       
Sbjct: 62  LANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSDNGSLSYSRAGAFQTNKDNFVVTSDGL 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A+   +       +++   +    +    I       S    +   +   T
Sbjct: 122 RLQGYA---ADANGKIQKGVLTDLKIDTSALAPKSTTLIDQGINLNSSALDIPLQVWDAT 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A+                  S+           N+ V+      T           +  N
Sbjct: 179 ATPPAMVPNKPFDPTDRTTYSDSFPTKVYDSQGNEHVMEQFYRKTGTNEWTMYTLVDGRN 238

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            +T  + +      G    +   +  P G +K +      V      Q +      I S 
Sbjct: 239 PFTPGAAAPA----GTTPLTGTINFNPDGSVKNMSTAATGVPTTPAGQFEWSVTNNIFSM 294

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
               P A ++             +       G+  ++     Y +  + +          
Sbjct: 295 KGWVPAAKDAAGN-------WASNGAVGNADGMRLSMNSTTSYNTATARMSQSQDGYATG 347

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
           + +  ++     +   + +  ++      +A       L +       W E   S    +
Sbjct: 348 ILSNLSIDSTGVMFASFSNQQSRAIGQVAIASFANPQGLQQIGG--TRWKESFASGIPGI 405

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +  +      VNL +EL  LIK + +Y  + K I     ++QT+++ 
Sbjct: 406 DAPKTGTLGSVESNSLEASNVNLTQELVELIKAQSNYQANAKTISTESTIMQTIIQM 462


>gi|241765797|ref|ZP_04763738.1| flagellar hook-associated protein FlgK [Acidovorax delafieldii 2AN]
 gi|241364308|gb|EER59458.1| flagellar hook-associated protein FlgK [Acidovorax delafieldii 2AN]
          Length = 664

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/466 (10%), Positives = 132/466 (28%), Gaps = 30/466 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N +   Y R+  +               + V V T
Sbjct: 2   SLLNVGARALLANQVALQTAGHNIANVNTPGYSRQTVVLQTVQGQFTGGGYIGQGVDVQT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +  +   A  S               + +             I+ + +S    
Sbjct: 62  ILRNQSELLTRQAAAAGSTQSADATRAERLRQLQEVF--SGGATGLGAAINDMMNSFSDV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + ++       +   +E      +++  V +I+    +++   I+ +    S++  VN
Sbjct: 120 VSSPTDLTARTVALTRIDETAARMRSASDRVNEIQYTVTEQLGSSITAINSLASQIASVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           + I     +    +D LD RD L++ I++ +  + I  ++  + ++ +    L       
Sbjct: 180 EQIARAKGNGQTPNDLLDHRDQLIRDINQYVQTTQIPADDGTVGLFVAGSQPLVLGTNAT 239

Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                       S    ++ +  G        + +  G +  LL+  ++ +   +N L  
Sbjct: 240 PLSVGDAQDFPGSGQLKLYFNPPGATPIEIDENMLGGGSVSGLLRFNNTDLAEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  +  + + +  +    +   G  +      +          TI      + +P+   
Sbjct: 300 MALAIGTTMNYQQTLGLTLDGAAGKPLFATPASVQGSTAGSAVGTIDFTDPTKFSPTQFA 359

Query: 353 DG---------GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                      G   +    +      +  +        +        AG      L + 
Sbjct: 360 ASDYEVRYDAAGVGGQVVRLSDGKATAFASVGALAATQIDGLTFNFTTAGAANERVLFKP 419

Query: 404 ARNSIGWLEK-------NRSDSHDLHMKSQVVFNHISESYSNTVGV 442
             ++ G ++          + +             +  S     GV
Sbjct: 420 FASAAGNIQALVYSPRDLAAANPVNAAMGTANAGTLQLSQLKATGV 465



 Score = 86.2 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 1/206 (0%)

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           L Q++ + VP     +           +    I       P        +          
Sbjct: 457 LSQLKATGVPTPPGLVLPPNGDTATPPAFPGGIQLRFNAGPPATYDVLNRGSSPATTVAT 516

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP-VAG 393
           ++          +   +   G+       NV N         +  ++ N + +       
Sbjct: 517 AQPYTPGAPISIDGWQITLQGTPKSGDTVNVGNALDPQYGDYYTRNAGNASALMGLRDVK 576

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +  N TL +    +I  +      +      S  +  ++    +   GVNL EE + LI+
Sbjct: 577 MFDNATLSDGYAGAIAQVGTRTQSASFAANLSTTIAANLERDRTAVSGVNLDEEAAKLIQ 636

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q+Y  S K++     +   L++ V
Sbjct: 637 FQQAYQASAKMLQIAQNIFDNLIQTV 662


>gi|1518046|gb|AAB62740.1| FlgK protein [Borrelia burgdorferi]
          Length = 616

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/457 (11%), Positives = 137/457 (29%), Gaps = 29/457 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    +  N ++ +              GK+ +LL IRD  + 
Sbjct: 242 RHLVQGSIANEFKLEATNGPTRTRWNILWANNDKAYLKT------GKLGSLLNIRDEEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N+L+ +A  +I   +E        +   G         L +   +  +         
Sbjct: 296 NEINELNNIAANIIEIVNEIHEAGRGMDKKNGRSSFSQELKLTDDRGRYDTNGNGQF--- 352

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +    S ++ F        G         +   +     P    +    +    
Sbjct: 353 --DSVHIFKINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSN 410

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                 +            + +         +    G
Sbjct: 411 AQVTARINSEGKLEIKAVKEQEDENITFKIKHIEDSG 447



 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 96/362 (26%), Gaps = 11/362 (3%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   R        N  +  L    +     +         E+ ++  +    I   
Sbjct: 255 LEATNGPTRTRWNILWANNDKAYLKTGKL--GSLLNIRDEEIKNEINEL-NNIAANIIEI 311

Query: 160 ISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++ +      +   N    F    K  D     D           I  I++      +  
Sbjct: 312 VNEIHEAGRGMDKKNGRSSFSQELKLTDDRGRYDTNGNGQFDSVHIFKINSTNEIFPEEK 371

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +          T   +I     N+     +      +     + + ++  K +IKA+ + 
Sbjct: 372 LGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTARINSEGKLEIKAVKEQ 431

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +      +++    L       +            +      D            +
Sbjct: 432 EDENITFKIKHIEDSGSFLTKYTGILNASG---PEGAYDYKNIDTTDKLAPKSTYSISPL 488

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                +      +    S     + N  N     D       +   +   +    I  N+
Sbjct: 489 KNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AALRISSFGNSQIMIGKNL 544

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           TL +Y RN+   +      S         +   +++   +  GVN  EEL+ +I+ +Q++
Sbjct: 545 TLNDYFRNTRSNIRIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAF 604

Query: 459 NI 460
             
Sbjct: 605 IA 606


>gi|152985192|ref|YP_001349650.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PA7]
 gi|150960350|gb|ABR82375.1| flagellar hook protein [Pseudomonas aeruginosa PA7]
          Length = 462

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 112/478 (23%), Gaps = 23/478 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62
            FN   +    AS        NI NA    + +             + +    +     +
Sbjct: 2   SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D               +              +                + +  + +   
Sbjct: 62  SDISQMFKQGNFETTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +    ++     T                +L++    +     + +  +    + 
Sbjct: 122 LQGYAVGPNGQLQNGVVT----------------DLKVERANQAPKATSSIQQSYNLDST 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINFEKM 240
            K       D  D      S  +GI     N + M  +           P   + ++   
Sbjct: 166 KKPPTVTPFDPSDASTYTSSSSLGIYDSQGNAHTMSQFFIKNEPNPNATPPIPENSWTMK 225

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 +  +P     +  + +  ++     ++A                + +       
Sbjct: 226 VLIDGVNPLDPSNKTPMSFNVSFDASGQMTSVRAPDGSTAGPGFSIDPATNVIQFSAASG 285

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G        +       GI+  +  + QY +  +           
Sbjct: 286 NPPTPGTGWIPAASDGKTPPTYAWNGATGSASGITFDMRKSTQYSTAFAQSNPIQDGYTT 345

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +  +K      +A       L    +    W++ + S    
Sbjct: 346 GQLAGLEIDETGVVFARYTNGQSKVQGQVVLANFANIQGLTPIGK--TSWVQSSESGEPA 403

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +          +         V++  EL  LI  +++Y  + K I   D + QT++  
Sbjct: 404 VGAPRSGTLGALQSGALEASNVDISSELVNLIVHQRNYQANAKTIQTEDAVTQTIINL 461


>gi|183220587|ref|YP_001838583.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910695|ref|YP_001962250.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775371|gb|ABZ93672.1| Endoflagellar hook protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779009|gb|ABZ97307.1| Flagellar hook protein FlgE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 464

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 119/491 (24%), Gaps = 40/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           ++       +   N   +   I  NI N +   +                          
Sbjct: 1   MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELQGASEPNERIG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T   Q      +          A+             E        +            
Sbjct: 61  GTNPKQVGLGSLIAAIDKIMTQGALQTTGKNTDLAVSGEGFFVVKDGDKQFYTRAGAFNV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               +  N +  +  +      +E    +  SA  ++ I      +     +    F S 
Sbjct: 121 DKNGFYVNPANGLKVQGWNSRLDESGNKYINSAGSLEDIVIPLYSKEPARATQNVDFQSN 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L     A+      +       D      +     I +   + N   M V          
Sbjct: 181 LNASVAAVPPDATEEDIQRYINDPDPRQRRGHVTSINVYDELGNTRQMGVEFYK----MR 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                + F+  ++  V+ + N    +   VS N    V       ++ + D V      +
Sbjct: 237 ENVWKMRFKLEDASQVSVDVNGTGGENTSVSGNTELEVSFTPDGKIISVSDGVDSQTTGK 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L                            I          L  G +  +    Q+ S+ +
Sbjct: 297 LKA---------------------DISFRIPGNPSAQKFSLNLGEAGLVGGITQFSSDFT 335

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                            ++     +   + +   +      +A       L +       
Sbjct: 336 TKAVKQDGYPMGYMESFSIDNTGTVTGVFSNGVRQPLARVALANFTNPAGLNKEGDTMYS 395

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +     S   ++          I+        V+L ++ + +I  ++ +  +++ I+ +D
Sbjct: 396 F--SLNSGEANIGEAGSQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTIVTSD 453

Query: 470 KMLQTLLEGVK 480
           +M+Q +L   +
Sbjct: 454 QMIQEVLGLKR 464


>gi|238764397|ref|ZP_04625347.1| hypothetical protein ykris0001_37640 [Yersinia kristensenii ATCC
           33638]
 gi|238697423|gb|EEP90190.1| hypothetical protein ykris0001_37640 [Yersinia kristensenii ATCC
           33638]
          Length = 338

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 126/331 (38%), Gaps = 13/331 (3%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56
            N A +  + A    +++  NI N     Y R++T+   +             V V    
Sbjct: 1   MNTAMSGLSAAQYALSTVSNNISNFQVAGYNRQNTVFAQNGGTLSPAGFIGNGVAVTGVN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            E        L A  +            +  + + ++   +N+ +  +    ++L++   
Sbjct: 61  REYNAFITNQLRASQTQSSGLTTYYQQISQIDNLLSNT--SNNISTTMQDFFNNLQNLVS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +D   KTV+  AE +V  F  + + ++ +    +++I    + +  +  ++  +ND 
Sbjct: 119 NAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDNGVNQKISDSAAQINNYAEQIAKLNDQ 178

Query: 177 IKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           I     +S  + +  LDQRD L+ ++++I+ ++   ++ +   V  + G +L +      
Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVAVTVTQQDGDAYNVSFAGGLSLVQGPNAYK 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +S   T  +               S +  G +   L+ R   +   +NQL ++A 
Sbjct: 239 VEAIPSSADATRLTLGYKHGTSDTIEIDESRLTSGSLGGTLKFRSEALDSARNQLGQLAL 298

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
           V+  SF+ +     ++    G       K  
Sbjct: 299 VMADSFNTQHKAGFDANGDEGKDFFSFAKPS 329


>gi|82702459|ref|YP_412025.1| flagellar hook-associated protein FlgK [Nitrosospira multiformis
           ATCC 25196]
 gi|82410524|gb|ABB74633.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 638

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/442 (14%), Positives = 149/442 (33%), Gaps = 20/442 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   +F    +    A +       NI N     Y R+  + + S           + V
Sbjct: 1   MS-NGIFGIGLSALQAAQRGLLVTGHNISNTATPGYTRQQVIQSTSDARATGSGFIGQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T +        + +    +   Q     S     + + AD    +  +  +     S
Sbjct: 60  QVDTVKRAYNQFLSRQVAQAGTESSQLETYFSQMKQIDSLLADSMGGSGLSPALQDFFGS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+  + N +E    ++++ NAE +V+ F++   ++ +I+   +++IE   + +    +++
Sbjct: 120 LQEMATNPAEVASRQSMLSNAEMLVRQFHSMNSQLNEIQEGVNRQIENSTALINTLGAQI 179

Query: 171 TVVNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N+ I      A+   A+D  DQRD L+ ++++ +  + + +++    V+   G  L 
Sbjct: 180 AKLNETIHMAESSANGQPANDLRDQRDELVAQLNDEVRATVV-QSDEGYSVFLGGGQPLV 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                     + ++           + G  +   + +     K+  LLQ R+ ++   +N
Sbjct: 239 MGSQASQLTARPSAMDADRLEIIHVMGGSSIPLKEANLDGG-KLGGLLQFRNEIIDTVRN 297

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG-----ISETICVNPQ 343
            L  +A  L G+F+E+  +  +++   G         +     +      I   I     
Sbjct: 298 GLGRVAIGLAGTFNEQHRLGQDAQGNLGGDFFTTPGPVVAASTENTGSAVIDAEIVSYRD 357

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
              +   L   G+                                        +  L+  
Sbjct: 358 LDVSDYRLSFDGANYTLQPIRNGVEGTVQTFTTFPQTVDGVRLNLASGTVAAGDEFLIRP 417

Query: 404 ARNSIGWLEKNRSDSHDLHMKS 425
                G +  +  D+  +   +
Sbjct: 418 TAKGAGQIAVSVQDTDKIAAAA 439



 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/450 (9%), Positives = 109/450 (24%), Gaps = 14/450 (3%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             S         R +   +  ++     + + Q     S               +  T  
Sbjct: 190 ESSANGQPANDLRDQRDELVAQLNDEVRATVVQSDEGYSVFLGGGQPLVMGSQASQLTAR 249

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            S +    LE         I  K    +  ++          +  +R    +        
Sbjct: 250 PSAMDADRLEIIHVMGGSSIPLKEANLDGGKLGGLLQFRNEIIDTVRNGLGRVAIGLAGT 309

Query: 163 LRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                 L +    N    F T          +     +   +EI+    +  ++  +   
Sbjct: 310 FNEQHRLGQDAQGNLGGDFFTTPGPVVAASTENTGSAVID-AEIVSYRDLDVSDYRLSFD 368

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-----SAVPKGKIKAL 275
            ++ T        +   +   ++  T +   + +    V++        +A   G+I   
Sbjct: 369 GANYTLQPIRNGVEGTVQTFTTFPQTVDGVRLNLASGTVAAGDEFLIRPTAKGAGQIAVS 428

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF-----IADGIKDLDNKL 330
           +Q  D +      +                 +       P L              D   
Sbjct: 429 VQDTDKIAAAAPIRTSAPTTNTGTGRISAGTVNAPLPTDPNLQQAVTLTFTSATTFDVSG 488

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               +                            +  ++    D +    ++     +   
Sbjct: 489 TGTGNPASVPFTAGGPITFNGWTVQITGTPQPGDTFSIGPNTDGVADNRNALLLGALQSS 548

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
                   +        +  +     +          +         +  GVNL EE + 
Sbjct: 549 NTLAAGGASYRGAYGQLVSLMGNKTRELEVTAGAQAALLTQTRALQQSEAGVNLDEEAAN 608

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L++ +Q+Y  ++K+I   ++M   LLE  +
Sbjct: 609 LLRYQQAYQAASKVIQTANQMFDALLEITR 638


>gi|150390478|ref|YP_001320527.1| hypothetical protein Amet_2716 [Alkaliphilus metalliredigens QYMF]
 gi|149950340|gb|ABR48868.1| protein of unknown function DUF1078 domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 441

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/481 (7%), Positives = 115/481 (23%), Gaps = 43/481 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +  +I  NI N +   Y                       + +
Sbjct: 1   MMRSMFSAVSGLQAHQLRMDAIGNNIANVNTVGYKGTRVTF----------------QEV 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F + +    +  G                  +         ++ +         +     
Sbjct: 45  FSQTIRGAGAPQG-------------GRGGTNPQQVGLGVNVASMST--FHVRGSAESTG 89

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               ++ N +      + +  +        + E++   + +     +  + N        
Sbjct: 90  YNTDLMINGDGFFIVSSDANDQNHTYTRAGNFELDEAGNLI-TPGGQRVMGNMYDVESGR 148

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                      + +    +S  + ++          V+              +       
Sbjct: 149 MGTGLQGLQISKSMTSPPMSTGVPLTDPQDATIPKSVFFGGNLNSDVQPNATL------P 202

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  + +  +G    +   +     ++     IR + V   +N+             
Sbjct: 203 VLDEFLEDLVDAEGKSSVARDTTFTVYDELGGTHDIRLAFVKTEENKYGVYVVENGVITD 262

Query: 303 EKDPIAGNSENVPGLFIA---DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             D      +           +     +       +       Q  +      D     K
Sbjct: 263 RIDHELEFEQGKLSDGTDLVLELTGLGNGASDFTFTVDFGAVTQVSNESDVSADVRVGYK 322

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +       +     +   + + + +      +A       L +   N   +     S   
Sbjct: 323 QGNLEDFTIDSSGVITGVFNNGYKRPIGQVAIANFRNPAGLEKIGENM--YRNSPNSGEP 380

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +          ++        V+L  E + +I  ++ +  ++++I  +D+MLQ ++   
Sbjct: 381 LVGTPGSGGRGTLNPGTLEMSNVDLSREFTNMITTQRGFQANSRIITTSDEMLQEVVNMK 440

Query: 480 K 480
           +
Sbjct: 441 R 441


>gi|16799788|ref|NP_470056.1| flagellar hook-associated protein FlgK [Listeria innocua Clip11262]
 gi|16413165|emb|CAC95945.1| lin0713 [Listeria innocua Clip11262]
          Length = 506

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNAALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  +S   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G  +          Y ++ +             W +            +      +    
Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNAENKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           N +SES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|220917708|ref|YP_002493012.1| flagellar hook-associated protein FlgK [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955562|gb|ACL65946.1| flagellar hook-associated protein FlgK [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 469

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/463 (14%), Positives = 149/463 (32%), Gaps = 35/463 (7%)

Query: 26  RNIENADNKNYVRRDTMTTIS-----------PENVTVVTQRSENKNMFDKVLHAHSSAI 74
            N++NA+   Y R+  +   +               T+           +  L A     
Sbjct: 27  HNLQNANTPGYARQRAVLATTLPAQQAGGAWIGRGATLAQVTQARDRFLEAQLPAAQGRA 86

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
            +     S     +++  D      P   +  L  SL   S+  S+  L +  +  A  +
Sbjct: 87  ARSAAASSLLGAVQVL--DPEAEGGPGEALGGLYASLTELSQAPSDPGLRQAAVAAARTL 144

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK-HDAHDFLDQ 193
             + N + + ++  RA AD  I   +S+     +E+  +N  I+   A    + +D LD 
Sbjct: 145 ALSLNRARQGLEDARAGADARIAAGLSDANALAAEVAALNRDIRAARAVGAGEPNDLLDA 204

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           R   + +++E+ G +    +  D+ +    G+ L   +       +          +   
Sbjct: 205 RQRSVDRLAELTGATPAATSEGDVSLLLPGGSALVAGLSASTLLPQPGP-------DGHL 257

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
              +          P G++  L+      +      LD++A  +    +         + 
Sbjct: 258 SVQLATGGVCADVAPGGELGGLVDASSGPLKDAITALDQLAWAVGNQLNSVHRAGWGLDG 317

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G  + D          +             ++PS L      +        +      
Sbjct: 318 GTGRDLLDVGATAAGAARRIAVS-----AAVAADPSRLA-----TASAAGQPGDAGNVLA 367

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           L+             D +AG++    L        G              +   +  H++
Sbjct: 368 LLATSTTRIATGQGSDLLAGLDATGAL----SRITGTFGAAARGLAASAAQDAGLAGHLA 423

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +  GV++ EEL  + K +++Y+  +K+I  + +M  TLL
Sbjct: 424 TMRESASGVSVDEELLEMEKAQRAYDAISKVIQASSEMFDTLL 466


>gi|289548122|ref|YP_003473110.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484]
 gi|289181739|gb|ADC88983.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484]
          Length = 454

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/491 (11%), Positives = 116/491 (23%), Gaps = 50/491 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV----TQRSE 58
           +L  F  A    N           N+ N +   +     +      +VTV     T   +
Sbjct: 1   MLRSFFNAVTGLNAYRTWMDITSDNLANVNTIGFKASRPIFQDVISSVTVGLNTVTNTIK 60

Query: 59  NKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDS 110
                  VL   +          Q  +          +    D            + R S
Sbjct: 61  TTTYGAGVLIDSTQKIWTIGNFKQTGINTDLAIQGRGLFILKDPISGAHYYTRDGEFRLS 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            + +  N +   L    +D          T    ++ I+    +        +       
Sbjct: 121 RDGFMVNSAGLKLQGFRVDENG------RTVGTGLEDIKV-VPQLEPKPTGVINFL---- 169

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
                      A+  +  +  +  D         + I   +       +Y          
Sbjct: 170 -----QPSNLNATATEPPNPFNPLDPSSYNYRYTLTIYDSLGTPYQADMYFRK------- 217

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                    + +         I  +      +    V       L+    +V+   Q   
Sbjct: 218 -------TNLPNQWEIHLRADIDPNSPGYELSGDWTVTFDSYGKLIYDNATVLREPQGSN 270

Query: 291 DEMARVLIG-SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                     S     P  G   +     I  G          G         Q+ S+  
Sbjct: 271 FAYYLNPANLSVPASTPSGGTFPSASVWRIYVGTSLQSGAPNPGQPIPTSFVTQHASDFV 330

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                   ++  L +V  L+    ++  Y +  +       VA  +    L++   N   
Sbjct: 331 VTASQNGYARGDLVDVYVLSEDGAVVGVYSNGKSLPLYRVAVAVFSDPEELIKKGANLYT 390

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +                    +         V++  E   LI  +++Y  + K I  T+
Sbjct: 391 SISTPTVMVP-------GGAEKVRSGMLEMSNVDIATEFVNLISAQRAYQANAKTITATN 443

Query: 470 KMLQTLLEGVK 480
            +L   +  V+
Sbjct: 444 AVLDETVNLVR 454


>gi|197104256|ref|YP_002129633.1| flagellar hook-associated protein [Phenylobacterium zucineum HLK1]
 gi|196477676|gb|ACG77204.1| flagellar hook-associated protein [Phenylobacterium zucineum HLK1]
          Length = 700

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 125/424 (29%), Gaps = 11/424 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55
           MSL      A +  N A     ++  NI N +   YVR+  +            V V   
Sbjct: 1   MSLNVTLQTAASGLNAAQASLRAVSDNIANVNTPGYVRKAVVQQPLVVDGVGMGVRVQGM 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +    +         +S   +   +  +    + +  D          + ++  +  + +
Sbjct: 61  KRITDDYLQSASLTAASDSSRWAAVAQYLDNAQSLFGDPSSPGFFFSRLDEIYGAFATAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +L    I N ++ +   +    ++ ++    +  I  +I      L+++  +N 
Sbjct: 121 DDPSSSLLRSQSIANIQDFLAEADRINSQLSELGGTVETRITADIDRANDLLAQVDRLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        DA    + +  LL ++S ++ +    R    + V +++G  L        
Sbjct: 181 EISRAKMVNADASGSENIQSQLLDELSSLMNVRVARRAEGGVTVRSTEGVLLAGEGGSAT 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +  T    S      G          +  G+I+ L+ +RD  +P  Q+QL E   
Sbjct: 241 LSYVRSDSTPGYISAKPSGGGTDAQPI---QIASGEIRGLMDLRDQELPKLQDQLGEFLT 297

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +   +     +          +      LD     G            +N   +R   
Sbjct: 298 RAVDQLNAAHNASVAYP--APSTLTGRNTGLDLPTAVGGFSGATTLAVMDANGVLVRRVD 355

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKN 414
                   +             +  + N        A       ++     N++   E  
Sbjct: 356 VDFTAGTMSANGGPAVAFTPGTFLATLNTQLGGQATASFTGGTLSIAGAGANTLAVDEGT 415

Query: 415 RSDS 418
              +
Sbjct: 416 SQKA 419



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 107/386 (27%), Gaps = 9/386 (2%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           +        +     +      + +  ++ +  +D     +      A         A  
Sbjct: 323 NTGLDLPTAVGGFSGATTLAVMDANGVLVRRVDVDFTAGTMSANGGPAVAFTPGTFLATL 382

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
             +L       F      +  A     A          +       +++++  +     +
Sbjct: 383 NTQLGGQATASFTGGTLSIAGAGANTLAVDEGTSQKAGRGFSHFFGLNDLVRSNGFTNYD 442

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
             +      G T  + +   ++          +   P       + +   S+     +  
Sbjct: 443 TGLRPTDPHGFTAGDPITLRLSSPDGLPLRDITIPVPAGTQMSDLVNALNSSATGVGLYG 502

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
              +       FQ      A+V + + + +    G S +      A    +         
Sbjct: 503 SFSLDAQGALTFQGAPPTNAQVSVVTDNTQRGAGGPSISQLFGLGAVERSNRAG------ 556

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                V+    ++P+ L  G               G          + +    F     +
Sbjct: 557 --RFQVDGTLDADPTRLALGKLDFSGGFTLPAIRPGDGRGALALSQAGDVATRFQAAGSL 614

Query: 395 N-TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              N+T+  YA    G + +N + +      +  V N  +    +  GVNL EEL  +  
Sbjct: 615 GQVNMTVSRYASEFGGSIGRNAASAETRKESAAAVLNEATARRQSVEGVNLDEELVNMTT 674

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q++N S +++     +   LL  V
Sbjct: 675 YQQAFNASARMVQAAKDLFDVLLGMV 700


>gi|296186751|ref|ZP_06855153.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans
           P7]
 gi|296048788|gb|EFG88220.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans
           P7]
          Length = 463

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 90/241 (37%), Gaps = 19/241 (7%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N +++      +       NI NA+   Y R+      +             
Sbjct: 1   MSGLFGTLNISKSGMFAQQRCIDVTSHNIANANTDGYSRQRAELQTTKPFPMPSVNNAVG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V V T      +  D  +       GQ +    F +  E +  ++  +   + 
Sbjct: 61  PGQLGTGVEVTTIDRIRDSFLDYQIRVEKGVDGQYKGRDKFLSQLENIM-NEPTDTGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I    D+  +   N  E      V  N   +  + N +  E++K++ +    I+ ++ +
Sbjct: 120 DIGNFFDAWNTLGTNAKESNSRSIVAQNTLTLTTDLNHTYNELEKLKENTQTVIKDDVFD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L ++  +N  I     + ++ +D +D+RD+LL ++SE  GI+   +      V TS
Sbjct: 180 INSKLKQIDQLNREIIQVRVAGNNPNDLMDRRDLLLDQLSEKFGITVDRKQFEGNDVTTS 239

Query: 223 D 223
           D
Sbjct: 240 D 240


>gi|258404735|ref|YP_003197477.1| flagellar hook-associated protein FlgK [Desulfohalobium retbaense
           DSM 5692]
 gi|257796962|gb|ACV67899.1| flagellar hook-associated protein FlgK [Desulfohalobium retbaense
           DSM 5692]
          Length = 560

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/561 (9%), Positives = 136/561 (24%), Gaps = 85/561 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
            +L+  +  Q     + +    +  N+ N   + Y R+   ++             + V 
Sbjct: 3   GILSALHLGQTGMAASQKALEVVGNNVSNVSTEGYSRQTIESSALPTLQRGGLSFGQGVE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V +   E+     + L A +  +G      S   L ++           +  I     + 
Sbjct: 63  VSSIERESNMFILERLRAAADQLGNAEAKAS--PLTDLERILSIDEGGLSDSIDDFFGAW 120

Query: 112 ESYSKNLSEDI-----------LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           +  S N   +            L          + +   +   E+    A  + ++  ++
Sbjct: 121 QDLSLNPGGETEREIVLRSAEVLQTEFNQKMTSLDKLRQSIDSELNTQIAGINAKLG-QV 179

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR--------DVLLQKISEIIGISTIVR 212
           + L   + +   V          +      L QR        D     +    G + +  
Sbjct: 180 AKLNATVQQGLAVGKNPNTALDQRDVLLQELAQRLGATAVEGDNGAVSVQLAGGQTLVQD 239

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-- 270
            +   +   + G  + +      +     S           ++                 
Sbjct: 240 TSAFTLQAANSGGVVQDFSLEIGSTTIDLSREDFGGGFGGLLNVRDEVVTGVQDEMVNLR 299

Query: 271 -----KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                 +         +     N   E       +         N+         +    
Sbjct: 300 SSLIQAVNGQHTQGTDLDGDTGNNFFEPVTHFKSASFGTKTAPANTTGSDSDVKVEFSDG 359

Query: 326 LDNKLCQGISETICVNPQYRSNPS------------------------------------ 349
            D  +      T     +  ++ +                                    
Sbjct: 360 TDKSITIPDGTTFEGVAEAINDANVGVKATVAGTSGDYELRIASTDPDTTITTITNPSSN 419

Query: 350 ----FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------NTNVT 399
                L                +    D+     D+   N     +AG+      N   T
Sbjct: 420 LQSPLLSWTQDGGGGDSGLQLAIENTGDIAAGESDAPGDNRNAQKMAGLKNEKMVNGRYT 479

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
            +++       +      +       Q   + +        GV++ E +  L + ++++ 
Sbjct: 480 AIDFYGKVAADVGVAGQQNDFNRSSFQNTVDQLEARRQEISGVSINESMIKLQRYQKAFQ 539

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            S + +   D+M+QTLL   +
Sbjct: 540 ASAQYLTTADEMMQTLLNIKR 560


>gi|308273521|emb|CBX30123.1| hypothetical protein N47_D29320 [uncultured Desulfobacterium sp.]
          Length = 469

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/481 (11%), Positives = 112/481 (23%), Gaps = 23/481 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVTQRSEN 59
            +  N        I  NI N +   +                    S +     +    +
Sbjct: 1   MSGLNALGNAMTVIGDNIANVNTVGFKESRVTFQDVLSQTVATTAGSAQVGRGTSLADIS 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +       +  S+         F  +++        NN       + R   +    N S
Sbjct: 61  SSFSQGSFESTDSSTDLAIGGAGFFMVRD----PGTSNNDYYTRAGEFRFDKDGNFVNPS 116

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           + I+    +D A    Q   T         + ++      I NL    +  ++  +    
Sbjct: 117 DYIVQGWKLDEATGQDQGTITDITLSSFTSSPSETSSLSMIMNLDSSSTNNSIGANTALS 176

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +  DA              S    +       +   V            P       
Sbjct: 177 ALWNGSDASGEYIA----DTDYSYQTTLKVYDSLGSTHDVSIYFDKGETAADPVWEYIVT 232

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           +N              G++           G I   +      +         +A     
Sbjct: 233 VNPSEDLRTITDATQQGLLARGTIEFNGTSGDISGGVNSITCSLSDGAGGWTALANTDAT 292

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +           E + G  +   +           +       QY S  + +        
Sbjct: 293 ANGGYFT--FAPEFIAGSPMNVKLDFGTRFNGSEWANDALSTTQYASASTTVFQSADGYG 350

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  ++A    +   Y +          +A       L +   N         S   
Sbjct: 351 AGDLQAISVATDGVITGQYSNGQVLPLYRVALAKFQNEQGLYKVGGNLFSQ--TRLSGEP 408

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       +S +      V+L  E   +I  ++ Y  ++K+I   D+ML  L+   
Sbjct: 409 ITGKPGGNGLGSLSPNSLEQSNVDLATEFVRMITTQRGYQANSKIITTIDQMLSELINLK 468

Query: 480 K 480
           +
Sbjct: 469 R 469


>gi|134300275|ref|YP_001113771.1| flagellar hook-associated protein FlgK [Desulfotomaculum reducens
           MI-1]
 gi|134052975|gb|ABO50946.1| flagellar hook-associated protein FlgK [Desulfotomaculum reducens
           MI-1]
          Length = 586

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 112/367 (30%), Gaps = 33/367 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------- 44
           S       A+       +       NI NA+   Y R++ + +                 
Sbjct: 3   STWFGLEIAKRGTQVYRKAMDVTGHNITNANTPGYSRQEAVISPSTPWTRPDYLTAMTPG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V   R       D  +    S  G            E +   +         +
Sbjct: 63  QLGTGADVKEVRRIRDYYLDVQMRNSGSFEGYWEKKLDMAKRTETVF-LEPDGRGLQLTL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               +  ++ + +  +  + K V +  +E+   F     ++  I    +  ++ ++  + 
Sbjct: 122 LNFFNDWQNLNNSPQDPGVKKAVKETGDELATIFRQMHNQLSNIDKTVNSSLQYQVDQVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV-YTSD 223
              + +  +++ I     +    +D LD+RD LL ++++   IS   ++N  + V +   
Sbjct: 182 HLTTRIAELSNTIINVIGNGAQPNDLLDERDKLLDELAKFGHISVDTQDNGGIEVRFIET 241

Query: 224 GTTLFETVPRDINFEKMNSYTV----TSESNPIFIDGVVVSSNQGSAV---------PKG 270
              L +            S           N + +DG  V +    A           +G
Sbjct: 242 SGLLVKNDVNGKVITSKLSLVPYAGKDGNENHLAVDGKDVINLTTMADYFNTAPEGAGRG 301

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            I      R   +    N+LD +A+ +I   +EK  + G ++         G    D  L
Sbjct: 302 SILGQESARLENL-SVSNKLDLLAKSIIDRVNEKSGLPGPAKITKPFSFFTGNGAADISL 360

Query: 331 CQGISET 337
              I   
Sbjct: 361 GDEIKNN 367



 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 43/126 (34%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                  + +  N  G   +     +         P      + T   + +  +  +   
Sbjct: 461 DDGLGHIVLSANNGEGTLKVQATGSNIGLSYLFGQPKDAYVLDTTFENFFQGIVAQVGAA 520

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
                ++    Q +   I     +  GV++ EEL+ +I+ +  Y    ++I   D+ML  
Sbjct: 521 ADHHDNMLENQQAIGQQIEALRQSVSGVSIDEELTKVIQYQYGYQACARMISMQDEMLDY 580

Query: 475 LLEGVK 480
           L+  ++
Sbjct: 581 LINRIR 586


>gi|187918055|ref|YP_001883618.1| flagellar hook-associated protein FlgK [Borrelia hermsii DAH]
 gi|119860903|gb|AAX16698.1| flagellar hook-associated protein 1 [Borrelia hermsii DAH]
          Length = 627

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 129/352 (36%), Gaps = 24/352 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------T 44
           S  +     +           +I  N+ N     Y R+  +                   
Sbjct: 3   STFSGIEIGKKSLFAHKDAMNTIGHNLTNTSKPGYSRQRVIMKTEMPIYAPQLNRANKAG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +      ++ D  +   S  +G       F +L E +  ++  + S    +
Sbjct: 63  QLGQGMMVQSIERIRDDLLDIRIAEESHRLGYWNSKDKFISLLENIY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   DS +  S+           ++  +   +   +    + +I   A+ E+++ I  + 
Sbjct: 122 NDFWDSWQDLSRQPQGLAERNITLERGQAFAEIVRSRFHSLNRIYTMANDEVKITIEEIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            +L  ++ +N  I    A K   +D +D+RD+++ K+S +I IS   + + +  +  ++G
Sbjct: 182 NYLRNISDLNRQIAKAIAMKDQPNDLMDERDLIVDKLSNLISISIENKRDPNEFLIHTEG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L +    +    +  +    ++ N ++ +    + N       GK+ AL+ +RD+ + 
Sbjct: 242 KHLIQGAIANEFILEAANGPTRTKWNILWNNREPANINT------GKLGALINVRDNEIK 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              N++D MA  +    +E        +   G    D    L ++  +  S 
Sbjct: 296 NEINEIDNMAINITELVNEVHISGHGLDQKSGRIFFDQEYKLTDESGRYDSN 347



 Score = 98.2 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 77/228 (33%), Gaps = 1/228 (0%)

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            +  ++   N  ++    +I A  ++    +   +          I              
Sbjct: 398 TVQDIINKINNSNSQVTARINAEGKLEIKAIKEEERDSAIFRIRYIEDSGLFLTTYTGIL 457

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF-LRDGGSVSKKFLWNVKNLAGY 371
           N  G   A   +D++       + +  ++P         +    S     + +       
Sbjct: 458 NASGAEGAYNYQDVNTTNQLINTASYSISPLKNPAAWLKVSKEISEDPSKIASGIRTPTN 517

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              I +   +       +    I  NVTL +Y  N+   +      +       + +   
Sbjct: 518 NMPIGNNETALRIASFVNSQIMIGKNVTLNDYFANTTSNIAIKGQIAEITKNSQEQILRS 577

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +++   +  GVN  EEL+ +I+ +QS+  ++K I  + +++ T++  +
Sbjct: 578 LTDLRLSISGVNKDEELANMIEFQQSFIAASKFITVSAELIDTIINKM 625


>gi|228914317|ref|ZP_04077932.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845311|gb|EEM90347.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 420

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 138/479 (28%), Gaps = 71/479 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61
              A     +  +N+ N     YVR+      +               V  +        
Sbjct: 1   MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGYGVQTLGVDRITDE 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +  K  +   S +     + S  +  E M      N S +  +    ++    +KN  + 
Sbjct: 61  VKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPEQP 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               T+I    +     N  A+ +    A   ++IE  ++   R    L   N  I    
Sbjct: 120 NYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAGSLAEANKKI--GQ 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A     +  LD+RD ++ ++S+   I     + N  +        L              
Sbjct: 178 AGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T   + N                +  G I++ +  +   +  ++  L+E+   +    
Sbjct: 228 QDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKKNLEELMSSVKNEV 286

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +          +                        + +NP++  + S ++     + K 
Sbjct: 287 NTVMGKEFFVGDQAK--------------------DMKLNPEFAKDVSKMKISAETANKL 326

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                                               ++  +     +  +  ++S  +  
Sbjct: 327 AAITDGNYKEG-------------------------LSYKQALDQFVVGVASDKSAVNAY 361

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +   I +      GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 362 QKIHGDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420


>gi|152980141|ref|YP_001353117.1| flagellar hook-associated protein FlgK [Janthinobacterium sp.
           Marseille]
 gi|151280218|gb|ABR88628.1| FlgK flagellar hook-associated protein [Janthinobacterium sp.
           Marseille]
          Length = 647

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 129/413 (31%), Gaps = 16/413 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----------NVT 51
           +  + + A++    A    A+   NI N     Y R+  + +                  
Sbjct: 1   MSNLLSIAKSGLAAAQAGVATTGHNIANEKTPGYSRQLVIQSSLGGQNLTGGGYIGNGTN 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V + +    +     + A  S+  Q     +       M AD   +      I      +
Sbjct: 61  VDSVKRIFNDFLAAQVVAAQSSTSQLDTYYAQMNKVNNMLAD--SSVGLAPVIQSFFKGI 118

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +    N       + ++  AE +V  F +   ++  +RA  + EI   ++N+  +  ++ 
Sbjct: 119 QDLVNNPGGASSRQAMLSGAEALVSRFQSMDGQLSSMRAGVNNEITGAVTNINAYAKQIA 178

Query: 172 VVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +NDAI      S    +D LDQRD+L+ ++++   +S + +  +   V+  +G  L   
Sbjct: 179 QLNDAIAKAQNGSGQPPNDLLDQRDLLVAELAKQTKVSIVQQAGDY-NVFIGNGQPLVVG 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +             +G   +    S++  G +  L + R   +   QN L
Sbjct: 238 NSNYDLVTVTSPTDPGRLEVGYVSNGTTYTI-PESSLTGGNLGGLFEYRSQSLDPIQNAL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  L  +F+ +  +  +     G               +              +   
Sbjct: 297 GRIALGLAATFNAQHKLGQDQNGNLGGDFFSLASPAVTGSTKNTGNAQIGASISNVDALT 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             D         + V  L+    + +            D      T  +  E+
Sbjct: 357 TSDYRLSYDGTNYKVTRLSDNASMYSGATFPAGTIDGVDFSVTSGTMASGDEF 409



 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/320 (8%), Positives = 75/320 (23%), Gaps = 6/320 (1%)

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           L+   V         A    +   +D       ++S       + R +++  +Y+     
Sbjct: 328 LASPAVTGSTKNTGNAQIGASISNVDALTTSDYRLSYDGTNYKVTRLSDNASMYSGATFP 387

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVV------SSNQGSAVPKGKIKALLQIRD 280
                  D +       +         ++G            + +A    +  A      
Sbjct: 388 AGTIDGVDFSVTSGTMASGDEFLIRPTVNGASGLNVLIKDVKEIAAATPIRTGAPTTNTG 447

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           +      N         + +       +  +               +       + T   
Sbjct: 448 TGAISAGNITSAFDGSAVTTPVTLTYDSAANTLTGFPAGMPVTVTTNGVPTTFPAGTPVT 507

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                       +          +   ++   +      +      +           + 
Sbjct: 508 YTAGSVISFGGAEIKISGAPANGDKFTISANTNGDGDNRNMLALGELQTKNVLQGGTASY 567

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                  +  +     +          +   +  +  +  GVNL EE + L++ +Q+Y  
Sbjct: 568 NSAYSQLVSLVGNKTRELQTNSASEGALLKQMQTAQQSESGVNLDEEATNLLRYQQAYQA 627

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           S K++     M   L+   +
Sbjct: 628 SGKVMQAVSDMFDVLISLGR 647


>gi|218885350|ref|YP_002434671.1| hypothetical protein DvMF_0246 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756304|gb|ACL07203.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 545

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/552 (9%), Positives = 123/552 (22%), Gaps = 79/552 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MS+ A      +      ++   +  NI N +   +                      + 
Sbjct: 1   MSVTASMWTGVSGLLAHGEKMNVLGNNIANVNTVGFKGSRMDFQDFINQDVYSAVGVSQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V+  +   +         + A       + F  +            S        R 
Sbjct: 61  GRGVSIGAIFGDFSQGAFETTNEATDLAIGGKGFFQV-----RPKGQETSYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDNA-----------------------------EEVVQNFNT 140
             + Y  +    +L    I+ A                             +        
Sbjct: 116 DNDGYLVDPHGYVLQGWEIEKARPSLSTSTAQVTTTTSQIKGAGSPKDIKLDGFTAEPQH 175

Query: 141 SAREVQKIRADADKEIELEISNLRRFL----SELTVVNDAIKFKTASKHDAHDFLDQRDV 196
           ++        DA    +  ++    F     +        +     +        D+   
Sbjct: 176 TSTITSAHNLDARDGGDKSVNGANPFFSVFNNWDGSAATPLSDSRFAYQTTIKVYDEGGT 235

Query: 197 LLQKISEIIGISTIVRNN-----NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
             +       +ST    N            +   +        ++F   ++  +      
Sbjct: 236 SHELTVYFDQVSTDSVANAASGKRYWEYMVTMNPSDDLRSVNGLDFAGTSAAGILMTGTL 295

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
            F     ++      +  G    L  + + V   F N    +        +     +   
Sbjct: 296 TFDTSGQLTDMTAFTIASGATGNLKDMNNWVPTTFSNNGYPLFVANFSGVANASYTSPTV 355

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETI-----------------------CVNPQYRSNP 348
                 ++ +    L N      S                               Y  + 
Sbjct: 356 PTEAEPYLMELNFGLRNLSNSWGSAPASAAAIGSNAGNLGGLGAQGERQSTAMTSYGGSS 415

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S +                +     +   Y +    +     +    +   L     N  
Sbjct: 416 SMIFQKQDGYTFGFLQNITVDQDGVVHGRYSNGVILDLYQITLYDFTSPTNLRREGGNLF 475

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
              E   S        +   +  ++ +      V+L  E   +I  ++ +  ++K+I  T
Sbjct: 476 S--ETRASGDALAGPANANGYGSVNSNSLEQSNVDLAREFVQMITTQRGFQSNSKVITTT 533

Query: 469 DKMLQTLLEGVK 480
           D ML+T++   +
Sbjct: 534 DTMLETVVNMKR 545


>gi|167628881|ref|YP_001679380.1| flagellar hook-associated protein flgk, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591621|gb|ABZ83369.1| flagellar hook-associated protein flgk, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 736

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 135/452 (29%), Gaps = 47/452 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+   N           NI N + + Y R+  ++  +               
Sbjct: 3   STFFGLEIAKRGINANRIGLDVTGHNITNVNTEGYSRQTIVSVTTASLFEPSMHGVYGAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V   R       D         +G   +        + + A +  N      +
Sbjct: 63  QIGTGVDVSEIRRYRDAFLDLNYRKEIRTLGAWSVKSDTLQRLQSLLA-ESDNKGLASVL 121

Query: 105 SKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +  ++ E  + N          VI+  + +V+     +R++ +I +  +  +   + ++
Sbjct: 122 DQFWEAWEDVTPNTDSPPAARAVVIERGKALVETLKHISRQLDQIESSLNDRLAQMVYDI 181

Query: 164 RRFLSELTVVNDAIKFKTASK----------HDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             +  ++  +N  I+   +             +A+D  DQRD+LL K+++++ I+     
Sbjct: 182 NSYGRQIASINSQIQRIESGNPDKSILGGHRQNANDLRDQRDILLDKLAKLVDITVSEDA 241

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           +  + V   +GT +     R + +         +     +  G     N       G+++
Sbjct: 242 SGMVSVSAGNGTLVDGVSFRTLTYYDAPDANNKALYEIKWDTGQSAYFNA------GELQ 295

Query: 274 ALLQIRDSVVPIFQ-------NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            +L+ R S+VP  +       ++ D       GS + +   + +  +             
Sbjct: 296 GILESRGSLVPPGKETTLFGSDKFDWQISANAGSLNIEKLSSLHLTSAAPAGNYRFTIGS 355

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           + K                +  +     G  S     N  +  G      +     +   
Sbjct: 356 EWKPVSATLFLPAKGLPLATASTITMGYGGKSFNIFLNKNDDVGSFINKVNAFTRESGIQ 415

Query: 387 IFDPVAGINTN-----VTLLEYARNSIGWLEK 413
                            T+ + + + +  L  
Sbjct: 416 ARLAKTASAGGLQVIFNTVKDVSASGVFTLGT 447



 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 122/364 (33%), Gaps = 5/364 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                 +  I       +    +   +     + K+ A   +               L V
Sbjct: 370 GLPLATASTITMGYGGKSFNIFLNKNDDVGSFINKVNAFTRESGIQARLAKTASAGGLQV 429

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           + + +K  +AS            V+    + +  I+     N  + V +S    +  T+ 
Sbjct: 430 IFNTVKDVSASGVFTLGTFPSPPVVSAAWTPMANITVSNGQNAVISVASSS---VLGTMT 486

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             +   ++       E        +   S      P G  +  +  R+ ++   + +L+E
Sbjct: 487 TTVVGSRVTVMQEGKERMVFDAAAMAPFSPIWEGAPAGAYEFQITKREGLIQDARRRLNE 546

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V++ S +E      +  ++                                NP    
Sbjct: 547 LALVVVRSVNEVHMAGVSEADLRKDPTMARSDRKFFVDNADKISNPKRIDSIEINPELTA 606

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              +++        +  G   + ++       N  ++ +      +T  ++ RN +G L 
Sbjct: 607 --STLACSQPSRTSSDKGTTVVGDNRNALALANLKYEKIRDFLNPMTYDDFYRNVVGDLG 664

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
               ++  +H    V+ + I +   +   V+L EE++ +I+ +Q+YN S +++   D+ML
Sbjct: 665 VAGQEAKRMHDNQTVLTDTIDKQRQSISSVSLDEEMTNMIRYQQAYNASARMVNVMDEML 724

Query: 473 QTLL 476
            T++
Sbjct: 725 DTII 728


>gi|296390550|ref|ZP_06880025.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa
           PAb1]
          Length = 683

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTRIPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +             + AD       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELNAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + ++N S     + V+  A+ + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D LD RD  ++K+SE++G++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +     + N    V  G++  LL  RD+V+    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A     + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 20/434 (4%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                  +     + +    +  +M     + +       +KL     +++ +     LG
Sbjct: 252 TRYQVQLTLGDSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQLALTFA-DTVNKQLG 310

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           + +    +     F               K       +    +++ + +N +        
Sbjct: 311 QGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTSKLNSSDFRLDFDG 370

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS-- 242
            +        D    +++        +   +   V      TL +       F    +  
Sbjct: 371 TNFTA-RRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFSVTLDQLPAAGDRFTLQPTRR 429

Query: 243 -----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                 T    ++ +   G   +    +    G I     +            +      
Sbjct: 430 GASDIETTLKNASQLAFAGSARAEATTNNRGSGAIGQPNLVGGPSPIDPAVLQNAFGANG 489

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNK--------LCQGISETICVNPQYRSNPS 349
           +   +              L       D D               +          S  +
Sbjct: 490 LPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSGQT 549

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYARN 406
           +  +    +     +   L+   D I+   ++ N N +          +T  T  +    
Sbjct: 550 YTYEFNLSNVPQTGDSFTLSFNKDGISDNRNALNLNALQTKPTVGGTGSTGSTYNDAYGG 609

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +    + +      SQ V     +S  +  GV+L EE + LI+ +Q Y+ S ++I 
Sbjct: 610 LVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQVIQ 669

Query: 467 FTDKMLQTLLEGVK 480
               +  TL+   +
Sbjct: 670 VARSLFDTLIGAFR 683


>gi|309390123|gb|ADO78003.1| flagellar hook-associated protein FlgK [Halanaerobium praevalens
           DSM 2228]
          Length = 572

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 141/449 (31%), Gaps = 27/449 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TTI 45
           + +  +          +       NI NA+N+ Y ++  +                    
Sbjct: 4   IFSGLSVGLRALETQRKSLDVTGHNIANANNEKYNKQRAVHKASYPYTAPGLSNNGSAGQ 63

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V +              +   +   G  + +Q      E +  ++   +     I+
Sbjct: 64  MGTGVEIAQIERVKDQFISSQIFKETQTSGYWKEMQRGLEKVEYIL-NEPSESGIDSSIN 122

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +  +SL+  S N S+      V +NA  V+ +F +   ++   +   +  +    +N+  
Sbjct: 123 QFWNSLQDLSNNPSDTAARNMVRENAYNVIDSFQSVENQLNDYKESINDNLSNAAANINN 182

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
              ++  +N  I     S  + +D LD+RD L +++S +I + +      ++VV T+   
Sbjct: 183 ITGKMADLNKQIVSVKGSGQNPNDLLDERDALYKELSSLINVQSREDEQGNLVVSTNGLQ 242

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            +  +   D+  +         ++    I      +        GKI A + +RD  +  
Sbjct: 243 LVNGSDSYDLETKGFTEDKTIPKNQDKLIHSQ---TGNEIRPTNGKIDAWMDMRDDKLDF 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           ++ +LD++A  ++  F+ +     ++  V G      I +  ++      +         
Sbjct: 300 YRGRLDKLAAEMVKEFNSQHKAGYDANGVDGGDFFKPIDEDSDQSAISQLDLTAAIKDLE 359

Query: 346 SNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +    +  G      F        ++          N      +          +     
Sbjct: 360 NGLDKIAAGNKNIDTFVELDTLGNSLSGNYQVEVTENATPGKLDLVISDSDGNQVYPTSG 419

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           +      +   LE + S      +     
Sbjct: 420 VETVDAGTTIDLEVDGSGGIQTPVTGSTT 448


>gi|297538902|ref|YP_003674671.1| flagellar hook-associated protein FlgK [Methylotenera sp. 301]
 gi|297258249|gb|ADI30094.1| flagellar hook-associated protein FlgK [Methylotenera sp. 301]
          Length = 650

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 144/405 (35%), Gaps = 14/405 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + +  ++    A    ++   NI NA    Y R+  +   +           +   V
Sbjct: 1   MADILSIGKSALAAAQVGLSTTGHNIANASTPGYSRQVVIQAAAQAQSSGSGYIGQGTEV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +       +  K +    +A    ++  S  +    M +D   +      IS   +S+ 
Sbjct: 61  ASITRAFNEILSKQVVNSQAASSSSQVYASQLSNINNMLSD--ASAGLNPAISDFFNSVS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N S+    ++++  A+ +V    ++   + ++R+D + ++   ++ +  +  ++  
Sbjct: 119 DLAANPSDIPTRQSMLSYAQSLVNRLQSTNSSLNEVRSDVNTQLTGSVNLVNTYAKQIAS 178

Query: 173 VNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N++I    ++  +  +D +DQRD L+ ++S+ +  + + +      +Y  +G  L    
Sbjct: 179 LNNSIETAISSDGNPPNDLMDQRDQLVTELSKQVKTTVVPQGQGSYNIYVGNGLPLVIGK 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +    T         G        S++P G I  LLQ R   +   QNQ+ 
Sbjct: 239 SVMSLTTASSPTDPTRLEVSYQSSGKSTVLG-TSSLPGGVIGGLLQFRAESLDSVQNQIG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A VL  +F+++     +     G  + +      +         I  +    +     
Sbjct: 298 QVALVLGDTFNKQHQQGIDLNGNLGGNLFNIPTPTVSASGNNQGSAIVTSQIIDARAITA 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            D         + +  L+    L N        +    P   ++ 
Sbjct: 358 SDYRLQFDGTNYKISRLSDNVVLYNDPAAPTPASLPTPPATSLDG 402



 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/380 (8%), Positives = 83/380 (21%)

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
             +     +   L  +     + +  +                 + +            +
Sbjct: 269 GTSSLPGGVIGGLLQFRAESLDSVQNQIGQVALVLGDTFNKQHQQGIDLNGNLGGNLFNI 328

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               +    +         +   A    A D+  Q D    KIS +     +  +     
Sbjct: 329 PTPTVSASGNNQGSAIVTSQIIDARAITASDYRLQFDGTNYKISRLSDNVVLYNDPAAPT 388

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
             +              +     +        P       +S     A       A+L  
Sbjct: 389 PASLPTPPATSLDGLSFSVPAGMAANDEYVIRPTRNVATSISLAITDAKKLAIGSAMLSS 448

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             +        +         + +     A        +  +     +       +    
Sbjct: 449 VANSTNTGTASISIPPTGSNLTGTLGVTYASGMPGTLSMAPSTQPVTVTVSGVSTVYPAG 508

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                       +            N               +      +       N+  
Sbjct: 509 SPITYTSGATISVGGLSFAITGTPANGDKFTLSASGPGDNRNGLLLADLQKQGTINNSTT 568

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           T        +  +     + +        V    + +  +  GVNL EE + L++ +Q+Y
Sbjct: 569 TYSSAFAELVNGVGNKTRELNITSTSEAKVLEQATAAMQSESGVNLDEEATNLLRYQQAY 628

Query: 459 NISNKLIMFTDKMLQTLLEG 478
             + K++    ++  TLL+ 
Sbjct: 629 QAAGKMMQIASQLFDTLLQL 648


>gi|309701354|emb|CBJ00655.1| flagellar hook-associated protein 1 [Escherichia coli ETEC H10407]
          Length = 547

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGDDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|197122916|ref|YP_002134867.1| flagellar hook-associated protein FlgK [Anaeromyxobacter sp. K]
 gi|196172765|gb|ACG73738.1| flagellar hook-associated protein FlgK [Anaeromyxobacter sp. K]
          Length = 469

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/463 (14%), Positives = 148/463 (31%), Gaps = 35/463 (7%)

Query: 26  RNIENADNKNYVRRDTMTTIS-----------PENVTVVTQRSENKNMFDKVLHAHSSAI 74
            N++NA+   Y R+  +   +               T+           +  L A     
Sbjct: 27  HNLQNANTPGYARQRAVLATALPAQQAGGAWIGRGATLAQVTQARDRFLEAQLPAAQGRA 86

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
            +     S     +++  D      P   +  L  +L   S+  S+  L +  +  A  +
Sbjct: 87  ARSAAASSLLGAVQVL--DPEAEGGPGEALGGLYAALTELSQAPSDPGLRQATVAAARTL 144

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD-AHDFLDQ 193
             + N + + ++  RA AD  I   +S+     +E+  +N  I+   A+     +D LD 
Sbjct: 145 ALSLNRARQGLEDARAGADARIAAGLSDANALAAEVAALNRDIRAARAAGAGEPNDLLDA 204

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           R   + +++E+ G +    +  D+ +    G+ L   +       +          +   
Sbjct: 205 RQRSVDRLAELTGATPAATSEGDVSLLLPGGSALVAGLSASTLLPQPGP-------DGHL 257

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
              +          P G++  LL      +      LD++A  +    +         + 
Sbjct: 258 SVQLATGGVCADVAPGGELGGLLDASSGPLKDAITALDQLAWAVGNQLNAVHRAGWGLDG 317

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G  + D          +             ++PS L      +        +      
Sbjct: 318 GTGRDLLDVGATAAGAARRIAVS-----AAVAADPSRLA-----TASAAGQPGDAGNVLA 367

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           L+             D +AG++    L        G              +   +  H++
Sbjct: 368 LLATSTTRIATGQGSDLLAGLDATGAL----SRITGTFGAAARGLAASAAQDAGLAGHLA 423

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +  GV++ EEL  + K +++Y   +K+I  + +M  TLL
Sbjct: 424 TMRESASGVSVDEELLEMEKAQRAYEAISKVIQASSEMFDTLL 466


>gi|260431756|ref|ZP_05785727.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415584|gb|EEX08843.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 439

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/487 (10%), Positives = 127/487 (26%), Gaps = 63/487 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M++ +  N         + + A+I  NI N+    Y R +T            + +    
Sbjct: 9   MTISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTAGQGGSYSAGGV 68

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           R+ ++ + D+   L   +++       +    ++         N          R + E 
Sbjct: 69  RTTSQRLIDQRGSLVTTNNSTDLAVQGRGLLPVRPSSQIGTPSNEMLLTTTGSFRTNAEG 128

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y    S  +L     ++   +      +   ++ ++   ++      + +   ++     
Sbjct: 129 YLVTESGLVLLGWPANSDGSIPNVSRDTPAALEPVQLSVNQLSGAPTTEMNLRMNLPATA 188

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            DA             F +        I  +  +     +N                   
Sbjct: 189 TDAGASGDPQPLSVEYFDNLGKPETVDIELVPIVPATGSSNQW----------------- 231

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                   + T+   ++   + G    +   S    G + ++  +               
Sbjct: 232 --------TMTLRDSASGGAVIGEYTLTFTDSRTAGGTLASVTAVSGGAYDPATGSFVVN 283

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   +                              G+        Q     + +  
Sbjct: 284 VAGGPVEVN-----------------------------VGLIGDPDGITQLSDTFAPVSI 314

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
               S         +     +   Y     +     P+A +     L     NS  +   
Sbjct: 315 TRDGSAVGTMASVEIDENGYVYALYDTGVTRRMYQIPLADVPNPNGLTAL--NSQTYAPS 372

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S ++ L    +     +          ++  EL+ +I+ +++Y+ S K+I   D+MLQ
Sbjct: 373 RESGTYFLWNAGEGPTGELISFAREESTTDVATELTSMIQTQRAYSSSAKVIQTVDEMLQ 432

Query: 474 TLLEGVK 480
                 +
Sbjct: 433 ETTNIKR 439


>gi|188586026|ref|YP_001917571.1| protein of unknown function DUF1078 domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350713|gb|ACB84983.1| protein of unknown function DUF1078 domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 508

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/509 (8%), Positives = 127/509 (24%), Gaps = 34/509 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------NV 50
           +L       +   N   +  +I  N+ N +   +         +                
Sbjct: 1   MLRSMYSGVSGLRNHQTRLDTIGNNVANVNTAGFKGDRVTFQDAFNQTLEAASAPNERGG 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           T   Q     N+          ++             +     +   +     +      
Sbjct: 61  TNPQQVGLGMNIGSMDTIHTQGSLENTGRDTDLAIEGDGFFVVNDGQSDMFTRVGNFGVD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS---NLRRFL 167
            E    +       +    + +    N +        +    D E    +    NL    
Sbjct: 121 SEGNLVSQGTGYKVQGYAYDEDADEINTDEIVDMEIPLGDVVDPEATENVKYNGNLNSNT 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG--T 225
                V+  +        +    L+  +    +    +    I+  +   V ++ DG  T
Sbjct: 181 EPGETVSTTVNVFDNLGSEHTLNLEFEESGENEWQMTVRKDGILIEDEIQVSFSDDGELT 240

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           ++ +        +   +       +    + +    +  +   +  I+ +L   D     
Sbjct: 241 SVGDEGTSYSINDFEATVQDFGGLSDSAKEDLGFDIDDDNGHDEDNIQGMLMRNDVQAGN 300

Query: 286 F-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG----------- 333
                +  +A  + G +    P   N +++     +  +  +  +  +            
Sbjct: 301 AEAEDVAALAIEVEGRYEWYHPDDINFDSLEEGDYSPDVDPIFTQDQEPQNDEEVDLLNA 360

Query: 334 ---ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              I   +    Q     +          +       +     +   Y +   +      
Sbjct: 361 PGGIEFDLGDVRQVAGESTVEGVAEDGQAQGELETYEVDSAGIITGTYTNGETRQLGQVV 420

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           ++       L +       +     S      +        I+        V++ E+ + 
Sbjct: 421 LSDFTNPGGLEKLGSGL--YQPTRNSGEPSYGIAGTGGRGEIAPGALEMSNVDMGEQFTD 478

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +I  ++ +  +++ I   D++LQ L+   
Sbjct: 479 MIVTQRGFQANSRSITTGDEVLQELVNLK 507


>gi|123442778|ref|YP_001006755.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089739|emb|CAL12592.1| flagellar hook-associated protein 1 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 554

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 143/400 (35%), Gaps = 14/400 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  + A    +++  NI N     Y R++T+   +             V
Sbjct: 1   MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNTIFAQNGGTLSPAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           +V     E        L A  +            +  + + ++   +N+ +  +     +
Sbjct: 60  SVTGVNREYNAFITNQLRASQTQSSGLTTYYQQISQIDNLLSNT--SNNISTTMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D   KTV+  AE +V  F  + + ++ +    +++I    + +  +  ++
Sbjct: 118 LQNLVSNAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKISDSATQINNYAEQI 177

Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +ND I     +S  + +  LDQRD L+ ++++I+ ++   ++ +   V  + G +L +
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVAVTVTQQDGDTYNVSFAGGLSLVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S   T  +               S +  G +   L+ R   +   +NQ
Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYNRGSGDTMEIDESRLTTGSLGGTLKFRSEALDSARNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L ++A V+  SF+ +     ++    G       +    K  +   +         ++  
Sbjct: 298 LGQLALVMADSFNTQHKAGFDANGDAGTDFFSFAQPTAIKNAKNQGDAGLTVAYTDTSKV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
              D         W V  L+    +        N     +
Sbjct: 358 KASDYSVEFDGTNWQVTRLSDNTKVPTTAGADANGKPTLN 397


>gi|116049015|ref|YP_792183.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584236|gb|ABJ10251.1| flagellar hook-associated protein 1 FlgK [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 683

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 135/409 (33%), Gaps = 22/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + +   +    +         NI N     Y R+D +                   +
Sbjct: 1   MSDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R    +     L   +S   +             + AD       +  + +   +L+
Sbjct: 61  VDVRRLASDFLTGQLRNATSQNSELSAFLGQIDQLNSLLAD--NTTGVSPAMQRFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + ++N S     + V+  A+ + + FNT   ++ K  +  ++++    S +      +  
Sbjct: 119 TAAQNPSSTEAREAVLAQAQGLSKTFNTLYDQLDKQNSLINQQLGALTSQVNNLSQSVAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            NDAI    ++    +D LD RD  ++K+SE++G++ + +++N + ++   G  L     
Sbjct: 179 YNDAIAKAKSAGAVPNDLLDARDEAVRKLSEMVGVTAVTQDDNSVSLFIGSGQPLVVGNT 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T     + +     + N    V  G++  LL  RD+V+    N+L +
Sbjct: 239 VSTLSVVPGLDDPTRYQVQLTLG--DSTQNVTRLVSGGQMGGLLAYRDTVLDSSYNKLGQ 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A     + +++     +     G  +   I D D    + +            N   + 
Sbjct: 297 LALTFADTVNKQLGQGLDLAGKAGANLFGDINDPDITALRVL--------AKNGNTGNVH 348

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              +++     N  +     D  N        +             TL 
Sbjct: 349 ANLNITDTSKLNSSDFRLDFDGTNFTARRLGDDASMQVTVSGTGPYTLS 397



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 3/196 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N L   A V     +        +         + +           +          S 
Sbjct: 488 NGLPLSATVSADGKTYTMTSPLPAGWSYVDKDGNALPGSPTLNSGTSNSVRMAYTDPGSG 547

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP---VAGINTNVTLLEYA 404
            ++  +    +     +   L+   D I+   ++ N N +          +T  T  +  
Sbjct: 548 QTYTYEFNLSNVPQTGDSFTLSFNKDGISDNRNALNLNALQTKPTVGGTGSTGSTYNDAY 607

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              +  +    + +      SQ V     +S  +  GV+L EE + LI+ +Q Y+ S ++
Sbjct: 608 GGLVERVGTLTAQARASADASQTVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYSASAQV 667

Query: 465 IMFTDKMLQTLLEGVK 480
           I     +  TL+   +
Sbjct: 668 IQVARSLFDTLIGAFR 683


>gi|23016696|ref|ZP_00056449.1| COG1256: Flagellar hook-associated protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 858

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 148/437 (33%), Gaps = 12/437 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL    N A +      +    I +N+ N + K YVR+               V     
Sbjct: 1   MSLTLGLNTAVSGLLTNQKGLDVISQNVVNVNTKGYVRKQMTPESRVVAGVGAGVQQGAL 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    + +   +S  G   + Q++    E M      + S +H I  L+ S E+ +
Sbjct: 61  TRNVDEGLMRDIRRQTSTQGALDVTQTYYPRLEDMFGTVGSSTSISHQIETLQASFETLA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             ++        +  A+++   FN    ++Q +R +AD+ +      +   LS++  +N 
Sbjct: 121 TQVNTPAFQSATVQTAKDMTDKFNEMTSQMQNLRLEADRALHDTTGLINNQLSDIFDLNQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I    A   D  D  D+RD  L  +S+ + I    R +  M VYT  G TL +  P  +
Sbjct: 181 KIVRNNAIGGDIGDLQDKRDTALTALSKYMDIQYFERGDGAMGVYTKSGKTLVDKGPAVM 240

Query: 236 NFEKMNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           +            +     +        + +  + +  G+++ALL IRD++VP  Q Q+D
Sbjct: 241 SHVATTITDSWMTAAGGNFNKLTLSTSDAPDINADINDGEVRALLDIRDTIVPNLQAQID 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           E+A  L  + ++               +        N                 ++ + +
Sbjct: 301 EVASKLKDAVNQVHNRGTIFPTQNSKMVGTRQLQNPNNTALNG-SNPQHIWYTGNDDTTI 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               S   +                    +     + D    +   +T  + A     W+
Sbjct: 360 AMFDSSGNQIASTTLRTIMSSTSYTDAAGAATALDMSDSATTLGVKMT--DVAAKIQSWM 417

Query: 412 EKNRSDSHDLHMKSQVV 428
            +     + +   S  V
Sbjct: 418 RQQSYQGNIMTAASASV 434



 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/441 (10%), Positives = 125/441 (28%), Gaps = 10/441 (2%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
              +        V+     +  +  +   A ++         +F+   +  +       S
Sbjct: 428 TAASASVDTGTMVIDSGDPSVTLAFRDQTATANGSSTTDARINFDVDGDNKADKQVAGFS 487

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               ++    +    S   S+ +     +  A          +     I           
Sbjct: 488 NFFGLNDFFTAKVPDSIQDSDVVAKDFTLGAARSFT-----LSDPTGTIGNTISMAAGSS 542

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           + ++   ++  T  N++    ++S                 I+++   +  +   +    
Sbjct: 543 LYDIAAKINTQTQTNESAILSSSSLTTTSTSSISITDANGTIAQVTFGAATMTLKDIADA 602

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             + G++  +     I           +   P+ I+    +    +      ++    + 
Sbjct: 603 INAKGSS-AQAKAVQIGPNAYGLRIWDNRGVPLNIEVNGGAIGVSNLKSYLGMQPSQMVE 661

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            SV+P        + +           +    + +           +     +    T  
Sbjct: 662 ASVIPEGSGYRLRIRQTSDRELY----LGATPDTLTPAGSFITELKMHTASSRKAGTTQV 717

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 S     R     +        +       +        K  +    +    +  
Sbjct: 718 REDIQGSPAKVSRGAMQYNSDLGKYYLSEGDNTTALALGAAMSTKTNMATAGSLYAGSYN 777

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
             E+A  SI  +  + + S D       +   + + Y++T GVNL EE++ +I  +Q+Y+
Sbjct: 778 FAEHAAASIAQVSTDAAHSKDRQDYQTTLGQALDKQYASTSGVNLDEEVANMINFQQAYS 837

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            S K+I    +ML  L+  VK
Sbjct: 838 ASAKVISTLQEMLDVLVNIVK 858


>gi|163783192|ref|ZP_02178186.1| flagellar hook associated protein FlgK [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881526|gb|EDP75036.1| flagellar hook associated protein FlgK [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 528

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/525 (13%), Positives = 160/525 (30%), Gaps = 51/525 (9%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMF 63
           A F           +      RN+ NA+N +YV+ D +    +P  +     R +    +
Sbjct: 4   ASFGIISQALEIYRKSLDIHNRNVINANNPDYVQEDPVVESFAPVGINFQDVRRDQNIYY 63

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
             + ++  S +          +  E +  +         Y ++  ++     K+ + +  
Sbjct: 64  LNLRNSKLSLVRYLEERSGVLSNVEGIFQELFEGTGINDYTNRFYEAYLDVMKDPTNEGA 123

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK----F 179
              + ++A+ +       + ++  +    D  +   +S +     +L  VN  I      
Sbjct: 124 KNELYNSAKSLADFLRNKSSDIDALDNSIDYNLRDVVSRINELSRKLFNVNREITVMYAQ 183

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DINF 237
             A   D  +FLD RD  L+++SE+I I         + V TS G  L +       + +
Sbjct: 184 NYARGKDYKNFLDIRDKYLRELSELINIDVQQDEIGRVKVTTSKGFALVDFQDNYWQLEY 243

Query: 238 EKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                Y  + + N + I GV             ++      +    A   I +  +P   
Sbjct: 244 TGGKLYWKSKDGNDVDITGVIESGKVKALLDARADLARFKNELNSIASQLISEVKLPRAN 303

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +    + R +            +               L      G      +     S+
Sbjct: 304 SGTWYLVRNVSDPTQPLSTYGIDGNLSFYDNSTTPPTLLATIPNYGTQSLNSLATAINSD 363

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV--------- 398
            +    G S +     +        +   +Y  +     +++       N          
Sbjct: 364 ATLTGAGFSATVVNNPDGTYTLRIDNTNPNYSVNDTGGNVYESSPVFTGNDASDISPVST 423

Query: 399 --------------TLLEYAR-----------NSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
                         T  ++A              IG +   ++D  D       +   + 
Sbjct: 424 LRSDIDDVEFSLTDTFSDFANLWWDNSKGKVNTFIGDISTTQADVKDKLRIESALLESLD 483

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   V++  E   ++KV+++Y    K++   D++LQT L  
Sbjct: 484 RKLKEMQSVSIDREFMEIMKVKRTYEAVAKVVTTIDELLQTTLNM 528


>gi|313639049|gb|EFS04037.1| flagellar hook-associated protein FlgK [Listeria seeligeri FSL
           S4-171]
          Length = 507

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/511 (14%), Positives = 155/511 (30%), Gaps = 36/511 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47
           M L   FN + +  + A        +NI N +   Y+R+                   + 
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQALYSDGGLLGGNKQTG 59

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V   +           +   +                 +      N  P+  +   
Sbjct: 60  YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +  + +KN  +      ++ +        N     ++++      + E  + +L   +
Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +L  +N AI    A  +  +D L+QRD +L  +S   GIS     NN  V   + G  L
Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGK 271
                         + +    S       +   S   S                    G 
Sbjct: 237 VVQGDETTEITSTRTASGFEFSVGGQTLNMPEGSISASVRVNQNEIKSYQAKIETFSNGL 296

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
            KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + + 
Sbjct: 297 AKALDDIQVKNVNKIMDDLQKIGDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTID 356

Query: 332 QGISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
            G +           Y ++ S       V     W +            +      +   
Sbjct: 357 IGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWTINPAISNNAENKQFLGVIAADIAS 416

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                     T   +    I  +  + S S           + +SES S+  GVN+ EE+
Sbjct: 417 LKTDKNIEGTTFPNFMDGIITEVATDASKSSATSTADTQALSSLSESKSSLEGVNIDEEM 476

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 TNIMQYQSYYVANTKAMNTVNDMMKALLAML 507


>gi|91210234|ref|YP_540220.1| flagellar hook-associated protein FlgK [Escherichia coli UTI89]
 gi|117623268|ref|YP_852181.1| flagellar hook-associated protein FlgK [Escherichia coli APEC O1]
 gi|218557964|ref|YP_002390877.1| flagellar hook-associated protein FlgK [Escherichia coli S88]
 gi|237706932|ref|ZP_04537413.1| hook-filament junction protein FlgK [Escherichia sp. 3_2_53FAA]
 gi|306814069|ref|ZP_07448242.1| flagellar hook-associated protein FlgK [Escherichia coli NC101]
 gi|91071808|gb|ABE06689.1| hook-filament junction protein 1 [Escherichia coli UTI89]
 gi|115512392|gb|ABJ00467.1| hook-filament junction protein FlgK [Escherichia coli APEC O1]
 gi|218364733|emb|CAR02423.1| flagellar hook-filament junction protein 1 [Escherichia coli S88]
 gi|226898142|gb|EEH84401.1| hook-filament junction protein FlgK [Escherichia sp. 3_2_53FAA]
 gi|294491481|gb|ADE90237.1| flagellar hook-associated protein FlgK [Escherichia coli IHE3034]
 gi|305852706|gb|EFM53154.1| flagellar hook-associated protein FlgK [Escherichia coli NC101]
 gi|307627448|gb|ADN71752.1| flagellar hook-associated protein FlgK [Escherichia coli UM146]
 gi|315287426|gb|EFU46837.1| flagellar hook-associated protein FlgK [Escherichia coli MS 110-3]
 gi|323953232|gb|EGB49098.1| flagellar hook protein FlgK [Escherichia coli H252]
 gi|323957906|gb|EGB53618.1| flagellar hook protein FlgK [Escherichia coli H263]
          Length = 547

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDRTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|229183930|ref|ZP_04311146.1| Flagellar hook-associated protein FlgK [Bacillus cereus BGSC 6E1]
 gi|228599582|gb|EEK57186.1| Flagellar hook-associated protein FlgK [Bacillus cereus BGSC 6E1]
          Length = 420

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 138/479 (28%), Gaps = 71/479 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61
              A     +  +N+ N     YVR+      +               V  +        
Sbjct: 1   MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGYGVQTLGVDRITDE 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +  K  +   S +     + S  +  E M      N S +  +    ++    +KN  + 
Sbjct: 61  VKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPEQP 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               T+I    +     N  A+ +    A   ++IE  ++   R    L   N  I    
Sbjct: 120 NYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAGSLAEANKKI--GQ 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A     +  LD+RD ++ ++S+   I     + N  +        L              
Sbjct: 178 AGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T   + N                +  G I++ +  +   +  ++  L+E+   +    
Sbjct: 228 QDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKKNLEELMSSVKNEV 286

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +          +                        + +NP++  + S ++     + K 
Sbjct: 287 NTVMGKEFFVGDQAK--------------------DMKLNPEFAKDVSKMKISAETANKL 326

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                                               ++  +     +  +  ++S  +  
Sbjct: 327 AAITDGNYKEG-------------------------LSYKQALDQFVVGVASDKSAVNAY 361

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +   I +      GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 362 QKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420


>gi|300816784|ref|ZP_07097004.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1]
 gi|309798076|ref|ZP_07692451.1| flagellar hook-associated protein FlgK [Escherichia coli MS 145-7]
 gi|300530558|gb|EFK51620.1| flagellar hook-associated protein FlgK [Escherichia coli MS 107-1]
 gi|308118359|gb|EFO55621.1| flagellar hook-associated protein FlgK [Escherichia coli MS 145-7]
          Length = 547

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAILQNTKNKGDVAIGATVTDASGVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|303240172|ref|ZP_07326692.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus
           CD2]
 gi|302592263|gb|EFL61991.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus
           CD2]
          Length = 689

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 143/461 (31%), Gaps = 38/461 (8%)

Query: 1   MSL-LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS+  A F  A++      +  +    NI N +   YVR+  + +               
Sbjct: 1   MSVGFASFEIARSGMTVNERALSVTGHNIANVNTAGYVRQQAIISSGPMQNENTYQLGLG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             +   R       D +    S+ +G  +         + +   D  ++     +++  D
Sbjct: 61  ADIEQIRQIRHQFLDSIYRRESTTLGYWKTRDKTFQDIQSILG-DPMDSGLQEVMNQFWD 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S +  SK      +   V    E +V+  N    ++ K++ D + E  + I  +     +
Sbjct: 120 SWQELSKEPDSLTVRALVAQRGEALVEQVNHVGSQLDKLQEDLNSEFSVRIDEVNSITGQ 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I     S+  A+D+ DQR+ L+ ++SE+  +      +  + +       + +
Sbjct: 180 IAKLNLEILKVEISEDTANDYRDQRNSLVDRLSELANVDVTEMQDGQLDITLGGYFLVSK 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                    + N     +E++ +F    +   +    +  G +K L++ R  V     ++
Sbjct: 240 -------GVQTNLVAEENENSGLFFVPKLAGKDIEVPIRSGILKGLMESRGQVFGAVGSE 292

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIAD------------------GIKDLDNKLC 331
            +             D    ++ N+  +  +                        +    
Sbjct: 293 ENGCPNTKADISFVVDVSDSSATNLTNVQSSIAQYIEDLKRRGIDYNLRLITYGSNVNSN 352

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDP 390
                         ++ +   D G+     +  +  +  +    N Y   F  ++   D 
Sbjct: 353 VNYGGNTTAFQAAVASLTSTADTGNNFGDVVAELDGITDFRSGANKYAVVFSGESIDGDS 412

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            AG     +  +    ++       S   D    S      
Sbjct: 413 GAGSVITTSSADAYATTLKNKGITTSVVTDTSYYSTGAAGE 453



 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 125/375 (33%), Gaps = 26/375 (6%)

Query: 129 DNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
            +A  +    ++ A+ ++ + R   D  + L         +     N        +   +
Sbjct: 312 SSATNLTNVQSSIAQYIEDLKRRGIDYNLRLITYGSNVNSNVNYGGNTTAFQAAVASLTS 371

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
               D  +     ++E+ GI+      N   V  S  +   ++    +          T+
Sbjct: 372 TA--DTGNNFGDVVAELDGITDFRSGANKYAVVFSGESIDGDSGAGSVITTSSADAYATT 429

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
             N      VV  ++  S    G+      I D  +    +        L+ + ++    
Sbjct: 430 LKNKGITTSVVTDTSYYSTGAAGETIGWNVISDGTLGKLYDINSADYEELMTNINDNINS 489

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             N          + + DL  ++   I+          S+   L +  +  + F   + +
Sbjct: 490 DVNEGISVVKDSLNIMPDLRKRMNALINILAREVNYLHSSGKTLGNPPTNGEDFFVAINS 549

Query: 368 LAGYPDLINHYCDSFNK-NFIFDPVAGINTNVTL----------------------LEYA 404
                       D+ +  N I    +G + + T+                       +Y 
Sbjct: 550 AYPIGMGNIKLNDNLSSLNNIVASESGASGDNTIALAIANIRGTDCLQDLKGILSTDDYY 609

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           ++ I  +    S++  +    Q + +  +    + +GV++ EE+S ++K + +Y+ S++ 
Sbjct: 610 QSIILSVGNGGSEAEGITESQQKLVDSANSQRQSIMGVSMDEEMSNMMKYKFAYSASSRA 669

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+ML T++  +
Sbjct: 670 ISIVDEMLDTIISRM 684


>gi|74317646|ref|YP_315386.1| flagellar hook-associated protein FlgK [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057141|gb|AAZ97581.1| Flagellar hook-associated protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 629

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 124/406 (30%), Gaps = 13/406 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
            ++    Q+    A    ++   NI NA    Y R+  +               +   + 
Sbjct: 3   TSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQIE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          +    ++        +     + + AD       +  +      ++ 
Sbjct: 63  TVKRVYNEYLGVQVQTAQASKSGLDSYYAQIKQIDNLLADPAS--GLSPSLQDFFSGIQE 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N       +  + +AE +   FN+ A  + +I    + +I   +  +  +  ++  +
Sbjct: 121 LAANPGAMPSRQAALSSAEALASRFNSLAGRLDEIEQGVNSQIVSSVDVINTYAEQIARL 180

Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           NDAI     AS   A+D LDQRD L+  +++ I  + + + +    V+  +G  L     
Sbjct: 181 NDAIGKAQRASGQPANDLLDQRDQLILDLNKEIKATVVKQGDGAYNVFIGNGQPLVVGGT 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +                 VS    S +  GK+  L++ R   +   QN L  
Sbjct: 241 TSRLSTMASPTNPERIEVAYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGR 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  SF+ +  +  +     G         +        S +        S+   L 
Sbjct: 301 VAIGLASSFNAQHRLGIDLNGAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALT 360

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                 +    +               D    + +   ++G     
Sbjct: 361 TSDYRLQYDGSSYTLTRVSDRASWTVVDGQTVDGVTLSLSGTAAAG 406



 Score = 93.2 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/372 (9%), Positives = 94/372 (25%), Gaps = 5/372 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +Y  +     +         ++        R ++  +    +      S+          
Sbjct: 259 AYQASDGSVSIVGESGLVGGKLGGLVEFRTRTLEPAQNALGRVAIGLASSFNAQHRLGID 318

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI--VRNNNDMVVYTSDGTTLFET 230
           +N A   +  +        +  +      +    IS +  +  ++  + Y     TL   
Sbjct: 319 LNGAAGGEFFTTAGPVVTANTNNASTSTAAVAASISDVGALTTSDYRLQYDGSSYTLTRV 378

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
             R  ++  ++  TV   +  +        S        G  +  + I D         +
Sbjct: 379 SDRA-SWTVVDGQTVDGVTLSLSGTAAAGDSFLIRPTVAGASQFAVAITDPAKIAAAAPI 437

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
              A               +S        A      D                       
Sbjct: 438 RTAAANTNTGSGAISAGTVDSTYPAMPLGAPVTLTYDALTNTLSDGAGFSTTYAPGATIS 497

Query: 351 LR--DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                          +   +    + +    ++     +       N  ++        +
Sbjct: 498 FGGISFTLSGTPADNDSFTVEPNTNGVGDNRNALLLGGLQSANTLGNGTISYQGAYSQFV 557

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +     +       +  + +  + +  N  GVNL EE + L++ +Q+Y  + K++   
Sbjct: 558 SQIGNKTRELEVTSSAAGKLLSESTTALQNESGVNLDEEATNLLRYQQAYQAAAKVMQVA 617

Query: 469 DKMLQTLLEGVK 480
            +M   LL   +
Sbjct: 618 SEMFDALLTIGR 629


>gi|238762354|ref|ZP_04623325.1| Flagellar hook-associated protein [Yersinia kristensenii ATCC
           33638]
 gi|238699339|gb|EEP92085.1| Flagellar hook-associated protein [Yersinia kristensenii ATCC
           33638]
          Length = 463

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/482 (12%), Positives = 148/482 (30%), Gaps = 41/482 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQRSE 58
            AQ     A    ++   N+ N +   Y R+    +           +   V V   +  
Sbjct: 13  IAQTGLQAAQAGLSAAAMNLSNVNTPGYSRQRAEQSAVSTGGNNAYSAGNGVNVDAFKRL 72

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           ++          SS        Q+  +  E    D          +    +SL   S N 
Sbjct: 73  SEQYLVSEGWKASSNHQYFSASQNALSKLEHSLGD--KETGLAAGMRAFFNSLSLGSNNP 130

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S     + V++ A+ +  NFN   +  Q+ +     +    IS +      +   N  I 
Sbjct: 131 SSPAYREQVVNEAKSLALNFNYFHQSAQEQKQVIATQRSAIISQVNGLTQSINEYNQKIV 190

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +   + +   DQRD L+ K+SE++ ++     +    +   +G  L           
Sbjct: 191 KLGSDGTNTNVLQDQRDQLVNKLSEMVDVNVTKGTDGGYNISMKNGLPLINGQTVATLAL 250

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              S     + +         +S + +      + ++      ++   ++ +  MA++L 
Sbjct: 251 NTGSAQPQIDIH------FAGNSTKINMSCGASLGSINNYEQGLLKETESIVQGMAQLLT 304

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              + +     +     G  +          +                            
Sbjct: 305 TEVNTQLAAGYDLGGAAGSALFSFDASNPAGMLSVTDIKPSEL----------------- 347

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +     G    ++      +K+     +       +  +     +G +    SD+
Sbjct: 348 --GFSDNATNVGNATNLHALLALKDKSITISGI----GQTSFSDANTALVGKVAFTSSDN 401

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +++ V N +  +  +  GV+  EE + +++  ++Y  + K+I   +++    L  
Sbjct: 402 KQSITQTKNVLNSVILNRDSLSGVDSDEEGNNILEYSKAYRANMKVISIGEQLFSDFLAL 461

Query: 479 VK 480
           ++
Sbjct: 462 MR 463


>gi|297570285|ref|YP_003691629.1| flagellar hook-associated protein FlgK [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926200|gb|ADH87010.1| flagellar hook-associated protein FlgK [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 870

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/443 (13%), Positives = 129/443 (29%), Gaps = 14/443 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
            L  V N A+       +       N+ N D   Y R+      +             V+
Sbjct: 3   GLTHVLNTAKQALLTQQRSIQVTGHNVANVDTPGYSRQTHNIRANHAVQMGNALLGGGVS 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             T          + +   SS +G  +  Q    + E +  ++    +    +++  +S 
Sbjct: 63  PDTITRSYDQFMVERITRQSSLMGNLQAQQQSLRVVEPIF-NEARGLAMNDLLNQFWNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  S N       + V+ N   +  +F T   E+ + R+D    I+  + ++    S++ 
Sbjct: 122 QELSDNPESLAARQNVLQNGHLLSDHFKTMNDEIIRARSDIGTNIDTAVGDINSLTSQIA 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I     +K +A+D  DQRD L+++++ ++ IS     N    V  ++G  L E  
Sbjct: 182 ALNSRITSAEVAKAEANDLRDQRDNLVKELAGLVEISHFASKNGTYTVLMANGHPLVEGD 241

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    N     S           ++  Q      G ++   ++       +  +LD
Sbjct: 242 EAWQVSWSDNQLNWVSTDGSGKKVSRPLTGAQLGGKMGGWLEIHSELAPGNPNNYAGRLD 301

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  LI   ++                     D+                        +
Sbjct: 302 ALANALIRELNQVHSTG---SGTVKFADQLVGGDIGRPTSVTTGTVATGTASRNIAAGAI 358

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +  G                     +  ++ N+               +     +     
Sbjct: 359 QINGLDIGAINGAFPVHGLATTKAANTVEAINQADTGVSARLTTQANGVAITEADLNAVS 418

Query: 412 EKNRSDSHDLHMKSQVVFNHISE 434
             +         +  V  +++  
Sbjct: 419 AGDSFSFTVNGEEITVTLSNVDG 441



 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/374 (12%), Positives = 102/374 (27%), Gaps = 25/374 (6%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
           E  V + +  A     +  + +   E  I+      +     N A    +    DA    
Sbjct: 497 EAAVGDGSNGAATNALLFRNTNAGDESSITIDNLIFTPDDEDNPAGLSASMLGLDALAGE 556

Query: 192 D-QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
               D         +           +         L +     I      + T     +
Sbjct: 557 TIVADADHNTGQVTLFSDQRYTIKAGVDDTILAQLGLHDKSDDGITGNGRIAVTPDPLED 616

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
            + + G        +     +I          +P       E A     +    +     
Sbjct: 617 KVLLTGFKYGDELNTEDGSFEIWLYSADGSLALPEPVTVSLERAYSANDAAQAINQAILA 676

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETIC-VNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +               D +  +   + +      + ++ S       ++  F  +     
Sbjct: 677 AGGTSDGETPWVKASFDRQSGRFKLDPVAGHQFAFGADSSNFLQVAGLNTFFTGHSAGTI 736

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTN-----------------------VTLLEYARN 406
           G   +I    D      + +       +                        +L  +  +
Sbjct: 737 GVNRVIADNLDYMAAGKVGENGEIFPGDNRNALELSNLQHKDDIHFLGGRVSSLNGFYNS 796

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +G +             + +V N ++E      GV+L EE++ LIK + +Y  + +LI 
Sbjct: 797 LVGDIGNKGRTIDRNVEFNTLVLNQMNEMRDTVSGVSLDEEMANLIKFQHAYTAAARLIS 856

Query: 467 FTDKMLQTLLEGVK 480
            +D+ML TLL+ V+
Sbjct: 857 TSDEMLVTLLDTVR 870


>gi|293409448|ref|ZP_06653024.1| flagellar hook-associated protein FlgK [Escherichia coli B354]
 gi|331662488|ref|ZP_08363411.1| flagellar hook-associated protein FlgK [Escherichia coli TA143]
 gi|331672601|ref|ZP_08373390.1| flagellar hook-associated protein FlgK [Escherichia coli TA280]
 gi|291469916|gb|EFF12400.1| flagellar hook-associated protein FlgK [Escherichia coli B354]
 gi|331060910|gb|EGI32874.1| flagellar hook-associated protein FlgK [Escherichia coli TA143]
 gi|331070244|gb|EGI41610.1| flagellar hook-associated protein FlgK [Escherichia coli TA280]
          Length = 547

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|239817151|ref|YP_002946061.1| flagellar hook-associated protein FlgK [Variovorax paradoxus S110]
 gi|239803728|gb|ACS20795.1| flagellar hook-associated protein FlgK [Variovorax paradoxus S110]
          Length = 652

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 130/420 (30%), Gaps = 17/420 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS+   F    +  + A     +   N  N     Y R+  + + +              
Sbjct: 1   MSM---FQTGLSGLSVARSALMTTAHNTANVYTAGYSRQTALVSSNGGTTTGAGFIGNGA 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T +          L+   +A        S     + + AD       T  +     S
Sbjct: 58  RVTTVQRSYDGYLTAQLNGAEAAGAALASYGSQINRIDSLLAD--KTAGLTPLMQSFFAS 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++  +   ++    + +I  A+ +   F  + + +  +    + +IE     +  +  ++
Sbjct: 116 VQGVANTPADPAARQQLISAAQTLANKFRATDQYLTDLNGSVNDQIEGSTGQINTYAKQI 175

Query: 171 TVVNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N  I      A     +D +DQRD L+ ++ +I+G+  + +++    V+  +G TL 
Sbjct: 176 ASLNQQISQLSAMAGGQPPNDLMDQRDQLVSELGKIVGVKVLEQDSGQYNVFIGNGQTLV 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                       ++   T ++  +      VS      +  G +  LL  R   +   QN
Sbjct: 236 LGDRAAQLQAVSSAADPTRKAVALVGLTGTVSELNDDVIAGGSLGGLLAFRAETLTPTQN 295

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +  +A  L   F+E+  +  +   V G               +     +       ++ 
Sbjct: 296 AVGRLAMALGSEFNEQHKLGVDLNGVLGTDFFSQATAGVFSKARNGGNMVLGASVADTSQ 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
               D     K     +              D  +    FD V+    + T        +
Sbjct: 356 LTTSDYSVQVKDVAGTLTYSVTRLSDKQPMGDFTSFPASFDGVSLSPASGTAQAGDSFLV 415



 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/437 (9%), Positives = 114/437 (26%), Gaps = 2/437 (0%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           +         V     +   + D+     + +       ++   +    +  +  ++   
Sbjct: 216 VLEQDSGQYNVFIGNGQTLVLGDRAAQLQAVSSAADPTRKAVALVGLTGTVSELNDDVIA 275

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                   +  + +   +++ +G+  +    E  +           +  D   +    + 
Sbjct: 276 GGSLGGLLAFRAETLTPTQNAVGRLAMALGSEFNEQHKLGVDLNGVLGTDFFSQATAGVF 335

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
           +  R    + V+  ++   +      +    +        S           +      +
Sbjct: 336 SKARNGGNM-VLGASVADTSQLTTSDYSVQVKDVAGTLTYSVTRLSDKQPMGDFTSFPAS 394

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            DG +L          +        + +  + +     ++   +A P    KA+      
Sbjct: 395 FDGVSLSPASGTAQAGDSFLVQPTRTGARDMDVLVRD-TAKVAAASPLATGKAVGNKGTG 453

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +         +A  L G+ +     A N+ +      A  +   D       + T    
Sbjct: 454 ALSPAVVDSGYLATPLAGTVTLAYDAAANTLSGFPATSAVTVTLADGTSTNYAAGTAVPY 513

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               S      +          +   +      ++   ++     +    A      T  
Sbjct: 514 TAGASIRFDGIEVKLSGAPADGDTFTIGKNAGGVSDGSNALRLGALQRKTAMDGGTSTFN 573

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
                 +  +     +        + V   I  S  +  GVN  EE + L+  +Q Y  +
Sbjct: 574 GAFAKLVSEVGNRAMEIRVASATQEGVTGQIRASRDSISGVNQDEETANLLMYQQMYQAN 633

Query: 462 NKLIMFTDKMLQTLLEG 478
            K+I     M   +L  
Sbjct: 634 AKVIQTASTMFDAILGI 650


>gi|332298237|ref|YP_004440159.1| flagellar hook-basal body protein [Treponema brennaborense DSM
           12168]
 gi|332181340|gb|AEE17028.1| flagellar hook-basal body protein [Treponema brennaborense DSM
           12168]
          Length = 463

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/491 (9%), Positives = 114/491 (23%), Gaps = 41/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVTVV 53
           ++       +   N   +   I  N+ N +   + R                      V 
Sbjct: 1   MMRSLYSGVSGMQNHQTRLDVIGNNVANVNTTGFKRGRVNFQDMISQQLSGAAKPTTEVG 60

Query: 54  TQR----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +           +    +               +   +          
Sbjct: 61  GVNPKEVGLGVMVASIDTVFTQGNLQSTGVATDVAIQGNGFFVLKNGEETFYTRAGAFGL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N +  +  +  +          NT+      I     K+      N+    + 
Sbjct: 121 DSDGTLVNPANGLRVQGWMAQEANGEMILNTAGSPEDLIIPVGSKDPAKATQNVNFACNL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                + ++  + S           D++    S    +     N + + V  +       
Sbjct: 181 NKNTPEILEGASES-----------DIMKGTWSTEQKVYDSFGNEHMLSVAFARVPGNPN 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +  +  N+    +       DGV  +                   +   P  Q  
Sbjct: 230 QWQATVLIDPDNADVTQTRVGLGTTDGVANTFLVNFDNTGSLQSVTDSAGNVTNPTGQIV 289

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L         +         +++  P     +            I        Q  S  S
Sbjct: 290 LQ--------TSFTVTDSNPDADGNPYRQTMNINLGTIGSQQHTI-------TQSASQSS 334

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                         +   +     +   Y +  N+      +A  +    L +   N   
Sbjct: 335 TKAYYQDGYTMGYLDNFKIDSSGIITGVYSNGTNRVLGQIALATFSNQGGLEKAGDN--T 392

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ N S   ++          +         V+L E+ + +I  ++ +  S+K I   D
Sbjct: 393 YVQSNNSGLANIGTSGIAGKGSMLAGSLEMSNVDLTEQFTDMIVTQRGFQASSKTIQTAD 452

Query: 470 KMLQTLLEGVK 480
            +L T++   +
Sbjct: 453 TLLDTVMNLKR 463


>gi|254932015|ref|ZP_05265374.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           HPB2262]
 gi|293583567|gb|EFF95599.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           HPB2262]
 gi|328475667|gb|EGF46416.1| flagellar hook-associated protein FlgK [Listeria monocytogenes 220]
          Length = 506

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 159/520 (30%), Gaps = 55/520 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-------CVN 341
           +++  +  L  +  +      N        I D +K   N      +             
Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRLLEKFPG 346

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397
                +   +            +          I  +  S  K  +   +     N    
Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406

Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                              T   +    I  +  + S S           N +SES S+ 
Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GVN+ EE++ +++ +  Y  + K +   + M++ LL  +
Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|91776315|ref|YP_546071.1| flagellar hook-associated protein FlgK [Methylobacillus flagellatus
           KT]
 gi|91710302|gb|ABE50230.1| Flagellar hook-associated protein [Methylobacillus flagellatus KT]
          Length = 645

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/453 (14%), Positives = 145/453 (32%), Gaps = 17/453 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  +FN  +   N A    ++   NI NA+ + Y R+  + +                 V
Sbjct: 1   MSNIFNIGKTALNAAQVGISTTGHNIANANTEGYSRQVIVQSAGQAQAWGFGYLGNGTQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T +     +  + +   +S      +      +  + +         +  I     S+ 
Sbjct: 61  DTVKRVYNELLSRQI--SNSQSIASGINTQLSNINHINNMLADAEAGLSPAIQDFFASIN 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S   ++    + ++  AE +   FN     + +++   + ++   ++ +  +  E+  
Sbjct: 119 DLSSAPNDPASRQAMLSTAEALSSRFNGLGSRLLEMQGSVNAQLNASVNTVNHYAKEIAR 178

Query: 173 VNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N+ I   T S     +D LDQRD L+  +++ I  + IV++ N   V   +G  L   +
Sbjct: 179 LNEVIDVATTSTGQPPNDLLDQRDQLVLALNKEIKGTVIVQDGNRYNVSIGNGIPLVNGL 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +              G   S     ++  G I  L++ R   +   QN L 
Sbjct: 239 KSYSLTTVDSPTNPGRLEVAYQA-GATTSILAEQSLQGGVIGGLIEYRRESLDKAQNTLG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A  L  SF+ +      + +V G    +      N            +    ++    
Sbjct: 298 QIAVALAQSFNIQHQQGLTNGDVQGGNFFNIPSPQVNASSHNTGSADLASSIVDASLLTA 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG--INTNVTLLEYARNSIG 409
            D         +++  L+                  F    G     +  ++    N+  
Sbjct: 358 SDYRLRYDGSNYSITRLSDNTVQTFSSLPQTVDGVSFSLAGGSMSAGDQFMIRPTANAAA 417

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            L        D+   +  +    + S +   GV
Sbjct: 418 DLSVAVKQIEDIAAGAPTITTTAAGSNT-GSGV 449



 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/336 (9%), Positives = 84/336 (25%), Gaps = 4/336 (1%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
           + +            +    +          + A     AS   A D+  + D     I+
Sbjct: 313 QGLTNGDVQGGNFFNIPSPQVNASSHNTGSADLASSIVDASLLTASDYRLRYDGSNYSIT 372

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +   +    ++    V   DG +           ++       + +  + +    +   
Sbjct: 373 RLSDNTVQTFSSLPQTV---DGVSFSLAGGSMSAGDQFMIRPTANAAADLSVAVKQIEDI 429

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
              A       A       V+   +      +  L   F+            P       
Sbjct: 430 AAGAPTITTTAAGSNTGSGVISGARVSASYASSPLASPFTLSYNSGS-LGGFPAGEPITV 488

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                         TI  +     + + +    S +          A   +      ++ 
Sbjct: 489 TTSAGTTTTYPAGSTIPYSAGAAISVAGISFSLSGAPADGDQFTIAATTSNAAGDNRNAL 548

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
               + +    +    +        + ++     +          +      +     GV
Sbjct: 549 QLAALQNTKTMLGGTASYQGTFNQLVSYVGNRTRELQVTGAAENTLLAQSITAQQGESGV 608

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           NL EE   LI+ +Q+Y  + K++     + +T+L  
Sbjct: 609 NLDEEAVNLIRYQQAYQAAGKVMQIASTLFETVLSI 644


>gi|330808201|ref|YP_004352663.1| flagellar hook-associated protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376309|gb|AEA67659.1| flagellar hook-associated protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 688

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/445 (11%), Positives = 129/445 (28%), Gaps = 17/445 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ N   +  + +     +   NI N D   Y R+ T+ T                T+  
Sbjct: 2   SLLNIGMSGLSASQTALVTTGNNIANVDTAGYSRQQTVQTTKASNQYGNVFIGSGTTLAD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R       +  L   +S        Q      + + +D          ++K   S+++ 
Sbjct: 62  VRRVYNAFLEAQLKTTTSLNSDAAAYQGQITPLDSLLSD--SGTGLNGALTKFFASVQNV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +    +D   + ++ +A+ +   FN+ A ++ +   + +  +   +  +    + +  +N
Sbjct: 120 NAKPGDDASRQLLLSDAQALSNRFNSVANQLTEQSQNINGNLSNMVDQVNNLAATVAQLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   + +    +D LD R   ++++S   G   +   +  + +Y   G  L      +
Sbjct: 180 KKIAEVSNAGGAPNDLLDARSETIRQLSTFTGTQVVENGS-SLDIYLGSGQPLVMGNIVN 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 +          I ++    S +  S +  G+I  L++ R +V+    N+L  +A
Sbjct: 239 TLQAVPDKNDPGRIG--IQLNSGSSSMDLTSVLTGGEIGGLMRYRSTVLDPAMNELGRVA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            V+    +       +     G  +               S     N     N +     
Sbjct: 297 LVVADQMNSIQASGIDMNGAFGSNLF--TNINSAAQISQRSVASLNNSAGSGNFNIAIKD 354

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                   + V   +G    +    D  +                      N        
Sbjct: 355 SGKLTTNDYKVTFTSGTDYTVQRLPDGTSMGAFNTATTPPPVIDGFSMTFANGTAAAGDT 414

Query: 415 RSDSHDLHMKSQVVFNHISESYSNT 439
              +   +  + +            
Sbjct: 415 FKLTPTRNEAANIKTEMTDSKRLAI 439



 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/445 (8%), Positives = 110/445 (24%), Gaps = 19/445 (4%)

Query: 38  RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                 T       +         + D  ++     +      Q        +  +  + 
Sbjct: 260 SSSMDLTSVLTGGEIGGLMRYRSTVLDPAMN-ELGRVALVVADQMNSIQASGIDMNGAFG 318

Query: 98  NSPTHYISKLRDSLE---SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           ++    I+      +   +   N +        I ++ ++  N                 
Sbjct: 319 SNLFTNINSAAQISQRSVASLNNSAGSGNFNIAIKDSGKLTTNDYKVTFTSGTDYTVQRL 378

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
                +       +   V++            A D       L    +E   I T + ++
Sbjct: 379 PDGTSMGAFNTATTPPPVIDGFSMTFANGTAAAGDTF----KLTPTRNEAANIKTEMTDS 434

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
             + +    G  +       +        ++T++ +        +  N        K+  
Sbjct: 435 KRLAIAAPLGAAIVPGGSGTLTIPANGQPSMTTKLDIYDAATTTIVQNGIKNSMPVKVVF 494

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                D     +Q         L+ +   +                       +      
Sbjct: 495 GATSADGTSQAYQ---------LLDAKGVQISNGTIKPGESNTLSLSVPLKDASGAPIMD 545

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           S    V      + S      + +   +   +  +                 +       
Sbjct: 546 SSVPPVQRTVTFDMSIAGAPSNGASINVSLSQPGSLDNRNGTVLAGLQTAKTVD--TGSS 603

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           +  ++L +     +  +    +        +  + ++   +  +  GV+L EE   L+K 
Sbjct: 604 SKGISLNDAYGKLVEGVGAKAAQGKLDSAATGAILDNAKTARDSLSGVDLDEETGNLVKF 663

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGV 479
           +Q Y  S+++I    ++  TL+  +
Sbjct: 664 QQYYTASSQIIKAAQQIFSTLINSL 688


>gi|237653577|ref|YP_002889891.1| flagellar hook-associated protein FlgK [Thauera sp. MZ1T]
 gi|237624824|gb|ACR01514.1| flagellar hook-associated protein FlgK [Thauera sp. MZ1T]
          Length = 660

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 127/408 (31%), Gaps = 14/408 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N      + +     +   NI NA    + R+                      V
Sbjct: 1   MASLLNIGLTGLSASQAYLNTTSHNIANAATPGFHRQTVTQEARDPQYSGGAFFGTGTGV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                    + +  + +  S   +      F +  + + AD   +   T  +++   +L+
Sbjct: 61  TGVARSYSQLLEGQVLSADSRRAEYAAYSQFISQLDNVLAD--ADTGLTPALNEFFGALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N +     + ++ + + +   F T    + +I    + E+   + ++  + + +  
Sbjct: 119 NVTSNPTNVAARQALLSSGDTLSARFRTLDGRISEIAEGVETEMRSTLESINGYAAAIAE 178

Query: 173 VNDA--IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+   I     +   A+D LDQRD  + +++ ++ +ST+ + +    V+   G +L   
Sbjct: 179 LNERMVISRTGGAGSAANDLLDQRDQAIAELNRLVKVSTVEQRDGSTSVFIGSGQSLVMG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                                +  +  VV     S V  G +  LL  R       Q  L
Sbjct: 239 NRAKQLELGDQLDENGRSMITVRANSGVVEPLAESLVGGGTLGGLLAARREGTASAQRSL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  L   F+ +  +  + E   G           +    G+S  I          S 
Sbjct: 299 GLLATTLATEFNSQHALGLDLEGRLGGDFFRIGGVRVDPSDSGLSVRIDPGQVSSLTGSD 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  +   L ++      P          + +        + T  
Sbjct: 359 YSLRYDGAAFQLTDLATGNAVPAAQMQLVTEADGSTTIRAQGLVFTGA 406



 Score = 96.6 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 82/324 (25%), Gaps = 11/324 (3%)

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
              + ++  I     S     D+  + D    +++++   + +      +V      TT+
Sbjct: 337 PSDSGLSVRIDPGQVSSLTGSDYSLRYDGAAFQLTDLATGNAVPAAQMQLVTEADGSTTI 396

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                         +              + V++    AV           R     +  
Sbjct: 397 RAQGLVFTGARSTLTEPAFVYPTRYTAGAIEVANRDPRAVAAAAPVLASPTRGDGSSLRI 456

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            Q   ++R    + +E    A            +             +            
Sbjct: 457 EQSGLLSRGSAAAGTELGLPALKYTFNAVDKRFELDAAAPGAAGWPATLAYDPATSAAGE 516

Query: 348 PSFLRDGGS-----------VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
              L   G             +   +    N  G  D  N       +       +G   
Sbjct: 517 SFTLEGPGGVRLELKISGTPAANDVIALADNKGGVADNRNAALLGALQTDKLLFGSGGQA 576

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             TL       +  +     +          + +    S     GVNL EE + L++ +Q
Sbjct: 577 TATLNNAYAQLVAKVGSKTREVQAGERTQTSLLDQAKASRDAVSGVNLDEEAANLVRFQQ 636

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           SY  + K++    ++   +L   +
Sbjct: 637 SYQAAAKVMGVAQRLFDEILAIAR 660


>gi|206603517|gb|EDZ39997.1| Flagellar hook-associated protein (FlgK) [Leptospirillum sp. Group
           II '5-way CG']
          Length = 561

 Score =  144 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/443 (12%), Positives = 126/443 (28%), Gaps = 14/443 (3%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS +L + N  ++         ++  +NI N +   Y   +     +             
Sbjct: 1   MSGVLGILNIGKSGIEANEAGLSTAGQNISNVNTPGYTVENVQFDQTQPNHGSPGMVGNG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V     R    +  D  +    + +G     +   +  +        N   +  IS+   
Sbjct: 61  VRATGIRRVVNSFLDAQMIRQKTRMGFWESSRLSLSELDTYFTH-AQNQGLSKDISRYLS 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + E  + +  +     T+I   + + ++F+  A    + R    + +   +S +   LS+
Sbjct: 120 TWEVVANHPLDRSARATLITYGKNLAEDFHQMASLYSQTRNRLGELLTSSVSTVNADLSK 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I    A     +  +DQR  L+ +IS +         N  + ++   G     
Sbjct: 180 IAHLNREILRAEAGGESPNTLIDQRQQLMVQISTLTNAHFFTDKNGAITLHL-GGQAAIT 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +         +S                   +    +  GKI   L +RD  VP+ +  
Sbjct: 239 DIDSGRLEAVFDSSRNGYRILIHPPGHSGPPIDITDRLHGGKIGGYLDVRDKKVPLLEEH 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  +I   +                       ++ +       T+  N       +
Sbjct: 299 LDSLAHGIINHVNALHVQGFGLNGKTNQNFFLPTTTVEAQGSLPAGVTLTANAVNPDEAT 358

Query: 350 FLRDGGSVSKKFLW-NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
              D        +  +        + ++    +   +     V+G+  N           
Sbjct: 359 SPVDVTVSRSMIVVRDSSGKILRKESLSQGTGTVRVSGYLIRVSGVGKNEEAHVRVSGGN 418

Query: 409 GWLEKNRSDSHDLHMKSQVVFNH 431
                  S   +      +    
Sbjct: 419 DTRGAALSMQVNALDPEDLAAGQ 441


>gi|301023269|ref|ZP_07187066.1| flagellar hook-associated protein FlgK [Escherichia coli MS 69-1]
 gi|300397114|gb|EFJ80652.1| flagellar hook-associated protein FlgK [Escherichia coli MS 69-1]
          Length = 547

 Score =  144 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 133/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+ T               V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMTQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|85706142|ref|ZP_01037237.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217]
 gi|85669306|gb|EAQ24172.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217]
          Length = 448

 Score =  144 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/489 (8%), Positives = 128/489 (26%), Gaps = 65/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M++ +  N +    N  + + A+I  NI N+    Y R +             + +    
Sbjct: 16  MTISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESLVISGRGGSYSAGGV 75

Query: 56  RSENKNMFDK--VLHAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSL 111
           R+  + + D+   + + S+        + F   A    ++  +             R   
Sbjct: 76  RASTQRLIDQGGSIVSSSNPTDLAVRDRGFLPVARVTDLTVSNGDPQMLLTTTGSFRTDP 135

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +      S  +L     +    + +    ++  ++ ++ + ++      +++        
Sbjct: 136 QGRLVTESGLVLLGWPANPDGTIPEFSRDTSGGLEPVQINVNQLTGEPTTSI----KLGI 191

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +        +        ++  D L    +  +                          
Sbjct: 192 NLPATDTRFDSIGDPQQLSIEYFDNLGTSENISLQF---------------------VPT 230

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
              +      +  +T  +    + G  V +   +    G +  +  +           + 
Sbjct: 231 VATVGLSNEWTVILTDSAQGNALIGEYVLTFDDARETGGTLLDVQTVTGGAFDPTTGTII 290

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                     +   P   +                                Q   + + L
Sbjct: 291 VDVAGGPIEINIGRPGTSD-----------------------------GLSQLSDSFAPL 321

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 S         +     +   +    ++     P+  +     ++   +    + 
Sbjct: 322 SIAKDGSPVGNMTSAEVDANGFVRASFDTGVSRIIYQVPLVDLPNPNGMVSMDQQ--TYQ 379

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S S  L          I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 380 PSPDSGSFFLWDAGDGPTGDIVAFARQESATDVARELTDMIQTQRAYSSNAKVIQTVDEM 439

Query: 472 LQTLLEGVK 480
           LQ     ++
Sbjct: 440 LQETTNIIR 448


>gi|315281368|ref|ZP_07870006.1| flagellar hook-associated protein FlgK [Listeria marthii FSL
           S4-120]
 gi|313614985|gb|EFR88491.1| flagellar hook-associated protein FlgK [Listeria marthii FSL
           S4-120]
          Length = 506

 Score =  144 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  +S   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMSGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G  +          Y ++ S             W +            +      +    
Sbjct: 357 GGVDHSIDTLGTSTYVTDVSDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           N +SES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|284920905|emb|CBG33968.1| flagellar hook-associated protein 1 [Escherichia coli 042]
          Length = 547

 Score =  144 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGTGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|332161328|ref|YP_004297905.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605248|emb|CBY26746.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325665558|gb|ADZ42202.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330861098|emb|CBX71365.1| flagellar hook-associated protein 1 [Yersinia enterocolitica
           W22703]
          Length = 554

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 143/400 (35%), Gaps = 14/400 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  + A    +++  NI N     Y R++T+   +             V
Sbjct: 1   MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNTIFAQNGGTLSPAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           +V     E        L A  +            +  + + ++   +N+ +  +     +
Sbjct: 60  SVTGVNREYNAFITNQLRASQTQSSGLTTYYQQISQIDNLLSNT--SNNISTTMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++   N  +D   KTV+  AE +V  F  + + ++ +    +++I    + +  +  ++
Sbjct: 118 LQNLVSNAGDDAARKTVLGKAEGLVNQFQNADKYLRDMDTGVNQKISDSATQINNYAEQI 177

Query: 171 TVVNDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +ND I     +S  + +  LDQRD L+ ++++I+ ++   ++ +   V  + G +L +
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVAVTVTQQDGDTYNVSFAGGLSLVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +S   T  +               S +  G +   L+ R   +   +NQ
Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYNRGSGDTMEIDESRLTTGSLGGTLKFRSEALDSARNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L ++A V+  SF+ +     ++    G       +    K  +   +         ++  
Sbjct: 298 LGQLALVMADSFNTQHKAGFDANGDAGTDFFSFAQPTALKNAKNQGDAGLTVAYTDTSKV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
              D         W V  L+    +        N     +
Sbjct: 358 KASDYSVEFDGTNWQVTRLSDNTKVPTTAGTDANGKPTLN 397


>gi|290894002|ref|ZP_06556977.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J2-071]
 gi|290556448|gb|EFD89987.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J2-071]
          Length = 506

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/520 (14%), Positives = 160/520 (30%), Gaps = 55/520 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342
           +++  +  L  +  +      N        I D ++   N      +    +        
Sbjct: 287 KIETFSNGLAKALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPG 346

Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397
                +   +            +          I  +  S  K  +   +     N    
Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVNDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406

Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                              T   +    I  +  + S S           N +SES S+ 
Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GVN+ EE++ +++ +  Y  + K +   + M++ LL  +
Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|255523748|ref|ZP_05390714.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans
           P7]
 gi|255512617|gb|EET88891.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans
           P7]
          Length = 649

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 90/241 (37%), Gaps = 19/241 (7%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------- 46
           MS L    N +++      +       NI NA+   Y R+      +             
Sbjct: 1   MSGLFGTLNISKSGMFAQQRCIDVTSHNIANANTDGYSRQRAELQTTKPFPMPSVNNAVG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V V T      +  D  +       GQ +    F +  E +  ++  +   + 
Sbjct: 61  PGQLGTGVEVTTIDRIRDSFLDYQIRVEKGVDGQYKGRDKFLSQLENIM-NEPTDTGISK 119

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I    D+  +   N  E      V  N   +  + N +  E++K++ +    I+ ++ +
Sbjct: 120 DIGNFFDAWNTLGTNAKESNSRSIVAQNTLTLTTDLNHTYNELEKLKENTQTVIKDDVFD 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L ++  +N  I     + ++ +D +D+RD+LL ++SE  GI+   +      V TS
Sbjct: 180 INSKLKQIDQLNREIIQVRVAGNNPNDLMDRRDLLLDQLSEKFGITVDRKQFEGNDVTTS 239

Query: 223 D 223
           D
Sbjct: 240 D 240



 Score = 98.2 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 1/227 (0%)

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           I+    ++       KG I  +     +     +          I            + N
Sbjct: 423 IESQEKNAVVDVTDSKGNIIEVNNFFVNADAQKKGVYTGTDLSKIEDAEADITAGNITIN 482

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
              +     IK            T   +         LRD     +    +        D
Sbjct: 483 QAIIDDPMKIKTAAKYDGNNKPLTGESDGNRAVAVETLRDSLMTIQNIDPDNSTKTKKSD 542

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
            ++   +  N     + +    + +TL  Y ++++  L     ++         +    +
Sbjct: 543 FLDGIFE-VNSKLGVNAIINKTSGMTLDSYFKDTVDRLGIQEQEAKKTVTNQASLLAGFT 601

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +S  +  GV+L EE++ L++ +  Y  + KLI   D++L  ++ G+K
Sbjct: 602 QSRDSVSGVSLDEEMANLVQFQHCYQANAKLISTVDQLLDVVINGLK 648


>gi|206974984|ref|ZP_03235899.1| putative flagellar hook-associated protein [Bacillus cereus
           H3081.97]
 gi|206747003|gb|EDZ58395.1| putative flagellar hook-associated protein [Bacillus cereus
           H3081.97]
          Length = 415

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/473 (12%), Positives = 142/473 (30%), Gaps = 71/473 (15%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKNMFDKVL 67
              +  +N+ N     YVR+                      V  +        +  K  
Sbjct: 2   GLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQTLGVDRITDEVKTKQF 61

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
           +   S +       S  +  E M      N S +  +    ++    +KN  +     T+
Sbjct: 62  NDQLSQLSYYNYKNSVLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPDQSNYYDTL 120

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
           I    +     N  A+ +  + A   ++IE  ++   R    L   N  I    A     
Sbjct: 121 ISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEANQKI--GQAGTQVP 178

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
           +  LD+RD ++ ++S+ + I     + N  +        L                T   
Sbjct: 179 NQLLDERDRIVTEMSKYVNIEVSYESMNPNIASVRMNGVL----------TVNGQDTYPL 228

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           + N       V        +  G IK+ +  +   +  ++  L+E+   +    +     
Sbjct: 229 QLNKTKEPMSVEIYGSEIPLTSGAIKSAIDTKGQ-IASYKKNLEELMGSVKNQVNTVM-- 285

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                               +      ++ + +NP++ ++ S ++     + K       
Sbjct: 286 ------------------GKDFFVGDYAKELKLNPEFANDFSKMKISAETANKLAGITDE 327

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                                         ++        I  +  ++S+ +        
Sbjct: 328 DYKDG-------------------------LSYKNALDQFIVKVASDKSEVNGYQKIHGD 362

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   I +   +  GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 363 LLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 415


>gi|146278769|ref|YP_001168928.1| hypothetical protein Rsph17025_2736 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557010|gb|ABP71623.1| protein of unknown function DUF1078 domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 474

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/491 (10%), Positives = 126/491 (25%), Gaps = 28/491 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53
           M++ +  N         + + ASI  NI N+    Y R D                 +  
Sbjct: 1   MTISSSLNAGVAGLYANATKLASIADNIANSGTYGYKRADADFESMVITQSANSGTYSAG 60

Query: 54  TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRD 109
             R+    + ++   + + S+A+      +    +  +  + +    +          + 
Sbjct: 61  GVRANTLRLVEERGAIVSTSNAMDIAISGRGMLPVVRETSLGSTTGNDALLMTRTGSFKT 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                 K  +  +L     +    V      S  ++Q +   A++      + +   ++ 
Sbjct: 121 DPNGVLKTDTGLVLLGWPANADGTVPTMSRDSISQLQPVVIAANQTAADPTTRMNLGVNL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                      +        F +       ++S    I T+  ++           +   
Sbjct: 181 PAERTKLGASASPLTVAVEYFGNLGTSETLQVSYYPTIPTVAADSPTNKWTMVIQDSASS 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                I +E   S   +     + + G   + +                 D         
Sbjct: 241 DRTIAI-YELQFSDARSGGGTLLDLSGATPAGSPAVKPLSTFSPVAGVSFDVDPYGAGTP 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
               A                +  +               L  G   +     Q   + +
Sbjct: 300 TASPAYNSATGQVTLAVGGSAANTLD--------------LTLGRPGSASALTQVSGDFA 345

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 + S         +     +   Y   F +     P+  +     L      +  
Sbjct: 346 QTGITKNGSPVGNLTGVEIDAGGLIKATYDTGFTRVIYQIPLVDVPNYNGLTALNNQTFA 405

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S S  L          +          ++ +EL+ LI+ +++Y+ + K+I   D
Sbjct: 406 I--SPDSGSFYLWDAGDGPTGDVVGYAREGSTTDVAQELTNLIQTQRAYSSNAKIIQTVD 463

Query: 470 KMLQTLLEGVK 480
           +MLQ      +
Sbjct: 464 EMLQETTNLKR 474


>gi|218461125|ref|ZP_03501216.1| flagellar hook-associated protein FlgK [Rhizobium etli Kim 5]
          Length = 313

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 1/308 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVQINRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +     SS    Q+ L       + +   + Y  SP+ Y+   ++ L+++      
Sbjct: 61  DALLRQYLKTSSQDSAQQTLLGGLEDLKSIMGGNDYETSPSTYLGVFQEKLQAFRTTPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA+ADKEI   +  L   LS+    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRANADKEIATAVDKLNTLLSQFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TAS  DA   LD+R+ +L++ISEI+G+S   R+NNDMV+ T DGT LFETVPR + F+  
Sbjct: 181 TASGTDASGALDEREKVLKQISEIVGVSATTRDNNDMVLSTPDGTILFETVPRKVTFKSQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + YT +   N ++IDGV +   +GS     G +++LLQIRD + P FQ QLDE+AR L+ 
Sbjct: 241 DVYTASIVGNSVYIDGVALPLGKGSTTTGQGSLQSLLQIRDEIAPNFQKQLDEIARGLVS 300

Query: 300 SFSEKDPI 307
            F E++  
Sbjct: 301 LFKEQNTA 308


>gi|257457611|ref|ZP_05622778.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580]
 gi|257444997|gb|EEV20073.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580]
          Length = 463

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/491 (9%), Positives = 118/491 (24%), Gaps = 41/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++       +   N   +   I  NI N +   + R                 R   +  
Sbjct: 1   MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDLISQQLSGASRPTEEVG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   S          
Sbjct: 61  GVNPKEVGLGMMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYTRAGAFGV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N +  +  +  +   E        ++ + + +     ++I+   +    +   
Sbjct: 121 DRDGTMVNPANGMRVQGWMAQ-EVDGTRLINTSAQTEDLIIPIGQKIDARATTSVNYACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      +           +  ++  VL    +    +       +++ +  S       
Sbjct: 180 LDKRLPELP----------ENANRAQVLESTWTTEFKVYDTFGETHELNLSFSRVPGTQN 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +N +  N+    + +     +G   +                    SV     N 
Sbjct: 230 QWLATVNVDPENAEATETRTGVGTTEGTGNTFTVTFDNYGH--------LASVTDTAGNA 281

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             E  +VL+             +  P     D            I        Q+    +
Sbjct: 282 SAEAGQVLVQVSYNVPGATAGEDGAPVRHTFDINLGEIGTSRNTI-------TQFAERST 334

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +   Y +  +       +AG      L +   N   
Sbjct: 335 TKAYEQDGYAMGYLENFKIDQSGIITGVYSNGVSHEIGQLAMAGFANQGGLEKAGEN--T 392

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ N S   ++     +    +         V+L ++ + +I  ++ +    K I  +D
Sbjct: 393 YVQSNNSGIANITTSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD 452

Query: 470 KMLQTLLEGVK 480
            ML+T+L   +
Sbjct: 453 TMLETVLNLKR 463


>gi|90408060|ref|ZP_01216231.1| flagellar hook protein [Psychromonas sp. CNPT3]
 gi|90310817|gb|EAS38931.1| flagellar hook protein [Psychromonas sp. CNPT3]
          Length = 473

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/489 (10%), Positives = 120/489 (24%), Gaps = 34/489 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A     S   NI N +   +            N             V+ 
Sbjct: 2   SFNIALSGISAAQTDLDSTANNIANVNTVGFKESRAEFESVYANSLFTNSKTKVGDGVST 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L    + +        F A    +   D             + + E++ 
Sbjct: 62  AAVAQQFHQGSLKFTQNPLDLAITGSGFFATAGNLEDRDLS----YTRSGTFKLNSENFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S + L    ++          ++ + +Q            EI       +    ++ 
Sbjct: 118 VDNSGNYLQAFPVNEDGTSSSVSLSTTQPIQIPETAGTPIPTSEIGITLNLPAGDKALDP 177

Query: 176 ----AIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS--TIVRNNNDMVVYTSDGTTLFE 229
                    T +   +    D         +  +     +    N  +   T DG  +  
Sbjct: 178 AKFDPDDPDTYNNATSVTIYDSLGESHITTTYYVKPENASYTGENQWITFVTVDGKPVDV 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                   +   +Y V ++ + +       +S             L              
Sbjct: 238 WDKAGGTGQVAGTYDVDADGDGVADGTPQAASYVDKDGNVHTGAVLKFDSVGAYKGSSPV 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +                +  +  +        G+        Q  +       Q+ S   
Sbjct: 298 VLTF-----------QSLGVDDPSSAAGGDGAGVLSPGADGAQRFTLNFKTPTQFSSAFE 346

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     +   Y +  ++      +        L +       
Sbjct: 347 VTSLEQNGLTVGRLTGVEIGKDGLVKATYSNGTSQPLSRVSIVRFRNEQGLTQTGS---S 403

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W+    S        +   F  ++ +      VNL  EL  LI  ++++  +++ +   +
Sbjct: 404 WIATQNSGEPLAGEANSGSFGAVNSAALEQSNVNLTTELVDLITAQRNFQANSRALEINN 463

Query: 470 KMLQTLLEG 478
            + QT+L+ 
Sbjct: 464 TLQQTILQI 472


>gi|46906956|ref|YP_013345.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46880222|gb|AAT03522.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 506

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 160/520 (30%), Gaps = 55/520 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342
           +++  +  L  +  +      N        I D +K   N      +    +        
Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346

Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397
                +   +            +          I  +  S  K  +   +     N    
Sbjct: 347 VTRSGDTLTIGGVDHAIGTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406

Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                              T   +    I  +  + S S           N +SES S+ 
Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GVN+ EE++ +++ +  Y  + K +   + M++ LL  +
Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|331646340|ref|ZP_08347443.1| flagellar hook-associated protein FlgK [Escherichia coli M605]
 gi|281178191|dbj|BAI54521.1| flagellar hook-filament junction protein 1 FlgK [Escherichia coli
           SE15]
 gi|330910896|gb|EGH39406.1| flagellar hook-associated protein FlgK [Escherichia coli AA86]
 gi|331045092|gb|EGI17219.1| flagellar hook-associated protein FlgK [Escherichia coli M605]
          Length = 547

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 132/420 (31%), Gaps = 14/420 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +  +                 +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +         ++   
Sbjct: 299 GQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDTSAVL 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         W V  LA           +    F    +    T      +    +  
Sbjct: 359 ATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSD 418


>gi|226223336|ref|YP_002757443.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           Clip81459]
 gi|254824015|ref|ZP_05229016.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J1-194]
 gi|225875798|emb|CAS04501.1| Putative flagellar hook-associated protein FlgK [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593243|gb|EFG01004.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J1-194]
          Length = 506

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 160/520 (30%), Gaps = 55/520 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342
           +++  +  L  +  +      N        I D +K   N      +    +        
Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346

Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397
                +   +            +          I  +  S  K  +   +     N    
Sbjct: 347 VTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406

Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                              T   +    I  +  + S S           N +SES S+ 
Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GVN+ EE++ +++ +  Y  + K +   + M++ LL  +
Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|325274800|ref|ZP_08140828.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51]
 gi|324100068|gb|EGB97886.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51]
          Length = 440

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/485 (10%), Positives = 123/485 (25%), Gaps = 59/485 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55
            FN   +    A++       NI N     +                 T + ++V     
Sbjct: 2   SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKSVIGTGV 61

Query: 56  R--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +  + ++      ++A   A+        F AL +         +             E 
Sbjct: 62  KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDN-------GSKIYTRAGAFYSDKEG 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y  N     L    +    +++Q   T                +L+I          +++
Sbjct: 115 YVVNAGGANLQGYAVGEDGKIIQGVLT----------------DLQIDTSNLTPKPTSLI 158

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            + I   + +   +    D  +      +    +     N + M  Y             
Sbjct: 159 TEKINLNSGATAPSVTPFDPTNASSYNFTFNTPVYDSQGNEHQMNQYFIKDDVTNTWSMH 218

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                +  +   ++      +      +    A+  G +   L I +  +          
Sbjct: 219 TTIDGRNPANPASTTPLVNAVPFKSDGTLDKDAMAAGDVVGGLSIGEDKIFQL------- 271

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                           +          +   +       G+   +    QY ++ + +  
Sbjct: 272 ---------------NDWIPAQKNAAGEWSANGAVANADGVKLDMLGATQYNASSAEIAK 316

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  ++     L   + +  +K      +A       L         W E 
Sbjct: 317 TQDGFATGELSGLSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGG--TNWKES 374

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S    +          I+        V+L  EL  LIK + +Y  + K I     ++Q
Sbjct: 375 YASGVPVIGAPDTGTLGQITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434

Query: 474 TLLEG 478
           T+++ 
Sbjct: 435 TIIQM 439


>gi|317406195|gb|EFV86444.1| flagellar hook-associated protein FlgK [Achromobacter xylosoxidans
           C54]
          Length = 558

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 138/429 (32%), Gaps = 19/429 (4%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSEN 59
           A    N +    A+   NI NA    Y R+  M + +             V V T     
Sbjct: 7   ALGGLNASQAGLATTGHNINNATTVGYNRQRVMISTAGAQATTNGYIGRGVQVDTVVRSY 66

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +   K L     +  Q +      +    + AD          ++    S+ + +   +
Sbjct: 67  DSFLYKQLVGAQGSGAQLQAQLDQVSQVNNLFAD--RTVGIAPGLTNFFTSMNTVASKPA 124

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI-- 177
           +    + ++  A  +     ++ +E+Q  R   + +I   +  +  +L+ +  +N  I  
Sbjct: 125 DPAARQDLLGKANSLTTQIRSAYQEMQNQRLGLNTQITTTVEQVNSYLTRINDLNSQIST 184

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
               A  +  +D LDQRD  + +++++IG++T  + +   +   S G  L          
Sbjct: 185 ARAKAGGNPPNDLLDQRDQAVSELNQLIGVTTYEQGDKLSISLASGGQALLSGDTVYPLQ 244

Query: 238 EKMNSYTVTSESNPIFIDGVVVS-----SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
              ++  V+       +               + V  GK+  LLQ R + +   Q QL +
Sbjct: 245 AVSSAKDVSRTVIAYTLPAGSGGKTVAVELNDAEVTGGKLGGLLQFRATSLDFMQAQLGQ 304

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  L  SF+E+     ++   PG       K          S           N    +
Sbjct: 305 MAVGLALSFNEQHRQGLDTAGNPGTDFFSIGKPQGVPNAGNKSGAQISGEFTNVNNINAK 364

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           D         + V  L     + N            D  A +   +T+    +    W  
Sbjct: 365 DYEISFDGTNYMVTRLPEGTQVYNGPATGTPPTATLDLNAEMGVTLTIDSPPQAGDKWAL 424

Query: 413 KNRSDSHDL 421
               D+   
Sbjct: 425 SPTRDAARD 433


>gi|217965197|ref|YP_002350875.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           HCC23]
 gi|217334467|gb|ACK40261.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           HCC23]
 gi|307570244|emb|CAR83423.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes L99]
          Length = 506

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 78/510 (15%), Positives = 156/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V+  +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVIDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GISETICVN---PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G  +          Y ++ +             W +            +      +    
Sbjct: 357 GGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           N +SES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|116872094|ref|YP_848875.1| flagellar hook-associated protein FlgK [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740972|emb|CAK20092.1| flagellar hook-associated protein 1-related protein [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 506

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 79/510 (15%), Positives = 155/510 (30%), Gaps = 35/510 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTIAADTDAAIQDLNTLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLGTMAGYAGISISAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGKI 272
                        + T    S       +   S   S                    G  
Sbjct: 237 VQGDETTEIMSTRTATGFEFSVDGQKLNMPEGSIIASVRVNQNEIKSYQEKIETFSNGLA 296

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + L  
Sbjct: 297 KALDDIQVKNVNKTMDDLQKINDALQANPTDEKLLSNREELLRQLEKFPGVTRSGDTLTI 356

Query: 333 GISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           G  +          Y ++ S             W +            +      +    
Sbjct: 357 GGVDHAIESLGTSTYVNDVSDFSIPIFTQSAGKWILNPAITNNAENKPFLGVIAPDIASL 416

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    T   +    I  +  + S S           N +SES S+  GVN+ EE++
Sbjct: 417 KTDKNIQGTTFPNFMDGIITEVATDASKSSATLAADTQALNSLSESKSSLEGVNIDEEMT 476

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 NIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|228933022|ref|ZP_04095885.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826623|gb|EEM72394.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 420

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 138/479 (28%), Gaps = 71/479 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKN 61
              A     +  +N+ N     YVR+      +               V  +        
Sbjct: 1   MLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSSEQKIGYGVQTLGVDRITDE 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +  K  +   S +     + S  +  E M      N S +  +    ++    +KN  + 
Sbjct: 61  VKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFFNAFREVAKNPEQP 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               T+I    +     N  A+ +    A   ++IE  ++   R    L   N  I    
Sbjct: 120 NYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAGSLAEANKKI--GQ 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A     +  LD+RD ++ ++S+   I     + N  +        L              
Sbjct: 178 AGTQVPNQLLDERDRIITEMSKYANIEVSYESMNPNIASVRMNGVL----------TVNG 227

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T   + N                +  G I++ +  +   +  ++  L+E+   +    
Sbjct: 228 QDTYPLQLNKEKEPMTAEIYGSEIPLTSGAIQSAIDTKAK-IASYKKNLEELMSSVKNEV 286

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +          +                        + +NP++  + S ++     + K 
Sbjct: 287 NTVMGKEFFVGDQAK--------------------DMKLNPEFAKDVSKMKISAETANKL 326

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                                               ++  +     +  +  ++S  +  
Sbjct: 327 AAITDGNYKEG-------------------------LSYKQALDQFVVGVASDKSAVNAY 361

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +   I +      GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 362 QKIHVDLLEGIQQEKMGVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 420


>gi|254853091|ref|ZP_05242439.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           R2-503]
 gi|300764517|ref|ZP_07074510.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes FSL N1-017]
 gi|258606440|gb|EEW19048.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           R2-503]
 gi|300514871|gb|EFK41925.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes FSL N1-017]
          Length = 506

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 160/520 (30%), Gaps = 55/520 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------ 342
           +++  +  L  +  +      N        I D +K   N      +    +        
Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPG 346

Query: 343 -QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN---- 397
                +   +            +          I  +  S  K  +   +     N    
Sbjct: 347 VTRSGDTLTIGGVDHTIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFL 406

Query: 398 ------------------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                              T   +    I  +  + S S           N +SES S+ 
Sbjct: 407 GVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSL 466

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            GVN+ EE++ +++ +  Y  + K +   + M++ LL  +
Sbjct: 467 EGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML 506


>gi|222112279|ref|YP_002554543.1| flagellar hook-associated protein flgk [Acidovorax ebreus TPSY]
 gi|221731723|gb|ACM34543.1| flagellar hook-associated protein FlgK [Acidovorax ebreus TPSY]
          Length = 672

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 122/408 (29%), Gaps = 17/408 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MSL    N              +   NI N     Y R++                   V
Sbjct: 1   MSL---LNVGARALLANQVALQTTGHNIANVSTAGYSRQNVAMETVQGQFTGSGYIGNGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T    +  +  +   A  +      +        + +       +     I+ + +S
Sbjct: 58  QVATILRNHNELLTRQAAAAQAVQAGDTVRAERLGQLQDVFQ--GGTSGLGAAITDMLNS 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L     + ++       +   +E+     +SA ++Q+I    +++++ + + +      +
Sbjct: 116 LADVVSSPTDITARTVTLTRMDEMAARMRSSAEQLQEIAYSVNEQLQNDATRVNSLAKSI 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             VN+ I     +    +D LD+RD L++++++ I  + I  ++  + V+      L   
Sbjct: 176 ADVNEQIARVKGNGQTPNDLLDKRDQLIRELNQFIQTTQIPADDGTVGVFIGGSQALVLG 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                     +     S+   +F    G          +  G++  LL+  +  +   +N
Sbjct: 236 GKASEVLIAESQQFPGSQLTQLFFKPAGGSPVELNEGMLGGGEVAGLLRFANQDLAEGRN 295

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  MA  +  + + +  +    +   G  +                  I       ++ 
Sbjct: 296 LLGRMALAIGRTMNYQQGMGLTLDGQAGKPLFSEPDKAPGYTSGTAQGFIDFQTPLGTSE 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
               D              + G    ++        N +      ++ 
Sbjct: 356 FAASDYEVRFTGGPTPTGEVPGQIIRLSDGKTINVANLMASAGTQMDG 403



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 3/207 (1%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                     V          A  +  ++ +  P            +             
Sbjct: 467 GQHWDATAGKVVATGVLNLPPAGGVQLTYRDGPPSGFVITGTNDQPLNLPPPAPYTPGTT 526

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +        +       L+               L+G                +     
Sbjct: 527 VVPYVPGEPIRIDGWSITLQGTPKDGDTVTVGDAKLSGD---WYTRNAGNASALMALRDV 583

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
            +    TL +     +  +      +      S  + +++  S +   GVNL EE + LI
Sbjct: 584 KMFDESTLSDGYAGLMAQVGTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLI 643

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +Q+Y  S K++     +   L++ +
Sbjct: 644 QYQQAYQASAKMLQIAQNIFDNLIQTM 670


>gi|237731013|ref|ZP_04561494.1| flagellar hook-associated protein FlgK [Citrobacter sp. 30_2]
 gi|226906552|gb|EEH92470.1| flagellar hook-associated protein FlgK [Citrobacter sp. 30_2]
          Length = 552

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 133/422 (31%), Gaps = 18/422 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  + A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E  +     L A  +            +  + + +    +   +  +     SL+
Sbjct: 61  SGVQREYDSFITNQLRAAQNQSSGLTTRYEQMSKIDNLLSSKTSSI--STSMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  A+ +V  F T+ + ++      +  I+  +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKADGLVNQFKTTDQYLRDQDKQVNTAIKASVDQINNYSKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    +D LDQRD L+ ++++I+G+   +++     +  ++G +L + 
Sbjct: 179 LNDQISRMTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSIQDGGTYNLTMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S      +                 +  G +  LL  R   +   +N L
Sbjct: 239 SNARQLAAVPSSDDPNRTTVAYVDGVAGAVEIPEKLLNTGSLGGLLTFRSQELDQTRNTL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G               +             S+   
Sbjct: 299 GQLALAFASAFNAQHKEGFDANGDQGKDFFAIGSPEVFNNAKNTGTGSLSAKITDSSAVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF----NKNFIFDPVAGINTNVTLLEYARN 406
             D   V     W V  LA                       +  A  N + T+   +  
Sbjct: 359 ATDYKIVFDGTDWQVTRLADNTSFKATVTGGKMSFDGMEITVNAGAKANDSFTVKPVSNA 418

Query: 407 SI 408
            +
Sbjct: 419 IV 420



 Score = 84.3 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 8/223 (3%)

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
               ++  GS   K    + +Q  D  +                SF         S +  
Sbjct: 337 NNAKNTGTGSLSAKITDSSAVQATDYKIVFDGTDWQVTRLADNTSFKATVTGGKMSFDGM 396

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
            + +  G K  D+   + +S  I       ++ S +             +          
Sbjct: 397 EITVNAGAKANDSFTVKPVSNAIVDMKVMVTDESKIAMAQVSKNDTDPTIDKGKSDNRNG 456

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               D   K  +         N T  +     +  +    +           V   +   
Sbjct: 457 QKLLDLQTKATV--------GNKTFNDAYATLVSDVGNKTATLKTSATTQNNVVTQLYRQ 508

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  GVNL EE   L + +Q Y  + +++   + +   L+  
Sbjct: 509 QQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANALFDALINI 551


>gi|83593864|ref|YP_427616.1| hypothetical protein Rru_A2529 [Rhodospirillum rubrum ATCC 11170]
 gi|83576778|gb|ABC23329.1| Protein of unknown function DUF1078 [Rhodospirillum rubrum ATCC
           11170]
          Length = 452

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/492 (15%), Positives = 162/492 (32%), Gaps = 52/492 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           MS+ ++    ++    A  Q A    N+ NA    Y  +   T+        V       
Sbjct: 1   MSIASIIATGRSGILGAQAQIAVTSTNLTNAGATGYTAKSASTSTQVYGGKAVGVNVVGY 60

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 +    +   +S       + S+ +            +      + L+ ++ +  
Sbjct: 61  GNSVDQILAADVVKSASTAAYDDTIASYLSSVLNSYGTTAKGSPLESATTALQTAVSNAV 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              ++      V+   E   ++ NT +  +Q  R  AD+ +  E+  +   L +L  +N 
Sbjct: 121 TAGADSDSVDKVVATLETWTKSLNTLSSAIQSSRTAADQHVAEEVETINGLLGDLDKLNS 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A+ +   D  DQ+  LL  ++  + I+       ++ V+T  G +L  +    +
Sbjct: 181 EFSKAKAAGNPTADIEDQQRTLLTSLATHVDINYYTTATGELNVFTKGGKSLLTSSVHKL 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKALLQIRDSVVPIFQNQLD 291
             E        +    I +DG  V              G + ALL +RD+ +P  Q  LD
Sbjct: 241 AAEPTGILKAGNPGAKITLDGQTVVDPTVDPPIKELTGGTLGALLTMRDTTLPALQKDLD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             A  L    +   P                                             
Sbjct: 301 AFATDLTTIINTVYPG----------------------------------------LIST 320

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA---GINTNVTLLEYARNSI 408
              G+   K        +G  D +     + ++   F          +  TL+      +
Sbjct: 321 TPAGASEIKVADPTAITSGDTDKMKGLWTALSEPITFSASTDGTMGASKTTLISRVSAIV 380

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    + ++     S      +S+ + NT GVN++EE + ++  +QS+ +++++I   
Sbjct: 381 DNVADLSTAANSKASLSAKTATALSDKFDNTYGVNVEEETAKMLVFQQSFQMTSQVITTA 440

Query: 469 DKMLQTLLEGVK 480
            +M  TL+  +K
Sbjct: 441 REMFNTLMSMMK 452


>gi|296126058|ref|YP_003633310.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563]
 gi|296017874|gb|ADG71111.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563]
          Length = 441

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/491 (9%), Positives = 111/491 (22%), Gaps = 63/491 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + R                 + +    
Sbjct: 1   MMRSLFAGVSGLQNHQTRMDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +        E    +   NNS          
Sbjct: 61  GINPQQVGLGMMVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N S             +V         E  ++  +    +E  I  +      
Sbjct: 121 DRDGYLVNPS----------IGYKVQGWNAVLNPETGEMELNTAAGVEDLIIPVGSKDPA 170

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               N                                        +   +   D T +  
Sbjct: 171 RATANTKYFCNLQKSG---------------------------ETHQSDLTIYDSTGIPR 203

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +        +N + +T +        V VS+             L+      +    + 
Sbjct: 204 QLRATFTRTDVNRWDMTIDIPDATEGSVSVSAGDPVEGGGNNTFQLVFNDAGSLISVSDG 263

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            +     ++             E            +    L  G         Q+ S  +
Sbjct: 264 TNTQTEGVLMPNVSFTYQGTEGE-----------VNQTINLTMGEVGLFNGITQFESPST 312

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                       +    +      +   + +   K      +A  N    L +       
Sbjct: 313 TKAIEQDGYTMGMLEGFSFDDSGQITGVFTNGNRKTLGQVALAKFNNAGGLEKAGDTL-- 370

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++  N S + ++   +      +         V+L E+ + +I  ++ +  + + I   D
Sbjct: 371 FVASNNSGAANIGTAAAEGRGSLKAGALEMSNVDLSEQFTDMIVTQRGFQSNARTITTAD 430

Query: 470 KMLQTLLEGVK 480
           +MLQ ++   +
Sbjct: 431 QMLQEVIALKR 441


>gi|126734127|ref|ZP_01749874.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2]
 gi|126716993|gb|EBA13857.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2]
          Length = 444

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/489 (10%), Positives = 128/489 (26%), Gaps = 54/489 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55
           M++ +  N +       + + A+I  NI N+    Y R  T              +    
Sbjct: 1   MTISSSLNASVAGLAANATRLATISDNISNSSTYGYKRAVTDFQSMVIESGQGTYSAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSL 111
           R+    + D+   L + S+        +    +    S      ++          R   
Sbjct: 61  RTTTSRLIDERGALVSTSNPTDLAVRGRGMLPVTSETSVTVDNGDNPLFLTTTGSFRPDA 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + Y ++    +L          +      S   +  ++ +A++      + +   ++   
Sbjct: 121 QGYLRSPGGLVLLGVPAAADGTIPNYPRDSIDGLVPVQINANQFAGEATTRVDLSVNLPA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
                                         SE + +           +  +   T+    
Sbjct: 181 TSTREGASGE--------------------SESLSVEYFDNLGASSNLSFTFTPTVPANG 220

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +    ++       +++ I       +    +    G   A +   D   P       
Sbjct: 221 ASNEWTMEIRDSESDVDADGIPDVVGEYTLTFDATRGGGGTLANVDFADPAAP------- 273

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                            G + +     ++  +     ++  G   +     Q     + +
Sbjct: 274 ----------------VGGAYDPITGALSINVDGGPMEINIGELGSSIGLTQLSDAFAPV 317

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               + +         +     +   +    N+     P+  +     L    +    + 
Sbjct: 318 SISKNGTPVGSLTSIEVDQNGFVRASFDIGINRVLYQIPLVDVPNVNGLETLDQQ--SYR 375

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S S  L          I          ++  EL+ LI+ +++Y+ + K+I   D+M
Sbjct: 376 VTPDSGSFFLWDAGDGPTGDIVGFAREESATDVAGELTELIQTQRAYSSNAKVIQTVDEM 435

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 436 LQETTNIKR 444


>gi|77464881|ref|YP_354385.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1]
 gi|126463723|ref|YP_001044837.1| hypothetical protein Rsph17029_2963 [Rhodobacter sphaeroides ATCC
           17029]
 gi|221640802|ref|YP_002527064.1| hypothetical protein RSKD131_2703 [Rhodobacter sphaeroides KD131]
 gi|332559780|ref|ZP_08414102.1| FlgE2 [Rhodobacter sphaeroides WS8N]
 gi|77389299|gb|ABA80484.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1]
 gi|126105387|gb|ABN78065.1| protein of unknown function DUF1078 domain protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221161583|gb|ACM02563.1| Hypothetical Protein RSKD131_2703 [Rhodobacter sphaeroides KD131]
 gi|332277492|gb|EGJ22807.1| FlgE2 [Rhodobacter sphaeroides WS8N]
          Length = 465

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/494 (10%), Positives = 116/494 (23%), Gaps = 43/494 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------E 48
           M++ +  N      N  + + A+I  NI N+    Y R D                    
Sbjct: 1   MTISSSLNAGVAGLNANATKLATIADNIANSGTYGYKRADADFESMVITQSANGGSYAAG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISK 106
            V   T R   +        + +SA+      +    +     + A              
Sbjct: 61  GVRANTIRRVEEW---GAPVSTASALDIAISGRGMLPVIRETSLGASSGNEALLMTRTGS 117

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                    K  +  +L          +      S  +++ +   A++      + +   
Sbjct: 118 FATDPSGVLKTDTGLVLLGWPATADGTIPTMSRDSIAQLEPVVIAANQTAADPTTRINLG 177

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           ++                     F +        +S    +                   
Sbjct: 178 VNLPAEETKYGASGRVLTVSVEYFGNLGTSETLSVSYHPTLPAAAG-------------- 223

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
             +    +      +S           +      S  G+ +    I  L  +        
Sbjct: 224 --DPPTNNWTMVIRDSANADKVIGIYTMQFSDARSGGGTILDDTAITPLNTVTLDGTTYT 281

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                       GS       A +      +    G  D    +  G   +     Q   
Sbjct: 282 VEN--------AGSTPPDSSPAYDPLTGGIVLEVAGNADNKIAMTLGKPGSANAMTQVSG 333

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + +        S         +     +   Y   F +     P+  +     L      
Sbjct: 334 DFAQTGITKDGSPVGNLTGVEIDDGGFMRATYDTGFTRVIYQVPLVDVPNYNGLTALNNQ 393

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           +        S +  L          +          ++  EL+ LI+ +++Y+ + K+I 
Sbjct: 394 TFAI--SPDSGNFYLWDAGDGPTGDVLGYAREGSTTDVATELTNLIQTQRAYSSNAKIIQ 451

Query: 467 FTDKMLQTLLEGVK 480
             D+MLQ      +
Sbjct: 452 TVDEMLQETTNLKR 465


>gi|289433983|ref|YP_003463855.1| flagellar hook-associated protein 1-related protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170227|emb|CBH26767.1| flagellar hook-associated protein 1-related protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 507

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/511 (14%), Positives = 153/511 (29%), Gaps = 36/511 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47
           M L   FN + +  + A        +NI N +   Y+R+                   + 
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQALYSDGGLLGGNKQTG 59

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V   +           +   +                 +      N  P+  +   
Sbjct: 60  YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +  + +KN  +      ++ +        N     ++++      + E  + +L   +
Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +L  +N AI    A  +  +D L+QRD +L  +S   GIS     NN  V   + G  L
Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS----------------AVPKGK 271
                         + +            +   S   S                      
Sbjct: 237 VVQGDETTEITSTRTASGFEFFVSGQTLNMPEGSISASVRVNQNEIKSYQAKIETFSNDL 296

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
            KAL  I+   V    + L ++   L  + +++  ++   E +  L    G+    + + 
Sbjct: 297 AKALDDIQVKNVNKTMDDLQKIGDELQANPNDEKLLSNREELLRQLEKFPGVTRSGDTID 356

Query: 332 QGISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
            G +           Y ++ S       V     W +            +      +   
Sbjct: 357 IGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWMINPTITNNAENKQFLGVIAADIAS 416

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                     T   +    I  +  + S S           + +SES S+  GVN+ EE+
Sbjct: 417 LKTDKNIEGTTFPNFMDGLITEVATDASKSSATSTADTQALSSLSESKSSLEGVNIDEEM 476

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +++ +  Y  + K +   + M++ LL  +
Sbjct: 477 TNIMQYQSYYVANTKAMNTVNDMMKALLAML 507


>gi|262276410|ref|ZP_06054219.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP
           101886]
 gi|262220218|gb|EEY71534.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP
           101886]
          Length = 625

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 118/346 (34%), Gaps = 17/346 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +          A +Q  +   NI N +   Y R+      +           + V   
Sbjct: 3   FDLLTLGSQGVLTAQRQLNTTGHNISNVNTDGYSRQSVEQRANDSAYWSANQWGQGVHAA 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R           +  +SA+   +   S   + + M +           +++   +++ 
Sbjct: 63  AVRRNYDKFAVNEYNITTSALAHAQTRNSQLTMLDDMMSHAAKK--IPENMNEFYGAVKG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + S+    K V++ +  V    N     +Q   A+   EI+  +  +    +E+  +
Sbjct: 121 LADSPSDMGARKVVLEKSRLVAAGLNDINNVLQSQEANTTVEIDATLKRMNDIGAEIVDI 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           + AI    A+    +D LD+   L+ ++SE   +S   R++    V    G TL   +  
Sbjct: 181 HKAILKAQAA---DNDLLDRHQKLINELSEYTQVSVNQRDDGLYNVIIGSGHTLVSGLHS 237

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                   +         + ++G  +     +A  +G++ A+ + RD+ +   +++L  +
Sbjct: 238 SELQTVPGTPDHQKRRLAL-VEGKALKP-IDNADIRGRLGAMFEFRDNTLAQARDELGRL 295

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           A     S +E      +     G  I       D    + +  +  
Sbjct: 296 AAGFAMSINELQSQGYDLGGQVGENIFVDFNSDDFARDRIVKASDS 341



 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/344 (9%), Positives = 99/344 (28%), Gaps = 5/344 (1%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
              + + R +  +       ++    S+   +   +        ++ DF   R V     
Sbjct: 282 DNTLAQARDELGRLAAGFAMSINELQSQGYDLGGQVGENIFVDFNSDDFARDRIVKASDS 341

Query: 202 SEIIGISTIV----RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV-TSESNPIFIDG 256
           +  + +        +  +  + +     TL +     +      S      +   I +D 
Sbjct: 342 TAALKVYIDDLAQLKIGDYQLKFDGSQYTLVDPEKNTVAVTPSGSPPSINYDGLRIQVDV 401

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
            +V+  +    P  +    + +          Q    ++ ++    +       ++    
Sbjct: 402 GLVAGERVIIRPVRQGAGQIHVTMEDPAKIAAQSYISSKSILTGQGDLKVTQPGAQQEFQ 461

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
           + I+           +G            +  +       ++                  
Sbjct: 462 VAISPDATQFAVLDMKGNILLAPQAYPPTAPVTVNGTTFELTDGAAPEDVFAVSLLPADG 521

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
              +      +           +L++        L   ++    L   S+V  +  +   
Sbjct: 522 ENGNLIRMQKLQTLKLMDGGRSSLIDVYEGLNTDLGVQKASFARLEDVSRVEHDAAAGRV 581

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   GVNL EE + ++K + +Y  S++++   ++  +TLL   +
Sbjct: 582 AEISGVNLDEEAANMMKFQHAYMASSRIMTAANETFETLLNATR 625


>gi|325982365|ref|YP_004294767.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. AL212]
 gi|325531884|gb|ADZ26605.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. AL212]
          Length = 638

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 125/406 (30%), Gaps = 15/406 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + +   +    A  Q  +   NI N     Y R+  +   +             V   
Sbjct: 3   NGILDIGISGLLTAQNQLLTTSHNISNVATPGYNRQQVILNTNTPQSSGAGFVGRGVHST 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +               +    Q L   F  +K++        +  +  +     +L+ 
Sbjct: 63  TVQRIYNQFLVNQSLQIQTQS--QSLDSHFAQIKQLDDMLGDTTSGLSPALQNFFSALQD 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     + +I N E +   F +  + + ++R D + ++   +  +     +L  +
Sbjct: 121 VASNPSVIPSRQAMISNGEALAARFQSMDQRMSQMREDINAQVTSIVVEVNSLAGQLAKI 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           N  I     +     A+D LDQRD L+ ++S++I   TI  +N  + ++  +G  L    
Sbjct: 181 NQQITLAEGASGGQPANDMLDQRDELINRLSKLINTDTIRESNGSVSIFVGNGQALVVGS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +    +  +  +      +  ++   +  G +  LL  R   +   QN L 
Sbjct: 241 QVLSLKAIQSPDDPSDLTLGLISRNNTIQIHED-QITGGVLGGLLSFRSETLDNAQNALG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L  SF+E+  +  +     G                    +              
Sbjct: 300 RIAITLAHSFNEQHQLGVDLNGDMGENFFTVPSPKVISALTNNPASNITASISDHGALTT 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
            D         + +  L+    +      S     + D ++     
Sbjct: 360 SDYQFSYDGTNYTLTRLSDNTSVSTLVAPSGGAPLVLDGISVTGAT 405



 Score = 90.9 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/381 (7%), Positives = 82/381 (21%), Gaps = 13/381 (3%)

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
             L     + +  I           +    +  +  +   +    +       +      
Sbjct: 255 SDLTLGLISRNNTIQIHEDQITGGVLGGLLSFRSETLDNAQNALGRIAITLAHSFNEQHQ 314

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
               +N  +     +           +     I+  I     +  ++    Y     TL 
Sbjct: 315 LGVDLNGDMGENFFTVPSPKVISALTNNPASNITASISDHGALTTSDYQFSYDGTNYTLT 374

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                      +                            +  +     I  ++    + 
Sbjct: 375 RLSDNTSVSTLVAPSGGAPLVLDGISVTGATILTNERFRIQPTVNGAKDIAVNIADTTKI 434

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVP-------------GLFIADGIKDLDNKLCQGIS 335
                 R      +            P                     +     +  G+ 
Sbjct: 435 AAAAPNRTNAAVTNTGTGKISAGTVNPLPLDPNLQQPLTITFHAPYDGQYDVTGIGAGLP 494

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            T     +                    ++  +    +      ++     +       N
Sbjct: 495 ATNQAYTEGADISFNGYTFQISGNPAAGDIFTITPNLNGSADNRNALLLGALQTKNTVEN 554

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              +        +  +     +              I  +  +T GVNL EE + L++ +
Sbjct: 555 GTASYQSAYGQLVSQIGNKTRELEVTSKSQANFLAQIENTIQSTSGVNLDEEAANLMRFQ 614

Query: 456 QSYNISNKLIMFTDKMLQTLL 476
           Q+Y  ++K+I  ++ +  ++L
Sbjct: 615 QAYQAASKIIEMSNTLFDSIL 635


>gi|160901877|ref|YP_001567458.1| flagellar hook-associated protein FlgK [Petrotoga mobilis SJ95]
 gi|160359521|gb|ABX31135.1| flagellar hook-associated protein FlgK [Petrotoga mobilis SJ95]
          Length = 818

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 141/413 (34%), Gaps = 29/413 (7%)

Query: 16  NASQQFASIVRNIENADNKNYVRRDTMTTIS-----------------PENVTVVTQRSE 58
                 + +  NI N++ + + R+  +   +                     TV   +  
Sbjct: 19  TNKIAMSVVAHNISNSNTQGFSRQSPVIVTTNPINLTTIGSGGAALSFGTGSTVSDIQRV 78

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                D      SS +     + S     E +   +       +       S+E    + 
Sbjct: 79  RDEFLDLQFRETSSRLNYWENIYSNVHYIEQLFG-EPGETGLRNMYDSYWASIEELKTDP 137

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S +     V+  AEE+V         +++++ D + EI+L I  +  +L  +  +N  I 
Sbjct: 138 SNEAAKTQVVSRAEELVNTMKDLNYRLEELKNDINSEIKLRIDEINGYLKRIADLNQKIL 197

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             ++     +D LD+RD LL K+SE+  I     +N  + +   D   L  +  ++I   
Sbjct: 198 TSSSMSGSPNDLLDERDRLLDKLSELSNIRITSHSNGQISLSMGDKVVLNGSSYQEI--- 254

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
           +  +   T+++   ++   +++ N       GK+ AL ++RD ++P +Q QLDE    L+
Sbjct: 255 RSLTIAETNDAYYAYVGSNLLTFN------DGKMSALFELRDEIIPSYQQQLDEFGLYLV 308

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            + +       +S                          I  N       +      +  
Sbjct: 309 DTTNLIYKEGWDSTGTITGANFFADISTKRGFEDSRFFRIAGNSDVFHPDTI--KHVTSL 366

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
             F  +        DL +    + + +   D  +    +     Y  ++ G+ 
Sbjct: 367 SSFYSDPSIDLNNFDLYSVDYSATSPSPYDDSNSIKYDSTNNAIYFDDTSGFQ 419



 Score = 91.2 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 89/238 (37%), Gaps = 8/238 (3%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +Y +  + N          +  GS V +        +++  +   +   + +  +   
Sbjct: 584 DTAYDLVDKINATNTGVTASVTPHGSFVLRAGNLIDFDLKNVTIKGPEKLFNALGFIEDD 643

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S +    I+ +               L      GI   I V+   + NPS L     +  
Sbjct: 644 SNNIVTLISPDISPEQIDEKFSEADLLKIDNELGIVNQISVSSNLKENPSLLAT--DLGY 701

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             +      AG   + +     ++ + + +        V    +  N +  +      + 
Sbjct: 702 YDINYSPTGAGNVSVWDEISKMYDNSVLDN------GRVGFSNFLGNIVTDIGVKGETAD 755

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            + + S+++ + IS      +GV++ EE++ L+K +Q++N S ++I   ++M++T++ 
Sbjct: 756 KMRLNSEMLNSEISLEKERVMGVSIDEEMTNLVKYQQAFNASARVITAVNQMMETVIN 813


>gi|121596124|ref|YP_988020.1| flagellar hook-associated protein FlgK [Acidovorax sp. JS42]
 gi|120608204|gb|ABM43944.1| flagellar hook-associated protein FlgK [Acidovorax sp. JS42]
          Length = 691

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/472 (11%), Positives = 132/472 (27%), Gaps = 36/472 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MSL    N              +   NI N     Y R++                   V
Sbjct: 1   MSL---LNVGARALLANQVALQTTGHNIANVSTAGYSRQNVGMETVQGQFTGSGYIGNGV 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T    +  +  +   A  +      +        + +       +     I+ + +S
Sbjct: 58  QVATILRNHNELLTRQAAAAQAVQAGDTVRAERLGQLQDVFQ--GGTSGLGAAITDMLNS 115

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L     + ++       +   +E+     +SA ++ +I    +++++ + + +      +
Sbjct: 116 LADVVASPTDITARTVTLTRMDEMAARMRSSAEQLHEIAYSVNEQLQNDATRINSLAKSI 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             VN+ I     +    +D LD+RD L++++++ I  + I  ++  + V+      L   
Sbjct: 176 ADVNEQIARVKGNGQSPNDLLDKRDQLIRELNQFIQTTQIPADDGTVGVFIGGSQALVLG 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                     +     S+   +F    G          +  G++  LL+  +  +   +N
Sbjct: 236 DKASEVLIAESQQFPGSQLTQLFFKPAGGAPVELNEGMLGGGEVAGLLRFANQDLAEGRN 295

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  MA  +  + + +  +    +   G  +                  I       ++ 
Sbjct: 296 LLGRMALAIGRTMNYQQGMGLTLDGQAGKPLFSEPDKAPGYTSGTAQGFIDFQTPLGTSE 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAG------------YPDLINHYCDSFNKNFIFDPVAGINT 396
               D              + G              +L+       +        AG   
Sbjct: 356 FAASDYEVRFTGGPTPTGEVPGQIIRLSDGKTINVANLMASAGTQMDGLTFKFSTAGAVN 415

Query: 397 NVTLLEYARNSIGWLEK-------NRSDSHDLHMKSQVVFNHISESYSNTVG 441
              L +   ++   ++            +             +  +  +  G
Sbjct: 416 ERVLFKPFASAAANIQALVYSPRDLAVANPINAAMGTSNAGTLQLAQLSATG 467



 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/417 (8%), Positives = 94/417 (22%), Gaps = 6/417 (1%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +L   +  + + R L    AL    + +       T      +       K      
Sbjct: 279 VAGLLRFANQDLAEGRNLLGRMALAIGRTMNYQQGMGLTLDGQAGKPLFSEPDKAPGYTS 338

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                  + +  +     +A + +                + R  S+   +N A    +A
Sbjct: 339 GTAQGFIDFQTPLGTSEFAASDYEVRFTGGPTPTGEVPGQIIRL-SDGKTINVANLMASA 397

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                                +         N   +VY+     +   +   +      +
Sbjct: 398 GTQMDGLTFKFSTAGAVNERVLFKPFASAAANIQALVYSPRDLAVANPINAAMGTSNAGT 457

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +   S           +             +  +     P            L     
Sbjct: 458 LQLAQLSATGLHWKDPKYTKTNPPAETVANGLVGDVLRIPPPPEPQVPPIPQITLTYREK 517

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E               +                 +         + +            +
Sbjct: 518 E-SARGFFVSGTDEPPLNIDPPGSYTPGTVIPYVSGKPIQINGWSITLQGTPKDGDTVTV 576

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            + K    +         +            +    +L +     +  +      +    
Sbjct: 577 GDAKLSGDWYTRNAGNASALMALRDVK----MFDESSLADGYAGLMAQVGTRTQSAQYAA 632

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             S  + +++  S +   GVNL EE + LI+ +Q+Y  S K++     +   L++ +
Sbjct: 633 KLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQASAKMLQIAQNIFDNLIQTM 689


>gi|89902483|ref|YP_524954.1| flagellar hook-associated protein [Rhodoferax ferrireducens T118]
 gi|89347220|gb|ABD71423.1| Flagellar hook-associated protein [Rhodoferax ferrireducens T118]
          Length = 644

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/414 (11%), Positives = 133/414 (32%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + +              +   NI N +   Y R+  +   S           + V +
Sbjct: 1   MSGLLSVGTRALQANQVMLQTAGNNIANVNTPGYSRQSAVLQTSTGQFTGGGYIGKGVDI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T +        +     S+               E +             I+ + ++  
Sbjct: 61  QTIQRNFSAFLTRQSALASATGAADSSRADKLKQLEGIF--PGGTAGLGAAINDMLNAFS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +   ++       +   +E  +   T+++ +  +++   +E+  ++SN+      +  
Sbjct: 119 DVANAPTDLTARTVALTRVDEAAKRMRTASQNLDDLQSGVAQELSQKVSNINSLAKSIAD 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +ND I     S    +D LDQRD L++ +++ +  S+I  ++  + ++ +    L     
Sbjct: 179 INDKIARTQGSGQPPNDLLDQRDQLVRDLNQYVQTSSITASDGTVGIFLAGSQALVLGST 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + +    +S      G    +   +A+  G++  LL+ +++ +   +N L  
Sbjct: 239 VSPVSIVKDDFGDPLKSKLAISRGGQAITLDENALGGGEVAGLLRFQNNDLVEGRNLLGR 298

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +   +  S + +  +  + +   G  +      +                   ++P+   
Sbjct: 299 LTLAIGTSMNNQHQLGLDLDGNAGGNLF--TPTVFGAGNILKPSAPATLNTGTASPALTI 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
              +      + +   +     I    D     F   P+     N+++   + N
Sbjct: 357 SDVTQFVASDYEMNFTSATSGNITRRSDGVVTAFTSVPITIDGLNLSIPSGSAN 410



 Score = 86.6 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/441 (12%), Positives = 111/441 (25%), Gaps = 15/441 (3%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI-SKLRDSLES 113
            R  N+ +    + A    +G          L   +S      +     + SKL  S   
Sbjct: 204 VRDLNQYVQTSSITASDGTVGIFLAGSQALVLGSTVSPVSIVKDDFGDPLKSKLAISRGG 263

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +  L E+ LG   +        N     R +      A          L   L      
Sbjct: 264 QAITLDENALGGGEVAGLLRFQNNDLVEGRNLLGRLTLAIGTSMNNQHQLGLDLDGNAGG 323

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N        + +                  +          +D  +  +  T+   T   
Sbjct: 324 NLFTPTVFGAGNILKPSAPATLNTGTASPALTISDVTQFVASDYEMNFTSATSGNITRRS 383

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           D       S  +T +   + I     +      +      A     +   P        +
Sbjct: 384 DGVVTAFTSVPITIDGLNLSIPSGSANPGDRFLLKPFSTAASNINAEFSAPRALAVASPV 443

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  L    +    ++        +     +           S+ I  N    +  S    
Sbjct: 444 AGSLGTGNTGSMQLSSLLARSNPVASTPVVLTFTGANSYTRSDEIPANATTFTYTSGQVI 503

Query: 354 GGSVSKKF--------------LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            G+                     +   +   P    +                +     
Sbjct: 504 EGTTPATNPLSQWSLTLQGVPKAGDTFTVQQQPAAFRNLNAGNASAMTGLRDVAMFDGSA 563

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +   + I  +      ++     S  +  ++    +   GVNL EE + L++ +Q+Y 
Sbjct: 564 LSDGYASLISQIGIRTQSANYSAQVSSSIAANLERDRTGVSGVNLDEEAAKLLQYQQAYQ 623

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            S K++     +  TL++ ++
Sbjct: 624 ASAKMMQIAQGIFDTLIQTLR 644


>gi|149203100|ref|ZP_01880071.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035]
 gi|149143646|gb|EDM31682.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035]
          Length = 433

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/489 (9%), Positives = 126/489 (25%), Gaps = 65/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M++ +  N +    N  + + A+I  NI N+    Y R +             +      
Sbjct: 1   MTISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESVVIAGRGGSYAAGGV 60

Query: 56  RSENKNMFDK--VLHAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSL 111
           R+  + + D+   + + S+        + F   A    +   +             R   
Sbjct: 61  RAGTQRLIDQGGAIVSSSNPTDLAVRDRGFLPVARVTDLVVGNGDPRMLLTTTGSFRADP 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +      S  +L     +    + +    ++  ++ ++ + ++      + +        
Sbjct: 121 QGRLVTESGLVLLGWPANPDGTIPEFSRDTSTGLEPVQINVNQLTGEPTTAIN----LGV 176

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +        +        ++  D L    +  I  +  +                    
Sbjct: 177 NLPATDTRFDSLGDPRQLSIEYFDNLGTSETISIQFTPTIPA------------------ 218

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                     + T+T  +    + G  V +   +    G +  +  +           + 
Sbjct: 219 ---TGLSNEWTVTLTDSAQGNALIGEYVLTFDDARETGGTLLNVQSVTGGTYDPTSGAII 275

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                     +   P      +      A      D                        
Sbjct: 276 VDVAGGPIEINIGRPGTSAGMSQLSDSFAPHSIAKDGSPV-------------------- 315

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                          N+     +   +    ++     P+  +     ++   +    +L
Sbjct: 316 ---------GNMTSANVDANGFVRATFDTGVSRIVYQVPLVDLPNPNGMVSMDQQ--TYL 364

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S S  L          I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 365 PSTDSGSFFLWDAGAGPTGDIVAFARQESATDVAGELTDMIQTQRAYSSNAKVIQTVDEM 424

Query: 472 LQTLLEGVK 480
           LQ     ++
Sbjct: 425 LQETTNIIR 433


>gi|51598543|ref|YP_072731.1| flagellar hook protein FlgE [Borrelia garinii PBi]
 gi|51573114|gb|AAU07139.1| flagellar hook protein [Borrelia garinii PBi]
          Length = 442

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/490 (10%), Positives = 121/490 (24%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  +T++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVIHTASDIEDLIIPIGDKEGAKSTKNI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++++ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPIIEEGASSADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    + P+ I+G   S+       +G + +L            N 
Sbjct: 219 ------LTVVKDLNTPNLWNAPVLINGEQNSNFTIGFDNEGALASL------------NG 260

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  ++      + +  N   V      +                     Q+  + S
Sbjct: 261 QPGQKEDILQIPITFNVVGANVGEVGEQQTVNLKLGTVGSYT-------DSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|317133463|ref|YP_004092777.1| flagellar hook-associated protein FlgK [Ethanoligenens harbinense
           YUAN-3]
 gi|315471442|gb|ADU28046.1| flagellar hook-associated protein FlgK [Ethanoligenens harbinense
           YUAN-3]
          Length = 548

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/544 (13%), Positives = 152/544 (27%), Gaps = 67/544 (12%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           SL    N A +  + +         NI NA    Y R+                      
Sbjct: 3   SLNTGLNTALSGLSASQTALGVTAHNISNAATDGYSRQMVDLQAVNVNTGAYQWKPVVPF 62

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-----SP 100
               V             D      ++        Q+     E +  +   +        
Sbjct: 63  VGNGVNSNQITQARDGFLDVRYRTANAQYSDYEQRQNDLGQVEDIFNEVSTSGNDTLQGL 122

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           +  ++ L + + SY  + +   L  T+  +AE +V    T+   +    +     + + +
Sbjct: 123 SGQLNTLINDIGSYQSSPASSSLPVTIKTDAENLVTKIRTAYSSLTTFESQEQSALNVVV 182

Query: 161 SN------LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           S       +   L  ++ +N  I         A+D  DQR+ LL K+S  + IS   +++
Sbjct: 183 SGDTQSGGINGILQNISTLNTQIVSMEVGGQPANDLRDQRNQLLDKLSGYLDISATEQSD 242

Query: 215 NDMVVYTSDGTTL-----------------------FETVPRDINFEKMNSYTVTSESNP 251
             + V   +                            +           ++    ++S  
Sbjct: 243 GSVTVQMENDLASGSGAMLVDGNNIVHTLKVVTDGPTDASGLSTTAVTWDASDSNNQSTT 302

Query: 252 IFIDGVVVSSNQGSAVPKGKIKA-----------LLQIRDSVVPIFQNQLDEMARVLIGS 300
              +     S    +V  G +                  D  V   +  L++ A+     
Sbjct: 303 YATNTGTGWSGNTLSVGGGSVNGYLAILNGDGSGTGSYGDVGVHYLKEHLNDFAQSFADI 362

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +     +G    +                      T           + +    + +K 
Sbjct: 363 MNSTSTSSGGGAQMLTYGSGTPPTPTYPDTTGWSDPTASAAYVATDAAATISLSDAWNKD 422

Query: 361 FLWNVKNLAGYP------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                 N  G          +N    +   ++       + T+ T+  YA      +   
Sbjct: 423 DTLFGDNYTGTSVGTYAQAFLNALGSAQVSSYDTSAHKTLYTDGTMASYAATFSNKIANV 482

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            +D   +    Q+  N +     +   V++ EE   L+K +Q Y  S ++I   + M+ T
Sbjct: 483 INDDTTMAGNYQIQKNDLDTQRQSVSSVSIDEETVNLMKFQQMYGASARVITTINDMMGT 542

Query: 475 LLEG 478
           LL  
Sbjct: 543 LLSM 546


>gi|116694225|ref|YP_728436.1| flagellar hook-associated protein FlgK [Ralstonia eutropha H16]
 gi|113528724|emb|CAJ95071.1| flagellar hook-associated protein 1 [Ralstonia eutropha H16]
          Length = 639

 Score =  142 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/438 (10%), Positives = 139/438 (31%), Gaps = 22/438 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
           ++F+   +  N A     +   N  N+  + Y R++T+   +                 T
Sbjct: 2   SLFSIGLSGLNTAQNALTTTGHNFANSATEGYSRQNTIVASAGGQYTSQGFYGFGSNTTT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       L   +SA           A  + + AD          + K   ++++ 
Sbjct: 62  VIRVYDEFLTGQLRGATSASASLAAYSDQIAQIDNLLADQ--KGGLAPLMQKFFAAVQAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++    + ++   + +V    +++   +++++  ++++   ++ +  +  ++  +N
Sbjct: 120 ADTPADPAARQGMLSAGQALVGQVRSASNYFKQLQSGVNEQVGTAVTQVNAYTRQIANLN 179

Query: 175 DAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             I      +     +D LDQRD  + +++ ++G   +V+++    V+  +G  L     
Sbjct: 180 QEITRLKAASGGQPPNDLLDQRDQAVAELTRLVGAKVVVQDSGTYNVFVGNGQPLVMGND 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   ++           +    V  ++  A+  G +  LLQ R   +   QN +  
Sbjct: 240 AYELKAVASAADPNRTVVAYTLPNGNVFESEPGAITGGSLGGLLQFRTESLDAAQNAIGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           ++  +  SF+ +  +  +     G  + +              +T     +  +  +   
Sbjct: 300 LSLAIGQSFNAQHKLGIDLNGAIGTDMFELGSATSIPNANNTVKTTVATTRIDNASALTT 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
               +                L     +      +    A      +   +       + 
Sbjct: 360 SDYKLQFDGT--------NYTLTRLSDNQQVVTPVPAGGASYPLQFSADGFTVEINAAMG 411

Query: 413 KNRSDSHDLHMKSQVVFN 430
            N S +      +   F+
Sbjct: 412 TNDSFTIQPTRNAATGFD 429



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 87/330 (26%), Gaps = 7/330 (2%)

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           D +  I  ++  L    S     N        ++ D    L   D  LQ       ++ +
Sbjct: 317 DLNGAIGTDMFELGSATSIPNANNTVKTTVATTRIDNASALTTSDYKLQFDGTNYTLTRL 376

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             N   +    + G +       D    ++N+   T++S  I       +    +     
Sbjct: 377 SDNQQVVTPVPAGGASYPLQFSADGFTVEINAAMGTNDSFTIQPTRNAATGFDMAISDPA 436

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           +I A    R       +         +   +S          +      +D    L  + 
Sbjct: 437 RIAAASPARADAAASNKGNGTVSLGKVAPGYSLLAGTITARFDGTTYVFSDANGPLATQP 496

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               + +           SF     +     L +          +       N       
Sbjct: 497 APVSNGSNTDYTLNGLTFSFGGTPATGDTFTLSSNAGAVKDNGNMLALAKLQN------- 549

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
              I    +  E     +  +                +   I  +  +  GVN+ EE   
Sbjct: 550 AKTIGGVSSFSEGYAQLVNDVGTRAKSVKIASASQDSITTQIKTAQQSVSGVNMDEETVS 609

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +++ +Q Y  + ++I     +  T++   +
Sbjct: 610 MLRFQQLYQANARVIQTAGTLFDTIIGIGR 639


>gi|288940409|ref|YP_003442649.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180]
 gi|288895781|gb|ADC61617.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180]
          Length = 436

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/484 (10%), Positives = 113/484 (23%), Gaps = 61/484 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-------TVVTQR-- 56
            F+   +    A++       N+ N+    + +          +        + V  R  
Sbjct: 2   SFSIGLSGLQAAAKDLEVTGNNVANSGTIGFKKSRAEFADIYASSFYTCVNKSAVGVRLD 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +  +      +    + +      + F     +++++   +          +   + Y  
Sbjct: 62  AVTQQFSQGNVELTDNTLDLAINGEGFF----VLNSEAGQDGKVYTRNGAFQVDRDGYVV 117

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L           V  F+T                                    
Sbjct: 118 NSSGQRLQAYPPTTPNSAVSAFDT------------------------------------ 141

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                       D     D +  K +  + +   + ++  ++  T+     F        
Sbjct: 142 --------GKLEDIQLPLDNMAPKATTEVELQVNLNSDETVITGTTPPGPAFAFPTAPAT 193

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                SY  ++        G                 A+         + Q+        
Sbjct: 194 DVDPTSYNWSTTYQVYDSLGKPRDVTMYFVKTAPDNWAVHVGMRDSAGVMQDVGGGTNTA 253

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP--SFLRDG 354
           +  +    D        +            DN            N     N   +     
Sbjct: 254 IFTAAGVFDTATSTPNPIAVSVGPFLTPPDDNGAGALAFSIDMSNSTQYHNSRNNLNDVT 313

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                    +  ++     + + Y +  +       +A       L +   N   W E  
Sbjct: 314 QDGYTSGTLSGFDVDADGAIFSRYSNGKSYVLGQVAMANFKNPQGLQQLGDN--NWGESY 371

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S               I         V+L +EL  +I  +++Y  + K I  +D+M QT
Sbjct: 372 NSGEPIYAAAGDGRLGSIQSCALENSNVDLSQELVNMITAQRNYEANAKTISTSDQMTQT 431

Query: 475 LLEG 478
           +L  
Sbjct: 432 ILNI 435


>gi|254488501|ref|ZP_05101706.1| flagellar hook protein FlgE [Roseobacter sp. GAI101]
 gi|214045370|gb|EEB86008.1| flagellar hook protein FlgE [Roseobacter sp. GAI101]
          Length = 432

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/489 (11%), Positives = 129/489 (26%), Gaps = 66/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M++ +  N         + + AS+  NI N+    Y R  T       +    + T    
Sbjct: 1   MTISSSLNAGVAGLQANATRLASVSDNIANSSTYGYKRVVTDFNSLVLSEGSSSYTAGGV 60

Query: 56  RSENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEM--MSADDHYNNSPTHYISKLRDSL 111
           R+ ++ +   D  L + +++       + F  +      +A+              R   
Sbjct: 61  RASSQRLLGEDGALVSTTNSTDLAVRGRGFLPVTTATEFNANSETPEMMLTTTGSFRLDA 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E + K  S  +L     +    +      +   ++ ++   +   +              
Sbjct: 121 EGFLKTESGLLLMGWPANADGSIPIYPRDTDDGLRPVQFALNLNGDPTTRVDMSL----- 175

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +         S       ++  D L    S  +  +                      V
Sbjct: 176 NLPATATAAGGSGEPQILSIEYFDNLGTSKSISMEFT--------------------PNV 215

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P      + N   + S    + + G        S    G I ++  I  +        L 
Sbjct: 216 PATGTTNEWNVKLMDSAQGGLLV-GEYTILFDDSRASGGTIASVTTITGNAYDPVTGDLI 274

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                                           +    +   G   +     Q   + + +
Sbjct: 275 V-----------------------------DAQSGPIEFNIGAIGSSFGLSQLSDSFAPI 305

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 S         +     +   Y +         P+  +     ++        +L
Sbjct: 306 ALTKDGSPIGNMAGVEVDENGYVNAIYDNGLRNTIYQIPLIDMPNPEGMVSLDAQ--TYL 363

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +S ++ L    +     I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 364 PSTKSGAYFLWDSGEGPTGDIKSYSREESTTDVATELTTMIRTQRAYSSNAKVIQTVDEM 423

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 424 LQETTNIKR 432


>gi|188592123|ref|YP_001796721.1| flagellar hook-associated protein flgk [Cupriavidus taiwanensis LMG
           19424]
 gi|170938497|emb|CAP63484.1| FlgK: Flagellar hook-associated protein 1 [Cupriavidus taiwanensis
           LMG 19424]
          Length = 639

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/438 (10%), Positives = 138/438 (31%), Gaps = 22/438 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
           ++F+   +  N A     +   N  N+  + Y R++T+   +                 T
Sbjct: 2   SLFSIGLSGLNTAQNALTTTGHNFANSATEGYSRQNTIVASAGGQYTSQGFYGFGSNTTT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       L   +SA     +     +  + + AD          + K   ++++ 
Sbjct: 62  VIRVYDEFLTGQLRGATSASASLAMYSDQISQIDNLLADQ--KGGLAPLMQKFFAAVQAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++    + ++   + +V    +++   ++++A  ++++   ++ +  +  ++  +N
Sbjct: 120 ADTPADPAARQGMLSAGQALVGQVRSASNYFKQLQAGVNEQVGTAVTQVNAYTKQIANLN 179

Query: 175 DAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             I      +     +D LDQRD  + ++++++G   +V+++    V+  +G  L     
Sbjct: 180 QEITRLKAASGGQPPNDLLDQRDQAVAELTKLVGAKVVVQDSGTYNVFVGNGQPLVMGND 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +            +    V  ++  A+  G +  LLQ R   +   Q+ +  
Sbjct: 240 AYELKAVASVADPNRTVVAYTLPTGTVIESEPGALTGGSLGGLLQFRTETLDPAQSAIGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           ++  +  SF+ +  +  +     G  +                +T        +  +   
Sbjct: 300 LSLAIGASFNAQHQLGIDLNGAAGTDMFKLGGATTLPNANNTVKTTVATATIDNASALTT 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
               +                L     +      +    A      +   +       + 
Sbjct: 360 SDYKLHFDGT--------NYTLTRLSDNQQVVTPVPAGGATYPLQFSADGFTVEINAAMG 411

Query: 413 KNRSDSHDLHMKSQVVFN 430
            N S +      +   F+
Sbjct: 412 TNDSFTVQPTRNAATGFD 429



 Score = 93.9 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 83/334 (24%), Gaps = 7/334 (2%)

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
           ++  D +     ++  L    +     N        +  D    L   D  L        
Sbjct: 313 QLGIDLNGAAGTDMFKLGGATTLPNANNTVKTTVATATIDNASALTTSDYKLHFDGTNYT 372

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
           ++ +  N   +    + G T       D    ++N+   T++S  +       +    + 
Sbjct: 373 LTRLSDNQQVVTPVPAGGATYPLQFSADGFTVEINAAMGTNDSFTVQPTRNAATGFDMAI 432

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
               KI A         P + +           S S+  P                    
Sbjct: 433 NDPAKIAAAS-------PAYIDATAGNKGNATASLSKVAPGFTLPAGKITAEFDGTNYIF 485

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                    + + V     ++ +      S             G          +     
Sbjct: 486 KVGGVAMAPQPVGVPNGSNTDFTLNGLTFSFGGTPAAGDSFTLGSNAGAVKDNGNMLVLA 545

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                  I    +  E     +  +                +   I  +  +  GVN+ E
Sbjct: 546 KLQNAKTIGGVSSFSEAYAQLVNDVGTRAKSVKIASASQDSITTQIKTAQQSVSGVNMDE 605

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E   +++ +Q Y  + ++I     +  T++   +
Sbjct: 606 ETVSMLRFQQLYQANARVIQTAGTLFDTIIGIGR 639


>gi|121607555|ref|YP_995362.1| flagellar hook-associated protein FlgK [Verminephrobacter eiseniae
           EF01-2]
 gi|121552195|gb|ABM56344.1| flagellar hook-associated protein FlgK [Verminephrobacter eiseniae
           EF01-2]
          Length = 658

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/454 (12%), Positives = 132/454 (29%), Gaps = 19/454 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N +            +   NI N +   Y R+                  + V V  
Sbjct: 2   GLLNVSTRALLADQVVLQTTGHNIANVNTPGYSRQSVALQTVPGQFTGNGYIGQGVDVAG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +  +   A  +A     +        + +      +      I+ + ++    
Sbjct: 62  IVRSQSELLTRQSAAAGAAQSADAVRAERLGQLQDVF--SGGSAGLGAAINDMLNAFADV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               ++      V+   +E      T+A  + +I+A A  +++  +  +     ++  VN
Sbjct: 120 LGAPTDITARTVVLTRIDETAARMRTAAGRMDEIQAAASAQLQSSVGVVNDLAMQMAAVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           + I     +    +D LD+RD +++ I++ +  + I  ++  + ++ +    L       
Sbjct: 180 EQITRAKGNGQTPNDLLDRRDQIIRDINQQLQTTQIPADDGSVGLFVAGSQPLVLGNTAT 239

Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  S    S    +F +  G        S +  G I  LL+  +  +   +N L  
Sbjct: 240 SLSIAEASAFPGSGQARLFFNRPGAKPVEMDDSLLGGGAIPGLLRFDNHDLSEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPS 349
           MA  L  + +++       +  PG  +      +          T+  +       S+  
Sbjct: 300 MAMGLGLALNQQQNQGLTLDGQPGKNLFGLPASMPGHTSGAGVGTVTFSDPTRFAASDYE 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                GS  +    +      + D       + +         G      L +    +  
Sbjct: 360 IRFATGSAGQVVRLSDGQATPFTDPAQLAAQAIDGLRFDLTRPGAPGQSMLFKPFGTAAS 419

Query: 410 WLEKNRSDSHDLHMKS--QVVFNHISESYSNTVG 441
            L+       DL   +         +       G
Sbjct: 420 NLQALVHAPRDLAAANPVMAAMGSANGGTLQLAG 453



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 4/225 (1%)

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG---NSENVP 315
            ++N   A         LQ+         +    +        +      G     +  P
Sbjct: 432 AAANPVMAAMGSANGGTLQLAGLKATGLPHPPGLVLPANANPAATPPIAGGVQLQFDAGP 491

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
            +      +          ++          +   +R  G+ +      + N        
Sbjct: 492 PMRYDVLDRRTTPPTTVATAQPYVSGAPIAIDGWEIRLQGAPNTGDTVLIGNALDPQYGD 551

Query: 376 NHYCDSFNKNFIFDP-VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
               D+ N + + D     +    TL +    +I  +      +      S+ +  ++  
Sbjct: 552 RFSRDTGNASALMDLRDLKMFDESTLSDGYAQAIAQVGTRTQSAKFAADLSRTIAANLER 611

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   GVNL EE + LI+ +Q++  S+K++     +   LL+G+
Sbjct: 612 DRTAISGVNLDEEAARLIQYQQAFQASSKVMQVAQNIFDALLQGL 656


>gi|313497761|gb|ADR59127.1| FlgE [Pseudomonas putida BIRD-1]
          Length = 440

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/485 (11%), Positives = 123/485 (25%), Gaps = 59/485 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55
            FN   +    A++       NI N     +                 T + + V     
Sbjct: 2   SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61

Query: 56  R--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +  + ++      ++A   A+        F AL +         +               
Sbjct: 62  KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDN-------GSKIYTRAGAFYSDKAG 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y  N S   L    +    +++Q   T                +L+I          +++
Sbjct: 115 YVVNASGANLQGYAVGEDGKIIQGILT----------------DLQIDTSNLTPKPTSLI 158

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            + I   +A+   +    D  +      +    +     N + M  Y             
Sbjct: 159 TEKINLNSAATSPSVTPFDPTNASSYNFTFNTPVYDSQGNEHQMNQYFIKDDATNTWSMH 218

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                +  +   ++      +      +    A+  G +   L I +  +          
Sbjct: 219 TTIDGRNPANPASTTPLVNAVPFKSDGTLDKDAMTAGDVAGGLSIGEDKIFQL------- 271

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                           +          +   +       G+   +    QY ++ + +  
Sbjct: 272 ---------------NDWIPAQKNAAGEWSANGAIANADGVKLDMLGATQYNASSAEIAK 316

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  ++     L   + +  +K      +A       L         W E 
Sbjct: 317 TQDGFATGELSGLSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGG--TNWKES 374

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S    +          IS        V+L  EL  LIK + +Y  + K I     ++Q
Sbjct: 375 YASGVPVIGAPDTGTLGQISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434

Query: 474 TLLEG 478
           T+++ 
Sbjct: 435 TIIQM 439


>gi|110677963|ref|YP_680970.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans
           OCh 114]
 gi|109454079|gb|ABG30284.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans
           OCh 114]
          Length = 436

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/489 (12%), Positives = 126/489 (25%), Gaps = 62/489 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-----Q 55
           MS+ +  N         SQ+ ASI  NI N+    Y R  T       +           
Sbjct: 1   MSISSSLNAGVAGLQTNSQRLASISDNIANSSTFGYKRVQTDFESMVLSSGGGAYAAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSL 111
           R+  + + D+   L + S++            + +         ++          R   
Sbjct: 61  RANTQRLIDERGTLVSTSNSTDLAVRGGGMLPVAQAAQVQTAGTDAPMFLTTTGSFRPDA 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + Y  + S  +L          +      +A  ++ IR    +             S   
Sbjct: 121 DGYLTSQSGLVLMGWPAAADGSIPVYPRDTADGLEPIRIATGQLAG------NPTTSMSL 174

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N       A      + +          S+ + I+            T          
Sbjct: 175 GINLPATETEADSAGLVEQISVEYFDNLGTSQSVSITFTPDVPAPGNPAT---------- 224

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                 E  +S           ++     +  G+      I A     D+          
Sbjct: 225 -NTWTMEMFDSVNPAVSIGSYTLEFNDSRTGGGTLFDVTPIGASPAYSDTT--------- 274

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                                      I   +     ++  G         Q   + + +
Sbjct: 275 -------------------------GLITINVAAGPIEVDIGALGDTEGLSQLSYSFAPI 309

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 S    +   ++     +   +     +     P+  +     L  +  +S  +L
Sbjct: 310 SVTKDGSAIGNFVGVDVDPNGFVRASFDTGEIRTIYQIPLINVPNPNGLQAF--DSQTYL 367

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +S +  L          I          ++  EL+ +IK +++Y+ + K+I   D+M
Sbjct: 368 PSRQSGAFFLWNAGDGPTGDIVSFAREESTTDVAGELTDMIKTQRAYSSNAKVIQTVDEM 427

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 428 LQETTNIKR 436


>gi|26991077|ref|NP_746502.1| flagellar hook protein FlgE [Pseudomonas putida KT2440]
 gi|24986112|gb|AAN69966.1|AE016635_2 flagellar hook protein FlgE [Pseudomonas putida KT2440]
          Length = 440

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/485 (11%), Positives = 123/485 (25%), Gaps = 59/485 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55
            FN   +    A++       NI N     +                 T + + V     
Sbjct: 2   SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61

Query: 56  R--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +  + ++      ++A   A+        F AL +         +               
Sbjct: 62  KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDN-------GSKIYTRAGAFYSDKAG 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y  N S   L    +    +++Q   T                +L+I          +++
Sbjct: 115 YVVNASGANLQGYAVGEDGKIIQGILT----------------DLQIDTSNLTPKPTSLI 158

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            + I   +A+   +    D  +      +    +     N + M  Y             
Sbjct: 159 TEKINLNSAATSPSVTPFDPTNASSYNFTFNTPVFDSQGNEHQMNQYFIKDDATNTWSMH 218

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                +  +   ++      +      +    A+  G +   L I +  +          
Sbjct: 219 TTIDGRNPANPASTTPLVNAVPFKSDGTLDKDAMTAGDVAGGLSIGEDKIFQL------- 271

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                           +          +   +       G+   +    QY ++ + +  
Sbjct: 272 ---------------NDWIPAQKNAAGEWSANGAIANADGVKLDMLGATQYNASSAEIAK 316

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  ++     L   + +  +K      +A       L         W E 
Sbjct: 317 TQDGFATGELSGLSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGG--TNWKES 374

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S    +          IS        V+L  EL  LIK + +Y  + K I     ++Q
Sbjct: 375 YASGVPVIGAPDTGTLGQISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434

Query: 474 TLLEG 478
           T+++ 
Sbjct: 435 TIIQM 439


>gi|83859391|ref|ZP_00952912.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852838|gb|EAP90691.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633]
          Length = 465

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/489 (12%), Positives = 133/489 (27%), Gaps = 33/489 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+ +      +     S   A+I  NI N +   Y R DT+ T + +       R  + 
Sbjct: 1   MSINSAMAAGASGLIANSSALAAISDNIANVNTVGYKRVDTIFTPNYKIGGGGETRYASS 60

Query: 61  NMFDKVLHAHSSA---------IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            +        +S+                  F  ++   +A    +          +   
Sbjct: 61  GVSSNSRLDVNSSGLLTPGVSATDMAIDGDGFFVVRPSPTAGGSSDAVLFTRSGGFQTDS 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
             Y +N +   L    +     V              +  ++ +    ++      +   
Sbjct: 121 SGYLRNDAGMYLYAWPVQADGTVN-------------QNPSNVDTLEAVNLSNIGGTANA 167

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             +  I     +           D      +   G  T        +  T  G       
Sbjct: 168 TSSVRINANLQASTTPSAAAATYDPTASGTNMASGTVTPDFERTIQIYDTQGG------- 220

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            R +    +   T  ++ +             G+ +  G+I   +   D+   I      
Sbjct: 221 VRSVTMSFLKHATNANQWHVELHVQPASDVTTGAPLIDGQIATGIVAFDTNGEIVPGAPT 280

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +   L       D              + G+      L  G + T     Q+ S  +  
Sbjct: 281 TLPTSLPFE--ASDAAGAVGAGAVRWAASTGVGAQTISLDLGTAGTPGGITQFNSPSNLD 338

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 +    +    ++    L   + +   +     PVA +     L         + 
Sbjct: 339 STVVDGAIFGAFAGVEVSDDGFLSARFTNGVVRRVYQLPVATVFNPNGLASVGGA--SFQ 396

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S +  L+         I+        V++  E S LI  +++Y+ S+++I   D+M
Sbjct: 397 ITEDSGAFTLNAPGSGASGTIAAKTVENSNVDIATEFSNLIITQRAYSASSRIITTADEM 456

Query: 472 LQTLLEGVK 480
           L   ++  +
Sbjct: 457 LAEAIQMKR 465


>gi|254294563|ref|YP_003060586.1| hypothetical protein Hbal_2209 [Hirschia baltica ATCC 49814]
 gi|254043094|gb|ACT59889.1| protein of unknown function DUF1078 domain protein [Hirschia
           baltica ATCC 49814]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 137/488 (28%), Gaps = 38/488 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVT 54
           MS+ +            +   A+   NI N +   + R     T    N       +   
Sbjct: 1   MSIGSALLAGTAGLRANASAMAATSENIANVNTVGFKRIRNDFTAMLNNQNYQSSYSAGA 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            R+    +  +   L + S +       + +   +        ++        +      
Sbjct: 61  VRATATTLMREQGTLQSSSVSTHMAISGEGYFVTRARGGDATSFDEYSYTRAGQFAPDEG 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y KN +   L    I N + V  +            +         ++     LS    
Sbjct: 121 GYLKNTAGQYLYGWPIVNDQVVNASPTDLTA-----LSAVRVSGYGGVAEASANLSITAN 175

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N     +  +             +    +  + +       + +           E   
Sbjct: 176 LN---ADQEVNPATYTAGDMAAGNITPDFTTPLEVYDSKGGRHTVNFSFLKTANANEW-- 230

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            ++      S  +   ++ +  +G ++ +  G             + D V         +
Sbjct: 231 -EVEAYVTPSTDIEGVTDGLLANGKMIFTASG-------------LIDPVATNALADGFD 276

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
               +    S+   +       P      GI+  D +L  G   +     QY S+     
Sbjct: 277 PEGSISIGASDPASVGTT----PRWADGLGIEAQDIQLDLGNGNSTTGLTQYSSDSILDT 332

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                         ++     +I  Y + F++     PVA       L+  A     +  
Sbjct: 333 STVDGVPFGSLASVDVDEDGVVIAQYTNGFSRKIFQVPVATFGNEGGLIAQAGG--SYRS 390

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +   +L          +  S   +  V+L EE S LI  +++Y+ ++K+I   D+ML
Sbjct: 391 GPETGDMNLRAPKSGEAGEVISSALESSTVDLAEEFSNLIVTQRAYSAASKIITTADEML 450

Query: 473 QTLLEGVK 480
             L+   +
Sbjct: 451 NELISIKR 458


>gi|229827760|ref|ZP_04453829.1| hypothetical protein GCWU000182_03152 [Abiotrophia defectiva ATCC
           49176]
 gi|229787959|gb|EEP24073.1| hypothetical protein GCWU000182_03152 [Abiotrophia defectiva ATCC
           49176]
          Length = 618

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/418 (11%), Positives = 115/418 (27%), Gaps = 26/418 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN 49
           S     +      +       +   NI NA  + Y R+                      
Sbjct: 3   STFFGLDIGTTGLHTYQAALNNTAHNITNAKTEGYSRQQVNRQAKDPIAIAQRYGMVGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V            +D      ++  G       +    +    ++  +         L +
Sbjct: 63  VIANKISQIRDEYYDLKYRTANTVNGAYESRTYYLKNIQNFL-NEIKDGGFNTNFKNLFN 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            +    K+         +++ A  + + FN  +  ++  + + +  I+  +  +  +  +
Sbjct: 122 GMSEVEKDPRSKSARAQMVNQAYALTEYFNNLSENLKNTQNEVNFNIKNTVDTINSYADQ 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR-----------NNNDMV 218
           +  +   I     S   A+D  DQR++L+ K+SE+  +S                     
Sbjct: 182 IATLTKQINMIEVSGGFANDLRDQRNLLVDKLSELADVSVKEERIGEELSGSLSGVTTYT 241

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALL 276
           V  + G  +       I     N  +  ++   ++        + +  ++   GK+ AL 
Sbjct: 242 VKINGGYLVNNYRANRIETVPRNYKSNINDVEGLYDLKWSDGQNFSTHNSHLGGKLGALF 301

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++RD           + A       + +D    + E +            +     G   
Sbjct: 302 EMRDGNNRASLRCNVKEASEGDTELTLEDTNINSVEAMNFPPKGRITVGGEEYEYTGFEV 361

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
            I  +P    +           K    ++         I    +     +  D +   
Sbjct: 362 KIEKDPDTGKDKFKYIFKLKEDKPITKDITEDDKIVAKIGEQVNFKGIPYYMDQINNF 419



 Score = 96.6 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 92/288 (31%), Gaps = 11/288 (3%)

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
           E   I+++   N       + G   +E    ++  EK              +      + 
Sbjct: 329 EDTNINSVEAMNFPPKGRITVGGEEYEYTGFEVKIEKDPDTGKDKFKYIFKLKEDKPITK 388

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA-- 320
             +   K   K   Q+    +P + +Q++   R     F+E      + +   G      
Sbjct: 389 DITEDDKIVAKIGEQVNFKGIPYYMDQINNFVRKFSKEFNEIHKTGEDLDGNKGADFFTG 448

Query: 321 -------DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                  +    +   L +  +E    + +  +         SV++ F  N   +A    
Sbjct: 449 VDEVTGENYKFKVPGTLDEDGNEVTEFSSEDETYYRITAHNYSVARTFKENPSLIAAAKT 508

Query: 374 LINHYCDSFNKNFIFD--PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
           + +   ++     + +      +       E+ ++    +  +   +         +   
Sbjct: 509 ISDGVENTEVMKKLENLQKDRTMFDQGKPEEFYQSLTSDIGVDTKTAETFSTNQDKMVKA 568

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           I+    +  GV+  EE   L+K +  YN+S K+I   +++   L+  +
Sbjct: 569 INNQRLSISGVDNDEEAMDLVKFKNCYNLSAKVITVMNEIYNKLINEM 616


>gi|159045919|ref|YP_001534713.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12]
 gi|157913679|gb|ABV95112.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/490 (10%), Positives = 130/490 (26%), Gaps = 66/490 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54
           M++ +  N   +  N  + + A+I  NI N+    Y R +           S    +   
Sbjct: 1   MTISSSLNAGVSGLNANATRLATISDNIANSSTYGYKRAEADFQSLVINGNSSGTYSAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI--SKLRDS 110
            R     + D+   L   S+             +  + + D++    P   +       +
Sbjct: 61  VRVTTTRVIDEQGPLVTTSNPTDLAVGGSGMLPVTTLSALDENTGGYPLSLMTTGSFSPN 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +      +  +L          V +    +   ++ I  + ++      + +       
Sbjct: 121 ADGVLTTETGMVLMGWPAAPDGTVPEFPRDTVDGLEPITVNLNQFAGDPTTRI------- 173

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +   +         + D +D        +     +                       
Sbjct: 174 -DLGVNLPASETEAGSSGDSIDLSIEYFGNLGTSETLGVTYTPQVPAS------------ 220

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      + T+T  ++   + G    +   S    G + ++  +        Q  +
Sbjct: 221 -----GASNTWTMTITDSASGGAVVGEYELTFDDSRGAGGTLASVTAVSGGPFDPVQGTV 275

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +  A                                   +  G         Q     + 
Sbjct: 276 EITADG-----------------------------GPVTVKIGSVGDENGMTQLSDTFAP 306

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +    + S     +   +     ++  Y   F +     P+A +     L   +R++  +
Sbjct: 307 VSISKNGSPVGNLSTVEVDPNGFVVAVYDTGFTRTIYQVPLADVPNPNGL--LSRDNQSY 364

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S    L    +     +          ++  EL+ LI  +++Y+ + K+I   D+
Sbjct: 365 MISPESGPFFLWNAGEGPTGDVIGFALEESAADVAGELTRLITTQRAYSSNAKIIQTVDE 424

Query: 471 MLQTLLEGVK 480
           MLQ      +
Sbjct: 425 MLQETTNIKR 434


>gi|89092142|ref|ZP_01165097.1| flagellar hook-associated protein [Oceanospirillum sp. MED92]
 gi|89083877|gb|EAR63094.1| flagellar hook-associated protein [Oceanospirillum sp. MED92]
          Length = 750

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 139/443 (31%), Gaps = 11/443 (2%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSENKNM 62
           ++               A   +NI N + + Y R+  +         V +          
Sbjct: 2   SLLLLGTQSLQANQSALAVTGQNISNVNTEGYSRQRPVFESREGRAGVVLEDVDRIADAF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ +   S+        + F    + + A D    S +  +     +L++   +     
Sbjct: 62  LNRQIWTDSATFSSYDAFEDFANELDNLLASDV--TSVSKAMDDYFGALQTAVDDPVSLP 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +  I   E +VQ FN     +++     +  +E  ++ +    + +  +N  I    A
Sbjct: 120 NRELFIAQTEALVQRFNDLDANIRRQNDTINGRLESNVAAINVISANIAQLNQDIAVAQA 179

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +   + LD+RD  L+++S  IG +TI +   ++ V+  +G  L   +  +      + 
Sbjct: 180 SGNVNSELLDKRDAELEELSTYIGFTTIEQPTGEVSVFVGNGEPLVVGLSANQMTTLFSP 239

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              +  +  + I   V   +  + +  GKI  ++  RD ++    +++  +A VL  + +
Sbjct: 240 ADSSQLNIGLQIGNSV--GDITNQLSGGKIGGVIDYRDDILGDTLDEMGRIALVLAETMN 297

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NPSFLRDGGSVS 358
            +     +     G  I   I        + +S               + + L       
Sbjct: 298 SQHQKGMDLNGAAGGLIFTDINSASAVSSRVLSARDNATLVTAGITINDVTALEAAEYSL 357

Query: 359 KKFLWNVKNLA-GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +    N   L  G  +      +              +    L   + +    ++     
Sbjct: 358 EFNDGNTFTLVRGDDEQRWSNSNISLTQVASASDVDQDGEYFLDTVSGDMTLRVDGFTLT 417

Query: 418 SHDLHMKSQVVFNHISESYSNTV 440
                  +      +  + +   
Sbjct: 418 MSTPGAFATGDQFILRPTRNAAS 440



 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/416 (13%), Positives = 119/416 (28%), Gaps = 18/416 (4%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDIL 123
           L A   ++             +      + N S T   S      +          +  L
Sbjct: 350 LEAAEYSLEFNDGNTFTLVRGDDEQRWSNSNISLTQVASASDVDQDGEYFLDTVSGDMTL 409

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                         F T  + + +   +A  EI  EI+   +      +   A    T +
Sbjct: 410 RVDGFTLTMSTPGAFATGDQFILRPTRNAASEISAEINIASQLALAAPLATSASAENTGT 469

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
              +       D     +S + G  T   N +   + T+ G+        DI     NS 
Sbjct: 470 GTISVSI---TDKDYNDLSAVPGAMTPPVNVSFSPLATAPGSI---NSTNDIEARVTNST 523

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
            + +   P+ +     +    + V  G       +  + V    NQ++     L+   + 
Sbjct: 524 DLANVQFPVTVTYTAGAPGTYAVVDNGG----TTLIAAGVADGNNQVNVPGYGLLLDVNT 579

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                   +             L +     +          + +   +    + +    +
Sbjct: 580 VPQNGETYQISHMSDTGVMSYVLTDGDGDRMVGDYTSGQSIQLSGYEITINNNPNVNDKF 639

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
            V    G         +           A +    +  +    ++  +    + +     
Sbjct: 640 TVNPNTG-----GVSDNRNALLMSDLQSAKLIEGASYQDKYGQTVERVGTQAAVAQVNAQ 694

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             + V +   E  ++  GVNL EE + L++ +Q+Y  S +LI     +  +LL+ V
Sbjct: 695 AGKSVLDSNKELRASIAGVNLDEEAAKLVQYQQAYQASAQLIRAAQTIFDSLLQSV 750


>gi|148554183|ref|YP_001261765.1| flagellar hook-associated protein FlgK [Sphingomonas wittichii RW1]
 gi|148499373|gb|ABQ67627.1| flagellar hook-associated protein FlgK [Sphingomonas wittichii RW1]
          Length = 450

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/491 (13%), Positives = 147/491 (29%), Gaps = 58/491 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISP 47
           +  +    ++         A++  N+ NA+ + Y RR  +                +   
Sbjct: 1   MSDLLQIGRSGVVAYRTALATVGENVSNAETEGYSRRKVVLNESAVSAANSYIYRSSAVF 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V   + +    N         +S   +     ++    E     D  +      +S +
Sbjct: 61  GGVEAGSVQRIFDNYRSTYARFANSEAARADAKATWLDTAEAAL--DDSDVGLGVKMSSV 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + E+ S ++S D    T++      V  F T++  ++        E +  ++ L   L
Sbjct: 119 FTAAEAMSADVSSDTNRLTLLTALGNAVNQFKTTSTALRSAADGVSTEAQNAVAKLNDDL 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             L  +N A++   A         DQRD +LQ IS  +GI   + ++    V     +T+
Sbjct: 179 RTLVQINSALRRAGAGSSGQALLQDQRDQVLQSISNAVGIDVKLEDDGRATVKLLGDSTV 238

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   N   +      S    +   G    S        G +  L    + ++   +
Sbjct: 239 TLVDAASTNAGYVGLVASDSGRFSLIASGFG--SEMAMNPQSGSLAGLADAAN-IIASRR 295

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           + LD +A       ++ +    +                                    +
Sbjct: 296 DSLDAIAGRFAQVINDWNSAGVDRNG---------------------------------D 322

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P      G+ +        +L+          +          +     +          
Sbjct: 323 PGAALITGTTADTLEVTTSDLSKIAAAKGGVANG-----NALALKDYRNSTGPEAQWSQL 377

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +    ++ S +      +    +   +      GV+L  E + L++ +Q+Y+ S ++I  
Sbjct: 378 VSAHAQSVSAAKAEKTATATQRDGAYQQLDEVTGVDLDVEAAQLLRFQQAYSGSARIIQV 437

Query: 468 TDKMLQTLLEG 478
             + LQ +L  
Sbjct: 438 ARETLQEILGL 448


>gi|329901236|ref|ZP_08272761.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549168|gb|EGF33760.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 644

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/454 (13%), Positives = 154/454 (33%), Gaps = 16/454 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + +  Q+    A     +   NI NA    Y R+  + T +              TV
Sbjct: 1   MGNILSVGQSGLLAAQLGVTTTGHNIANAATPGYSRQVVIQTSAGGQSSGDGFVGQGTTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + +          ++A  ++        +  +    + AD   +   +  +S   ++++
Sbjct: 61  ASIQRIYDAYTATRVNAAQTSKASLDAYSTQVSQINNLLAD--SSTGLSPTLSNFFNNVQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +   +     +T++   E +   F +   ++ +I    + +I   + ++  +  ++  
Sbjct: 119 GLAAAPNGSAQRQTLLSAGESLAARFQSLDSQLSQIGEGVNAQIVSNVGSINAYGQQIAK 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +NDAI+  +  A     +D LDQRD ++ ++S+++ ++   +  +   V   +G  +   
Sbjct: 179 LNDAIEKASSGAGGAPPNDLLDQRDQIVSELSKLVKVTVDNQAGSGYNVSIGNGQPIVVG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      S T  S+    +  G  + S   S++  G +  LL  R + +   +N+L
Sbjct: 239 TT-TFALSIATSQTDASKLVVAYQSGSTLLSLPDSSISGGTLGGLLDFRTNSLDPARNEL 297

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  L  SF+E+  +  +   + G         L +      +    ++    S+   
Sbjct: 298 GRVAVGLATSFNEQSKLGVDQNGIAGKDFFKVAGPLVSPSKLNSASNPAISATIASSTDA 357

Query: 351 LRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                S     +      +    D  + Y  +F            +     +    + + 
Sbjct: 358 ASLTASDYSVAYDGINYTITRLSDKFSAYTGAFPPTVGPVDGITFSVGTGTMAANSSFLV 417

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
               + + S  + +         +       G N
Sbjct: 418 RPTISAAGSIAVKLTDTTEIAAAAPVVLAATGTN 451



 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/440 (12%), Positives = 124/440 (28%), Gaps = 15/440 (3%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
               S  NV++   +          L   +S     +L+ ++++   ++S  D   +S +
Sbjct: 219 NQAGSGYNVSIGNGQPIVVGTTTFALSIATSQTDASKLVVAYQSGSTLLSLPD---SSIS 275

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                      + S + + + LG+  +  A    +       +      D  K     +S
Sbjct: 276 GGTLGGLLDFRTNSLDPARNELGRVAVGLATSFNEQSKLGVDQNGIAGKDFFKVAGPLVS 335

Query: 162 NLRRFLSELTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +   +    ++  I   T +    A D+    D +   I+ +    +         V 
Sbjct: 336 PSKLNSASNPAISATIASSTDAASLTASDYSVAYDGINYTITRLSDKFSAYTGAFPPTVG 395

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
             DG T             + + T+ + S+ +    +  + +    +      A      
Sbjct: 396 PVDGITF-----------SVGTGTMAANSSFLVRPTISAAGSIAVKLTDTTEIAAAAPVV 444

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                      +++   + +     P A   +        D +           S     
Sbjct: 445 LAATGTNGGNGKISAGSVDASFLTTPPALPLKLKFSNGTFDTVPASLTTPISYTSGANVT 504

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                 N +     G              G    +        KN +    A    + TL
Sbjct: 505 LNGISFNITGAPLEGDTFTIAANTSGVATGDNRNVVALGALQTKNLLVGVGAANTPSTTL 564

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                  +  +     +          + + +     +  GVNL EE S L++ +Q+Y  
Sbjct: 565 AGAFGLMVNNVGNKTREVMANAASEGKLVDSVLAIQQSQSGVNLDEEASNLLRYQQAYQA 624

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           + K++     +   LL   +
Sbjct: 625 AGKIMQTASTLFDVLLSLGR 644


>gi|85710170|ref|ZP_01041235.1| flagellar hook-associated protein 1 [Erythrobacter sp. NAP1]
 gi|85688880|gb|EAQ28884.1| flagellar hook-associated protein 1 [Erythrobacter sp. NAP1]
          Length = 452

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/488 (11%), Positives = 136/488 (27%), Gaps = 52/488 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENV 50
             + +  ++    A        +NI NA N +YVRR                 + S   V
Sbjct: 3   TNLISIGRSGAAAAKASIELTAQNIANASNPDYVRRSLQLTEFVGVARIDFQSSSSLAGV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +      N  +  +     +S + +     +     E         +     +     +
Sbjct: 63  RIGGIERPNSELIQRRARDSASDLARAEAELTGLRDAETAL----EQSGLFRGLVDFEAA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L     + ++  L    +++A ++ Q F  +   +   R   + ++ + +  +    SE+
Sbjct: 119 LRVLEGDPTDQALRAGALESARQLAQTFQLADFSLGNARQLVEDDVNVGVDRINGAASEV 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +             LD RD  L++IS   GI           V           
Sbjct: 179 ARINLELANARDGTAAQASLLDARDAALREISSEFGIIARFDEFGAAEVRLVG------- 231

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      + +   E   + ++G   S       P+G   A      +        +
Sbjct: 232 -----------TPSPAGEEGLLLVEGGKFSELSAQIDPQGT--ASFNFGGAPFAPLSGAM 278

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
              A  L       D     S             +        +  +        S+   
Sbjct: 279 AGRASALT------DLSGRQSSLDAIAGQTIAQANAAQASGAALDGSAGQPLFSGSDAGT 332

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +    +  +                 +  ++ +          +  +   +      +  
Sbjct: 333 IELALASGEDLALAPAGSPPASRDTANLSNALDA---------LGADDGPIASVDRLLLS 383

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L    S          ++ +       +  GV+L  E + LI+++Q++  ++++I    +
Sbjct: 384 LSSRISGIETTREGLAIINSSAQADLLSETGVDLDAEAASLIRLQQAFEANSRVIQVASE 443

Query: 471 MLQTLLEG 478
           +  T+L  
Sbjct: 444 LFDTILGL 451


>gi|54307270|ref|YP_128290.1| flagellar hook protein FlgE [Photobacterium profundum SS9]
 gi|46911690|emb|CAG18488.1| Hypothetical flagellar hook protein FlgE [Photobacterium profundum
           SS9]
          Length = 472

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/480 (9%), Positives = 114/480 (23%), Gaps = 19/480 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
             N   +     S+Q  SI  NI N     Y    T              +  V   +  
Sbjct: 2   SMNIGMSGLIATSEQMNSISHNIANVGTAGYKSSRTEFQDIYAPEFGGGEMNGVEVAAIR 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
           ++  +                       E     ++                +       
Sbjct: 62  QSFKNGTTTPTGRNGDLAING-------EGFFMVENKGQQMFTRNGVFNLDKDGNLVASD 114

Query: 120 EDILGKTVI-DNAEEVVQNFNTSAREVQKIRADADKEIELEIS-NLRRFLSELTVVNDAI 177
              L    +    +           E   + A +  ++ +E++ +            D  
Sbjct: 115 GSHLQGYGVTGTGQIQTGTITDLTVETGDMPARSSTKVNMEVNLDANSLAIVPKTPFDPE 174

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              T +        D      +     +  +     +   ++      T   ++  D   
Sbjct: 175 DPSTFTSSATTTVYDSLGAEHEVTQYYVK-TADNAWDVHYLIDDEKTATKTASMAFDSEG 233

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           +    Y   +     +++    +    +A             D V+        ++A   
Sbjct: 234 KLSAIYDPANPVVATYLNASTKAREAVAASTVADAALAANPTDKVLIDAAAT-AKVAAKT 292

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               +    ++ +      + +       +    Q I   +    Q+    +  ++    
Sbjct: 293 ATDAAALAKVSADPIAAATVAVDLAFTPNNGSANQTIKFDVAETTQFGKEFAITKNSQDG 352

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G   +   Y +   K      +A       L +       W +   S 
Sbjct: 353 HAPGQVAGWYFEGDGRVFARYSNGQTKVQGQVSLARFPNQEGLQQAGN--TRWTQSFSSG 410

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  +         ++         V+L  E+  L+  + +Y  + K I    +M Q L +
Sbjct: 411 AALVGAAGTGQLGNVRTGMYENSNVDLSSEMVNLMSAQSNYQANAKTIKVAQEMTQILFQ 470


>gi|86356330|ref|YP_468222.1| flagellar hook protein FlgE [Rhizobium etli CFN 42]
 gi|86280432|gb|ABC89495.1| flagellar hook protein [Rhizobium etli CFN 42]
          Length = 434

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/481 (11%), Positives = 117/481 (24%), Gaps = 48/481 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    I             +                    +   E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +  +    I       +  L     +      
Sbjct: 121 GFQLMGYSYDSGAPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSGANIAPVAPA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S + A    D +        +   ++     N  M  +    T++    P       
Sbjct: 181 TLPSANAATTTADTK--------KFSMVAYDHLGNKVMYDFYFTKTSVVTPPPATGTAST 232

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                       +F +    +    S    G   A++   +         L   A  +  
Sbjct: 233 WEV--------AVFRNADAATGGTTSFPYTGGAGAVVASGNLTFDRNGKMLTGGALPIAD 284

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + +                               I+  +    Q  +  +        + 
Sbjct: 285 TKN----------------------------ALSINMDLSGFTQLGAAFAGTGTPNGQAA 316

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 317 SPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 373

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 374 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 433

Query: 480 K 480
           +
Sbjct: 434 R 434


>gi|110632640|ref|YP_672848.1| flagellar hook protein FlgE [Mesorhizobium sp. BNC1]
 gi|110283624|gb|ABG61683.1| flagellar basal body FlaE [Chelativorans sp. BNC1]
          Length = 422

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/481 (10%), Positives = 116/481 (24%), Gaps = 60/481 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI N+    Y R  T  +      T  +  S   
Sbjct: 1   MSLYGMMKTGVSGMNAQANRLSTVADNIANSSTNGYKRATTEFSTLVVPGTQGSYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    +     +                N  P            +    N S
Sbjct: 61  TSTVRNAVSAQGVLQYTTSITDLAVNGSGFFIVQGSNGQPYLTRAGSFVLDGDGRLVNSS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L       A             ++ I     +   +   +     S    ++  I  
Sbjct: 121 GYQLMG--YSYANGTPSATANGYAGLEPIT--IKQPELVATPSRNGVFSANLPLDAEIVD 176

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             A +  A D                                      +      +  + 
Sbjct: 177 TGAGQSTAGDNTST-----------------------SEYSVKTSLVAYGNRGEQVLLDV 213

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T   E      D    + + G     G +                           
Sbjct: 214 YFTKTGDDEWEVAVFDRADATPDTGFPYASGPLAT------------------------- 248

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                D +  +         +     +       +   +    Q  S           + 
Sbjct: 249 -----DQLTFDPTTGKLTGTSVTGVTIPVPGGDDLELDLSQLSQLDSGFQVYDAEVDGTP 303

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +   ++    +   Y D   K     P+A + +   L   + N   + E   S + 
Sbjct: 304 PTSIDSIEISAEGIVYAQYADGSFKPLYRIPLANVTSPDQLEVLSGN--AFAETAASGAV 361

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +          I+     +  V++ EEL+ +I+ ++SY  ++K+      +++ L+   
Sbjct: 362 RIGFAGSDGLGDIASGALESSNVDIAEELTSMIESQRSYTANSKVFQTGSDLMELLVNLK 421

Query: 480 K 480
           +
Sbjct: 422 R 422


>gi|167630298|ref|YP_001680797.1| flagellar hook protein [Heliobacterium modesticaldum Ice1]
 gi|167593038|gb|ABZ84786.1| flagellar hook protein [Heliobacterium modesticaldum Ice1]
          Length = 442

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/479 (8%), Positives = 111/479 (23%), Gaps = 38/479 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           N   +  +I  NI N +   + +       +                
Sbjct: 1   MMRSLFSGVTALRNHQTRMDTIGNNIANVNTIGFKKSRVTFADA---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ +   SS  G                       +     +    +    +   S+  
Sbjct: 45  LNQTIRGASSPQG---------GRGGTNPMQVGLGMNIATMETVFTPASVQGTGKNSDLA 95

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        ++    + T A              +  +  +         ++        
Sbjct: 96  IEGDGFFLLDDGGARYYTRAGNFDLDTEYNFIRTDNGMKVMGYIADATGEIDANGDPVPI 155

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVPRDINFEKMN 241
           +  D           ++    +  +    +     + +Y S G      +          
Sbjct: 156 NIKDKLQMTASATNRVEFNKNLYSLQASAKPIQKSIEIYDSRGGKHNLVLTFKNVSNATT 215

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T    +     D         +    G +          +                 F
Sbjct: 216 PNTWQVSARITTEDPQSKKITTANGYIIGTM----------LFSTNGLFKSFQVSDSVDF 265

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                   +   +P        +  D K    +   +    Q+ S  +  +   +     
Sbjct: 266 KFPGLGVDDIGAMPNGTYTAKFEIPDVKKDTKLYLDLHAITQFNSETTIDKLSQNGYADG 325

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +     L   Y +  N+      V   +    L +   N       N S     
Sbjct: 326 DLKSYAIDAAGVLTGTYSNGQNRKMAQVAVTTFSNPAGLFKAGSNLYTR--TNNSGEPKT 383

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +      I+        V+L +E + +I  ++ +  ++++I  +D ML+ L+   +
Sbjct: 384 GQPAVGGRGAITPGALEMSNVDLSQEFTDMITTQRGFQANSRIISVSDSMLEELVNLKR 442


>gi|75675293|ref|YP_317714.1| hypothetical protein Nwi_1100 [Nitrobacter winogradskyi Nb-255]
 gi|74420163|gb|ABA04362.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi
           Nb-255]
          Length = 622

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/449 (14%), Positives = 145/449 (32%), Gaps = 21/449 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-----TMTTISPENVTVVTQ 55
           MSL +  + A +         + +  N+ NA+   YV +       +T      V V+  
Sbjct: 1   MSLSSALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQVVTGGMGSGVRVIGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      L   ++       +       + +      + +     ++   +L++ S
Sbjct: 61  NRTLDAYVQSQLRTENAGGAYASHIAGVLGQLQNVYGTPGNDGTLEAAYNRFTSALQALS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +        +V++ A+ +    N +   +Q +R++A++ +   +S     + ++  +N 
Sbjct: 121 ASSGNPAAQSSVLNAAQALAHQLNATTSGIQTLRSNAEQSLSASVSQANAAMQQIAQLNQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPRD 234
            ++   A    A   +DQRD  + ++S ++ I  +    N   V+T+ G  L        
Sbjct: 181 RLQSMGAQDPAAATLMDQRDAAIDQLSGLMDIRAVTDGANQTSVFTTAGVQLVGGVYAST 240

Query: 235 INFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           + F   +S T +S+ N                +G  +       +  G+I A  Q+RD +
Sbjct: 241 LTFNAQSSLTASSQWNADPAKSSVGTIICQLPNGARIDMIASQGINSGQIAADAQLRDKI 300

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   QNQ+D+MA  L  + S+           P  F  D    L     +          
Sbjct: 301 LVQAQNQVDQMAATLASALSDVTTSGAPVTGPPSGFDLDLSGILPGNAFRVTYTDSANVS 360

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKN---LAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              +                 N  +      +   +       N           + + +
Sbjct: 361 YTVTVVRVDDPSALPIPNAAANPNDRVIGVDFSGGLASVVSQLNAQIGAASHLMFSASGS 420

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           LL  A +  G    + + +          
Sbjct: 421 LLRVADDGSGQSTVSAASATTTVQSLASG 449



 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 110/412 (26%), Gaps = 10/412 (2%)

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
           +          F      +    + +    +  S L  S +  +      +         
Sbjct: 214 AVTDGANQTSVFTTAGVQLVGGVYASTLTFNAQSSLTASSQWNADPAKSSVGTIICQLPN 273

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
              +    +      +I ADA    ++ +    +       +  A+   T S        
Sbjct: 274 GARIDMIASQGINSGQIAADAQLRDKILVQAQNQVDQMAATLASALSDVTTSGAPVTGPP 333

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
              D+ L  I           ++ ++        T+              +         
Sbjct: 334 SGFDLDLSGILPGNAFRVTYTDSANVSYTV----TVVRVDDPSALPIPNAAANPNDRVIG 389

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
           +   G + S         G    L+      +    +     + V   S +       + 
Sbjct: 390 VDFSGGLASVVSQLNAQIGAASHLMFSASGSLLRVADDGSGQSTVSAASATTTVQSLASG 449

Query: 312 ENVPGLFIADGI-----KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           +     F                   G++  I VN    ++PS L    +       +  
Sbjct: 450 DPQLPFFTDRASLYTGAITGSASQITGLAGRIQVNAALLADPSKLTVYSTSPVTPAGDTT 509

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                 D +  +             A      TL  + +  +       + +  +     
Sbjct: 510 RADFIYDRLT-FASFSYAPNTGLGAAAAPFQGTLSSFLQQFVSLQSGAATTARQVAQGQS 568

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +V N + E + +  GVN+  E++ LI ++ SY  +  ++     M+QTL++ 
Sbjct: 569 IVVNTLQEKFDDKSGVNMDTEMANLIALQNSYAANAHVMTVVQSMMQTLMQA 620


>gi|119503650|ref|ZP_01625733.1| flagellar hook-associated protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460712|gb|EAW41804.1| flagellar hook-associated protein [marine gamma proteobacterium
           HTCC2080]
          Length = 556

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 132/394 (33%), Gaps = 14/394 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +           +   +  ++  +NI N + + Y R+    +               V V
Sbjct: 1   MANTLGIGTTALSALQRAISTTGQNIANVNTEGYSRQSVSLSARPAQDIGAGYLGSGVQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +            +   +++ G   L  +     + M  D   + S    +     S E
Sbjct: 61  TSIDRAYNQFLANDVQQRTASSGYYSLYANAAERVDSMLGDP--STSIAQAMDSFFASAE 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + + +     + ++ NAE +VQ F+     +  +  + + +I   +S + +    +  
Sbjct: 119 AVANSPTSLPERQVMLSNAETLVQRFDYIVSRIDDVTKEMNSQINSAVSEINQLAGGIAT 178

Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N+ I   +       +D LDQRD LL ++S ++   T+ +++  + V+   G  L    
Sbjct: 179 LNNEIAKVSGGSTGLPNDLLDQRDALLVQLSSLVDTKTLAQDDGSLNVFIGRGQPLVTGS 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +    + +    ++    +    V  SS+    +  GK+ A L + D VV   + +L+
Sbjct: 239 VAETLATQTDPELGSTSLVTLSA-FVAGSSDVSDFLTGGKLGAALTVTDEVVNPTRRELN 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A     + +       + + V G+ +    + +          T        +     
Sbjct: 298 LLAVGFAETVNAIQEAGDDLQGVDGVALFTETEGVVKSAASVDDSTANSGNATVTFTVTD 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
               +     +          +L      +   N
Sbjct: 358 AKLLTGDSYRVDYTATGVNLRNLTTDAVTTLTAN 391



 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/400 (9%), Positives = 96/400 (24%), Gaps = 18/400 (4%)

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                +    +     +S+     +L      L   ++     +    + +   RD+L  
Sbjct: 147 IVSRIDDVTKEMNSQINSAVSEINQLAGGIATLNNEIAKVSGGSTGLPNDLLDQRDAL-- 204

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                        V  ++    +        +          +   ++      ++  + 
Sbjct: 205 ------------LVQLSSLVDTKTLAQDDGSLNVFIGRGQPLVTGSVAETLATQTDPELG 252

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           + ++   +A    + D  D         +  +    +     ++ +        F     
Sbjct: 253 STSLVTLSAFVAGSSDVSDFLTGGKLGAALTVTDEVVNPTRRELNLLAVG----FAETVN 308

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            I     +   V   +     +GVV S+            A +    +   +       +
Sbjct: 309 AIQEAGDDLQGVDGVALFTETEGVVKSAASVDDSTANSGNATVTFTVTDAKLLTGDSYRV 368

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                G           +         DG++          +        +  +P F   
Sbjct: 369 DYTATGVNLRNLTTDAVTTLTANPQTVDGVRVTYTAQAATGAAGANQGDAFIVDPLFQAS 428

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                K         A       +  +      + D      +  T  +   N +  +  
Sbjct: 429 SLFAVKIDDPAKIAAASNNGAAGNNSNMLAMIELRDQSLLKGSTATYGDVYNNLLSDVAV 488

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
               +         +     +  S+  GVNL EE + L++
Sbjct: 489 RTQRAQSSAETETALLGSALDRQSSLQGVNLDEEAANLVR 528


>gi|300870390|ref|YP_003785261.1| flagellar hook protein FlgE [Brachyspira pilosicoli 95/1000]
 gi|300688089|gb|ADK30760.1| flagellar hook protein, FlgE [Brachyspira pilosicoli 95/1000]
          Length = 441

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/491 (8%), Positives = 110/491 (22%), Gaps = 63/491 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++       +   N   +   +  NI N +   + +                 + +    
Sbjct: 1   MMRSLFAGVSGLQNHQTRMDVVGNNISNVNTYGFKKGRVTFKDMISQSLSGAAKPQEDRG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +        E    +   N+S          
Sbjct: 61  GINPQQVGLGMQVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKKGNSSYYTRNGAFSI 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N S     +                      +  +    +E  I  +      
Sbjct: 121 DKNGYLVNPSNGYKVQGWNAVLNPETG----------MMELNTAAGVEDLIIPVGSKDPA 170

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               N           D                            +   +   D T +  
Sbjct: 171 RATQNTKFFCNLQKNSDT---------------------------HQADLTIYDSTGIPR 203

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +    N   +N + +  E        V VS+             L+      +    + 
Sbjct: 204 QLRATFNRTDVNRWDMVIEIPEATEGSVSVSAGDPVENGGNNTFQLVFNDAGSLISVSDG 263

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            +     ++           + E            +    L  G         Q+ S  +
Sbjct: 264 TNTQTEGVLMPNVSFTYTGTDGE-----------VNQTINLTMGEVGLFNGITQFESPST 312

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                       +    +      +   + +   K      +A       L +       
Sbjct: 313 TKAIEQDGYTMGMLEGFSFDDSGQITGVFTNGNRKTLGQVALAKFANAGGLEKAGDTL-- 370

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E N S + ++ + +      I         V+L E+ + +I  ++ +  + + I   D
Sbjct: 371 FVESNNSGAANIGVAAAEGRGSIKAGTLEMSNVDLSEQFTDMIVTQRGFQANARTITTAD 430

Query: 470 KMLQTLLEGVK 480
           ++LQ ++   +
Sbjct: 431 QLLQEVIALKR 441


>gi|121533754|ref|ZP_01665581.1| protein of unknown function DUF1078 domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307745|gb|EAX48660.1| protein of unknown function DUF1078 domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 420

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 118/478 (24%), Gaps = 58/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   I  NI N +   +                          
Sbjct: 1   MMRSLFAGVSGLRNHQTRMDVIGNNIANVNTIGFKASRVNFQDILSQTMQGASSGIGNQG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +           L  S  ++  + +            +S         S +  +  
Sbjct: 61  GTNPIQI--------GLGVSIASIDTIFTDGSFQPTGKQTDLSIQGKGFFVLSPDGGKTE 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +     +   + + NF       + +   AD    ++    +R   ++            
Sbjct: 113 VFTRAGNFDFDRLGNFIVPGTGYKVVGWKADSNGNIDTDPSKRTTIDI-----------P 161

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                     +       +S      T V+ + D+        TL     +  +     +
Sbjct: 162 VGTQMPAQATKAITFANNLSADAANGTTVKVSYDIYDNLGKRYTLPVVFTKTGDTTWDYT 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            + TSE     +    V+         GK+ +      + +                   
Sbjct: 222 ISNTSEYTVATLPATSVTGRLTFDAATGKLSSTTPPTVTTID------------------ 263

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                     +   GI        QY  + +             
Sbjct: 264 -------------------ISYTTPAQKVSGIQLKFDQVTQYGGDTTLQIVDQDGYPPGS 304

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++  + +   +N     +A  N    L +   +       + S + ++ 
Sbjct: 305 LEGVTIDPNGVIVGRFSNGKTRNLAQVALATFNNPAGLTKIGDSLYAV--SSNSGTPEIG 362

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +        ++        V+L +E S +I  ++ +  ++K+I  TD+MLQ L    +
Sbjct: 363 VTGSGGRGKLNPGTLEMSNVDLAQEFSNMIITQRGFQANSKIISVTDEMLQELANLKR 420


>gi|89056664|ref|YP_512115.1| hypothetical protein Jann_4173 [Jannaschia sp. CCS1]
 gi|88866213|gb|ABD57090.1| flagellar hook protein FlgE putative [Jannaschia sp. CCS1]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/490 (10%), Positives = 124/490 (25%), Gaps = 61/490 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M++ +  N      +  + + A+I  NI N+    Y R     +           +    
Sbjct: 14  MTISSSLNAGVAGLSVNASRLATIADNIANSGTNGYKRATADFSSMVIDQGGGTYSAGGV 73

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT---HYISKLRDS 110
           R     + D+   L   ++        + F  +    + +                 R  
Sbjct: 74  RVTTGRLIDQSGALATTNNGTDLAVRGRGFLPVTRSSAVNAAAGAELPLYLATTGSFRTD 133

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            + Y    S   L     D    V      ++  ++ ++ + ++      + +    S  
Sbjct: 134 ADGYLVTSSGVTLMGWPADADGNVPSFPRDTSAGLEPVQVNVNQFTSEPTTRI----SLG 189

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +        +S       ++  D L    S                 +T     + + 
Sbjct: 190 VNLPGTDTTSESSGDTRQLSVEYFDNLGTSQS-------------IEAFFTPTVPVVGDP 236

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S +  +      +      +                             
Sbjct: 237 ASNTWTMTLRDSASNNAVIGEYTVVFDDSRTG---------------------------- 268

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                  I S S+  P+ G   +     +   +     ++  G   +     Q   N + 
Sbjct: 269 ----GGTIQSVSQPLPVTGGGWSATEGTLTVDVLGGPIEINIGAQGSGSGLTQLSDNFAP 324

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                  S         +     +  ++     +     P+  +     L+         
Sbjct: 325 TSISKDGSPVGNLVSVEVDPNGFVKANFDVGITRTVYQIPLIDLPNPNGLIAEDNQLYTT 384

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S S  L          +          ++  EL+ LI+ +++Y+ + K+I   D+
Sbjct: 385 --SAESGSFFLWDAGDGPTGDVVAFALEESTTDVAAELTQLIQTQRAYSSNAKIIQTVDE 442

Query: 471 MLQTLLEGVK 480
           MLQ     ++
Sbjct: 443 MLQETTNIIR 452


>gi|167750617|ref|ZP_02422744.1| hypothetical protein EUBSIR_01594 [Eubacterium siraeum DSM 15702]
 gi|167656296|gb|EDS00426.1| hypothetical protein EUBSIR_01594 [Eubacterium siraeum DSM 15702]
          Length = 519

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/516 (11%), Positives = 153/516 (29%), Gaps = 46/516 (8%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD------------------TMTTI 45
                  +     A +       N+ N D   Y R+                       +
Sbjct: 5   FLGLEIQKRSVQMAQKALDVTGNNLSNRDTVGYTRQRLDVYSSYMNMNGIYTTKLARLGL 64

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM---SADDHYNNSPTH 102
           S + V          +  DK    +S  + +     S  +  E      +D + N    +
Sbjct: 65  SSQGVFASGVSQTRDDYLDKRYRDNSCYVSEYNQQASIMSEIETALTNFSDTYENVGMAY 124

Query: 103 YISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              + + +L  Y+++ ++ + L   V + A  + + F   + +++ +      ++   + 
Sbjct: 125 QFDQFKSALRKYAEDSADREELASVVRNQAYNICKLFTQQSMDLKNLENQTLYDLHSTLE 184

Query: 162 NLRRFLSELTVVNDAIKF--------------KTASKHDAHDFLDQRDVLLQKISEIIGI 207
           +  R + E+   N  I                     +  ++ LD R+ L+ ++SE   I
Sbjct: 185 DANRIIEEIVEYNKQIVNEYAITGADLIYNGLSVTGGYGPNEMLDARNNLIDQLSEFGDI 244

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
                 +  + + T  G T+ +    ++     +     ++        + ++      +
Sbjct: 245 HVDDNFDGSVKI-TMGGLTIIDGKKSNLFVTGKDFDAYNAKYEENGAVVLKLTDGNDMVL 303

Query: 268 PKGKIKALLQIRDSVVPIFQN----QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
             G IKA   + +                           K      ++   G    D +
Sbjct: 304 ESGSIKAYTDMINGNGAYASGKQTTDYGIKYYQSAVDEFAKQFAGLMNKLNGGDESDDRL 363

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                      +  I ++  +  + + +    +          NL G             
Sbjct: 364 MFTSADGSPINAGNIRISDAWLKDATMIAKIYNEKTGTYDYPVNLDGNA-----VNKLLL 418

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                  +   +   +  ++       L +N   +             + +S    +GV+
Sbjct: 419 GMDDSVQIGKGDYEGSSYDFILFLNNRLAQNIEFAEKQCDMYTETATSLLDSRDAIMGVS 478

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             EE   ++   + +N S++++   D+ L T++E +
Sbjct: 479 ETEEGVNMLNYSKWFNASSRMLTTLDEALDTIIEKM 514


>gi|332531624|ref|ZP_08407521.1| flagellar hook-associated protein FlgK [Hylemonella gracilis ATCC
           19624]
 gi|332038987|gb|EGI75416.1| flagellar hook-associated protein FlgK [Hylemonella gracilis ATCC
           19624]
          Length = 701

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/399 (12%), Positives = 129/399 (32%), Gaps = 18/399 (4%)

Query: 16  NASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSENKNMFDK 65
                   I  NI N + + Y R+  +    P            V + T          +
Sbjct: 14  TNQNVLNVIGNNIANVNTEGYSRQQAILKSIPGQYMGTGYYGKGVEISTVTRIYDTFLTR 73

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S      +  ++    E +       +     +S L +S    +   ++     
Sbjct: 74  QAATTKSVAAGDSVRSTYMQQLESLF--PGGESGLGASVSDLLNSFSDIANAPTDLTARG 131

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  AEE+   F ++A  + ++R   +++++++I+ +     ++  VN  I     S H
Sbjct: 132 VTLARAEELSNRFQSTAESINELRIGVNQQLDVDIAAINNLSQQIAAVNKQITQALGSGH 191

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             +D +D+RD L++ +++ I  S++  ++  + ++      L             + +  
Sbjct: 192 TPNDLMDKRDQLVRDLNKYIQTSSVTADDGSLTLFVGGSQPLVMGNTASTVALVSDDFNN 251

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            ++                  +  G++  LL+  +  +   +N L  MA  +    + + 
Sbjct: 252 PNQRKFAITFNGKERVIDTGLLGGGEVTGLLRFSNEDLVQAENLLGRMALSIGTVMNNQQ 311

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP------QYRSNPSFLRDGGSVSK 359
            +  +     G  + +          +  + T+               P  ++D  + + 
Sbjct: 312 ALGLDLNGKTGNPLFNLASLPAAYSAKQNTGTLNNLSVGISLNDSTGTPDGMQDFLASNY 371

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
           +  +     A +  ++    D   +   F       +  
Sbjct: 372 EITFTSTGAAPFTAVVTRLSDGVQQTVSFADNVANASTN 410



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/444 (10%), Positives = 117/444 (26%), Gaps = 8/444 (1%)

Query: 38  RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
           +   + T       V      +      ++ A +        + +    ++ +  D +  
Sbjct: 264 KERVIDTGLLGGGEVTGLLRFSNE---DLVQAENLLGRMALSIGTVMNNQQALGLDLNGK 320

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
               + +  L     +YS   +   L    +  +           ++      +      
Sbjct: 321 TG--NPLFNLASLPAAYSAKQNTGTLNNLSVGISLNDSTGTPDGMQDFLASNYEITFTST 378

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                          V   + F     + + +   + D L    +     +   R     
Sbjct: 379 GAAPFTAVVTRLSDGVQQTVSFADNVANASTNLEGEFDGLRLSFAAADVPAVGDRFVIAP 438

Query: 218 VVYTSDGTTLFETVPRDINFE-KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
               S   T+  T P+++     + +   +     + + G+   S   +  P   +  L 
Sbjct: 439 YSAASRSLTVAFTSPKELAMARPITAEAASYNKGALTLSGLATRSVPTTPGPDVSLVFLT 498

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             +             +   +       DP+      V          +L +       E
Sbjct: 499 STQYIRTDDAYYTGSPLEAAITAGLRAGDPVY--DAAVVDYQTNATAGELYSYTPGNPIE 556

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                     +P+         K       +     +       +  +  +      +  
Sbjct: 557 ADGRTTNLPFDPTTEWGWSLTLKGVPQPGDSFTVKTNPYTQLDAANAQAMMDLRDMKLFD 616

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L +   + I  +      +      S+ +   I +  +   GVNL EE + L++ +Q
Sbjct: 617 KAPLTDGYASLIADIGTKTLGAKQTAAVSEQIAVSIEQDRTAISGVNLDEEAARLLQFQQ 676

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           +Y  + K +     +  TL+  V+
Sbjct: 677 AYQAAGKAMQVAQTLFDTLIASVQ 700


>gi|170722892|ref|YP_001750580.1| flagellar hook protein FlgE [Pseudomonas putida W619]
 gi|169760895|gb|ACA74211.1| flagellar basal body FlaE domain protein [Pseudomonas putida W619]
          Length = 451

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 117/478 (24%), Gaps = 34/478 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--VVTQRSENKNMF 63
            FN   +    A++Q      NI N +   +                  V +      + 
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61

Query: 64  DKVLHAHSSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +    S                 +         +         +    ++       
Sbjct: 62  LAAISQQFSQGDVNNTGNVLDMGIQGQGFFVLSDNGSRVYTRAGAFQADKNNFVVTSDGL 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     D   ++ +   +                +L+I          ++++  I   +
Sbjct: 122 RLQGYAADANGKIQKGVLS----------------DLQIDTSALQPKATSLIDQGINLNS 165

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-TLFETVPRDINFEKM 240
           ++     +  D    ++  +       T    +    VY S G     E   R     + 
Sbjct: 166 SATDIPLEIDDGTGAMVPNLPFDPTDETTYTKSFPTKVYDSQGNEHTMEQFYRKTGTNEW 225

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
             YT+    NP         +   S    G +  +                        +
Sbjct: 226 TMYTLVDGRNPFDPASTTPLTGTISFSSDGSVSGMTADNTGH-----------PAGASFT 274

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +                  +   +       G+  ++     Y +  + +         
Sbjct: 275 VTNNTFTMTGWVPAVEDAAGNWASNGAAGNADGMKLSMNSTTSYNTETARMSQSQDGYAT 334

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
            + +  ++     L   + +  ++      +A       L +       W E   S    
Sbjct: 335 GILSSLSIDSTGVLFASFSNQQSRAIGQVALASFANEQGLQQIGG--TRWTETFSSGLPG 392

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +          +  +      VNL +EL  LIK + +Y  + K I     ++QT+++ 
Sbjct: 393 IDEPKTGTLGSVESNALEASNVNLTQELVELIKAQSNYQANAKTISTESTIMQTIIQM 450


>gi|125972995|ref|YP_001036905.1| protein of unknown function DUF1078-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|256004792|ref|ZP_05429767.1| protein of unknown function DUF1078 domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281417206|ref|ZP_06248226.1| fagellar hook-basal body protein [Clostridium thermocellum JW20]
 gi|125713220|gb|ABN51712.1| protein of unknown function DUF1078-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|255991242|gb|EEU01349.1| protein of unknown function DUF1078 domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281408608|gb|EFB38866.1| fagellar hook-basal body protein [Clostridium thermocellum JW20]
 gi|316940769|gb|ADU74803.1| flagellar hook-basal body protein [Clostridium thermocellum DSM
           1313]
          Length = 440

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/479 (8%), Positives = 119/479 (24%), Gaps = 40/479 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +       +   I  N+ N +   +                       + +
Sbjct: 1   MMRSMFSGVSGLQAHQTKMDVIGNNVANVNTVGFKSSRVTF----------------QEV 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F + L   SS         +      +       +   T    +  D+    +       
Sbjct: 45  FSQTLKGASSPDPTTGRGGTNPMQVGLGLGVATIDTLMTRGSVQRTDNPTDLAIEGDGFF 104

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           + K    +  +  +  N     +  +   +   +          L + T   D       
Sbjct: 105 IVKGGSSDTFKFTRAGNFGIDRLGNLVTGSGLNVYG--WQSYTKLPDGTYKFDTESQIEP 162

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               + D    + ++  K +        +  +  +    + GT+        +     +S
Sbjct: 163 INLYSDDVNKNKRMIAAKATTYAIFEGNLDASYSIYSSAASGTS--SNNRFTMPVTVYDS 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              + + N  F    V                +     +   +F +Q   +    +    
Sbjct: 221 LGNSYKINISFWKTDVTGGVTTWTWQVDSGNGVTASGATGTILFDDQGQVIESSAVTPSI 280

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P                           +         Y ++ S             
Sbjct: 281 TIIPD-----------------SSVGSQNINVKLDFSRLTMYAADSSAKATNVDGYPAGS 323

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS-HDL 421
               ++     ++  Y +   +      +A  +    L +   N   ++  + S      
Sbjct: 324 LVTFSIGSDGMIMGIYSNGQQQPLGLIALASFDNPAGLEKVGENM--YIPTSNSGEFKKG 381

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                     +S        V+L +E + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 382 VKAGTEGVGTLSPGTLEMSNVDLSKEFTEMIITQRGFQANSRIITTSDEMLQELVNLKR 440


>gi|254418692|ref|ZP_05032416.1| flagellar hook-associated protein FlgK [Brevundimonas sp. BAL3]
 gi|196184869|gb|EDX79845.1| flagellar hook-associated protein FlgK [Brevundimonas sp. BAL3]
          Length = 705

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 123/393 (31%), Gaps = 6/393 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL ++ N A +    A  Q      NI N     YVR+    T +        V +   
Sbjct: 1   MSLTSIMNIATSGLQTAQAQLRVTSDNIANVHTPGYVRKTVDQTAAVTQGYGAGVDIARV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R            + ++   ++ +        +    D   +      I KL  S  +  
Sbjct: 61  RLATDRFLQAAGMSANADAARETVRYELYDQIQTRFGDPSGDGGFFADIDKLFASYATLG 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           ++ +     +  I   + +       A ++Q  R +AD  ++  +  +   L ++  +N 
Sbjct: 121 ESPTSSAARQDTIYKTQALFNEAAGIATQIQAARQEADGRLQNAVETINPLLEQIAKLNK 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I   T    D     + +  L+ ++S+ + +    R N  + + T  GTTL       +
Sbjct: 181 TIAAGTVINQDVTGAQNAQQTLIDQLSKYMDVKVEARANGGVTLRTGTGTTLVGEGNATL 240

Query: 236 NFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           +++   +   T+  + I I +           V  G+I+ L+++RD   P    +L E+ 
Sbjct: 241 SYKAAGTVDATTAFSDIMITEPNGTRWPLLDGVSSGEIRGLVELRDIDAPAAAARLGELT 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +    +              L   +  + L N L     +T               + 
Sbjct: 301 AKMADELNRAHNANSAVPAPTSLTGRNTGQSLTNALTGFTGKTTITTVNSAGVIQGSAEI 360

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                    N         L            +
Sbjct: 361 VFSGATMTVNGVAADPTTFLATVNAQLGGTATV 393



 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 112/439 (25%), Gaps = 12/439 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V+    R   +        A +        +          ++      S T       
Sbjct: 272 GVSSGEIRGLVELRDIDAPAAAARLGELTAKMADELNRAHNANSAVPAPTSLTGR--NTG 329

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            SL +     +      TV ++A  +  +                 +    ++ +   L 
Sbjct: 330 QSLTNALTGFTGKTTITTV-NSAGVIQGSAEIVFSGATMTVNGVAADPTTFLATVNAQLG 388

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
               V              +      D          G S     N+ +   T       
Sbjct: 389 GTATVGFFNGQLRIEGQAGNGIAIADDATTPSSKGGRGFSHWFGLNDLVSTKTPTFYETG 448

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            ++     F+   S T    S        V  +        G++  L  + D V  + + 
Sbjct: 449 LSLTSQHGFDAGESLTFRIGSESGARLRDVTVAVPAGTGTMGEL--LSALNDPVAGVGRF 506

Query: 289 QLDEMARVLIGSFSEKDPIAG------NSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
               +      SF   D  A       +        ++              +    V  
Sbjct: 507 GAFSLNASGALSFKAYDASATTMSVVKDGTTQDPSGVSMSQLFGLGGTGATRAGAYSVRS 566

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNVTLL 401
             + +P+ L                            D+  KN  F    G      TL 
Sbjct: 567 DIQQDPAKLALAQLNLSAAAGTPALSKNDGRGGLLLADAGKKNVNFASAGGNSGGTKTLS 626

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
            YA +  G +    S +      +  +        ++  GVN+ EEL  +   +Q+YN S
Sbjct: 627 SYAADFAGDIGGKASAAKTRSETATALSQEADSRRASAEGVNMDEELVNMTTFQQAYNAS 686

Query: 462 NKLIMFTDKMLQTLLEGVK 480
            +LI  +  M  TL+  +K
Sbjct: 687 ARLIQASKDMYDTLIGMLK 705


>gi|90422997|ref|YP_531367.1| flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
 gi|90105011|gb|ABD87048.1| Flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
          Length = 626

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 136/427 (31%), Gaps = 19/427 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           MSL    + A             +  N+ NA+   Y+R+               V +   
Sbjct: 1   MSLGDALSIAMAGLRANQAAMTLVSSNVANAETPGYIRKSVDQVTTNTGSMGSGVNINGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             E  +     L   +S  G   L   F    + +  +   + +     + L  ++++  
Sbjct: 61  NRELDSFVQTQLRTETSGAGYASLKSDFLQQLQGLYGNPDSSGTLEDAFNALTTAVQALG 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         VI+ A+ +    N  +  +Q +R  A+  I+  +SN    + ++  +N+
Sbjct: 121 TSPDSQSARIGVINAAQTIAGQLNAMSNGIQTLRGAAETGIKDAVSNANTLMKQIADINN 180

Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            ++                LDQRD  + ++S+++ I       N + V+T  G  L    
Sbjct: 181 KLQTNPLGGTSTDSSTAALLDQRDRYITQLSQLMDIRVTTNGANQVTVFTGAGVQLVGNE 240

Query: 232 PRDINFEKMNSYTVTSESNP----------IFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
              ++F    + T  +  N                   S N  S++  G+I A +++RD 
Sbjct: 241 AATLSFNAQGTVTPATTWNADASKSSLGSVTVSYSNGGSINLTSSIKSGEIAAYIEVRDK 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
           ++   QNQLD+ A  L  S S+K          P       I          +  T+   
Sbjct: 301 IMVEAQNQLDQFAATLSSSLSDKTTPGTVITPAPAPQAGINIDTSGMMSGNVMHVTVTDA 360

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                    +      S   L N         ++                A   +N+   
Sbjct: 361 ITGTQRNVSIMRVDDPSVLPLSNAATNDPNDLVVGIDFSHPATVIAQLNAALNPSNLYFT 420

Query: 402 EYARNSI 408
             A +  
Sbjct: 421 GSATSIN 427



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/442 (11%), Positives = 122/442 (27%), Gaps = 18/442 (4%)

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
              +  S    + D+     +       +  +     ++            +  + L  +
Sbjct: 188 GGTSTDSSTAALLDQRDRYITQLSQLMDIRVTTNGANQVTVFTGAGVQLVGNEAATLSFN 247

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +      +      +        V   N  +  +       +    +E+ +       +
Sbjct: 248 AQGTVTPATTWNADASKSSLGSVTVSYSNGGSINLTSSIKSGEIAAYIEVRDK----IMV 303

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
              N   +F         D      V+    +   GI+          V     T     
Sbjct: 304 EAQNQLDQFAATLSSSLSDKTTPGTVITPAPAPQAGINIDTSGMMSGNVMHVTVTDAITG 363

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
             R+++  +++  +V   SN    D   +      + P   I  L    +     F    
Sbjct: 364 TQRNVSIMRVDDPSVLPLSNAATNDPNDLVVGIDFSHPATVIAQLNAALNPSNLYFTGSA 423

Query: 291 DEMA--------RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
             +          V   S +        +   P + +        +         I    
Sbjct: 424 TSINVLNNAGFSTVTAASVTTTQAPTNLTSGSPEVALFTDNGAAYSGSISVSGNQITGLA 483

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----- 397
           Q  S  + L    S    +       +G     +       K+           +     
Sbjct: 484 QRLSVNNGLVADPSRLVVYNTTPLTASGDSTRADFITKQLTKSTYSYSPQTGVGSSSAPY 543

Query: 398 -VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             TLL Y +            +  +     VV N + + +S+  GVN+ EE++ L+ ++ 
Sbjct: 544 KGTLLSYMQQFTAQQGAAAQTAAQVSDGQTVVLNTLQKKFSDVSGVNMDEEMAHLLSLQN 603

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
           +Y+ + +++   ++M QTL++ 
Sbjct: 604 AYSANARVMSTVNQMYQTLMQA 625


>gi|294675564|ref|YP_003576179.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003]
 gi|294474384|gb|ADE83772.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003]
          Length = 452

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/493 (10%), Positives = 128/493 (25%), Gaps = 54/493 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53
           MS+ +  N         + + A+I  NI N+    Y R                   +  
Sbjct: 1   MSISSSLNAGVAGLAANATRLATISDNIANSGTYGYKRATADFESMVLTQARSSGTYSAG 60

Query: 54  TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP--THYISKLRD 109
             R+ +  + D+   L   S+A+      + F  +    +  +   + P           
Sbjct: 61  GVRASSGRLIDQRGSLIGTSNAMDIAISGRGFLPVANTSALANGLGDQPLTMTSTGSFHT 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +   +  S  +L          +  N   +   +Q +  +A++      + +   ++ 
Sbjct: 121 DKDGVLRTDSGLVLLGWAALADGTIPVNARDTVTGLQPVVINANQTAGDPTTVMNWGINL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLF 228
                               F +  +    ++S    I      + N   +   D  T  
Sbjct: 181 PASETADTAGGETLTSSIEYFGNLGNSNTLQVSFTPTIPAAGDPDSNQWTMTIRDSATTT 240

Query: 229 ETVPRDINFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
           +     +      +    +   N   +  V           +G +        ++    Q
Sbjct: 241 DPYGLGVGVVGQYTLDFDNTGTNGGTLSNVTTIQGPAWDSTEGTLNFTDASGFALADGLQ 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +    + +                                               Q  S+
Sbjct: 301 DITITIGK---------------------------------------QGDTNGLTQLASD 321

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +        S         +     +   Y   F +     P+  ++    L       
Sbjct: 322 FAPTSINKDGSPVGNLTSVEIDENGFIKATYDTGFIRTVYQVPLVDVSNINGLTALDNQ- 380

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +   + S S  L          +         V++ +EL+ LI+ +++Y+ + K+I  
Sbjct: 381 -TFQVSSTSGSFYLWDAGDGPTGAVEGYAREGSAVDVAQELTNLIQTQRAYSSNAKVIQT 439

Query: 468 TDKMLQTLLEGVK 480
            D+MLQ      +
Sbjct: 440 VDEMLQETTNIKR 452


>gi|206889889|ref|YP_002248123.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741827|gb|ACI20884.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 434

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/482 (9%), Positives = 103/482 (21%), Gaps = 52/482 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSE 58
           +L       +  N      + I  NI NA+   +           + +    + +     
Sbjct: 1   MLTSLFTGISGLNANGLALSVIGDNIANANTVGFKASRANFADILSQTLGGASAMQVGRG 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
              +  + L    +       L                  +      + R + + Y  + 
Sbjct: 61  TMIIDIQKLFTQGTLETTSNPLDLAIEGDGFFVVQQPNGPTYYTRAGQFRVNKDGYIVDP 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +  +L    +D    V                 A   I  +++                 
Sbjct: 121 NGYLLQAYQMDVNGNVTGAIGNVYLAGLMSDPSATDLITTQVNL---------------- 164

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
                                             +       +     +  T        
Sbjct: 165 ------------------------------DSREDTTTWSFTSGSTLPVAGTYNYSTAIT 194

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +S          F      +                   D      Q           
Sbjct: 195 IYDSQGNPHLVYTYFCKTAANTWEAHVVYNNSATGTNYVEVDFDSGTTQPVTIAFDSNGA 254

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            S           +       A           Q +   +  + QY S+ + +    +  
Sbjct: 255 LSDVYVTTPHTPPDPTFRPTAALDFSSWGVTSPQNVDIDLNNSTQYGSSNAVVFQNQNGY 314

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                    +     +   + +   K      +A       L +   N   +LE   S  
Sbjct: 315 SAGNLIAVTVDQDGVISGVFTNGQVKKVAQVVLAKFVAAHNLTKVGNNL--YLESYASGG 372

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   V    +  +      V+L EE   +I  +++Y  + ++I  TD ML  L+  
Sbjct: 373 PTYGAPGTVGVGKVYANSLEASNVDLAEEFIRMIAAQRAYQANVRVITTTDNMLNELMNI 432

Query: 479 VK 480
           V+
Sbjct: 433 VR 434


>gi|149927804|ref|ZP_01916055.1| Flagellar hook-associated protein [Limnobacter sp. MED105]
 gi|149823426|gb|EDM82657.1| Flagellar hook-associated protein [Limnobacter sp. MED105]
          Length = 576

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 128/343 (37%), Gaps = 19/343 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS  +V+  A +  N A    ++   NI N++   + R+  +               + V
Sbjct: 1   MS-NSVYGIALSGLNAARAGLSTTSHNIANSNTVGFNRQQVIQQSRPSTGSDIGYIGQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + + +    +  +      +S            A  + M ADD      +  +S    +
Sbjct: 60  DIASVQRVYSDFINSQEQKATSDAAFYNAKAQQIARVDAMIADDAS--GLSSALSIFFGA 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            ++ S N ++    +  + +AE +   FN     + ++R+  + ++   +  L    S++
Sbjct: 118 AQTLSTNPADLAARQNYLSSAETLSSRFNGLNTVMDELRSATNLKVRDTVEQLNNATSQI 177

Query: 171 TVVNDAIKFK---TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N+ I      T++    +D +D+RD L+ ++SE +  + +   +    ++ ++G +L
Sbjct: 178 AALNNQIVTALNQTSNGGPPNDLMDRRDKLILELSEQVQTTRVDMADGSTNLFLANGQSL 237

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVS---SNQGSAVPKGKIKALLQIRDSVVP 284
                +     +++     +    +  +        +    ++  G +   L  R+  + 
Sbjct: 238 VIGTTQFKVQTQVDPQDPQNLLVGMTTNVNGQDRLLAFDSGSLGNGALAGFLSFREEELT 297

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            +QN +  +A  +  + ++      + +N P   +        
Sbjct: 298 EYQNTIGLLAARIGQTVNDIQTAGVDLDNNPASALFSFGSSGS 340



 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/416 (11%), Positives = 124/416 (29%), Gaps = 7/416 (1%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +++ +A S        + +           +   +     I +L + +++   ++++  
Sbjct: 167 VEQLNNATSQIAALNNQIVTALNQTSNGGPPNDLMDRRDKLILELSEQVQTTRVDMAD-G 225

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                + N + +V        + Q    D    +    +N+      L   + ++     
Sbjct: 226 STNLFLANGQSLVIGTTQFKVQTQVDPQDPQNLLVGMTTNVNGQDRLLAFDSGSLGNGAL 285

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +      FL  R+  L +    IG+           + T+             +F    S
Sbjct: 286 AG-----FLSFREEELTEYQNTIGLLAARIGQTVNDIQTAGVDLDNNPASALFSFGSSGS 340

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +          ++   V+  Q +       K      +  +   Q +  E+        +
Sbjct: 341 FVDDISRVVPNVNNSTVNPTQVTLRGLDLSKLGPAEYEVQIVGSQPRYREVGSDGPFVPA 400

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                         +  A       N       +   + P   +  +  R       +  
Sbjct: 401 SLVTDPSGDYYEFAILQAHLCSFSLNNATPQEGDRFVLMPVREAALNM-RTAIDRPSEVA 459

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        +  N    +  +N      +  +  V++ +     +  +     + +   
Sbjct: 460 ASSAVNPSIGNNENILAVAALQNSRTLFQSNNSAGVSISDGFNQLVSRVGNKTREFNLAA 519

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              + V N +++S     GVN+ EE + LIK +Q+Y  S ++I  + ++   +L  
Sbjct: 520 ESRETVLNQVADSRDALQGVNMDEEAANLIKFQQAYQASGRVISLSKELFDQILSM 575


>gi|16125152|ref|NP_419716.1| flagellar hook-associated protein FlaN [Caulobacter crescentus
           CB15]
 gi|221233880|ref|YP_002516316.1| flagellar hook-associated protein FlaN [Caulobacter crescentus
           NA1000]
 gi|13422164|gb|AAK22884.1| flagellar hook-associated protein FlaN, putative [Caulobacter
           crescentus CB15]
 gi|220963052|gb|ACL94408.1| flagellar hook-associated protein FlaN [Caulobacter crescentus
           NA1000]
          Length = 703

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 131/432 (30%), Gaps = 15/432 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL A+ + A +    A         NI N +   YVR+    +          V +   
Sbjct: 1   MSLNAIMSTATSGMMAAQTGLRVTSDNIANVNTTGYVRKTVSQSNLLSNGMGVGVNIDAI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +              +S  G+  ++ S     + +  D     S    +  +  +  S  
Sbjct: 61  KRATDQFLQSASLNAASESGRASIVASTLNSAQQLFGDPSGETSFFTVLDDVYAAFSSAQ 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +L    +   ++ +   +     + K+  DAD  I  ++  +   LS++  +N 
Sbjct: 121 DDPSSSLLRTQALTRLDDFLSGSSRITASLSKLGKDADTRIAADVGRVNDLLSQIDALNT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  DA    + +  L+ ++S+++ +    R    +VV +++G  L       +
Sbjct: 181 DITRAKVAGADATGAENVQSSLVDELSKLMNVQISPRTLGGIVVRSTEGLNLAGDGAAKV 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++   + T              V  N       G+I+ L+ +R+  +    +QL E   
Sbjct: 241 TYQTSATATGFLTVQLANGSDYPVPLNI----SSGEIRGLMDVRNIDLVNLSDQLGEFTS 296

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +        S       +      LD +                ++    R   
Sbjct: 297 RATEEINR--AANAASSVPAPTSLTGRNTGLDAQAALTGFTGKTTIALTNASGVIQRRID 354

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                    V   AG      ++    N        AG +        + N +G L    
Sbjct: 355 IDFDAGTMTVNGAAGPAFTPANFLAQLNTALGGQGAAGFSNGA----LSINGVGGLGVAI 410

Query: 416 SDSHDLHMKSQV 427
           +D          
Sbjct: 411 ADDATTPSSKTG 422



 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/441 (11%), Positives = 124/441 (28%), Gaps = 17/441 (3%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
            P N++    R         +++                      ++      S T    
Sbjct: 264 VPLNISSGEIRGLMDVRNIDLVNLSDQLGEFTSRATEEINRAANAASSVPAPTSLTGR-- 321

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                L++ +            + NA  V+Q       +   +    +       +    
Sbjct: 322 --NTGLDAQAALTGFTGKTTIALTNASGVIQRRIDIDFDAGTMT--VNGAAGPAFTPANF 377

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                T +        ++   + + +    V +   +      T    ++   +     T
Sbjct: 378 LAQLNTALGGQGAAGFSNGALSINGVGGLGVAIADDATTPSSKTGKGFSHYFGLNDIVRT 437

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIF-IDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           + +      +    ++ +T    +  +  ++G  +     +    G ++ ++   +S   
Sbjct: 438 SGYSPYETGLTSADLHGFTTGQMTIRLTDVEGGRIRDIPFTPPLGGTMQNMIDALNSRAS 497

Query: 285 --------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                       +          +      +A ++E   G   A  +  +         E
Sbjct: 498 GVGLYGQFSMNAKGQVSFTSNTNTPVTMSIVADSTERGAGGPSASQLFGIGPAERSTRGE 557

Query: 337 TICVNPQYRSNPSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
              +N     NP  L      +++    N     G         ++      F       
Sbjct: 558 KFFLNTAMDQNPKLLPFAKLDLTQAVGGNAALAIGDGRGALALANAGESTATFGVAGSAA 617

Query: 396 T-NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           +  +T+  YA +  G + +  + +      +  V + +     +  GVNL EEL  L   
Sbjct: 618 SVTMTVARYAADFGGSIARKAATAESRKEAAAAVSSEVDSQRQSEEGVNLDEELINLTTY 677

Query: 455 EQSYNISNKLIMFTDKMLQTL 475
           +Q++N S +LI  T  M   L
Sbjct: 678 QQAFNASARLIQATKDMFDVL 698


>gi|254230134|ref|ZP_04923529.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
 gi|151937327|gb|EDN56190.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
          Length = 660

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 55/448 (12%), Positives = 139/448 (31%), Gaps = 20/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 17  SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 76

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S+    +   Q    +   M +           +++  D++++
Sbjct: 77  NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 135

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  V
Sbjct: 136 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDV 195

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 196 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 252

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + +   S    GKI ALL++RD  +P  Q+++  
Sbjct: 253 ASQL-KMIDGYPDVHQRRLAMVEGDGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 310

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A       ++      +     G  +   +        +  +               + 
Sbjct: 311 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDS-QADVAVYIDDIS 369

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++    +           + +++     + G+   +     A   +    
Sbjct: 370 AIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAGERVLLRP 429

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
                +      +      I+       
Sbjct: 430 TRSGAAIIKMETNDA--KAIAAQSYEAS 455



 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 113/364 (31%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174
            + D    +   F+    ++Q    D + +I  ++ +++   L               V 
Sbjct: 303 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 362

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   +A K   +      D       +   +S  +  ++   V       + E +   
Sbjct: 363 VYIDDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAG 422

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + +  +       D   +++    A      +   + +       +     + 
Sbjct: 423 ERVLLRPTRSGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 481

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   +  +   + ++  +     +    L +G
Sbjct: 482 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 541

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 542 ALMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 595

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 596 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 655

Query: 475 LLEG 478
           +L+ 
Sbjct: 656 ILQL 659


>gi|254785378|ref|YP_003072807.1| flagellar hook-associated protein FlgK [Teredinibacter turnerae
           T7901]
 gi|237685158|gb|ACR12422.1| flagellar hook-associated protein FlgK [Teredinibacter turnerae
           T7901]
          Length = 1060

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 119/370 (32%), Gaps = 16/370 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
              +   +      A    ++   NI NA  + Y R+      +               +
Sbjct: 2   TSNLLGISITGLRAAQASLSTTGHNISNAGVEGYSRQRVNIETNPATFNGSHYIGSGANI 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   +   + L   S+      +   +    + + AD   +            +++
Sbjct: 62  QEIERFANDFVSEQLRQDSALAADMNIYYDYVRQLDNLLADT--STGLASGFESFFAAMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   + +     + ++  +E +   FNT     Q I  + D+ ++  ++ +   ++ +  
Sbjct: 120 NGQDDPTSIPARQLILSESENLADRFNTLYDRFQTIENNVDEALKAAVAQVNALVANIAE 179

Query: 173 VNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            N  I   TA  +    +D LD+RD  L++++E++ I T     N + V    G  L   
Sbjct: 180 FNLNIADATAIGNGAPPNDLLDKRDEALRQLAELVPIQTYEEGLNQINVVFGSGQNLVVG 239

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   +                    S      V  G+I  LL+ RD  +    N+ 
Sbjct: 240 AKARELTLQPG--DDNYARLDAVFKSEQGSEVVTDLVQGGEIGGLLRFRDETLQNVFNEF 297

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A V+  SF++        EN  G    + + D      + I  +    P  R     
Sbjct: 298 GRIALVMADSFNQAHKQGLTLENNFGENFFNDVNDPQIAARRVIGNSNNAMPNDRQMRLN 357

Query: 351 LRDGGSVSKK 360
           + D   ++  
Sbjct: 358 IADSSQLTTS 367



 Score = 87.4 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/437 (10%), Positives = 111/437 (25%), Gaps = 3/437 (0%)

Query: 41   TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                   +   V    ++N ++  ++ HA    I  Q      +   +   A    N   
Sbjct: 625  AELNSQLQGSGVTAYLADNGSLAFRLDHAGYGDITLQNYASDPDGNGDNAPAGQASNLLG 684

Query: 101  THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
             +       ++     N +      T    AE +             +           +
Sbjct: 685  FNIEGATFTTVGGI--NGASGTGFMTNGYPAEAITITTAAEMAGGTPLTQSLFTHQNGSV 742

Query: 161  SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
              L   L+ +  V+          +           L    S+++   T    N  +   
Sbjct: 743  KELASALNNIAGVSANAFNYMEISNLKLTQAAPL-QLNINGSDLVEYETDPSGNPVLADA 801

Query: 221  TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
              D  T  +     I         +++           ++      V   +   L     
Sbjct: 802  VPDPQTDSDAFNSYIADRINADPQLSAAGIYAQAAIDPITGQAELRVHSSEGDDLQFTLT 861

Query: 281  SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            +      +  D     +  + +        +              L     + +      
Sbjct: 862  AAAGESVDISDGDNPNIALTSAGNGIGTAMTVGGRLDVTLAEGMSLGTFPPESMIFGDTR 921

Query: 341  NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
               +  +                +   L    D  +   ++ +   +           +L
Sbjct: 922  VADFAKSAYVGIQAELAGIPDTGDTFTLDFNWDAASDSRNAMDLVNLATGKLVGGGVASL 981

Query: 401  LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             E     +  +  + + +      ++ V +  ++   +  GVNL EE + LI+ EQ Y+ 
Sbjct: 982  SESYGALVESVGIDAAAAKINAEAAEQVLSQTTQMRDSLSGVNLDEEAANLIRFEQLYSA 1041

Query: 461  SNKLIMFTDKMLQTLLE 477
            + ++I     +   L+ 
Sbjct: 1042 NTQVISVARDLFDRLIN 1058


>gi|119385423|ref|YP_916479.1| hypothetical protein Pden_2696 [Paracoccus denitrificans PD1222]
 gi|119375190|gb|ABL70783.1| protein of unknown function DUF1078 domain protein [Paracoccus
           denitrificans PD1222]
          Length = 446

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/492 (11%), Positives = 119/492 (24%), Gaps = 58/492 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV 53
           MS+ +  +   +     S + A+I  NI N+    Y R DT                T  
Sbjct: 1   MSISSALSAGVSGLAANSTRLATISDNIANSGTYGYKRVDTSFESMVINQGRGGGLYTAN 60

Query: 54  TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS---PTHYISKLR 108
             R+    + D+   L   S  +      +    +    S D     S           R
Sbjct: 61  GVRAATSRIVDERGNLVPTSHPLDIAISGRGMLPVIYSASLDSGTATSSDLVMTRTGSFR 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
              + Y +  S  +L     ++   +      S   +Q I     +      + +     
Sbjct: 121 TDDQGYLRTDSGLVLMGWPANSDGTIPSQPRDSTTGLQPIMISPSQTAADPTTRIN---- 176

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
               +   +    A         +        +     ++   R +              
Sbjct: 177 ----LRVNLPAGEAVGGATGTEREMEVEYFGNLGNSERMTVTFRPDITGAAGAQTNRWTM 232

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           E     I  +       +       + G+       S    G +  +             
Sbjct: 233 EIRDSAIINDPATPADES-------LIGIYTLEFDNSQAGGGTLANVTTAAGGAYSAATG 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L                                  +    +  G         Q  ++ 
Sbjct: 286 LL-----------------------------TVPGANGPMTINLGRYGDNQGITQLSASF 316

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S      + S         +     L   Y   F +     P+  +     L+       
Sbjct: 317 SPTNVSKNGSPVGNLTALEIDENGYLQATYDTGFTRTLYQVPLVDVPNPNGLIAMDNQ-- 374

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +    RS +  L          ++         ++  EL+ LI+ +++Y  + K+I   
Sbjct: 375 TYKISPRSGAFYLWNAGDGPTGAVAGYAREASTTDVAAELTDLIQTQRAYTSNAKVIQTV 434

Query: 469 DKMLQTLLEGVK 480
           D+MLQ      +
Sbjct: 435 DEMLQETANLKR 446


>gi|304310787|ref|YP_003810385.1| Flagellar basal body FlaE [gamma proteobacterium HdN1]
 gi|301796520|emb|CBL44728.1| Flagellar basal body FlaE [gamma proteobacterium HdN1]
          Length = 447

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 116/483 (24%), Gaps = 48/483 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---------- 55
            FN A +    A         NI N     + +               +           
Sbjct: 2   SFNIAISGLKAAQSDLEVTSNNIANVATTGFKKSRAEFGDIYATGAFGSTKTAIGSGVLL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           ++ ++      ++   + +      + F  +   + + +               + +   
Sbjct: 62  QAVSQQFNQGNMNFTQNTLDFGVSGEGFFVMSPNIGSSE----RIYTRAGAFGVNADGNV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S+ +L    ++    V                     I L++ +         +V  
Sbjct: 118 VNSSDQLLQVFPVNEDGTVTS-------------TALSSTIPLKLPDAAGTPKATELVTM 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +     +        D RD      S  + +   +   +   +Y               
Sbjct: 165 GVNLPADAAALDPALFDPRDAKTYTASTSVNVYDSLGKAHVAALYY-------------- 210

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 S    +      IDG  V+ + G         A     +       + +    +
Sbjct: 211 -VRDSTSVVPNTWQMFTMIDGERVALDDGGTPAAPLNSARFSFGNDGTLNIGSMVPATFQ 269

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L           GN+   P      G  +  + L     +      Q+ S  +      
Sbjct: 270 TLGLGVD----AGGNAAVPPAPGPLTGWLNGPDPLQVIEFDITAGTKQFASPFTLNTLTQ 325

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     +   Y +    +     +A       L +       W E + 
Sbjct: 326 DGFSIGRLTGIEVDDSGLVRAAYSNGQTVSVGKVALARFPNPQGLSQIGN--TSWKETSA 383

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            +  I         V+L  EL  LI  ++++  + K I  T+ +   +
Sbjct: 384 SGEALAGEAGTSSYGLIRAGALEVSNVDLTTELVGLITAQRNFQANAKSIETTNTVTNAI 443

Query: 476 LEG 478
           +  
Sbjct: 444 INL 446


>gi|88704300|ref|ZP_01102014.1| flagellar hook-associated protein 1 FlgK [Congregibacter litoralis
           KT71]
 gi|88701351|gb|EAQ98456.1| flagellar hook-associated protein 1 FlgK [Congregibacter litoralis
           KT71]
          Length = 627

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 145/446 (32%), Gaps = 26/446 (5%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVL 67
            +  ++  +NI N + + + R+                    V +              +
Sbjct: 4   QRAISTTGQNIANVNTEGFSRQRVEFAALEPQLSGSGFVGSGVGIAAITRSYDQYLAGDV 63

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              +S+      L       + + AD          + +   +++  + N       + +
Sbjct: 64  LDRTSSAAGASALGDLSGRVDDILADPA--TGLGPVLDEFFGAVQDVANNPGSLPERQVL 121

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT--ASKH 185
           +  AE +   F         +  +A+  I+  +  +  F + +  +ND I  +T  +   
Sbjct: 122 LGQAEVLADRFQYLNDRFAGLDQEANIRIDNSVREINAFAAGIADLNDRIVSETVRSGGQ 181

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             +D LD RD LL ++SE+IG++T+ + +  + V   +G  L             + + V
Sbjct: 182 PPNDLLDARDQLLNRLSEVIGVTTVDQGDGAVNVLVGNGQALVVGSSVTELETFTDPFDV 241

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T  +    I G+ V ++ G  +  G++ A+L  R +V+   ++ L  +A  L  +F+++ 
Sbjct: 242 TRVNVG--ISGLAVQTDIGRFLSGGELGAVLDFRGNVLDGARSDLGLIATGLTATFNDQQ 299

Query: 306 PIAGNSENVPGLFIADG-----IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +  +     G            + + N     ++  I        +   L   G  +  
Sbjct: 300 ALGLDLNGNFGGDFFRPLEPTISESISNTGTGAVTAVITDPTNLSGDEYQLSFDG-ANYT 358

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS----IGWLEKNRS 416
                 N +          D  +      P AG +  +  +    +     I       +
Sbjct: 359 LTNTTTNASTTGPGPAFSIDGIDITVSGTPAAGDDFLIAPVAQGASLFDVAISDPRAFAA 418

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGV 442
            S      S         +      V
Sbjct: 419 ASPLRSSTSLANAGSGQLNDLAVSDV 444



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/424 (10%), Positives = 111/424 (26%), Gaps = 17/424 (4%)

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
           + + Q     +                    +      +  +   +            + 
Sbjct: 204 TTVDQGDGAVNVLVGNGQALVVGSSVTELETFTDPFDVTRVNVGISGLAVQTDIGRFLSG 263

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
            E+    +     +   R+D         +      +    +N           +     
Sbjct: 264 GELGAVLDFRGNVLDGARSDLGLIATGLTATFNDQQALGLDLNGNFGGDFFRPLEPTISE 323

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
              +     ++ +I   T +  +   + +  DG     T               + +   
Sbjct: 324 SISNTGTGAVTAVITDPTNLSGDEYQLSF--DGANYTLTNTTTNASTTGPGPAFSIDGID 381

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQI-----RDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           I + G   + +     P  +  +L  +     R             +A    G  ++   
Sbjct: 382 ITVSGTPAAGDDFLIAPVAQGASLFDVAISDPRAFAAASPLRSSTSLANAGSGQLNDLAV 441

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF----- 361
               S  + G  +     D       G   T         +PS   +G  V+        
Sbjct: 442 SDVASLPLAGNIVLTFNSDALGAGVPGFDVTGIAGGPIAYDPSTDANGLPVTLGDIEFTL 501

Query: 362 -----LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +  ++A   D      ++     +           +  +   + +  +  +  
Sbjct: 502 QGIPEDGDSFSIANNVDGSGDNRNALALAALQTERTLNGGTASYQDAYASLLADVAVSTR 561

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +         +      + ++  GVNL EE + LI+ +Q+Y  + ++I   D++ QTLL
Sbjct: 562 QAKSAADTEGTLLEQARSALNSAQGVNLDEEAANLIRYQQAYQAAAQVIAVADEVFQTLL 621

Query: 477 EGVK 480
              +
Sbjct: 622 NATR 625


>gi|91225879|ref|ZP_01260848.1| flagellar hook-associated protein K [Vibrio alginolyticus 12G01]
 gi|91189529|gb|EAS75805.1| flagellar hook-associated protein K [Vibrio alginolyticus 12G01]
          Length = 646

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 119/333 (35%), Gaps = 17/333 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRLFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S+    +   Q    +   M +           +++  D++++
Sbjct: 63  NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  +
Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + +   S    GKI ALL++RD  +P  Q+++  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGNGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           +A       ++      +     G  +   +  
Sbjct: 297 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNS 329



 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 115/364 (31%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174
            + D    +   F+    ++Q    D + +I  ++ +++   L               V 
Sbjct: 289 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 348

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I+  +A K   +      D       +   +S  + +++   V       + E +   
Sbjct: 349 VYIEDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDHSDSSFVLDGMKVQIGEGLAAG 408

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + +  +       D   +++    A      +   + +       +     + 
Sbjct: 409 ERVLLRPTRSGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 467

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   +  +   + ++  +     +    L +G
Sbjct: 468 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 527

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 528 ALMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 581

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 582 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641

Query: 475 LLEG 478
           +L+ 
Sbjct: 642 ILQL 645


>gi|88813660|ref|ZP_01128889.1| hypothetical protein NB231_05371 [Nitrococcus mobilis Nb-231]
 gi|88789078|gb|EAR20216.1| hypothetical protein NB231_05371 [Nitrococcus mobilis Nb-231]
          Length = 652

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 138/404 (34%), Gaps = 17/404 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  +F+ + +      +   +   NI N +   Y R+ T  T               V  
Sbjct: 1   MGDLFDNSISGLLAFQRAINTTAHNIANVNTAGYSRQRTELTARAPTEFGNGFVGNGVQA 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +            +   S+   +   L  +    + + AD       T  +    D ++
Sbjct: 61  ASTNRLFNQTRQVAVQTSSAEYQRLETLAEYSGRIDSLLADQTA--GLTPALQSFFDGVQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + S     +T++  +E +V   +    ++ ++  D +++++ ++  +    + +  
Sbjct: 119 ELANDPSSSPARQTLLSASENLVARLHFLDGQLAQLGTDIEQQLQAQVEQINGLANGIAE 178

Query: 173 VNDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N  I     +A     +D LDQRD L+ ++S ++    + + +  + V+  +G TL   
Sbjct: 179 LNQTIVAMQASAGGQPPNDLLDQRDQLMLELSALVATEAVPQGDGSINVFVGNGQTLVSG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +           T     +         N  +++  G +  LL  R   +   +++L
Sbjct: 239 FTANELQITPAHADGTIPEIGLARRNGAP-VNITASLQGGSLGGLLDFRRETLDPTRDRL 297

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NP 348
             +A  +  + + ++ +  +  N P   +   I  +          T        +  +P
Sbjct: 298 GLIASGIAEAANNQNRLGMHYANGPAGQLGGAIFQVAPPQVVPSQGTAGTAAAGLARLDP 357

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
           S + D    + +  ++  N A             N     D ++
Sbjct: 358 SRVGDLTGANYRLSYDGSNWALSNLSSATTTPISNIPQDIDGLS 401



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 90/396 (22%), Gaps = 23/396 (5%)

Query: 77  QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
           Q L+  F A +  ++        P   +++   +  + + +L    LG  +    E +  
Sbjct: 233 QTLVSGFTANELQITPAHADGTIPEIGLARRNGAPVNITASLQGGSLGGLLDFRRETLDP 292

Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
             +        I   A+ +  L +        +L      +                  +
Sbjct: 293 TRDRLGLIASGIAEAANNQNRLGMHYANGPAGQLGGAIFQVAPPQVVPSQGTAGTAAAGL 352

Query: 197 LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256
                S +  ++      N  + Y      L                 +   S  +    
Sbjct: 353 ARLDPSRVGDLT----GANYRLSYDGSNWALSNLSSATTTPISNIPQDIDGLSIDVSKIS 408

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
             VS +     P     A + +  +                  +                
Sbjct: 409 GAVSGDSFLIRPTRNGAAGIDLTITRASEIAAAAPVRVAQASDASGTPQNQGTGQIGEVQ 468

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA------- 369
           +  A  +           +          ++ +   D    S     ++  L        
Sbjct: 469 VSSAASLPLSSPFTLTFDAANNRFLVNGSTSTTVAYDPSQDSSGVTRSIPGLGGVQFTLS 528

Query: 370 ------------GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G    +    +      + +         +  +   N +  +      
Sbjct: 529 GNPADGDRFVVEGNSGALGDNHNLLQLGKLTESGLLEGGKTSFQQAYSNLVNEVGTATLR 588

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +       Q V +    +     GVNL EE + L+K
Sbjct: 589 ATTHRDAQQSVLDQAKAAREAVSGVNLDEEAANLLK 624


>gi|325274792|ref|ZP_08140821.1| flagellar hook-associated protein FlgK [Pseudomonas sp. TJI-51]
 gi|324100073|gb|EGB97890.1| flagellar hook-associated protein FlgK [Pseudomonas sp. TJI-51]
          Length = 680

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 142/404 (35%), Gaps = 15/404 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ +   +  N +    +    NI NA    Y R+ T+                  T+
Sbjct: 1   MSSLISIGLSGLNASQAALSVTSNNIANAATSGYSRQQTLQAAGPSHNIGAGFLGTGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   +S        Q      + + AD   +   +  ++    +++
Sbjct: 61  ADVRRIYSSYLDNQLQTATSLQADSATFQDQITSVDKLLAD--RDTGISSVLTAFFAAMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +    +    + ++  A+ +   FN  + ++ +  A  + +++     + +  + +  
Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLSQQNATINSQLDTMAGQVNKLTASIAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N  I   +AS +  +  LD R   +++++E++G++   R + +  VY   G +L     
Sbjct: 179 YNKQITAASASGNTPNSLLDARGEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTK 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +    +            + I+    SS+  S +  G I  LL+ R  V+    N+L  
Sbjct: 238 ANTLSVEPGV--ADKSQVGLRINYDSFSSDVTSVISGGAIGGLLRYRQDVLTPSMNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+  S + +     ++    G  +   I        + ++ +         + +   
Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIAD 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            G   +  +     +   Y    +   D  + +   DP   I+ 
Sbjct: 356 SGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNADPAPVIDG 399



 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 68/256 (26%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G+        +               N         +  +   +  G   AL+Q      
Sbjct: 425 GSITTTLTDANKLAFAGPISANAGSGNSGTGTITQPTLGEALDIYGGADTALIQQSIRDS 484

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +   D  +    G                     + +      L    +  +  +  
Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGQDNKLSIAVPMLDGSGNPILDGSGN 544

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            R+       GGS +    + +   A       +               G     +    
Sbjct: 545 PRTFSVETTIGGSPAANDSFTLSFNADGKADNRNATALLELQTKSTVNTGSGGGTSFTSA 604

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +    + +      ++ V    SES S   GVNL +E + L+K +  Y  S++
Sbjct: 605 YASLVERVGAKANQASIDTTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664

Query: 464 LIMFTDKMLQTLLEGV 479
           +I    +   TL+  +
Sbjct: 665 IIKAAQETFSTLINAL 680


>gi|5361014|gb|AAD42921.1|U12817_15 polar flagellar hook associated protein type 1 [Vibrio
           parahaemolyticus]
          Length = 658

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/448 (11%), Positives = 137/448 (30%), Gaps = 20/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 15  SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 74

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S++   +   Q    +   M +           +++  D++++
Sbjct: 75  NVRRSWDQFAVNELNLSSTSNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 133

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  +
Sbjct: 134 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERINQLALEIRDI 193

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 194 HRLMMRTP---GPHNDLMDQHEKLITELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 250

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + + +   +  GKI ALL +RD  +P   +++  
Sbjct: 251 ASQL-KMIDGYPDVHQRRLAMVEGDGIKAIKADDM-DGKIGALLDMRDKHIPQLLDEMGR 308

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A       ++      +     G  +   +        +  +               + 
Sbjct: 309 LATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNS-KADVAVYVDDIS 367

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++    +             +++     + G+   +     A   +    
Sbjct: 368 ALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAGERVLLRP 427

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
                +             I+       
Sbjct: 428 TRSGAAIIKMETKDA--KSIAAQSYEAS 453



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 111/364 (30%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-----------SNLRRFLSELTVVN 174
            ++D    +   F+    ++Q    D + +I  ++           S +    +    V 
Sbjct: 301 QLLDEMGRLATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNSKADVA 360

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +   +A K   +      D       +   +   +  ++   V       + E +   
Sbjct: 361 VYVDDISALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAG 420

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + +  +       D   +++    A      +   +         +     + 
Sbjct: 421 ERVLLRPTRSGAAIIKMETKDAKSIAAQSYEASTTFA-QGSAKFNIREAGDVKEFEVTVQ 479

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   D  +   + ++  +     +    L +G
Sbjct: 480 PPDEKHDKAWLKITDNKGNLLSDKYSYPLDKDDPLIEISVPKSHPLYKNGDATIFELTEG 539

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 540 ALLNDKFTANLVPSEGGNGNLRKMQQLQTNKM------MDGKSSTLIDVYHNLNTEVGLK 593

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 594 SATANRLASVARLEHEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 653

Query: 475 LLEG 478
           +L+ 
Sbjct: 654 ILQL 657


>gi|242277989|ref|YP_002990118.1| hypothetical protein Desal_0512 [Desulfovibrio salexigens DSM 2638]
 gi|242120883|gb|ACS78579.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 529

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/536 (9%), Positives = 115/536 (21%), Gaps = 63/536 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51
           M L        +     SQ  + I  N+ N +   +    T    S  +           
Sbjct: 1   MGLKGSMYNGISGIRAHSQAMSIIGNNLANGNTIGFKGARTSFEDSFYSAVNTGGGIGQV 60

Query: 52  --VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   S   +         S A       + F  +          + +          
Sbjct: 61  GHGVGIASIYGDFKQGPFEPSSEATNVAIGGKGFFTV-----RHPDTDGTYYTRAGNFIF 115

Query: 110 SLESYSKNLSEDILGKTVIDNA--------------------EEVVQNFNTSAREVQKIR 149
           + +    +    ++    ++                      +      +  A  V    
Sbjct: 116 NKQGVLTDPHGYVVQGWKVNPNSESGKPDIIGTPTDIKLDRFQSPPVRTSEIAMNVNLSS 175

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-- 207
              DK             +     N  I     +  +     D+             +  
Sbjct: 176 KAEDKCNVTGQPFFSLHQTWNGKNNPPIPADRYAFQNTIKTFDESGTSHDLTIYFDPVKD 235

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           ST+  +     VY    T       R IN   + + +         +         G + 
Sbjct: 236 STVTTDAAGNRVYEFIVTVPPGEDGRTINGTALKTTSAAGLLMTGTMTFNPRGEMIGMSS 295

Query: 268 ---PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                G    +  + + V     +    +        +  +       N   L       
Sbjct: 296 FSLKGGATGGMQNLNNWVPSPMSDDGKPIFTANFLGKANANLATDPDANPITLDFGLSNG 355

Query: 325 DLDNKLCQGISETIC--------------------VNPQYRSNPSFLRDGGSVSKKFLWN 364
                                               +  Y +  +      +        
Sbjct: 356 SNPPTWSTPTPADASAVGNTLANIPNFTTPKRSASYSTSYDTGNARNSQSQNGYGAGFLQ 415

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              +     +   Y +    +     +A  N    L     N         S        
Sbjct: 416 AVEVDRDGVVTGRYSNGQVLDLYVLTLANFNNQYGLRREGGNLFS--STRDSGPALTGRA 473

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  I+ +      V++ +E+  LI  ++ +  ++K I   D++L  L++  +
Sbjct: 474 GTGPLGSIASNKLEQSNVDVGDEMVKLITTQRGFQANSKAITTADQLLGELIQLKR 529


>gi|254511352|ref|ZP_05123419.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11]
 gi|221535063|gb|EEE38051.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11]
          Length = 439

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/487 (9%), Positives = 123/487 (25%), Gaps = 63/487 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M++ +  N         + + A+I  NI N+    Y R +T            + +    
Sbjct: 9   MTISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTSGQGGSYSAGGV 68

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           R+ ++ + D+   L   +++       +    ++         N          R + E 
Sbjct: 69  RTTSQRLIDQRGSLVTTNNSTDLAVRGRGMLPVRPSSQIAAGSNEMMLTTTGSFRTNEEG 128

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y    S  +L          +      +   ++ I+   ++      + +   ++     
Sbjct: 129 YLVTQSGLVLLGWRAAADGSIPSVPRDTPAALEPIQLSVNQLSGAPTTEMNLRMNLPATA 188

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
                                D      ++ + +           V      T+      
Sbjct: 189 --------------------TDAGAPGDAQPLSVEYFDNLGKSESVDIELVPTVP----- 223

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +      + T+   ++   + G    +   S    G + ++  +           +   
Sbjct: 224 AVGSSNEWTMTLRDSASGGTVIGEYTLTFTDSRTAGGTLASVTAVTGGAYDPATGSMVVN 283

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   +       +         A      D                          
Sbjct: 284 VAGGPMEINIGQLGDADGITQLSDTFAPVSITRDGS------------------------ 319

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                         +     +   Y    ++     P+A +     L     +S  +   
Sbjct: 320 -----AVGTMTSVQVDENGYVYAFYDTGVSRRMFQIPLADVPNPNGLTAL--DSQTYAPS 372

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S +  L    +     +          ++  EL+ +I+ +++Y+ S K+I   D+MLQ
Sbjct: 373 RDSGTFFLWNAGEGPTGDLVSFAREESTTDVATELTSMIQTQRAYSSSAKVIQTVDEMLQ 432

Query: 474 TLLEGVK 480
                 +
Sbjct: 433 ETTNIKR 439


>gi|311105941|ref|YP_003978794.1| flagellar hook-associated protein FlgK [Achromobacter xylosoxidans
           A8]
 gi|310760630|gb|ADP16079.1| flagellar hook-associated protein FlgK [Achromobacter xylosoxidans
           A8]
          Length = 555

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 133/406 (32%), Gaps = 18/406 (4%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSEN 59
           A    N A    A+   NI NA    Y R+  M + +             V V T     
Sbjct: 7   ALGGLNAAQAGLATTSHNINNATTVGYNRQRVMVSTAGAQATSNGYIGRGVQVDTVERSY 66

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +   K L     +  Q +   +  +    + AD          ++    S+ + +   +
Sbjct: 67  DSFLYKQLVGAQGSGAQLQTQYNQVSAINNLFAD--RTVGIAPGLTNFFTSMNAVASKPA 124

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    + ++  A  +     ++  E+Q  R   + +I   +  +  +L+ +  +N  I  
Sbjct: 125 DPAARQDLLGKANSLATQIRSAYTEMQNQRIGLNTQITTTVEQVNSYLTRIDDLNQQISL 184

Query: 180 KT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
            T  A     +D LDQRD  + ++++++G++T  + +   +   S G  L          
Sbjct: 185 ATGKAGGSPPNDLLDQRDQAVMELNQLVGVTTYEQGDKINITLASGGQALLSGNTIYPLQ 244

Query: 238 EKMNSYTVTSESNPIFIDGVVVSS----NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
              +S  V   +    +      +       + V  G +  LLQ R + + + Q+QL +M
Sbjct: 245 AVASSKDVGRTTIAYTLPAGAGKTVAVELNDTEVTGGSLGGLLQFRATSLDVMQSQLGQM 304

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  L  SF+ +     +    PG               Q  S           N    ++
Sbjct: 305 AVGLALSFNAQHKQGLDQNGNPGTDFFGIGSPQGVPNAQNKSNASISGQFTNLNNINAKE 364

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                    + V  +     + N            D   G+   ++
Sbjct: 365 YEISFDGTNYRVLRMPEGSQVYNGPATGTPGTLNLDSEMGVTLTIS 410


>gi|89068728|ref|ZP_01156114.1| flagellar hook protein FlgE, putative [Oceanicola granulosus
           HTCC2516]
 gi|89045691|gb|EAR51753.1| flagellar hook protein FlgE, putative [Oceanicola granulosus
           HTCC2516]
          Length = 432

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/484 (12%), Positives = 125/484 (25%), Gaps = 56/484 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTTISPENVTVVTQR 56
           MS+L       +     +   A+I  NI NA+   + R      T TT +P +++ V  R
Sbjct: 1   MSILGAMKTGVSGLQANAASVANISENIANANTDGFRRSFSQMVTTTTTNPSSMSGVIAR 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                     +    SA         F  + +        N                  K
Sbjct: 61  DRIDMGTPGSMRPTDSATDLALEGGGFFVVSQRPDEPLASNYML-TRAGSFTPDENGNLK 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +   L     D   +      TS  ++  +            + +         ++  
Sbjct: 120 NAAGFYLAGFPTDQNGQTGGIDRTSFGDLSTVNVLERSIQGAPTTTI--------ALSGN 171

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +  + +                  +     +      + +   +T + +      P    
Sbjct: 172 LPAQESGLATPGAPFISSAEYFNPLGGAERLELRWLPSMNKNEWTLEISGPDPNQPPYGW 231

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  +  +  +P+   G+        A      +A L I +   P            
Sbjct: 232 VTATFEDSGPNAGSPLTYQGMPNGGGANFAFNDATGQATLTIDNGNTPQVI--------- 282

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                                            L  G         Q+  + +  +    
Sbjct: 283 --------------------------------TLDLGAPGEFDGMTQFAGDYTPPQIDRD 310

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            S+        +     +   + +    +    PVA ++    L   A N   +     S
Sbjct: 311 GSEAGNLARVEIENDGTVFGFFDNGQRMSLFSLPVANVSNPEGL--VAGNGNAYKLSRAS 368

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +  L +        I         V++ EEL+ LI  +++Y+ + K++   D+ML    
Sbjct: 369 GAMTLGIAGGGGTASIYAGALEGSNVDIAEELTDLIATQRAYSTNAKVVTTADEMLDETT 428

Query: 477 EGVK 480
              +
Sbjct: 429 RIKR 432


>gi|28897559|ref|NP_797164.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260364617|ref|ZP_05777219.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           K5030]
 gi|260878278|ref|ZP_05890633.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AN-5034]
 gi|260898108|ref|ZP_05906604.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           Peru-466]
 gi|260901960|ref|ZP_05910355.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ4037]
 gi|28805771|dbj|BAC59048.1| polar flagellar hook associated protein type 1 FlgK [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308086131|gb|EFO35826.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           Peru-466]
 gi|308090129|gb|EFO39824.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AN-5034]
 gi|308106763|gb|EFO44303.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ4037]
 gi|308115094|gb|EFO52634.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           K5030]
 gi|328473447|gb|EGF44295.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           10329]
          Length = 646

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/448 (11%), Positives = 138/448 (30%), Gaps = 20/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S++   +   Q    +   M +           +++  D++++
Sbjct: 63  NVRRSWDQFAVNELNLSSTSNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  +
Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERINQLALEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLITELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + + +   +  GKI ALL +RD  +P   +++  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGDGIKAIKADDM-DGKIGALLDMRDKHIPQLLDEMGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A       ++      +     G  +   +        +  +               + 
Sbjct: 297 LATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNS-KADVAVYVDDIS 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++    +             +++     + G+   +     A   +    
Sbjct: 356 ALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAGERVLLRP 415

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
                +      +      I+       
Sbjct: 416 TRSGAAIIKMETNDA--KSIAAQSYEAS 441



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 111/364 (30%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-----------SNLRRFLSELTVVN 174
            ++D    +   F+    ++Q    D + +I  ++           S +    +    V 
Sbjct: 289 QLLDEMGRLATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNSKADVA 348

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +   +A K   +      D       +   +   +  ++   V       + E +   
Sbjct: 349 VYVDDISALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSTFVLDGMRVQIGEGLAAG 408

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + +  +       D   +++    A      +   +         +     + 
Sbjct: 409 ERVLLRPTRSGAAIIKMETNDAKSIAAQSYEASTTFA-QGSAKFNIREAGDVKEFEVTVQ 467

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   D  +   + ++  +     +    L +G
Sbjct: 468 PPDEKHDKAWLKITDNKGNLLSDKYSYPLDKDDPLIEISVPKSHPLYKNGDATIFELTEG 527

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 528 ALLNDKFTANLVPSEGGNGNLRKMQQLQTNKM------MDGKSSTLIDVYHNLNTEVGLK 581

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 582 SATANRLASVARLEHEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641

Query: 475 LLEG 478
           +L+ 
Sbjct: 642 ILQL 645


>gi|262394933|ref|YP_003286787.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
 gi|262338527|gb|ACY52322.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25]
          Length = 646

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/448 (12%), Positives = 139/448 (31%), Gaps = 20/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S+    +   Q    +   M +           +++  D++++
Sbjct: 63  NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  V
Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + +   S    GKI ALL++RD  +P  Q+++  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGDGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A       ++      +     G  +   +        +  +               + 
Sbjct: 297 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDS-QADVAVYIDDIS 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++    +           + +++     + G+   +     A   +    
Sbjct: 356 AIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAGERVLLRP 415

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
                +      +      I+       
Sbjct: 416 TRSGAAIIKMETNDA--KAIAAQSYEAS 441



 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 113/364 (31%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174
            + D    +   F+    ++Q    D + +I  ++ +++   L               V 
Sbjct: 289 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 348

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   +A K   +      D       +   +S  +  ++   V       + E +   
Sbjct: 349 VYIDDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDQSDSSFVLDGMKVQIGEGLAAG 408

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + +  +       D   +++    A      +   + +       +     + 
Sbjct: 409 ERVLLRPTRSGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 467

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   +  +   + ++  +     +    L +G
Sbjct: 468 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 527

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 528 ALMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 581

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 582 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641

Query: 475 LLEG 478
           +L+ 
Sbjct: 642 ILQL 645


>gi|170722885|ref|YP_001750573.1| flagellar hook-associated protein FlgK [Pseudomonas putida W619]
 gi|169760888|gb|ACA74204.1| flagellar hook-associated protein FlgK [Pseudomonas putida W619]
          Length = 682

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/446 (12%), Positives = 147/446 (32%), Gaps = 16/446 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N   +  + +     +   NI NAD   Y R+  +                  T+
Sbjct: 1   MASLINIGMSGLSASQSGLHTTGNNIANADVAGYSRQQNIQRAKGSLQEGQLFMGTGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L   +S             +  + +     N   T  ++    +L+
Sbjct: 61  ADVRRVYNAFLDAQLQTATSLNSDST--AYLNQVTPLNNLLSDSNTGITGALTNFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           S +   +ED   + ++ NA+ +   FN+ + + ++   + +  +    + +    S +  
Sbjct: 119 SAANKPTEDASRQLLLSNADALANRFNSLSAQFKEQNTNINGNLSSMTARINELTSSIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N+ I   +A     +D LDQR+  +++++E++G+ T+ R + ++ VY  +G +L     
Sbjct: 179 YNEQISKVSAINGQPNDLLDQRNEAVRQLNELVGVQTVER-DGNIDVYLKNGQSLVLGKT 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +    + ++         I +D    + +  +++  G++  LL+ R   +    N+L  
Sbjct: 238 TNKMSAEPSATDP--TQFAIKLDRGSTTMDITNSITGGEMGGLLRYRSETLAPAMNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+    + +     +     G  +     + D  +    +  I        N     
Sbjct: 296 IALVVSQQINSQLGQGIDKNGEFGAALFG-DINSDKAMSARSTAKIGNAGDAALNVVIRD 354

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
            G   +  +             +    D  +                     ++    + 
Sbjct: 355 TGKLSTSDYQVTFVGPTADKFQVKKLPDGTDMGTYSTNDDPAPVIDGFSIDLKSGTAAVG 414

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSN 438
            +   +   +  +++           
Sbjct: 415 DSFKITPTRNASAEIDVVLTDAKRLA 440



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 41/132 (31%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              +   GS      + V           +               G    +++ +     
Sbjct: 551 SFEMDVAGSPKNGDSFTVSLTGAGSSDNRNALSLQELQTKQTMDIGSTKGISITDAYGKL 610

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +             + V+    + +  +  GV L EE S LIK +Q Y  S+++I  
Sbjct: 611 VESVGAQAKQGQMDTQATGVILTQAAGARDSLSGVQLDEEASNLIKYQQYYTASSQIIKT 670

Query: 468 TDKMLQTLLEGV 479
              +  TL+  +
Sbjct: 671 AQDIFNTLIAAL 682


>gi|153840135|ref|ZP_01992802.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ3810]
 gi|149746243|gb|EDM57333.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus
           AQ3810]
          Length = 430

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 119/333 (35%), Gaps = 17/333 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S++   +   Q    +   M +           +++  D++++
Sbjct: 63  NVRRSWDQFAVNELNLSSTSNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKA 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  +
Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERINQLALEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLITELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + + +   +  GKI ALL +RD  +P   +++  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGDGIKAIKADDM-DGKIGALLDMRDKHIPQLLDEMGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           +A       ++      +     G  +   +  
Sbjct: 297 LATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNS 329


>gi|330502734|ref|YP_004379603.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01]
 gi|328917020|gb|AEB57851.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01]
          Length = 456

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/477 (9%), Positives = 108/477 (22%), Gaps = 27/477 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62
            FN   +    A+        NI NA    + +          +  + T    +     +
Sbjct: 2   SFNIGLSGLRAATSDLNVTGNNIANAGTAGFKQSRAEFADLYASSMLGTGKNPQGSGVLL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D     +   I   +                +                + Y  N     
Sbjct: 62  ADVAQLFNQGNINYTQNALDMAINGNGFFMTSNNGEMSYTRSGYFGTDRDGYIVN----- 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 +    +       +  +  +++D       +       +++   +N        
Sbjct: 117 ------NFGYRLQGYAADDSGNILPVQSDLRVSAGQQEPKATTTVTQRINLNSNAVRPAN 170

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVPRDINFEKMN 241
           +   A    D  D      S    I     N +     +  +           +  + +N
Sbjct: 171 AGTMAAPTFDPSDSKSFNWSTSTNIYDSQGNAHVMSQYFVKNEAPANNGWVMHVLIDGVN 230

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
               +S     +      +             A   +           LD  A       
Sbjct: 231 PRDPSSTQPFSYAVNYDAAGQL----------ADPALTPLASTPPNPALDAPAIPTGTPN 280

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                   +        +  G    +    +  +  +  + QY ++              
Sbjct: 281 GIFALAEADWVPAEKDPVNPGTMVANGADSEAFTFDMRGSTQYAASFGVNAVSQDGYTTG 340

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +     +   Y +  +K      +A       L    +    W++   S    +
Sbjct: 341 QLAGIEVDDTGIIFARYTNGQSKVQGQVLLANFANVQGLSPVGK--TAWVQSFESGEPVI 398

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +         V L ++L  LI  +++Y  + K I     + QT++  
Sbjct: 399 GTPRSSTLGALQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINL 455


>gi|88858137|ref|ZP_01132779.1| flagellar hook-associated protein [Pseudoalteromonas tunicata D2]
 gi|88819754|gb|EAR29567.1| flagellar hook-associated protein [Pseudoalteromonas tunicata D2]
          Length = 681

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 124/361 (34%), Gaps = 18/361 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   +     +    A +   +   NI N +   Y R+      +              
Sbjct: 1   MS-FGILGTGVSGLAAAQKGLDTTGHNIANVNTTGYNRQTVEQISTVGIPFGGVFLGNGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +            +  + S         +  +  +   A+   +   T  I +  ++
Sbjct: 60  QVSSISRAFNEFSYTEVIYNKSQFNYNNTQTTNASRLDNFLANT--DTGITKSIEESFNA 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR-ADADKEIELEISNLRRFLSE 169
           +   +++ +        + +AE   + FN    EV++    + ++EI+  ++ +    + 
Sbjct: 118 INGITEDPTIISARNVFLSSAESTAKRFNNMFSEVEQQHLGNINQEIKTTVAAINEITAR 177

Query: 170 LTVVNDAIKFKTA---SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +  +N  I    +   +   A+D LD+RD+L+ ++SE + ++ I   +  + +    G T
Sbjct: 178 IGQLNGEIAVANSVAENGFPANDLLDKRDLLVSQLSEKVQVNIIDLPDGTINLTVGTGLT 237

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIF-IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           L           + N +        I    G    +   + +  G +  L +IR+ ++  
Sbjct: 238 LVAGTFAVPLSVERNEFDSNKLEVGIAPTPGAPNKAIVTNQLDGGSLGGLFKIREELLLP 297

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               + ++A     +F+ +  +  +     G  +   I D    L + ++          
Sbjct: 298 AIRDMGKIAIAYADAFNRQQSLGRDLNGDEGTNLFKDINDPQVALTRTLNSKQNPTASDF 357

Query: 346 S 346
           S
Sbjct: 358 S 358



 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/415 (9%), Positives = 119/415 (28%), Gaps = 14/415 (3%)

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
           ++ +    L   F+  +E++              +   +  +S  ++L+ D       + 
Sbjct: 276 TNQLDGGSLGGLFKIREELLLPAIRDMGKIAIAYADAFNRQQSLGRDLNGD----EGTNL 331

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
            +++        R +   +     +  + I+N      E     + +     + +     
Sbjct: 332 FKDINDPQVALTRTLNSKQNPTASDFSVNITNASLLTGE-----EYLMEVDQTGNLVVSD 386

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
            D+  +     ++I  +S    +  ++     +       +     F    +Y+ + E  
Sbjct: 387 KDKNVLATYTPADIAAMSPPTNDRLEIPDTGLNINIAKNNLAVGDRFLIRATYSGSREIE 446

Query: 251 PIFID-GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
               D  +V ++     V        +++    +    N               +  +  
Sbjct: 447 RTLEDPNLVAAAGNALDVSAPTNPNNVELSLYEITDTSNANFPNQANFPPPLDPQIRVVV 506

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           ++              L        +               L+   + ++ F    +   
Sbjct: 507 DATGTQYSIQDSAGNPLAAPAGGPFNIPSDQVIDLPGMRLELKGQLAGNEVFNITNQGGT 566

Query: 370 GYPD----LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
              D          ++       +         T  E     + ++              
Sbjct: 567 APFDEKKFGPGDNSNALIMLEYQNKKTLDGGTNTFSESYAELVTFVGVKTQSGKINADSF 626

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+     +  +   GVNL EE + LI+ +Q+Y+ + ++I   ++   +LL+ V+
Sbjct: 627 AVLLAGAEQRMAAISGVNLDEEAANLIRYQQAYSAAARIISIANETFDSLLQAVR 681


>gi|78358192|ref|YP_389641.1| flagellar hook-associated protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220597|gb|ABB39946.1| Flagellar hook-associated protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 696

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/396 (11%), Positives = 125/396 (31%), Gaps = 16/396 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M+L ++ +  ++    +     +   NI N +   Y R+                    V
Sbjct: 1   MTLNSLLSVGKDALFASQSAIQTTGNNIANVNTPGYSRQAVRFEAKTPIDWKPGQMGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                        ++  H H +   + +         E +  ++  +      +S+    
Sbjct: 61  KAAEVFRYFNTFIEQEYHDHFATEQRWKAQHQMLQSVESLF-NESNSKGINAALSQFFTD 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  ++   +    + ++ + + +    N++A  + ++    D+ I  ++    + + ++
Sbjct: 120 WQQLAQRPDDKATREALLAHTQSLTSLINSTADSMNQLEHQMDEYIRQDVDKANKLIKDI 179

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N +I+       ++A+  LDQR+ ++++++ I+ +  I R + D VV T  G TL +
Sbjct: 180 AELNRSIQVHDIPGSNNANTLLDQRNQMVRELAAIMDVDVIDRGSGDFVVNTKAGHTLVD 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP----KGKIKALLQIRDSVVPI 285
                    +    +   +  P F   +V   +           G               
Sbjct: 240 GEESFELKFEGPKTSAVVKGVPPFDGEIVFEGSSAREYTLEIVSGGAVGGGATFKVSYDG 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            +  L +    L   F           +   ++   G  DL       I     +     
Sbjct: 300 GRTWLTDETTGLPKEFQANAQTGKVHVDGLDIYFNAGANDLAAGDEFTIVPKSGLYWVRP 359

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           +         + ++      + + G       + D+
Sbjct: 360 TTEPLNITPMAFAEGGDNPRRLVGGTLAGYFSFRDA 395



 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 93/308 (30%), Gaps = 6/308 (1%)

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
           + +    +   + ++ D   ++++  +            + YT  G ++ +      +  
Sbjct: 389 YFSFRDANLGKYQEKLDAFSRELAWQVNYLHSQGAGLGHLDYTRGGDSVNDPALALGDAS 448

Query: 239 KMNSYTVTSESNPIFIDGVVVSSN-----QGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
              SY    +S  + +     ++                 A        +    N ++  
Sbjct: 449 SGLSYFDKLKSGNLTMYFFDSATGELASGASFGPLDFGGGANFDPSVHTLDDVVNAINTS 508

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
               + +    + +  ++ +      AD    L   L                 P  L D
Sbjct: 509 WGGYVTASIADNQLVLDAADGYQFGFADDSTGLLAALGINTYFQGDSAVTLGMRPEVLAD 568

Query: 354 GGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              ++        +   G  D          K            N +L EY       + 
Sbjct: 569 VSRINAGRINGGGEANVGDNDTATAISGLATKKLDIPTSYEQGRNQSLSEYFNTISANVG 628

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + + +         + + +S    +  GVNL EE+S L+K + SY  + KL+   D+ML
Sbjct: 629 SDTAQAKFGSDFYGTLADDLSARQDSVAGVNLDEEMSSLVKFQHSYKAAAKLVTTADEML 688

Query: 473 QTLLEGVK 480
           Q LL   +
Sbjct: 689 QVLLGLKQ 696


>gi|46578934|ref|YP_009742.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448346|gb|AAS95001.1| flagellar hook-associated protein FlgK, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311232792|gb|ADP85646.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris
           RCH1]
          Length = 698

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/381 (11%), Positives = 113/381 (29%), Gaps = 15/381 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           MS+ ++FN   N  N A     +   NI N +   Y R++                 + V
Sbjct: 1   MSISSLFNLGWNALNGAQSAIQTTGNNIANVNTPGYSRQEVRFEEAPTLDKFGGQMGQGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                                S   +           E +  ++   +     ++   + 
Sbjct: 61  YAAEVIRHFNKFLFSSYLDKYSTQQRWEKQYEELQGVENLF-NEANTSGINAALTTFFND 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  SK   +  + + ++ +++ + +    +   + +++ + D++I  ++  +   L  +
Sbjct: 120 WQELSKRPDDKSVREALLAHSDNLTKLIRNADDTMLRMQQEIDQQIGQDVDAVNDMLRSI 179

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  +        ++A+   DQRD L++K++E + ++ +     +  V T  G TL +
Sbjct: 180 ADINRQLNIHDDPGRNNANTLYDQRDQLVRKLAEKLDVTVVDNGGGNYTVNTKAGQTLVD 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                              +   F   +  + +  S      +        +        
Sbjct: 240 GTVAYELRFDGPKSEAQLTTTSAFDGTLEFTGSDSSEYTLEVVTGGAVGTATYRVSLDGG 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
              +        +E       S     +   D       +                   +
Sbjct: 300 QTWLKDA---DGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGDRFTITPKSGLYWVT 356

Query: 350 FLRDGGSVSKKFLWNVKNLAG 370
             RD  +V+ + L +  +   
Sbjct: 357 PTRDPLNVTPQALSDGTDNTS 377



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/438 (11%), Positives = 118/438 (26%), Gaps = 25/438 (5%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           +   V   T R         +  A  + +             + +         P     
Sbjct: 283 TGGAVGTATYRVSLDGGQTWLKDADGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGD 342

Query: 106 KLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +   + +S  Y    + D L  T    ++        +   +  +    D +I      L
Sbjct: 343 RFTITPKSGLYWVTPTRDPLNVTPQALSDGTDNTSRITGGSLGALFTVRDDKIGEYRDKL 402

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
             F +                      + + + +  + + +  ++             S 
Sbjct: 403 DAFAN--------------------TLMWEVNRIHSQGAGLEKLAQSAGTTKVPNTTASL 442

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G+        D   +      V  ++    ++   +  +                   VV
Sbjct: 443 GSPTAGINFHDRLQDGNIGIYVYDKTTGAVVNSGSIDFSSVVPPGLANFSKDDHSLQDVV 502

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               N        LI +  +   +  +               +   L             
Sbjct: 503 DAINNDAK--FTGLITASIKDGKLVVDGVGDNVFSFGADSTGVLAALGLNTFFQGSGAAD 560

Query: 344 YRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               P   ++ G ++        +  +G  +          K       +  + N +L E
Sbjct: 561 IALRPELRQNTGLINAGQVNGASEGNSGDNNSAKEIAALSTKKVTVSMFSSNSGNQSLSE 620

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +  + +  +  + + +       Q + + I    S+  GVNL EE++ L+K + SY  + 
Sbjct: 621 FYSSIVAVVGADTASAKFNKAFHQAMSDDIDSRMSSVSGVNLDEEMASLVKFQHSYKAAA 680

Query: 463 KLIMFTDKMLQTLLEGVK 480
           KL+   D+M Q LL   +
Sbjct: 681 KLVTTADEMFQVLLRLKQ 698


>gi|94986792|ref|YP_594725.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00]
 gi|94731041|emb|CAJ54404.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00]
          Length = 502

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/506 (10%), Positives = 116/506 (22%), Gaps = 32/506 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54
           ++             S    ++  NI NA+   Y ++  +                    
Sbjct: 1   MMGSLFIGATGMKTHSTGLGTVSNNIANANTIGYKQQQVVFQDLFSQDLAIGSTGSQGPN 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           Q      +          A      +       +        +          R + + +
Sbjct: 61  QAGMGAQVGSVRTIFTQGAFEPGNSVTDLAIGGKGFFQVTLEDKVHYTRAGNFRFTQDGF 120

Query: 115 SKNLSEDILGKTVIDNAEEV--------------------VQNFNTSAREVQKIRADADK 154
             + S   L  + I N   +                        +T+   V  +    DK
Sbjct: 121 LNDPSGFTLMGSRISNNPNIKKETLEPIQLDFNDPTVAKSPAKTSTALNAVVNLGDSTDK 180

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
                        S        I     S        DQ+           G  +   + 
Sbjct: 181 TQSEANPYFALLESWKGNGTPPISTSNYSYAQPMRVYDQQGNSHDITVYFDGAPSSTGSK 240

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
               +   +     +              + T   +       + +     +  K     
Sbjct: 241 TFEYLVAMN--PSEDGSAASGTDSAGLLMSGTMTFSSNGELKNMTAFTPTGSATKDLNAW 298

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                 + +P F           +                P    A G           I
Sbjct: 299 QPAPLVNGLPQFSANFVGAGIQPLTLDFGIKSQQNMWAGAPASAAAIGTDIGKLPSMMPI 358

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
             +   +     + S  R       +       +     L   Y +S   +F   P+A  
Sbjct: 359 QTSSGNSTARNGSSSTRRYSQDGYPQGDLVDVTITSEGKLQGKYSNSQVVDFYNIPLARF 418

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
            +   L     N         S   +  +     +  +S +   T  V++  E+  +I +
Sbjct: 419 TSEDGLRREGNNHYS--ATLDSGGPEFGLPGTSNYGKLSVNQLETSNVDMSREMVNMIII 476

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ + +++K +   D MLQ  LE  +
Sbjct: 477 QRGFQMNSKSVTTADTMLQKALELKR 502


>gi|111115108|ref|YP_709726.1| flagellar hook protein FlgE [Borrelia afzelii PKo]
 gi|216263795|ref|ZP_03435789.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1]
 gi|110890382|gb|ABH01550.1| flagellar hook protein [Borrelia afzelii PKo]
 gi|215979839|gb|EEC20661.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1]
          Length = 442

 Score =  139 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/490 (9%), Positives = 114/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDVRG 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                  A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGGNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  ++Q+ +    I+      N  +  +    ++ E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPVIQEGASSADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         + Q  
Sbjct: 219 LR------VVKDPNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPSQKGDVLQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +           G +     +  D    +                 
Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGTVGSYTDSITQFADASSTK----------------- 315

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 316 --AIIQDGYGMGYMENYEIDQNGIIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQARIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|120603465|ref|YP_967865.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris DP4]
 gi|120563694|gb|ABM29438.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris DP4]
          Length = 698

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/381 (11%), Positives = 113/381 (29%), Gaps = 15/381 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           MS+ ++FN   N  N A     +   NI N +   Y R++                 + V
Sbjct: 1   MSISSLFNLGWNALNGAQSAIQTTGNNIANVNTPGYSRQEVRFEEAPTLDKFGGQMGQGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                                S   +           E +  ++   +     ++   + 
Sbjct: 61  YAAEVIRHFNKFLFSSYLDKYSTQQRWEKQYEELQGVENLF-NEANTSGINAALTTFFND 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  SK   +  + + ++ +++ + +    +   + +++ + D++I  ++  +   L  +
Sbjct: 120 WQELSKRPDDKSVREALLAHSDNLTKLIRNADDTMLRMQQEIDQQIGQDVDAVNDMLRSI 179

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  +        ++A+   DQRD L++K++E + ++ +     +  V T  G TL +
Sbjct: 180 ADINRQLNIHDDPGRNNANTLYDQRDQLVRKLAEKLDVTVVDNGGGNYTVNTKAGQTLVD 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                              +   F   +  + +  S      +        +        
Sbjct: 240 GTVAYELRFDGPKSEAQLTTTSAFDGTLEFTGSDSSEYTLEVVTGGAVGTATYRVSLDGG 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
              +        +E       S     +   D       +                   +
Sbjct: 300 QTWLKDA---DGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGDRFTITPKSGLYWVT 356

Query: 350 FLRDGGSVSKKFLWNVKNLAG 370
             RD  +V+ + L +  +   
Sbjct: 357 PTRDPLNVTPQALSDGTDNTS 377



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/438 (11%), Positives = 118/438 (26%), Gaps = 25/438 (5%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           +   V   T R         +  A  + +             + +         P     
Sbjct: 283 TGGAVGTATYRVSLDGGQTWLKDADGNELHYTTQTSPTTERVKGLDISFTGATQPMSAGD 342

Query: 106 KLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +   + +S  Y    + D L  T    ++        +   +  +    D +I      L
Sbjct: 343 RFTITPKSGLYWVTPTRDPLNVTPQALSDGTDNTSRITGGSLGALFTVRDDKIGEYRDKL 402

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
             F +                      + + + +  + + +  ++             S 
Sbjct: 403 DAFAN--------------------TLMWEVNRIHSQGAGLEKLAQSAGTTKVPNTTASL 442

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G+        D   +      V  ++    ++   +  +                   VV
Sbjct: 443 GSPTAGINFHDRLQDGNIGIYVYDKTTGAVVNSGSIDFSSVVPPGLANFSKDDHSLQDVV 502

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               N        LI +  +   +  +               +   L             
Sbjct: 503 DAINNDAK--FTGLITASIKDGKLVVDGVGDNVFSFGADSTGVLAALGLNTFFQGSGAAD 560

Query: 344 YRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               P   ++ G ++        +  +G  +          K       +  + N +L E
Sbjct: 561 IALRPELRQNTGLINAGQVNGASEGNSGDNNSAKEIAALATKKVTVSMFSSNSGNQSLSE 620

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           +  + +  +  + + +       Q + + I    S+  GVNL EE++ L+K + SY  + 
Sbjct: 621 FYSSIVAVVGADTASAKFNKAFHQAMSDDIDSRMSSVSGVNLDEEMASLVKFQHSYKAAA 680

Query: 463 KLIMFTDKMLQTLLEGVK 480
           KL+   D+M Q LL   +
Sbjct: 681 KLVTTADEMFQVLLGLKQ 698


>gi|85715030|ref|ZP_01046015.1| hypothetical protein NB311A_11677 [Nitrobacter sp. Nb-311A]
 gi|85698227|gb|EAQ36099.1| hypothetical protein NB311A_11677 [Nitrobacter sp. Nb-311A]
          Length = 620

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 138/411 (33%), Gaps = 18/411 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           MSL +  + A +         + +  N+ NA+   YV +  +        +   V ++  
Sbjct: 1   MSLSSALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQIVTGSTGSGVRIIGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      L   ++       + +     + +      + +     ++   +L++ S
Sbjct: 61  SRTLDAYVQSQLRTENAGSAYASQIAAVLGQLQNVYGTPGNDGTLEAAYNRFTSALQALS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +        +V++ A+ + Q  N +   +Q +R++A++++ + +S     + ++  +N 
Sbjct: 121 ASSGNPAAQSSVLNAAQALAQQLNATTGGIQTLRSNAEQDLSVSVSQASAAMQQIAQLNQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR-D 234
            ++  +     A   +DQRD  + ++S ++ I  +    N   V+T+ G  L   V    
Sbjct: 181 RLQSVSVQDPAAATLMDQRDAAIDQLSRLMDIRAVTDGANQTSVFTTSGVQLVGGVYAST 240

Query: 235 INFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           + F   +S T  S+ N                +G  +       +  G+I A +Q+RD +
Sbjct: 241 LTFNAQSSLTANSQWNADPAKSSVGTIICQLPNGAKIDMIASQGINSGQIAADVQLRDKI 300

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   QNQ+D+MA  L  + S+           P  F  D    L                
Sbjct: 301 LVQAQNQVDQMAATLASALSDITTGGVPVTGPPSGFDLDPSNMLPGNSFSVTYTDSGNVS 360

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
              +                 N  +     D         ++         
Sbjct: 361 HTVTVVRVDDPAALPIPNTASNPNDSVIGVDFSGGLASIVSQLNAQIGATS 411



 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/419 (10%), Positives = 109/419 (26%), Gaps = 10/419 (2%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L    +          F      +    + +    +  S L  + +  +      +  
Sbjct: 207 SRLMDIRAVTDGANQTSVFTTSGVQLVGGVYASTLTFNAQSSLTANSQWNADPAKSSVGT 266

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
                     +    +      +I AD     ++ +    +       +  A+   T   
Sbjct: 267 IICQLPNGAKIDMIASQGINSGQIAADVQLRDKILVQAQNQVDQMAATLASALSDITTGG 326

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                     D+    +      S    ++ ++        T+              +  
Sbjct: 327 VPVTGPPSGFDLDPSNMLPGNSFSVTYTDSGNVSHTV----TVVRVDDPAALPIPNTASN 382

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                  +   G + S         G    L            +     + V   S +  
Sbjct: 383 PNDSVIGVDFSGGLASIVSQLNAQIGATSHLTFSASGSQLRVVDDGSGASTVTAASTTTT 442

Query: 305 DPIAGNSENVPGLFIADGI-----KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                +       F                   G++  I VN    ++PS L    +   
Sbjct: 443 VQSLASGNPQLPFFTDRASLYTGAITGSASQITGLAGRIQVNAALLADPSKLTIYSTSPV 502

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +        D +     +++ N      A      TL  + +  +       + + 
Sbjct: 503 TPAGDTTRSDFIFDRLTSATFTYSPNTGLGAAAA-PFQGTLPSFLQQFVSLQSGAATTAK 561

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +    ++V N + + +    GVN+  E++ LI ++ SY  +  ++     M+QTLL+ 
Sbjct: 562 QVAQGQEIVVNTLQKKFDAEAGVNMDTEMANLIALQNSYAANAHVMTVVQSMMQTLLQA 620


>gi|256830170|ref|YP_003158898.1| flagellar hook-associated protein FlgK [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579346|gb|ACU90482.1| flagellar hook-associated protein FlgK [Desulfomicrobium baculatum
           DSM 4028]
          Length = 697

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 97/278 (34%), Gaps = 12/278 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
            + ++FN  +            +  NI NA+ + Y R+                    V 
Sbjct: 3   GIASLFNIGKQSLFANQAAIEVVGNNISNANTEGYSRQAVRFEDGYYISYSPGQLGTGVN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                       + + +  SS   + + L       EM+  ++         +S      
Sbjct: 63  AAEVIRYFDEFTEVMYNTKSSEQQRWQKLYENLQNVEMIF-NESNAQGVNSALSAFWADW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++ + N  +  +   ++ +A  + Q       ++Q+++   D  I  E+  +   L  + 
Sbjct: 122 QTLATNPGDTSVRAALLGHASNLEQAIGVVQADLQRLQGQTDDTIAAEVQEINTLLKSIA 181

Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N  I     +  ++A+   DQR  L+++++E I I+ I     ++ + T  G TL + 
Sbjct: 182 ELNSQITVTEETGKNNANGLRDQRASLVRELAEKIDINYIDNGLGNVTITTKAGHTLVDG 241

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                   +   ++ + +S   +   V  +    S   
Sbjct: 242 TNAFRLAFESAPFSASLDSASTYAGTVSFNGESSSEYT 279



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 55/188 (29%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                L  S  +         +    F +D    L         E         +N    
Sbjct: 509 TFGGALTASAPDNHLQITADADHDFAFGSDTTGLLAALGINTFFEGSDARTLSVNNSVRS 568

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 +       +  AG   +         K      V    T  TL EY    +   
Sbjct: 569 NTSRINTGHVNGAGEMNAGDNTMAAAIAALQTKAVATRTVTEGTTRQTLGEYYSTLVAKA 628

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +   +       + + N +     +  GVNL EE++ LIK + +Y  + KLI   + M
Sbjct: 629 GSDTQSAKFNAEYQEALANDLKSRQESVSGVNLDEEMTNLIKFQHAYTAAAKLITTAESM 688

Query: 472 LQTLLEGV 479
           L+ LL   
Sbjct: 689 LEVLLGLK 696


>gi|157363535|ref|YP_001470302.1| flagellar hook-associated protein FlgK [Thermotoga lettingae TMO]
 gi|157314139|gb|ABV33238.1| flagellar hook-associated protein FlgK [Thermotoga lettingae TMO]
          Length = 841

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 114/359 (31%), Gaps = 27/359 (7%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTIS-----------------PENVTVVTQRSENKNMF 63
              +  NI N+    Y R+  +   +                      V   +       
Sbjct: 1   MNVVAHNIANSSTDGYSRQRPVIQTTSPIPLATLTQPSIPLMLGTGSQVTDVQRVRDLFL 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D      S+       + S     E + + +  ++           + E    + +    
Sbjct: 61  DIQYRQTSNRYSYFDTIYSNLHYIEQLFS-EPGDSGIRSLYDSFLSAAEEIITDPTNVAA 119

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            +  I  AEE+V N       +Q++R D ++EI     ++   +  L  +N+ I+   A 
Sbjct: 120 KREFISRAEELVTNIKDLYTRLQQLREDINQEIYQTTDDINSMVERLAQINEQIRISVAF 179

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
               +D LD+RD +L ++S+   IS    ++   ++   D   L  +V  +I  E+    
Sbjct: 180 GTTPNDLLDERDRILDELSQYANISYYETSDGQTILMFGDQVVLSGSVQTEIRAEQRPYA 239

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
               E           + N    V  GK+KAL  +RD  +  + N LDE A  L    + 
Sbjct: 240 KGFFEL---------FAGNSKITVSDGKLKALFDLRDGGIVKYMNYLDEFALSLTDKLNL 290

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 +S                          I  + +  S P +   G S      
Sbjct: 291 IHREGFDSSGKITGLNLFNPIVSSYGNDDPALYRILGSRKISSGPLYYATGLSGYTSES 349



 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/412 (9%), Positives = 118/412 (28%), Gaps = 29/412 (7%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             + + S  I  +  L     + E ++     + +     +++   L +    +  D L 
Sbjct: 451 SNVQSGSYTINFEETLSDGTKITETLNIAVDSSTTLNDIANQVNSQLSNVHALIVNDTLL 510

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
                  E      +        ++A AD +    + +    L  +              
Sbjct: 511 IIPNGQMEFDPDRLSIVDDGGFFVQAGADYK-TYTVLDPSETLENIAFSMTNFDATNGFD 569

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
              ++     D     + +++             +       L         F+ M+   
Sbjct: 570 IIINNTKIHIDPTRDTLEDLVTKINSTNTGVTADLTPHSAFVL--RAGESYGFDLMSFTI 627

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
              +     +  +  +S+  +      +   L  R+      +N+L              
Sbjct: 628 EGPQGLFEMLGLIDTNSDPVNFDADWSVSYTLISRNEDFDSVRNRLSLSEF--------- 678

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             +  +       +      ++ N L            +   N ++       + +    
Sbjct: 679 --LTVDKRQSYEPYFFVDQWNVSNALLLNAESLAVDIGKTLWNITWNATDFLPTGESNVE 736

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
           + NL           D                  +  E+    +  L      +  +   
Sbjct: 737 IVNLISSSRYETLLSD---------------GKESFYEFMGGIVAELGVESESASKMKDN 781

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           ++++ + I ++  +  GV+L EE++ +I+ + ++N S ++I   D+M+  ++
Sbjct: 782 TELLRSEIDQARESVKGVSLDEEMTNMIQYQHAFNASARVITTIDEMIGRVI 833


>gi|219684598|ref|ZP_03539541.1| flagellar hook protein FlgE [Borrelia garinii PBr]
 gi|219671960|gb|EED29014.1| flagellar hook protein FlgE [Borrelia garinii PBr]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/490 (9%), Positives = 117/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++++ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPIIEEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         + Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTIGFDNEGALASLNGQPGQKGDVLQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +                             +        Q+  + S
Sbjct: 273 ITFNVVGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|312147981|gb|ADQ30640.1| flagellar hook protein FlgE [Borrelia burgdorferi JD1]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 116/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +           + +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEAGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFINPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|297583333|ref|YP_003699113.1| flagellar hook-associated protein FlgK [Bacillus selenitireducens
           MLS10]
 gi|297141790|gb|ADH98547.1| flagellar hook-associated protein FlgK [Bacillus selenitireducens
           MLS10]
          Length = 660

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 21/277 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S       A+   N A     ++  NI NA+ + Y R+   T  +               
Sbjct: 3   STFHGLETARKALNTAQTSLHTVGHNIANANTEGYSRQRVNTKTAQPFPSPAFNKPDIPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   + +       D      ++  G            E +  ++       + +
Sbjct: 63  QLGTGVKAGSIQRIRDEFLDLQYRGENNQHGYWSARHDAWMKVEDIM-NEPSEEGLANVM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            +  +SL+  S N  +      V      + + FN S   +++I+ +  +E+E    ++ 
Sbjct: 122 DEFWESLQDLSVNPEDAGARSVVRQKGIALSETFNYSYDAIEQIQREYGEEVETSTKDIN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  +N  I          +D  DQRDVL+ ++SE + I      +       + G
Sbjct: 182 SLLRQINNMNRQIAAVEPHNMLPNDLYDQRDVLVDQLSEHLNIKIDRIGSGGNASSEASG 241

Query: 225 T---TLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
               TL +   R    + ++   +      +   G  
Sbjct: 242 KYTITLLDDAGRSTGIKLVDGSQLDFNELEVQYQGDG 278



 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/381 (8%), Positives = 108/381 (28%), Gaps = 24/381 (6%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           T    +      S   +             +   +           ++  + D  +    
Sbjct: 297 TEQSDRFNGDENSVRIDAFPSSGSYLAKIQSYGYIDAEGDEGGTFPEMLQELDTMVNTFT 356

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           +           +++    +   +    +     +   ++I                  +
Sbjct: 357 AEFNAVHRTGWSLSEIENGEKHLQGVTGNGNGNGNQPDEEI-------------FGFDFF 403

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
             +     +      + +   S   ++++      G  ++ +   A         +   +
Sbjct: 404 DFNPGVGEDGKRAAKHLKVHESIMASTDNIAASGAGGTITGSMQPAEGTAYTGDGVIAAN 463

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-TIC 339
                  + L          +          +            D D +    I+  T  
Sbjct: 464 GRFSGSYDALTVSYDGATEEW------TFARDGAAFDPPETFSYDPDGEQSITINGLTFD 517

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            +  Y  + +        +   + N++    +        ++     + D       N T
Sbjct: 518 FSSFYDGDGNLTDAPDDAAVFAIDNLRRTEAFS---GDGSNALALANVKDTNLDFGGNTT 574

Query: 400 -LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            +  Y +  +G +    S+++ L   + V+ + ++E   +   V+L EE++ +I+ + +Y
Sbjct: 575 NVQSYYQAVVGEMAVQTSEANRLAQNTDVLRDSVNERRQSVSSVSLDEEMTMMIQFQHAY 634

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
           N + + +   D++L  ++  +
Sbjct: 635 NAAARSLTAVDEILDRIINQM 655


>gi|126668558|ref|ZP_01739512.1| flagellar hook protein E [Marinobacter sp. ELB17]
 gi|126626963|gb|EAZ97606.1| flagellar hook protein E [Marinobacter sp. ELB17]
          Length = 435

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/476 (13%), Positives = 119/476 (25%), Gaps = 46/476 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN   +    A+        NI NA    +            N  + +  +   +    
Sbjct: 2   AFNTGLSGLRAAAVDLDVTGNNIANASTVGFKGSRVQFGDLYANGFLSSGNAPVGDGISV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                S     +        F    +     ++          +     + +  N     
Sbjct: 62  QSVKQSFGQGNVSFTDNGLDFAIDGDGFFVLNNGGELRYSRAGQFGTDKDGFVVNNQNMR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   V             +A  +  IR D     +         L     ++   +  TA
Sbjct: 122 VQGFVA-----------DAAGNLSGIRDDLQIGSDNLSPQRTTNLRTDLNLDAREQVLTA 170

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +     D LD                T   +     ++ S G     T           S
Sbjct: 171 TPPIPFDPLDP---------------TTYNHVTATNIFDSLGNPHEVTQFYTKQAPASGS 215

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              ++    + IDG  V    GS            + D    +     +    + I ++ 
Sbjct: 216 Q--SNWLLHLQIDGEAVGGAAGSTTTPPNFVPYELVFDQSGNLASADSNANGVISIANWV 273

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            KD                      +         +    QY +N               
Sbjct: 274 PKDGD-------------LNANGAASGAGAAFDLNLGSATQYGANFGVNDQRQDGFTTGR 320

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +  +++    +   Y +  +K+     +A  N    L         W+E   S    + 
Sbjct: 321 LSGLDVSQQGVIFARYTNGQSKSLGQVALASFNNTDGLSP--SGDTSWVETFESGQAVIG 378

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I  S      V+L  EL  LI  +++Y  + K I  +D + QT++  
Sbjct: 379 RPDSGTLGAIQSSSVEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIINL 434


>gi|109899396|ref|YP_662651.1| flagellar hook-associated protein FlgK [Pseudoalteromonas atlantica
           T6c]
 gi|109701677|gb|ABG41597.1| flagellar hook-associated protein FlgK [Pseudoalteromonas atlantica
           T6c]
          Length = 709

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 145/400 (36%), Gaps = 7/400 (1%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKNMF 63
            + + A++    ++Q  ++   NI N + + YVR  T         V   T         
Sbjct: 6   DLLSIARSGVEASNQLLSTTGNNIANVNTEGYVRERTNFVAELTGGVGQFTTERVMNTFA 65

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              L   ++ + +     S  A+ + + A +   NS +  +S+   SL++ + + +    
Sbjct: 66  QNQLRRDTTNLAEHEAYWSKTAVLDNVFASEA--NSISSSMSRFFASLQTANDDPTNMSA 123

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            + V+ +AE ++    T +  + +   + + E E  ++ +   +  +   N++I+   A+
Sbjct: 124 RQLVLGDAESMLGQMGTLSTFLAEKEREVNFEFEASLNKVNSLVESIASFNESIRIAQAN 183

Query: 184 K--HDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
               +    ++QRD  + ++S ++ I T     N+  +++  + G +L         FE 
Sbjct: 184 NRHDEPGALMNQRDNAVLELSSLVSIETRNSSNNDGSIMINLTSGESLVMQDGTFSVFEV 243

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            NS  +  +S  +  +G   S N       G I  L + RD V+   + +L ++A  +  
Sbjct: 244 NNSADLNYKSLQLTSNGKPTSLNLAETELGGTIGGLFRYRDEVLEPSRRELGQIALAVTE 303

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + + ++    + +   G  I                 T  VN +     +          
Sbjct: 304 AVNTQNRAGMDYDQQLGGEIFTRPITTALNYPGNADSTSIVNGRISKGGASEITSADYRV 363

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                   +    D+     +           A I  N T
Sbjct: 364 TIDGVTAGVPPTVDVTVELLNLDGSAVTDVNGAAITQNYT 403



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/450 (12%), Positives = 135/450 (30%), Gaps = 13/450 (2%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                 +    T+         + +         +GQ  L  +     +  +  D+    
Sbjct: 264 SLNLAETELGGTIGGLFRYRDEVLEPSRR----ELGQIALAVTEAVNTQNRAGMDYDQQL 319

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                ++   +  +Y  N     +    I                +  + A     +++ 
Sbjct: 320 GGEIFTRPITTALNYPGNADSTSIVNGRISKGGASEITSADYRVTIDGVTAGVPPTVDVT 379

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD--FLDQRDVLLQKISEIIGISTIVRNNNDM 217
           +  L    S +T VN A   +  +   A    + +    +  + S+  G +   +     
Sbjct: 380 VELLNLDGSAVTDVNGAAITQNYTGLTAQSGEYNEIFGGIELEFSKGTGYTVGDQFLLQP 439

Query: 218 VVYTSDGTTLFETVPRDINFEKM-------NSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
               +D   +F T P D+            ++   +   +    +  V ++   S     
Sbjct: 440 TKDVADKIEVFTTRPEDLALASPIRIEAGEDNLGGSELVSTTVTNTFVDTAPFDSRSSGF 499

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                +    +           +       +   D        V G+   D + +  +  
Sbjct: 500 DGAGGIHAPGAAPGGGVGAPAAVRFNSATEYEVLDSAGTVITTVSGISSMDNLLEQASGT 559

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               +    ++     + +   +  +     +   +N            +  N+N +   
Sbjct: 560 PGWPAAFSALDNYPGYDFTLQGEPKAGDTFSISFNQNGLNDNRNGLIMANLQNENGMQLN 619

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            AG    V+  E   N +G + +  +++       + +     + Y +  GV+L EE + 
Sbjct: 620 NAGSGDPVSFHEAYANIVGDIGQKAANADIAVKAGEALKLQSKDWYDSVSGVSLDEEAAN 679

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L++ +QSY  S +L+    +M  T+L  V+
Sbjct: 680 LVRFQQSYAASARLLNTAQEMFDTILSMVR 709


>gi|115523523|ref|YP_780434.1| flagellar hook-associated protein [Rhodopseudomonas palustris
           BisA53]
 gi|115517470|gb|ABJ05454.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           BisA53]
          Length = 629

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/464 (12%), Positives = 141/464 (30%), Gaps = 31/464 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           MSL    + A           + +  N+ NA+   YVR+               V V   
Sbjct: 1   MSLGDALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTIDQVTTNSGSVGSGVRVYGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +        +   +S  G   L   F    + +  +     +  +  + L  ++++ S
Sbjct: 61  NRQLDEYIQAQVRTETSGAGYTTLKSDFLQQLQSIYGNPDNTGTLENAFNGLTTAIQALS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         V++ A+ + Q  N+  + +Q +R   +  ++  ++     +S++ V+N+
Sbjct: 121 TSPESQSARLGVLNAAQVMAQQLNSMTQGIQSLRNSCEIGLDDSVNYANNLMSQIAVINN 180

Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            ++                LDQRD  + ++S+++ I     + N + ++T  G  L    
Sbjct: 181 NLQANPLGGTSTTGEVAALLDQRDQYITELSQLMDIRVTFNSANQVTIFTPTGIQLVGNE 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDS 281
              + F    +    +  +                   S +  +++  GKI A +++RD 
Sbjct: 241 AAHLEFNAQGTVNPATTYDTTASKSTLGAVTISYANGGSIDLTNSIKSGKIAAYVELRDK 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNS------------ENVPGLFIADGIKDLDNK 329
           ++   Q Q+D+ A  +  + S+K     +                          +  N 
Sbjct: 301 LLVEAQTQVDQFAATMSSALSDKTTDGVDFPVTIPPAVPLPRTGSQLDLTDLKSGNTINL 360

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                          R +   +    + +     +      +   I       N N   +
Sbjct: 361 TYTDALGAKKTLTIVRVDDPSVLPLSNTATVNPNDTVLGIDFSGGIAAAIAQLNANTSIN 420

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
                +          N  G    + + +             + 
Sbjct: 421 ADLRFSGTQAAFVVENNLAGTSNVDTASATTTVSSLTSGSPQLQ 464



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/412 (10%), Positives = 102/412 (24%), Gaps = 3/412 (0%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            ++ +               +      +               S  +          G +
Sbjct: 220 FNSANQVTIFTPTGIQLVGNEAAHLEFNAQGTVNPATTYDTTASKSTLGAVTISYANGGS 279

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           +                   K+  +A  +++   + +   LS+ T               
Sbjct: 280 IDLTNSIKSGKIAAYVELRDKLLVEAQTQVDQFAATMSSALSDKTTDGVDFPVTIPPAVP 339

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                 Q D+   K    I ++          +              +      N   + 
Sbjct: 340 LPRTGSQLDLTDLKSGNTINLTYTDALGAKKTLTIVRVDDPSVLPLSNTATVNPNDTVLG 399

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            + +      +   +   S     +             +      + A       S    
Sbjct: 400 IDFSGGIAAAIAQLNANTSINADLRFSGTQAAFVVENNLAGTSNVDTASATTTVSSLTSG 459

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                          G          G++  I VN    ++PS L    + +K       
Sbjct: 460 SPQLQLFTDNGATYTGAITAQGSQMTGLAGRISVNNALIADPSKLITFATPTKAGDTTRP 519

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           +          +              G     TLL + +          + +  +     
Sbjct: 520 DFLTKQLTATKF---QYSAQTGIGSTGTPYTGTLLSFLQQVTSTQGATAAAAAQIADGQN 576

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VV N + +  S   GVN+ EE++ L+ ++ +Y+ + +++   + M +TL++ 
Sbjct: 577 VVLNTLQKKLSTQSGVNMDEEMAHLLALQNAYSANARVMSTVNDMYKTLMQA 628


>gi|304310891|ref|YP_003810489.1| Flagellar hook-associated protein 1 [gamma proteobacterium HdN1]
 gi|301796624|emb|CBL44836.1| Flagellar hook-associated protein 1 [gamma proteobacterium HdN1]
          Length = 668

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/416 (12%), Positives = 134/416 (32%), Gaps = 20/416 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  +     +    +    ++   NI N     Y R+    +             +   V
Sbjct: 1   MADITQIGLSGLMVSKSALSTTSHNIVNVGTDGYSRQRVDISAIDPIKLGGKYIGQGAIV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                         L   +           F    + +  D   + + T  +    +S++
Sbjct: 61  NGISRITNTFLTDQLRRDTQNFNSYDSYFDFAGRVDSLLGDQ--STAITPTLQGFFNSVQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + +   + + ++  A  +   FNT   ++ +     +  ++   S +    SEL  
Sbjct: 119 DLNNDPASIPIRQVMLSEANALTNRFNTVYEQLYQQNQALNTAMQTITSEITERASELAS 178

Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N A+K  T +      +D LDQRD  L+ +S ++GIS     +N + V    G  L   
Sbjct: 179 LNLALKVATTNGVGAQPNDLLDQRDQALKDLSTLVGISVSYNPDNTVDVSVGTGQPLVLG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     N          +      ++++  S +  G++  LL++RD ++    N+L
Sbjct: 239 GDSFQLTADDNVTGYNHLGVKLT--TANLTTDISSQISGGRLGGLLKVRDELIDPVFNEL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE----TICVNPQYRS 346
             ++ V+  + +++  +  +  +  G      I +      +  +               
Sbjct: 297 GRLSMVISDTVNKQHKLGMDLNSNLGNNFFTNINEPWMTSSRVATGVKNTGNAGFSVTID 356

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           + + ++      +    N+  +      +               +AG    +T+  
Sbjct: 357 DSTKIKATDYTMRFDGTNLNLVDNATGQLAASLTPTGVPPESFALAGEGFTITIES 412



 Score = 83.5 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 99/434 (22%), Gaps = 19/434 (4%)

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V         +    L    S+      L     +++ +             +     +
Sbjct: 249 NVTGYNHLGVKLTTANLTTDISSQISGGRLGGLLKVRDELIDPVFNELGRLSMVISDTVN 308

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +          LG     N  E     +  A  V+            + + ++     +
Sbjct: 309 KQHKLGMDLNSNLGNNFFTNINEPWMTSSRVATGVKNTGNAGFSVTIDDSTKIKATDYTM 368

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-----EIIGISTIVRNNNDMVVYTSDGT 225
                 +     +       L    V  +  +       I I +    + DM       T
Sbjct: 369 RFDGTNLNLVDNATGQLAASLTPTGVPPESFALAGEGFTITIESGTLQDGDMFTVAPTRT 428

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
              +   +  N E++ + +    + P    G               +     +    VP 
Sbjct: 429 YASQVGVKVNNVEQIAAASPVRTTWPAANTGRGYVEKVIVTETDDPVTGTAFVGARGVPP 488

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                     V                                     +     +     
Sbjct: 489 TLALQPPYQIVFTS-------------GATYDVYDATNMAAPIASGTFVPNQSNLLLDGA 535

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                  D          ++ N+      I    +S     +      +    +  E   
Sbjct: 536 GIVDSGYDVSYNGVPVTGDILNIEYNAGGITDNRNSALLGALRTSKT-VLGTSSYQETYA 594

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  +     D+      SQ +             VN+ EE + LIK +Q Y  ++K+I
Sbjct: 595 KLVSGVGTRTRDAGIGQEASQSIMRQTQAQRDAVSAVNMDEEAADLIKFQQQYMATSKII 654

Query: 466 MFTDKMLQTLLEGV 479
             + ++   +L  V
Sbjct: 655 QVSQQLFDAILGVV 668


>gi|148546713|ref|YP_001266815.1| flagellar hook-associated protein FlgK [Pseudomonas putida F1]
 gi|148510771|gb|ABQ77631.1| flagellar hook-associated protein FlgK [Pseudomonas putida F1]
          Length = 676

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 139/417 (33%), Gaps = 15/417 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           + ++ N   +    A     ++  NI NAD ++Y R+  +                  T+
Sbjct: 1   MASLINIGMSGLGAAQSGMYTLGNNIANADVESYSRQQNVQKTKGGQQVGQVFIGSGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       +  L   +S   +       + +  + ++    +   T  +     S++
Sbjct: 61  ADVRRVYNAFIENQLRTTTSLSSEAS--SYLDQITPLDTSLSSSDTGITAALQSFFTSMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +   +ED   + ++ +A+ + + FNT + ++ +  ++ +  +      +      +  
Sbjct: 119 DAAAKPTEDASRQLLLTSAQSLAKRFNTLSSQLNQQLSNINSNMTAITDQVNNLTKTIAG 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N+ I    A     +D LDQRD  +++++++IG   + R +    VY  +G  L     
Sbjct: 179 LNEQIARVGAVSGQPNDLLDQRDGAVRELNKLIGTDVVER-DGTYDVYLKNGQALVLGNT 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 +  +         + ++      +  S+   G++  L++ R   +    N+L  
Sbjct: 238 TQTVGVEPTASDPGRL--SLVLNRGSTKMDITSSATGGELGGLIRYRSETLDPALNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+    + +     + +   G  +   I        + +++          + S   
Sbjct: 296 VALVVADQINSQLAQGIDKDGNFGATLFGDINSAKAMSERSVAKLGNSIGSGNLDVSIKD 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            G   +  +     +  GY               + D    +    TL         
Sbjct: 356 TGKLTTSDYQVTFTSATGYSVRKLPEGTEMGSYDLNDTPPPVIDGFTLSLNGGGLSA 412



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/312 (10%), Positives = 89/312 (28%), Gaps = 8/312 (2%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIG--ISTIVRNNNDMVVYTSDGTTLFETVPR 233
            + F +A+ +      +  ++    +++     I     + N   +   D   +  T   
Sbjct: 365 QVTFTSATGYSVRKLPEGTEMGSYDLNDTPPPVIDGFTLSLNGGGLSAGDSFKITPTRNA 424

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
             N E + +                  +     + +  + + L I D+          + 
Sbjct: 425 AANIETVLTDPKRLALASPLTATNGAGNKGTGVITQPTLTSQLDIYDATQRSQLQSGLKN 484

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +  +   F ++       +         G   +       +  ++ +     +       
Sbjct: 485 STPVKLVFGDETTSPQAYKLYDAKGTEIGSGTIVPGQANKLQLSVPMVDGSGNATGSSFT 544

Query: 354 GGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                     N          AG  D  N       +      V      ++  +     
Sbjct: 545 FEMSVSGAPQNGDSYTVALTGAGSADNRNAQSVIDLQTKSTVEVGANGKGISFTDAYAKL 604

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +      +      +  + +   +S ++  GV++ EE+  L+K +Q Y  S+++I  
Sbjct: 605 VSNVGGKAGQAEMDSDATNALHSSALDSRNSLSGVSVDEEVGNLVKFQQYYTASSQIIKA 664

Query: 468 TDKMLQTLLEGV 479
             +   TL+  +
Sbjct: 665 AQETFTTLINAL 676


>gi|225552055|ref|ZP_03772995.1| flagellar hook protein FlgE [Borrelia sp. SV1]
 gi|225371053|gb|EEH00483.1| flagellar hook protein FlgE [Borrelia sp. SV1]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/490 (10%), Positives = 117/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGKKVINTASDIEDLIIPIGDKEGARSTKNV------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +           + +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEAGEQQTVNLKLGT-------------------VGSYTDSVTQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   +      +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRELGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|224533123|ref|ZP_03673723.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23]
 gi|224511850|gb|EEF82251.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23]
 gi|312149691|gb|ADQ29762.1| flagellar hook protein FlgE [Borrelia burgdorferi N40]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/490 (10%), Positives = 117/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|195941363|ref|ZP_03086745.1| flagellar hook protein FlgE [Borrelia burgdorferi 80a]
 gi|221217779|ref|ZP_03589247.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a]
 gi|224533707|ref|ZP_03674295.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a]
 gi|225549062|ref|ZP_03770037.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a]
 gi|225550122|ref|ZP_03771082.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a]
 gi|226320584|ref|ZP_03796144.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805]
 gi|221192456|gb|EEE18675.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a]
 gi|224513000|gb|EEF83363.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a]
 gi|225369234|gb|EEG98687.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a]
 gi|225370288|gb|EEG99726.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a]
 gi|226234003|gb|EEH32724.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 115/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|269965418|ref|ZP_06179537.1| flagellar hook-associated protein 1 [Vibrio alginolyticus 40B]
 gi|269829897|gb|EEZ84127.1| flagellar hook-associated protein 1 [Vibrio alginolyticus 40B]
          Length = 646

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/448 (12%), Positives = 138/448 (30%), Gaps = 20/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N +   Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTDGYSRQSVIQGTNDPRMFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  S+    +   Q    +   M +           +++  D++++
Sbjct: 63  NVRRSWDQFAVNELNLSSTNNANKTDTQDNLDMLSSMLSSVASKK-IPENLNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V+      +K++++ I  + +   E+  +
Sbjct: 122 MADTPNDLGARKVVLEKAKIFSDTLNDFHETVRLQSDVTNKKLDMGIERVNQLALEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVTELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  + +   S    GKI ALL++RD  +P  Q+++  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGNGIKA-IKSDDMDGKIGALLEMRDKHIPQLQDEMGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A       ++      +     G  +   +        +  +               + 
Sbjct: 297 LATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDS-QADVAVYIEDIS 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++    +           + +++     + G+   +     A   +    
Sbjct: 356 AIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDRSDSSFVLDGMKVQIGEGLAAGERVLLRP 415

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
                +      +      I+       
Sbjct: 416 TRTGAAIIKMETNDA--KAIAAQSYEAS 441



 Score = 97.0 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 115/364 (31%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174
            + D    +   F+    ++Q    D + +I  ++ +++   L               V 
Sbjct: 289 QLQDEMGRLATGFSYKINQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFAAPDSQADVA 348

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I+  +A K   +      D       +   +S  +  ++   V       + E +   
Sbjct: 349 VYIEDISAIKGGEYSLRYDGDQYSVTTPKGEQMSLNIDRSDSSFVLDGMKVQIGEGLAAG 408

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + T  +       D   +++    A      +   + +       +     + 
Sbjct: 409 ERVLLRPTRTGAAIIKMETNDAKAIAAQSYEASTTFA-QGNAKFKIREAGDVKEFEVTVQ 467

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   +  +   + ++  +     +    L +G
Sbjct: 468 PADEKHDKPWLKITDNKGNLLSDKYSYPLDKDNPMIEISVPKSHPLYKNGDATVFELSEG 527

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 528 GLMNDKFTANLVPSEGGNGNLRKMQKIQTDKM------MDGKSSTLIDVYHNLNTEVGLK 581

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 582 SSTANRLASVARLEHEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 641

Query: 475 LLEG 478
           +L+ 
Sbjct: 642 ILQL 645


>gi|219685755|ref|ZP_03540566.1| flagellar hook protein FlgE [Borrelia garinii Far04]
 gi|219672694|gb|EED29722.1| flagellar hook protein FlgE [Borrelia garinii Far04]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/490 (9%), Positives = 118/490 (24%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++++ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPIIEEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         + Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTIGFDNEGALASLNGQPGQKGDVLQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +           + +                             +        Q+  + S
Sbjct: 273 ITFNVVGANVGEAGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|152975165|ref|YP_001374682.1| flagellar hook protein FlgE [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023917|gb|ABS21687.1| protein of unknown function DUF1078 domain protein [Bacillus
           cytotoxicus NVH 391-98]
          Length = 467

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/492 (9%), Positives = 123/492 (25%), Gaps = 39/492 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58
           ++     + +  +      +    NI NA    Y ++  +       +         ++ 
Sbjct: 1   MIKSLYTSISGMSAMQNALSVTSNNIANAQTVGYKKQKAVFDDLLYNNTVGAKGDDTKAG 60

Query: 59  NKN--------MFDKVLHAHSSAIGQQRLLQSFEALKEMMS--ADDHYNNSPTHYISKLR 108
                              +  +I    +               D   N           
Sbjct: 61  TNPKSIGNGVKFSGTSTDYNGGSITMTGINGQVAIEGNGFFVVGDSQGNGVQYTRKGTFG 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            S  +Y  N     +    +D   +   +          I       I+ E+S+    + 
Sbjct: 121 KSENNYIVNGEGQYVLAYKLDEDGKPDTSHPA-----GPISIPLGSAIDGEVSSKGSLIG 175

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L+  N  I                 +     I+  + I  +    +  +   +DG  + 
Sbjct: 176 NLSRDNKKIIHDFPV----------FNKSGDNITMRVQIEQVTELVDPDLPIGADGKPIL 225

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +    +               +     S N+    P    KA  + + ++    + 
Sbjct: 226 PKDDKGNPIKPEKVEKPVPGKYKYTVLTRNNSKNEKEFTPIADDKAPGEKKPTLTKTLEF 285

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                          +DP+           +  G +             +       +  
Sbjct: 286 DPITGKLTRTDEAVVRDPVT--------KEVIKGGQVDIPFGGDTFKLNLSQLTNLPTKD 337

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +      +     +     ++    ++  Y D+  +      VA       L++      
Sbjct: 338 TLDHKDVNGRAAAVAMDYKISDNGYVMVTYSDNSTRAVSQLAVATFKNQDGLMKVGNG-- 395

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            ++    +    + +  Q     I         V+L  E   L+  ++ +  + K+I  +
Sbjct: 396 NYVPTASAGDPFIGVAEQNGAGKIIGGAQEGSNVDLSVEFVDLMLYQRGFQGNAKVIKVS 455

Query: 469 DKMLQTLLEGVK 480
           D +L  ++  ++
Sbjct: 456 DDVLNEVVNLIR 467


>gi|332162895|ref|YP_004299472.1| flagellar hook-associated protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667125|gb|ADZ43769.1| Flagellar hook-associated protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 456

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 152/481 (31%), Gaps = 41/481 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58
            AQ+    A    ++   N+ NA+   Y R+    +               V V   +  
Sbjct: 6   IAQSGLQAAQAGLSAAAMNLSNANTPGYSRQRAEQSAVGTTGNNAYSAGNGVNVDAFKRL 65

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           ++          SS        Q+  +  E    DD  N      +    +SL S S N 
Sbjct: 66  SEQYLVSEEWKASSDHHYFSASQNALSKLEYSLGDD--NTGVAAGMRAFFNSLSSASNNP 123

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S     + VI+ A+ +V NFN+  +  QK + D   +    IS +      +   N  I 
Sbjct: 124 SSPAYREQVINEAKSLVLNFNSFHQSAQKQKQDIATQRTALISQVNSATKSIDEYNQKIV 183

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +   + +   DQRD L++K+SE++ I      +    +   +G  L           
Sbjct: 184 KLGSDGTNTNILQDQRDQLVKKLSEMVDIHVTKGADGGYDISLKNGLPLINGQTVATLAL 243

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              S     + +         SS          + ++      ++   ++ +  MA +L 
Sbjct: 244 NTGSAQPQIDIH------FANSSTAIDMSCGASLGSINDYEQGLLKQTESIVQGMAELLT 297

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              + +     +     G  +          +                            
Sbjct: 298 TEVNNQLAAGYDLNGATGKALFAFDATNTTGMLSVTDIKASEL----------------- 340

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                + K+  G    ++      +K      +     +    + +   +G +    S++
Sbjct: 341 --GFSDNKDNVGNATNLHKLLALKDKTITITGL----GSTKFSDASTALVGKVAFASSNN 394

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +++ V N    +  +  GV+  EE + +++  ++Y  + K+I   +++    L  
Sbjct: 395 QQSITRTKNVLNSAILNRDSLSGVDSDEEGNNILEYSKAYRANMKVISIGEQLFSDFLSL 454

Query: 479 V 479
           +
Sbjct: 455 I 455


>gi|70731823|ref|YP_261565.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5]
 gi|68346122|gb|AAY93728.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5]
          Length = 447

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 106/476 (22%), Gaps = 34/476 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---NKNM 62
            FN   +    A++Q      NI N     +               + +          +
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADVYSATKLGSGTQVIGNGVRL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +      +  I     +       +         +         +   E Y  N     
Sbjct: 62  ANVSQQFTNGDINNTGNVLDMGIQGQGFFVLSTNGSLTYTRAGTFKTDKEGYITNSDGTA 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +    +A   +         +  +R D          ++   +     +N        
Sbjct: 122 RLQGYAVDANGKI-----INGVLTDLRIDTSNLAPKPTDSISSTI----NLNSDSTPIDV 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                    +  D           +     N + M  Y        E     +   +   
Sbjct: 173 GATTPAYVFNPTDNTTYTKQFSTPVYDTQGNKHVMDQYMIKTPNANEWQTYTLIDGRNPD 232

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  + +N         S         GK+ ++          +    + +         
Sbjct: 233 GTAFTMAN--------QSPITMKFDSSGKLSSMTPPAAPGTTPYTITGNSIVMSAAAWTP 284

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   + N           D+          T  V  Q   +   +           
Sbjct: 285 GTVTNGVFTPNGAKPAPNGVSIDMTKTGSVFGESTRSVIAQNGYSTGQISSL-------- 336

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                + G   ++ ++ +   K      +A       L         W E   S      
Sbjct: 337 ----TIDGTGVMLANFSNEQTKPIGQISLASFTNEQGLQPVGG--TQWKETYSSGIPGYD 390

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I  +      VNL  EL  LIK + +Y  + K I     ++QT+++ 
Sbjct: 391 APKTGTLGAIQSNSLEESNVNLTNELVNLIKAQSNYQANAKTISTQSTIMQTIIQM 446


>gi|283780143|ref|YP_003370898.1| flagellar hook-associated protein FlgK [Pirellula staleyi DSM 6068]
 gi|283438596|gb|ADB17038.1| flagellar hook-associated protein FlgK [Pirellula staleyi DSM 6068]
          Length = 565

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 140/387 (36%), Gaps = 20/387 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------V 50
           M+LL+    A N    +      +  NI NA+   Y+R+  + T +P            V
Sbjct: 1   MTLLSTLQIANNSLIASQLGLQVVGNNIANANTPGYIRQQVVLTPAPTQRYGGLLLGLGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     +     ++ L +  S +      +      E +   +  +   +  ++    S
Sbjct: 61  EVQAVIQQTDRFLEERLRSALSDLASGEAQEKTYVQLESLLG-ELSDTDLSTALTDFFGS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++        + +    +   + +  + +     V ++R D + +I+     +   ++E+
Sbjct: 120 VQDILNQPDSESVRNLAVLQGQSLAADISRMHERVGQLRTDINTQIDQTAVEINGHINEI 179

Query: 171 TVVNDAIKFKTASKH---DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N  I           DA    D+R ++L ++++I+ I+ I +   D+ VY      +
Sbjct: 180 AKLNVQILQAEGGGTSASDAVGLRDRRSIVLNELAQILDITAIEQPTGDVSVYVGGDYLV 239

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
           F+   R +  E+      T     +      + ++       GK+  L+  RD+++  F 
Sbjct: 240 FQGTARPVTIEQTTDRGQTVSRIKL------IETDAPLFSSSGKLAGLVTSRDAILGGFL 293

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           + L++ A  L+  F++             +     + +++  L +   +    +  +   
Sbjct: 294 DSLNDFATTLVSEFNKVYSQGQGLSGYSQITSEFAVDNVEASLDEAGLKFSANSGSFDIL 353

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDL 374
               + G S + +   ++  L     L
Sbjct: 354 VRNKQTGLSETTQIQVDLNGLDDDTSL 380


>gi|298529920|ref|ZP_07017322.1| flagellar hook-associated protein FlgK [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509294|gb|EFI33198.1| flagellar hook-associated protein FlgK [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 701

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 125/387 (32%), Gaps = 16/387 (4%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS + A+ N  +           +   NI N + + Y RR+     +             
Sbjct: 1   MSGIHALMNSGRTALFANQSAIQTTGNNIANVNTEGYRRREVRLEEAMALDTAPGQIGTG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V          +  +   +  SS     + +    +  E +  ++         ++    
Sbjct: 61  VNAKEVFRHFDSFIETQYNDKSSDREMWQTMHEQLSSLEALF-NESREGRMNEALADFWK 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +  SK   ++ +   ++ N   + Q F +  +++ K R   D+ I  ++  +   L E
Sbjct: 120 DWQELSKRPDDNNVRTALLGNTGNLTQAFRSMDQDLTKNREQMDEFISQDVDRVNDILEE 179

Query: 170 LTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +  +N  I  +      + ++  D+RD+L+++++E + I+ + +   D+ + T  G TL 
Sbjct: 180 IAEINKLINVREVPGKVNLNELRDKRDLLVRELAEKVDINYMDKGGGDVTIQTKAGHTLV 239

Query: 229 ETVPR---DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           E            K  S   +     I  +G             G+I    + + S+   
Sbjct: 240 EGSETYRLKFEDSKTFSDLKSDFDGQIKYNGDSGYEFTIQVTEDGEIGGDAKFKVSLDGG 299

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                D+       S  + D       +   ++  D   +   +  +             
Sbjct: 300 KNWLTDDQGNTREFSAEDYDNRVTLPVDDMEIWFDDYSNNALAEGDEFTIVPKSGLYWES 359

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYP 372
           +  S +     V      N + L G  
Sbjct: 360 NTSSDMNITPQVMGDGNLNERRLTGGS 386



 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/389 (11%), Positives = 109/389 (28%), Gaps = 1/389 (0%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
            + + Y+N  T  +  +    + YS N   +    T++  +    ++  +S   +     
Sbjct: 313 FSAEDYDNRVTLPVDDMEIWFDDYSNNALAEGDEFTIVPKSGLYWESNTSSDMNITPQVM 372

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                 E  ++            + A K+       A     + + +    + +  +   
Sbjct: 373 GDGNLNERRLTGGSLAGYFNFRDHYAGKYSEKLDALAESLAWEVNRIHSNGAGLEHMKYA 432

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                   +  + GT        +       +     E   +        +         
Sbjct: 433 EGTYQVNNLEAALGTPNAGLPHGEKLQNGNFTVHFYDEDGEVESMSPKFPTQDEMGNDPE 492

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                       +      ++E+  +     + +  I+ + +                 +
Sbjct: 493 DWTGNFDPDKHGLDHVMRAINELDNISAEPVNNRLTISADDDYEFSFSDDSTGLLAGLGI 552

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                     +                +       +   G      +  +  ++      
Sbjct: 553 NTFFQGHDASSLAVNEKVRDNIAH-INAGSVNGAGEANVGDNTTAKNIAELQDRKVDITT 611

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
                T+ T+ EY  +  G +  + S +      ++ + + +        GVNL EE+S 
Sbjct: 612 SFEGTTSQTIQEYYNSLSGNVGSDTSMTKFNADYNKSLTDDLDRRQQEKSGVNLDEEMSN 671

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           LIK + SY  + ++I   D+M+QTLL   
Sbjct: 672 LIKYQHSYQAAARMISTADQMMQTLLGLK 700


>gi|318604259|emb|CBY25757.1| flagellar hook-associated protein FlgK [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 456

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/481 (14%), Positives = 153/481 (31%), Gaps = 41/481 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58
            AQ+    A    ++   N+ NA+   Y R+    +               V V   +  
Sbjct: 6   IAQSGLQAAQAGLSAAAMNLSNANTPGYSRQRAEQSAVGTTGNNAYSAGNGVNVDAFKRL 65

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           ++          SS        Q+  +  E    DD  N      +    +SL S S N 
Sbjct: 66  SEQYLVSEEWKASSDHHYFSASQNALSKLEYSLGDD--NTGVAAGMRAFFNSLSSASNNP 123

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S     + VI+ A+ +V NFN+  +  QK + D   +    IS +      +   N  I 
Sbjct: 124 SSPAYREQVINEAKSLVLNFNSFHQSAQKQKQDIATQRTALISQVNSATKSIDEYNQKIV 183

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +   + +   DQRD L++K+SE++ I      +    +   +G  L           
Sbjct: 184 KLGSDGTNTNILQDQRDQLVKKLSEMVDIHVTKGADGGYDISLKNGLPLINGQTVATLAL 243

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              S     + +         +S   +      + ++      ++   ++ +  MA +L 
Sbjct: 244 NTGSAQPQIDLH------FAGNSTAINMSCGASLGSINDYEQGLLKQTESIVQGMAELLT 297

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              + +     +     G  +          +                            
Sbjct: 298 TEVNNQLAAGYDLNGATGKALFAFDATNTTGMLSVTDIKASEL----------------- 340

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                + K+  G    ++      +K      +     +    + +   +G +    S++
Sbjct: 341 --GFSDNKDNVGNATNLHKLLALKDKTITITGL----GSTKFSDASTALVGKVAFASSNN 394

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +++ V N    +  +  GV+  EE + +++  ++Y  + K+I   +++    L  
Sbjct: 395 QQSITRTKNVLNSAILNRDSLSGVDSDEEGNNILEYSKAYRANMKVISIGEQLFSDFLSL 454

Query: 479 V 479
           +
Sbjct: 455 I 455


>gi|251789174|ref|YP_003003895.1| flagellar hook-associated protein FlgK [Dickeya zeae Ech1591]
 gi|247537795|gb|ACT06416.1| flagellar hook-associated protein FlgK [Dickeya zeae Ech1591]
          Length = 640

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 163/437 (37%), Gaps = 15/437 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N   +  + A    +++  NI N     Y R++ +   +             VTV
Sbjct: 1   MSNLINTGMSGLSAAQAALSTVSNNISNQAVAGYSRQNALLAQNNGTNVSAGYIGNGVTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +  +   K L +  +          +E + ++ +     ++S +  I     +L+
Sbjct: 61  VSINRDYNDFVSKQLRSAQTTSS--STAAYYEQISKIDNLLSSSSSSLSTNIQDFFKNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S+  + +TV+  A  +V  F  + + ++ +  + + EI + +S +  +  ++  
Sbjct: 119 NLTSNSSDSSVRQTVLGKASALVNQFKITDQYLRDMDTNINGEISVTVSQINTYAKQIAD 178

Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I       +    +D LDQRD L+  +++++GI   V++ +   +   +G TL + 
Sbjct: 179 INDQIVRLKGANNGASPNDLLDQRDNLVNDLNKLVGIDVAVQDGDVYNISLKNGLTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +         +S  + SA+  G +  LL  R S +   +NQL
Sbjct: 239 KNFNTLAATPSSTDPTRTTVSYNDTIAGLSEVKESAITGGSLGGLLNFRTSTLDSARNQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +MA     +F+++  +  +  NV G         +  K          +   Y ++   
Sbjct: 299 GQMALSFADAFNQQHKLGFDLNNVQGGDFFGVGSSVTLKSANNT-SAAELTSAYLNDTYS 357

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L+  G+       +  + +          D F  +      +G   +  +     +    
Sbjct: 358 LQYNGTSWSVTRSDGTSASSTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGKTSISQT 417

Query: 411 LEKNRSDSHDLHMKSQV 427
                + +  L      
Sbjct: 418 APTGSTSAASLTRNDSN 434



 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/401 (11%), Positives = 98/401 (24%), Gaps = 4/401 (0%)

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
             L +  +  +       YN++          ++   S     +    T+     ++ Q 
Sbjct: 242 NTLAATPSSTDPTRTTVSYNDTIAGLSEVKESAITGGSLGGLLNFRTSTLDSARNQLGQM 301

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
             + A    +          ++  +     S +T+ +              +        
Sbjct: 302 ALSFADAFNQQHKLGFDLNNVQGGDFFGVGSSVTLKSANNTSAAELTSAYLNDTYSLQYN 361

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               S      T   +       T DG T+  +             +    S        
Sbjct: 362 GTSWSVTRSDGTSASSTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGKTSISQTAPTG 421

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
             S+   +      IKA       V P   +             S     A +      L
Sbjct: 422 STSAASLTRNDSNYIKASDYNVKFVGPSASDWSITRLSDGANLSSSATYTAASGSTPASL 481

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                  D+           +        + S      S        + +  G      +
Sbjct: 482 IFDGMKLDITGTPAAKDLFMVKGVRDVIVDMSVKVTDSSKIAAAGAPLTSAGGGVSDNTN 541

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                N          +    ++ +   + +G +    S +       + V   ++    
Sbjct: 542 AKALLNLQ----TAKVVENKSSVSQAYASLVGDIGNKTSTAKVTDTSQKNVVKQLTTEQQ 597

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +  GVNL EE   L++ +Q Y  + K+I     +   LL  
Sbjct: 598 SVSGVNLDEEYGNLVRFQQYYMANAKVIQTASTIFDALLAI 638


>gi|120613066|ref|YP_972744.1| flagellar hook-associated protein FlgK [Acidovorax citrulli
           AAC00-1]
 gi|120591530|gb|ABM34970.1| flagellar hook-associated protein FlgK [Acidovorax citrulli
           AAC00-1]
          Length = 642

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/455 (11%), Positives = 135/455 (29%), Gaps = 19/455 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N +   Y R+                  + V V T
Sbjct: 2   SLLNVGARALLANQVALQTTGHNIANVNTAGYSRQTLSLQTVQGQFTGGGYIGQGVDVQT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
               +  +  +   A  S     +      +  + +       +     I+ + +S +  
Sbjct: 62  ILRNHNELLTRQAAAADSVQASDKTRAERLSQMQDVFG--GGTSGLGAAITDMLNSFKDV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             +  +       I   +E      +SA  + +I+    +++  +++ L     ++  VN
Sbjct: 120 VASPMDMTARTVSITRMDETAARMRSSAGRLDEIQYTVKEQLTGDVNALNALSKQMASVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           + I     +    +D LDQRD ++++I+  +  + +  ++  + ++ +    L       
Sbjct: 180 EQIARVKGNGQTPNDLLDQRDQIIREINRYVQTTQVAADDGTVGLFVAGSQPLVLGTTAT 239

Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               + +S    S    ++    G+         +  G++  LL+  ++ +   +N L  
Sbjct: 240 PLQVQESSMFPGSGQLKVYFSPPGIKPIELDDGMLGGGELSGLLRFHNNDLAEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPS 349
           MA+ +  + + +  +    +   G  +      +          T+          S+  
Sbjct: 300 MAQAIGMTMNAQHKLGLTLDGEAGKDLFTVPASMPGYTNGTAVGTVAFTDATKFAASDYE 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                    +    +      +  L N      +        AG      +     ++  
Sbjct: 360 VRFTTPPAGQVVRLSDGKATAFTSLANLAGQQIDGLTFNLTTAGATGERVMFRPFSSAAR 419

Query: 410 WLEKNRSDSHDLHMKS--QVVFNHISESYSNTVGV 442
            +E       DL   S         +        V
Sbjct: 420 DIEAKVLSPRDLAAASPVNASMGAANAGSLQLSSV 454



 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 57/193 (29%), Gaps = 1/193 (0%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +        +   P         G     G+                       + 
Sbjct: 450 QLSSVKAATSPYTAPPTPGGVTLTFTAGPPSTYGVTGSTVPASGTTGLAYTPGQPITIDG 509

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNS 407
             +   G+        V N+        +  ++ N           +  + T+ +     
Sbjct: 510 WQITLKGTPGTGDTVKVGNVLDAQYGDAYKRNAGNASAIDALGDVKMFDDATMSDGYAGL 569

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +     ++      S  +  ++    +   GVNL EE + LI+ +Q+Y  S K++  
Sbjct: 570 MAQVGTRMQNAKYASDVSATISTNLERDRTAVSGVNLDEEAAKLIQYQQAYQASAKVLQI 629

Query: 468 TDKMLQTLLEGVK 480
              +   L++ ++
Sbjct: 630 AQSIFDNLIQTMR 642


>gi|26991070|ref|NP_746495.1| flagellar hook-associated protein FlgK [Pseudomonas putida KT2440]
 gi|24986104|gb|AAN69959.1|AE016634_8 flagellar hook-associated protein FlgK [Pseudomonas putida KT2440]
          Length = 680

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 143/404 (35%), Gaps = 15/404 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ +   +  + +    +    NI NA    Y R+ T+                  T+
Sbjct: 1   MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTVQAAGPSHNIGAGFLGTGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   +S        Q      + + AD   +   +  ++    +L+
Sbjct: 61  ADVRRIYSSYLDNQLQTATSLQADSVTFQDQITSVDKLLAD--RDTGISSVLTAFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +    +    + ++  A+ +   FN  + ++ +  A  + +++     + +  + +  
Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTANIAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N  I   +AS +  +  LD R   +++++E++G++   R + +  VY   G +L     
Sbjct: 179 YNKQITAASASGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTK 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +    +            + I+    SS+  S V  G I  LL+ R  V+    N+L  
Sbjct: 238 ANTLSVEPGV--ADKSQVALRINYDSFSSDVTSVVSGGAIGGLLRYRQDVLTPSMNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+  S + +     ++    G  +   I        + ++ +         + +   
Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIAN 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            G   +  +     + + Y    +   D  + +   DP   I+ 
Sbjct: 356 SGALTTYDYEVKFTSASQYSVRRSDGTDMGSFDLNADPAPVIDG 399



 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 68/256 (26%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G+        +               N         +  +   +  G   AL+Q      
Sbjct: 425 GSITTTLTDANKLAFAGPISAAAGSGNSGTGTITQPTLGESLDIYGGADTALIQQSIRDS 484

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +   D  +    G                     + +      L       +  +  
Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGQDNKLSIAVPMLDAAGDPILDGSGN 544

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            R+       GGS +    + +   A       +     +            T  +    
Sbjct: 545 PRTFAVETTIGGSPAANDSFTLSFNADGKADNRNANALLDLQTKSTVGTNSGTGTSFTSA 604

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +    S +      +Q V    +ES S   GVNL +E + L+K +  Y  S++
Sbjct: 605 YASLVERVGAKASQATIDTTATQAVLKSATESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664

Query: 464 LIMFTDKMLQTLLEGV 479
           +I    +   TL+  +
Sbjct: 665 IIKAAQETFSTLINAL 680


>gi|320538206|ref|ZP_08038101.1| fagellar hook-basal body protein [Treponema phagedenis F0421]
 gi|320145023|gb|EFW36744.1| fagellar hook-basal body protein [Treponema phagedenis F0421]
          Length = 452

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/480 (9%), Positives = 114/480 (23%), Gaps = 41/480 (8%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR-------------SENK 60
             N   +   I  N+ N +   + R                 R                 
Sbjct: 1   MQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVGGVNPKEVGLGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +          A+    +                   S            +    N + 
Sbjct: 61  MVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTRAGAFGVDRDGTLVNPAN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  +   +   Q    ++ + + +     ++I+ + +    +   L      +   
Sbjct: 121 GMRVQGWMAE-DIEGQQIINTSDQTEDLIIPIGQKIDAKATTDVAYACNLDKRLPELPEG 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                      +Q D+L    +    +       + + +  S            +N +  
Sbjct: 180 ----------ANQADILRSTWATDFNVYDTFGEQHKLQMVFSRVPGTNNQWLATVNVDPE 229

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           N     +       DG   +                   +   P  Q        VL+ +
Sbjct: 230 NQAGTETRVGIGTTDGTENTFIVSFDNYGHLASVTDTAGNVTAPAGQ--------VLVQA 281

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                    +    P     +            I        Q+    +           
Sbjct: 282 SYNVVGANPDEGGAPTRHTFNINLGEIGTSRNTI-------TQFAERSTTKAYQQDGYAM 334

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +  ++      +AG      L +   N   +++ N S   +
Sbjct: 335 GYLENFKIDQSGIITGVYSNGASREIGQLALAGFANQGGLEKAGEN--TYIQSNNSGIAN 392

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +   +    +         V+L ++ + +I  ++ +    K I  +D ML+T+L   +
Sbjct: 393 ITVSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSDTMLETVLNLKR 452


>gi|70729010|ref|YP_258744.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens
           Pf-5]
 gi|68343309|gb|AAY90915.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens
           Pf-5]
          Length = 683

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 136/403 (33%), Gaps = 16/403 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ N   +    +     +   NI NAD   Y R+ T+                  T+  
Sbjct: 2   SLLNIGMSGLAASQTSLMTTGNNIANADTAGYSRQQTVQGTKASSQNGNVFIGTGTTLAD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R    +  D  L   +S        Q   +  + + +D       T  ++K   S+++ 
Sbjct: 62  VRRVYNSFLDAQLRTATSLNSDAAAFQGQISPIDQLLSD--SGTGMTGALTKFFASVQNL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   +++   + ++ + + +   FN+ + ++ +   + +  +      + +  + +  +N
Sbjct: 120 NAKPTDEASRQLLLSDTQALSNRFNSVSSQLNQQNTNINGNLANMADQVNKLANTVAQLN 179

Query: 175 DAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             I   + + +   +D LD R+  ++++S  IG+    R +  + +Y   G  L      
Sbjct: 180 QKISELSTNGNGMPNDLLDARNETVRQLSTFIGVQVSERGS-SVDLYLGSGQPLVMGNSA 238

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           +           +   + + ++    S +  +    G+I  LL+ R  V+    N+L  +
Sbjct: 239 NTLEVVQGKNDPSR--SALQLNRGSSSIDITNLTTGGEIGGLLRYRSEVLDPAMNELGRV 296

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A V+    +       +     G  + + I        + I            + +    
Sbjct: 297 ALVVADQMNSLMAQGIDKNGDFGGNLFNDINSARMISQRSIGSATNSAGSGNFDVTIKDT 356

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           G   +  +     +   Y    +   D  + +    P   I+ 
Sbjct: 357 GKLSTSDYTVTFSSATDYSVKRSDGTDMGSFSTTTSPAPVIDG 399



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 57/175 (32%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           + +   S         +   ++ +     I++                 G   +   +  
Sbjct: 509 NKMGSGSIVPGQTNTLNLQINMLDASGAPITDGGTPPVTKTFGVQMTVAGAPAAGDSMNI 568

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
             N AG  D  N    +  ++         +  +TL++     I  +    S        
Sbjct: 569 SVNGAGSSDNRNGLALAGLQSKQTVDTGSASKGITLVDAYGKLIENVGAKASQGSLDSAA 628

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  +  +   +  +  GVNL +E   L+K +Q Y  S+++I    +   TL+  +
Sbjct: 629 TGTILANAKGARDSLSGVNLDDETGNLVKFQQYYTASSQIIKAAQETFSTLINSL 683


>gi|15594628|ref|NP_212417.1| flagellar hook protein FlgE [Borrelia burgdorferi B31]
 gi|223889009|ref|ZP_03623600.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b]
 gi|226321601|ref|ZP_03797127.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26]
 gi|2494528|sp|Q44767|FLGE_BORBU RecName: Full=Flagellar hook protein flgE
 gi|1165267|gb|AAA85606.1| FlgE [Borrelia burgdorferi]
 gi|2688183|gb|AAC66665.1| flagellar hook protein (flgE) [Borrelia burgdorferi B31]
 gi|223885825|gb|EEF56924.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b]
 gi|226232790|gb|EEH31543.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26]
          Length = 442

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 115/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGANPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|229827759|ref|ZP_04453828.1| hypothetical protein GCWU000182_03151 [Abiotrophia defectiva ATCC
           49176]
 gi|229787958|gb|EEP24072.1| hypothetical protein GCWU000182_03151 [Abiotrophia defectiva ATCC
           49176]
          Length = 633

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 103/305 (33%), Gaps = 25/305 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------S 46
           M L+  F    +  N A     +   NI NAD K YVR+  +T                +
Sbjct: 1   MGLMTSFGVGVSGLNAAQNSLNATAHNITNADTKGYVRQQVLTVDKEYAKTATVRGMDQT 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                +   R       D      S   G  +         E +   +    +    +  
Sbjct: 61  GHGTIIDKIRQLRDRFLDAAYRKESGRHGFYQAQAEAITEVENLFG-ELEGTTFQSSMEG 119

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           L  +++   K     +    +++ A   ++   + + +++    D + +++  +  +   
Sbjct: 120 LWKAVQELQKEPESKVARTALVETANTFIERCQSISTQLKSFSQDLNLKVKNTVDRINTI 179

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
              +  +N  I+ + A + +A+D+ D+R+ LL ++   + +S     +  ++V       
Sbjct: 180 GKRIDELNTLIRKEEAGEQEANDYRDERNKLLDELGGYVKMSYKEVRDGTILVTVEGTQF 239

Query: 227 LFETVPRDI----------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           + E    +I              + ++    +  P  +    V     +    G +K LL
Sbjct: 240 VTEFGVNEIGLKTTDDGLNLHTPVWNFDTNDDGEPREVFNFSVPPTAAADTDIGSLKGLL 299

Query: 277 QIRDS 281
             R +
Sbjct: 300 LSRGT 304



 Score = 86.2 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 99/392 (25%), Gaps = 16/392 (4%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           T ++++   +            L   V +                    A AD +I    
Sbjct: 237 TQFVTEFGVNEIGLKTTDDGLNLHTPVWNFDTNDDGEPREVFNFSVPPTAAADTDIGSLK 296

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL-------QKISEIIGISTIVRN 213
             L    ++    +  ++ K     +  +       +           +           
Sbjct: 297 GLLLSRGTQGRYTDIPVQPKPEDYENGEEDEYYISAMRAFEEAKTNYNNRTAPSLLTNTE 356

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
                +     T + + +  ++     +  T    ++   I                   
Sbjct: 357 AQFDQLIHGLTTMINDVLAPNLTATWTDGGTPIWRNSEGKILEGDEIPPIDIDDLDEYKI 416

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                       ++  + +     + S S K P     E        +   ++D K    
Sbjct: 417 EEKDALGKPTGRYKVSILDTKNAPVSSDSSKTPGNALFERKSRPRYKELDLEMDGKKVML 476

Query: 334 ISETICVNPQYRSNPSFLRD---------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            +          S  S               +VS   L    N   Y        +    
Sbjct: 477 YNSEDYDPNNEDSKYSMYSMGELEVNKNIRENVSLIPLSYNTNTGDYSMDTAAKLNKIWD 536

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                      T   ++EY  +    +         L     V    +       +GV+ 
Sbjct: 537 KKFAVLNPNTLTKNDIMEYYTSFTSEIANTGHTRKALAKSQDVTKTSVDNQRQQVLGVSS 596

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            EEL+ +IK +Q++N +++ I   D+ML+ ++
Sbjct: 597 DEELTHMIKFQQAFNAASRYITVIDEMLEHVV 628


>gi|146281777|ref|YP_001171930.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri A1501]
 gi|145569982|gb|ABP79088.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri A1501]
          Length = 669

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 139/417 (33%), Gaps = 15/417 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ +   +  + +    A+   NI N D   Y R+  +                  TV
Sbjct: 1   MASLISIGLSGLSASQTALATTGNNIANVDTAGYSRQSVVQKSASAEFIGVGYVGNGTTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       +  L   +    + +   +     + + AD       +  +S   ++L+
Sbjct: 61  ADVRRIYSEYLNTQLRTSTGLDAEAQTYLTQINQTDALLAD--STTGISSVLSSFFEALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + ++N ++      ++ NA  + + F++   ++       + ++      + +  S +  
Sbjct: 119 TAAENPTDASARALLLTNASGLAERFSSVYSQLADQNTYINSQLSSMAEQVNQLASSIAN 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N AI   +AS    +D LD RD  L  +SE+IG++ ++  N +  V+   G  L     
Sbjct: 179 YNQAIVQASASGATPNDLLDARDQALVDLSELIGVTVVMEGN-NANVFIGSGQPLVMGNT 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 + ++   T     + +     S +  S V  G I  L++ R+ V+    N+L  
Sbjct: 238 ASTLTAEPSTTDPTRL--NLMLTSGYSSVDVTSVVSGGSISGLVRYREEVLDPTLNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+    + +     +     G  +   I        + +++          +     
Sbjct: 296 LALVIADQVNSQLGQGIDLNGDFGTSLFSDINSALAASQRSLAQAGNSAGSGNLSVYIED 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     +  GY               + D  A +    +L   A     
Sbjct: 356 SSKLSTSDYEVTFSSATGYSVRRLSDGADLGSYDLSDDPAPVIDGFSLAMEAGTVAA 412



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 82/303 (27%), Gaps = 1/303 (0%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            + F +A+ +      D  D+    +S+         +        + G        R  
Sbjct: 365 EVTFSSATGYSVRRLSDGADLGSYDLSDDPAPVIDGFSLAMEAGTVAAGDKFTIIPTRTA 424

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                   T  S+           SS          +         +     N   + + 
Sbjct: 425 AGSIGVVMTDASKLAFAAPLVATSSSGNYGTGSISSVALASGSALDIYDAAANADTQASI 484

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                       A  S     L+   G       +  G S T+ V+              
Sbjct: 485 QNAMPVKLVFDAASGSAQGYTLYDVQGNALGTGSIVPGQSNTVTVSIAANPPSVPSAFEF 544

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-PVAGINTNVTLLEYARNSIGWLEKN 414
            ++        +        +   D+ N   + D   A      ++       I  +   
Sbjct: 545 ELAISGSPAAGDSFTVAFNADSDSDNRNALALLDLQTASTIGKHSITSTYSQLIETVGAK 604

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +      +  + +  + +  +  GVNL EE + LIK +Q Y  + ++I    +M  T
Sbjct: 605 ASQAALDASATSTILSQATANRESVSGVNLDEEAANLIKFQQYYTAAAQVIKAAQQMFDT 664

Query: 475 LLE 477
           ++ 
Sbjct: 665 IIN 667


>gi|216264643|ref|ZP_03436635.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a]
 gi|215981116|gb|EEC21923.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a]
          Length = 442

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 116/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +           + +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEAGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|90423518|ref|YP_531888.1| flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
 gi|90105532|gb|ABD87569.1| Flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
          Length = 618

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 140/448 (31%), Gaps = 27/448 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSEN 59
           L   F+ A      A +    + +N+ NA    YVRR   T  S      V V T     
Sbjct: 2   LTTAFSTAVAGLEAAQKAIRVVSQNVGNAGTAGYVRRTVTTVASGPGNSSVAVGTVNRVF 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
           ++   K L   +S         +  +  + +        +    ++    SL+  + + S
Sbjct: 62  EDAALKQLRLEASGAAYSSTKSNVLSQLDKLFGKPGDATALDGRMNAFTQSLQGLATDPS 121

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                 TV++ A  + +   + A  VQ++R+  +  +  ++      L  +  +N  +  
Sbjct: 122 SVASRSTVLNKAAALTERIRSLAGNVQELRSGIENRLGSDVGAANNLLKSIASLNAKLAA 181

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN--- 236
            +     A   LDQRD  + ++S  + + ++ + +  M + T+ G  L +          
Sbjct: 182 TSDDSAQA-GLLDQRDQQITQLSSYLDVKSMQQRDGAMTLMTTSGVVLVDRDAAATLSFD 240

Query: 237 ----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
                     +    S             G V+      A+  G I A L++RD  +P+ 
Sbjct: 241 GRGNLGPTSAYSTDPSARGVGTITATLPGGAVIDLGVRGALSSGSIAAQLELRDVALPLA 300

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET--------- 337
           Q +LD++A  L  S ++K  +   S     L +AD                         
Sbjct: 301 QRRLDDLAFGLAQSLTDKSAVGTQSAAGVDLNLADLASLKPGNTITIPISAGGAIRNVIL 360

Query: 338 -ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                     + +   D  +  + F                              +  + 
Sbjct: 361 VASSLASRPVDANQTIDANAQVQTFTIPAAPATARDYATAISAALSVVAPGLTAASTTSG 420

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            +TL       +  +      + D+   
Sbjct: 421 KLTLSGAGIQGVVAISTQPKSAGDVSGA 448



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/429 (9%), Positives = 106/429 (24%), Gaps = 12/429 (2%)

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK-NL 118
           +           + +     ++S +     M+             +    S +       
Sbjct: 188 QAGLLDQRDQQITQLSSYLDVKSMQQRDGAMTLMTTSGVVLVDRDAAATLSFDGRGNLGP 247

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +              +       A     +R             LR     L        
Sbjct: 248 TSAYSTDPSARGVGTITATLPGGAVIDLGVRGALSSGSIAAQLELRDVALPLAQRRLDDL 307

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
               ++                   +  ++++   N   +  ++ G      +       
Sbjct: 308 AFGLAQSLTDKSAVGTQSAAGVDLNLADLASLKPGNTITIPISAGGAIRNVILVASSLAS 367

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA---- 294
           +      T ++N       + ++   +      I A L +    +        ++     
Sbjct: 368 RPVDANQTIDANAQVQTFTIPAAPATARDYATAISAALSVVAPGLTAASTTSGKLTLSGA 427

Query: 295 --RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             + ++   ++       S   P + +                         R + +   
Sbjct: 428 GIQGVVAISTQPKSAGDVSGAHPWIAMFVDGLGNALVTGSLDGAPQRTGLAQRLSVNAAL 487

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-----TLLEYARNS 407
            G S          +          Y    +    F  V GI         T+  +A+  
Sbjct: 488 IGDSSVLVAASRTSSSPNPSRPQFVYDALTSSKLAFSSVNGIGGTQAPHVATVAAFAQEI 547

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +       + +  +     V        +S + GVN+ EE+S L+ ++ +Y  + +++  
Sbjct: 548 VAAQGSAAAAAKQIDDGQTVALGVAQGRFSKSAGVNIDEEMSRLMSLQTAYAANARVLSA 607

Query: 468 TDKMLQTLL 476
             +ML  L+
Sbjct: 608 VREMLDVLM 616


>gi|224534234|ref|ZP_03674812.1| flagellar hook protein FlgE [Borrelia spielmanii A14S]
 gi|224514336|gb|EEF84652.1| flagellar hook protein FlgE [Borrelia spielmanii A14S]
          Length = 442

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 119/490 (24%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDVRG 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                  A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  ++Q+ +    I+      N  +  +    ++ E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPVIQEGASSADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L     +  P  +  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASL-----NGQPSQKGD 267

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           + ++      S +              L                +        Q+  + S
Sbjct: 268 ILQIPITFNVSEANVGEAGEQQTVNLKLGT--------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMESYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQARIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|260886641|ref|ZP_05897904.1| flagellar hook protein FlgE [Selenomonas sputigena ATCC 35185]
 gi|330839527|ref|YP_004414107.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC
           35185]
 gi|260863784|gb|EEX78284.1| flagellar hook protein FlgE [Selenomonas sputigena ATCC 35185]
 gi|329747291|gb|AEC00648.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC
           35185]
          Length = 496

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/503 (9%), Positives = 118/503 (23%), Gaps = 32/503 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53
           ++       +   +   +   I  NI N +   +         +                
Sbjct: 1   MMRSLFSGVSGLKSHQTRMDVIGNNIANVNTIGFKSSRVTFADTLYQTQSGAAAPTGTVG 60

Query: 54  -----------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         S ++   D    A                +       D Y      
Sbjct: 61  GTNPKQIGLGVGVASVDQLFGDASPQATGKNTDLALSGNGLFVVSRDAGGKDKY----YT 116

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                                      +    +    T      K    +         +
Sbjct: 117 RAGNFSFDANYNYVVPGSGYHVVGWNADENGSIDTKGTPTGIQIKDAMRSMGAKATTTIS 176

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
            +  ++       +I+ +T +   +   +D        ++   G +  V   ++    T 
Sbjct: 177 YKGNMNSSVPTITSIRNQTGAVVASPAKVDGVTNTSLTLTLSDGTTQTVTAKSNYEYRTK 236

Query: 223 DGTTLFETVPR-----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
               +           +++        V     P  +      S   +    G +  + Q
Sbjct: 237 CSMPITTIANVYDSLGNLHKVPFLFTKVPGSGTPPLMYDEWEVSLSPATTSGGTLDPVNQ 296

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                       +    + L    + K         +     A  I           +  
Sbjct: 297 CSIKEDDGSWTTVKMNKKTLKFDQNGKYVSGAGDPELTLQNGAGSISGSGTPSATMTATV 356

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              +    S    ++              N      L   Y +   +      VA  +  
Sbjct: 357 DLKSLTQYSGSDTIKADYDGHSAGTLKEINTDQSGILTGTYTNGEKRALAQVAVAQFDNA 416

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L +   N     E N S + ++   S +    ++ S      V++  E + ++  ++ 
Sbjct: 417 PGLTKAGANLYT--ESNNSGTANIKTVSALGL-TLTPSALEMSNVDVANEFADMVVTQRG 473

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  ++K+I   D+ML+T++   +
Sbjct: 474 FQSNSKVITVGDEMLETVINMKR 496


>gi|241766920|ref|ZP_04764726.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii
           2AN]
 gi|241362624|gb|EER58472.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii
           2AN]
          Length = 425

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 125/483 (25%), Gaps = 70/483 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVVTQR 56
            F +  +  N +S+    I  NI NA+   +                +    N  +  + 
Sbjct: 2   SFQQGLSGLNASSKNLDVIGHNIANANTTGFKASRAEFAEMVASAIGSAGGNNAGIGVET 61

Query: 57  S-ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L    +++        F  L++         +         +       
Sbjct: 62  ANVAQQFTQGNLTITGNSLDVAINGNGFFTLQQ------PDGSPAYTRAGNFKLDKTGNM 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                  +    +D    +                        E    ++    +   N 
Sbjct: 116 VTNDNAKVMGYPVDPLTGLRSGTAPVPMVF----------PTAEPIPAKQTTKIMAGFNL 165

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
             +   A+ +                +    I    R      +   D   + + V    
Sbjct: 166 DARAPDAAGNP---------------AATPPIPATPRATYGTSINVYDSQGVAKPVSLYF 210

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                N++ V  + +       VV++  G                           ++  
Sbjct: 211 QKNGANTWDVYDKLDDPKASPPVVATPIG---------------------------QIKF 243

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G+     P+A ++E++  L IA    + +      +   +    Q+ +  +      
Sbjct: 244 DNNGAIVSPAPVAPSTEHLLNLTIAPSPPNPNGLPTFPVDINLDKVTQFGTKFAVSDLTQ 303

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N+     ++  Y +   +      +A       L     N   W+E   
Sbjct: 304 DGYTAGELTGINVENNGMIMTRYSNGVTRAEGQLALASFRNTQGLAAVGGN--NWVETFE 361

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    L   +   F  +         V+L  EL  ++  +++Y  + + I   D+++ TL
Sbjct: 362 SGQPVLGTATDGNFGALRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTL 421

Query: 476 LEG 478
           +  
Sbjct: 422 VNL 424


>gi|86360903|ref|YP_472790.1| flagellar hook-associated protein FlgK [Rhizobium etli CFN 42]
 gi|86285005|gb|ABC94063.1| flagellar hook-associated protein [Rhizobium etli CFN 42]
          Length = 453

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 127/412 (30%), Positives = 212/412 (51%), Gaps = 8/412 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N  Q+I NN  QQ + +  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSALNSVQSIFNNTGQQSSVVSTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     ++    Q+ L +     + +   + Y  SP+ Y++  +++L++Y+ + S 
Sbjct: 61  TALLAQYLQSNAKDSAQQTLVTGLESLQSLMGGNDYETSPSTYLAAFQEALQTYATSPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               ++ +  A+++  + NT+   VQ IRA+AD EI  ++S L   LS+    N+A+K  
Sbjct: 121 TTAAQSAVTAAQDLANSLNTATDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T++  D    LD R+ LL++IS I+G++++VR+NNDM +YTSDGT LFET+PR + F   
Sbjct: 181 TSTGADTSTALDAREKLLKQISSIVGVTSVVRDNNDMALYTSDGTVLFETMPRTVTFAST 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +Y   +E N I+IDGV + + +GS     G ++ALLQ+RD + P FQ+QLD++A+ L+ 
Sbjct: 241 ATYVAGTEGNAIYIDGVALDAGEGSTTSASGSLQALLQLRDEIAPTFQDQLDQIAKALVQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKL------CQGISETICVNPQYRSNPSFLRD 353
            FSE D              +    +  +           IS    V      + + LRD
Sbjct: 301 VFSETDGSTSAPGLFTWTTASGTTGETPSDTDDVTGIASTISVNPAVVTSEGGDATKLRD 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            G++S     N    +G+ D ++    +  +   F   AG++T  +L +YA 
Sbjct: 361 -GTISGITNLNTSGDSGFSDNLDALYQALTEQRSFSADAGLSTTQSLRDYAS 411


>gi|224370754|ref|YP_002604918.1| putative flagellar hook-associated protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693471|gb|ACN16754.1| putative flagellar hook-associated protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 1268

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/450 (13%), Positives = 141/450 (31%), Gaps = 24/450 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
            + +  N AQ               NI N +N +Y  +      +             V+
Sbjct: 3   GISSTLNIAQGAIAAQQYGLNVTGNNIANVNNPDYSLQVADQKSNTPASYSGFLFGTGVS 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   +     + +  L    S+       +S+ ++ E    D+    S    + +   S 
Sbjct: 63  VDQIQQRVNQLLENRLTDAKSSQAAFEEAESYLSVVESFF-DESSETSINSIMGQFWTSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  S N         V D A+ + + FN+   ++  +R D + EI   +  +     ++ 
Sbjct: 122 QDLSNNPLGSSERVAVYDTAKNLTERFNSVNGDLAGLRTDLNSEISTTLGQINDITDQIA 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I         A+   D+R+ L+ ++  +I I+T  ++N  +++   +G +L    
Sbjct: 182 DINLEITGLE-LNKTANGQRDERNALVDELGTLININTFEQSNGAIIINAGNGFSLVNGG 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                           E   ++        +    +  GK+   L +RD ++P +Q  +D
Sbjct: 241 DNYAL--------SFDEDQVMWQGSYGSKVDISDKISGGKLGGWLDLRDEIIPKYQADID 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +I + + +              + +   D    L         ++         +
Sbjct: 293 VLAENMIWTMNYQHSQGAGLTYFTDPVVGEYQADDSGLLSSLAFGD-RIDYGEDFKMWIM 351

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              GS        V        + +    +         +  +    T+ +  R    + 
Sbjct: 352 DQSGSEPVYRSVEVDMGISEAAVSDWEGTALGSVQASYQLTVVEG-ATVGD--REVAEFD 408

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
               ++       S+ +   I+       G
Sbjct: 409 GSGLAEVQTGTSVSEALNLSIAGQTLTISG 438



 Score = 86.2 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/436 (10%), Positives = 117/436 (26%), Gaps = 21/436 (4%)

Query: 45   ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THY 103
                   V T     ++       + +     +   +      E     +    +     
Sbjct: 851  TVESGGKVGTLPEYGESPLVIRWTSSNGYGSFEIEGEDPPLTPETPFEVEVDGMTLVISD 910

Query: 104  ISKLRDSLESYSKNLSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEISN 162
             +     + + + + S + L          E + +++ +              I    + 
Sbjct: 911  GTLFTGDVFTITTDTSGNPLSTNGDGWPTGERLSDWHWTLDSFADQVNRTSSGISASATL 970

Query: 163  LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
              R   E                 +  + D  ++  +  S  +G        +       
Sbjct: 971  DNRLTFE----------------ASDTYHDVVNLSFENASGNVGFMAANTLVSVENYANL 1014

Query: 223  DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            D      T  R  + +       T  +  +  DG                   +  ++ +
Sbjct: 1015 DFEVQDLTFARADSGQWTVQNDPTGGNITLLPDGGDDDGFGIDFNGDEIADIKVSFKNKI 1074

Query: 283  VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                    D +              +G +  V  +  A             ++    +  
Sbjct: 1075 TGEGSLSFDLLKTDASELSFAFGDDSGTTAGV--MAAAGINTFFSGNDSMTMAVNHALLN 1132

Query: 343  QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                + + + +      +                   ++++ +   D  + +  + TL  
Sbjct: 1133 SNYISAAMINNETGEISQGDNRNALNLSDLQFKTIDMETWSYDRGVDAESSLTLS-TLDS 1191

Query: 403  YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
            Y +  IG L             S V+  ++++       V+L EE+  LIK + ++  ++
Sbjct: 1192 YYQRMIGSLGIKSRSIQSSRQFSDVMVTNLTDQRDAISAVSLDEEMINLIKYQHAFGAAS 1251

Query: 463  KLIMFTDKMLQTLLEG 478
            KL+  +D+ML TLL  
Sbjct: 1252 KLVTVSDEMLNTLLGM 1267


>gi|332525060|ref|ZP_08401240.1| flagellar hook-associated protein FlgK [Rubrivivax benzoatilyticus
           JA2]
 gi|332108349|gb|EGJ09573.1| flagellar hook-associated protein FlgK [Rubrivivax benzoatilyticus
           JA2]
          Length = 659

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 120/350 (34%), Gaps = 13/350 (3%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQR 56
            +        +         NI NA+   Y R+      +           + V V +  
Sbjct: 1   MSLGMRAMTASYASMQVTGHNISNANVPGYSRQQAELATAKGQYTGAGFFGKGVDVASVT 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +     +   +  S       L     L E +       +   + +    +++   + 
Sbjct: 61  RAHDQFLTRAAASAKSLAAMDETLSQRLQLLEDVF--PTGESGLGYSVGNFLNAMVDLAS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
              +    + V+  A+++   FN +A ++  ++A    +++  +S +      L  +ND 
Sbjct: 119 RPGDTATRQVVLARAQDLATRFNAAAGQIDTLQAGVTADLKTTVSAVNGLTKSLAKINDQ 178

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I          +D LD+RD ++ ++S  I +ST++ ++  + V+ + G  L         
Sbjct: 179 IAAARGLGQPPNDLLDERDRIVSELSSKIQVSTVMADDGTVGVFVAGGQNLVLGATSVDM 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               +    +  +  + +DG  +     +++  G + ALL+ ++  +   +N + ++A  
Sbjct: 239 RVTTDPLDTSRSALAL-VDGDKLRMLDENSLGGGSMTALLRFQNEDLVDARNLVGQLAAG 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +  + + +  +  +     G  +                +         S
Sbjct: 298 VASAVNGQQSLGLDLNGNTGKPLFQVGAPSARSDINNSRDASGNFAATLS 347



 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/448 (9%), Positives = 98/448 (21%), Gaps = 11/448 (2%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
              M       V V   ++         +   +  +   R   +     ++   D++   
Sbjct: 210 STVMADDGTVGVFVAGGQNLVLGATSVDMRVTTDPLDTSRSALALVDGDKLRMLDENSLG 269

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                ++ L         +    +        +    Q            +         
Sbjct: 270 G--GSMTALLRFQNEDLVDARNLVGQLAAGVASAVNGQQSLGLDLNGNTGKPLFQVGAPS 327

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
             S++             +                        +  +             
Sbjct: 328 ARSDINNSRDASGNFAATLSISAPDGTVLKASDYLVRPDPATANGYVITRLSNPQETFQR 387

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK--IKALL 276
              + G    E +   ++     S     +       G+         +      + ++ 
Sbjct: 388 TADASGRFEVEGLEVTVSGTPAASDRFLLQPVARAASGMNALLQDPRQIAAASPLVSSVG 447

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                   +    +     +   +                     G             E
Sbjct: 448 SANTGTASVASLTMVRTPDMTASAAISFSTTPSGQLQYSWTVTDGGGTSTTTGPLDWNEE 507

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            I        N + LR  G         V  +A      N+             + G + 
Sbjct: 508 GIVPPEPDSINGARLRLAGVPRAGDTIAVNTIAPAYVGANNGNALALAGLRDQAIVGRSE 567

Query: 397 NVTLLEYA-------RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
           +  +             ++  +      +      S  V N    + S   GVNL EE +
Sbjct: 568 SGGVYSGGMVATDAYAAALADIAVRVQTTKAASTISTSVANQAELARSEVSGVNLDEEAA 627

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            LI+ +QSY  + K++     + +TLL+
Sbjct: 628 RLIQYQQSYQAAAKVLQVAQSVFETLLQ 655


>gi|56695115|ref|YP_165462.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3]
 gi|56676852|gb|AAV93518.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3]
          Length = 431

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/487 (9%), Positives = 126/487 (25%), Gaps = 63/487 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M++ +  N      +  + + A+I  NI N+    Y R +T              T    
Sbjct: 1   MTISSSLNAGVAALSANASRLATISDNIANSSTYGYKRVETDFHALVNASGRGKYTAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           R+  + + D+   L + S++       +    +           +         R   E 
Sbjct: 61  RTTTQRLIDQRGSLVSTSNSTDLAVRGRGMLPVMRSSQLALPQQDMLLATTGSFRTDDEG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y K+ +  +L     +    +      ++  +  ++   ++      + +   ++     
Sbjct: 121 YLKSEAGLVLMGWRANPDGSIPNLPRDTSDGLVPVQLSVNQLSGAPTTEMVLRMNLPATA 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            +A             F +       +I  +  +     +N   ++              
Sbjct: 181 TEAGSAGDTQPLSVEYFDNLGKSENVQIELVPTVPATGESNEWTMI-------------- 226

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                      +   ++   + G    +   +    G + ++              +   
Sbjct: 227 -----------LRDTASGGAVVGEYTLTFSDARTDGGTLASVTATTGGAYDATTGSVVIN 275

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   +     A +         A      D                          
Sbjct: 276 VAGGPMEINIGQLGASDGITQLSDTFAPVSITKDGT------------------------ 311

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +   +     +   + +  ++     P+  +     L+    +S  +   
Sbjct: 312 -----AVGTMSRVEVDENGFVYAFFDNGVSRRVFQIPLVDMPNPNGLVAL--DSQTYEPS 364

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S +  L          +          ++  EL+ +I+ +++Y+ S K+I   D+MLQ
Sbjct: 365 RESGTFFLWDAGDGPTGDLVSFAREESTTDVATELTAMIQTQRAYSSSAKVIQTVDEMLQ 424

Query: 474 TLLEGVK 480
                 +
Sbjct: 425 ETTNIKR 431


>gi|313497768|gb|ADR59134.1| FlgK [Pseudomonas putida BIRD-1]
          Length = 680

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 142/404 (35%), Gaps = 15/404 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ +   +  + +    +    NI NA    Y R+ T+                  T+
Sbjct: 1   MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTVQAAGPSHNIGAGFLGTGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   +S        Q      + + AD   +   +  ++    +L+
Sbjct: 61  ADVRRIYSSYLDNQLQTATSLQADSLTFQDQITSVDKLLAD--RDTGISSVLTAFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +    +    + ++  A+ +   FN  + ++ +  A  + +++     + +  + +  
Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTANIAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N  I   +AS +  +  LD R   +++++E++G++   R + +  VY   G +L     
Sbjct: 179 YNKQITAASASGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTK 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +    +            + I+    SS+  S V  G I  LL+ R  V+    N+L  
Sbjct: 238 ANTLSVEPGV--ADKSQVALRINYDSFSSDVTSVVSGGAIGGLLRYRQDVLTPSMNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+  S + +     ++    G  +   I        + ++ +         + +   
Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIAN 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            G   +  +     +   Y    +   D  + +   DP   I+ 
Sbjct: 356 SGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNADPAPVIDG 399



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 69/256 (26%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G+        +           +   N         +  +   +  G   AL+Q      
Sbjct: 425 GSITTTLTDANKLAFAGPISATSGSGNSGTGTITQPTLGESLDIYGGADTALIQQSIRDS 484

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +   D  +    G                     + +      L       +  +  
Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGTDNKLSVTVPMLDAAGDPILDGSGN 544

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            R+       GGS +    + +   A       +     +         G     +    
Sbjct: 545 PRTFAVETTIGGSPAANDSFTLSFNADGKADNRNATALLDLQTKSTVNTGSGGGTSFTSA 604

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +    + +      ++ V    SES S   GVNL +E + L+K +  Y  S++
Sbjct: 605 YASLVERVGAKANQASIDSTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664

Query: 464 LIMFTDKMLQTLLEGV 479
           +I    +   TL+  +
Sbjct: 665 IIKAAQETFSTLINAL 680


>gi|149194904|ref|ZP_01871998.1| flagellar hook-associated protein [Caminibacter mediatlanticus
           TB-2]
 gi|149135063|gb|EDM23545.1| flagellar hook-associated protein [Caminibacter mediatlanticus
           TB-2]
          Length = 717

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/423 (12%), Positives = 131/423 (30%), Gaps = 32/423 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M++ +  + A +  N       +   NI NA N +YVR   + +               V
Sbjct: 1   MAISSSLSTALSGLNAHQTAIQTTSNNISNASNPDYVRERAVFSTLPPINSIPGDIGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +              +   S  + +   ++ +          D  +      I    ++
Sbjct: 61  NISKIYRITDTFVFNQMVKTSQDLSKYSTMEKYLQQISTYF-PDVEDKGLFQDIKDFFNA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            ++ + N ++      +    +++    +  A +++ I+  A+++I+  I      + ++
Sbjct: 120 WQTLASNPNDGSAKIDLASKTQKLSDTIHLLANKIKDIQKQANEQIKTNIDEANNIIKQI 179

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNN--------DMVVYT 221
             +N  I    A+   +A++  D+RD L +++ E++G+     +           +    
Sbjct: 180 ANLNKQINSHEANNISNANELRDKRDALEKRLKELLGVKVFKNDTQSIYAQGEETIDYSK 239

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR-- 279
               TL      +            + +N I I          +    G++  LLQIR  
Sbjct: 240 DYQITLGGYNLLNNETYHELKLIDFNGNNNIAIQTEDFKLKDITKSIDGEVGGLLQIRGY 299

Query: 280 ---------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                    D  +    + L+ +A+ LI S +     +                  D   
Sbjct: 300 EFNEDTTPKDGYLGDLLSSLNALAQGLIRSTNSIYSYSAQQSVQTDSNYDVVSISPDLAN 359

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
            + +     +      + + + +    +  F  ++         IN   D  N       
Sbjct: 360 -KPLPTIEKILKHPVRDGNMILNIYDDNGNFQEDITIPIDKNKSINQIIDDINSALNGKT 418

Query: 391 VAG 393
              
Sbjct: 419 TTT 421



 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/466 (12%), Positives = 129/466 (27%), Gaps = 27/466 (5%)

Query: 26  RNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85
            NI     +++  +D   +I  E   ++  R       +              LL S  A
Sbjct: 268 NNIA-IQTEDFKLKDITKSIDGEVGGLLQIRGY-----EFNEDTTPKDGYLGDLLSSLNA 321

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG-----KTVIDNAEEVVQNFNT 140
           L + +    +   S +   S   DS         +         + ++ +          
Sbjct: 322 LAQGLIRSTNSIYSYSAQQSVQTDSNYDVVSISPDLANKPLPTIEKILKHPVRDGNMILN 381

Query: 141 SAREVQKIRADA------DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
              +    + D       +K I   I ++   L+  T     +                 
Sbjct: 382 IYDDNGNFQEDITIPIDKNKSINQIIDDINSALNGKTTTTAKLVNGQIKFVTPDGKESPN 441

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            ++    S +      +       + T++     E    D+     +   +   +  + +
Sbjct: 442 VLVKDDGSLLFSALGDIEYMPLNKINTTNLPIPLENGNFDVVVYSSDGNELARRTITVNM 501

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D      +    +           + +   I  N+ +     +   ++ K        + 
Sbjct: 502 DSKDPKYSTLEGI---------IAQINTPNIDDNKDNNSNNDVDDYYTAKLLNGQFILSP 552

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                  G+ +               +     N +  ++  +   K         G  ++
Sbjct: 553 SQTNTYIGLDNDSVNFGGAFGVNKFFDGDNAFNINLNQELANDPSKIHAYKAPNEGNNEV 612

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
            N       +   F        N T+  + R +   L     +       +Q +F  I  
Sbjct: 613 ANEMLQMQFQTISFYKNGTKIEN-TISGFYRQTTSNLANQTQNITSKKETTQTLFTSIQN 671

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y +  GVN+ EEL  L K ++ Y  + K+I   ++ML  L    +
Sbjct: 672 QYYSISGVNIDEELINLEKFQRGYQANAKVITTINQMLDALFGIKQ 717


>gi|329849966|ref|ZP_08264812.1| flagellar hook-associated protein FlgK [Asticcacaulis biprosthecum
           C19]
 gi|328841877|gb|EGF91447.1| flagellar hook-associated protein FlgK [Asticcacaulis biprosthecum
           C19]
          Length = 713

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 134/431 (31%), Gaps = 6/431 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL ++ N   +    A +Q      NI N +   Y+R+ +  T          VT    
Sbjct: 1   MSLTSIMNIGVSGLMTAQEQLRITSDNISNVNTPGYIRKVSHQTAVNIGGKGMGVTSGQV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                          +S      +        +    D    ++  +  +    ++   +
Sbjct: 61  TLAADRYLQAAQLKATSTAAAADVTYELLDQIQSQFGDITDTSNVFNQAASALSTMAEAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           ++ + +   +  + N    +   +  +  +Q IR DAD  I   + ++   L  ++ +N 
Sbjct: 121 EDPTSNASRQQTLSNLSSFLSEGSRISARIQTIRGDADARISSSVKSVNDLLKNISDLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I   T +  DA      +   +  +S+++ ++     N  + V T  G  L       +
Sbjct: 181 TISAATVAGDDATGAQTTQAKYIDDLSKLMDVNVTQNENGGVTVRTGTGMYLSGDKYATL 240

Query: 236 NFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           +++   +   T+    I + G      +    +  G+IK L++IRD+      +QL++  
Sbjct: 241 SYQPSGNVDATTSFGAIVVTGINGEKRDLADNIQSGEIKGLMEIRDTTSVAVNDQLNQYM 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                  +       +      +         +  +     +T  V      N +     
Sbjct: 301 TQFAEQLNAAHNQGTSVPAPATMAGKTLSLTQEEAVTGFTGQTNLVTLDASGNITHRMLV 360

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +  +  +    +G     N   D          V   N  +TL     N    +   
Sbjct: 361 DFSAGTWSLDNGATSGTFTPGNFASDLTTAFDGAATVGFANGRMTLSASGTNGNTGIAVV 420

Query: 415 RSDSHDLHMKS 425
              +      +
Sbjct: 421 DPAASATVTPA 431



 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/390 (13%), Positives = 102/390 (26%), Gaps = 16/390 (4%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                   +     +     L  +S        G T          +  T+A +      
Sbjct: 339 FTGQTNLVTLDASGNITHRMLVDFSAGTWSLDNGATSGTFTPGNFASDLTTAFDGAATVG 398

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            A+  + L  S          V   A    T +      F     +     SE       
Sbjct: 399 FANGRMTLSASGTNGNTGIAVVDPAASATVTPAGKQGQGFSHYFGLNDVVTSEKPTNYRT 458

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
              +     + S   T     P   +   +       +S    ++G+  +++        
Sbjct: 459 GLTSTSDSGFASGTVTFQLKSPNGASLASVAFTPTAGQSMADMVNGLNNTTSGMGRYGTF 518

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            +    Q+         N L                   ++ +  G   + G        
Sbjct: 519 SLDGNGQLSFKGFGNPSNSLSIK---------------SDTTSRLGTGASFGEFFGVGGT 563

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              +S  + +     ++P  +                ++G         D  +K   F  
Sbjct: 564 PATVSSGLAIRNAIYNDPKQMAMAKVNLNATGGLGALVSGDGSNGLDMSDIGSKTTTFAK 623

Query: 391 VA-GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    TL  Y  +  G +    +++      ++ +        S   GVNL EEL 
Sbjct: 624 TGLNSGGASTLERYGSDLAGQIGNLAANAKSHKESNEALLAEAQSRRSAYEGVNLDEELV 683

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            L   +Q Y+ + +LI     M  TLLE V
Sbjct: 684 NLTVYQQGYSAAGRLIQAAKDMYDTLLEMV 713


>gi|315127347|ref|YP_004069350.1| flagellar hook-associated [Pseudoalteromonas sp. SM9913]
 gi|315015861|gb|ADT69199.1| flagellar hook-associated [Pseudoalteromonas sp. SM9913]
          Length = 668

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 149/437 (34%), Gaps = 7/437 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MS   + N A +     S+   +  +NI N + + YVR  T  T      V         
Sbjct: 1   MS-FNLLNIANSGIRANSELLQTTSKNIANVNTEGYVRERTEFTTMIDNQVGRGQTYRLL 59

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                K L+  +S         S  +  + + ++   +NS +  I+ + ++++      S
Sbjct: 60  NEFAQKQLNRDTSNKSFFDQFVSEASRVDQIFSE--KSNSLSTSINSMFNNVQEALNQPS 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK- 178
             +    V+ +A+ ++   +  A  V + +A  ++++E+        +  ++ +N  I  
Sbjct: 118 STVARSLVMSDAQNLIDQMDRLAGIVSEQKAVVNEQLEIFSEEANTLIESISSLNQEIAG 177

Query: 179 -FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              T ++ DA    ++RD  ++ +S++I I T+   N +  V+   G  +         F
Sbjct: 178 VHGTKNEADASSAYNERDKAIRDLSKLIDIETLDGPNGEKQVFMGTGEAVVMQNGSFNLF 237

Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                     +   + ++G   V         KGKI  LL  RD ++   QNQ+ +M   
Sbjct: 238 SISGDPDANFKELRLDVNGGQAVPLEIDPTKLKGKIGGLLAFRDDILVPAQNQIGQMGIA 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L  SF++++ +  ++    G  I D                           S L     
Sbjct: 298 LADSFNQQNRLGMDANGELGGDIFDIPTVSAFVYQANTGTANMSATVEAGKGSELPASDF 357

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           V        +      D       S +   I       +  +T  E     +       +
Sbjct: 358 VITYTGNPNEVSIQPIDNKGEPLGSASLAVIPPSGIIDSAAITSGESFGLELNVTGAGNA 417

Query: 417 DSHDLHMKSQVVFNHIS 433
                   +     +IS
Sbjct: 418 GDQFQIKLNSGAAGNIS 434



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/373 (10%), Positives = 91/373 (24%), Gaps = 14/373 (3%)

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            D+      ++ +       +  A     N + +    +     A   +     N     
Sbjct: 310 MDANGELGGDIFDIPTVSAFVYQANTGTANMSATVEAGKGSELPASDFVITYTGNPNEVS 369

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +            +        +     +    S  + ++     N            L
Sbjct: 370 IQPIDNKGEPLGSASLAVIPPSGIIDSAAITSGESFGLELNVTGAGNAGDQFQIK----L 425

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +I+        +   S     DG+  +     +             +  + +  
Sbjct: 426 NSGAAGNISLTTGRGEDIALASPIRTADGLDNTGTGTISPGDVSDVTTGSFTNP-LGLAN 484

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             ++ +       +   D     +  V         +        G    I   P     
Sbjct: 485 GPINIVKTANANEYQLTDGNGTTTFTVIPPANNILAQAGPPYDGYGFDFNIEGVPATGDT 544

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +   + G           +       +    +S          A  + + TL +     
Sbjct: 545 FNLEFNEG---------GFDDNRNGQKLADLQNSDLVRQNVVASASADNHKTLNQAYAGL 595

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    S +         +       Y +  GVNL EE + L++ +QSY  S +++  
Sbjct: 596 VTDVGVVTSQAKTNGAAFDALAQQSEAWYESLSGVNLDEEAANLLRFQQSYAASAQVLSA 655

Query: 468 TDKMLQTLLEGVK 480
              +  TLL   +
Sbjct: 656 ARSIFDTLLSAAR 668


>gi|254475161|ref|ZP_05088547.1| flagellar hook protein FlgE [Ruegeria sp. R11]
 gi|214029404|gb|EEB70239.1| flagellar hook protein FlgE [Ruegeria sp. R11]
          Length = 441

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/489 (10%), Positives = 144/489 (29%), Gaps = 64/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M++ +  N   +     + + ASI  NI N+    Y R  T         S    +    
Sbjct: 8   MTISSSLNAGVSGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMGSSGGTYSAGGV 67

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPTHYISKLRDSL 111
           R+ N  + D+   L + ++A       +    +  M   +   +N        +  R + 
Sbjct: 68  RTTNVRLIDERGPLVSTNNATDLAVRGRGMLPVTSMTEVEVGASNPQMMLTTTASFRTNA 127

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +      S  +L      +   +      ++  ++ +R + +K      + +   ++   
Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIPPYARDTSDGLEPVRFNVNKLSGEPTTEMSLGVNLPA 187

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              ++    T+       + +       +I  +  +     +N   ++ T   T      
Sbjct: 188 TATESGAAGTSENLSIEYYDNLGKSESLQIEFVPTVPATGESNEWTMIITDTATGATPIG 247

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
              + F+  ++ T     N + +     + +  +      +       +  +    N L 
Sbjct: 248 EYTLTFD--DNRTSGGALNAVTLGSAGGAYDPATGSIIVNVAGGPMEINIGMIGDDNGLT 305

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           +++     +   KD                                              
Sbjct: 306 QLSDTFAPASISKD---------------------------------------------- 319

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 +    +    +     +  +Y    ++     P+  +     ++   R    ++
Sbjct: 320 -----GAPVGNFTGVEIDEAGFVRANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQ--TYM 372

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + S S+ L    +     I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 373 PSSESGSYFLWNAGEGPTGDILGYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEM 432

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 433 LQETTNIKR 441


>gi|15639714|ref|NP_219164.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025952|ref|YP_001933724.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum
           SS14]
 gi|6015169|sp|O07884|FLGE_TREPA RecName: Full=Flagellar hook protein flgE
 gi|2196893|gb|AAB61251.1| FlgE [Treponema pallidum]
 gi|3323028|gb|AAC65692.1| flagellar hook protein (flgE) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018527|gb|ACD71145.1| flagellar hook protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060091|gb|ADD72826.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 463

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/491 (7%), Positives = 111/491 (22%), Gaps = 41/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56
           ++       +   N   +   I  N+ N +   + R                 R      
Sbjct: 1   MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSAAARPNEEVG 60

Query: 57  -------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   +          
Sbjct: 61  GVNPKEVGLGVLIASIDTVHTQGALQTTGINTDVSIQGSGFFVLKSGEKTFFTRAGAFGV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  N +  +  +  +   +   +    S+ + Q +     ++I+ + ++   +   
Sbjct: 121 DNAGTLVNPANGMRVQGWMAQ-DVAGERLINSSAQTQDLVIPIGQKIDAQQTSTVHYACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L      +              ++ DV     +    +       + + +  S       
Sbjct: 180 LDKRLPELA----------ADANEADVRKSTWTTDFQVYDSFGQQHTLQINFSRVPGTNN 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +  +        +       DG   +                   +   P  Q  
Sbjct: 230 QWQATVAVDPGTEVDTQTRVGVGTSDGAANTFIVNFDNFGHLASVTDTAGNVTGPTGQVL 289

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+                + +             +         I        Q+    +
Sbjct: 290 LE---------------ASYDVVGANPDDAGQVTRHAFTLNLGEIGTARNTITQFAERST 334

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +   Y +  +++     +AG      L +   N   
Sbjct: 335 TKAYRQDGYAMGYLENFKIDQSGVITGVYSNGVSQDIGQLALAGFANQGGLEKAGEN--T 392

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ N S   ++     +    +         V+L ++ + +I  ++ +    K I  +D
Sbjct: 393 YVQSNNSGIANISTSGVMGKGKLIAGTLEMSNVDLTDQFTDMIITQKGFQAGAKTIQTSD 452

Query: 470 KMLQTLLEGVK 480
            ML T+L   +
Sbjct: 453 TMLDTVLSLKR 463


>gi|253688966|ref|YP_003018156.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755544|gb|ACT13620.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 568

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 144/409 (35%), Gaps = 14/409 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +    A    +++  NI N     Y R++ +   +             V V
Sbjct: 1   MSNLINTAMSGLKGAQVALSTVSNNISNQAVTGYSRQNAILEQATSSSTSAGYIGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +        L A  +      +   +E + ++ +       S +  I     +L+
Sbjct: 61  VSINRQYNEFITNQLRAAQTTSS--SVTAYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N  +    +TV+  AE +V  F  + + ++ + +  + +I+  +  +  +  ++  
Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSTVGQVNTYTEQIAS 178

Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I       S    +D LDQRD+L+ ++++++G+   V++     V   +GT L + 
Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDLLVDQLNKLVGVDVTVQDGIVYNVALKNGTNLVQA 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +         V S   S +  G +  LL  R   +   +NQL
Sbjct: 239 GTSNQLVAIGSSGDPTRLTVGYRDQTNDVVSLNESTLTGGSLGGLLSFRTETLDEARNQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     + + V G       K +     +     +       S    
Sbjct: 299 GQLALAFADAFNAQHQQGYDRDGVKGGDFFSFGKAVVLNDSKNAGNAVLTPSYTNSKDVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
             +         W V  L+           +           GI   +T
Sbjct: 359 ATNYSIKYDGTNWQVTRLSDNSKFTAAVTTAGTPPESSLNFDGIKMTIT 407



 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/425 (10%), Positives = 113/425 (26%), Gaps = 13/425 (3%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114
            +  +  +  + +    +       +    +       +    P   + +    ++    
Sbjct: 152 RDMDSGLNTQIQSTVGQVNTYTEQIASLNNEITKLMGANSGTMPNDLLDQRDLLVDQLNK 211

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
              +   +    V + A +   N   +    Q +   +  +        R   +++  +N
Sbjct: 212 LVGVDVTVQDGIVYNVALKNGTNLVQAGTSNQLVAIGSSGDPTRLTVGYRDQTNDVVSLN 271

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           ++     +         +  D    ++ ++        N      Y  DG    +     
Sbjct: 272 ESTLTGGSLGGLLSFRTETLDEARNQLGQLALAFADAFNAQHQQGYDRDGVKGGDFFSFG 331

Query: 235 INFEKMNSYTVTSE-SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 +S    +    P + +   V +   S    G    + ++ D+            
Sbjct: 332 KAVVLNDSKNAGNAVLTPSYTNSKDVQATNYSIKYDGTNWQVTRLSDNSKFTAAVTTAGT 391

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 +F         +      F+   + D+   +       I    +  +    L D
Sbjct: 392 PPESSLNFDGIKMTITGTPTTNDTFLLKPVNDVIIDMS----VAISDPSKIAAASVKLDD 447

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G+       N        +       +     I      +    ++       +G +  
Sbjct: 448 AGNPVVDGSGNPVFGGVSDNTNAKALLALQNEKI------VGGKASISGAYAGLVGEIGN 501

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S     +   Q V   ++    +  GVNL EE   L++ +Q Y  + ++I     +  
Sbjct: 502 QTSTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRYQQYYMANAQVIKTAQSIFD 561

Query: 474 TLLEG 478
            LL  
Sbjct: 562 ALLAA 566


>gi|78485806|ref|YP_391731.1| hypothetical protein Tcr_1465 [Thiomicrospira crunogena XCL-2]
 gi|78364092|gb|ABB42057.1| Flagellar hook-associated protein FlgK [Thiomicrospira crunogena
           XCL-2]
          Length = 630

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/464 (11%), Positives = 135/464 (29%), Gaps = 26/464 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N      N   +       N+ N   + Y R+    T S               V
Sbjct: 1   MADMLNIGTAATNTFRRAIEVTSHNVANVGTEGYSRQRADITSSSASNAGYGFLGAGSRV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +      +     L    S   +     S     E + A    +     ++  L DS +
Sbjct: 61  SSIDRVYADYIQTQLVDAYSLKSRYDEQLSLSKQVEGIVA--SNDKGVQTFMQSLFDSFQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S N +       V+  A+ +       +  +   +   + +I+     + + L+ +  
Sbjct: 119 DLSNNPTSSTSRDQVVSQAKNMETMLLNMSTVLGDTQEQVNGQIKNMTDEINKNLTTIQA 178

Query: 173 VNDAIKFK-TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N+ +    +      +D LDQR+  ++++ + + I T  + +  + ++T +G     + 
Sbjct: 179 INNQVANSISNGGQPPNDLLDQREQAIKELGQYMDIKTFRQEDGRIDIHTGNGRYPLISD 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                 +   +         +++            +  G++  +L  R++++    N+L 
Sbjct: 239 NTITKLDADLTDYKNENRVEVYMQLGGQKVQVSDNIKGGQLGGVLDFRNNMLDRSMNELG 298

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADG--------IKDLDNKLCQGISETICVNPQ 343
                L+ S + +     +    PG               K+   +    I  +      
Sbjct: 299 LALNGLVASTNWQHYQGYDQNGNPGQDFFKPLSTNAIQSAKNTGPEDGTNIQVSFNPVYD 358

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             +           +     +      Y D  N+   + +    F+P        T    
Sbjct: 359 PSAPVQGTNPPYDPAAVPPADNAQPPTYGDKQNYLNQAMSAIGEFEPREYKLQFSTASNG 418

Query: 404 A---RNSIGWLEKNRSDSHDLHM--KSQVVFNHISESYSNTVGV 442
                N  G    + + +  L         F  +     +   V
Sbjct: 419 FEIKDNKTGDPILDAAGNPVLITLGAPDNGFEDVEGLRFDVTNV 462



 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 100/368 (27%), Gaps = 7/368 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S N+    LG  +      + ++ N     +  + A  + +             +   
Sbjct: 269 QVSDNIKGGQLGGVLDFRNNMLDRSMNELGLALNGLVASTNWQHYQGYDQNGNPGQDFFK 328

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                  ++A      D  + +            +       +   V  +D         
Sbjct: 329 PLSTNAIQSAKNTGPEDGTNIQVSFNPVYDPSAPVQGTNPPYDPAAVPPADNAQPPTYGD 388

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           +     +  S     E     +     S+       K     L    + V+       + 
Sbjct: 389 KQNYLNQAMSAIGEFEPREYKLQFSTASNGFEIKDNKTGDPILDAAGNPVLITLGAPDNG 448

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
              V    F   +  A  ++    +         D        E I    Q   +     
Sbjct: 449 FEDVEGLRFDVTNVAAAPADGDTFVVKPHQAMLEDFATTISSGEQIAARGQSPVDT---- 504

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
               V+          +   ++      S     +    A  N + TLL         + 
Sbjct: 505 ---GVAGLADEAPSPASVGDNVNIANMASLQSKKVLYSDATGNASETLLGGFSKMATNVG 561

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +       + VF+ I+    +  GVNL EE + L++ +Q+Y  S ++I  +  + 
Sbjct: 562 MYVHGTEIQLTSQENVFDQINARRESYSGVNLDEEAANLLRFQQAYQASAQIIQTSQSLF 621

Query: 473 QTLLEGVK 480
           Q+LL  V+
Sbjct: 622 QSLLGAVR 629


>gi|292487945|ref|YP_003530820.1| flagellar hook-filament junction protein 1 [Erwinia amylovora
           CFBP1430]
 gi|292899164|ref|YP_003538533.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946]
 gi|291199012|emb|CBJ46123.1| flagellar hook-associated protein 1 [Erwinia amylovora ATCC 49946]
 gi|291553367|emb|CBA20412.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora
           CFBP1430]
 gi|312172066|emb|CBX80323.1| Flagellar hook-filament junction protein 1 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 551

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/553 (14%), Positives = 173/553 (31%), Gaps = 79/553 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  + +S    +   NI N     Y R+ T+   S               V
Sbjct: 1   MSNLINTAMSGLSASSAALNTTSNNITNYAVTGYSRQTTVLNQSASTLSGGNYYGNGAAV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +   E     +K L A S+            +  + M       N+ +  I     SL+
Sbjct: 61  SSVYREYDQFINKQLLAASTQSSALSTQAGQMSNIDDMM--SGTTNNLSTNIQDFFKSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S+    + V+  AE +V  F  S   +  + +  +  I+  +  +  +  ++  
Sbjct: 119 TLASNASDSSSRQAVLGKAEGLVNQFKVSDTYLANLDSGLNTSIKSTVGQVNNYAEQIAN 178

Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N  I       +  + ++ LD+RD+L+ ++++++G++   ++     +   +G +L + 
Sbjct: 179 INQQIAKLKGAGAGSEPNNLLDKRDLLVSELNKLVGVNVSQQDGGSYSISIGNGISLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
              +      +S      +   +       +    S    G +  LL  R+  +   +NQ
Sbjct: 239 DRFEQLAAVPSSADPARTTIASVDSVTGAKTEIAESQFTSGSLGGLLAFRND-LDGVRNQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC------------------ 331
           + ++A  L  +F+ +     +SE   G                                 
Sbjct: 298 IGQLALALGSNFNTQHQAGVDSEGDKGEAFFKLGSPSATSNSLNKGNASLSVAYDASKTG 357

Query: 332 --------QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                     +        +   N        S      ++   +           DS+ 
Sbjct: 358 DVKASNYKMTLENGSWNLVRLADNSKVTDVDTSTDGTLKFDGLTVTVGATGTAQNNDSYI 417

Query: 384 KNFIFDPVAGINTNVT-----------------------LLEYARNSIGWLEKNRSDSHD 420
              +   ++G++ N+T                       L    ++ I            
Sbjct: 418 IKPVSSVISGMSVNITDAAKLAASSPTGGESNNENVKSLLGLQTQDLINGKSTLTQAYAS 477

Query: 421 LHMKSQVVFNHISESYSNTVGV--------------NLQEELSFLIKVEQSYNISNKLIM 466
           L        + +  S +    V              NL EE S L + +Q Y  + +++ 
Sbjct: 478 LVADVGNKTSSLEASNTTQSAVVKQLTSQQQSVSGVNLDEEYSNLARYQQYYMANAQVLQ 537

Query: 467 FTDKMLQTLLEGV 479
               + Q+LL  V
Sbjct: 538 TASTLFQSLLTAV 550


>gi|13472592|ref|NP_104159.1| flagellar hook protein FlgE [Mesorhizobium loti MAFF303099]
 gi|14023338|dbj|BAB49945.1| flagellar hook protein; FlgE [Mesorhizobium loti MAFF303099]
          Length = 418

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/481 (8%), Positives = 108/481 (22%), Gaps = 64/481 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + ++   NI N+D   Y R     +      T     S   
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    +     +       +      D                 +    N +
Sbjct: 61  TTTIRQAVSDPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPFLTRAGAFVPDAQGRLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L      N                                    ++    +   +  
Sbjct: 121 GFQLMAYSYANG------------------------------TPAATVNGFEGLQPVVIS 150

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                            L    + +   +    N +     +      ++ +      + 
Sbjct: 151 DQGLTATPSTLGTYSGNLPAGATPVAAANLPGANASTAQYTSKSSMVAYDNLGNKKLLDV 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T T        D    +         G +       D+           ++  +  
Sbjct: 211 YFTNTGTGTWQVAVFDQSKATPGTSFPYTGGALGTANLTFDTTTGKLTGAPTSVSFTV-- 268

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                             ++  +    Q  +  +      + + 
Sbjct: 269 -----------------------------PGGASLNLDLSKLTQLGTGFTVSDAQVNGNA 299

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +   ++    +   Y D   K     P+A + +   L     N         S + 
Sbjct: 300 PSTIDKVQISKDGTIYAQYKDGSTKPLYKIPLADVQSPDQLKALPGNVYAQ--GTDSGAI 357

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +   ++     I         V++ EEL+ +I  ++SY  ++K+      ++  L+   
Sbjct: 358 RVGFANEGKAGSIISGALENSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMDVLVNLK 417

Query: 480 K 480
           +
Sbjct: 418 R 418


>gi|2689167|emb|CAA06002.1| hook associated flagellar protein 1 [Borrelia burgdorferi]
          Length = 253

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 87/250 (34%), Gaps = 18/250 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-----------------TT 44
           S  +     +           ++  N+ NA    Y R+                      
Sbjct: 3   STFSGIEIGKRSLFAHKDAMNTVGHNLSNATKPGYSRQRVTMKTEIPLYAPQLNRAKKQG 62

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
              + + V +       + +  +   S  +G       F ++ E +  ++  + S    +
Sbjct: 63  QLGQGIVVQSIDRVKDELLNTRIIEESHRLGYWTSQDKFISILEDVY-NEPEDQSIRKRL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +S    +         K +++  +   +        +++I   A+ EI++      
Sbjct: 122 NDFWESWHDLANQPQGLAERKIILERGKSFCEGIRNRFHSLERIYIMANDEIKITTDEAN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            ++  +  +N  I    A K + +D +D RD++++K+  II +S   + + +  +  ++G
Sbjct: 182 NYIRNIANLNKQISKSQAMKDNPNDLMDARDLMVEKLGNIISVSIENKQDPNEFLIHAEG 241

Query: 225 TTLFETVPRD 234
             L +    +
Sbjct: 242 RHLVQGSIAN 251


>gi|269968150|ref|ZP_06182183.1| putative flagellar hook-associated protein 1 [Vibrio alginolyticus
           40B]
 gi|269827218|gb|EEZ81519.1| putative flagellar hook-associated protein 1 [Vibrio alginolyticus
           40B]
          Length = 378

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/405 (13%), Positives = 127/405 (31%), Gaps = 29/405 (7%)

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                   S  +  E          S +  +  L  +L   +         + +I+ +E 
Sbjct: 2   AAYASGYTSNMSQLENTLG--ADGFSISAGLDSLNAALNDATVKPESIPYRQQIINESEA 59

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
           + + FNT    +     D   +    +++    +  +  VN  +     +  +    +D+
Sbjct: 60  LARRFNTLTESLYNQHKDMSDQRNAALNHANSLMENIAKVNKQLVEMQGTGGNPSQLMDE 119

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           RD L+ ++S+ I I T  +++  + V  + G  L             +          + 
Sbjct: 120 RDRLIGELSQTIEIKTTQQHDGSVQVTLTSGQPLVMGTDHGKLEAIPDPSDPYLADLHVT 179

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                 +         GK+ A+   +  V+   Q  L++MA+ L   ++       +   
Sbjct: 180 FSNQSFAIGDS---LGGKLGAINDYQTEVLKPNQLALNDMAKALADEYNAVLATGKDLNG 236

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
            PG  +                               L        +  ++     G  D
Sbjct: 237 NPGKPLFSYDPANPAAS--------------------LDITKLTPDELAFSSDGTPGNAD 276

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
            +    +  NK            +V+L +   + +G        ++  +     +     
Sbjct: 277 ALQSLIELSNKPVAVSG----YGSVSLNDAFSSMVGQTAIKARQANADYQAKLAMNKQAH 332

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +  N   VN  EE + L+    ++N + K+I   +++L ++L+ 
Sbjct: 333 AARDNVSSVNSDEEAANLMMFANAHNANMKVISTANQLLDSILQL 377


>gi|271500072|ref|YP_003333097.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech586]
 gi|270343627|gb|ACZ76392.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech586]
          Length = 638

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 155/417 (37%), Gaps = 15/417 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N   +  + A    +++  NI N     Y R++ +   +             VTV
Sbjct: 1   MSNLINTGMSGLSAAQAALSTVSNNISNQAVAGYSRQNALLAQNNGTTTSAGYIGNGVTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +  +   K L A  +            +  + + +    +   +  I     +L+
Sbjct: 61  VSINRDYNDFIAKQLRAAQATSSATTSYYDQISKIDNLLSSSSSSL--STSIQDFFKNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S+  + +TV+  A  +V  F  + + ++ + ++ + E+ + ++ +  +  ++  
Sbjct: 119 NLTSNSSDSSVRQTVLGKANALVNQFKITDQYLRDMDSNINGELSVTVTQINTYAQQIAD 178

Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I       +    +D LDQRD L+  +++++G+   V++ N   V   +G TL + 
Sbjct: 179 INDQIVRLKGANNGAAPNDLLDQRDSLVDSLNKLVGVDVAVQDGNMYNVSLKNGLTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +         VS  + S +  G +  LL  R S +   +NQL
Sbjct: 239 KSFNTLVATTSSTDPTRTTIAYNDAIAGVSEVKESTITGGSLGGLLNFRTSTLDSARNQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +MA     +F+++     +  N  G         +  K  +       ++  Y S+   
Sbjct: 299 GQMALAFSDAFNQQHKAGFDLNNAQGGDFFGVGSSVTLKSAKNT-SAAELSSSYLSDTYS 357

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           ++  G+       +    +          D F  +      +G   +  +     + 
Sbjct: 358 MQYNGTSWSVTRSDGTTASSTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGQSSI 414



 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 95/361 (26%), Gaps = 13/361 (3%)

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
              +    N     +   R    +          +       +N+A          +   
Sbjct: 277 GGSLGGLLNFRTSTLDSARNQLGQMALAFSDAFNQQHKAGFDLNNAQGGDFFGVGSSVTL 336

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
              ++    ++S      T     N      +       +     +    + +T+    +
Sbjct: 337 KSAKNTSAAELSSSYLSDTYSMQYNGTSWSVTRSDGTTASSTLSGSALTFDGFTIDISGS 396

Query: 251 PIFIDG-----VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               D          S+     P     A L   D+      +   +       ++S   
Sbjct: 397 AASGDTFSFKVSPGQSSISQTAPAAASAASLTRNDNNYIKASDYTVKFVGPAANNWSITR 456

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G   +    + A       + +  G+   I   P  +   +       V    +   
Sbjct: 457 LSDGADLSSSATYAAASGSTPASLIFDGMKLDITGTPAAKDVFTVKGVRDVVVGMSVVIS 516

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGIN--------TNVTLLEYARNSIGWLEKNRSD 417
            +        +        +   +  A +N           ++ +   + +G +    S 
Sbjct: 517 DSSKIAAAGSSLTSTGGGVSDNTNAKALLNLQTVKVVEGKSSISQAYASLVGDIGNKTST 576

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       + V + ++    +  GVNL EE   L++ +Q Y  + K+I     +  +LL 
Sbjct: 577 AKVTDTSQKNVVSQLTTEQQSVSGVNLDEEYGDLVRFQQYYMANAKVIQTASTIFDSLLA 636

Query: 478 G 478
            
Sbjct: 637 I 637


>gi|218249383|ref|YP_002374806.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7]
 gi|218164571|gb|ACK74632.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7]
          Length = 442

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 114/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +                        D E E  I+        
Sbjct: 121 DSDRHLVNPANGMRIQGWMAR----------------------DLEGEKVINTASDIEDL 158

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  + D    K+         LD+R  L+Q+ +    I+      N  +  +     + E
Sbjct: 159 IIPIGDKEGAKSTKNVTFACNLDKRLPLIQEGANPADIARGTWVVNKSLYDSFGNVGVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|295690745|ref|YP_003594438.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC
           21756]
 gi|295432648|gb|ADG11820.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC
           21756]
          Length = 703

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 119/377 (31%), Gaps = 9/377 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL ++ + A +    A         NI N +   YVR+    +          V++   
Sbjct: 1   MSLNSIMSTATSGMTAAQTGLRVTSDNIANVNTNGYVRKTISQSNMLSNGMGIGVSIDAI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +              +S   +  ++       + +  D   + S    +  +  +  +  
Sbjct: 61  KRATDRFLTTASLNAASDSSRATVIAQSLNNVQQLFGDPTGSTSFFTRLDDVFTAFSAAQ 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +L    +   ++ +   +     + K+  D D  I  ++  +   LS++  +N 
Sbjct: 121 DDPSSALLRTQALTRVDQFLSESSRITSSISKLGKDVDTRISGDVDRVNDLLSQIDALNT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  DA    + +  L+ ++S+++ +    R    +VV +++G  L       +
Sbjct: 181 DITRAKVAGTDATGAENVQSGLVDELSKLMNVQVTPRTMGGVVVRSTEGLPLAGDGAAKV 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++   + T            V    N       G+I+ L+++R++ +    +QL E   
Sbjct: 241 TYQTSPTATGYLTVQLANGSPVPTPLNV----SSGEIRGLMEVRNNELVNMSDQLGEFTS 296

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +     A        L   D   D    L     +T               D  
Sbjct: 297 RAAEEINRAANGASAVPAPSTLSGRDTGLDDQAALTGFTGKTTIALTDSSGVIQRRIDID 356

Query: 356 SVSKKFLWNVKNLAGYP 372
             +     N      + 
Sbjct: 357 FDAGTMSINGAAGPAFT 373



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/441 (12%), Positives = 115/441 (26%), Gaps = 7/441 (1%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           +P NV+    R   +   +++++                      ++     ++ +   +
Sbjct: 264 TPLNVSSGEIRGLMEVRNNELVNMSDQLGEFTSRAAEEINRAANGASAVPAPSTLSGRDT 323

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
            L D            I         +  +     +        A         ++ L  
Sbjct: 324 GLDDQAALTGFTGKTTIALTDSSGVIQRRIDIDFDAGTMSINGAAGPAFTPANFMTQLNT 383

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            +  +          T +           D          G S     N+ +        
Sbjct: 384 AMGGMGGAGFTGGALTLTGSGGLGVAVADDATTPSNKAGKGFSHYFGLNDIVRTNGYSPY 443

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
               T      F         ++     I  V+V +  G  +    + AL      V   
Sbjct: 444 ETGLTATDAHGFTSGTMTIRLTDVEGGRIRDVIVDAPVGGTMQDL-LDALNSRASGVGLY 502

Query: 286 FQNQLDE----MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            Q  L+            +      +   +E   G      +  +         E   VN
Sbjct: 503 GQFSLNTKGQMTFASNTTTPVTMSVVGDTTERGVGGPSVSQLFGVGPAERSTRGEKFFVN 562

Query: 342 PQYRSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INTNVT 399
                NP+ L      +++          G          S +    F          ++
Sbjct: 563 TAMDQNPTLLPFAQLDLTQAVGGLAALAIGDGRGALALAKSGDTVTSFSAAGDASPATMS 622

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           +  YA +  G + +  + +      ++ V   +     +  GVNL EEL  L   +Q++N
Sbjct: 623 VSRYAADFSGSIARKANTAESRKDSAEAVSAEVDSQRQSEEGVNLDEELINLTTYQQAFN 682

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            S +LI     M   L + V+
Sbjct: 683 ASARLIQAAKDMYDVLTDLVR 703


>gi|37679153|ref|NP_933762.1| flagellar hook-associated protein FlgK [Vibrio vulnificus YJ016]
 gi|320157103|ref|YP_004189482.1| flagellar hook-associated protein FlgK [Vibrio vulnificus MO6-24/O]
 gi|37197895|dbj|BAC93733.1| flagellar hook-associated protein FlgK [Vibrio vulnificus YJ016]
 gi|319932415|gb|ADV87279.1| flagellar hook-associated protein FlgK [Vibrio vulnificus MO6-24/O]
          Length = 638

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/448 (12%), Positives = 144/448 (32%), Gaps = 18/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQATNDPRQFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++    +  +++   +   M +           +++  D+L++
Sbjct: 63  NVRRSWDQFAVNELNLSTTNFANKGDVEANLEMLSSMLSSVASKK-IPENLNEWFDALKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K +++ A  + +  N     +++     +K++++ I  + +   E+  +
Sbjct: 122 LADSPNDIGARKVLLEKARIISETVNGFHETIRQQYDVTNKKLDMGIERINQIAVEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L++++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVKELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +      +G  +     S    GK+ A+L +RD  +P   ++L  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAIYEGKSLKP-IKSVGLDGKLGAMLDMRDKQIPYVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       ++      +     G  I   +        + ++       +     + L 
Sbjct: 297 MAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDS-QAEVAVFINDLA 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++  N             S +       + G+   V     A   I    
Sbjct: 356 SLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRNEPKAGEKILLRP 415

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
              S +      +           ++T 
Sbjct: 416 TRNSAAQMQVATNDASMIAAQSYEASTS 443



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 50/153 (32%)

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                      ++ +   + S          ++     N K  A          +     
Sbjct: 485 SPEPYPPKGPVSVTLPSSHPSYKEGKETVFELTAGAWANDKFTANLVPSEGDNGNLRKMQ 544

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            I           T+++   N    +    S +  L   +Q       E  ++  GVNL 
Sbjct: 545 QIQLDKKMDGNQSTIIDVYHNLNTNVGLRNSTATRLANIAQHENEAAQERIASISGVNLD 604

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EE + +++ +Q+Y  S++++   +    T+L+ 
Sbjct: 605 EEAANMMRFQQAYMASSRIMQAANDTFNTILQL 637


>gi|209963559|ref|YP_002296474.1| flagellar hook protein FlgE [Rhodospirillum centenum SW]
 gi|209957025|gb|ACI97661.1| flagellar hook protein FlgE [Rhodospirillum centenum SW]
          Length = 434

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/491 (10%), Positives = 126/491 (25%), Gaps = 68/491 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54
           MS+ +      +     S +FA+I  NI N+    Y R     +       SP + +   
Sbjct: 1   MSIYSAMYSGVSGLAAQSAKFAAISDNISNSSTVGYKRSGVQFSTLVTSASSPGSYSAGG 60

Query: 55  QRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSL 111
            ++    +     ++ A +SA       + F  +    +A +    S         R   
Sbjct: 61  VQADLHTEVSRGGIVQATNSATDMAISGRGFFVVSNRSAAVNGEAPSYMLTRSGAFRVDE 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEIELEISNLRRFLSE 169
                N +   L    +    +VV    +  S   ++ +   +   +    + +    + 
Sbjct: 121 NGNLHNTAGYFLQGWKLGPDGKVVGGEPSRTSFTGLETVNLSSITGLAKATTQIDFAANL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                               +          +                           +
Sbjct: 181 PASQTGKTPPAQPFSTSVDYYTPLGGTGRLTL-----------------------EWAPQ 217

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +   + N    +  T    +N +F      S   GS     ++ A   +           
Sbjct: 218 SAANEWNLTIYDGTTSLGTANIVFNGNTATSGPPGSLNTMSEVGASPTLDVDAATGSIKL 277

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                 +++                                            Q+  +  
Sbjct: 278 DVNGQPIVVNLGRPNQTGGL--------------------------------TQWGDDYV 305

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
             +     +         +     +   Y +   +     PVA +     L     +   
Sbjct: 306 PTKINKDGASYAPLERVEIGDDGVMTAIYKNGLRQAVYQIPVADVTNPDGLRRM--DGNA 363

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +     S  + L          +  +      V++ EEL+ +I+ +++Y+ + K+I   D
Sbjct: 364 FQVSRESGDYYLWDAGSGKAGAVDGAALEASNVDIAEELTSIIETQRAYSSNAKIIQTAD 423

Query: 470 KMLQTLLEGVK 480
           +ML  +   ++
Sbjct: 424 EMLDEVSRLMR 434


>gi|158320521|ref|YP_001513028.1| hypothetical protein Clos_1488 [Alkaliphilus oremlandii OhILAs]
 gi|158140720|gb|ABW19032.1| protein of unknown function DUF1078 domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 448

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/478 (6%), Positives = 108/478 (22%), Gaps = 30/478 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N +   +                   R+     
Sbjct: 1   MMRSMYSAVSSLKAHQLKMDVIGNNIANVNTVGFKGTRVTFQEVFSQTLRGAGRA----- 55

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +      +   Q  L  +  ++    +     +      +    +     S       
Sbjct: 56  --QEGGRGGTNPQQVGLGINVNSMDTFHTRGSVESTGYNTDLMINGEGFFVVSDTQGGLQ 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
              T              +      +   A ++ + ++    +           ++    
Sbjct: 114 KSYTRAGAFGLDANGNLITPDGYYVLGYTAVRDADGQVQKNEKGQPIFEENLTGLRISRD 173

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +     +    +            +L       + F++ + 
Sbjct: 174 ETAPPAATTKATFTGNIDSNLSADSTGTAGDGGIHETVMKVHDSLGNAHTVKVQFQRTDQ 233

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T  +  + I                      ++ +  +                +  
Sbjct: 234 GNDTKRTFAVTI---------------------TELDNVKLGAPIPLEPATPLTFDSAGI 272

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                        G             +    ++         +         +      
Sbjct: 273 LDKTALTKGTLKLGHATDGLDGAKQLSIELDFTKLTSYAADKGAKSDAAALEINGYASGK 332

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +   ++   ++  ++ +   +      +A       LL+   N   + E + S      
Sbjct: 333 IDDFTISTTGEIEANFTNGSRQILGRVGLANFKNPAGLLKTGGNM--YRETSNSGEVMFG 390

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 F  ++        V++  E + +I  ++ +  ++++I  +D+MLQ ++   +
Sbjct: 391 YAGTGGFGALNPGAIEMSNVDISREFTDMITTQRGFQANSRIITTSDEMLQEIVNMKR 448


>gi|330826761|ref|YP_004390064.1| flagellar hook-associated protein FlgK [Alicycliphilus
           denitrificans K601]
 gi|329312133|gb|AEB86548.1| flagellar hook-associated protein FlgK [Alicycliphilus
           denitrificans K601]
          Length = 660

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 123/412 (29%), Gaps = 14/412 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N     Y R+                    V V T
Sbjct: 2   SLLNVGARALLANQVALQTTGHNIANVSTAGYSRQSVAMQTVQGQFTGSGYIGNGVNVAT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
               +  +  +   A  +      +     +  + +       +     I+ + +SL   
Sbjct: 62  ILRNHNELLTRQAAAAQAVQSGDSVRAERLSQLQDVFQ--GSTSGLGAAITDMLNSLADV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + ++       +    E+     +SA ++Q+I+    ++++ + + + +  S +   N
Sbjct: 120 VASPNDITARTVTLTRMNEMAARMRSSAEQLQEIQYSVTEQLKNDATRINQLASGIAEAN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           + I     +    +D LD+RD L++++++ I  + I  ++  + V+      L       
Sbjct: 180 EQIARVRGNGQSPNDLLDKRDQLIRELNQYIQTTQIPADDGSVGVFVGGSQALVLGSTAT 239

Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 +     S    +  +  G      +   +  G++  LL+  ++ +   +N L  
Sbjct: 240 SVSVDESQLFPGSGQMRLLFNRPGATPVELEEGMLGGGEVAGLLRFVNNDLAEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  +  + + +       +  PG  +      +          +I +    + +P+   
Sbjct: 300 MALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFA 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +        +    D         N               T     
Sbjct: 360 ASDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAG 411



 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 104/368 (28%), Gaps = 11/368 (2%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +   + +      +    +  +   ++   VQ       +       + +   ++   
Sbjct: 301 ALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFAA 360

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            +  ++F T          D +      ++++ G        +      +    LF+   
Sbjct: 361 SDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAGERVLFKPFA 420

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         +  + ++    + ++N  +A         LQ+ +         L  
Sbjct: 421 SA----------AANIQSLVYSPRDLAAANPVNAAMGTSNTGTLQLAELKAEGPTLTLPP 470

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    +    I       P        +           ++       + +   + 
Sbjct: 471 DGDTANTPPAFPGGIQLQFHAGPPATFDVVNQGAAPPTTVATGQSYTPGQPIQIDGWSIT 530

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWL 411
             G+        V N         +  ++ N + +       +    TL +     +  +
Sbjct: 531 LQGTPQDGDTVTVGNALDPQYGDGYTRNAGNASALMRLRDVKMFDESTLSDGYAGLMAQV 590

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +      S  + +++  S +   GVNL EE + LI+ +Q+Y  S K++     +
Sbjct: 591 GTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQASAKMLQIAQNI 650

Query: 472 LQTLLEGV 479
              L++ +
Sbjct: 651 FDNLIQSM 658


>gi|88858143|ref|ZP_01132785.1| flagellar hook protein [Pseudoalteromonas tunicata D2]
 gi|88819760|gb|EAR29573.1| flagellar hook protein [Pseudoalteromonas tunicata D2]
          Length = 492

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/496 (10%), Positives = 117/496 (23%), Gaps = 29/496 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55
            FN A +    A +       NI N +   +                     +N   V  
Sbjct: 2   SFNIALSGLKAAQKDLDVTANNIANVNTYGFKESRAEFADVFSTSLFSNAKTQNGEGVLT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L   S+A+        F    +   + D             +   ++  
Sbjct: 62  QVVAQQFHQGSLLFTSNALDMAINGNGFFVTTDSPLSRDFT----YTRSGAFKLDADNRL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                D L    ++    V     ++   +Q   +         +       S    ++ 
Sbjct: 118 VTAGGDFLQGLPVNEDGSVKSVSLSTTAPIQIPDSAGSPSATGAVDMSFNLDSNAKALDP 177

Query: 176 ----AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF--- 228
                +   T +   +    D            + ++     N    V  S    L    
Sbjct: 178 YKFNPLDTTTYTASTSTVIYDSLGNSRIASFYYVKVADPTTTNAAATVPGSGFDALPADP 237

Query: 229 ---ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                    + F  +       +   +  D +   +        G           ++  
Sbjct: 238 NDATNANSWVMFSTVTDDAGVQKKVDLGNDLLSGGAPDARTFSTGDPVGDPTSHTGMLLQ 297

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG---IKDLDNKLCQGISETICVNP 342
           F +    +A       +E      N    P          +        Q  +  +    
Sbjct: 298 FDSSGSPVASTFPVPKTEPLGTPLNVTITPPPTAPYDGASVVTNGANPDQQFNINMSNLT 357

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q+ S                    ++ G   +   Y +   +      +A       L +
Sbjct: 358 QFSSAFEITALSQDGQTVGRLTGISIGGDGLIEAKYSNGDAQAISKVALARFPNEQGLTQ 417

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                  W     S            F  I         VNL  EL  LI  ++++  ++
Sbjct: 418 IGN--TSWTPSRESGEALAGEPDSGTFGSIRSGTLEQANVNLTGELVDLIAAQRNFQANS 475

Query: 463 KLIMFTDKMLQTLLEG 478
           + +   +++ Q +L+ 
Sbjct: 476 RALEVNNQISQNILQI 491


>gi|119953082|ref|YP_945291.1| flagellar hook protein FlgE [Borrelia turicatae 91E135]
 gi|119861853|gb|AAX17621.1| flagellar hook protein FlgE [Borrelia turicatae 91E135]
          Length = 442

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/490 (10%), Positives = 120/490 (24%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDGRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          +    +                  NNS          
Sbjct: 61  GVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  N +  +  +  +  +    Q  NTSA     +    DKE      ++      
Sbjct: 121 DSNRCLVNPANGMRIQGWMAKSIGGEQVINTSADVEDLVIPIGDKESAKATEHI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++++ +  + ++      N  +  +   T++ E
Sbjct: 175 ----------------TFACNLDKRLPIIEEGASEVDVARGTWVVNKTIYDSFGNTSVVE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++ T    +  + ++G   S+       +G + +L              
Sbjct: 219 LR------VVKDTTTPNLWNATVLVNGETNSNFTIGFNNEGALLSLN------------- 259

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                    G   +          V       G +   N     +        Q+    +
Sbjct: 260 ------GQAGQPGDLLEFPITFGVVNANAGEVGEQQTINLRLGNVGSYTDSITQFADAST 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +    +  
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGIIMGVYSNGIRRDIGKIALASFVNPGGLAKVGDTNFS 373

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
             E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 374 --ETSNSGQARIGETGLAGLGTIRAGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|167034937|ref|YP_001670168.1| flagellar hook-associated protein FlgK [Pseudomonas putida GB-1]
 gi|166861425|gb|ABY99832.1| flagellar hook-associated protein FlgK [Pseudomonas putida GB-1]
          Length = 680

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 144/404 (35%), Gaps = 15/404 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ +   +  + +    +    NI NA    Y R+ T+                  T+
Sbjct: 1   MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTIQAAGASHNIGAGFLGTGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   +S        Q      + + AD   +   +  ++    +L+
Sbjct: 61  ADVRRIYSSYLDNQLQTATSLQADSVAFQDQITSIDKLLAD--RDTGISSVLTAFFSALQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +    +    + ++  A+ +   FN  + ++ +  A  + +++     + +  + +  
Sbjct: 119 TAAAKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTASIAE 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N  I   + + +  +  LD R   +++++E++G++   R + +  VY   G +L     
Sbjct: 179 YNKQIAAASGTGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGNK 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +    +  +   +     + I+    SS+  S V  G I  LL+ R  V+    N+L  
Sbjct: 238 ANTLSVEPGAADKSQA--SLRINYESFSSDVTSVVTGGAIGGLLRYRQDVLTPSMNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+  S + +     ++    G  +   I        + ++ +   +     + +   
Sbjct: 296 VALVVADSINSQLGQGLDANGQFGSSLFSSINSATALAQRSLASSNNSSGSGNLDVTIAN 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            G   +  +     +   Y    +   D  + +   +P   I+ 
Sbjct: 356 SGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNANPAPVIDG 399



 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 68/256 (26%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G+        +           +   N         +  +   +  G   AL+Q      
Sbjct: 425 GSITTTLTDANKLAFAGPISATSGSGNSGTGTITQPTLGESLDIYGGADTALIQQSIRDS 484

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +   D  +    G                     + +      L    +     +  
Sbjct: 485 MPVRVVFDAASGGSQGYKLFDAKGTQIGTGSVVPGTDNKLSIAVPMLDAAGNPIKDASGN 544

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            R+       GGS +    + +   A       +               G     +    
Sbjct: 545 PRTFSVETTIGGSPAANDSFTLSFNADGKADNRNATALLGLQTKSTVNTGSGGGTSFTSA 604

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +    + +      ++ V    SES S   GVNL +E + L+K +  Y  S++
Sbjct: 605 YASLVERVGAKANQATIDTTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQ 664

Query: 464 LIMFTDKMLQTLLEGV 479
           +I    +   TL+  +
Sbjct: 665 IIKAAQETFSTLINAL 680


>gi|71906397|ref|YP_283984.1| flagellar hook-associated protein FlgK [Dechloromonas aromatica
           RCB]
 gi|71846018|gb|AAZ45514.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB]
          Length = 683

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/437 (12%), Positives = 144/437 (32%), Gaps = 23/437 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + + A    N A     +   NI N + + Y R+  +   +           +   V
Sbjct: 1   MSGLISIAVTGINAAQAGLLTTTNNISNLNTEGYTRQRVVQASNPTVMTGAGGFGQGAHV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT         ++ +    + +          +L + M AD+      T  I    D ++
Sbjct: 61  VTVERMYSEALNRQVLNAQAKVSSLDTYYGQVSLIDNMLADEKA--GLTPAIQSFFDGIQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S     ++++  A+ +V +F +    + ++ +  + +I   + ++  +  ++  
Sbjct: 119 AVATNPSSTSARQSMVSAADSMVSSFRSMYSRLDELESGVNSQITSVVKSINSYTGQIAD 178

Query: 173 VNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I   ++ +    +D LD+RD L+  +++++ + T   ++    V+   G  L    
Sbjct: 179 LNQKIVSSSSLNGQPVNDLLDKRDQLVADLNKLVKVDTSKNDDGSYNVFVGTGQQLVVGS 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    ++   +     +  +   +     S +  G++  LL  R   +    NQL 
Sbjct: 239 RATSMAAVGSAADKSRIVVGLVGETGDIQELPESLISGGELGGLLSFRREALDTAFNQLG 298

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            MA  +  +F+ ++ +  +                 +        T+       +  +  
Sbjct: 299 LMAASVSKTFNAQNALGQDLLGNT----------ASSSSFIKDFFTLSDPTAVANTKNAS 348

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                VS        N   +   +N      + +     +  ++ N T    +  ++   
Sbjct: 349 TSTAVVSVTLNGASYNGTNFYTKLNASDYQLSYDGTNYALKRLSDNTTWTGASPAAVSAT 408

Query: 412 EKNRSDSHDLHMKSQVV 428
                   D        
Sbjct: 409 ADQGFSLTDNGGTYAAG 425



 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/455 (9%), Positives = 108/455 (23%), Gaps = 22/455 (4%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSS-AIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                 +V                 S   +G        + L E + +        +   
Sbjct: 228 VGTGQQLVVGSRATSMAAVGSAADKSRIVVGLVGETGDIQELPESLISGGELGGLLSFRR 287

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR-------EVQKIRADADKEIE 157
             L  +        +         +   + +     S+         +    A A+ +  
Sbjct: 288 EALDTAFNQLGLMAASVSKTFNAQNALGQDLLGNTASSSSFIKDFFTLSDPTAVANTKNA 347

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS------TIV 211
              + +          N    +   +  D     D  +  L+++S+    +         
Sbjct: 348 STSTAVVSVTLNGASYNGTNFYTKLNASDYQLSYDGTNYALKRLSDNTTWTGASPAAVSA 407

Query: 212 RNNNDMVVYTSDGT-------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             +    +  + GT        +  T  +   F    S                 +    
Sbjct: 408 TADQGFSLTDNGGTYAAGDRFLIQPTRDQARLFSVDTSVAADPRLVAAATPVRASAGVAN 467

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS-EKDPIAGNSENVPGLFIADGI 323
           S        ++        P+    L           S    P+            +  I
Sbjct: 468 SGTAAVSNVSVGPNYVIPTPVASFSLGLTYSSTTTPPSLSGFPVGTTVTVQGATPSSFTI 527

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
               + +       I ++    S                 +   +A     +    +   
Sbjct: 528 AATTDPVTYKSGAKITISAPVASGLPNGISLVLSGIPNGGDTFTIATNTSGVEDGSNIVR 587

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              +      +  N T  +   + +  +    + +         +    + +  +  GVN
Sbjct: 588 LGSLQTQNTMLGGNATYQDNYASFVNDIGNKTASAEVSSEAQTTMLTQATAAKESLSGVN 647

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             EE + L++ +Q+Y  + K++    K+  TL+  
Sbjct: 648 RDEEAAKLVEYQQAYQAAAKVLEIAGKLFDTLISI 682


>gi|163738039|ref|ZP_02145455.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis
           BS107]
 gi|161388655|gb|EDQ13008.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis
           BS107]
          Length = 440

 Score =  137 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/489 (10%), Positives = 132/489 (26%), Gaps = 65/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M++ +  N      +  + + ASI  NI NA    Y R  T       + S    +    
Sbjct: 8   MTISSSLNAGVAGLSANASRLASISDNIANASTPGYKRVQTDFHSMVMSSSGGAYSAGGV 67

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPTHYISKLRDSL 111
           R+ N  + D+   L   S+A       +    +  +   +    N        +  R + 
Sbjct: 68  RTTNVRLIDERGPLVTTSNATDLAVRGRGMLPVASINEVETGATNPQMMLTTTASFRTNA 127

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +      S  +L      +   +      ++  ++ +R + +K      + +   ++   
Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIPPYARDTSDALEPVRFNVNKLSGEPTTEMSLGVNLPA 187

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              ++    T+       + +       +I  +  +     +N   ++ T          
Sbjct: 188 TATESTSAGTSENLSIEYYDNLGKSESLQIEFVPTVPGTGESNEWTMIIT---------- 237

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                            +      G    +   +    G + A+              + 
Sbjct: 238 ---------------DTATGGTPIGEYTLTFDDNRTSGGALNAVTATTGGAYAPATGSII 282

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                     +                              G         Q     +  
Sbjct: 283 VTVAGGPMEIN-----------------------------IGTLGDDNGLTQLSDTFAPA 313

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 +    +    +     +  +Y    ++     P+  +     ++   R    ++
Sbjct: 314 SISKDGAPVGNFTGVEIDEAGFVHANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQ--TYM 371

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + S S+ L    +     I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 372 PSSESGSYFLWNAGEGPTGDILGYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEM 431

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 432 LQETTNIKR 440


>gi|291558291|emb|CBL35408.1| flagellar hook-associated protein FlgK [Eubacterium siraeum
           V10Sc8a]
          Length = 503

 Score =  137 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/503 (11%), Positives = 152/503 (30%), Gaps = 46/503 (9%)

Query: 17  ASQQFASIVRNIENADNKNYVRRD------------------TMTTISPENVTVVTQRSE 58
           A +       N+ N D   Y R+                       +S + V        
Sbjct: 2   AQKALDVTGNNLSNRDTVGYTRQRLDVYSSYMNMNGIYTTKLARLGLSSQGVFASGVSQT 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM---SADDHYNNSPTHYISKLRDSLESYS 115
             +  DK    +S  + +     S  +  E      +D + N    +   + + +L  Y+
Sbjct: 62  RDDYLDKRYRDNSCYVSEYNQQASIMSEIETALTNFSDTYENVGMAYQFDQFKSALRKYA 121

Query: 116 KNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           ++ ++ + L   V + A  + + F   + +++ +      ++   + +  R + E+   N
Sbjct: 122 EDSADREELASVVRNQAYNICKLFTQQSMDLKNLENQTLYDLHSTLEDANRIIEEIVEYN 181

Query: 175 DAIKF--------------KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             I                     +  ++ LD R+ L+ ++SE   I      +  + + 
Sbjct: 182 KQIVNEYAITGADLIYNGLSVTGGYGPNEMLDARNNLIDQLSEFGDIHVDDNFDGSVKI- 240

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           T  G T+ +    ++     +     ++        + ++      +  G IKA   + +
Sbjct: 241 TMGGLTIIDGKKSNLFVTGKDFDAYNAKYEENGAVVLKLTDGNDMVLESGSIKAYTDMIN 300

Query: 281 SVVPIFQN----QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                                      K      ++   G    D +           + 
Sbjct: 301 GNGAYASGKQTTDYGIKYYQSAVDEFAKQFAGLMNKLNGGDESDDRLMFTSADGSPINAG 360

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            I ++  +  + + +    +          NL G                    +   + 
Sbjct: 361 NIRISDAWLKDATMIAKIYNEKTGTYDYPVNLDGNA-----VNKLLLGMDDSVQIGKGDY 415

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             +  ++       L +N   +             + +S    +GV+  EE   ++   +
Sbjct: 416 EGSSYDFILFLNNRLAQNIEFAEKQCDMYTETATSLLDSRDAIMGVSETEEGVNMLNYSK 475

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
            +N S++++   D+ L T++E +
Sbjct: 476 WFNASSRMLTTLDEALDTIIEKM 498


>gi|257095353|ref|YP_003168994.1| flagellar hook-associated protein FlgK [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047877|gb|ACV37065.1| flagellar hook-associated protein FlgK [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 681

 Score =  137 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/449 (10%), Positives = 132/449 (29%), Gaps = 18/449 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +   +    N A     +   NI NA    + R+ T+   +           +   V 
Sbjct: 3   TGMIGSSLTGINAAQLGLQTTEHNIANASTPGFSRQRTVQASNPGVQSGAGFIGQGTHVA 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T            ++   ++  +     +  A  + M AD   +   +  +      ++ 
Sbjct: 63  TIERMYSRFLSDQVNRSQASASELASYSAQIAQIDNMLADT--STGLSPALQGFFKGVQQ 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++    + +I +A+ +   +     ++ ++    D E+   ++ +  +  ++  +
Sbjct: 121 VAANPTDLPSRQAMISSAQALSGRYQALGVQLAQMYDGVDAEVAASVTAINSYAEQIASL 180

Query: 174 NDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           N+ I     ++    +D LD RD L+  +++++  +T V ++ ++ V+   G  L     
Sbjct: 181 NERIGVAAASTGQPPNDLLDTRDRLVLDLNKLVKATTTVSSDGNLNVFIGSGQQLVVGSQ 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   ++   +     +    + V       +  G +  LL  R   +    N+L  
Sbjct: 241 FTALTTTPSASDRSRLVVALKT-AIGVQEMPERLINGGSLGGLLAFRRESLDKVSNELGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A  L  +F+ +  +  +      L  +                          +P+   
Sbjct: 300 NAASLALTFNAQSALGQDLLGQSQLSSSPSSFT-PAFFSLPAPTVFANATNPAGSPTLTA 358

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                         +L      ++          + D    +     L       +   +
Sbjct: 359 AFVDPPPYSGNFYTDLGSSDYRLSGDAAGVTLTRLSDNK--VWAGADLAAINAALVTDPQ 416

Query: 413 KNRSDSHDLHMKSQVVFNH-ISESYSNTV 440
                +    +            +  N  
Sbjct: 417 GFTLTASLGDLTGSSYLIQPTRNAALNIS 445



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/466 (11%), Positives = 114/466 (24%), Gaps = 24/466 (5%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ------RLLQSFEALKEMM 90
               T+++    NV + + +          L    SA  +       +     + + E +
Sbjct: 214 KATTTVSSDGNLNVFIGSGQQLVVGSQFTALTTTPSASDRSRLVVALKTAIGVQEMPERL 273

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                           L        +N +   L         + +   +  +        
Sbjct: 274 INGGSLGGLLAFRRESLDKVSNELGRNAASLALTFNAQSALGQDLLGQSQLSSSPSSFTP 333

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                    +       +    +  A         + +  L   D  L   +  + ++ +
Sbjct: 334 AFFSLPAPTVFANATNPAGSPTLTAAFVDPPPYSGNFYTDLGSSDYRLSGDAAGVTLTRL 393

Query: 211 VRNNNDMVVYTS--DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
             N        +  +   + +     +     +    +    P     + +S N      
Sbjct: 394 SDNKVWAGADLAAINAALVTDPQGFTLTASLGDLTGSSYLIQPTRNAALNISVNPAVVAD 453

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN----VPGLFIADGIK 324
              I A   +R SV           A  +   +    P+A            L       
Sbjct: 454 ARLIAAGGPVRTSVGKGNSGAAVISAGSVGPGYPGAVPLATGPITLRFQDGKLLDFPAGA 513

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            +        +  +        +   L D   VS         ++G P+  + +  S N 
Sbjct: 514 QVSINGGVPAAVPVAGLDYRSGDSITLVDPAVVSTPPAGFSFTISGLPNNGDTFVISRNT 573

Query: 385 NFIFDP------------VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
               D                     T  +     +                 Q +    
Sbjct: 574 GGTADSRNALALGQLQVQNTMSGKTATYQDAYAQLVSQTGSKTRQIQVSGEAQQALLEQA 633

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             S  +   VNL EE + LI+ +Q+Y  S K +     + +T+L+ 
Sbjct: 634 QASRDSLSAVNLDEEAANLIRYQQAYQASAKALQIGANLFETILQL 679


>gi|83595982|gb|ABC25342.1| flagellar hook protein [uncultured marine bacterium Ant24C4]
          Length = 437

 Score =  137 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/489 (10%), Positives = 130/489 (26%), Gaps = 61/489 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55
           M++ +  N      +  + + A+I  NI N+    Y R  T              T    
Sbjct: 1   MTISSSLNAGVAGLSANATRLATISDNIANSSTFGYKRAVTDFQSLVIENSNSKYTAGGV 60

Query: 56  RSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSL 111
           R+    + D    L + ++        +    +    S      +           R   
Sbjct: 61  RTTTTRLIDERGSLVSTTNPTDLAVRGRGLLPVTSEASVQVANGDHPLLLTTTGSFRPDE 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + Y ++ S  +L     +    +  N   S   ++ I+ ++++      + +        
Sbjct: 121 DGYLRSPSGLVLMGWAANADGTIPTNPRDSVDGLEPIKINSNQFAGEPTTEVN----LAV 176

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +        ++  D    ++  D L +  + ++  +                      V
Sbjct: 177 NLPATSTEAGSATGDETLSIEYFDNLGKSANLLMTFTPT--------------------V 216

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P      +       S      +    +S +  S    G +  +       +P   +   
Sbjct: 217 PATGTANEWQLQIADSAGGGAVVGSYQLSFDP-SRAGGGTLLGVTDNLGVGLPTEYDPAT 275

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
               + +     +  I                             +     Q     +  
Sbjct: 276 GSVTLNVDGGPLELAIGT-------------------------LGSATGLTQLSDTFAPT 310

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               + S        ++     +   +    N+     P+  ++    L    +    + 
Sbjct: 311 SISKNGSAVGSLTAIDVDVNGFVRASFDSGINRVLYQVPLVDVSNVNGLESLDQQ--SYR 368

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S +  L          +          ++  EL+ LI+ +++Y+ + K+I   D+M
Sbjct: 369 VSPDSGTFFLWDAGDGPTGDVVSFAREESSTDVAGELTQLIQTQRAYSSNAKVIQTVDEM 428

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 429 LQETTNIKR 437


>gi|56460246|ref|YP_155527.1| flagellar hook-associated protein [Idiomarina loihiensis L2TR]
 gi|56179256|gb|AAV81978.1| Flagellar hook-associated protein [Idiomarina loihiensis L2TR]
          Length = 671

 Score =  137 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 139/441 (31%), Gaps = 14/441 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-TTISPENVTVVTQRSEN 59
           MS   + N  +N      Q   +  +NI N +  +YVR  T     S   +  V      
Sbjct: 1   MS-FDLLNIGKNGILAHQQSLQTTGKNINNTNTDSYVRERTEYFESSYGGLERVRVERMI 59

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
               ++ L    S +             + +  D     +    +    ++L+  + +  
Sbjct: 60  DQFANRQLRTDISRVSYYEANLQQAEQLDTLLGD--STTNVASSVESFFNTLQDANNDPG 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                + V+  A+ +V  FN  +  +   ++  +  ++L    +      L  +N  I+ 
Sbjct: 118 SVTARQLVLAEADAMVTKFNDFSSYLNDQKSIINDRLKLSTDRINSISENLAELNSKIQS 177

Query: 180 K---TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                ++  + +  L++RD  L++++E++  ST+ + N  + V   +G  L     R   
Sbjct: 178 SGGENSANGNINALLNKRDEQLRELAELVQFSTVEQKNGAIAVNLKNGQPLVLEDGRFNA 237

Query: 237 FEKMNSYTVTSESNPIF---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
               ++         +      G +      +    G +   L+ RD V+   Q +L ++
Sbjct: 238 VAVKSNPDTERLEMVLRKEHSGGSISEFYVPTDEVGGSVGGYLEYRDEVLMPTQKRLGQL 297

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  +  S + ++    + +N  G  I D  K     L    +             +    
Sbjct: 298 AIRIADSMNTQNQKGMDLDNQLGSKIFDLAKTESQALPYSDNGGTGEISVSVLEGNSKSF 357

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-E 412
                              +++    D    +          +  T+          L  
Sbjct: 358 PSEN---LRITKTGNPDEYEIVPVNSDGTVVSGADTITVTQASPGTVDIVELGVSLDLSG 414

Query: 413 KNRSDSHDLHMKSQVVFNHIS 433
              +    L   ++   + IS
Sbjct: 415 AANAGDQFLAKPAEGAASEIS 435



 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/399 (11%), Positives = 122/399 (30%), Gaps = 38/399 (9%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV----ND 175
              +G  +    E ++       +   +I    + + +  +    +  S++  +    + 
Sbjct: 273 GGSVGGYLEYRDEVLMPTQKRLGQLAIRIADSMNTQNQKGMDLDNQLGSKIFDLAKTESQ 332

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT-SDGTTLFETVPRD 234
           A+ +                      SE + I+     +   +V   SDGT +       
Sbjct: 333 ALPYSDNGGTGEISVSVLEGNSKSFPSENLRITKTGNPDEYEIVPVNSDGTVVSGADTIT 392

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP----------------KGKIKALLQI 278
           +      +  +      + + G   + +Q  A P                   +   +++
Sbjct: 393 VTQASPGTVDIVELGVSLDLSGAANAGDQFLAKPAEGAASEISLAIRRPEDIALANPIRV 452

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
           +D +       ++  +      + +             + I     +  +          
Sbjct: 453 KDGLDNQGAASIEINSINTPDDYYDTANNTLLGSAPARIEITGQTGNAYDLEVFDKDGNS 512

Query: 339 CVNPQYRSNPSFLRDGGSVSKK---FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                  ++ + +     ++        N +   G   +I +  + F+ N     +A + 
Sbjct: 513 IGTVTGTTDLNGILSQAGLADPDYEVDINGEPAVGDEYIIEYNTNGFDDNSNGQSMADLQ 572

Query: 396 --------------TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                           +T  E     +  +    S +  L   ++ + +     Y +  G
Sbjct: 573 RQQLVRRSGGEEAEPTMTFNESYGRLVSDVGSRVSQNRVLRDSAEAIRSQTEALYESQAG 632

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           VNL+EE + LI+ +Q+Y  S ++I  +  + +TLL  ++
Sbjct: 633 VNLEEEAANLIQYQQAYTASARIITTSQAIFETLLTSLR 671


>gi|27363699|ref|NP_759227.1| flagellar hook-associated protein FlgK [Vibrio vulnificus CMCP6]
 gi|27359815|gb|AAO08754.1| flagellar hook-associated protein FlgK [Vibrio vulnificus CMCP6]
          Length = 638

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/448 (12%), Positives = 145/448 (32%), Gaps = 18/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQATNDPRQFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++    +  +++   +   M +           +++  D+L++
Sbjct: 63  NVRRSWDQFAVNELNLSTTNFANKGDVEANLEMLSSMLSSVASKK-IPENLNEWFDALKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K +++ A  + +  N     +++     +K++++ I  + +   E+  +
Sbjct: 122 LADSPNDIGARKVLLEKARIISETVNGFHETIRQQYDVTNKKLDMGIERINQIAVEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L++++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVKELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +      +G  +     S    GK+ A+L +RD+ +P   ++L  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAIYEGKSLKP-IKSVGLDGKLGAMLDMRDNQIPYVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       ++      +     G  I   +        + ++       +     + L 
Sbjct: 297 MAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDS-QAEVAVFINDLA 355

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     ++  N             S +       + G+   V     A   I    
Sbjct: 356 SLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRNEPKAGEKILLRP 415

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
              S +      +           ++T 
Sbjct: 416 TRNSAAQMQVATNDASMIAAQSYEASTS 443



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/354 (9%), Positives = 101/354 (28%), Gaps = 17/354 (4%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
             ++  +  +  +        + +   +   +   I     +  +A      R V     
Sbjct: 284 DNQIPYVMDELGRMAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDS 343

Query: 202 SEIIGISTIV----RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV-TSESNPIFIDG 256
              + +        +     + Y     T+ +     ++    ++ +    +   + +  
Sbjct: 344 QAEVAVFINDLASLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRN 403

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS----- 311
              +  +    P     A +Q+  +   +   Q  E +       ++ + +A        
Sbjct: 404 EPKAGEKILLRPTRNSAAQMQVATNDASMIAAQSYEASTSFAQGTAQFNILAAGDLREFE 463

Query: 312 -------ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                  +    +     +             ++ +   + S          ++     N
Sbjct: 464 VIVSPQGDQFAVIDTKGNVVRSPEPYPPKGPVSVTLPSSHPSYKEGKETVFELTAGAWAN 523

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            K  A          +      I           T+++   N    +    S +  L   
Sbjct: 524 DKFTANLVPSEGDNGNLRKMQQIQLDKKMDGNQSTIIDVYHNLNTNVGLRNSTATRLANI 583

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +Q       E  ++  GVNL EE + +++ +Q+Y  S++++   +    T+L+ 
Sbjct: 584 AQHENEAAQERIASISGVNLDEEAANMMRFQQAYMASSRIMQAANDTFNTILQL 637


>gi|319764545|ref|YP_004128482.1| flagellar hook-associated protein flgk [Alicycliphilus
           denitrificans BC]
 gi|317119106|gb|ADV01595.1| flagellar hook-associated protein FlgK [Alicycliphilus
           denitrificans BC]
          Length = 660

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 123/412 (29%), Gaps = 14/412 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N     Y R+                    V V T
Sbjct: 2   SLLNVGARALLANQVALQTTGHNIANVSTAGYSRQSVAMQTVQGQFTGSGYIGNGVNVAT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
               +  +  +   A  +      +     +  + +       +     I+ + +SL   
Sbjct: 62  ILRNHNELLTRQAAAAQAVQAGDSVRAERLSQLQDVFQ--GGTSGLGAAITDMLNSLADV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + ++       +    E+     +SA ++Q+I+    ++++ + + + +  S +   N
Sbjct: 120 VASPNDITARTVTLTRMNEMAARMRSSAEQLQEIQYSVTEQLKNDATRINQLASGIAEAN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           + I     +    +D LD+RD L++++++ I  + I  ++  + V+      L       
Sbjct: 180 EQIARVRGNGQSPNDLLDKRDQLIRELNQYIQTTQIPADDGSVGVFVGGSQALVLGSTAT 239

Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 +     S    +  +  G      +   +  G++  LL+  ++ +   +N L  
Sbjct: 240 SVSVDESQLFPGSGQMRLLFNRPGATPVELEEGMLGGGEVAGLLRFVNNDLAEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  +  + + +       +  PG  +      +          +I +    + +P+   
Sbjct: 300 MALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFA 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +        +    D         N               T     
Sbjct: 360 ASDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAG 411



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 104/368 (28%), Gaps = 11/368 (2%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + +   + +      +    +  +   ++   VQ       +       + +   ++   
Sbjct: 301 ALAIGTTMNYQQTQGLTLDGQPGKPLFSTPSSVQGYTQGTAQGSIDLTDSSKFSPTKFAA 360

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            +  ++F T          D +      ++++ G        +      +    LF+   
Sbjct: 361 SDYEVRFTTPPAGQVVRLSDGKTTAFTDLNDLRGQQIDGLTFDFATAGAAGERVLFKPFA 420

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         +  + ++    + ++N  +A         LQ+ +         L  
Sbjct: 421 SA----------AANIQSLVYSPRDLAAANPVNAAMGTSNTGTLQLAELKAEGPTLTLPP 470

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    +    I       P        +           ++       + +   + 
Sbjct: 471 DGDTANTPPAFPGGIQLQFHAGPPATFDVVNQGAAPPTTVATGQSYTPGQPIQIDGWSIT 530

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWL 411
             G+        V N         +  ++ N + +       +    TL +     +  +
Sbjct: 531 LQGTPQDGDTVTVGNALDPQYGDGYTRNAGNASALMRLRDVKMFDESTLSDGYAGLMAQV 590

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +      S  + +++  S +   GVNL EE + LI+ +Q+Y  S K++     +
Sbjct: 591 GTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQASAKMLQIAQNI 650

Query: 472 LQTLLEGV 479
              L++ +
Sbjct: 651 FDNLIQSM 658


>gi|332533169|ref|ZP_08409038.1| flagellar hook-associated protein FlgK [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037451|gb|EGI73905.1| flagellar hook-associated protein FlgK [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 667

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 147/442 (33%), Gaps = 7/442 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MS   + N A +    +S+   +  +NI N + + YVR  T  T      V         
Sbjct: 1   MS-FNLLNIASSGVRASSELLQTTSKNIANVNTEGYVRERTEFTTMVDNQVGRGETYRLL 59

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L+  +S         +     + + +++  +N+ +  I+ L ++++      S
Sbjct: 60  NEFAQSQLNRDTSNKSFFDQFITEANRVDTIFSEE--SNNLSTGINSLFNNVQEALNQPS 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK- 178
             +    V+ +A+ ++   +  +  V   ++  ++++E+        +  ++ +N  I  
Sbjct: 118 STVARSLVMTDAQSLIDQMDRLSGIVLDQKSIVNEQLEIFSDEANSLIQSISTLNQNIAA 177

Query: 179 -FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              T +  DA    ++RD  ++ +SE+I I T+   N + +V+   G  +         F
Sbjct: 178 VNGTNNAADASSTYNERDKAIRDLSELIDIETLDGPNGEKLVFMGTGEAVVMQNGAFNLF 237

Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                     +   + ++G   V      +  KGKI  LL  RD ++   QNQ+ +M   
Sbjct: 238 SMTGDPDPNFKEFTLDVNGGKAVPLEVDVSKLKGKIGGLLAFRDDILVPAQNQIGQMGLA 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +  +F+E++ +  ++    G  I +                           S L     
Sbjct: 298 IADAFNEQNKLGMDATGQLGGNIFNIPTVGAYAYQANTGTAGMTATVEPGKGSELPASDF 357

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           +        +      D         +   I   V   +T        + ++        
Sbjct: 358 IITYTGNANEVSIQPIDNKGDPLGQPSLADISTGVIDSSTTTGESFGLQVNVSGAGVEGD 417

Query: 417 DSHDLHMKSQVVFNHISESYSN 438
                          ++   + 
Sbjct: 418 QFQIKLNSDAASSITLATGRAE 439



 Score = 91.2 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 93/373 (24%), Gaps = 15/373 (4%)

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            D+      N+            A         +    +     A   I     N     
Sbjct: 310 MDATGQLGGNIFNIPTVGAYAYQANTGTAGMTATVEPGKGSELPASDFIITYTGNANEVS 369

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +          + +    +   +D      +     + +S      +   +  +     
Sbjct: 370 IQPIDNKGDPLGQPSLADISTGVIDSSTTTGESFGLQVNVSGAGVEGDQFQIKLNSDAAS 429

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             T+      +   +  + + ++   I    +S+ + ++V  G   +   + +  +    
Sbjct: 430 SITLATGRAEDLALASPIRTANDLNNIGTATISAGEVTSVTSGGFTSAPGLTNGEIT--- 486

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                +       +   D    N          + +  L         +          +
Sbjct: 487 ----LVKAAGTNDYLISDGNGTNVAVTIAPPGKNVLAGLGTPYDSYGFDFDIEGTPATGD 542

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              L               +       +    +        +  A  + + T  +     
Sbjct: 543 TFTLEFNEG--------GFDDNRNGLKLADLQNGELVRLNVETTATADNHKTFNQAYSGL 594

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +      +         +       Y +  GVNL EE + L++ +QSY+ S K++  
Sbjct: 595 VSDIGVITGQAITSGAAFDALAQQSEAWYESLSGVNLDEEAANLLRFQQSYSASAKVLAT 654

Query: 468 TDKMLQTLLEGVK 480
              +  TLL   +
Sbjct: 655 AQAIFDTLLNAAR 667


>gi|238919265|ref|YP_002932780.1| flagellar hook-associated protein FlgK, [Edwardsiella ictaluri
           93-146]
 gi|238868834|gb|ACR68545.1| flagellar hook-associated protein FlgK, putative [Edwardsiella
           ictaluri 93-146]
          Length = 550

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/551 (10%), Positives = 142/551 (25%), Gaps = 77/551 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  + A         NI N     Y R+      S             VTV
Sbjct: 1   MANLINNAMSGLSAAQTALGVTSNNINNVYTAGYNRQTVTLAESNGTSTPAGFIGNGVTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                +        L    +            +  + + AD    NS +  + K   +L+
Sbjct: 61  SGIDRDYNQFIVNQLRQGQTQEAALSTYHQQISQIDDLMAD--STNSLSANMQKFFKNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEV--------------------------------VQNFNT 140
           +     ++    +TVI NA  +                                 +    
Sbjct: 119 NLVSYPADSAARQTVISNANGLTAQFKSTDDYLRNLENGANLTVRNDAEQINDYAKQIAN 178

Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200
               + ++   +      ++ + R  ++        +         +  F     ++   
Sbjct: 179 LNNRITEMTGASGGTAPNDLLDQRDLMASNLNKIVNVDISMQDGAMSVSFAGGLSLVQGG 238

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN------------------- 241
            +  +       + +   +    G  L E     I+   +                    
Sbjct: 239 DAYSVKAIPSSNDPSHATLAYDRGNGLSEVPEARISGGTLAGVFRFRSEALENTRNQLGR 298

Query: 242 -SYTVTSESNPIFIDGVVVSSNQGSAVPK----GKIKALLQIRDSVVPIFQNQLDEMARV 296
            + ++ +  N +  +GV ++  +G  +        +     +  + +    +++      
Sbjct: 299 IALSMANAFNHVQSEGVDLNGEKGKPLFSIGKPEALANTNNLSQAHLSATYDKVGADNIT 358

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRD 353
              +   +    G  +           + L  K        + V        ++   L  
Sbjct: 359 HAQATDYQLKYTGGDKWQIIHLADGTQQTLAAKGDVLAFNGLQVKVDGKPEVNDSFKLCT 418

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI------FDPVAGINTNVTLLEYARNS 407
             +V   F   + + A          D    N              +  N TL       
Sbjct: 419 TSTVVSGFGVEISDPALLAAGSAKGKDDVGDNTNAQKMLDLQNQKIVGGNATLSGAYGGL 478

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    + +         V   ++    +  GVNL EE   L++ +Q Y  + ++I  
Sbjct: 479 VSTIGNQTNSAKVDSKAEGNVVKQLTIQQQSVSGVNLDEEYGDLVRFQQYYMANAQVIQS 538

Query: 468 TDKMLQTLLEG 478
              +   LL  
Sbjct: 539 AQSLFNALLNI 549


>gi|149911702|ref|ZP_01900310.1| flagellar hook protein FlgE [Moritella sp. PE36]
 gi|149805232|gb|EDM65249.1| flagellar hook protein FlgE [Moritella sp. PE36]
          Length = 435

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/483 (11%), Positives = 119/483 (24%), Gaps = 60/483 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +   +   NI N +   +                          V  
Sbjct: 2   SFNIALSGINAAQKDLNTTANNIANVNTTGFKESRAEFGDVYATSIFSNAKTSVGNGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L+   +++        F  + + + + D             +    S+ 
Sbjct: 62  SHIAQQFQQGSLNFTENSLDLAINGNGFFVMADGLESMDRN----YTRAGAFKLDANSFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + + L    +++          S + +Q        E    +       +   +++ 
Sbjct: 118 TNSAGNYLQVYDVNDDGSPKAVSMASTKPLQIPDTAGVPESTGNVDMTMNLPATSPLLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D      +  + I   +  ++ +  Y     T        +
Sbjct: 178 -------------TKFDPVDSGTYTAATSVSIYDSLGESHTLSTYYVKDGTAGAPANSWL 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            F  ++   V                   +         LLQ +  V+         +  
Sbjct: 225 EFNYVDDQPVDIVGGQAVASAPGTPVKPAALQLTFDSSGLLQQQLPVIAETVPLGAILTN 284

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                               Q I   I    Q+ S     +   
Sbjct: 285 G-------------------------------ADTSQTIKVNINNPTQFASAFEVSKLEQ 313

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        ++     ++  Y +  N       +A       L +      GW     
Sbjct: 314 DGATVGRLTGIDIGPDGMVLASYSNGRNDKLGMIAMAKFANEQGLSQTGD--TGWRASQL 371

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      +   F  I+ S      VNL  EL  LI  +++Y  +++ +    K+  T+
Sbjct: 372 SGAAIAGEANSGTFGKINSSALEQSNVNLTSELVNLITAQRNYQANSRTLEVNSKLQDTV 431

Query: 476 LEG 478
           L+ 
Sbjct: 432 LQI 434


>gi|224532235|ref|ZP_03672867.1| flagellar hook protein FlgE [Borrelia valaisiana VS116]
 gi|224511700|gb|EEF82106.1| flagellar hook protein FlgE [Borrelia valaisiana VS116]
          Length = 442

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/490 (10%), Positives = 117/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDTRG 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                  A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDVEDLIIPIGDKEGARSTKNV------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++Q+ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPVIQEGASSADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G +  L            N 
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALATL------------NG 260

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  ++      +    N   V      +                     Q+  + S
Sbjct: 261 QPSQKGDILQIPITFNVSGANVGEVGEQQTVNLKLGTVGSYT-------DSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQARIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|190574257|ref|YP_001972102.1| flagellar hook-associated protein FlgK [Stenotrophomonas
           maltophilia K279a]
 gi|190012179|emb|CAQ45802.1| putative flagellar hook-associated protein [Stenotrophomonas
           maltophilia K279a]
          Length = 626

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 133/449 (29%), Gaps = 16/449 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52
           + +V +          +  A+   N+ N +   Y R+                      +
Sbjct: 1   MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNFATADPQNYGYGTVGNGTRI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R     +    L   S  + + + L         + +D     + +   SK  DS+ 
Sbjct: 61  TDIRRTADQLAISRLLDSSGELARLKQLSGMADRVNSLFSD--AATNVSGVWSKFFDSVS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S N +     + ++D  + +   F      +  + ++ +  +    + + R   E+  
Sbjct: 119 GLSSNAAGTADRQNMLDGGKALANRFVQLNTHLNNLNSEVNNGLLAGATEVNRLAQEIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N AI   T     A D LD+RD L+ ++    G + ++++   M VYT+ G  L     
Sbjct: 179 INGAI--GTNIATAAPDLLDRRDQLITQLIGYTGGTAVIQDGGIMNVYTAGGNALVVGTT 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + Y        +   G  +  +  +    G+I  LL+ RD+V+   Q +L +
Sbjct: 237 ATKVTTVADPYQPERLQVALETQGNTIRLDPKA--VGGQIGGLLEFRDTVLTPAQAELGK 294

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  SF++      +     G    +                              +
Sbjct: 295 LAVGLAESFNQVHHQGVDLYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQ 354

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +         W         ++      +     + + V  +                  
Sbjct: 355 NVVLQFDGTNWKASRADTGANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAG 414

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVG 441
              S    +   S++      +  + T  
Sbjct: 415 VAGSMEVAITDPSRIAAAAAVKGAAATSN 443



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/373 (8%), Positives = 98/373 (26%), Gaps = 5/373 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +     + +         ++          +   +A+  K       +  +   +   
Sbjct: 253 QVALETQGNTIRLDPKAVGGQIGGLLEFRDTVLTPAQAELGKLAVGLAESFNQVHHQGVD 312

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +   +     +  +     +  +     +S     +  +   N  +    ++        
Sbjct: 313 LYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQNVVLQFDGTNWKASRADT 372

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++      +       N + +      +     + +        +  ++    +    
Sbjct: 373 GANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAGVAGSMEVAITDPSRIAAA 432

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +    + +                                       PQ  +    +
Sbjct: 433 AAVKGAAATSNTGTGKLSGVTVSDSTNANLRNPAAIVFTSATTYTIDGGPPQTYTPGQTI 492

Query: 352 RDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              G          + +  N+   P   +   ++   + +    A  +  VTL       
Sbjct: 493 SANGWSFVLDGAPKVGDTFNITPTPAGSSDNSNASRLSKVESAKAFNSGTVTLNGALGGL 552

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      +        V+ +   E+     GVNL EE + +++++Q+Y  +++LI  
Sbjct: 553 TTQVGAAARSAEYSLEAQLVINDKAQEARDEVSGVNLDEEAADMLRLQQAYQAASQLIST 612

Query: 468 TDKMLQTLLEGVK 480
            D M QT+L  V+
Sbjct: 613 ADSMFQTILGAVR 625


>gi|291531969|emb|CBK97554.1| flagellar hook-associated protein FlgK [Eubacterium siraeum 70/3]
          Length = 503

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/503 (11%), Positives = 152/503 (30%), Gaps = 46/503 (9%)

Query: 17  ASQQFASIVRNIENADNKNYVRRD------------------TMTTISPENVTVVTQRSE 58
           A +       N+ N D   Y R+                       +S + V        
Sbjct: 2   AQKALDVTGNNLSNRDTVGYTRQRLDVYSSYMNMNGIYTTKLARLGLSSQGVFASGVSQT 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM---SADDHYNNSPTHYISKLRDSLESYS 115
             +  DK    ++  + +     S  +  E      +D + N    H   + + +L  Y+
Sbjct: 62  RDDYLDKRYRDNNCFVAEYNQQASIMSEIETALTNFSDTYENVGMAHQFDQFKSALRKYA 121

Query: 116 KNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           ++ ++ + L   V + A  + + F   + +++ +      ++   + +  R + E+   N
Sbjct: 122 EDSADREELASVVRNQAYNICKLFTQQSMDLKNLENQTLYDLLSTLEDANRIIEEIVEYN 181

Query: 175 DAIKF--------------KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             I                     +  ++ LD R+ L+ ++SE   I      +  + + 
Sbjct: 182 KQIVNEYAITGADLIYNGLSVTGGYGPNEMLDARNNLIDQLSEFGDIHVDDNFDGSVKI- 240

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           T  G T+ +    ++     +     ++        + ++      +  G IKA   + +
Sbjct: 241 TMGGLTIIDGKKSNLFVTGKDFDAYNAKYEENGAVVLKLTDGNDMVLESGSIKAYTDMIN 300

Query: 281 SVVPIFQN----QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                                      K      ++   G    D +           + 
Sbjct: 301 GNGAYASGKQTTDYGIKYYQSAVDEFAKQFAGLMNKLNGGNESDDRLMFTSADGSPINAG 360

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            I ++  +  + + +    +          NL G                    +   + 
Sbjct: 361 NIRISDAWLKDATMIAKIYNEKTGTYDYPVNLDGNA-----VNKLLLGMDDSVQIGKGDY 415

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             +  ++       L +N   +             + +S    +GV+  EE   ++   +
Sbjct: 416 EGSSYDFILFLNNRLAQNIEFAEKQCDMYTDTATSLLDSRDAIMGVSETEEGVNMLNYSK 475

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
            +N S++++   D+ L T++E +
Sbjct: 476 WFNASSRMLTTLDEALDTIIEKM 498


>gi|1184296|gb|AAA87351.1| flagellar hook protein [Borrelia burgdorferi]
          Length = 442

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/490 (10%), Positives = 116/490 (23%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N       +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTIMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFYV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+      
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  L+Q+ +    I+      N  +  +    ++ E
Sbjct: 175 ----------------TFACNLDKRLPLIQEGASPADIARGTWVVNKSLYDSFGNVSVLE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T    +  + I+G   S+       +G + +L         I Q  
Sbjct: 219 LR------VVKDLNTPNLWNATVLINGEQNSNFTLGFDNEGALASLNGQPGQKGDILQIP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +                             +        Q+  + S
Sbjct: 273 ITFNVLGANVGEVGEQQTVNLKLGT-------------------VGSYTDSITQFADSSS 313

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     ++  Y +   ++     +A       L +       
Sbjct: 314 TKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAK--SGDTN 371

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 372 FVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|50120645|ref|YP_049812.1| flagellar hook-associated protein FlgK [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611171|emb|CAG74617.1| flagellar hook-associated protein 1 [Pectobacterium atrosepticum
           SCRI1043]
          Length = 568

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 143/409 (34%), Gaps = 14/409 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +    A    +++  NI N     Y R++ +   +             V V
Sbjct: 1   MSNLINTAMSGLKGAQIALSTVSNNISNQAVTGYSRQNAILEQAISSSTSAGYIGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +        L A  +      +   +E + ++ +       S +  I     +L+
Sbjct: 61  VSINRQYNEFITNQLRASQTTS--SSVSTYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N  +    +TV+  AE +V  F  + + ++ + +  + +I+  +  +  +  +++ 
Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSTVGQINTYTDQISS 178

Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I       S    +D LDQRD+L+ ++++++G+   V++     V   +GT L + 
Sbjct: 179 LNNEIMKLMGANSGTMPNDLLDQRDLLVDQLNKLVGVDVTVQDGIVYNVALKNGTNLVQA 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   +  +         V +   S +  G +  LL  R   +   + QL
Sbjct: 239 GTSNQLVAVNSSSDPSRLTIGYKDQTNDVVTLNESTLTGGSLGGLLSFRSETLDEARGQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +   V G       K +     +     +       +    
Sbjct: 299 GQLALAFADAFNAQHQQGYDRNGVKGGDFFSFGKAVVLNDSKNGGNAVLTPSYTDTKDVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
             +         W V  L+           +           G+   +T
Sbjct: 359 ATNYAIKYDGANWQVTRLSDNSKFTAAVTTAGTPPESSLSFDGVKMTIT 407



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/426 (11%), Positives = 128/426 (30%), Gaps = 15/426 (3%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114
            +  +  +  + +    I       S    + M     +    P   + +    ++    
Sbjct: 152 RDMDSGLNTQIQSTVGQINTYTDQISSLNNEIMKLMGANSGTMPNDLLDQRDLLVDQLNK 211

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
              +   +    V + A +   N   +    Q +  ++  +        +   +++  +N
Sbjct: 212 LVGVDVTVQDGIVYNVALKNGTNLVQAGTSNQLVAVNSSSDPSRLTIGYKDQTNDVVTLN 271

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           ++     +         +  D    ++ ++        N      Y  +G    +     
Sbjct: 272 ESTLTGGSLGGLLSFRSETLDEARGQLGQLALAFADAFNAQHQQGYDRNGVKGGDFFSFG 331

Query: 235 INFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 +S    +    P + D   V +   +    G    + ++ D+            
Sbjct: 332 KAVVLNDSKNGGNAVLTPSYTDTKDVQATNYAIKYDGANWQVTRLSDNS----------- 380

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 + +   P +  S +   + I       DN L + +++ I       S+P+ +  
Sbjct: 381 KFTAAVTTAGTPPESSLSFDGVKMTITGTPATNDNFLLKPVNDVIIDMAVAVSDPNKIAA 440

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV-AGINTNVTLLEYARNSIGWLE 412
             +   +    V ++ G P       ++  K  +       +    ++     + +G + 
Sbjct: 441 ASTKVDENGAPVLDVNGDPVFGGVSDNTNAKALLALQNEKIVGGKASVSGAYASLVGSIG 500

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S     +   Q V   ++    +  GVNL EE   L++ +Q Y  + ++I     + 
Sbjct: 501 NQASTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRFQQYYMANAQVIKTAQSIF 560

Query: 473 QTLLEG 478
             LL  
Sbjct: 561 DALLAA 566


>gi|296283218|ref|ZP_06861216.1| flagellar hook-associated protein FlgK [Citromicrobium
           bathyomarinum JL354]
          Length = 698

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 123/411 (29%), Gaps = 13/411 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----NVTVVTQ 55
           MSL  +   A +  + +     S+  NI N     Y R     +          V +   
Sbjct: 1   MSLSNILGTAVSGLSASQAGIRSVSNNIANISTPGYARERVSLSTGVTQGRINGVVIGEP 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                   ++ ++  +  +G+  +  ++    +         +     +  +  S  + +
Sbjct: 61  TRIADRFLEQTVYLRAGDMGRAEVTANYMDRLQAFLGAPGAESGVPARLDAISASAIALT 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              S        +   ++ + +      ++Q +R D + E+   I  +   L  +  +N 
Sbjct: 121 SGRSASQNASNFVAEVQDAIGSLRQLDDDIQVLRGDVESEVGYSIETVNDLLERIHGLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +         A    DQR   L+++S ++ IS   + +  + + +++G  L +   R +
Sbjct: 181 TVAQLRGLGRSAGGAEDQRMSALEELSGMMKISIREQPDGRVNIDSANGAVLLDGRLRKL 240

Query: 236 NFEKMNSYTVTSES--------NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
           ++                    N              S+   GK+  LL +RD  +P F 
Sbjct: 241 SYPSPGDGVAQPTYPVIDIRFTNEAGEPTTATGEKLDSSAIGGKLGGLLDLRDRALPEFS 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +Q+  +   L  + +              L          ++L      T  V  +    
Sbjct: 301 DQIGSLFGGLAETLNSVSNSGTAVPPPNRLDGRPTGLIGGDRLGFTGQATFAVTDKSGIL 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            +                  +A     +        ++     VA   +N 
Sbjct: 361 VASTTVDFDALGPLATVDDAIAAINGGLAGNATVALQDGRLSFVATSGSNG 411



 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/402 (12%), Positives = 114/402 (28%), Gaps = 15/402 (3%)

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
             +++        L ++L S S + +       +      ++                  
Sbjct: 297 PEFSDQIGSLFGGLAETLNSVSNSGTAVPPPNRLDGRPTGLIGGDRLGFTGQATFAVTDK 356

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             I +  + +           D            +  +  +D  L  ++        V  
Sbjct: 357 SGILVASTTVDFDALGPLATVDDAIAAINGGLAGNATVALQDGRLSFVATSGSNGVAVAQ 416

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
            +       +G + +  +   +  E          ++     G   S+        G+  
Sbjct: 417 GDPPSARAGNGFSHYFGLNDVVRSESATLVAPGFVASDPHGFGAGQSAQLVLRDATGRSL 476

Query: 274 ALLQIRDSVVPIFQN---QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           A   +  +V P   +   +L +      GSF+  D    +    PG   A      D+  
Sbjct: 477 ATTTLTGTVGPTMGDLVTELGQSPLAKFGSFALDDRGRISFTPTPGASGALLSIPTDSTD 536

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN------------VKNLAGYPDLINHY 378
             G   +         + S L   G  S                                
Sbjct: 537 RFGTGVSFTALSGLTGSASGLNKAGVRSDVLASADRLPLSRLRTDAAVGEPALGGGDTRV 596

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
             +  +        G   + T+  ++   +G      + + D+ + +    +       +
Sbjct: 597 AGALVEALGKPIDFGKAGSATIERFSSLLMGRAGTQAARAQDMLVDAAARRDDAINRRDS 656

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             GVNL EELS ++ ++ SY+ + +++    +M  TLL+ V+
Sbjct: 657 FSGVNLDEELSQMVVLQNSYSAAARVMTTATQMYDTLLDMVR 698


>gi|187918157|ref|YP_001883720.1| flagellar hook protein FlgE [Borrelia hermsii DAH]
 gi|119861005|gb|AAX16800.1| flagellar hook protein FlgE [Borrelia hermsii DAH]
          Length = 442

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/490 (9%), Positives = 120/490 (24%), Gaps = 62/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDGRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          +    +                  NNS          
Sbjct: 61  GVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N +  +  +  +  +    Q  NTSA     +    DKE       +      
Sbjct: 121 DSDRRLVNPANGMKIQGWMAKSIGGEQVINTSADVEDLVIPIGDKEGAKSTEYI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++++ +  + I+      N  +  +   T++ E
Sbjct: 175 ----------------TFACNLDKRLPIVEEGASEVDIARGTWVVNKTIYDSFGNTSVVE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++ T  + +  + ++G   S+       +G + +L      V  + +  
Sbjct: 219 LR------VVKDATTPNTWNATVLVNGEANSNFTMGFNNEGALLSLNGQAGQVGDLLEFP 272

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +           G +     +  D    +                 
Sbjct: 273 ITFDVVNANAGEVGEQQTVNLRLGNVGSYTDSITQFADASTTK----------------- 315

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +   Y +   ++     +A       L +    +  
Sbjct: 316 --AIVQDGYGMGYMENYEIDQNGVITGVYSNGIRRDIGKIALASFVNPGGLAKAGDTNFS 373

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
             E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 374 --ETSNSGQARIGETGFAGLGTIRAGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 431

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 432 QLLQELVRLK 441


>gi|322432968|ref|YP_004210217.1| flagellar hook-associated protein FlgK [Acidobacterium sp.
           MP5ACTX9]
 gi|321165195|gb|ADW70899.1| flagellar hook-associated protein FlgK [Acidobacterium sp.
           MP5ACTX9]
          Length = 457

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/488 (13%), Positives = 155/488 (31%), Gaps = 46/488 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
           SL++  N A         + +    NI NA    Y R                     V 
Sbjct: 3   SLMSTLNTASEALMAQEAEISVTNNNIANASTAGYTRETVSLQEAAPTSQGALSVGNGVE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V    S    +    +   +S  G      +     + +        S    +S    SL
Sbjct: 63  VAGITSVRNELLTSRIQQQTSEQGSSDAQVTALTQIQTLF--PSTGTSLASSLSGFFTSL 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            + S N ++    +TV+ +A+ +VQ FN+ +  +    +  +  ++ +++ +    SE  
Sbjct: 121 SALSSNPTDAANRQTVLSSAQTLVQQFNSVSAGLSGPASSLNTTVKTDVAQINELSSEAA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I  ++A+   +    DQ   +  +++ +  IS       D +   +    +    
Sbjct: 181 SLNQQITSQSATGQSSGTLTDQLGQVETQLASLTNISVTHGTGGDTITTGNGTPLVLAGQ 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
              +     +                   ++  SA+  G +   +QIRD+V+P  Q  LD
Sbjct: 241 SHALQTSTGSDGNTHIL--------DSSGTDITSAISSGDLGGTIQIRDTVLPGLQTSLD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A     +F+             G  +      +                         
Sbjct: 293 TLANQFATAFNSAQASGYTQNGTAGAALFSIPTTVAGS---------------------- 330

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               + +                 +        N +    + + +  ++   + N +  +
Sbjct: 331 ----AAAISLTTTDPTAIAASSDGSSGSSGNVANLVALQNSALPSGQSVTTGSANLVYQI 386

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S++        +  + ++   S+  GV++ EE + LI+ +Q+Y  + K++     +
Sbjct: 387 GNLTSNATTQQSSISLSLSSLTTQQSSVSGVSIDEESANLIRYQQAYEAAAKVVSTISTL 446

Query: 472 LQTLLEGV 479
             T +  +
Sbjct: 447 FDTTINMI 454


>gi|114569242|ref|YP_755922.1| flagellar hook-associated protein FlgK [Maricaulis maris MCS10]
 gi|114339704|gb|ABI64984.1| flagellar hook-associated protein FlgK [Maricaulis maris MCS10]
          Length = 713

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 130/413 (31%), Gaps = 7/413 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL  +   A +    +     +   N+ N +   Y R                V V   
Sbjct: 1   MSLSGILGNALSGLQASQAGLRASSNNVANVNTPGYARTIASVEARNVGGVAMGVQVNGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                           S     +   +     +    +   + S    ++     L   S
Sbjct: 61  VRIVDRHLQLTSLRSISDASVTQTNATALDRLQSQFGNLDDSGSIFARLNASFTGLSQAS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +  +   +   + +         + E++  R +AD +I   +      L EL  +N 
Sbjct: 121 VDPTLSVARLSAAADLDSFFTEAERLSGEIRTQRQEADSQINATLQRSNEILRELFDLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           +++   +S  D+    ++   LL ++S+ + +    + N  +V+ T+DG  L +  P ++
Sbjct: 181 SVQSVASSGGDSSGAENRVSELLDELSQHMDVRADFQGNGRVVLRTTDGVLLLDNYPANL 240

Query: 236 NFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            ++   S +   E   I+ +           S +  G ++AL+ +RD  +P    +L EM
Sbjct: 241 TYKVSGSGSYGVEYGKIYAESPNGGNPQELDSHITSGSLRALIDLRDHTLPDVAEELAEM 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 + +     +        L   +   +  +      + T+ V          +  
Sbjct: 301 TAGAADALNAAHNNSAAYPAPQTLTGRNTGLESTDSHNFTGATTLAVADSTGQLVRRIDV 360

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
               +   +     +A    + +               +  N  +++   + N
Sbjct: 361 DFDAATYSVDGGAAVAFAGTVGDLAAALNTALAGVGSASFANGVLSVSASSAN 413



 Score = 77.4 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/381 (10%), Positives = 104/381 (27%), Gaps = 2/381 (0%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           +        +      + +  ++ +  +D           +A        D    +   +
Sbjct: 333 STDSHNFTGATTLAVADSTGQLVRRIDVDFDAATYSVDGGAAVAFAGTVGDLAAALNTAL 392

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           + +        V++ +            D +   D   + +S   G++ +VR++      
Sbjct: 393 AGVGSASFANGVLSVSASSANNGVAFLQDEVSPSDRGGRGLSHFFGLNDLVRSDKPGFFE 452

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIR 279
                          +            +    I  V   S              + +  
Sbjct: 453 IGMSAAEPHNFTTGTSLSFRVDTVNGKTAGSYTIPMVTGGSVGDIITALNDTTSGVGRYV 512

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
              +               G          +       F       LD +  +     + 
Sbjct: 513 TFALDSDGQLDYTANPGYEGFELALTGDDTSRGTSGVSFSDLFGIGLDARASRAEGFAVD 572

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNV 398
              +  S+   L      +   + +    +G     +    + +    FD    +  +  
Sbjct: 573 TKIRADSSRLALGKLDIDAATVVGDYVLSSGDNRGGSALQAALSTPRAFDAAGSLATSTA 632

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           +L +Y     G +    + +      +  +    ++  ++  GV+L EEL+ +   +QSY
Sbjct: 633 SLGDYTARIAGTIGSRAARAESEAASAATLQATAAQKRADVEGVSLDEELAAMTLYQQSY 692

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
           N + +++    +M  TL+  V
Sbjct: 693 NAAARMLQAAKEMTDTLMGIV 713


>gi|220932517|ref|YP_002509425.1| flagellar hook protein FlgE, epsilon proteobacterial
           [Halothermothrix orenii H 168]
 gi|219993827|gb|ACL70430.1| flagellar hook protein FlgE, epsilon proteobacterial
           [Halothermothrix orenii H 168]
          Length = 519

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/522 (8%), Positives = 118/522 (22%), Gaps = 47/522 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49
           ++       +       +   I  NI N +   Y                          
Sbjct: 1   MMRSMYAGVSGLKAHQTRMDVIGNNIANVNTVGYKSSSVTFKEMLSQTLRGAKAPQGGRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +    +      +    +              ++   +      +L  
Sbjct: 61  GVNPMQVGLGVGVGSITVDHTQGNLQPTGVTTDLAIQGNGYFVVNNGQKNLFTRAGRLNL 120

Query: 110 SLESYSKNLSEDILGKTVI-----------------------DNAEEVVQNFNTSAREVQ 146
               Y  N+S   + +  +                                  T +  + 
Sbjct: 121 DDNGYLVNVSNGFVIQGWMADISTGTINSGQDPENIHITDEYSIMNARATGNATISGNLD 180

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
                  +     + +L    +        +   T +     D   +       ++ +  
Sbjct: 181 SQFGGTREITVDVLDSLGEMHTVTLSFTKRVPELTTTIGG-WDLNFRATEPDINLNNLTI 239

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY------TVTSESNPIFIDGVVVS 260
                 ++     Y S   T+      D +     +        +    N   +  V ++
Sbjct: 240 DFLADDDSQINASYNSGTNTVTVAADWDNSSTNAPADLEAIENAINDALNANGLASVDIT 299

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN--VPGLF 318
           +    A+        + + +     +   L ++    + +      I  N +     G  
Sbjct: 300 ATTTGAMTDFDGAGAITLSNPPSNTWDWNLVDVTDANLPASPASGTITFNPDGTINSGSN 359

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            +      +                  +     +      +        +     +   Y
Sbjct: 360 GSIAFDPTNGAATGQTINLDFSALTQLAEGFDFKINSDGYETGALEGFTIDDGGVITGSY 419

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +   +      +A       L++             S    +          IS     
Sbjct: 420 SNGLVRPIGQIAIAYFVNPSGLMKEGETLFSP--SENSGDPQIGEAGSGGRGKISVGNLE 477

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V+L E+ + +I  ++ +  ++K+I  TD+MLQ L+   +
Sbjct: 478 MSNVDLAEQFTDMITTQRGFQANSKIITTTDQMLQDLVNLKR 519


>gi|311105935|ref|YP_003978788.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8]
 gi|310760624|gb|ADP16073.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8]
          Length = 491

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/494 (10%), Positives = 122/494 (24%), Gaps = 24/494 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N A+Q    I  NI N+    +            +  V           ++
Sbjct: 2   GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKV--AAINQ 59

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +   G      + +  K M    D           +      ++  N     L  
Sbjct: 60  RFTVGTVNGGGGEYDIAIDGAKGMFRVTDQSGAVMYTRNGEFLVDKNNFIVNAQGYRLTG 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
               +              V          +    +N +      T  +           
Sbjct: 120 YPPGSVGANPVELQLPTANVAPKATSTGTTVANLDANAKVIYETNTTTDPGSAGTVTLNG 179

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A+ F       LQ     +       N  + VV T     +     + +          
Sbjct: 180 VAYTFTRSNVGALQWPVGGVPPDGTYINGANTVVITGGAGAVTSGDIKTMAGYDEYVAPT 239

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKA----LLQIRDSVVPIFQNQLDEMARVLIGSF 301
                P         +N         +      +                ++   + G  
Sbjct: 240 IEVGKPFDPKLSSTYTNASPMTVFDSLGNSHQVMQYFVKRPAATADTSTYDVYYTIDGQA 299

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 A      P  F  +    + +     +S          ++P  +    + + +F
Sbjct: 300 MAPTTEAAGVWGNPQKFTFNKAGVMTSAPVVNLSFATPGGGTTPADPINIAMNYAGTTQF 359

Query: 362 LWN----------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                N++G   ++  Y +   +      +A  +    L     
Sbjct: 360 GSAYKLVAKPDGYASGEFSGINISGDGSIVASYTNGETQIVGTIVLADFSNLQGLQPVGN 419

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   W E + S    L        + +    + +  V++ +EL  +I  +++Y  +++ I
Sbjct: 420 N--AWTETSASGQPILGQPGSNGLSKVVGQATESSNVDMSKELVNMIIAQRTYQANSQTI 477

Query: 466 MFTDKMLQTLLEGV 479
              D+++Q L+   
Sbjct: 478 KTQDEIMQVLMNLK 491


>gi|326319103|ref|YP_004236775.1| flagellar hook-associated protein FlgK [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375939|gb|ADX48208.1| flagellar hook-associated protein FlgK [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 643

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/453 (11%), Positives = 135/453 (29%), Gaps = 19/453 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N +   Y R+                  + V V T
Sbjct: 2   SLLNVGARALLANQVALQTAGHNIANVNTAGYSRQTLSLQTVQGQFTGGGYIGQGVDVQT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
               +  +  +   A  S     +      +  + +       +     I+ + +S +  
Sbjct: 62  ILRNHDELLTRQAAAADSVQSADKTRAERLSQLQDVFG--GGTSGLGAAITDMLNSFKDV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             +  +       I   +E      ++A  V +I+    +++  +++ L     ++  VN
Sbjct: 120 VASPMDMTARTVSITRMDETAARMRSAAGRVDEIQYTVKEQLNGDVNALNALAKQMASVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           + I     +    +D LDQRD ++++I++ +  + +  ++  + ++ +    L       
Sbjct: 180 EQIARVKGNGQTPNDLLDQRDQIIRQINQYVQTTQVAADDGTVGLFVAGSQPLVLGTTAT 239

Query: 235 INFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               + +S    S    ++    G          +  G++  LL+  ++ +   +N L  
Sbjct: 240 PLQVQESSMFPGSGQLKVYFSPPGTKPIELDDGMLGGGELSGLLRFHNNDLAEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPS 349
           MA+ +  + + +  +    +   G  +      +           +  +       S+  
Sbjct: 300 MAQAIGMTMNAQHKLGLTLDGQAGKDLFTVPASMPGYTSGTAVGNVSFSDATKFAASDYE 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                    +    +      + DL N      +        AG      +     ++  
Sbjct: 360 VRFTTPPAGQVVRLSDGKATAFTDLANLAGQQIDGLTFNMTTAGAAGERVMFRPFSSAAR 419

Query: 410 WLEKNRSDSHDLHMKS--QVVFNHISESYSNTV 440
            +E       DL   S         +       
Sbjct: 420 DIEAKVLSPRDLAAASPVNAAMGTANNGSLQLS 452



 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/441 (11%), Positives = 108/441 (24%), Gaps = 14/441 (3%)

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R  N+ +    + A    +G          L    +      +S      +L+    
Sbjct: 201 QIIRQINQYVQTTQVAADDGTVGLFVAGSQPLVLGTTATPLQVQESSMFPGSGQLKVYFS 260

Query: 113 SYSKNL---SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                     + +LG   +        N     R +    A A          L   L  
Sbjct: 261 PPGTKPIELDDGMLGGGELSGLLRFHNNDLAEGRNLLGRMAQAIGMTMNAQHKLGLTLDG 320

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLF 228
               +      +   + +   +                           VV  SDG    
Sbjct: 321 QAGKDLFTVPASMPGYTSGTAVGNVSFSDATKFAASDYEVRFTTPPAGQVVRLSDGKATA 380

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---------KGKIKALLQIR 279
            T   ++  ++++  T    +     + V+      +A                + +   
Sbjct: 381 FTDLANLAGQQIDGLTFNMTTAGAAGERVMFRPFSSAARDIEAKVLSPRDLAAASPVNAA 440

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
                    QL  +            P         G     G+    +           
Sbjct: 441 MGTANNGSLQLSSIKATASPYTPPPTPGGVTLTFTAGPPATYGVTGSTSPASGTTGLAYT 500

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNV 398
                  +   +   G+        V N         +  ++ N           +  + 
Sbjct: 501 PGQPITIDGWEITLKGTPGTGDTVKVGNALDAQYGDAYKRNAGNASAIDALGDVKMFDDA 560

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           T+ +     +  +     ++      S  +  ++    S   GVNL EE + LI+ +Q+Y
Sbjct: 561 TMSDGYAGLMAQVGTRMQNAKYASDVSSTISTNLERDRSAVAGVNLDEEAAKLIQYQQAY 620

Query: 459 NISNKLIMFTDKMLQTLLEGV 479
             S K++     +   L++ +
Sbjct: 621 QASAKVLQIAQSIFDNLIQTM 641


>gi|253996313|ref|YP_003048377.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8]
 gi|253982992|gb|ACT47850.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8]
          Length = 657

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 139/417 (33%), Gaps = 17/417 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
             + N  ++    A    ++   NI NA    Y R+  +               +   + 
Sbjct: 3   SNILNIGKSALAAAQVGISTTGHNIANASTPGYSRQVVVQAAAQSQNFGYGFVGQGTEIA 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +      ++         S             +  +     +        +S    +++ 
Sbjct: 63  SVTRIFNDILAAQAVRSQSNSSSAN--TYLSQMTSINDMLSNSTAGLNPAMSDFFGAVQK 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S N S+    ++++  A+ +   F T+   + +IR   + ++   +  +  +  ++  +
Sbjct: 121 LSANPSDIPTRQSMLSYAQSLASRFQTTNNRLNEIRDSVNTQLTSSVGLVNTYAKQIASL 180

Query: 174 NDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ND I K  +A+    +D +DQRD L+ ++S+ I  + + +      VY  +G  L     
Sbjct: 181 NDVIEKSISANGSTPNDLMDQRDQLVLELSKQIKTTVVSQGQGGYNVYVGNGLPLVVGKE 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +    +                  +++P G I  LLQ R   +   QNQ+ +
Sbjct: 241 TFNLLTTPSPTDPSRLEVAYQSSSKTTVLGA-NSLPGGVIGGLLQFRAESLDAVQNQIGQ 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A VL  +F+ +     + +   G  + +  + + N        T        ++P+ + 
Sbjct: 300 IAVVLGNTFNSQLMQGYDLDGTLGSALFNIAEPVVNSSALNSGPTTTPA---NASPAEVA 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +K    +   L       +    S N    F  +      +T+ +     + 
Sbjct: 357 AKIVDAKALTTSDYKLLFDGTNYSVTRLSDNTTQNFSSLPANIDGLTISQTTGTMLA 413



 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/439 (9%), Positives = 104/439 (23%), Gaps = 2/439 (0%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK-EMMSADDHYNNS 99
                   NV V              L    S     RL  ++++     +   +     
Sbjct: 218 VSQGQGGYNVYVGNGLPLVVGKETFNLLTTPSPTDPSRLEVAYQSSSKTTVLGANSLPGG 277

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               + + R       +N    I          +++Q +      +     +  + +   
Sbjct: 278 VIGGLLQFRAESLDAVQNQIGQIAVVLGNTFNSQLMQGY-DLDGTLGSALFNIAEPVVNS 336

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +      +     + A          A    D + +       +  +S     N   + 
Sbjct: 337 SALNSGPTTTPANASPAEVAAKIVDAKALTTSDYKLLFDGTNYSVTRLSDNTTQNFSSLP 396

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
              DG T+ +T    +  +        + +    +                    +    
Sbjct: 397 ANIDGLTISQTTGTMLAGDSFLIKPTQNAATKFTLAITDARKLAIGGSILSSSANVANTG 456

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            + +          +  +   F+        +     +         +       +    
Sbjct: 457 TASISSPAADSTYASSPIASPFNITYNAGAPNTLTGFIATEPVTVTSNGTSVTYAAGAPV 516

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 +  +              +   +            +            I  N +
Sbjct: 517 TFVNGATISTAGMSFTISGTPNNGDQFTVTPNSVTGPGDNTNGLLLAKLQNADTITGNKS 576

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
             +     +  +     +   L +    V   I+ S     GVNL EE + LI+ +Q+Y 
Sbjct: 577 YSDAFGQMVNGVGNKTRELGILSVSEGQVLEQINASVQAESGVNLDEEATNLIRYQQAYQ 636

Query: 460 ISNKLIMFTDKMLQTLLEG 478
            + K++    ++   LL+ 
Sbjct: 637 AAGKMMQIASQLFDVLLQL 655


>gi|152965624|ref|YP_001361408.1| hypothetical protein Krad_1658 [Kineococcus radiotolerans SRS30216]
 gi|151360141|gb|ABS03144.1| protein of unknown function DUF1078 domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 462

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/491 (8%), Positives = 111/491 (22%), Gaps = 42/491 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   +       +  NI N +   +     +   +   +T       +   
Sbjct: 1   MLRSMFSGVSGLRSHQTMMDVVGNNIANVNTAGFKSSSVVFADTLSQLTKAAGAPTDAAA 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                             +    +              + M A    + +          
Sbjct: 61  GTNPAQVGLGVRVNAITQNMTQGSAQATGKSTDLMLQGDGMFAIQQGDGTFYSRNGSFTL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                        +     D A  V                + + +I   +      +  
Sbjct: 121 DANGSVVTNDGGYVMGWKADAAGAV----------------NTNGQIGKLVIPSDTVMPA 164

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +       K            L   D  +   S   G+       +    Y   G     
Sbjct: 165 VATTEAKFKGNIDRTFKTPTALPAADQYVTGSSPGDGVIKGTAVTSSFSSYDDQGIATKV 224

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            V    +     +   ++++N +            +      + +            +  
Sbjct: 225 FVTFTNDVNYTAATAASTDANGVVTPAKAAVYEPTNVWHVKAVDS----------NGKEV 274

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           + + A        E DP          +   +G     +         +          S
Sbjct: 275 VLKKADGTTAETVEFDPDGAAKGTNSMVATVEGAGTKADSTVSLDLTGLTSYVGTTG-TS 333

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +      +        +      +  +Y + + +      +A  N +  L +   +   
Sbjct: 334 NVNPVADGAPIGTLTGFSFGTDGVITGNYSNGYKQTLGQIAIASFNNSAGLRKEGNSLYS 393

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S      +        I         V+L  E + LI  ++ +  ++K+I  +D
Sbjct: 394 V--STNSGQPVFGIAGSAGRGSILAGSLEMSNVDLSAEFTNLILAQRGFQANSKVITSSD 451

Query: 470 KMLQTLLEGVK 480
           ++LQ L+   +
Sbjct: 452 ELLQDLVNLKR 462


>gi|303325592|ref|ZP_07356035.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. 3_1_syn3]
 gi|302863508|gb|EFL86439.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. 3_1_syn3]
          Length = 710

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/414 (11%), Positives = 121/414 (29%), Gaps = 17/414 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           L  + N  Q+  N +    +    N+ NAD + Y R+      +             V  
Sbjct: 2   LYGLLNIGQSALNASQAWISVTGNNLANADTEGYSRQYVDQRDAGGLTAKPGAQGLGVNA 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   +  ++     ++   +     +     E +  ++      +  ++K   + +
Sbjct: 62  QQIMRFFDSFLERSYVRQATNSARWDEQDTIMTSLENIF-NESNRAGLSSSLNKFFTAWQ 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +    +    ++++  A+ +   F ++   ++ I+ + D  I   +  +      +  
Sbjct: 121 DLALRPEDAATRESLLSYADNLSDMFGSTMDGIKAIQKEMDVSIGQTVDRVNDISKAIAD 180

Query: 173 VNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I   T     + +  LD+RD L+++++ +  + TI     +  V  S+G  L +  
Sbjct: 181 LNRQITSNTVDGVSNPNSLLDKRDQLVRELASLADVETIDNGKGNFRVQLSNGQPLVDGQ 240

Query: 232 PRDINFEKMNSYTVTSESN-----PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
                             N      +  DG          V  G    +       +   
Sbjct: 241 NSYELKIMGPQAENRLSVNSPYKGSVQFDGADSHEYTVEIVNGGNAGDVPPQFRVSLDGG 300

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +  L +     +          G ++ V    +       DN       + +  +  Y  
Sbjct: 301 KTWLRDDDGKELHYDITDSDGDGTTDQVLVKNLKISFSAADNFHAGDKFDIMPKDGLYWI 360

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
            P+   +  +    F             +  Y +  + N             +L
Sbjct: 361 EPTRGPENITPQIGFDGTDNLSRLTGGKLAAYYNIRDDNCGRYMDELNAVASSL 414



 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 97/303 (32%), Gaps = 6/303 (1%)

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT------LFETVPRDINF 237
              A   + + + +  + S +  +           +  + G+         +    ++NF
Sbjct: 408 NAVASSLIWEVNRIHSQGSGLSMLDYAQGQQRVEDITKALGSAQAILPFSDKLQAGNVNF 467

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +  T    S+ +          Q     K  ++ +    +++V    N +       
Sbjct: 468 HFYDKTTGEYNSSGMLDFDPATPGIQNFDPDKHSLEDVRDAINNMVDADGNPIAPPPLNA 527

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                +       + +V     AD    +              +    ++          
Sbjct: 528 SIQDGKLIIETNPAADVTFGMGADSTGLMAALGINTFFSGDSADNLAVNSQVHSNANLIA 587

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S +     +  AG            +K      +     N ++ EY  N +  +  +R  
Sbjct: 588 SGQVNGQHQANAGDNVTATAIGKLADKKITISTLWKTVDNQSISEYYANLVTTVGSDRRL 647

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S         + N ++E  ++  GVN+ EE+S LIK + SY  + KLI   D+MLQTLL 
Sbjct: 648 SKTNSEYHSALTNDLAERTASVSGVNMDEEMSNLIKFQHSYTAAAKLITTADQMLQTLLG 707

Query: 478 GVK 480
             +
Sbjct: 708 LKQ 710


>gi|94312675|ref|YP_585884.1| flagellar hook-filament junction protein [Cupriavidus metallidurans
           CH34]
 gi|93356527|gb|ABF10615.1| flagellar hook-filament junction protein [Cupriavidus metallidurans
           CH34]
          Length = 631

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/466 (12%), Positives = 150/466 (32%), Gaps = 31/466 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
           ++FN   +  N A     +   N  NA    Y R+ T+   +              + VT
Sbjct: 2   SLFNIGLSGLNVAQNALTTTGHNFSNAATPGYTRQSTIIASAGGQFTGSGFFGQGSSTVT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +          L   +SA  +     S  +  + + AD   N      + K   ++++ 
Sbjct: 62  VQRVYDGFLTGQLRTATSASSELSTFSSQISQIDNLLADQ--NAGLAPLMQKFFAAVQTV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S    +    + ++  A+ +      S+   ++++   + ++   +  +  +  ++  +N
Sbjct: 120 SDTPGDTAARQGMLSAAQALTGQVKASSDYFKQLQDGINTQLTSSVRQVNDYTKQIASLN 179

Query: 175 DAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             I   TA+      +D LDQRD  + ++++++G   +V++ N   V+  +G  L     
Sbjct: 180 KQISQLTAASGGQPPNDLLDQRDQAVSELTKLVGAKVVVQDGNTYNVFVGNGQPLVMGSE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   ++   +  +    +       ++  +V  G I  LL+ R   +   QN +  
Sbjct: 240 SYDMTAVPSAADPSRITIGYTLPNGNTVQSEDGSVTGGSIGGLLRFRSQSLDQAQNAIGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------ 346
           ++  +   F+ +  +  +     G  +    +          S  +       +      
Sbjct: 300 LSLAIGQVFNNQHKLGIDLNGATGTDLFSLGQPTTYANANNKSNAVATATITNAGSLTTS 359

Query: 347 -----------NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                      + + L D   V+     +  +  G    +N    + +   I        
Sbjct: 360 DYSLKFDGTNYSLTRLSDNTVVATSTSLSGISADGISVSLNGPMSANDSFLIQPTRNAAA 419

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
              TL+                S           + +++ ++   G
Sbjct: 420 GFGTLITDPAKVAAASPARADASTQNTGSGTAKLSGVAQGFTQLSG 465



 Score = 91.2 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 105/373 (28%), Gaps = 7/373 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y+      +  +        +       ++ + + +    +                  
Sbjct: 258 GYTLPNGNTVQSEDGSVTGGSIGGLLRFRSQSLDQAQNAIGRLSLAIGQVFNNQHKLGID 317

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N A      S      + +  +      +  I  +  +  ++  + +     +L     
Sbjct: 318 LNGATGTDLFSLGQPTTYANANNKSNAVATATITNAGSLTTSDYSLKFDGTNYSLTRLSD 377

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-SAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +     +   ++++   + ++G + +++       +        +      +      
Sbjct: 378 NTVVATSTSLSGISADGISVSLNGPMSANDSFLIQPTRNAAAGFGTLITDPAKVAAASPA 437

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   + S    ++G ++    L      K          +    V P   +     
Sbjct: 438 RADASTQNTGSGTAKLSGVAQGFTQLSGKITAKYTGAGYTFTDALGNVVTPTSTAASGTG 497

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA------GINTNVTLLEYAR 405
            D       F ++    AG    ++    +   N     +A       IN   +  +   
Sbjct: 498 TDYTFSGLTFHFDGTPKAGDTFTLSSNSGATADNGNALALAKLQTAKTINGTSSFNDAYA 557

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +  +   +         +   ++ +  +  GVN+ EE   L+K +Q Y  + K+I
Sbjct: 558 SLVNQVGSDAKSASIASESQDSITTQVTSAQQSVSGVNMDEETVNLLKFQQLYQANAKVI 617

Query: 466 MFTDKMLQTLLEG 478
                ++ TLL  
Sbjct: 618 QTASTIIDTLLSI 630


>gi|332187897|ref|ZP_08389630.1| flagellar hook-associated protein FlgK [Sphingomonas sp. S17]
 gi|332012058|gb|EGI54130.1| flagellar hook-associated protein FlgK [Sphingomonas sp. S17]
          Length = 447

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/489 (10%), Positives = 127/489 (25%), Gaps = 56/489 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49
           +  + +   +          ++  NI N     Y RR                   +   
Sbjct: 1   MSDLLSIGASGVRAYQTALTAVGENIANVGTDGYSRRTVTMREVVPAAGLAANKVSAGSG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V              + A ++ + +     ++    E         +     ++    
Sbjct: 61  VAVAGIARATDVYASAAVRAATADLSRTTTGATWLTRIESAM----TGDQVQTRLTAFFT 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +  + +   +   L  T+++ A+     F  +     +I AD D +      +L    + 
Sbjct: 117 AARTLAAEPTSAALRSTMLETAKSTATAFTATDSAFDQINADFDGQARQAAHDLSSLATS 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L  VND +         +    DQRD +L ++S +  I++         V   D      
Sbjct: 177 LVRVNDGLGRTQPGTAASAQLTDQRDQILAQMSALSDITSTTDELGRATVRLGDRVGPVL 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +           S    + + G             G +    +     +   +  
Sbjct: 237 ASTDMVGSVSYQRRADGSVGFTVSLQGESQDFIPTGGALAGALDGAER-----INTTRAA 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            +++A+  + + +       +     G  +                             +
Sbjct: 292 FNQVAKDFVDTVNGLQANGQDLNGDQGTPMF---------------------TLTAGTAA 330

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                   SK         +   D +     +                          + 
Sbjct: 331 MTLAMTDGSKIAAATGGQGSRNADNLYALQTAR-------------GTGQFEGRLTQIVT 377

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                      +      + +    + S   GV L  E   L++ +Q+Y+ S+++I    
Sbjct: 378 DNATALKQRQTVAEAQTAISDGAKATLSGASGVTLDSEAVTLMRFQQAYSASSRVIQMAR 437

Query: 470 KMLQTLLEG 478
           +  Q++LE 
Sbjct: 438 ETFQSILEI 446


>gi|254524155|ref|ZP_05136210.1| flagellar hook-associated protein FlgK [Stenotrophomonas sp. SKA14]
 gi|219721746|gb|EED40271.1| flagellar hook-associated protein FlgK [Stenotrophomonas sp. SKA14]
          Length = 626

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 131/449 (29%), Gaps = 16/449 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + +V +          +  A+   N+ N +   Y R+      +               +
Sbjct: 1   MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNFATADPQNYGYGTIGNGTRI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R     +    L   S  + + + L         + ++     +     S   DS+ 
Sbjct: 61  TDIRRTADQLAISRLLDSSGELARLKQLSGMADRVNSLFSE--GATNIAGVWSNFFDSVS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S N S     + ++D  + +   F      +  +  + +  +    + + R   E+  
Sbjct: 119 GLSSNASGTADRQNMLDGGKALANRFVQLNTHLNNLNGEVNNGLLAGATEVNRLAQEIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N AI   T   + A D LD+RD L+ ++    G + ++++   M VYT+ G  L     
Sbjct: 179 INGAI--GTNIANAAPDLLDRRDQLITQLIGYTGGTAVIQDGGIMNVYTAGGNALVVGTT 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + Y        +   G  +     +    G+I  LL+ RD+V+   Q +L +
Sbjct: 237 ATKVTTVADPYQPERLQLALETQGNTIR--LDAKAVGGQIGGLLEFRDTVLTPAQAELGK 294

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  +F++      +     G    +                              +
Sbjct: 295 LAVGLAETFNQTHHQGVDMYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQ 354

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +         W         ++      +     + + V  +                  
Sbjct: 355 NVVLQFDGTQWKASRADTGANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAG 414

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVG 441
              S    +   S++      +  + T  
Sbjct: 415 VAGSMEVAITDPSRIAAAAAVKGAAATSN 443



 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/373 (8%), Positives = 95/373 (25%), Gaps = 5/373 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +     + +         ++          +   +A+  K          +   +   
Sbjct: 253 QLALETQGNTIRLDAKAVGGQIGGLLEFRDTVLTPAQAELGKLAVGLAETFNQTHHQGVD 312

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +   +     +  +     +  +     +S     +  +   N  +    +         
Sbjct: 313 MYGQLGGDFFNIGNPRVTANNANTGTASLSATYGDLGKLDAQNVVLQFDGTQWKASRADT 372

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++      +       N + +      +     + +        +  ++    +    
Sbjct: 373 GANVPLTGTGTAADPLVINGVKLVVGGTPAANDRFLLQPTAGVAGSMEVAITDPSRIAAA 432

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +    + +                                       PQ  +    +
Sbjct: 433 AAVKGAAATSNTGTGKLSGVTVSDSTNANLRNPAAIVFTSATTYTIDGGPPQTYTPGQTI 492

Query: 352 RDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              G          + +  N+   P   +   ++     +    A  +  VTL       
Sbjct: 493 SANGWSFVLDGAPKVGDTFNITPTPAGSSDNSNASRLAKVESAKAFNSGTVTLNGALGGL 552

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      +        V+ +   E+     GVNL EE + +++++Q+Y  +++LI  
Sbjct: 553 TTQVGAAARSAEYSLEAQLVINDKAQEARDEVSGVNLDEEAADMLRLQQAYQAASQLIST 612

Query: 468 TDKMLQTLLEGVK 480
            D M QT+L  V+
Sbjct: 613 ADSMFQTILGAVR 625


>gi|126175146|ref|YP_001051295.1| flagellar hook protein FlgE [Shewanella baltica OS155]
 gi|125998351|gb|ABN62426.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155]
          Length = 460

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/483 (10%), Positives = 117/483 (24%), Gaps = 35/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNAKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDMAIKGGGFFVTSSELGTLDHA----FTRAGAFKVDSNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             ++      ++   ++ 
Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVKTENVTLQMNLDAKAAALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D         + I   +  ++ M  Y        +      
Sbjct: 178 -------------ALFDPADPKTYNNVTSMTIYDSLGQSHIMTTY------FVKPKDGAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N E         ++ P+ ++G     +  +          +     V             
Sbjct: 219 NGENNWVAYYAVDNKPVNLNGPAGKYDVDTNGDGSPDVPTVAGGGGVSAQTAGGWTGSVL 278

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +  D         P      G+        Q ++       QY    +      
Sbjct: 279 KFNSVGAYIDSNPAVIATQPLGNTGAGVLGPGADGTQSVTVKFNAPTQYADPFAATELTQ 338

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 339 DGTTVGRLTNVEIGADGLITASYSNGSTVALARVALVRFANEQGLTQVGN--TSWKASLA 396

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  IS S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 397 SGPALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 456

Query: 476 LEG 478
           L+ 
Sbjct: 457 LQI 459


>gi|255021361|ref|ZP_05293409.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969224|gb|EET26738.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus
           ATCC 51756]
          Length = 684

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/446 (12%), Positives = 132/446 (29%), Gaps = 17/446 (3%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS +  + + A +    A         NI N +   Y +   + +               
Sbjct: 1   MSGVSGILSSALSGLQVAQDALQVTGNNIANVNTPGYSQESVVQSSLPTTFLGGQYYGNG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             V + +    +     + + ++    Q  L +                +    I++   
Sbjct: 61  AQVSSVQRAYSSFLQSQVWSATAQASGQSTLSTSLQ----GLLGTLSGGAIASSINQFFS 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                + +       + ++ NA+ + Q FN+ A+++  I    +++I   +  +    + 
Sbjct: 117 GAAQVAASPESVPARQALLSNAQSLSQTFNSLAQQLDFINTGVNQQISQSVQEINTLSNG 176

Query: 170 LTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +  +N  I       + + +  LDQRD L+ +++  +G+  + ++   + VY S+G  L 
Sbjct: 177 IAQLNSQIASLQGQGNGNPNSLLDQRDQLITELNAQVGVQVLPQSGGQVNVYLSNGQVLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                     + N Y   S +           ++  + +  G +  LLQ R   +   QN
Sbjct: 237 ADSKAFSLQTQPNPYDGQSLNVGYLGPNGGPGADISTGLSGGVLGGLLQFRSQSLIPAQN 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  +A  L  S + +     +    PG  +                             
Sbjct: 297 GLGLLADGLAASVNAQQAQGLDLNGNPGAPLFQLGGVQIFAHQGNTGSASVSGQIRDVAA 356

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
               +     +              +++ Y  S         V        L  +A   +
Sbjct: 357 LTADNYIVSYQGSGQWSVQDQSTGQILSSYSGSGTPPSGTFSVQSSGGAQVLS-FAGVQV 415

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434
                  +    L   + +    +  
Sbjct: 416 SVSGNPGNGDRFLVEPTHLGAVSLQT 441



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/439 (9%), Positives = 101/439 (23%), Gaps = 23/439 (5%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              +       +            + L    + +G      +     +     D   N  
Sbjct: 269 ADISTGLSGGVLG----GLLQFRSQSLIPAQNGLGLLADGLAASVNAQQAQGLDLNGNPG 324

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                     + ++  N     +   + D A     N+  S +   +         ++  
Sbjct: 325 APLFQLGGVQIFAHQGNTGSASVSGQIRDVAALTADNYIVSYQGSGQWSVQDQSTGQILS 384

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           S            +            A   +            ++  + +   +   V+ 
Sbjct: 385 SYSGSGTPPSGTFSVQSSGGAQVLSFAGVQVSVSGNPGNGDRFLVEPTHLGAVSLQTVLS 444

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                                +    +  N     G  VS+    +     + +      
Sbjct: 445 NPAQIAAASPYVSSPGELVNGALQNANLGNLTLSSGSYVSTAPSGSTVVSGLASFPTPLQ 504

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +    +    ++ V+         +        G   +                 +  
Sbjct: 505 ITLSSGGSSGSSVSYVVSSGSGTSSGVIATGSVTLGGSGSFIDIAYPGTPGGYWQVNLSG 564

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +     +   L  GG  S      +  L     L                    N   T 
Sbjct: 565 SMAASGDAFTLSPGGPGSNGNAAALAALGTDSIL-------------------GNGQSTF 605

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +     +  +      +         + +    +  +  GVNL +E + LI+ +Q+Y  
Sbjct: 606 NDQTAQLLTQVTTQAQQAQSNAQAQGNLLSQAQAAQQSVSGVNLDQEAANLIQYQQAYQA 665

Query: 461 SNKLIMFTDKMLQTLLEGV 479
           + K I   + + Q+LL+ +
Sbjct: 666 AAKAISVGNSLFQSLLQAL 684


>gi|77460469|ref|YP_349976.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf0-1]
 gi|77384472|gb|ABA75985.1| putative flagellar hook protein [Pseudomonas fluorescens Pf0-1]
          Length = 443

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/473 (11%), Positives = 119/473 (25%), Gaps = 32/473 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN   +    A++Q      NI N     +            +  + +           
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVATAGFKSSRAEFEDVYSSTRLGSGSKVI------ 55

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                               + +  +  D  N      +        + S N S      
Sbjct: 56  ------------GNGVRLANVSQQFTQGDINNTGNVLDMGINGSGFFTMSNNGSISYTRA 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              +Q    D++ +I      +   L++L +    +  K+ S  
Sbjct: 104 GTFKVDNNGFITNTDYTSRLQGYGVDSNGKI------INGVLTDLKIDTSNLAPKSTSSV 157

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            +   L+  +  + + +           +          T +++T       ++    T 
Sbjct: 158 TSTINLNSSEKPIDQTAFP------FDPSKLESYTKQFSTPIYDTQGNSHVMDQYMVKTS 211

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +      +         GS        A     DS   + Q            +     
Sbjct: 212 DNTWKVYTLVDGRNPDATGSNPVTTPPVASTLTFDSSGKLLQVSTPSTLPAPAPNPIISS 271

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +         +       +       G++ ++    QY ++ +                
Sbjct: 272 DLKLTGWVPGTVTNGVFTPNGAAANPAGVTISLAKTTQYNADTARSIPTQDGYATGQITN 331

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             + G   L  ++ ++ +K      +A       L        GW E   S         
Sbjct: 332 LTIDGTGTLFANFSNNQSKAIGQVALASFTNEQGLQPIGG--TGWKETFASGVPGYDAPK 389

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  +      VNL  EL  LIK + +Y  + K I     ++QT+++ 
Sbjct: 390 TGTLGEVVSNSLEESNVNLTNELVDLIKGQSNYQANAKTISTQSTIMQTIIQM 442


>gi|319781665|ref|YP_004141141.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167553|gb|ADV11091.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 419

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/481 (9%), Positives = 107/481 (22%), Gaps = 63/481 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI N+D   Y R     +      T     S   
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANSDTTGYKRSSAEFSTLVMPSTGGAYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    +     +       +      D                 +    N +
Sbjct: 61  TTTIRQAVSDPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDGQGRLVNSA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     +N           A  V          I  +              N     
Sbjct: 121 GFQLMAYSYENGVP--------AATVNGFEGLVPVVISDQGMTATPSTEGSFAGNLPAGA 172

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +  +             K S                         ++ +      + 
Sbjct: 173 TPVATANLPAANAATAQYTSKSS----------------------MVAYDNLGNKKLLDV 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T          D    ++        G +                           
Sbjct: 211 YFTNTGAGTWQVAVFDQSKATAGTSFPYTAGGLLG------------------------S 246

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +    D   G     P                  ++  +    Q  +  +      + + 
Sbjct: 247 ANLTFDTTTGKLTGTPTNVSFTVPNGAT------LNLDLSALTQLGTGFTVSDAQVNGNA 300

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +   ++    +   Y D   K     P+A + +   L     N         S + 
Sbjct: 301 PSTIDKVQISKDGTIYAQYKDGSTKPLYKIPLADVQSPDQLKALPGNVYSQ--GTESGAV 358

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +   ++     I         V++ EEL+ +I  ++SY  ++K+      ++  L+   
Sbjct: 359 RVGFANEGKLGSIISGALENSNVDIAEELTNMIAAQRSYTANSKVFQTGSDLMDVLVNLK 418

Query: 480 K 480
           +
Sbjct: 419 R 419


>gi|239995125|ref|ZP_04715649.1| flagellar hook protein FlgE [Alteromonas macleodii ATCC 27126]
          Length = 461

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 126/483 (26%), Gaps = 34/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +       NI N +   +                          V  
Sbjct: 2   SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAASLLSGGKTKVGDGVLT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L   ++++        F A    +++ D           + +   +++ 
Sbjct: 62  QEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFS----FTRAGQFKLDSDNFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + D L    +++         ++   V+   +        E+       +    ++ 
Sbjct: 118 VNSNGDNLLGFPVNSDGTSASVALSTTEPVRIPDSSGSPAQTTEVDIRMNLPAGDAALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D L    +  + +   + +++ M  Y     T        +
Sbjct: 178 QD-------------FDPEDPLTYNAATSVTVYDSLGDSHVMTYYFIKDATPGVDNEWYV 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                ++    ++S      G             G     +     +     +       
Sbjct: 225 ATAIDDTLVDMTDSA-----GNDTDPATAVNSVGGNTGNAVTASKLIFSQGGDFAGMETP 279

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             + +   K         +         +   +      + T     Q+ S         
Sbjct: 280 DGLPTLDFKMQTEALGAGILANGSDPTQQISIDFNLDVNNATPNEPTQFASAFEVTSLEQ 339

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     +   + +  ++  +   +   +    L +   +S  W E   
Sbjct: 340 DGLPVGRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFSNEQGLTQ--ESSTQWKESIL 397

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I+ S      VNL  EL  +I  ++++  +++ +   + + QT+
Sbjct: 398 SGEALAGEATTGTFGEINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNNSLNQTI 457

Query: 476 LEG 478
           L  
Sbjct: 458 LNI 460


>gi|254440385|ref|ZP_05053879.1| conserved domain protein [Octadecabacter antarcticus 307]
 gi|198255831|gb|EDY80145.1| conserved domain protein [Octadecabacter antarcticus 307]
          Length = 432

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/490 (12%), Positives = 135/490 (27%), Gaps = 68/490 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55
           M++ + FN +     + + + A+I  NI N+    Y R                 T    
Sbjct: 1   MTISSSFNASVAGLASNASRLATISDNIANSSTYGYKRVVADFHSMVVDGGKGKYTAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI---SKLRDS 110
               + + D+   L A S+A       +    + E  S      +  +  +      R  
Sbjct: 61  GVTTQRLIDERGPLVATSNATDLAVRGRGMLPVTERSSVSVGSESDFSLRLATTGSFRTD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            E Y    +  +L     +    +      +   ++ IR D ++ I    +N+       
Sbjct: 121 AEGYLTTTNGLLLLGWPSNADGSLPNLPRDTIGGLEPIRIDTNQFISDPTTNV----ELA 176

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +        AS       ++  D                               L   
Sbjct: 177 VNLPATATEAGASGDTEELLVEYIDN------------------------------LGIA 206

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               ++F      T  +    +F++              G I     I    +     +L
Sbjct: 207 ETLTVSFAPNVPATGATNEWTMFVEDSA----------SGTIIGEYTIEFDDLAGLGGRL 256

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +     G+++    ++  +++         I +                 Q   N + 
Sbjct: 257 LSVNNTTGGAYTADGTVSVTTDSGTIEIDIGNIGEPGG------------LTQLSDNFAP 304

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +    + S         +     +   + +  ++     P+  ++    L+     S   
Sbjct: 305 VSIIKNGSPVGTMTSVEVDANGFVRALFDNGVSRIMYQVPLVDVSNPNGLISEDNQSYSV 364

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S    L          I          ++  EL+ LIK +++Y+ + K+I   D+
Sbjct: 365 --TPESGQFFLWDAGDGPTGDIVSFAREESATDVAAELTNLIKTQRAYSSNAKVIQTVDE 422

Query: 471 MLQTLLEGVK 480
           MLQ      +
Sbjct: 423 MLQETTNIKR 432


>gi|313896955|ref|ZP_07830502.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974402|gb|EFR39870.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 582

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 130/399 (32%), Gaps = 18/399 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  A  N       N      +   NI NA    Y R+   +  +               
Sbjct: 3   STFAGLNTMVKGIQNNQLSLDTTGHNITNASTPGYSRQSVNSAATNYQERSSLYGDVLVG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V  ++         DK   + +SA    +  ++     E +  +D  N    + + + 
Sbjct: 63  GGVDALSLTRARNIYADKQFWSETSAQNFYKTNKTNYDKVETIF-NDSKNTGILNAMKQF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            D+  + S   S+      V+     +V    T+A ++Q   A    E+ +++  +    
Sbjct: 122 YDAWVNLSNYASDAASRTAVLTKGNNLVDRLRTNANQLQDQIASQYDEMRIQVQKVNSIT 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +++ +N  I +   +   A+D  DQRD+L+ ++SEI  I+     N    V  S+G TL
Sbjct: 182 EQISRLNKNIMYAETNGAKANDLRDQRDLLVDQLSEITNINVYEEANGMYTV-VSNGMTL 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                R +  E              +   +  +   G     G +KAL          + 
Sbjct: 241 VNREGR-LTLEMSEPMNNEEYGITDYTIRIKEAGGIGYVPQSGVLKALQDTIVQD-KGYI 298

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           + L ++A  L+ +F++        +     ++     + +     G S T      +   
Sbjct: 299 DNLADIAATLLTTFNDVHKQGAGIDQDATTWLNFFGDNGNKSTATGGSYTGTHYTWHVDA 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +  R     +      V        + +    S  K  
Sbjct: 359 ATGERWMEQTAASVNKTVSGTTTTITMTDSVVASDKKKL 397


>gi|203284204|ref|YP_002221944.1| flagellar hook protein [Borrelia duttonii Ly]
 gi|201083647|gb|ACH93238.1| flagellar hook protein [Borrelia duttonii Ly]
          Length = 441

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/490 (10%), Positives = 122/490 (24%), Gaps = 63/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          +    +                  +NS          
Sbjct: 61  GVNPKQIGLGMTVAAVDTIHTQGSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               +  N +  +  +  +  +    Q FNTS+     I    DKE       +      
Sbjct: 121 DSNRHLVNPANGMRIQGWMAESVGGEQVFNTSSDIRDLIIPIGDKEGAKATEYI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++Q+ +  + I+      N  V  +   T + E
Sbjct: 175 ----------------TFACNLDKRLPVVQQGANEVDIARGTWVVNKTVYDSFGNTNVVE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++ T  + +  + ++G   S+       +G + +L     +        
Sbjct: 219 LR------VLKDATTPNTWNATVLVNGEENSNFTMGFDNEGALLSL-----NGQAGQPGD 267

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L E                     V      +G +   N     +        Q+    +
Sbjct: 268 LLEFPITF---------------GVIDANAGEGGEQTVNLRLGTVGSYADSITQFADAST 312

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     +   Y +   +      +A       L +       
Sbjct: 313 TKAIVQNGYGMGYMENYEIDQNGVITGVYSNGIRRTIGKIALASFVNPGGLAKAGD--TN 370

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 371 FTETSNSGQARIGETGFAGLGTIRSGVLEMSNVDLAEQFTDMIVTQRGFQANAKTITTSD 430

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 431 QLLQELVRLK 440


>gi|299531280|ref|ZP_07044690.1| flagellar hook-associated protein FlgK [Comamonas testosteroni S44]
 gi|298720687|gb|EFI61634.1| flagellar hook-associated protein FlgK [Comamonas testosteroni S44]
          Length = 648

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/375 (12%), Positives = 118/375 (31%), Gaps = 14/375 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N +   Y R+      S               V T
Sbjct: 2   SLLNVGARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGNGYIGNGADVAT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  + ++   A ++A        +     + +       N     I+ + ++    
Sbjct: 62  ILRNFSELLNRQATAATAASAADSARSNSLNQLQEVF--SGGTNGLGAAINDMMNAFADV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S   ++    + V+    E+   F +++ ++ ++     +++  +++ +     ++  +N
Sbjct: 120 SSAPTDSSARQVVLTRMSELAARFRSASAQLDEMDYSTRQQMSNDVNVVNSLSEQVAALN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+ H  +D LDQRD L++ I++ +  S +   +  + ++      L       
Sbjct: 180 GQISRAIATGHTPNDLLDQRDQLVRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAA 239

Query: 235 INFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               + ++    S    ++    G        +    G+I  LLQ +++ +   +N L  
Sbjct: 240 KLSLQESTQYPGSGKMSLYFQQQGGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           M   +  + + ++ +        G  + +                         + S L+
Sbjct: 300 MVISIGDTLNTQNQLGLTLSGQKGGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALK 359

Query: 353 DGGSVSKKFLWNVKN 367
                        K 
Sbjct: 360 ASDYKIVFGNDAPKG 374



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/444 (10%), Positives = 117/444 (26%), Gaps = 19/444 (4%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  NK +    + A   +I           L +  +      ++      K+    +  
Sbjct: 203 VRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQESTQYPGSGKMSLYFQQQ 262

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL------S 168
                E             ++Q  N    E + +       I   ++   +         
Sbjct: 263 GGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISIGDTLNTQNQLGLTLSGQK 322

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI----IGISTIVRNNNDMVVYTSDG 224
              + N  +    ++        D   V ++  S +      I          VV  SDG
Sbjct: 323 GGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALKASDYKIVFGNDAPKGKVVRLSDG 382

Query: 225 TT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKAL 275
            T     L +     I+  + +          +    V  +++    +        +   
Sbjct: 383 QTTAFNDLTDLRGMTIDGLQFDLKNDGQAGQSVLFSPVASAAHDIQTMVHSGNDLAVANP 442

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
           +  + + +     ++  +        S        S    G                   
Sbjct: 443 VSAKINSLGDAAVRMSSLKVEKGFDASTFSAGTTLSFAPDGAGGMTYTITPAPSGVAATG 502

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             I       +    +   G+ +     +     G     +    + +           +
Sbjct: 503 AYISGQAIELAPGLKVTLTGTPAVDGATSDTVSFGPNSFYSSDTGNASSFLSLRDAVIFD 562

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL +    ++  +      +      S  +  ++    +   GVNL EE + L++ +
Sbjct: 563 GATTLSDGFSTAMAQIGTRTQSAAYAAKLSDSIAKNLEGDRTAVSGVNLDEEAAKLLQYQ 622

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           QSY  S K++     +  ++++ V
Sbjct: 623 QSYQASAKMLQVAQGIFDSVIQAV 646


>gi|332305615|ref|YP_004433466.1| flagellar hook-basal body protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172944|gb|AEE22198.1| flagellar hook-basal body protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 460

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 130/483 (26%), Gaps = 35/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI N +   +            +             V  
Sbjct: 2   SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYASSLLAGGKTKVGDGVIT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L   ++++        F A    + + +             +   E++ 
Sbjct: 62  QEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDSREFS----FTRAGMFKLDAENFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + D L    ++          ++ + V+   +    +   E+S      +    VN 
Sbjct: 118 VNSNGDNLLGFPVNPDGTSSSVALSTTQPVRIPDSSGSPQPTSEVSLKMNLPAGDDAVN- 176

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                        D  D  D L    +  + +   + +++ M  Y        ++     
Sbjct: 177 ------------LDLFDPSDPLTYNAATSVTVFDSLGDSHVMTYYFM-----KDSAAASN 219

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            +           +      G   ++   + V +  +   +           +  +    
Sbjct: 220 EWVVATYMDEQPLNTEGDTIGNPPATGP-NVVGETSLGTGVAGYRMTFSAGGDFTEIQNA 278

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               S +           +             N        T     Q+ S         
Sbjct: 279 DGTPSPTGDIMSVALGGTILANGSDPSQTISTNFAFDPNVATADEPTQFASAFEVTSLEQ 338

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     +   Y +  ++  I   +     +  L +  +++  W E   
Sbjct: 339 DGLAVGRLTGIDIGADGLVRATYSNGTSEPIIRVALVRFANDQGLTQ--QSNTQWQESIL 396

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I+ S      VNL  EL  LI  ++++  +++ +   +++ QT+
Sbjct: 397 SGEALAGEATTGTFGDINSSALEQANVNLTTELIDLIIAQRNFQANSRALEVNNQLNQTI 456

Query: 476 LEG 478
           L  
Sbjct: 457 LNI 459


>gi|317492422|ref|ZP_07950851.1| flagellar hook-associated protein FlgK [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919761|gb|EFV41091.1| flagellar hook-associated protein FlgK [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 561

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/428 (13%), Positives = 140/428 (32%), Gaps = 16/428 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N A +  + A    +    N+ N   + Y R+      S             V V
Sbjct: 1   MANLINSAMSGLSAAQTALSVTSNNLSNVYTQGYNRQTVSFAQSGGISTSTGFIGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                E  +     L               ++ + ++ +     NNS +  +     +L+
Sbjct: 61  SGINREYNSFIVGQLRQ--GQSDYASTTAYYQQVSQIDNLLADSNNSLSANMQDFFSNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N S+    +TV+  A  +V  F T+   ++ + ++A+  +   +  +  +  ++  
Sbjct: 119 NLVSNPSDPAARQTVLAKANGLVNQFKTTDEYLKNLESNANVTVSNSVEQINNYTKQIAS 178

Query: 173 VNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T +      +D LD RD +  ++++I  +   +++     V  + G +L + 
Sbjct: 179 LNDQISRLTGASGGSAPNDLLDLRDQMATQLNQIANVEITMQDGAM-NVSFAGGLSLVQG 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S      +          S      +  G +  +LQ R   +   +NQL
Sbjct: 238 NDAYKLEAIPSSANPQRLTIGYNRGSGTASEVPEGRITGGSLSGILQFRSGALDNARNQL 297

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A  +  SF++      +                 +      +    VN    +  + 
Sbjct: 298 GQIALSMADSFNKVQQAGIDLNGDLTTNEPFFTIGQPSSFA-NSNNDKTVNASISAKYTD 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +    +   +  ++         L ++   +         +      VT+   A  S  +
Sbjct: 357 VSQTKATDYRLEYDKNGKWQITRLSDNSKITDLTPDATGKLQFDGLEVTVSPAAAKSDSF 416

Query: 411 LEKNRSDS 418
             K  S +
Sbjct: 417 TLKTTSSA 424


>gi|194365674|ref|YP_002028284.1| flagellar hook-associated protein FlgK [Stenotrophomonas
           maltophilia R551-3]
 gi|194348478|gb|ACF51601.1| flagellar hook-associated protein FlgK [Stenotrophomonas
           maltophilia R551-3]
          Length = 626

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 125/406 (30%), Gaps = 16/406 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTV 52
           + +V +          +  A+   N+ N +   Y R+                      +
Sbjct: 1   MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNFATADPQNYGYGTVGNGTRI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R     +    L   S  + + + L S       + +D     + +   S   DS+ 
Sbjct: 61  TDIRRTADQLAISRLLDSSGELARLKQLSSMADRVNALVSDPA--TNVSGVWSNFFDSVS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S N +     + ++D  + +   F      +  +  + +  +    + + R   E+  
Sbjct: 119 GLSSNAAGTADRQNMLDGGKALANRFVQLNTHLNNLNGEVNNGLLAGATEVNRLAQEIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N AI   T   + A D LD+RD L+ ++    G + ++++   M VYT+ G  L     
Sbjct: 179 INGAI--GTNIANAAPDLLDRRDQLITQLIGYTGGTAVIQDGGIMNVYTAGGNALVVGTT 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + Y        +   G  +  +  +    G+I  LL+ RD+V+   Q +L +
Sbjct: 237 ATKVTTVADPYQPERLQLALETQGNTIRLDPKA--VGGQIGGLLEFRDTVLTPAQAELGK 294

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  SF++      +     G    +                              +
Sbjct: 295 LAVGLAESFNQAHHQGVDLYGKLGGDFFNIGNPRVTANNANTGTASLTATYGDLGKLDAQ 354

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
           +         W         ++      +     + + V  +    
Sbjct: 355 NVVLQFDGSNWKASRADTGANVPLTGTGTAADPLVINGVKMVVGGT 400



 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/373 (8%), Positives = 96/373 (25%), Gaps = 5/373 (1%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +     + +         ++          +   +A+  K       +  +   +   
Sbjct: 253 QLALETQGNTIRLDPKAVGGQIGGLLEFRDTVLTPAQAELGKLAVGLAESFNQAHHQGVD 312

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKI-SEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +   +     +  +     +  +     + +    +  +   N  +    S+        
Sbjct: 313 LYGKLGGDFFNIGNPRVTANNANTGTASLTATYGDLGKLDAQNVVLQFDGSNWKASRADT 372

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++      +       N + +      +     + +        +  ++    +    
Sbjct: 373 GANVPLTGTGTAADPLVINGVKMVVGGTPAANDRFLLQPTAGVAGSMEIAITDPSRIAAA 432

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +    + +                                       PQ  +    +
Sbjct: 433 AAVKGAAATANTGTGKLSGVTVTDSNNANLRNPAAIVFTSATTYTIDGGPPQTYTPGQTI 492

Query: 352 RDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              G          + +  N+   P   +   ++     +    A     VTL       
Sbjct: 493 SANGWSFVLDGAPKVGDTFNITPTPAGSSDNSNASKLAKVESAKAFNAGTVTLNGALGGL 552

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      +        V+ +   E+     GVNL EE + +++++Q+Y  +++LI  
Sbjct: 553 TTQVGAAARSAEYSLDAQLVINDKAQEARDEVSGVNLDEEAADMLRLQQAYQAASQLIST 612

Query: 468 TDKMLQTLLEGVK 480
            D M QT+L  V+
Sbjct: 613 ADSMFQTILGAVR 625


>gi|332140552|ref|YP_004426290.1| flagellar hook-associated protein FlgK [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550574|gb|AEA97292.1| flagellar hook-associated protein FlgK [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 680

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/427 (14%), Positives = 140/427 (32%), Gaps = 14/427 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MS + +F+ A +  N +S+   +   NI N +   YVR  T    S    V +       
Sbjct: 1   MSSVDLFSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELQNSQVFGVEIGNTERII 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L    +A+G+     S     + + A +   NS +  +S+   +L++ + + +
Sbjct: 61  NVFAQNQLRRDITAVGELEAFSSKTTAIDNLLASEA--NSISQGLSEYFSALQTAADDPT 118

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                + V+  +E + Q   T +  + +   + + E    +      +S +  +N+ I  
Sbjct: 119 NLASREQVLGKSESLFQRVKTLSDFMIEKEEELNLEFTALVDRANTLISNIGELNEGIVI 178

Query: 180 KTASKH--DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT--SDGTTLFETVPRDI 235
              +         L++RD  + ++S I+GI+       +  V    + G +L        
Sbjct: 179 ANGNSTSDQPGALLNERDKAVDELSSIMGINVKESKTQNGAVSINLTSGESLVLENGELN 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPIFQNQL 290
            FE  ++    S+   +          + S     +   G +  L + RD V+      +
Sbjct: 239 LFEVSSNADTASKQLSLQNVFSSEFDEEKSLRIRESDLGGALGGLFRYRDEVLGPAMRDV 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +++     + ++++ +  + +   G  I D              + I          + 
Sbjct: 299 GQLSIAFADAMNQQNKLGMDLDGQLGGNIFDIPSFRGLPYEDTDGDLIVTGRVTEGKGAE 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L D     +    +          +             D        VT+          
Sbjct: 359 LTDADYKIRVTAVSGGVPTEI--EVTFLNADGTIKKASDGQEIPPETVTISSGFNELPRG 416

Query: 411 LEKNRSD 417
           +E + S 
Sbjct: 417 IEVDFSG 423



 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 64/184 (34%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L  + S+    A +S +V                 + + +   + P    + S      +
Sbjct: 497 LNTAPSQIRFTAADSYDVLDGTGNVLASVSGTSDLKNLIDQAAITPAPGYDISLDGVPRA 556

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                +    +         +  D  N++ +       N   T  +   + +G +    S
Sbjct: 557 GDTFTIEYNTDGFNDNSNALNLADLQNESLVQLSSEATNKPRTFQDAYASMVGRIGGEAS 616

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ +       + +  GV+L EE + LIK +QSY  + +++    ++  T+L
Sbjct: 617 MAKVSLASAEAMKVQSENWFQSVSGVSLDEEAANLIKYQQSYAAAARILTTAQELFNTIL 676

Query: 477 EGVK 480
           +  +
Sbjct: 677 QSAR 680


>gi|320530514|ref|ZP_08031572.1| flagellar hook-associated protein FlgK [Selenomonas artemidis
           F0399]
 gi|320137347|gb|EFW29271.1| flagellar hook-associated protein FlgK [Selenomonas artemidis
           F0399]
          Length = 582

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 130/399 (32%), Gaps = 18/399 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
           S  A  N       N      +   NI NA    Y R+   +  +               
Sbjct: 3   STFAGLNTMVKGIQNNQLSLDTTGHNITNASTPGYSRQSVNSAATNYQERSSLYGDVLVG 62

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V  ++         DK   + +SA    +  ++     E +  +D  N    + + + 
Sbjct: 63  GGVDALSLTRARNIYADKQFWSETSAQNFYKTNKTNYDKVETIF-NDSKNTGILNAMKQF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            D+  + S   S+      V+     +V    T+A ++Q   A    E+ +++  +    
Sbjct: 122 YDAWVNLSNYASDAASRTAVLTKGNNLVDRLRTNANQLQDQIASQYDEMRIQVQKVNSIT 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +++ +N  I +   +   A+D  DQRD+L+ ++SEI  ++     N    V  S+G TL
Sbjct: 182 EQISRLNKNIMYAETNGAKANDLRDQRDLLVDQLSEITNVNVYEEANGMYTV-VSNGMTL 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                R +  E              +   +  +   G     G +KAL          + 
Sbjct: 241 VNREGR-LTLEMSEPMNNEEYGITDYTIRIKEAGGIGYVPQSGVLKALQDTIVQD-KGYI 298

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           + L ++A  L+ +F++        +     ++     + +     G S T      +   
Sbjct: 299 DNLADIAATLLTTFNDVHKQGAGIDADATTWLNFFGDNGNKSTATGGSYTGTHYTWHVDA 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +  R     +      V        + +    S  K  
Sbjct: 359 ATGERWMEQTAASVNKTVSGTTTTITMTDSVVASDKKKL 397


>gi|206896555|ref|YP_002246691.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM
           5265]
 gi|206739172|gb|ACI18250.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM
           5265]
          Length = 519

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/522 (9%), Positives = 116/522 (22%), Gaps = 47/522 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPEN 49
           +L  F    +       +   I  NI N +   Y       +                  
Sbjct: 1   MLRSFFNGISGLKVHQIRIDVISNNIANVNTTAYKAARATFSDVVALTLKGARAPYGGRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T  +Q      +                         +          +          
Sbjct: 61  GTNPSQVGLGVGLATIDNIMTQGPTNNTNRASDLAIQGDGFFVVSDGQRNWFTRDGAFDI 120

Query: 110 SL-------------ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
            L             + +S   ++ I     +  A              + +     +  
Sbjct: 121 DLTGRLIQLSTGLKVQGWSMIPTQKIRFGGTVGTASTSFGFRVYDNEGNEHVFTALVQPT 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +            +  +                +  +L   +  I +       ++
Sbjct: 181 PSGSTAAIHIYEGTDTASPNLVLTQTLGFANGVVQAGQTGVLNWNNMSINLDFTSLGMSN 240

Query: 217 MVVYTSDGTTLFETV---------PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
             V       + E           PR +      +  V  + N         +     + 
Sbjct: 241 ATVSALVADPVVEPDTNKVGDIVIPRSLTIPPTPTTNVQFQGNLNANAPEGANVTFTVSN 300

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
               +     +  + V        ++   +  +   +  +  +S+        DG     
Sbjct: 301 VIDSLGVTHSMLINAVKSASPNTWDVTVSMESASPVQYVVTFDSDGRISDVKKDGQSYGT 360

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG---------YPDLINHY 378
                          Q   N S +    + S+       N+ G            ++  +
Sbjct: 361 TPTIDFDPGNGAQTRQITLNFSAITQYAADSRVVGLVDGNVNGKLLSWFVTDEGKVMGEF 420

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +   +      +A       L     N   W     S           + + I      
Sbjct: 421 DNGQIRELAQIALANFQNPAGLSREGNNL--WQNTANSGFRGYVEAGD-LGSLIIRGALE 477

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  V+L EE + LI  ++ +  S ++I  +D++ Q ++   +
Sbjct: 478 SSNVDLAEEFTNLIITQRGFQASTRVITTSDEVTQDIIGLKR 519


>gi|149184213|ref|ZP_01862531.1| Flagellar hook-associated protein [Erythrobacter sp. SD-21]
 gi|148831533|gb|EDL49966.1| Flagellar hook-associated protein [Erythrobacter sp. SD-21]
          Length = 446

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 134/490 (27%), Gaps = 59/490 (12%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENV 50
             + + A +    A        +NI NA ++ YVRR                   S    
Sbjct: 3   SDLLSIAASGARAARGALDVTAQNIANASSEGYVRRSLRIEEVAASGGAGRIGDISLSGA 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   R          +   S  + +           E         +     I +   +
Sbjct: 63  RIAEIRRNADAFLQGEVRRTSGDLERANTELRGLRNMESAL----EQSGVFSSIVEFEAA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+  + +  +      VI  A  +   FN +A     +      E E ++S       EL
Sbjct: 119 LQQLAGDPVDPSRRAAVIGEATTLANKFNITASSFDAVGEGLQFEAEAQVSETNVIGGEL 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             VN  +    A   D    LDQRD LL++++    IST    +  + V       L   
Sbjct: 179 ARVNLRLTRAGAGSSDRAALLDQRDQLLERLASFTSISTTFEADGTVAVSLGASPPLGFV 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                           +    I       S   GS    G    L +     +   + +L
Sbjct: 239 QGGTSGTMSSVEMADGTIGFSI----DGQSVEPGSGSLAGAALGLAE-----LATVRTRL 289

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D +A  L G  +       + +   G  I                          +  + 
Sbjct: 290 DTIAATLAGVVNNAQAAGVSLDGSSGQPIFA-----------------------GTTAAG 326

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           LR   S            +       +           DP   +           N +  
Sbjct: 327 LRVVMSEGAGLATAPAGASANSRDDANLGALRQSLAALDPAQQL----------SNVLFD 376

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +  +      + + +    S     GV+L  E + LI+ +Q++  S + +     
Sbjct: 377 VSSKVAGRNVTQSALETIASSARISLEQQSGVDLDTEAANLIRFQQAFQASGRAMQAASD 436

Query: 471 MLQTLLEGVK 480
           +  TLL   +
Sbjct: 437 IFNTLLGIGR 446


>gi|163850384|ref|YP_001638427.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens
           PA1]
 gi|163661989|gb|ABY29356.1| flagellar hook-associated protein FlgK [Methylobacterium extorquens
           PA1]
          Length = 632

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 142/453 (31%), Gaps = 20/453 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60
           L  F+ A         Q   + +NI N     YVRR      +      V   T      
Sbjct: 3   LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K L A SS      L+       + +       ++     +    SL++ + N + 
Sbjct: 63  AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                TV+  A ++     ++A  VQ +R+  + ++  +       L++L  +N  I   
Sbjct: 123 TAARATVLSAANDLATRIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232
            +      +  DQRD  L  +S +I I+ + +++  + V TS G TL +           
Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242

Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +  +    S +           G  +      A+  G I A +++RD+V+P  Q
Sbjct: 243 RGTLSANALYASDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTVLPQAQ 302

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  L  + S++        +         +  L          T+ V     + 
Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +      +                +  +               +   +T       +
Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRNAITAALGGGYT 418

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +  +    + +  +           S S +   
Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451



 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                S+VP G+  A+  +      +             G             +     +
Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
             G  D  ++L               S  S +   G+ +   + +          +    
Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +          T  ++ ++ +  I       + + DL     +  +     +++ 
Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            GVN+ EE+S LI ++Q+Y  + +++     M+ TLL
Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630


>gi|221069316|ref|ZP_03545421.1| flagellar hook-associated protein FlgK [Comamonas testosteroni
           KF-1]
 gi|220714339|gb|EED69707.1| flagellar hook-associated protein FlgK [Comamonas testosteroni
           KF-1]
          Length = 648

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/375 (12%), Positives = 118/375 (31%), Gaps = 14/375 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N              +   NI N +   Y R+      S               V T
Sbjct: 2   SLLNVGARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGNGYIGNGADVAT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  + ++   A ++A        +     + +       N     I+ + ++    
Sbjct: 62  ILRNFSELLNRQAAAATAASAADSARSNSLNQLQEVF--SGGTNGLGAAINDMMNAFADV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S   ++    + V+    E+   F +++ ++ ++     +++  +++ +     ++  +N
Sbjct: 120 SSAPTDSSARQVVLTRMSELAARFRSASAQLDEMDYSTRQQMSNDVNVVNSLSQQVAALN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+ H  +D LDQRD L++ I++ +  S +   +  + ++      L       
Sbjct: 180 GQISSAIATGHTPNDLLDQRDQLVRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAA 239

Query: 235 INFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               + ++    S    ++    G        +    G+I  LLQ +++ +   +N L  
Sbjct: 240 KLSLQESTQYPGSGKMSLYFQQQGGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           M   +  + + ++ +        G  + +                         + S L+
Sbjct: 300 MVISIGDTLNTQNQLGLTLSGKKGGALFNIPMTTTGSTTGAQWTQPDTPTVTVKDSSALK 359

Query: 353 DGGSVSKKFLWNVKN 367
                        K 
Sbjct: 360 ASDYKIVFGNDAPKG 374



 Score = 87.4 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 119/444 (26%), Gaps = 19/444 (4%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  NK +    + A   +I           L +  +      ++      K+    +  
Sbjct: 203 VRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQESTQYPGSGKMSLYFQQQ 262

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL------S 168
                E             ++Q  N    E + +       I   ++   +         
Sbjct: 263 GGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISIGDTLNTQNQLGLTLSGKK 322

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI----IGISTIVRNNNDMVVYTSDG 224
              + N  +    ++        D   V ++  S +      I          VV  SDG
Sbjct: 323 GGALFNIPMTTTGSTTGAQWTQPDTPTVTVKDSSALKASDYKIVFGNDAPKGKVVRLSDG 382

Query: 225 TT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKAL 275
            T     L +     I+  + +          +    V  +++    +        +   
Sbjct: 383 QTTAFNDLSDLRGMTIDGLQFDLKNDGQAGQSVLFSPVASAAHDIQTMVHSGNDLAVANP 442

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
           +  + + +     ++  +        S   P    S    G                   
Sbjct: 443 VSAKINSLGDAAVRMSSLKVEKGFDASTFPPGTTLSFAPDGAGGMTYTITPTPSGVAATG 502

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             I       +    +   G+ +     +     G  +  +    + +           +
Sbjct: 503 AYISGQAIELAPGLKVTLTGTPAVDGTTSDTVSFGPNNFYSSDTGNASSFLSLRDAVIFD 562

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL +    ++  +      +      S  +  ++    +   GVNL EE + L++ +
Sbjct: 563 GATTLSDGFSTAMAQIGTRTQSAAYAAKLSDSIAKNLEGDRTAMSGVNLDEEAAKLLQYQ 622

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           QSY  S K++     +  ++++ V
Sbjct: 623 QSYQASAKMLQVAQGIFDSVIQAV 646


>gi|293605003|ref|ZP_06687399.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553]
 gi|292816608|gb|EFF75693.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553]
          Length = 489

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/492 (11%), Positives = 123/492 (25%), Gaps = 22/492 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N A+Q    I  NI N+    +            +  V           ++
Sbjct: 2   GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKV--AAINQ 59

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +   G      + +  K M    D           +      ++  N     L  
Sbjct: 60  RFTVGTVQGGGGEYDIAIDGAKGMFRLTDQSGAVMYSRNGEFLVDKNNFIVNAQGYRLTG 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              V          +    +N +      TV   A+        
Sbjct: 120 YPAGAIGANPVELQLPTANVAPKATATGTTVANLDANAKVVYPTDTVTAPAVDGSVTLGG 179

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             + F       L                N + V  +   T  +            + T 
Sbjct: 180 TPYTFTRDALGALVWSGATPPAGNYGAAPNVVTVDATGAITAGDITQVPGYVNYTAAVTE 239

Query: 246 TSESNPIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                   +     +++  +         + +            N + ++   + G    
Sbjct: 240 IGRPFDPSVSNSYTNASPMTVFDSLGNSHQVMQYFVKRPADAAGNSVYDVYYTMDGQAMA 299

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
               AG        F  +    L +     +S          ++P  +    + + ++  
Sbjct: 300 PTTEAGGVWGNAQQFTFNKAGALTSAPVVTLSFAQPGGATTPADPLSIAMNYTGTTQYGS 359

Query: 364 N----------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           N                  N+ G   L+  Y +   +      +A  +    L     N 
Sbjct: 360 NYKLVAKPDGYTSGEFSGINIGGDGSLVASYTNGETQVVGNIVLADFSNLQGLQPVGNN- 418

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             W E + S    L        + +    +    V++ +EL  +I  +++Y  +++ I  
Sbjct: 419 -AWTETSASGQPILGQPGTNGMSRVVGQATEASNVDMSKELVNMIIAQRTYQANSQTIKT 477

Query: 468 TDKMLQTLLEGV 479
            D+++Q L+   
Sbjct: 478 QDEIMQVLMNLK 489


>gi|227112527|ref|ZP_03826183.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 564

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 141/414 (34%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +    A    +++  NI N     Y R++ +   +             V V
Sbjct: 1   MSNLINTAMSGLKGAQVALSTVSNNISNQAVTGYSRQNAILEQAISSSTSAGYIGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +        L A  +      +   +E + ++ +       S +  I     +L+
Sbjct: 61  VSINRQYNEFITNQLRAAQTTSS--SVSAYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N  +    +TV+  AE +V  F  + + ++ + +  + +I+  +  +  +  ++  
Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSIVGQVNTYTDQIAS 178

Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I       S    +D LDQRDVL+ ++++++G+   V++     V   +GT L + 
Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDVLVDQLNKLVGVEVTVQDGIVYNVALKNGTNLVQA 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +         V S   S +  G +  LL  R   +   + QL
Sbjct: 239 GTSNELVAIGSSNDPTRLTIGYKDQTNDVVSLNESTLTGGSLGGLLSFRTETLDEARGQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +   V G       K +     +     +       +    
Sbjct: 299 GQLALAFADAFNTQHQQGYDRNGVKGGDFFSFGKAVVLNDSKNAGNAVLTPSYTDTKDVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +         W V  L+           S N          I       +  
Sbjct: 359 ATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDNSLNFDGVKMAITGTPATNDSF 412



 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/425 (9%), Positives = 115/425 (27%), Gaps = 17/425 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114
            +  +  +  + +    +       +    +       +    P   + +    ++    
Sbjct: 152 RDMDSGLNTQIQSIVGQVNTYTDQIASLNNEITKLMGANSGTMPNDLLDQRDVLVDQLNK 211

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
              +   +    V + A +   N   +    + +   +  +        +   +++  +N
Sbjct: 212 LVGVEVTVQDGIVYNVALKNGTNLVQAGTSNELVAIGSSNDPTRLTIGYKDQTNDVVSLN 271

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           ++     +         +  D    ++ ++        N      Y  +G    +     
Sbjct: 272 ESTLTGGSLGGLLSFRTETLDEARGQLGQLALAFADAFNTQHQQGYDRNGVKGGDFFSFG 331

Query: 235 INFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 +S    +    P + D   V +   S    G    + ++ D+          + 
Sbjct: 332 KAVVLNDSKNAGNAVLTPSYTDTKDVQATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDN 391

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +    G           +++     + D I D+   +               +    L  
Sbjct: 392 SLNFDGVKMAITGTPATNDSFLLKPVNDVIIDMAVAVSDPNKIAAASVKLDENGAPVLDG 451

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G+     + +  N      L N                 +    ++     + +G +  
Sbjct: 452 SGNPVFGGVSDNTNAKALLALQNEKI--------------VGGKASVSGAYASLVGAIGN 497

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S     +   Q V   ++    +  GVNL EE   L++ +Q Y  + ++I     +  
Sbjct: 498 QTSTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRYQQYYMANAQVIKTAQSIFD 557

Query: 474 TLLEG 478
            LL  
Sbjct: 558 ALLAA 562


>gi|308273550|emb|CBX30152.1| hypothetical protein N47_D29610 [uncultured Desulfobacterium sp.]
          Length = 584

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 131/401 (32%), Gaps = 17/401 (4%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRS 57
           + A +  +           NI N +   Y R++ +                 V + T R 
Sbjct: 9   DIANSALSAQRYGIEITSHNIANVNTNGYTRQNPIYEAKLPGSYSNLLLGRGVDISTVRR 68

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +    +  L    S +     ++++  + E +  ++    S ++ +S   +  +  S N
Sbjct: 69  ISDQFIENQLMQQKSDLSSYEEMENYMKVLEGIF-NEDSETSMSNMMSDFWNLWQDISNN 127

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +       + + + ++    NT    ++++  +    I   I N+ +  SE+   N  I
Sbjct: 128 PAGYPERSALYEYSVQLADQLNTLDLSMRQVEINLTNSISSGIGNINQLTSEIAKTNKQI 187

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                S   A+D  D+R+ L+ ++S  I + +  ++N  + V T+ G  L          
Sbjct: 188 VGME-SASIANDLRDKRNELISQLSGYIDVKSFEQDNGTLTVVTARGCVLVNGNDSSEL- 245

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               +    + +   +      +++    +  GK+   L +RD ++  +Q  +D + + L
Sbjct: 246 ----ALGGVNGNKVEWQGSGGSTTDITGYITNGKLGGWLDMRDQILSKYQLDMDSLTKEL 301

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             S +++         +  +    G    +  +    S     +     + +        
Sbjct: 302 AWSVNQQHSQGVGLSTLSTVTGTYGATATNQAMSTASSGLDYYSKVQAGSFNLWVYDADG 361

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
           +                +     + +   +         N 
Sbjct: 362 NVVGTGATPINITAGTTLEDLESAIDLVDVNIDATITTDNT 402



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 77/268 (28%), Gaps = 14/268 (5%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           TL              + +  S     +      S N       G +        ++   
Sbjct: 317 TLSTVTGTYGATATNQAMSTASSGLDYYSKVQAGSFNLWVYDADGNVVGTGATPINITAG 376

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
              +  E A  L+    +      N+  +            D                  
Sbjct: 377 TTLEDLESAIDLVDVNIDATITTDNTLKITADNGYTFAFSEDTSNVLAALGINTFFSGSS 436

Query: 346 S------NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF--------DPV 391
           +      +          + +   +    +G         D  N +           +  
Sbjct: 437 AGDISVNDTISSNMNSIAAARVGSDGSIASGDNSNAISISDLQNTSIPISIWTCDRINGN 496

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
              +   +L +Y  +  G +    +   +    ++V+F+ IS    +   V+L EE++ L
Sbjct: 497 TEGSVTTSLEDYYHSLAGSIGTASAGVSNSKDFNKVMFDKISGLRDSISAVSLDEEMANL 556

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           IK +Q+Y  + KLI   D+ML TLL   
Sbjct: 557 IKFQQAYTAAAKLISIADEMLDTLLNVK 584


>gi|104782836|ref|YP_609334.1| flagellar hook-associated protein FlgK [Pseudomonas entomophila
           L48]
 gi|95111823|emb|CAK16547.1| flagellar hook-associated protein FlgK [Pseudomonas entomophila
           L48]
          Length = 681

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/446 (11%), Positives = 137/446 (30%), Gaps = 17/446 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N   +    A     ++  NI NAD ++Y R+  +                  T+
Sbjct: 1   MASLINIGMSGLGAAQSGMYTLGNNIANADVESYSRQQIVQKTKGSQQVGQVFIGTGTTL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  +  L   +S           + +  +  A    +   T  +     + +
Sbjct: 61  ADVRRVYNSFLENQLRTTTSLS--ADASSYLDQVAPLDKALYGTDTGITAALKSFFTAAQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S   +ED   + ++ +A+ + + FN  + ++ +  ++ +  ++     +    S +  
Sbjct: 119 DASAKPTEDASRQLLLTSAQTLAKRFNALSAQMNQQNSNINSNMKSIADQVNNLTSTIAD 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N  I    A     +D LDQRD  +++++++IG+  + R  N   +Y  +G +L     
Sbjct: 179 YNQQIVRMAAITGQPNDLLDQRDGAVRELNKLIGVDVVEREGNY-DIYLKNGQSLVLGTG 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +    T     + ++      +   +   G++  L++ R   +    N+L  
Sbjct: 238 TQKLETAPSPTDPTR--MSLVLNRGSTKMDITDSASGGEMGGLIRYRKDTLDPALNELGR 295

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A V+  + + +     +     G  +   I        + + +          N +   
Sbjct: 296 VALVVSDAINSQLAQGIDKNGEFGALLFGDINSAKAISERSVPKLGNNPAT--GNLNVTI 353

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                     + V   +G    +    D  +                           + 
Sbjct: 354 KDTGKLSTNDYQVTFTSGTGYNVRRLPDGKDMGNFDLSTNPPPVIDGFSLALNGGAPSVG 413

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSN 438
            +   +   +    +           
Sbjct: 414 DSFKITPTRNAAGTIDSTLTDPKRLA 439



 Score = 77.4 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 87/317 (27%), Gaps = 13/317 (4%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            + F + + ++     D +D+    +S          +        S G +   T  R+ 
Sbjct: 365 QVTFTSGTGYNVRRLPDGKDMGNFDLSTNPPPVIDGFSLALNGGAPSVGDSFKITPTRNA 424

Query: 236 NFEKMNSYTV------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++ T        +    +   G   +          K+      + S +      
Sbjct: 425 AGTIDSTLTDPKRLAFAAPLTAVNASGNKGTGLITQPTLTSKLDIYDATQRSDLQAGLKY 484

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVP-------GLFIADGIKDLDNKLCQGISETICVNP 342
              +  V     S +     +++                    +      G         
Sbjct: 485 STPVKLVFGNETSPQAYTMFDAQGNNIGSGTIVPGQNNKLQLSVPMVDGSGNPINDASGV 544

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q + N      G   +          +G  D  N       +      V      +++ +
Sbjct: 545 QKKFNFEMDITGAPKNGDSFTVSLTGSGSADNRNAQSVIGLQTKSTVEVGADGKGISMTD 604

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                +  +    S +      +  +     +S +   GV++ EE+  L+K +Q Y  S+
Sbjct: 605 AYAKLVSNVGGKASQASMDADATNALQASALDSRNTASGVSVDEEVGNLVKFQQYYTASS 664

Query: 463 KLIMFTDKMLQTLLEGV 479
           ++I    +   TL+  +
Sbjct: 665 QIIKAAQETFATLINSL 681


>gi|39995527|ref|NP_951478.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA]
 gi|39982290|gb|AAR33751.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA]
 gi|298504527|gb|ADI83250.1| flagellar hook protein FlgE [Geobacter sulfurreducens KN400]
          Length = 419

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/481 (8%), Positives = 105/481 (21%), Gaps = 63/481 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+ +      +  N   +  + I  NI N +   + +   + +    +      +    
Sbjct: 1   MSVTSALYTGISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQIGRG 60

Query: 61  NMFDK-VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                        +              +      + +            + +    N  
Sbjct: 61  VQIQTVENQFTQGSFESTESGTDLAIQGDSFFVVQNTSGRYYTRAGAFSFNKDKTLVNPE 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +    I  +  +                                          I  
Sbjct: 121 GYQVMGYGIIPSSGLSDGVL-----------------------------------KPIDL 145

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +          + V+    ++          N       S   +++++         
Sbjct: 146 TNFATTPPKQTSTVKFVVNLDSTQTTPTLAWDPANPVATSNYSTSLSVYDSQGNAHTATV 205

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
               T  +  +   I     +   GS      I   L    +     Q  L   A+ +  
Sbjct: 206 YFRKTADNAWDWHVILPDAAAGTPGSTTTP--IDGTLTFDATGALTAQTPLAGAAQNITF 263

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +                         +           +    QY S+            
Sbjct: 264 AG-----------------------GVTAPQPIFFDLGVGATTQYASSSVVSSQTQDGYY 300

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +       +     +   Y +   +      +A  ++   L +         E   S   
Sbjct: 301 QGTLTKVTIDDKGYVNGVYSNGQLQKLYQVALAKFSSTAGLSKAGGTLFE--ETLESGQP 358

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                S      I  +      V++  +   +I  ++ Y+ ++K I   D+MLQ +L   
Sbjct: 359 LFSDASTPGVGKILANSLEQSNVDMAAQFVKMITTQRGYSANSKTITTADEMLQEVLSLK 418

Query: 480 K 480
           +
Sbjct: 419 R 419


>gi|326204617|ref|ZP_08194473.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985184|gb|EGD46024.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM
           2782]
          Length = 443

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/478 (9%), Positives = 110/478 (23%), Gaps = 35/478 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +       +   I  N+ N +   +                         +
Sbjct: 1   MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTFQ----------------EI 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F++ L    +         +      +  A    +N  T    +  D       N ++  
Sbjct: 45  FNQTLRGAGAPDAATARGGTNPMQIGLGIAVGSIDNQMTGGSPQRTD-------NPTDLS 97

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        +    +     R            +  +  N+  +       +  +KF T 
Sbjct: 98  ISGNGFFIVKGSAADTFKFTRAGNFGLDKLGNLVSGDGMNVYGWTKYEQQGDGTVKFDTE 157

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +     +         +KI      +               G                 +
Sbjct: 158 APIGPINLYSDATNGNKKIIAAKATTYAE----------FSGNLNSAQKAVATPPATPPA 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                       D +  +        K               +     D    +      
Sbjct: 208 SDEQFIMPYTVFDSLGNAHEMTLTFTKAAPTGTPPTTTWTYTLAAKAGDGTVPIPTTGTL 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           + D       +     I   +          ++       Q+  + S      +      
Sbjct: 268 KFDGEGK-LTSDTVNSIKVTMTPTAGANPFDVTLDFKKLTQFSGDSSVKPSNINGYTTGN 326

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+     +   Y +   +      +AG +    L +   N       N  D +   
Sbjct: 327 LVTFNIGSDGMITGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNLFMPT-TNSGDFNKGV 385

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    +S        V+L  E + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 386 PAGSQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELVNLKR 443


>gi|332311130|gb|EGJ24225.1| Flagellar hook-associated protein 1 [Listeria monocytogenes str.
           Scott A]
          Length = 494

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/507 (14%), Positives = 153/507 (30%), Gaps = 54/507 (10%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVVTQRSENKN 61
            + A        +NI N +   Y+R+    T             +   V V   +     
Sbjct: 1   MSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVKVTDIKRLTNT 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                 +   +                 +      N  P+  +     +  + +KN  + 
Sbjct: 61  ALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQA 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                ++ +        N     ++++      + +  I +L   + +L  +N AI    
Sbjct: 120 TNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GN 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L              
Sbjct: 178 AGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS-- 235

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T T+      +DG  ++      +P+G I A +++  + +  +Q +++  +  L  + 
Sbjct: 236 --TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNSLAKAL 287

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-------CVNPQYRSNPSFLRDG 354
            +      N        I D +K   N      +                  +   +   
Sbjct: 288 DDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRLLEKFPGVTRSGDTLTIGGV 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----------------- 397
                    +          I  +  S  K  +   +     N                 
Sbjct: 348 DHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASLKTD 407

Query: 398 -----VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 T   +    I  +  + S S           N +SES S+  GVN+ EE++ ++
Sbjct: 408 KNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIM 467

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +  Y  + K +   + M++ LL  +
Sbjct: 468 QYQSYYVANTKAMNTVNDMMKALLAML 494


>gi|89067517|ref|ZP_01155030.1| flagellar hook protein FlgE, putative [Oceanicola granulosus
           HTCC2516]
 gi|89047086|gb|EAR53140.1| flagellar hook protein FlgE, putative [Oceanicola granulosus
           HTCC2516]
          Length = 433

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/489 (10%), Positives = 128/489 (26%), Gaps = 65/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQ 55
           M++ +  N +       + + A+I  NI N+    Y R  T              +    
Sbjct: 1   MTISSSLNASVAGLTANASRLATIADNIANSSTFGYKRATTDFHSMVLNTTEGTYSAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSL 111
           R   + + D+   + +  +        +    +     +   +  +          R   
Sbjct: 61  RVTTQRLIDQRGSIVSTDNVTDLAVRGRGMMPVSTEAALGTGNASSQFLLTSTGSFRVDD 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + Y  + S  IL          V      +A  +Q IR +A++      + +   L+   
Sbjct: 121 QGYLASQSGLILMGWPAGIDGNVPAFPRDTADGLQPIRINANQSAGEATTYIDVGLNLPA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              +        +     + +        I+    +     +N                 
Sbjct: 181 TSTEFSSTGEPEELTVAYYDNLGTSETLSITFTPTVPAAGSSNEW--------------- 225

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                     +  +T  ++   + G        +    G + ++  +          ++ 
Sbjct: 226 ----------TMQITDSASAGAVVGEYTLVFDDTRGAGGTLASITPVSGGAYDPVTGRVT 275

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                                                ++  G+        Q   N + +
Sbjct: 276 VNVEG-----------------------------GPLEVGLGLLGEPGGLTQLSDNFAPV 306

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 +        ++     +   +    +K     P+  ++    L    +    + 
Sbjct: 307 SILKDGNAVGSMTSIDIDANGFMRAAFDTGISKVIYQIPLVDVSNVNGLETLDQQ--TYR 364

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S S+ L          +          ++  EL+ LI+ +++Y+ + K+I   D+M
Sbjct: 365 ATPESGSYFLWDAGDGPTGDLLSYALEESATDVAGELTELIQTQRAYSSNAKVIQTVDEM 424

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 425 LQETTNIKR 433


>gi|218528944|ref|YP_002419760.1| flagellar hook-associated protein FlgK [Methylobacterium
           chloromethanicum CM4]
 gi|218521247|gb|ACK81832.1| flagellar hook-associated protein FlgK [Methylobacterium
           chloromethanicum CM4]
          Length = 632

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 143/453 (31%), Gaps = 20/453 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60
           L  F+ A         Q   + +NI N     YVRR      +      V   T      
Sbjct: 3   LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K L A SS      L+       + +       ++     +    SL++ + N + 
Sbjct: 63  AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                TV+  A ++     ++A  VQ +R+  + ++  +       L++L  +N  I   
Sbjct: 123 TAARATVLSAANDLATRIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232
            +      +  DQRD  L  +S +I I+ + +++  + V TS G TL +           
Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242

Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +  +    S +           G  +      A+  G I A +++RD+V+P  Q
Sbjct: 243 RGTLSANALYASDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTVLPQAQ 302

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  L  + S++        +         +  L          T+ V     + 
Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +      +                +  +               + + +T       +
Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRSAITAALGGGYT 418

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +  +    + +  +           S S +   
Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451



 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                S+VP G+  A+  +      +             G             +     +
Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
             G  D  ++L               S  S +   G+ +   + +          +    
Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +          T  ++ ++ +  I       + + DL     +  +     +++ 
Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            GVN+ EE+S LI ++Q+Y  + +++     M+ TLL
Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630


>gi|325923280|ref|ZP_08184953.1| flagellar hook-associated protein FlgK [Xanthomonas gardneri ATCC
           19865]
 gi|325546207|gb|EGD17388.1| flagellar hook-associated protein FlgK [Xanthomonas gardneri ATCC
           19865]
          Length = 624

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 125/408 (30%), Gaps = 16/408 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLTNRVDSLYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNNGLTSSVDEVNRLTQQIAKIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I     +     D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTIGNSVDNASP--DLLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQALVVGTTAA 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G++  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVALQTQGQNVSLSANS--LGGQMGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +          +              +    ++ 
Sbjct: 296 VGMASTFNAGHAQGMDLYGAMGGNFFNIGSPTTAANPKNTGTAALSASFSNMSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                   W          +      S     + + V+ +        
Sbjct: 356 TLSFDGAAWKATRADTGAAVPITGTGSTGDPLVLNGVSLVVGGTPANG 403



 Score = 69.7 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/446 (8%), Positives = 112/446 (25%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 +  + + ++ D+     S  +G              +                 
Sbjct: 179 NGTIGNSVDNASPDLLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQALVVGTTAAK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T      + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LTTVADPYQPTKLQVALQTQGQNVSLSANSLGGQMGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S      ++   +  A+     +        + ++     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHAQGMDLYGAMGGNFFNIGSPTTAANPKNTGTAALSASFSNMSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              +            +      S       N + +      +N    + +        I
Sbjct: 359 FDGAAWKATRADTGAAVPITGTGSTGDPLVLNGVSLVVGGTPANGDKFLLQPTAGLAGSI 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             ++    +       +      +       + +       A         +        
Sbjct: 419 SVAITDPSRIAAATPVKATATLANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478

Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              P   +    +   G            +   +       +   ++     + D  A  
Sbjct: 479 GNGPFPYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLAKVEDAKALN 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      +       +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAADMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624


>gi|291534845|emb|CBL07957.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           M50/1]
          Length = 613

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 135/444 (30%), Gaps = 36/444 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM------------TTISPEN 49
           S       A +  +       +   NI N   K Y ++                      
Sbjct: 3   STFFGLTIASSGLSAYQVALNTSANNISNVQTKGYSKQQANRVASESIRAYAKYGSMGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VT  + +      +D     + S++G      ++    E    DD  +   +  ++ + +
Sbjct: 63  VTTESVKQLRNQYYDNKYWYNQSSVGLYETKLNYLKQIENYFIDDDSSKGFSTILNTMFN 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L++   N  +    +  I +A+     FN+ A  +  I+ +A++EI+  + N+     +
Sbjct: 123 DLDTLKNNAGDVNTRQQFIGSAQNFATFFNSVASGLGDIQNNANEEIKSTVQNINSIAEK 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218
           +  +N  I         A++  DQR +L+ ++SEI+          +             
Sbjct: 183 IASLNHQINVIEIQGGYANELRDQRALLIDELSEIVPTEAEELPVQNSNDPELPTGANYF 242

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKA 274
                G  L +T   +          V         D        S   G++   G +KA
Sbjct: 243 TVKIGGQVLVDTYDYETLKCVARENKVNQSDMDGLYDVKWEKTGNSFKAGASSMSGTLKA 302

Query: 275 LLQIRDSVVPIF---------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           L  IRD                  +  ++  +    +   P +G        +       
Sbjct: 303 LFDIRDGNNGENFTGEARVIDSKHVKVVSPSITDIEAMTVPESGTLTIYGKDYNYTNFTF 362

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
             +   +  S T  +        S   DG   S     +   +  Y   +N +  SF   
Sbjct: 363 ETDANGKITSYTFELEDALSQQQSNKVDGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSL 422

Query: 386 FIFDPVAGINTNVTLLEYARNSIG 409
           F    + G + +    +Y     G
Sbjct: 423 FNDIMLKGQDLDGNATDYYSFFTG 446



 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 +   +   +  TL                    +      +     S Q S   
Sbjct: 330 VSPSITDIEAMTVPESGTLTIYGKDYNYTNFTFETDANGKITSYTFELEDALSQQQSNKV 389

Query: 269 KGKIKALLQIRDS-VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            G   ++    D+  VP + +Q+++  R     F++      + +     + +       
Sbjct: 390 DGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSLFNDIMLKGQDLDGNATDYYSFFTGADQ 449

Query: 328 NKLCQGISETICVNPQYRSN----------PSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
               + +      N    ++           S +       K             +    
Sbjct: 450 VTGEEYVLGKSDKNHGNTTDCGASSYYKLTASNICVSSICVKDSSKLAAQYKADTEEGVD 509

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                           +        + +  I  +  +   S         +   +     
Sbjct: 510 KYKLVEDLAKLKSDTVLFRAGNASGFLKCMISDISIDTQQSTIFSNNYTNIQAALETQRM 569

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  GV+  EE   LIK + +YN+S+K+I    ++   L+E
Sbjct: 570 SVSGVDEDEEALDLIKFQNAYNLSSKMISVMAEVYDKLIE 609


>gi|209884510|ref|YP_002288367.1| flagellar hook-associated protein FlgK [Oligotropha carboxidovorans
           OM5]
 gi|209872706|gb|ACI92502.1| flagellar hook-associated protein FlgK [Oligotropha carboxidovorans
           OM5]
          Length = 624

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 146/445 (32%), Gaps = 18/445 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55
           M L      A +         A +  N+ N +   YVR+               V V   
Sbjct: 1   MGLTQALATAMSGLRANQAALALVASNVSNIETPGYVRKSLNQAQTTTGTGSSGVIVTGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             E      K +   +S       + +     + +  D   N +     + L  +L++ S
Sbjct: 61  NRELNVYVQKQVLTETSGASYATTMSNALQRLQGIYGDPGSNTTLEAAFNALTAALQALS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                     T ++ A+ + Q  N+++  +Q +RADA+  I+  +      + ++  +N+
Sbjct: 121 VTSDSPAARSTAVNAAQSLAQMLNSTSAGIQSLRADAESAIKSSVDAANNAMRQIATINN 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +   T     A   LDQRD  + ++S+++ I  +    N + V+T+ G  L  +    I
Sbjct: 181 QLLGTTGDDAAAASLLDQRDQYITQLSQLMDIRVLTNERNQVTVFTNSGVQLVGSEASTI 240

Query: 236 NFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           +F+   + T  +  N              F  G  +      ++  G I A L++RD  +
Sbjct: 241 SFDAQGTVTPNTAWNSDPSISTLGTLTLTFPHGGDIDLIATRSIRSGAIAANLELRDETL 300

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              Q Q+D++A  +  + S+K       +  P  F  D     +    Q        N  
Sbjct: 301 VQAQAQIDQLAAAMASALSDKVTPGTKDDGPPANFTLDLTGLQNGNKVQFSYTDTTTNTT 360

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                  + D   V         +       I+      +       + G          
Sbjct: 361 RTITLVRVDDPS-VGALSNTATNDPNDEVFGIDFSGGMASVVSQLTGLLGSRGLSFANPA 419

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVV 428
               +  +  +   +  +   S  +
Sbjct: 420 GPGDLLNISGDAGGATVVGSASSTI 444



 Score = 74.7 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 70/249 (28%), Gaps = 6/249 (2%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                +     E   I   G + S         G              +     D     
Sbjct: 376 LSNTATNDPNDEVFGIDFSGGMASVVSQLTGLLGSRGLSFANPAGPGDLLNISGDAGGAT 435

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           ++GS S    I   +   P L +                          S  + L    S
Sbjct: 436 VVGSASSTITIRDLAGGDPQLPLFVDNGVPYTGAITATGSQQTGLAARISVNNLLLADPS 495

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------VTLLEYARNSIGW 410
               +       AG    ++       +   +        +       T+L + +     
Sbjct: 496 RMVIYNTTPTTQAGDTTRVDFILSQLTQGSYYVSPQTGIGSSATPFKGTMLGFLQQFTTM 555

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
             +  + +  L     VV + +    + T GVN+ EE++ L+ ++ +Y+ + +++     
Sbjct: 556 QGQAAASAKQLADGQNVVLSTLQNKLNATSGVNIDEEMAHLLALQNAYSANARVMSTVKD 615

Query: 471 MLQTLLEGV 479
           M  +LL  +
Sbjct: 616 MFDSLLRSM 624


>gi|240145382|ref|ZP_04743983.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           L1-82]
 gi|257202503|gb|EEV00788.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           L1-82]
          Length = 613

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 135/444 (30%), Gaps = 36/444 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM------------TTISPEN 49
           S       A +  +       +   NI N   K Y ++                      
Sbjct: 3   STFFGLTIASSGLSAYQVALNTSANNISNVQTKGYSKQQANRVASESIRAYAKYGSMGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VT  + +      +D     + S++G      ++    E    DD  +   +  ++ + +
Sbjct: 63  VTTESVKQLRNQYYDNKYWYNQSSVGLYETKLNYLKQIENYFIDDDSSKGFSTILNTMFN 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L++   N  +    +  I +A+     FN+ A  +  I+ +A++EI+  + N+     +
Sbjct: 123 DLDTLKNNAGDVNTRQQFIGSAQNFATFFNSVASGLGDIQNNANEEIKSTVQNINSIAEK 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218
           +  +N  I         A++  DQR +L+ ++S+I+          +             
Sbjct: 183 IASLNHQINVIEIQGGYANELRDQRALLIDELSKIVPTEAEELPVQNSNDPELPTGANYF 242

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKA 274
                G  L +T   +          V         D        S   G++   G +KA
Sbjct: 243 TVKIGGQVLVDTYDYETLKCVARENKVNQSDMDGLYDVKWEKTGNSFKAGASSMSGTLKA 302

Query: 275 LLQIRDSVVPIF---------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           L  IRD                  +  ++  +    +   P +G        +       
Sbjct: 303 LFDIRDGNNGENFTGEARVIDSKHVKVVSPSITDIEAMTVPESGTLTIYGKDYNYTNFTF 362

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
             +   +  S T  +        S   DG   S     +   +  Y   +N +  SF   
Sbjct: 363 ETDANGKITSYTFELEDALSQQQSNKVDGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSL 422

Query: 386 FIFDPVAGINTNVTLLEYARNSIG 409
           F    + G + +    +Y     G
Sbjct: 423 FNDIMLKGQDLDGNATDYYSFFTG 446



 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 +   +   +  TL                    +      +     S Q S   
Sbjct: 330 VSPSITDIEAMTVPESGTLTIYGKDYNYTNFTFETDANGKITSYTFELEDALSQQQSNKV 389

Query: 269 KGKIKALLQIRDS-VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            G   ++    D+  VP + +Q+++  R     F++      + +     + +       
Sbjct: 390 DGMQASIGSSVDTMGVPYYMSQMNQFLRSFCSLFNDIMLKGQDLDGNATDYYSFFTGADQ 449

Query: 328 NKLCQGISETICVNPQYRSN----------PSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
               + +      N    ++           S +       K             +    
Sbjct: 450 VTGEEYVLGKSDKNHGNTTDCGASSYYKLTASNICVSSICVKDSSKLAAQYKADTEEGVD 509

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                           +        + +  I  +  +   S         +   +     
Sbjct: 510 KYKLVEDLAKLKSDTVLFRAGNASGFLKCMISDISIDTQQSTIFSNNYTNIQAALETQRM 569

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  GV+  EE   LIK + +YN+S+K+I    ++   L+E
Sbjct: 570 SVSGVDEDEEALDLIKFQNAYNLSSKMISVMAEVYDKLIE 609


>gi|85058017|ref|YP_453719.1| flagellar hook-associated protein 1 FlgK [Sodalis glossinidius str.
           'morsitans']
 gi|84778537|dbj|BAE73314.1| flagellar hook-associated protein 1 FlgK [Sodalis glossinidius str.
           'morsitans']
          Length = 556

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 130/365 (35%), Gaps = 14/365 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +L ++  A +      Q  + I  N+ NA N  Y R++ +   +             V V
Sbjct: 1   MLNLYYIASSGLQTGQQALSVIGNNLANATNPYYSRQNIILGAAGGRVTSTGHIGNGVRV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      ++ +    + +          +  ++  +    +N     ++ L ++L+
Sbjct: 61  EGVARAFDEYANERVRGTETLLRASSAHYDKMSSLDLEFSRT--DNGIDTKLNSLFNALK 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S          +     +E+   FN  + E+ K     +++I   ++N+ +   +L  
Sbjct: 119 DISTVPKNSNYRSSAFTALKELTGRFNKLSDELSKQEQKNNQDIRQSVNNINQLTGQLAS 178

Query: 173 VNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFET 230
           +N  I  + +     A+D LD+RD LLQ +S+  GI+T I      + V  S+G  L   
Sbjct: 179 LNREISNRQSIDGGGAYDLLDRRDALLQALSQQTGINTQIDSRTGAVNVTLSNGHMLVSG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      ++     +          +   Q S + KG +  LL   +  +P  +++L
Sbjct: 239 DKANALEVTTDNNNPGRQVIAYRDAENAIIPLQDSLLDKGVLGGLLAFHNQDLPEIRDRL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +E+A  L   F++ +    +     G  +            +   E         ++P  
Sbjct: 299 NELALHLSNRFNQVNKQGYDDNGKEGEDLFSYALPNSIANGRNQGEASLSVTGLNTDPDA 358

Query: 351 LRDGG 355
           +    
Sbjct: 359 VGGVA 363


>gi|95929857|ref|ZP_01312598.1| protein of unknown function DUF1078-like [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134153|gb|EAT15811.1| protein of unknown function DUF1078-like [Desulfuromonas
           acetoxidans DSM 684]
          Length = 548

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/556 (9%), Positives = 131/556 (23%), Gaps = 84/556 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M + +      +  N        +  NI N++   +    T+ +            + + 
Sbjct: 1   MGIQSSLFSGVSGLNANGNALTVLGNNIANSNTIGFKSSRTIFSDLLSAEIAGSGGASQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                  + +            S          F  + +         +           
Sbjct: 61  GRGAGLSTVDNIFSQGTFETTESNTDLAIEGPGFFMVSD-----PGEASIYYTRAGAFNF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  N     +    +++A E V +      E +              +NL      
Sbjct: 116 DETGTLVNPEGYAVQGYYLNDAGETVGDLTDLTIETRSFSPANPTTKISLATNLNANDPY 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR----NNNDMVVYTSDGT 225
           L    DA+     +             +   +     ++T        NN   V   +  
Sbjct: 176 LGTQGDAVSPFDVNDPADTSNYASSVRIFDSLGREHLVTTYFNKLDPENNPDGVMQWESH 235

Query: 226 T------------------------------LFETVPRDINFEKMNSYTVTSESNPIF-- 253
           T                              L +        +   +      +      
Sbjct: 236 TVVSESEVESPAKIAADDAALELAKATEVTALADLTAAQTALDADPTNAALIAARDAAQT 295

Query: 254 ----------------IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                            D V V  +  S    G++  +L + D++        + +    
Sbjct: 296 AYDAANAALQTAEIDAADWVEVGRSILSFDTGGRLVNVLDVSDTISDGPLPDSERVYDPD 355

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC-------------QGISETICVNPQY 344
              +   +    +    P     D                           + I    QY
Sbjct: 356 GNLYVTSNTTDPDGNYYPLTTDVDLKVPQPTASTVSGALSWINEAEDTQAVDIIFDATQY 415

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            S    +                +    +++ +Y +   +      +A  +  V L +  
Sbjct: 416 SSESDVISQTQDGYATGTLVSLTVDNDGNILGNYSNGEPRKLARIALAKFSNPVGLAKAG 475

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +   + S +  +      V   I  +      V+L +E   +I  ++ +  ++K+
Sbjct: 476 NNL--YEATDDSGTAIVGTVGSGV-GKIFTNSLEMSNVDLAQEFVKMITTQRGFQANSKI 532

Query: 465 IMFTDKMLQTLLEGVK 480
           I  TD++L  L+   +
Sbjct: 533 ITTTDELLGELINLKR 548


>gi|238919259|ref|YP_002932774.1| flagellar hook protein FlgE [Edwardsiella ictaluri 93-146]
 gi|238868828|gb|ACR68539.1| flagellar hook protein FlgE [Edwardsiella ictaluri 93-146]
          Length = 424

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 116/476 (24%), Gaps = 57/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS Q   I  NI N+    +               +       S +++ 
Sbjct: 2   GFSQAISGMNAASTQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKIGLGVKVASVDQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      + A+      Q F  ++          +       +     + +  N     
Sbjct: 62  KDGATTTTNRALDVAISGQGFFRMQ------APNGSVNYSRNGQFTKDAKGFLTNAQGLY 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L              +  +       +      +++    +    S    +   +     
Sbjct: 116 L------------TGYPAAGTPPTIQQGADPVPLQIPTGLMPAKASTEGTMVLNLNSADK 163

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +        D  +V     +  +     + N ++M +Y   G    E             
Sbjct: 164 AIDSTKLKFDPTNVNSYNYATSMTTYDSLGNVHNMNLYFVKGKP--EEKDITTGTPPKIE 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             + +  +   ID    S+   +      I AL    +  +      L            
Sbjct: 222 KVMATPWHIYSID----SAESPAPKTFTSIGALEFDSNGELLKGTAPL------------ 265

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                               +                   Q            +  K   
Sbjct: 266 ----------------TLKMVASNGALAQDFTLNFTGTRQQNTGKDGVSAKTQNGYKAGE 309

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A       L     N   W E  +S    + 
Sbjct: 310 LTGYQINDDGSITGSYTNQQKQLLGQIVMANFADPEGLTSEGNN--EWSESAKSGQPIIG 367

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    ++        V+L ++L  +I  +++Y  + + I   D++LQTL+  
Sbjct: 368 TSGTSGLGTLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVNL 423


>gi|126730121|ref|ZP_01745933.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37]
 gi|126709501|gb|EBA08555.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37]
          Length = 435

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/489 (10%), Positives = 128/489 (26%), Gaps = 63/489 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M++ +  N      +  + + A+I  NI N+  + Y R +T  +    +    T  +   
Sbjct: 1   MTISSSLNAGVAGLSANATRLATISDNIANSATQGYKRVETEFSAMVTSGNSGTYTAGGV 60

Query: 61  NMFDKVLH-------AHSSAIGQQRLLQSFEALKEM--MSADDHYNNSPTHYISKLRDSL 111
                 L          ++A         F  + +   + A +          +  R   
Sbjct: 61  RTQTNRLVAEHGALVTTNNATDLAVRGTGFLPVAQATEVLAGNGNPQMFMTTTASFRLDA 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E Y +  S  +L     +    +      ++  ++ I+   ++ +    + +   ++   
Sbjct: 121 EGYLRTESGLMLLGWRANADGSIPNLARDTSASLEPIQIALNQYLSEPTTAITMGVNLPA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
               A     A +     F +        ++    +     +N   +V T   +      
Sbjct: 181 TETTAGAAGDALELPIEYFDNLGRSESLNVTFTPTVPATGSSNEWTMVITDSASGGAIIG 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
              + F+   S   T  S    I           +V        +++    +        
Sbjct: 241 DYTVTFDNTPSAGGTLASVSAPISAGGAYDGVAGSVVVNAAGGPIELSIGQL-------- 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                                                        T     Q   + + L
Sbjct: 293 --------------------------------------------FTNNGLTQRSDSFAPL 308

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 S         +     +  ++    +      P+  +     ++        + 
Sbjct: 309 NIAKDGSPAGNMTSVEVDESGRVYAYFDTGASAVIFQIPLVDVPNPNGMIALNNQL--FQ 366

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S S  L          I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 367 PSAESGSFFLWDAGDGPTGEIVPYAREESTTDVAAELTDMIQTQRAYSSNAKVIQTVDEM 426

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 427 LQETTNIKR 435


>gi|240137460|ref|YP_002961931.1| putative flagellar hook-associated protein 1 FlgK [Methylobacterium
           extorquens AM1]
 gi|240007428|gb|ACS38654.1| putative flagellar hook-associated protein 1 FlgK [Methylobacterium
           extorquens AM1]
          Length = 632

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 142/453 (31%), Gaps = 20/453 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60
           L  F+ A         Q   + +NI N     YVRR      +      V   T      
Sbjct: 3   LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K L A SS      L+       + +       ++     +    SL++ + N + 
Sbjct: 63  AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                TV+  A ++     ++A  VQ +R+  + ++  +       L++L  +N  I   
Sbjct: 123 TAARATVLSAANDLATRIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232
            +      +  DQRD  L  +S +I I+ + +++  + V TS G TL +           
Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242

Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +  +    S +           G  +      A+  G I A +++RD+++P  Q
Sbjct: 243 RGTLSANALYATDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTMLPQAQ 302

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  L  + S++        +         +  L          T+ V     + 
Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +      +                +  +               +   +T       +
Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRNAITAALGGGYT 418

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +  +    + +  +           S S +   
Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451



 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                S+VP G+  A+  +      +             G             +     +
Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
             G  D  ++L               S  S +   G+ +   + +          +    
Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +          T  ++ ++ +  I       + + DL     +  +     +++ 
Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            GVN+ EE+S LI ++Q+Y  + +++     M+ TLL
Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630


>gi|254559638|ref|YP_003066733.1| flagellar hook-associated protein 1 FlgK [Methylobacterium
           extorquens DM4]
 gi|254266916|emb|CAX22715.1| putative flagellar hook-associated protein 1 FlgK [Methylobacterium
           extorquens DM4]
          Length = 632

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 143/453 (31%), Gaps = 20/453 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60
           L  F+ A         Q   + +NI N     YVRR      +      V   T      
Sbjct: 3   LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLAPITSGSGNAGVATGTVARALD 62

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K L A SS      L+       + +       ++     +    SL++ + N + 
Sbjct: 63  AAALKQLRAESSGAAYTSLMSKTRTQLDTLYGRPGDASALDGVFNNFTLSLQTLAANPTS 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                TV+  A ++     ++A  VQ +R+  + ++  +       L++L  +N  I   
Sbjct: 123 TAARATVLSAANDLAARIGSAANGVQALRSGLESQLATDTEKASGLLAQLAKLNTRIVAT 182

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232
            +      +  DQRD  L  +S +I I+ + +++  + V TS G TL +           
Sbjct: 183 ASGDASRPELEDQRDQALTSLSGLIDINAVPQSDGSVSVLTSSGVTLLDRSNAASLRFDA 242

Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +  +    S +           G  +      A+  G I A +++RD+V+P  Q
Sbjct: 243 RGTLSANALYASDPSQSGVGTIVASTPGGGKIDLLGSGAIRSGSIAAAIELRDTVLPQAQ 302

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  L  + S++        +         +  L          T+ V     + 
Sbjct: 303 RQLDDLAAGLSRAMSDRLATGTVPTDGTTGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +      +                +  +               + + +T       +
Sbjct: 359 RNLILMPSYQNPPPAIPAGATDDANATVIPFTIRRPDAVPARTADEVRSAITAALGGGYT 418

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +  +    + +  +           S S +   
Sbjct: 419 VSSVPGGEAGAMRILSSGGATLVAASASVTQVT 451



 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 1/217 (0%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                S+VP G+  A+  +      +             G             +     +
Sbjct: 415 GGYTVSSVPGGEAGAMRILSSGGATLVAASASVTQVTAAGDIKGSATQIPLFVDGASAAL 474

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
             G  D  ++L               S  S +   G+ +   + +          +    
Sbjct: 475 YTGSFDGGSQLTGFAQRIAVNPAVVGSAASLVGVTGTGAASGIGDGTRPQALFTALTS-T 533

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +          T  ++ ++ +  I       + + DL     +  +     +++ 
Sbjct: 534 QRLFSSSSGISGIDAPTRSSVADFVQGVISVQGAAAAAAQDLDEGQSIALSTAQGRFASA 593

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            GVN+ EE+S LI ++Q+Y  + +++     M+ TLL
Sbjct: 594 SGVNIDEEMSNLIALQQAYAANARVLTAARDMIDTLL 630


>gi|221636048|ref|YP_002523924.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159]
 gi|221157294|gb|ACM06412.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159]
          Length = 423

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/478 (9%), Positives = 117/478 (24%), Gaps = 55/478 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +           I  NI N +   +       T                 +
Sbjct: 1   MMRSMFSAISGLRAHQTWMDVIGNNIANVNTTGFKVGRVRFTD----------------I 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +++   S              L+  + A     ++               +   S+  
Sbjct: 45  LSQLVRGASGPT---ETRGGINPLQIGLGAVVGAVDTIHTQ------GALQLTGKPSDLA 95

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +         +  Q   T                 +  SN    L      N  +     
Sbjct: 96  IQGDGFFVVSDGSQTLYTRDGAFDI----GSDLRLVNPSNGFYVLGWQADANGNVDTAGP 151

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                     Q D +       +  +     +     +     ++ +++ +   F  +  
Sbjct: 152 VGPITIPIGQQLDAVPTT-QITVQGNLNANQDPAATPHFVTKVSITDSLGKRHEFYILFD 210

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T+  N    +    +++     P   +          +    +   ++A   I +  
Sbjct: 211 KVGTNTWNYTLQEDDPRTTSTTEDDPDFALGGTPS---GTLVFDADGNLDLAASNISAVD 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 G S        +   +                               + +    
Sbjct: 268 LDSTAGGASSITVTPDFSRLTQLAAPYSA--------------------NAAANGAPAGS 307

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                ++    ++  Y +   K      +A       L++   N   +L    S    + 
Sbjct: 308 LTTFTVSQSGQVLGIYSNGVTKVVGQIALALFTNPGGLMKVGGN--AYLPTVNSGEPIVG 365

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+  Y     V+L +E + +I  ++ +  ++++I  +D++LQ L+   +
Sbjct: 366 PADSGGRGKIASGYLEMSNVDLAQEFTSMIMAQRGFQANSRVITTSDEVLQELVNLRR 423


>gi|46578723|ref|YP_009531.1| flagella basal body rod domain-containing protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120603713|ref|YP_968113.1| hypothetical protein Dvul_2674 [Desulfovibrio vulgaris DP4]
 gi|46448135|gb|AAS94790.1| flagella basal body rod domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563942|gb|ABM29686.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris DP4]
 gi|311232595|gb|ADP85449.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1]
          Length = 498

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/500 (8%), Positives = 122/500 (24%), Gaps = 24/500 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPEN---VTVVT 54
           ++             ++    +  N+ N +   + +     +D M+   P     V+ ++
Sbjct: 1   MMHGLYTGATGMRTQAEGMNVVGNNLANVNTIGFKQSMMLYQDLMSQTEPTGSAYVSGIS 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           Q      + D  +     A+        F    +         ++        R + +  
Sbjct: 61  QVGLGARVGDVRVLRSQGALLAGSDTTDFAISGKGFFQVTSGQDTHYTRAGNFRFNKDGQ 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + +   L    I    E      T  ++     +   K      S       +    +
Sbjct: 121 LVDPNGFNLMGHAITGETEGPLAAVTLVKDADGRLSMPAKATGGMTSVFNLGFDKDASSS 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A  F    +                 ++ + +     + +++ +   + TT       +
Sbjct: 181 TANPFFGMLEAWDGTATPPLGDNAAGYTQTMRVYDAAGDTHELTIRFDNATTAGGKRYVE 240

Query: 235 INFEKMNSYTVTSESNPIFID-------GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                       + +                 S      +         +   + VP   
Sbjct: 241 FLVTMPPGEDGGAAAGSAGAGLLMSGTLQFGSSGQLQDIMAFTPSGGDPKDLANWVPATL 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN------ 341
           +           +      +  +       +           L   +             
Sbjct: 301 DASGRPQFNATFAQGGAQTVGLDLGITTTAWNNAPASAAGVGLDPTLLGGATTPKLAATS 360

Query: 342 -PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
              Y+ + S          + +     +A    +   Y +  +++    P+    +   L
Sbjct: 361 TTAYKGSSSSTYMKQDGYAEGVLMNLEVATDGIVSGKYSNGQSQSLFRVPIFRFTSEDGL 420

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                    +     S +          +  +         V++  E+  +I  ++ +  
Sbjct: 421 RS--EGMNHYSATTESGAAQEGKADTENYGKLMGKSLEQSNVDMAREMVNMIVTQRGFQT 478

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           ++K++   D M+Q  LE  +
Sbjct: 479 NSKVVTTADTMIQKALELKR 498


>gi|78047580|ref|YP_363755.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927969|ref|ZP_08189190.1| flagellar hook-associated protein FlgK [Xanthomonas perforans
           91-118]
 gi|78036010|emb|CAJ23701.1| flagellar hook-associated protein 1 (HAP1) [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325541654|gb|EGD13175.1| flagellar hook-associated protein FlgK [Xanthomonas perforans
           91-118]
          Length = 624

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTPERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   ++++  A D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLVTVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTTWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/446 (8%), Positives = 114/446 (25%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LVTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S      S+   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              +    +  +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTTWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             ++    +       +      +       + +       A         +        
Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478

Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              P   +    +   G            +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      +       +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTVFQAILGAVR 624


>gi|307131603|ref|YP_003883619.1| flagellar hook-associated protein flgK [Dickeya dadantii 3937]
 gi|306529132|gb|ADM99062.1| Flagellar hook-associated protein flgK [Dickeya dadantii 3937]
          Length = 640

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 159/437 (36%), Gaps = 15/437 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N   +  + A    +++  NI N     Y R++ +   +             VTV
Sbjct: 1   MSNLINTGMSGLSAAQAALSTVSNNISNQAVTGYSRQNALLAQNNGTNISAGYIGNGVTV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +  +   K L A  +         S  +  + + +    +   +  I     +L+
Sbjct: 61  VSINRDYNDFIAKQLRAAQTTSSSTTSYYSQISKIDNLLSSSSSSL--STTIQDFFKNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S+  + +TV+  AE +V  F  + + ++ + ++ + EI + ++ +  +  ++  
Sbjct: 119 NLTSNSSDSSVRQTVLGKAEALVNQFKIADQYLRDMDSNINGEISITVTQVNTYAKQIAD 178

Query: 173 VNDAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I       +    +D LDQRD L+  +++++G+   V++ +   V   +G TL + 
Sbjct: 179 INDQIVRLKGANNGAAPNDLLDQRDNLVNDLNKLVGVDVAVQDGDVYNVSLKNGLTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +          S  + S +  G +  LL  R S +   +NQL
Sbjct: 239 KSYNTLVATQSSTDPTRTTVSYNDAIAGASEVKESTITGGSLGGLLSFRTSTLDSARNQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +MA     +F+++     +  N  G         +  K  +  S T  +   Y S+   
Sbjct: 299 GQMALAFADAFNQQHKAGFDLNNAQGGDFFGVGSSVTLKSAKNTSAT-ELTSSYLSDTYS 357

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           ++  G+       +    A          D F  +      +G   +  +          
Sbjct: 358 MQYNGTSWSVTRSDGTTAASTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGQSAISQT 417

Query: 411 LEKNRSDSHDLHMKSQV 427
                + +  L      
Sbjct: 418 APTGSTSAASLTRNDTN 434



 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 84/347 (24%), Gaps = 4/347 (1%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
            ++ Q     A    +           +  +     S +T+ +      T          
Sbjct: 296 NQLGQMALAFADAFNQQHKAGFDLNNAQGGDFFGVGSSVTLKSAKNTSATELTSSYLSDT 355

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
                     S      T   +       T DG T+  +             +    +  
Sbjct: 356 YSMQYNGTSWSVTRSDGTTAASTLSGSALTFDGFTIDISGSAASGDTFSFKVSPGQSAIS 415

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
                   S+   +      IKA       V P   N             S     A + 
Sbjct: 416 QTAPTGSTSAASLTRNDTNYIKASDYSVKFVGPSANNWSVTRLSDGADLSSSATYTAASG 475

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                L       D+          T         + S      S       ++ +  G 
Sbjct: 476 STSASLIFDGMKLDISGTPAAKDLFTAKGVRDVIVDMSVKVTDSSKIAAAGVSLTSTGGG 535

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
                +     N          +    ++ +   + +G +    S +       + V + 
Sbjct: 536 VSDNTNAKALLNLQTTKV----VENKSSVSQAYASLVGDIGNKTSTAKVTDTSQKNVVSQ 591

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++    +  GVNL EE   L++ +Q Y  + K+I     +   LL  
Sbjct: 592 LTTEQQSVSGVNLDEEYGDLVRFQQYYMANAKVIQTASTIFDALLAI 638


>gi|47091667|ref|ZP_00229463.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes str. 4b H7858]
 gi|47019986|gb|EAL10723.1| flagellar hook-associated protein 1-related protein [Listeria
           monocytogenes str. 4b H7858]
          Length = 494

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/507 (14%), Positives = 154/507 (30%), Gaps = 54/507 (10%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVVTQRSENKN 61
            + A        +NI N +   Y+R+    T             +   V V   +     
Sbjct: 1   MSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVKVTDIKRLTNT 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                 +   +                 +      N  P+  +     +  + +KN  + 
Sbjct: 61  ALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQA 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                ++ +        N     ++++      + +  I +L   + +L  +N AI    
Sbjct: 120 TNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GN 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L              
Sbjct: 178 AGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS-- 235

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T T+      +DG  ++      +P+G I A +++  + +  +Q +++  +  L  + 
Sbjct: 236 --TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNSLAKAL 287

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------QYRSNPSFLRDG 354
            +      N        I D +K   N      +    +             +   +   
Sbjct: 288 DDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTIGGV 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----------------- 397
                    +          I  +  S  K  +   +     N                 
Sbjct: 348 DHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWILNPAITSNADNKPFLGVIAADIASLKTD 407

Query: 398 -----VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 T   +    I  +  + S S           N +SES S+  GVN+ EE++ ++
Sbjct: 408 KNIQGTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIM 467

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +  Y  + K +   + M++ LL  +
Sbjct: 468 QYQSYYVANTKAMNTVNDMMKALLAML 494


>gi|238916198|ref|YP_002929715.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC
           27750]
 gi|238871558|gb|ACR71268.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC
           27750]
          Length = 646

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 112/342 (32%), Gaps = 21/342 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------PE 48
           A           A     +   N+ N +   Y R+    + +                  
Sbjct: 6   AGLFIGTTGLKTAQTALNTTAHNLSNINTSGYTRQQVTFSDTQYVRVNTSDKVSSPDYGL 65

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   R       D+     +S +G            E     +    +   Y+  L 
Sbjct: 66  GVAVSEVRRIRDQFIDQAYRNENSRLGFYESQYKAIEEIEDQFG-EMQGVTYESYLINLY 124

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +S+   +KN +  +   ++I NA   ++      + ++  +   + +++  + ++ +   
Sbjct: 125 NSVNELAKNPTSTVARSSLIQNATAFIEKSENVYKGLKDYQTTLNTQVKNMVDSINKLGD 184

Query: 169 ELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           ++  +N  I    ++   DA+D  D+RD  + ++S+ I I+    ++ ++V+       +
Sbjct: 185 KIYTLNKKISKIESTGIEDANDLRDERDAAIDELSKYIDITYYENDSKEVVISAEGIPFI 244

Query: 228 FETVPRDINFEKMNSYTVTSESNPIF---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                  ++   +    +   + P +   +  +   ++      KG++K LL  R ++V 
Sbjct: 245 TMGELAKMDTRVVEGTNLVIPTWPGYERDVYDLSTEASNVDDTDKGELKGLLIARGNMVV 304

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            +    +  +       +     A            +     
Sbjct: 305 DYTVVPEAPSSSDYDMSTADGRAAYQEAYNKYYKAQEYYNTY 346



 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 70/261 (26%), Gaps = 3/261 (1%)

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
           +      DGT +   +    +  +   +           +G    S              
Sbjct: 383 NNPYMAPDGTEIQADIYTYNSVSQQVLFDRYGREVTGTDNGDGTYSFSSGEKLYMSFGGA 442

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
               DS      +         +           + +                 +   ++
Sbjct: 443 EVPVDSYTYSMLDMDKTGYG--MDDDKTVGTELFSRKGTDRYIKTTDDSGKTIYIRNNLN 500

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
           ET   +     N     +      K   +        D      D++++ F         
Sbjct: 501 ETDYESLYKLGNLQINPEAAQNVGKIPLSTVQGKEDFDRAKELVDAWDEKFASLNPDTYA 560

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            +   + +  N IG          +       + +        + GV+  EEL  +IK +
Sbjct: 561 KSD-FMTFYNNFIGEYATLGKALGNYVSNQTTMVDGYDNQRLQSEGVSSDEELEKMIKYQ 619

Query: 456 QSYNISNKLIMFTDKMLQTLL 476
           Q+YN +++ +   ++ML+ L+
Sbjct: 620 QAYNAASRYVNVVNQMLEHLV 640


>gi|160880840|ref|YP_001559808.1| hypothetical protein Cphy_2708 [Clostridium phytofermentans ISDg]
 gi|160429506|gb|ABX43069.1| protein of unknown function DUF1078 domain protein [Clostridium
           phytofermentans ISDg]
          Length = 479

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/494 (7%), Positives = 106/494 (21%), Gaps = 31/494 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46
           ++       +       +   I  NI N +   +       +                  
Sbjct: 1   MMRSLYSGVSGLRVHQTKMDVIGNNISNVNTVGFKASSATFSDILYQTTKSASGPNPNTG 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                 +                 +    +           +     ++   +       
Sbjct: 61  TAGTNAMQIGLGANLASITASITKTGGSQRTDNPFDLMIEGDGFFVVNNGVGNFFTKAGS 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                       +   +        +       + +        +     E         
Sbjct: 121 FNVDAAGTLCTPTGATVMGWQPSREDPRKTVPGSVSPLRIMSPENLYSAPEATTDIYLHG 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             +    N                    D L    +  + I     + +D  V   +   
Sbjct: 181 NIDSMDTNLTSSTGRIVNMSF------FDNLGNSYTAEVKIKQSEDSKSDYKVTIQNIYD 234

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
                         ++  +T E++ I        +   +    G I+      D      
Sbjct: 235 KKGDSIFAKKVVDPDTGDITYEASNITDFNFGNGTGSVTVNDDGTIEVDCDEIDLKFNGA 294

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                 +      + S K  +  + +    + I      + N       E+        +
Sbjct: 295 NGNFVSVGDDADNATSIKFKVNADPDPFKDVNIDFSSITMYNNSGTTTVESTKGAKADGT 354

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                   G+       +  ++     +   Y +   K      VA  +    L     N
Sbjct: 355 --------GAGKAAGNMSGISIDQQGMIFGTYDNGDRKLLGQVVVATFSNPAGLEAIGNN 406

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
                  +   +      +                V+L ++ + +I  ++ +  ++++I 
Sbjct: 407 MFSATPNSGEFNGVGEDITSSG-GKFITGVLEMSNVDLSQQFTEMITTQRGFQANSRIIT 465

Query: 467 FTDKMLQTLLEGVK 480
            +D +L+ L+   +
Sbjct: 466 TSDTLLEELINLKR 479


>gi|300870953|ref|YP_003785824.1| flagellar hook associated protein FlgK [Brachyspira pilosicoli
           95/1000]
 gi|300688652|gb|ADK31323.1| flagellar hook associated protein, FlgK [Brachyspira pilosicoli
           95/1000]
          Length = 637

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 134/400 (33%), Gaps = 28/400 (7%)

Query: 1   MSLLAVFNK--AQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------- 43
           MS  + F     +    N          NI N   K Y R+  +                
Sbjct: 1   MSTSSFFGIELGKRSLQNFKTALEVTGHNINNVATKGYSRQRVVMRTFDKPLEEPSLNRA 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                  +   + T         D  +     + G  +   ++    E +  ++  + + 
Sbjct: 61  ERAGQIGQGAEITTIERLRDKFIDSKIMVELGSDGYWKTKNNYLQQLEAIY-NEPGDYNL 119

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
            + +    D+ +  S N +E     T+++ A+ +  +FN    ++  +R + +  +E ++
Sbjct: 120 RNDLDAFWDAWQEMSVNPAERGTRMTLVERADRINNSFNQMYNQMDSMRNNLNSLVENKV 179

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           + +    + +  +N AI  + A     +D LD+RD+LL ++S +  +     + ++ ++Y
Sbjct: 180 NRINDIANSIRSLNTAIVKQEALGQSPNDLLDKRDLLLDELSSLANVDIKSIDPDETMIY 239

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
               + +   V   ++ E+       S  N    D    + +    +  G++KALL++RD
Sbjct: 240 IGSRSLIQGNVVNKLSLER-------SALNEGMFDVYWENDHVQLNLDGGELKALLELRD 292

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                  N LD +A  L  S +E            G+      K   + +          
Sbjct: 293 VDTVDAINDLDTLAMNLADSVNEIHRSGFGLNQETGVDFFTMNKQTPSVIGNYDLNNDGT 352

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                       +   ++     +   + G          
Sbjct: 353 EDSTIMFKVSGVNSVDINASIGSSGTLVFGSKTREGADVA 392



 Score = 99.7 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 97/336 (28%), Gaps = 6/336 (1%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDA--IKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
            D D        ++         +N    + F T +K       +            I  
Sbjct: 300 NDLDTLAMNLADSVNEIHRSGFGLNQETGVDFFTMNKQTPSVIGNYDLNNDGTEDSTIMF 359

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
                N+ D+        TL          +    YT   +   +        +N  + +
Sbjct: 360 KVSGVNSVDINASIGSSGTLVFGSKTREGADVAIDYTAQMKVGELIDKINSSDANVSAYL 419

Query: 268 PKGKIKALLQ--IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                  L      D + P +  +  E +   +   S     +G +            + 
Sbjct: 420 DDNNRLVLKAKGFDDYIKPSYFIKHIEDSGDFLVGISGLLNQSGANGAYNWQTTNQVNQL 479

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP--DLINHYCDSFN 383
             +     ++           N     D   ++     +          + +    ++  
Sbjct: 480 AGDFRNFTVTPEKHPAAAISVNDIIRNDINYIAASKGIDTTGNGFNDKWNGVGDGSNALA 539

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              + +    +++  T  ++   SI  +      ++    K  +V  ++ +   +  GVN
Sbjct: 540 IANLKNKEIMVDSKSTFNDFYTGSISQIASRTETANSESEKQTIVMEYLEKLRQSVSGVN 599

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L EE++ +   +  YN S +++   D++L  ++  +
Sbjct: 600 LDEEVAQMAMYQHGYNASARVVSVMDQLLDVVINRM 635


>gi|163781856|ref|ZP_02176856.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883076|gb|EDP76580.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1]
          Length = 494

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/501 (11%), Positives = 131/501 (26%), Gaps = 30/501 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSE 58
           +L  F  A    + +         N+ N +   +     +     +     + VVT   +
Sbjct: 1   MLRSFFNAVTGMDASRFWIDVTSDNLSNVNTVAFKAHRPLFQDVISSVTIGLNVVTGTIK 60

Query: 59  NKNMFDKVLHAHSSAI------GQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDS 110
           +      V+   +  +       Q  +          +    D     +      + R S
Sbjct: 61  STTYGAGVVVDSTQKLWNIGNFKQTGVNTDLAIQGRGLFILKDPITGANLYTRDGQFRLS 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEV-VQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            + Y        L    ++ A EV          E Q       +   L+ +NL      
Sbjct: 121 RDGYMVTSGGFYLQGFRLNEAGEVVGTGLENIHVEQQLQPRPTGQMSFLQPTNLNAEAIP 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            TV  D     + +        D      Q        ST       +  Y  DG     
Sbjct: 181 PTVAFDPTNTTSYNYKYTITIYDSLGNEYQADVYFKKASTNEWRVFVLSDYDGDGNLENL 240

Query: 230 TVP-RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ---IRDSVVPI 285
                   FE+  +   T     +  D      ++        +         ++     
Sbjct: 241 ISNGYRAGFEQSGTPLKTYNYQTLIFDPATGKIDEDDTQTANPLAFNRVPLGNKNYFFLQ 300

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD------NKLCQGISETIC 339
             +  +  + V  G+    D  +G +       +      +                   
Sbjct: 301 MFDDTNRPSDVTTGATQTLDTSSGGTLGSAVEGLTTTPGMIFSIGDELTSDTDTNLIQNS 360

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              Q+ S+     +    +K  L +V  L+    ++  Y +  +       VA       
Sbjct: 361 YANQFASDFVITLEQNGYTKGDLIDVYVLSEDGSVVGVYSNGKSLPLYRVAVAVFTDPEE 420

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +   N    +           +        +         V++ +E   LI  +++Y 
Sbjct: 421 LTKKGANLYTSITTPT-------ILLAGGSEKVRSGMLEMSNVDIAKEFINLITAQRAYQ 473

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            + ++I  ++ +L   +  V+
Sbjct: 474 ANARVITTSNTILDETVNLVR 494


>gi|190890382|ref|YP_001976924.1| flagellar hook protein [Rhizobium etli CIAT 652]
 gi|190695661|gb|ACE89746.1| flagellar hook protein [Rhizobium etli CIAT 652]
          Length = 433

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/481 (10%), Positives = 114/481 (23%), Gaps = 49/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    I             +                        E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +  D    I       +  L     +  A   
Sbjct: 121 GFQLMGYSYDSGSPAVVVNGFDGLVPVNVSQDGLTAIASTSGVFKGNLDSNAKIPVAPAT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++         ++  ++        +          V               ++   +
Sbjct: 181 LPSANLATTTTDTKKVSMVAYDRLGNKVMYDFYFTKQSVAAAPPPAPPATAATWEVAMYR 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +      ++  +  G  V +   +    GK+ +   +  +     Q+           
Sbjct: 241 NANAATGGTTSFPYTAGGAVGTGSLTFDANGKMTSSGAVTINDGVTGQS----------- 289

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                             I+       Q  ++ S        + 
Sbjct: 290 ----------------------------------IAMDFSGLTQLGADFSGTGTPNGQAA 315

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 316 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 373 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 432

Query: 480 K 480
           +
Sbjct: 433 R 433


>gi|261344142|ref|ZP_05971786.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541]
 gi|282567734|gb|EFB73269.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541]
          Length = 422

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/476 (12%), Positives = 123/476 (25%), Gaps = 59/476 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS    SI  NI N+    +    T          V       +  +N 
Sbjct: 2   SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +     A         F  +++         +       + +        N    +
Sbjct: 62  KDGPITRTDRATDVAISGNGFFRVEDQ------NGDVFYSRDGQFQRDKSGNLVNNQGMV 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                 +   V          + +    +    SEL  +   +  +  
Sbjct: 116 VTGYPAS---------VDAKGNVSIQSGGVPAGMNIPTDMMDAKKSELAKLTINLNSEDK 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K  A D  +  D+     S  +       N +++ VY   G      V      E   +
Sbjct: 167 IKEKAFDVNNPDDIATYNFSTTMTSYDSQGNTHEISVYFVKGANNEWKVYAKDANETKAT 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                                                   +   +   D    V++    
Sbjct: 227 Q---------------------------------------LINTEEPTDPADPVIVHDRL 247

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D           +F  D              +      Q  S  S      +      
Sbjct: 248 VFDGNGRLQAPTDAIFDFDYKGLNGANDGVLKIDLNKTRQQKVSESSVSAIDVNGYPAGE 307

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++ +Y +   +      ++       L+    N   W   N S +    
Sbjct: 308 YTTFKIEDNGLVVANYSNQQKRVVGQIALSAFANPNGLVSQGGNV--WASSNASGNPMDG 365

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++     +  V++ +EL  +I ++++Y  + + I   D+MLQTL+  
Sbjct: 366 VPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNL 421


>gi|241203124|ref|YP_002974220.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857014|gb|ACS54681.1| protein of unknown function DUF1078 domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 432

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/481 (10%), Positives = 109/481 (22%), Gaps = 50/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    I             +                        E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSSTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +L     D+    V            +  D    I       +  L     +      
Sbjct: 121 GFMLMGYSYDSGSPAVVVNGFDGLVPVNVNQDGLTAIASTSGIFKGNLDSNAKIAPVAPA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S + A    D +                                 ++ +   + ++ 
Sbjct: 181 TLPSANLATTTTDTK---------------------------KVSMVAYDRLGNKVMYDF 213

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +        P                    +        S                  
Sbjct: 214 YFTKKTVVTPPPATPATAATWEVSMFRNADAAVGGTTSFPYSTA---------------- 257

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                     + +    L     +  +D    Q I+       Q  ++ S        + 
Sbjct: 258 ---SVGTGTLSFDANGKLTAGGAVNIVDPVTGQTIAMDFSAFTQLGADFSGTGTPNGQAA 314

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 315 TPVKDVT-VDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 371

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 372 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 431

Query: 480 K 480
           +
Sbjct: 432 R 432


>gi|212709492|ref|ZP_03317620.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM
           30120]
 gi|212687830|gb|EEB47358.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM
           30120]
          Length = 422

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 132/476 (27%), Gaps = 59/476 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS    SI  NI N+    +    T          V       +  +N 
Sbjct: 2   SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +     A         F  +++         +       +          N    +
Sbjct: 62  KDGPITRTDRATDVAISGNGFFRVQDQ------NGDVYYSRDGQFLRDKSGNLVNNQGMV 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        ++           V          + +    +    S+L  +   +  +  
Sbjct: 116 VTGYPASVDDK---------GNVTVQSGGVPGGMNIPTDMMDAKQSDLAKLTINLNSEDK 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K  A D  +  D+     S  +       N +++ VY      + +   +     K  S
Sbjct: 167 VKAKAFDPNNPDDIATYNFSTTMTAYDSQGNTHEISVYF-----VKKDDNKWEVHAKDAS 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            TV  +   +  DG                                    M   ++   +
Sbjct: 222 ETVAKKLGELEFDGNG--------------------------------KLMTEKVVKGPN 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             DP           F   G+   ++   +             S+ S +    +      
Sbjct: 250 PGDPDTTVQLPTTFDFPFKGLNGANDGTLKVDLGKTRQQKVSESSVSAIDV--NGYPAGE 307

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++ +Y +   +      ++       L+    N   W   N S +    
Sbjct: 308 YTTFKIEDNGLIVANYSNQQKRVVGQIALSAFANPNGLVSQGGNV--WAASNASGNPMDG 365

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++     +  V++ +EL  +I ++++Y  + + I   D+MLQTL+  
Sbjct: 366 VPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNL 421


>gi|86750925|ref|YP_487421.1| flagellar hook-associated protein [Rhodopseudomonas palustris HaA2]
 gi|86573953|gb|ABD08510.1| Flagellar hook-associated protein [Rhodopseudomonas palustris HaA2]
          Length = 623

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 149/427 (34%), Gaps = 20/427 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL    + A           + +  N+ NA+   YVR+      +        V++   
Sbjct: 1   MSLGDALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTVNQVTTLSGPSGSGVSITGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             E        L   +S      L   F    + +  D + N +     + L  + ++ +
Sbjct: 61  NRELDAYLQAQLRTETSGASYASLRSDFLQQLQGLFGDPNSNGTLEDAFNGLTAATQALA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         V++ A+ V    N+ +  +Q +R  A+  +   ++     L ++  +N+
Sbjct: 121 TSPDSTSARIGVLNAAQVVSGVLNSMSNGIQTLRTGAETGLTDAVNTANNLLQQIASINN 180

Query: 176 AIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            I+   A            LDQRD  + ++++++ I  +   +N + V+T  G  L    
Sbjct: 181 NIRTNPAGGTSTDAATASLLDQRDAAINQLAQLMDIRVVTDASNQVTVFTGSGMQLVGMQ 240

Query: 232 PRDINFEKMNSYTVTSESNPIF----------IDGVVVSSNQGSAVPKGKIKALLQIRDS 281
              ++F+   + T ++  NP            +     +++  +++  GK+ A +++RD+
Sbjct: 241 AAQLSFDAQGTVTPSTTWNPNTSASELGSVRIVYPDGSTADLTNSLKSGKMAAYVELRDN 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +   Q QLD+ A  +  + S+K      + +         + D+       I+ T    
Sbjct: 301 TLVQAQTQLDQFAAAMASALSDKTTAGTPATSGAQTGFDLDLTDMKAGNTVNITYTDTTT 360

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
              R+  S +R     +               +   +  +          A    N+   
Sbjct: 361 GAQRT-VSVMRVDDPTALPLPQTATLNPNDYVVGIDFSGASGSVTAQLNAALNARNLQFT 419

Query: 402 EYARNSI 408
             + N  
Sbjct: 420 GTSPNIT 426



 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/436 (10%), Positives = 105/436 (24%), Gaps = 8/436 (1%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             T              A  + + Q   ++        ++             +      
Sbjct: 188 GGTSTDAATASLLDQRDAAINQLAQLMDIRVVTDASNQVTVFTGSGMQLVGMQAAQLSFD 247

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              +   S      T       V   +   +         + K            +   T
Sbjct: 248 AQGTVTPSTTWNPNTSASELGSVRIVYPDGSTADLTNSLKSGKMAAYVELRDNTLVQAQT 307

Query: 172 VVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            ++       +  S                   ++  +      N      T+       
Sbjct: 308 QLDQFAAAMASALSDKTTAGTPATSGAQTGFDLDLTDMKAGNTVNITYTDTTTGAQRTVS 367

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +  D         T T   N   +      ++               ++ +        
Sbjct: 368 VMRVDDPTALPLPQTATLNPNDYVVGIDFSGASGSVTAQLNAALNARNLQFTGTSPNITV 427

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L+      + S S    +   +     + +             G    +    Q  S   
Sbjct: 428 LNNPGFSTVNSASVTSTVTSLTGGSAEVPLFTDAGSPYTGAISGNGTQMTGLAQRISVNP 487

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT------NVTLLEY 403
            L    S    +       AG     +        +                 N TL  +
Sbjct: 488 ALVTDPSRLVVYSTTPPTAAGDTTRPDFITKQLTSSKYLYSATTGIGSNAAPYNGTLESF 547

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +  +     N   +  L     VV N + + Y+   GVN+ EE++ L+ ++ +Y+ + +
Sbjct: 548 LQQFVSQQGSNAQAATQLASGQSVVLNTLQQKYATNSGVNMDEEMAHLLSLQNAYSANAR 607

Query: 464 LIMFTDKMLQTLLEGV 479
           ++   ++M QTL++ +
Sbjct: 608 VMSTVNQMYQTLMQAM 623


>gi|78224295|ref|YP_386042.1| hypothetical protein Gmet_3103 [Geobacter metallireducens GS-15]
 gi|78195550|gb|ABB33317.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 419

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/481 (9%), Positives = 102/481 (21%), Gaps = 63/481 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+ +      +  N   +  + I  NI N +   + +   + +    +      +    
Sbjct: 1   MSVTSALYTGISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQIGRG 60

Query: 61  NMFDK-VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                        +              +      + N              +    N  
Sbjct: 61  VQIQTVENQFTQGSFESTESGTDLAVQGDSFFVVQNDNGRYYTRAGAFTFDKDKTLVNPE 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +    I  +  +                                          I  
Sbjct: 121 GYQVQGYGIIPSSGLADGVM-----------------------------------KPIDL 145

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T +            VL    ++          N       S   +++++         
Sbjct: 146 TTFATTPPKQTSAVDMVLNLDSTQSTPALPWNPANPVATSNFSTSLSVYDSQGNAHTATV 205

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
               T  +  +   I     +   GS+     +   L    +     Q  L   A+ +  
Sbjct: 206 YFRKTAANAWDWHAILPDAQAGTPGSSTTP--LDGTLTFDATGALTGQTPLASAAQNIT- 262

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                     +           +    QY S             
Sbjct: 263 ----------------------FTGGVTAPQPILFGMGVGATTQYASPSIVSSQTQDGYY 300

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +       +     +   Y +   K      +A   +   L +         E   S   
Sbjct: 301 QGTLTKVTIDDKGYVNGVYSNGELKKLYQVALAKFASTTGLSKAGGTLFE--ETLDSGQP 358

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                S      +  +      V++  +   +I  ++ Y+ ++K I   D+MLQ +L   
Sbjct: 359 LFSNASTPGVGKVLANSLEQSNVDMAAQFVKMITTQRGYSANSKTITTADEMLQEVLNLK 418

Query: 480 K 480
           +
Sbjct: 419 R 419


>gi|254445148|ref|ZP_05058624.1| conserved domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259456|gb|EDY83764.1| conserved domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 510

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/516 (8%), Positives = 122/516 (23%), Gaps = 47/516 (9%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYV-------------------------R 38
               +   +  N+ S+    I  NI N +  ++                          R
Sbjct: 3   FGALSSGISALNSFSKGMEVIGNNIANVNTVSFKSSRIKYSETFNQVLKQSAPSPSSGDR 62

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
            +   +     V V              L + +         + F  +++      +  +
Sbjct: 63  SNVQASQVGLGVQVEGI---VGQFHQGGLSSTNQLTDLAISGEGFFLVED----PKNATS 115

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    R     +        +      +    V        +        +  I  
Sbjct: 116 QFATRGGDFRIDDRGFLVTSGGMRVQGLTGGSIGFEVDVGEDGKWQFVPNEDTQNGTIAP 175

Query: 159 EISNLRRFLSELTV---VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           E     R   +      VN      T +++      D         + +  I T   N  
Sbjct: 176 ESYGDIRLDYDKGDAEVVNSKHTSGTLARNSVMFTNDLVGRDASGNAVLGSIPTPDGNGV 235

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKG 270
                   G            F   +    T     +  +    + V       +   +G
Sbjct: 236 IDTDSVVYGDASNPHRVGSFVFSTNSDGDATGVEGVTGWHAFMEEAVANLKTLRNVSNEG 295

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            +  ++   +    +  +    M    I + +  +      + +          +  ++ 
Sbjct: 296 SLTGVVTDAEIEQAVSSDFFYAMFGADIDAAANINMDGTAVQQLMIGNGDLTWNNTIDEQ 355

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               +             S +    +       +  ++     ++    +  +       
Sbjct: 356 ATVTAIMESFPGSLTEAESLISAVRADKT-PELSRFSIDDQGSIVYFLNNGDSFERGQIQ 414

Query: 391 VAGINTNVTLLEYARNSIGWLE------KNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
           +   N    L+   +N                +   L +        I +       V+L
Sbjct: 415 LIDFNDKTALIREGQNLYSSFGAAGVKESQNGNIDGLQVAGTNGLGSIQQGALELSNVDL 474

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             E + +I  ++ +   +++I  +D +LQ ++   +
Sbjct: 475 TNEFANMITTQRGFQAGSRIITVSDDILQEVVNLKR 510


>gi|294140191|ref|YP_003556169.1| flagellar hook-associated protein FlgK [Shewanella violacea DSS12]
 gi|293326660|dbj|BAJ01391.1| flagellar hook-associated protein FlgK, putative [Shewanella
           violacea DSS12]
          Length = 638

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/472 (12%), Positives = 132/472 (27%), Gaps = 37/472 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+  + N A+     +  Q A    NI NA+ + Y R+    +                
Sbjct: 1   MSM-DLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLESQRFGDSFYGAGT 59

Query: 51  TVVTQRSENKNMFDKVLH-AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            +   +        + L    +   G Q        L ++ S       S    ++    
Sbjct: 60  YISDVKRIYNEYAARELRIGQTGVSGAQTTQTKMSELDQLFSQI---GKSIPQGLNDFFA 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L S +    +  +  TV+ +A ++  + N   + +       + +I      +     E
Sbjct: 117 GLNSLADLPDDMGIRGTVLGSAGQLADSLNQMQKHLDGQMKQTNDQIAGITDRINEISKE 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L +VN  +             LD++D L+Q++S+   ++ I  +     +       L  
Sbjct: 177 LGLVNQELMKSQGEDSQ---LLDKQDALIQELSQYAQVNVIPLDTGAKSIMLGGAVMLVS 233

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                                   +       +       G++ AL   RD  +   + +
Sbjct: 234 GEIAMSLDTTAGDPHPGELRVVANVGVQSHVIDPIKM--GGQLGALFTFRDETLIPSELE 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-----------DNKLCQGISETI 338
           L +++  +  +F++ +    +     G  I   I D             N     +   I
Sbjct: 292 LGQLSLGVADAFNQANAQGFDLNGEMGQNIFKDINDPSMTIGRVGEFGSNAGSANLRVNI 351

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   N   L+     + +    V        L     D  N   +      +    
Sbjct: 352 DDVGLLSGNSFELKYTAPATYELKDTVTGTITPLTLNGTQLDGANGFTVHIDSGILADGD 411

Query: 399 TL----LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                    A   I  +  +           ++  +  +   +    V++ +
Sbjct: 412 KFEIRPSSGAAAGISVMMTDGKG--IAAAAPKITSDAANSGNTQVEMVSIDD 461



 Score =  100 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/410 (9%), Positives = 100/410 (24%), Gaps = 18/410 (4%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +M        S                 N+         I    ++   F      +   
Sbjct: 229 VMLVSGEIAMSLDTTAGDPHPGELRVVANVGVQSHVIDPIKMGGQLGALFTFRDETLIPS 288

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             +  +          +  ++   +N  +        +       R       +    + 
Sbjct: 289 ELELGQLSLGVADAFNQANAQGFDLNGEMGQNIFKDINDPSMTIGRVGEFGSNAGSANLR 348

Query: 209 TIVRN-----NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
             + +      N   +  +   T             +       +    F   +      
Sbjct: 349 VNIDDVGLLSGNSFELKYTAPATYELKDTVTGTITPLTLNGTQLDGANGFTVHIDSGILA 408

Query: 264 GSA-----VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
                      G    +  +      I        +       ++ + ++ +        
Sbjct: 409 DGDKFEIRPSSGAAAGISVMMTDGKGIAAAAPKITSDAANSGNTQVEMVSIDDRTDINFP 468

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD----- 373
           +       +      + E   VN      P+        +  F ++V   AG  D     
Sbjct: 469 VTGSELTFEINTTTSMFEVFDVNGTSLGAPAAYTPPLISAHGFTFDVATTAGATDRFTFD 528

Query: 374 ---LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                    ++     + +         TL +    +   +      +      +Q V+ 
Sbjct: 529 LSFGPGDNTNAVTMAKLSEAKLMNAGGSTLADVYEGTKLSVGGKAKAAEIAVGTAQSVYQ 588

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  +  GVNL EE + L++ +Q+Y  S +++   +++ +TL   V+
Sbjct: 589 QAYTRVQSESGVNLDEEAANLMRFQQAYQASARIMTTANEIFETLFNAVR 638


>gi|218674739|ref|ZP_03524408.1| flagellar hook protein FlgE [Rhizobium etli GR56]
          Length = 433

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/481 (10%), Positives = 117/481 (24%), Gaps = 49/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTSGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +        + +         +   E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNSA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +  D    I       +  L     +  A   
Sbjct: 121 GFQLMGYSYDSGSPAVVVNGFDGLVPVNVNQDGLTAIASTSGVFKGNLDSNAKIPVAPAT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++         ++  ++        +          V               ++   +
Sbjct: 181 LPSANAATTTTDTKKVSMVAYDRLGNKVMYDFYFTKQSVAAAPPPAPPATAATWEVAMFR 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +  V   ++  +  G  V +   +    GK+ +   +                     
Sbjct: 241 NANAAVGGTTSFPYSVGGAVGTGTLTFDSNGKMTSSGAVN-------------------- 280

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                      D    Q I+       Q  ++ S        + 
Sbjct: 281 -------------------------ITDGVTGQTIAMNFSGLTQLGADFSGTGTPNGQAA 315

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 316 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 373 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 432

Query: 480 K 480
           +
Sbjct: 433 R 433


>gi|91976147|ref|YP_568806.1| flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB5]
 gi|91682603|gb|ABE38905.1| Flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB5]
          Length = 623

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 141/415 (33%), Gaps = 19/415 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M L    + A           + +  N+ NA+   YVR+      +        V+++  
Sbjct: 1   MGLGDALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTVDQITTTAGPSGSGVSIIGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             E        L   +S      L   F    + +  + +   +  +  + L  ++++  
Sbjct: 61  NRELDAYLQSQLRTETSGASYALLRSDFLKQLQGLYGNPNSTGTLENAFNSLTAAVQALG 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         V++ A  V    N ++  +Q +R+ A+  +   ++     L  +  +N+
Sbjct: 121 TSPDSTSARIGVLNAARVVAGGLNATSNGIQSLRSGAETGLADSVNTANNLLQRIASINN 180

Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            I+   A            LDQRD  + ++S+++ I  +   +N   V+T  G  L    
Sbjct: 181 NIRTNPAGGTSTDVATASLLDQRDAAISQLSQLMDIRVVTDGSNRATVFTGSGMQLVGMQ 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDG----------VVVSSNQGSAVPKGKIKALLQIRDS 281
              ++F+   + T ++  +                   + +  S++  G I A +++RD 
Sbjct: 241 AAKLSFDAQGTVTPSTTWSSNSATSQLGSVKITYADGGTIDLTSSLKSGTIAAYIELRDK 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +   Q QLD+ A  +  + S+K      + +      A  + ++       IS T    
Sbjct: 301 TLVQAQTQLDQFAASMASALSDKTTAGTPATSGAQAGFALDLTNMKPGNTFNISYTDTTT 360

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
              R+      D  SV         +   Y   I+    S +     +       
Sbjct: 361 GAQRTVSVMRVDDPSVLPLPQTATLDPNDYAVGIDFSGASGSITAQLNAALNAKN 415



 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 111/380 (29%), Gaps = 14/380 (3%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S +    +   T   +     Q  +           D    ++         L + T+V
Sbjct: 244 LSFDAQGTVTPSTTWSSNSATSQLGSVKITYADGGTIDLTSSLKSGTIAAYIELRDKTLV 303

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISE-IIGISTIVRNNNDMVVYTSDGTTLFETVP 232
               +    +   A    D+        S    G +  + N      +    T       
Sbjct: 304 QAQTQLDQFAASMASALSDKTTAGTPATSGAQAGFALDLTNMKPGNTFNISYTDTTTGAQ 363

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA-------LLQIRDSVVPI 285
           R ++  +++  +V        +D    +     +   G I A          +  +    
Sbjct: 364 RTVSVMRVDDPSVLPLPQTATLDPNDYAVGIDFSGASGSITAQLNAALNAKNLEFTGTSP 423

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               L+      + + S        +     + +          +  G    +    Q  
Sbjct: 424 NITVLNNPGFSTVTAASVTTTETSLTGGSAEVPLFTDGSSAYTGVLSGTGAQMTGFAQRI 483

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT------NVT 399
           +  + L    S    +       AG     +        +      A          N T
Sbjct: 484 AVNTGLIIDPSRLVVYSTTPPTAAGDTTRPDFLTKQLTTSKYLYSAATGIGSTSAPYNGT 543

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L  Y +  +G    +   +  L     VV N + + YS + GVN+ EE++ L+ ++ +Y+
Sbjct: 544 LSSYLQQFVGQQGSDALAASQLAEGQSVVLNTLQQKYSTSSGVNMDEEMAHLLSLQNAYS 603

Query: 460 ISNKLIMFTDKMLQTLLEGV 479
            + +++   ++M Q L++ +
Sbjct: 604 ANARVMSTVNQMYQALMQVM 623


>gi|188580158|ref|YP_001923603.1| flagellar hook-associated protein FlgK [Methylobacterium populi
           BJ001]
 gi|179343656|gb|ACB79068.1| flagellar hook-associated protein FlgK [Methylobacterium populi
           BJ001]
          Length = 632

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 141/437 (32%), Gaps = 20/437 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRSENK 60
           L  F+ A         Q   + +NI N     YVRR      +      V   T      
Sbjct: 3   LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLSPVAAGVGNAGVATGTIGRALD 62

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K L + +S      L+       + +      +++     +    SL++ + N + 
Sbjct: 63  AAALKQLRSETSGAAYTGLMAQTRTQLDTLYGRPGDSSALDGVFNSFTLSLQTLAANPTS 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                TV+ +A ++     ++A  VQ +R+  + ++  +       L++L  +N  I   
Sbjct: 123 TAARATVLSSASDLATRIGSAANGVQALRSGLESQLAADTDQASNLLAQLAKLNTRIVAT 182

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-------- 232
           +A      D  DQRD  L  +S +I I+ + +++  + V T  G TL +           
Sbjct: 183 SADDPSRPDLEDQRDQALTSLSGLIDINAVTQSDGSVSVLTGSGVTLLDRSNAASLSFDA 242

Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +  +    S +           G  +      A+  G I A +++RD+V+P  Q
Sbjct: 243 RGTLSANALYSNDPSQSGVGTIVATTPGGGKIDLLASGAIRSGSIAAAVELRDTVLPQAQ 302

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  L  + S++        +         +  L          T+ V     + 
Sbjct: 303 RQLDDLAAGLSRAMSDRVATGTVPTDGTKGGFDIDLTGLSAGNAI----TLTVQDGSGTQ 358

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +      +                +  +               I   +T       +
Sbjct: 359 RNLILLPSYQTPPPAIPAGATDDANATVIPFTIRRPDAVPPRTADEIRGAITAALGGGYT 418

Query: 408 IGWLEKNRSDSHDLHMK 424
           +  +    + +  +   
Sbjct: 419 VSGVPGGEAGAVRILSS 435



 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 1/238 (0%)

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
                  T++     I   +      S VP G+  A+  +      +             
Sbjct: 394 PDAVPPRTADEIRGAITAALGGGYTVSGVPGGEAGAVRILSSGGAALVAASASVTQVTSA 453

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                         +     +  G  D  ++L               S  S +   G+ +
Sbjct: 454 ADIKGSATQIPLFVDGASATLFTGSFDGGSQLTGFAQRIAVNPTVVGSAGSLVGITGTGT 513

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
              + +          +         +          T  ++ ++ +  I       + +
Sbjct: 514 ASGIGDGARPQALFTALTG-TQRLFSSSSGISGINAPTRSSVADFVQGVISVQGAAAAAA 572

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            DL     +  +     +++  GVN+ +E+S LI ++Q+Y  + +++     M+ TLL
Sbjct: 573 QDLDEGQGIALSTAQGRFASASGVNIDQEMSNLIALQQAYAANARVLTAARDMIDTLL 630


>gi|320354325|ref|YP_004195664.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122827|gb|ADW18373.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM
           2032]
          Length = 434

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/487 (9%), Positives = 117/487 (24%), Gaps = 60/487 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVT 54
           M + +      +  N  SQ  + I  N+ N +   +    ++ +            T   
Sbjct: 1   MGIQSALYSGVSGLNTNSQAMSVIGNNLANTNTLGFKGSRSIFSDLLSSNVFGSGGTSQV 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R    ++ D +    +          + E +   +  +   + +        R   E Y
Sbjct: 61  GRGVGLSIVDSIYSQGTFETTSSDTDVAIEGVGFFVLKEAGNDTAYYSRAGAFRFDDEGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N     +   + D                                     L  +   +
Sbjct: 121 LVNPEGFRVQGKLFDPTN-------------------------------NSTLLPMDPTD 149

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +      + +    L     L +  + I   + I  NNN    Y++            
Sbjct: 150 IQVANVGLIEANPTSELTFTTNLDENSTVISSATPIDPNNNATYNYSASSQIFDSLGESH 209

Query: 235 INFEKMN-SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           +           T+     +      ++                +    +          
Sbjct: 210 LITVYWRLVNDATNTWEAAYTIDNDAATITAITDFDASTAGNQAMSFDNIGKA------- 262

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                       P               G     N       E      QY S+   +  
Sbjct: 263 ------------PDTNGDGVPDPFTTTVGPITWANGAATSTIELSFDCTQYDSDSIVIGQ 310

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             +          ++     ++  Y +    N     +A       L     N   ++  
Sbjct: 311 QQNGYAAGELTNVSINSEGVVVASYSNGRQINISQLVLAKFQNPGGLKLAGAN--RYIAP 368

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             + +  + +    +   +  +      V++ +E   +I  ++ +  ++K+I   D+ML 
Sbjct: 369 AEAGTIRVGLPGPEL-GKLFTNSLEQSNVDMGQEFVKMITTQRGFQANSKIITTVDEMLS 427

Query: 474 TLLEGVK 480
            L+   +
Sbjct: 428 ELINLKR 434


>gi|294665573|ref|ZP_06730854.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292604671|gb|EFF48041.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 624

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   ++++  A D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLITVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399



 Score = 70.4 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/446 (8%), Positives = 114/446 (25%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LITVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S      S+   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++   +  +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             ++    +       +      +       + +       A         +        
Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478

Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              P   +    +   G            +   +           ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSGDNGNAKLLANIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      +       +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624


>gi|119469950|ref|ZP_01612755.1| flagellar hook protein E [Alteromonadales bacterium TW-7]
 gi|119446660|gb|EAW27933.1| flagellar hook protein E [Alteromonadales bacterium TW-7]
          Length = 454

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 114/483 (23%), Gaps = 41/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
            FN A      A +       NI N +   +            +    + R         
Sbjct: 2   SFNIALTGIAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGRTKNGDGVQT 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++      + + A+ + + A D             +   +++ 
Sbjct: 62  TMVAQQFHQGSLQFTNNSLDLAITGEGYFAMSQDLGAQDFT----YTRAGAFKLDKDNFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D A     + + S     +I   +              L        
Sbjct: 118 VDAKGNYLQGFPVDEATGDTTSVSLSTSSALQIPDSSGSPRATTNVYSSFNLDSRADA-- 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                                    I+     S    ++    VY S G           
Sbjct: 176 -----------------------PSIAFDPETSASYNSSTSTTVYDSLGEPHVLQFFFVK 212

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
               +       E+           +            +  Q   S +P   + +     
Sbjct: 213 TDSAVTGNDNEWETYATLDGKSFSPAGLEETAAPFTPLSTFQFDSSGLPSSTDGVANTGT 272

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                       A    +      A    D+D         T  V  QY S         
Sbjct: 273 TFNPLTVPGGAGAAAGLSDVLTNGASFPDDIDINWRDEAGTTNKVPTQYASRFEVKALDQ 332

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        ++     ++  Y +  +       +   + +  L +       W +   
Sbjct: 333 DGATVGRLAGIDIGTDGKVVASYSNGDSTFLGQVAMVRFSNSQGLQQVGD--TAWKKSLT 390

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S               I+ S      VNL  EL  LI  ++++  +++ +     + Q +
Sbjct: 391 SGEPIAGEPGSGTLGSINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTLQQAI 450

Query: 476 LEG 478
           L+ 
Sbjct: 451 LQI 453


>gi|92116887|ref|YP_576616.1| flagellar hook-associated protein [Nitrobacter hamburgensis X14]
 gi|91799781|gb|ABE62156.1| Flagellar hook-associated protein [Nitrobacter hamburgensis X14]
          Length = 619

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 152/449 (33%), Gaps = 20/449 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           MSL +  + A +         + +  N+ NA+   YV +  +        +   V V+  
Sbjct: 1   MSLSSALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQIVTGSTGSGVRVIGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      L   ++       + +     + +      + +  + ++    +L++ S
Sbjct: 61  NRTLDTYVQSQLRTENAGGAYADQIANVLGQLQNVYGTPGNDGTLENALNNFTSALQALS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +        +V++ A+ + Q  N +   +Q +R++A++++ + +S     ++++  +N 
Sbjct: 121 ASSGNTAAQSSVLNAAQALAQQLNATTSGIQTLRSNAEQDLSVSVSQANAAMAQIAQINQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG-TTLFETVPRD 234
            ++  +A    A   +DQRD  + ++S ++ +  +    N   V+T+ G   +       
Sbjct: 181 KLQGMSAQDPAAATLMDQRDSAVDQLSRLMDVRAVTDGANQTSVFTTSGIQLVGGVQAST 240

Query: 235 INFEKMNSYTVTSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           ++F   +S T  S+ N                +G  +      ++  G+I A +Q+RD  
Sbjct: 241 LSFNAQSSLTANSQWNADPSKSSVGTIICQLPNGAKIDMIATQSINSGQIAADVQLRDKT 300

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   QNQ+D+MA  L  + S+       +   P  +  D    L                
Sbjct: 301 LVQAQNQVDQMAATLASALSDVTTSGTKTAGPPVSYATDLTNVLPGNSFNVTYTDSSNVQ 360

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +                 N  +      +      +     +   +   N N + + 
Sbjct: 361 HNVTVVRVDDPTARPIPNTASNPND--KVIGVDFSGDAASVAAQLSAALGSSNLNFSGVG 418

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            +           + +        +   +
Sbjct: 419 MSLQVTSTAASTVNAASTTTTVQSLASGN 447



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 127/432 (29%), Gaps = 10/432 (2%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S        ++    SA+ Q   L    A+ +  +    +  S    +  ++ S  S++ 
Sbjct: 186 SAQDPAAATLMDQRDSAVDQLSRLMDVRAVTDGANQTSVFTTSGIQLVGGVQASTLSFNA 245

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S     +   D ++  V           KI   A + I          L + T+V   
Sbjct: 246 QSSLTANSQWNADPSKSSVGTIICQLPNGAKIDMIATQSINSGQIAADVQLRDKTLVQAQ 305

Query: 177 IKFKTASKHDAHDFLDQRDVLLQK----ISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            +    +   A    D      +     +S    ++ ++  N+  V YT           
Sbjct: 306 NQVDQMAATLASALSDVTTSGTKTAGPPVSYATDLTNVLPGNSFNVTYTDSSNVQHNVTV 365

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++         T+ +    + GV  S +  S   +          +        Q+  
Sbjct: 366 VRVDDPTARPIPNTASNPNDKVIGVDFSGDAASVAAQLSAALGSSNLNFSGVGMSLQVTS 425

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A   + + S    +   +   P L        L      G +  I          + L 
Sbjct: 426 TAASTVNAASTTTTVQSLASGNPQLPFFTDRASLYTGAITGTASQITGLAGRIQVNAKLL 485

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------VTLLEYARN 406
              S    +  +    AG     +   D                        TL  + + 
Sbjct: 486 ADPSKLTIYNTSPVTPAGDTTRSDFIFDQLTSATYTYSPNTGLGAAAAPFKGTLPSFLQQ 545

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +       + +  +     VV N + E ++   GVN+  E++ LI ++ SY  +  ++ 
Sbjct: 546 FVSVQSSAATTAKQVAQGQDVVVNTLQEKFNAKAGVNIDTEMTNLIALQNSYAANAHVMS 605

Query: 467 FTDKMLQTLLEG 478
               M+QTLL+ 
Sbjct: 606 VVQSMMQTLLQA 617


>gi|302878282|ref|YP_003846846.1| flagellar hook-associated protein FlgK [Gallionella
           capsiferriformans ES-2]
 gi|302581071|gb|ADL55082.1| flagellar hook-associated protein FlgK [Gallionella
           capsiferriformans ES-2]
          Length = 646

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 147/441 (33%), Gaps = 22/441 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
             +++ + +  N A    ++   NI NA+   Y R+  +               + V V 
Sbjct: 3   SNIYSASLSGMNAAQFALSTTQHNIANANTPGYSRQTMLVNSRAAQATGAGFVGQGVDVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                        +    +         +     + M AD       +  I    ++  +
Sbjct: 63  GVVRNYDQFLTTQVRQEQTQASYLSTYLTSMKQIDNMVADPAA--GVSPAIQNFFNATNA 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N       +TV+  AE  V  F    + +  I      +I   +  +  + +++  +
Sbjct: 121 LASNPESIPARQTVLSTAEATVNRFQAMDQRLTDISNSLTTQIASSVQTVNTYATQIATL 180

Query: 174 NDAI--KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           N++I     TA     +D LDQRD L+  +++ I +ST  + +  M V+  +G  L    
Sbjct: 181 NNSIKSAIATAQGQQPNDLLDQRDQLVNLLNKEIKVSTQQQTDGSMSVFVGNGQALVVGD 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    N    +        +G  V+  Q S++  G + A L  RD  +   +N L 
Sbjct: 241 QAMALQVVQNPADPSKVDVAYLNNGKSVTMQQ-SSLQGGNLGAYLTFRDQSLEPARNALG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-----LDNKLCQGISETICVNPQYRS 346
            +A  L  + ++++ +  +     G  I   +       L+N     ++ TI       +
Sbjct: 300 RVALGLATNINQQNQMGLDLNGALGASIFKDVLPRVDKGLNNAGAGVLTATISNMAAVTT 359

Query: 347 NPSFLRDGGSVSKKF--LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +   L+  G+         N     G    +       +   +  P      +  L+   
Sbjct: 360 SDYQLKFDGANYTMTRMADNQLTNLGTAASVMPLTQVVDGVSVVIPAGMFAGDSFLIRPV 419

Query: 405 RNSIGWLEKNRSDSHDLHMKS 425
            N+   +    +D   L   +
Sbjct: 420 ANAARDMGVLTTDPTKLATAA 440



 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 98/396 (24%), Gaps = 13/396 (3%)

Query: 87  KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                +     +S          +    S   + + LG+  +  A  + Q          
Sbjct: 262 LNNGKSVTMQQSSLQGGNLGAYLTFRDQSLEPARNALGRVALGLATNINQQNQMGLDLNG 321

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS--EI 204
            + A   K++   +           +          +  D     D  +  + +++  ++
Sbjct: 322 ALGASIFKDVLPRVDKGLNNAGAGVLTATISNMAAVTTSDYQLKFDGANYTMTRMADNQL 381

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             + T         V       +   +    +F          +   +  D   +++   
Sbjct: 382 TNLGTAASVMPLTQVVDGVSVVIPAGMFAGDSFLIRPVANAARDMGVLTTDPTKLATAAP 441

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                        +  +        L+   +V +            +  +P +  A    
Sbjct: 442 MISTTATTNTGTGVITAGSVNTPLPLNANLQVPVTITFTSATSYTVTGALPAVAGAVAYT 501

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           +       G + TI   P                     N        + +         
Sbjct: 502 EGVPITYNGWTATITGTPA-----------AGDVFNVKSNTTATGDNRNALLMAALQTQN 550

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                   G N    L       +G +     +          +      +  +  GVNL
Sbjct: 551 LLASSGGVGANATTNLQGAYSQFVGSIGAKTQELLVTSTAQDAMVTQTVATQQSVSGVNL 610

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE + L++ +++Y  + K +   + M  +LL   +
Sbjct: 611 DEEAANLLRYQRAYQAAAKAMQIANTMFDSLLTLGR 646


>gi|227328344|ref|ZP_03832368.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 564

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 140/414 (33%), Gaps = 14/414 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +    A    +++  NI N     Y R++ +   +             V V
Sbjct: 1   MSNLINTAMSGLKGAQVALSTVSNNISNQAVIGYSRQNAILEQAISSSTSAGYIGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +        L A  +      +   +E + ++ +       S +  I     +L+
Sbjct: 61  VSINRQYNEFITNQLRAAQTTSS--SVSAYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N  +    +TV+  AE +V  F  + + ++ + +  + +I+  +  +     ++  
Sbjct: 119 NLTSNAGDSSTRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSIVGLVNTHTDQIAS 178

Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I       S    +D LDQRDVL+ ++++++G+   V++     V   +GT L + 
Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDVLVDQLNKLVGVDVTVQDGIVYNVALKNGTNLVQA 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +         V S   S +  G +  LL  R   +   + QL
Sbjct: 239 GTSNELVAIASSNDPTRLTIGYKDQTNDVVSLNESTLTGGSLGGLLSFRTETLDEARGQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     +   V G       K +     +     +       +    
Sbjct: 299 GQLALAFADAFNTQHQQGYDRNGVKGGDFFSFGKAVVLNDSKNGGNAVLAPSYTNTKDVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +         W V  L+           S N          I       +  
Sbjct: 359 ATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDNSLNFDGVKMAITGTPATNDSF 412



 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/425 (9%), Positives = 115/425 (27%), Gaps = 17/425 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-- 114
            +  +  +  + +    +       +    +       +    P   + +    ++    
Sbjct: 152 RDMDSGLNTQIQSIVGLVNTHTDQIASLNNEITKLMGANSGTMPNDLLDQRDVLVDQLNK 211

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
              +   +    V + A +   N   +    + +   +  +        +   +++  +N
Sbjct: 212 LVGVDVTVQDGIVYNVALKNGTNLVQAGTSNELVAIASSNDPTRLTIGYKDQTNDVVSLN 271

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           ++     +         +  D    ++ ++        N      Y  +G    +     
Sbjct: 272 ESTLTGGSLGGLLSFRTETLDEARGQLGQLALAFADAFNTQHQQGYDRNGVKGGDFFSFG 331

Query: 235 INFEKMNSYTVTSES-NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 +S    +    P + +   V +   S    G    + ++ D+          + 
Sbjct: 332 KAVVLNDSKNGGNAVLAPSYTNTKDVQATNYSIKYDGANWQVTRLSDNSKFTAAVDTSDN 391

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +    G           +++     + D I D+   +               +    L  
Sbjct: 392 SLNFDGVKMAITGTPATNDSFLLKPVNDVIIDMAVAVSDPNKIAAASVKLDENGAPVLDG 451

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G+     + +  N      L N                 +    ++     + +G +  
Sbjct: 452 SGNPVFGGVSDNTNAKALLALQNEKI--------------VGGKASVSGAYASLVGAIGN 497

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S     +   Q V   ++    +  GVNL EE   L++ +Q Y  + ++I     +  
Sbjct: 498 QTSTLKINNTSQQNVVKQLTAEQQSVSGVNLDEEYGDLMRYQQYYIANAQVIKTAQSIFD 557

Query: 474 TLLEG 478
            LL  
Sbjct: 558 ALLAA 562


>gi|153954739|ref|YP_001395504.1| hypothetical protein CKL_2121 [Clostridium kluyveri DSM 555]
 gi|219855203|ref|YP_002472325.1| hypothetical protein CKR_1860 [Clostridium kluyveri NBRC 12016]
 gi|146347597|gb|EDK34133.1| FlgK [Clostridium kluyveri DSM 555]
 gi|219568927|dbj|BAH06911.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 632

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/460 (14%), Positives = 143/460 (31%), Gaps = 29/460 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++FN A++              NI NA+ + Y R+      +               
Sbjct: 3   GLFSIFNTAKSGLFAQQTSINVTSHNIANAETEGYSRQRATLVTTTPYTMPSMNAATIAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                VTV +      +  D  +   +   G       + +  E +  ++  ++  +  +
Sbjct: 63  QLGTGVTVASIDRIRDSFLDYQIRVENGVNGHYTAKDKYLSQVENVL-NEPTDSGISSLM 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S+  +S +  S +        TV   A ++  + N+   ++  I+ +A  EI+  + ++ 
Sbjct: 122 SEFFNSWQDLSSSPQNTS---TVAQQAYQLTNDLNSVYSQLTSIKDNAKSEIKSAVVDIN 178

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L++++ +N  IK    S ++ +D +D RD+LL ++SE  GIS   R    + V TS+ 
Sbjct: 179 GMLTQISQLNQQIKDVKMSGNNPNDLMDSRDLLLDQLSEKFGISIDPRKYEGIDVTTSNS 238

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           +        D N          S  N +  +     +    +      K       +   
Sbjct: 239 SI---YGDADDNGAAPLISEGGSPLNIVQANDADNINVATFSCVTSITKKTDADGTTGKA 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD--GIKDLDNKLCQGISETICVNP 342
            ++    +    L         ++   E    L  +      +          +      
Sbjct: 296 TYEVSYYKKGDTLSDDNKVTIYVSMTEEEADKLDTSRVLWANNEGTAYKVKDGKDASGKD 355

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               + S   +  +V     +N   L   P        S   N             +L  
Sbjct: 356 AKVIDGSLNNNSTTVDSPISFNQLALFTPPSGELKGYVSVQNNVAEYQDELNRLAKSLAV 415

Query: 403 YARNSIGWLEK---NRSDSHDLHMKSQVVFNHISESYSNT 439
                +        + S S +  + +  V      + S  
Sbjct: 416 SVNAIVSQSSTWVADNSGSPEGGINNFFVNGDTDGNNSEE 455



 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%)

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
              +     +S  P        +     G+ SE+D    N+ N+                
Sbjct: 422 SQSSTWVADNSGSPEGGINNFFVNGDTDGNNSEEDENNINAGNITVNIDILNDPSKIKIA 481

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
            +  S    +     SN +      + S   + +V   +   DLI     + +       
Sbjct: 482 TKYDSNGNSLGTDTDSNRALAIAQLANSLMNIQSVTEDSSREDLIGDIFATKDTLNNVYA 541

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           V  +N   TL  Y  N +  +  +  ++              ++S  +T GV+L EE++ 
Sbjct: 542 VGSVNGGSTLDNYFNNLVNKVGMHEEEAKKQVDYEATQLESFTQSRESTSGVSLDEEMTN 601

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI+ +  Y  + K+I   D++L  ++ G+K
Sbjct: 602 LIQFQHCYQANAKMISTVDELLDVVINGLK 631


>gi|90408066|ref|ZP_01216237.1| flagellar hook-associated protein 1 FlgK [Psychromonas sp. CNPT3]
 gi|90310823|gb|EAS38937.1| flagellar hook-associated protein 1 FlgK [Psychromonas sp. CNPT3]
          Length = 693

 Score =  134 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/409 (13%), Positives = 135/409 (33%), Gaps = 16/409 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  +F    +  +++    A+   NI N + K Y R+                      V
Sbjct: 1   MADLFQIGLSGIHSSQASLATTGHNIANINTKGYSRQSVEVVTGGADRYGSNFIGRGALV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +               ++S +   + + +     + + +D   + S T  + ++  ++ 
Sbjct: 61  NSIERAYDRFAFTENVMNTSQLAYSKEVFTQTNQIDALLSD--SSTSATKPVLEVFKAIN 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + +     +  ++++  ++  ++     ++      + +I      L      +  
Sbjct: 119 GVADHPNMLESRQVFLESSSNMINQYHRLYDNLEIQYNSINHDITNSAKTLTTLAENVAQ 178

Query: 173 VNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N  I     S  D  ++D LD+RD  + K+SE + +S +   N  + VY   G ++   
Sbjct: 179 LNVQIAAVLGSGGDSRSNDLLDERDRAIAKLSEFVDVSVVPVKNGMVNVYVGSGQSIVMG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                          + +   + ++G +V          GKI AL  +R++ +    NQL
Sbjct: 239 TTSLNIISVNGDPDPSRQELAMNVNGNLVK--LDGVRMGGKISALFDVRNNDIEKAFNQL 296

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +    L  S +E+       E   G  I + I    +   + ++    +     S    
Sbjct: 297 GQNIMGLTHSMNEQQKQGQTLEGKIGGDIFNDINSRQSMKNRVLAHNDDLGSAQLSLRVD 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                S  +  L      A           +   N   D  A    +++
Sbjct: 357 DLSLLSADEFTLEVNDYQAATATTAEKIAFTLTNNRTGDTQAVSINDLS 405



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/470 (10%), Positives = 134/470 (28%), Gaps = 15/470 (3%)

Query: 17  ASQQFASIVRNIENAD-NKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIG 75
            S    +   NI + + + +  R++    ++   V +   R   K      +  +     
Sbjct: 233 QSIVMGTTSLNIISVNGDPDPSRQELAMNVNGNLVKLDGVRMGGKISALFDVRNNDIEKA 292

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +L Q+   L   M+       +    I   + + + S     +  +     + +A+  
Sbjct: 293 FNQLGQNIMGLTHSMNEQQKQGQTLEGKIGGDIFNDINSRQSMKNRVLAHNDDLGSAQLS 352

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           ++  + S     +   + +       +   +      + N+      A   +      + 
Sbjct: 353 LRVDDLSLLSADEFTLEVNDYQAATATTAEKIAFT--LTNNRTGDTQAVSINDLSKTKRV 410

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           D+    +S  I              ++   T L        +         ++E N I  
Sbjct: 411 DLPNTGLSLGIDAIIAADPPQVGKKFSLRPTRLGAQEATLQHQNPEKIAAASAEINVIQK 470

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
                ++    +     +  L   +D         L  +     G     D +  +   +
Sbjct: 471 KENNGTAQLRVSALHDPLDPLYMKKDE-------PLSIVITGNTGGVLTYDIVNKDGNII 523

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRS----NPSFLRDGGSVSKKFLWNVKNLAG 370
             +  +             ++               N + +          + ++ +L  
Sbjct: 524 SLVPGSSNNYVPPKSNGDLLTGLTVTPDLLSGKVTFNIAGIDVEMYQGSPLVGDIFSLNY 583

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                    +      +       N   T  +     I  +    +++      + ++  
Sbjct: 584 NETGDGDNSNILEMAALQGKKIMNNNKATFQDIYSGMISEIGSRTANADISMKSATILQQ 643

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              E   N  GVN+ EE + L+  +Q Y+ + ++I    ++  T+L+ V+
Sbjct: 644 QSFERVENVSGVNMDEEAANLLMFQQHYSAAARVISVAGELFDTILQAVR 693


>gi|254294559|ref|YP_003060582.1| flagellar hook-associated protein FlgK [Hirschia baltica ATCC
           49814]
 gi|254043090|gb|ACT59885.1| flagellar hook-associated protein FlgK [Hirschia baltica ATCC
           49814]
          Length = 714

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/428 (12%), Positives = 132/428 (30%), Gaps = 7/428 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV----VTQR 56
           MS+ ++   + +         +++  N+ N + + Y R DT               V  +
Sbjct: 1   MSIGSIMATSLSALRANQSALSTVSTNVANVNTEGYTRLDTHFNSLGAVSGSFGVEVKVQ 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                         ++ +G   +L  F    + +  +     S    +  + DS+ S + 
Sbjct: 61  RAADKFLAASEMRTAATVGATSVLAGFMDRAQGLLGNPSDGGSVFASLDAVLDSMGSLAL 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + S  +   + I + + ++   N +A E+  +R +A+ ++   I      +  +  +N +
Sbjct: 121 DPSSSLRQGSAISDIQNMLNQVNQTADELSALREEANAQLRSVIGEANTLMETIAELNTS 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I+    +  DA    +++ +L+ ++SEI+ +    R    + + T++G  L        +
Sbjct: 181 IQQSKIAGVDATQAENEQSILIDRLSEIVDVRAQERPLGGVDLRTTNGYLLVSMEAASFS 240

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
              ++       S  +              +  G+I  L+Q RD  +P       E A  
Sbjct: 241 MGDVSGLQ-GYPSVEVSHSNESSKLPLDKYIQSGEIMGLIQARDVDIPELSVAFGEYASG 299

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L+ S + +   A        L  ++      +         + +          L     
Sbjct: 300 LVDSLNAEHNNASAVPAPNVLTGSNTGLIDSDIHSFEGVAHMAITNSDGEIVRNLTIDFD 359

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +    A  P  I         +   +   G +   +                 
Sbjct: 360 AGNISGIDEFGAAVGPIAIGATVGGLATS--LNTALGGDGTASFTNGVLEISANDASEGV 417

Query: 417 DSHDLHMK 424
                   
Sbjct: 418 AIRQDEDT 425



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 102/394 (25%), Gaps = 7/394 (1%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                      I            N   +I+    ID     +   +     V  I   A
Sbjct: 321 TGSNTGLIDSDIHSFEGVAHMAITNSDGEIVRNLTIDFDAGNISGIDEFGAAVGPIAIGA 380

Query: 153 D-----KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                   +   +           V+  +    +       D     D   +  S + G+
Sbjct: 381 TVGGLATSLNTALGGDGTASFTNGVLEISANDASEGVAIRQDEDTPSDWAGRGFSHMFGL 440

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           + ++         T  G     +       + M     ++    +    V  ++    A 
Sbjct: 441 NNLIEKPTPTNYATGLGGAGEASPHGFTTGQTMTFDIRSNTGAILNTVTVSPTTGGTIAD 500

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              ++   L    SV                      D +   +        A     L 
Sbjct: 501 LVTQMNTSLNGYGSVSIDDDYGTITFQGAANTKSDSLDIVVDTTSRTGSGISATQFFGLS 560

Query: 328 NKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                  ++ I +      + S L      +      +     G          S     
Sbjct: 561 VAGSADRAKDIEIRDAILKDYSKLATAKPDLDGAVEGDSVLEVGDGRGATALSLSGAVIR 620

Query: 387 IFDPVAGINTN-VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            F    GI     ++ +YA    G      + S      ++ V   ++    +  GV++ 
Sbjct: 621 QFGAAGGIAAQKTSINDYAARLAGAAGARATASEQALNSAETVRTEVAMRRESVEGVSID 680

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           EEL  + + +Q+YN +++++     M  TLL  V
Sbjct: 681 EELVKMTQYQQAYNSASRMMQAASDMFDTLLRLV 714


>gi|332994162|gb|AEF04217.1| flagellar hook protein FlgE [Alteromonas sp. SN2]
          Length = 458

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 130/483 (26%), Gaps = 37/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +       NI N +   +                          V  
Sbjct: 2   SFNIALSGVAAAQKDLDVTANNIANVNTVGFKESRAEFGDVYATSLLAGSKTKVGDGVLT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L   ++A+        F A       D+   +       + +   ++Y 
Sbjct: 62  QDVAQQFSQGSLQFTNTALDLAITGNGFFATV----PDETSRDFSFTRAGQFKLDDDNYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + D+L    +++         ++   VQ   +        E+       +    ++ 
Sbjct: 118 VNSNGDLLLGFPVNSDSTSSSVALSTTEPVQIPDSSGSPAQTSEVDIRMNLPAGDQGLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           A       +            +   + +   ++     +          T + + +   +
Sbjct: 178 A---AFDPQDPLTYNAATSVTVYDSLGDSHVMTYYFVKDVAADNEWYVATAVDDQLTDLV 234

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N    +S   T+ ++     G  V++ +      G    +          ++   + +  
Sbjct: 235 NSTGTDSDPTTAVNSLGTNTGNGVTAAKLVFSQGGDFIGIESPDGIQTTDYKLTTEALGS 294

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L         I  +    P                   + T     QY S         
Sbjct: 295 ALSNGADATQQIGIDFNLDP------------------SNATTVEPTQYASAFEVTSLEQ 336

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     +   + +  ++  +   +        L +  ++S  W E   
Sbjct: 337 DGLPVGRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFANEQGLTQ--QSSTEWKESIL 394

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I+ S      VNL  EL  +I  ++++  +++ +   + + QT+
Sbjct: 395 SGEALAGEATTGTFGEINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNNSLNQTI 454

Query: 476 LEG 478
           L  
Sbjct: 455 LNI 457


>gi|294624307|ref|ZP_06703010.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292601389|gb|EFF45423.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 624

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   ++++  A D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLITVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/446 (8%), Positives = 115/446 (25%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LITVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S      S+   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNTGSASLSASFSNVSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++   +  +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             ++    +       +      +       + +       A         +        
Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478

Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              P   +    +   G            +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      +       +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624


>gi|310816852|ref|YP_003964816.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25]
 gi|308755587|gb|ADO43516.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25]
          Length = 432

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/488 (11%), Positives = 128/488 (26%), Gaps = 64/488 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----VVTQ 55
           MS+ +  N      +  + + A+I  NI N+    Y R  T         +         
Sbjct: 1   MSISSSMNAGVAGLSANANKLATISDNIANSSTNGYKRAQTEFYAMVIGSSSTKYTAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLE 112
           R+    + D+   L + S+A       + F  +  + + +                 +  
Sbjct: 61  RTTATRVIDERGPLVSTSNATDIAISGRGFLPVTTLSAIEAGGALPFQMTTTGSFSPNAA 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y    S  +L     D+   +      +   +  +R   ++     + +    L+    
Sbjct: 121 GYLTTASGHVLMGWAADSTGSIGTQSRDTTSGLTPVRVLTNQ----VVGSPTTQLTLAAN 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +        A+       ++  D L +                                 
Sbjct: 177 LPATSTEAGATGTVETQVIEYYDNLGK--------------------------------- 203

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    + T++    P        ++         +  AL+   D V    +     
Sbjct: 204 ---------TKTLSVNYIPTVPATGESNTWTVEIYDDAQGGALVGTYDLVFDDSRTGGGR 254

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +  V   +    DP  G             +      +  G+        Q     + + 
Sbjct: 255 LLSVTTIAGGPYDPATGLMSID--------VASGPLTINLGVPGQADGMTQLSDGFAPVA 306

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +         +     L   Y +   +     PV  +     L      +     
Sbjct: 307 VTRDGAPSGTLTGVEVDASGKLYGTYSNGLTRLLYQIPVVDVPNVNGLQALGSQTYAV-- 364

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  L          +    S    V++  EL+ +I+ +++Y+ + K+I   D+ML
Sbjct: 365 SQDSGAFFLWDAGAGPTGEMLGYASEGSAVDVATELTQMIQTQRAYSSNAKVIQTVDEML 424

Query: 473 QTLLEGVK 480
           Q      +
Sbjct: 425 QETTNLKR 432


>gi|3493240|gb|AAC33326.1| hook associated protein I homolog [Caulobacter crescentus CB15]
          Length = 397

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 119/377 (31%), Gaps = 9/377 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL A+ + A +    A         NI N +   YVR+    +          V +   
Sbjct: 1   MSLNAIMSTATSGMMAAQTGLRVTSDNIANVNTTGYVRKTVSQSNLLSNGMGVGVNIDAI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +              +S  G+  ++ S     + +  D     S    +  +  +  S  
Sbjct: 61  KRATDQFLQSASLNAASESGRASIVASTLNSAQQLFGDPSGETSFFTVLDDVYAAFSSAQ 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +L    +   ++ +   +     + K+  DAD  I  ++  +   LS++  +N 
Sbjct: 121 DDPSSSLLRTQALTRLDDFLSGSSRITASLSKLGKDADTRIAADVGRVNDLLSQIDALNT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  DA    + +  L+ ++S+++ +    R    +VV +++G  L       +
Sbjct: 181 DITRAKVAGADATGAENVQSSLVDELSKLMNVQISPRTLGGIVVRSTEGLNLAGDGAAKV 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++   + T              V  N       G+I+ L+ +R+  +    +QL E   
Sbjct: 241 TYQTSATATGFLTVQLANGSDYPVPLNI----SSGEIRGLMDVRNIDLVNLSDQLGEFTS 296

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +     A +      L   +   D    L     +T               D  
Sbjct: 297 RATEEINRAANAASSVPAPTSLTGRNTGLDAQAALTGFTGKTTIALTTASGVIQRRIDID 356

Query: 356 SVSKKFLWNVKNLAGYP 372
             +     N      + 
Sbjct: 357 FDAGTMTVNGAAGPAFT 373


>gi|310659037|ref|YP_003936758.1| flagellar hook protein [Clostridium sticklandii DSM 519]
 gi|308825815|emb|CBH21853.1| flagellar hook protein [Clostridium sticklandii]
          Length = 418

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/478 (9%), Positives = 116/478 (24%), Gaps = 60/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++   N A +   N   +   I  NI N +   Y         S                
Sbjct: 1   MMRSMNSAVSALRNHQLRMDVIGNNIANVNTIGYKSSRVTFKDS---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++L   S   G           +  +  D    ++                       
Sbjct: 45  LSQMLRGAS---GPDASRGGTNPQQVGLGMDLSSIDTLFT-------------------- 81

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                           + + R +  +       +                  D  +    
Sbjct: 82  ------------TGVPDRTDRGLDVMVNGEGFFMVSADGTDNGMYYTRAGNFDIDEDGNL 129

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              D    L  +      +   +G   +   ++   + T++         R +       
Sbjct: 130 VNADGLRVLGYKTDDAGNVGNEVGGIVVPLADSIPPIATTNVVMEGNLDARAVLTGSTTP 189

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T+  ++     D +  S          +++      ++            +        
Sbjct: 190 PTIERQTEITVNDSLGTSHKI-------RLEFTKTAANTWNVTPTPITTPPSPAGTPVSI 242

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +P  G         +   +   +          +    QY ++ S L      S   +
Sbjct: 243 AFEPSTGKLTAASVKTLNMTLTPTNGASPVTFDVDLSALTQYGTDSSALMRSQDGSPVGV 302

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +    ++   + +   K       +       L++   N   +     S    ++
Sbjct: 303 LTSYAIGQKGEVEGVFSNGRTKILGQVATSIFANPAGLVKMGGNL--YRSSANSGDPQVN 360

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    +         V+L +E + +I  ++ +  ++++I  TD+ML+ L+   +
Sbjct: 361 KPGTGGNGGLQPGALEMSNVDLGKEFTNMIVTQRGFQANSRIISTTDQMLEELVNLKR 418


>gi|317406201|gb|EFV86450.1| flagellar hook protein FlgE [Achromobacter xylosoxidans C54]
          Length = 495

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/498 (10%), Positives = 116/498 (23%), Gaps = 28/498 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N A+Q    I  NI N+    +            +  V            +
Sbjct: 2   GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSSTASFADVYASSRVGLGTKV--AAITQ 59

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +   G      + +  K M    D           +      ++  N     L  
Sbjct: 60  RFTVGTVNGGGGEYDIAIDGAKGMFRVTDESGAIMYTRNGEFLVDKNNFIVNAQGYRLTG 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIEL------EISNLRRFLSELTVVNDAIKF 179
                              V          +         I  +    +     +  +  
Sbjct: 120 YPAGAIGANPVELQLPTANVAPKATTTATTVANLDANAKVIYQVDTVTAPPVNGSVTMTG 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE--TVPRDINF 237
            T +         +               T     N + +  +   T      VP   ++
Sbjct: 180 ATPASPATQYNFTRDATGNIVWVNQPPAGTYGAAPNLITIDAAGAVTTGNLAQVPGYKDY 239

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               +         +       S            + +            N + ++   +
Sbjct: 240 TAAVTEVGKPFDPKVTTSYTNASPMTVYDSLGNSHQVMQYFVKRAADAAGNSVYDVYYSI 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            G         G     P  F  +    + +     +S          ++P  +    + 
Sbjct: 300 DGQAMAPTTETGGVWGNPTQFTFNKAGVMTSATTVNLSFAAPGGGTTPADPLAVSVNYAG 359

Query: 358 SKKFLWN----------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
           + ++                     N+     L+  Y +          +A       L 
Sbjct: 360 TTQYGSAYALKAVPDGYTSGEFRGINIGADGSLVAQYTNGETSIVGTIVLADFANLQGLQ 419

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
               N   W E   S    L        + +    + +  V++ +EL  +I  +++Y  +
Sbjct: 420 PVGNN--AWKETATSGQPILGQPGSNGLSKVVGQATESSNVDMSKELVNMIIAQRTYQAN 477

Query: 462 NKLIMFTDKMLQTLLEGV 479
           ++ I   D+++Q L+   
Sbjct: 478 SQTIKTQDEIMQVLMNLK 495


>gi|302343763|ref|YP_003808292.1| flagellar hook-associated protein FlgK [Desulfarculus baarsii DSM
           2075]
 gi|301640376|gb|ADK85698.1| flagellar hook-associated protein FlgK [Desulfarculus baarsii DSM
           2075]
          Length = 574

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 148/433 (34%), Gaps = 21/433 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
            + ++ + ++   N +  Q   +  N+ N +   Y R+  +                 V 
Sbjct: 3   GIYSMMDISRWALNASVDQLDVVSHNVANVNTPGYSRQVAVLATRNPQYSSKGYFGNGVQ 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             T       +    L A++S         S     E + A++  +      I+ L ++ 
Sbjct: 63  TTTVMQYVDKLLLGRLTANTSDTSYYSAKLSQLTRLEAL-ANEASDTGLGAQITSLFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  S N     +  ++ + A  + Q F + A ++  ++ D D  ++  +S        + 
Sbjct: 122 QDLSNNPESSAVRASLQETASNMAQRFQSVANDMLSVQRDIDGYLKDAVSQANLICRTIA 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I+    S H A+D+ D+R   L +++ ++ IS    +   + V TS G +L   V
Sbjct: 182 DLNLKIQQSEVSGHSANDYRDERQRQLNELAGLMNISWYEDSTGAVNVQTSSGKSLV-QV 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKALLQIRDSVVPIFQ 287
               + +           +    + +V +S       + +  G I A L +RD+ +    
Sbjct: 241 NYPGDNDPDPLAFEERLGDGYEHNQLVWTSGGLVMDYTEITGGSIGAWLDVRDNQIEDML 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-----LDNKLCQGISETICVNP 342
           + ++++A+ +I   ++          +  +  A   +                E +  + 
Sbjct: 301 DYMNDLAKTIIFDVNKLHASGAGLSAMTSVTGAYQAQSASAALNSADNLAYGDEIVAGSF 360

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                    R   ++  K   ++ ++A   + +     S +        A      T   
Sbjct: 361 DIWVYQGGTRIKTTIDVKPTDSLDDIAAAINGVTGLNASVSSLNTLTIHADEGAEFTFAN 420

Query: 403 YARNSIGWLEKNR 415
              N +  L  N 
Sbjct: 421 DTSNVLAALGVNT 433



 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 112/305 (36%), Gaps = 6/305 (1%)

Query: 177 IKFKTASKHDAHDFLDQRD-VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           + +   +      +LD RD  +   +  +  ++  +  + + +  +  G +   +V    
Sbjct: 275 MDYTEITGGSIGAWLDVRDNQIEDMLDYMNDLAKTIIFDVNKLHASGAGLSAMTSVTGAY 334

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +  ++   ++++     + V  S +        +IK  + ++ +              
Sbjct: 335 QAQSASAALNSADNLAYGDEIVAGSFDIWVYQGGTRIKTTIDVKPTDSLDDIAAAINGVT 394

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L  S S  + +  +++       A+   ++   L                N +   D G
Sbjct: 395 GLNASVSSLNTLTIHADEGAEFTFANDTSNVLAALGVNTFFDGSTATSISINETIANDVG 454

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            +    + +   L+           + +   + D  + +   VT  E   +    L    
Sbjct: 455 RICAGRIGDDGELS-----KGDNTAALDIADLKDSDSMLGDTVTYNESLISWAASLGTTI 509

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S++ D +  +    + +     +  GV+L EE+  +I+ ++SY ++ ++I  +D++LQTL
Sbjct: 510 SNATDSYSFATETTSSLENLRDSMSGVSLDEEMVRMIQFQRSYQMAAQMIQVSDELLQTL 569

Query: 476 LEGVK 480
           +  VK
Sbjct: 570 IGIVK 574


>gi|220905263|ref|YP_002480575.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869562|gb|ACL49897.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 715

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 92/283 (32%), Gaps = 12/283 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           L  + N  +     +    +    NI NAD + Y RR      +             V  
Sbjct: 2   LNGLLNIGKTALGASQAWISVTGSNIANADTEGYSRRYVDQRDAGTITAKPGGESLGVNA 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      ++     S+   + +      +  E +  ++      +  + K     +
Sbjct: 62  QQIMRFFDAFLERSYVRQSTNSSRWKEQDMILSSVENLF-NESNRAGISSSLDKFFKGWQ 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             ++   ++   ++++  A+ +   F+++A  ++ I+ + D  I+  +  +      +  
Sbjct: 121 DLTQLPDDNAYRESLLSQADNLSDMFSSTAAGLKAIQNEMDVSIKQSVDRINALSRGIAD 180

Query: 173 VNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I   T     + +  LDQRD ++++++ ++ + TI     +  V  + G  L +  
Sbjct: 181 LNRQITTNTVDGVSNPNALLDQRDQMVRELASLVDVETIDNGKGNFTVQLTTGQPLVQGQ 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
             ++                 +   +              +  
Sbjct: 241 NVNVLEVMGPRSESHLSVGSAYKGSIEFQGTDNHEYTVDIVTG 283



 Score = 99.7 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 1/243 (0%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + SN +    +              ++ +  + +S  P        M +  
Sbjct: 474 TTGEFRNTDTGSNTLDFSSITPPGTVNFDPAHHTLQDVCNVINSSFPDASAPGLNMLKAT 533

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I                  + +          +    +     N    S      +  + 
Sbjct: 534 IQDGKLLIEANPACNVSFAMGVDSTGLMAALGINTFFTGDSATNMAVSSQLHSNVNLIAA 593

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 N +   G         +  +K           +N ++ EY    +  +  ++  
Sbjct: 594 GAVNGQN-QANKGDNVTATAIGELASKKVTVSTTWKTVSNQSIGEYYATLVTTVGADKRL 652

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       + +   + +  ++  GVNL EE+S LIK + SY  + KLI   D+MLQTLL 
Sbjct: 653 AKTNAEYHKALATDLEDRVTSVTGVNLDEEMSNLIKFQHSYTAAAKLITTADQMLQTLLG 712

Query: 478 GVK 480
             +
Sbjct: 713 LKQ 715


>gi|21242721|ref|NP_642303.1| flagellar hook-associated protein FlgK [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108196|gb|AAM36839.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 624

 Score =  134 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   ++++  A D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399



 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/446 (8%), Positives = 116/446 (26%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T      + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S      S+   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHSQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++   +  +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             ++    +       +      +       + +       A         +        
Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478

Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              P   +    +   G            +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      +       +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624


>gi|84388097|ref|ZP_00990993.1| flagellar hook-associated protein [Vibrio splendidus 12B01]
 gi|84377164|gb|EAP94034.1| flagellar hook-associated protein [Vibrio splendidus 12B01]
          Length = 626

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 136/401 (33%), Gaps = 19/401 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +                 V V 
Sbjct: 3   SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGVNDPRQYGGQSYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++    +   ++   +   M +           +++  DS+++
Sbjct: 63  NVRRSWDQFAVKELNLSTTNAANKGDTEANLDMLSSMLSSVASKK-IPENLNEWFDSVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A  V +  N     V++     +K++E+ I  + +   E+  V
Sbjct: 122 LADTPNDVGARKVVLEKAGLVTKTLNEFHETVRQQSDSTNKKLEVGIERVNQIAVEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D  DQ + L+ ++S    ++   R+N     V+  +G TL     
Sbjct: 182 QRLMMRTP---GPHNDLRDQHEKLINELSGYTKVTVTPRSNAEGFNVHIGNGHTLVSGSE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++    T +     ++G  +     + +  GKI A+L +RD  +P   ++L  
Sbjct: 239 ASQL-KLVDGLPDTHQRRLAIVEGKSLKPITSNDI-DGKIGAMLDMRDEHIPDIMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC--VNPQYRSNPSF 350
           +A       +       +     G  I   +        +  + +        Y  + S 
Sbjct: 297 LATAFSEKVNSLQSQGLDLNGNVGQDIFTDVNSERVAKSRVTAGSQSKADVAVYIDDTSA 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
           L+ G    K    +        + +    +S    F  D +
Sbjct: 357 LKGGEYGLKYDGSDYVVTKPDGETVKVSTNSAGNAFYLDGM 397



 Score = 96.6 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 96/342 (28%), Gaps = 5/342 (1%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVL 197
              +  I  +  +        +    S+   +N  +     +  ++      R       
Sbjct: 284 DEHIPDIMDELGRLATAFSEKVNSLQSQGLDLNGNVGQDIFTDVNSERVAKSRVTAGSQS 343

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDG 256
              ++  I  ++ ++     + Y      + +     +     ++      +   + +  
Sbjct: 344 KADVAVYIDDTSALKGGEYGLKYDGSDYVVTKPDGETVKVSTNSAGNAFYLDGMRVEVRN 403

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
                 +    P     A +Q+          Q  E +       +    +A        
Sbjct: 404 PPELGEKLLLRPTRNFAAQIQMETKDPRDIAAQSYEASTTFAKGSAGFKILAAGQLREFE 463

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
           + ++   +       +G               +       ++   + N K  A       
Sbjct: 464 VIVSPKGEQFAVTDPKGNILMQPQPYPPEGPVTINGTTFELTSGAVANDKFTANLVPSEG 523

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
              +      +       +   T+L+   N         S ++ L   + +      E  
Sbjct: 524 DNGNLRKLQDLQTGKILNDGESTILDLYHNLNTNTGLKASTANRLSDIATLEKESAQERI 583

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++  GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 584 ASVSGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625


>gi|327193059|gb|EGE59971.1| flagellar hook protein [Rhizobium etli CNPAF512]
          Length = 434

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/481 (10%), Positives = 112/481 (23%), Gaps = 48/481 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    I             +                    +   E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+                           + ++     +      +     
Sbjct: 121 GFQLMGYSYDSG-----------------------SPAVVVNGFDGLVPVNVNQDGLTAI 157

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            + S     +     +V     + +   +      +   V       L   V  D  F K
Sbjct: 158 ASTSGVFKGNLDSNANVAPVAPATLPSANLATTTTDTKKVSMVAYDRLGNKVMYDFYFTK 217

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                    + P       V              A+ +  ++      +        +  
Sbjct: 218 TAVAAAPPPAPPAAAATWEV--------------AMFRNANAATGGTTSFPYSAGGAVGT 263

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                D                     D    Q I+       Q  +  S        + 
Sbjct: 264 GSITFDRDGKLLTGGAINIT-------DGVTGQTIAMDFSGLTQLGAAFSGTGTPNGQAA 316

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 317 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 373

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 374 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 433

Query: 480 K 480
           +
Sbjct: 434 R 434


>gi|313901443|ref|ZP_07834901.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313468293|gb|EFR63749.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 406

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/478 (8%), Positives = 114/478 (23%), Gaps = 72/478 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   I  NI N +   Y                         +
Sbjct: 1   MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGYKSSRVTFK----------------EL 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F++ L   S+  G  R               +         +  +    +  + N     
Sbjct: 45  FNQTLRGASAPAGPAR------------GGTNPIQIGLGTALGGIDVIHQ--AGNPQVTG 90

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   +    +      + +         D   + E  + N              +     
Sbjct: 91  VVTDMAIQGDGFFVLQDATGGYAYTRAGDFRLDAEGYLVNADGLRVLGWQAQGGVLPARD 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           + +     +     +  + S  +  S+ +          +    +++++          +
Sbjct: 151 ALNLGAVRVPVDLAVPAQASTRVTWSSNLDATAPTSSTLTQAIDVYDSLGNPHTLIFTFT 210

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T +++ +         +++ GS         LL         +                
Sbjct: 211 RTGSNQWSWNAAAAADPATSLGSGTLTFSSAGLLTAGSPGTVNY---------------- 254

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          ++       QY   PS             
Sbjct: 255 ----------------------SPPGADRMTLTVDFAGLTQYAG-PSTAEATADGYPAGQ 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     +   + +   +      +A       L    R+   + E N S    + 
Sbjct: 292 LTSFSVDASGTITGTFSNGMTQPIAQVALAAFANPAGL---LRDGNLYWESNNSGVARIG 348

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    ++        V+L  E   +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 349 EAGTGGRGSVTPGALEMSNVDLSREFVDMIVTQRGFQANSRVITTSDEMLQELVNLKR 406


>gi|218135315|ref|ZP_03464119.1| hypothetical protein BACPEC_03220 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990700|gb|EEC56711.1| hypothetical protein BACPEC_03220 [Bacteroides pectinophilus ATCC
           43243]
          Length = 606

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/388 (9%), Positives = 104/388 (26%), Gaps = 20/388 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PEN 49
                  +   +A     +   N+ N + K Y R+    + +                  
Sbjct: 6   TGLYVGSSGLRSAQTALNTTAHNLANVNVKGYTRQQVALSSAEYFKIGQTITQDKSYGVG 65

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V  +  R    ++ D      +  +G            E +   +    +    +  L++
Sbjct: 66  VDTLAIRRVRDDLIDAAYRQENGRLGYYSTQYDAVVEIESLFG-ELNGVTFEDSLKDLKN 124

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           ++   S      I    +I  +   +    +  + ++  +   + ++   +  +      
Sbjct: 125 AINELSCEPESTIKRSALIQMSTTFIDRAGSIYKGLKDYQTTLNTKVSNTVDRINELGET 184

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           ++ +N  I     S   A+D  DQRD  L ++S    ++    +N  ++V     + +  
Sbjct: 185 ISSLNKKITQVELSGERANDLRDQRDKALDELSAYAKVTYQETDNKTLLVTLEGFSFVTS 244

Query: 230 TVPRDINFEKMNSYTVTSESNPIFID----GVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                +  E ++   +       F +             +    G++K LL  R +    
Sbjct: 245 FGVNKMGTEDIDGTGLLRPVWEAFNNRAVFNDFEEITAINNNDIGELKGLLLARGNTTAD 304

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           + +                     +                 + +   ++    +     
Sbjct: 305 YTDVPVRPEAKDYAGGDTDPQYLADYAQYEKDAEYYNKYIEPSVILSTMAGFDKLVNGIV 364

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
           ++ + +    +                 
Sbjct: 365 TSLNDILCPQTTYDSATKLTYTDNNGNT 392



 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 76/308 (24%), Gaps = 5/308 (1%)

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
              N    +               D   Q +++        ++      Y      L   
Sbjct: 297 ARGNTTADYTDVPVRPEAKDYAGGDTDPQYLADYAQ---YEKDAEYYNKYIEPSVILSTM 353

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA--LLQIRDSVVPIFQN 288
              D     + +            D     +   +     +I     +   D        
Sbjct: 354 AGFDKLVNGIVTSLNDILCPQTTYDSATKLTYTDNNGNTKEIPGCEEITNADGSKTYRYK 413

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            LD+    +    +E       S      +I   +   D  +    ++    +     N 
Sbjct: 414 VLDKEKSSVGMDDNETMGTELFSRKNTERYIKINVNGEDMYVFNTQNQFGSDSDYTLGNI 473

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                     +    + KN  G                              + +  + +
Sbjct: 474 EVNPTAAQHKELIPLSKKNDGGEDMDKAMELLEAWNVKFAAISPSKYAKEDFMSFYDSVV 533

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +         +      + +        T  V+ +EEL  +IK +Q+YN +++ I   
Sbjct: 534 ANVATTGEVLKGMVNTQSSMADGYDSQRMMTESVSSEEELQNMIKYQQAYNAASRYINVI 593

Query: 469 DKMLQTLL 476
           D+ML+ ++
Sbjct: 594 DQMLEHIV 601


>gi|303240279|ref|ZP_07326798.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2]
 gi|302592189|gb|EFL61918.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2]
          Length = 439

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/480 (8%), Positives = 106/480 (22%), Gaps = 43/480 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +       +   I  N+ N +   Y                          
Sbjct: 1   MMRSMFSGVSGLRAHQTKMDVIGNNVANVNTVAYKSGRVTFQEVFS-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   + A            ++  +       ++ T   S  R        N ++  
Sbjct: 47  ---QTIKGAGAPDTATGRGGTNPMQVGLGIGVSSVDTITTRGSLQRTD------NPTDLA 97

Query: 123 LGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +               +  +      I    +      ++                    
Sbjct: 98  IEGDGFFIVKGGSADTYRFTRAGNFGIDKTGNLVTGSGMNVYGWQAYTRETDGTYNYDTE 157

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                 + + D  +   + I+     S++   N D    +         V   +     +
Sbjct: 158 NPIEPINLYSDIPNKNKRMIAAKATTSSVFAGNLDASYESLGSGASAGNVQFSVPMTVYD 217

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S   +   N       V SS                   S    F ++   +A       
Sbjct: 218 SLGNSYSINVDLWKISVGSSGSEWNWAIDTGSGSTASSASGTISFDSEGQIIASG----- 272

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                            I+    +        +         Y ++ S            
Sbjct: 273 -----------TSVNPAISIIPPESVGSEPIDVLFDFSKLTMYSADSSAKPTSVDGYSTG 321

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS-HD 420
                ++     +   Y +   +      +A       L +   N   ++    S     
Sbjct: 322 TLVSFSIGSDGIITGIYSNGQQQPLGLIALASFENPAGLQKSGNNM--FIPTTNSGDFKK 379

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                      ++        V+L  E + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 380 GVKAGSEGVGTLNPGTLEMSNVDLSTEFTDMIVTQRGFQANSRIITTSDEMLQELVNLKR 439


>gi|114320057|ref|YP_741740.1| flagellar basal body FlaE domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226451|gb|ABI56250.1| flagellar basal body FlaE domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 430

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 113/483 (23%), Gaps = 65/483 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRS- 57
            F  +    N A  +      NI N+    +                    + +      
Sbjct: 2   SFGTSLTGLNAAQSELNITGDNIANSSTWGFKESRPEFADLFASSNLGVTGLAIGQGVRL 61

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +           +++      + F  L +         +         +   E + 
Sbjct: 62  QNVGQQFSQGQFDFTENSLDLGISGKGFFRLSD-------DGDISYTRSGAFQLDREGWI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +   L     D    +V                 D + EL +          T    
Sbjct: 115 TNSAGKRLTGFAADGDGNIVG----------------DGQQELRVETGNVAPEATTEARI 158

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  ++      LD  D L                    V    D  T  E      
Sbjct: 159 QANLNAGAEIPPAYTLDADDRLADFDQLEWVGPDENNPVPGAVFDPRDTATFNE----ST 214

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +    +S      +N  FI G        + V              V+   Q Q      
Sbjct: 215 STTFFDSLGRQHTANFYFIKGNDNDWYVHTEVDG-----------EVLNNGQPQPISFGP 263

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +   +                  D  + L +         +    Q+ +  +      
Sbjct: 264 NGLIEGNA---------------TFDYTRALADAEDLDFELDLESLTQFGTPFAVSDITQ 308

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                  ++  +++    +   + +  ++      V    +   L         W+    
Sbjct: 309 DGFAAGEFSSLDVSEDGTIFARFTNGQSEVLGRVGVTKFPSQENLQPVGD--TEWVATFE 366

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +    +       F  I         V++ E+L  +I  +++++ + K+I   D++ Q +
Sbjct: 367 AGEPVVGTAGTSDFGSIESGALEQSNVDISEQLVKMIVAQRNFSANAKMISTEDQITQEI 426

Query: 476 LEG 478
           L  
Sbjct: 427 LNI 429


>gi|304570583|ref|YP_388203.2| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 547

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/554 (9%), Positives = 115/554 (20%), Gaps = 81/554 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL A      +      ++   +  NI N +   +                    + + 
Sbjct: 1   MSLTASMWTGISGLLAHGERMNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   +   +         + A       + F A+     +      +        R 
Sbjct: 61  GRGVGIGTIYGDFSQGSFETTTEATDLAIGGRGFFAV-----SPKGEETAYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVID-----------------------------NAEEVVQNFNT 140
             E Y  +    +L    I+                                        
Sbjct: 116 DKEGYLVDPHGYVLQGWQIETPRPSLATSTAGSVSSTSKIKGAGVPKDIQLPGFTAEPKH 175

Query: 141 SAREVQKIRADADKEIELEISNLRRF--------------LSELTVVNDAIKFKTASKHD 186
           ++        D     +   +                   LSE +               
Sbjct: 176 TSNVTIISNLDDASGGDNSTNAANPMFALFNSWDGTAEPPLSENSFAYQTTIKVYDEGGT 235

Query: 187 AHDFLDQRDVL-----------LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           AH+     D +            +    I+ +       +   +           +   +
Sbjct: 236 AHNLTIYYDQVASDTISGEGSGQKHWEYIVTMDPADEQRSINGIDFKGTPAAGMLMAGTL 295

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS---------VVPIF 286
            F+        S   P       +                     +         V P  
Sbjct: 296 TFDSSGQLIDQSAFTPGSSATGSMKDLSNWNPTTFSTNGYPMFVANFSGISNASYVTPNP 355

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                     L       DP    S  V    +          L             +  
Sbjct: 356 DPAAQPYIMELNLGLKNSDPSTWASAGVSNASLVGTNVANLPSLGNQAERQSSATTSFSG 415

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + S                  +     L   Y +    +     +    +   L     N
Sbjct: 416 SSSTPTRYQDGYTFGFLQNVTVTRDGILQGRYSNGAVLDLYQITLYDFQSKDNLRREGGN 475

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
                E N S        +   +  ++ +      V+L +E   +I  ++ +  ++K+I 
Sbjct: 476 LFS--ESNASGLAAPGPANANGYGTVNSNSLEQSNVDLAKEFVNMITTQRGFQSNSKVIT 533

Query: 467 FTDKMLQTLLEGVK 480
            TD ML+ +++  +
Sbjct: 534 TTDTMLEVVIQMKR 547


>gi|309788151|ref|ZP_07682757.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1617]
 gi|308924003|gb|EFP69504.1| flagellar hook-associated protein FlgK [Shigella dysenteriae 1617]
          Length = 366

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 121/364 (33%), Gaps = 19/364 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     S +
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSPQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQE 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                     +S   +                    +  G +  +L  R   +   +N L
Sbjct: 239 STARQLAAVPSSADPSR-----TTGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 293

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     ++    G       K    +  +   +    +    ++   
Sbjct: 294 GQLALAFAEAFNSQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGDTVTDASAVL 353

Query: 351 LRDG 354
             D 
Sbjct: 354 ATDY 357


>gi|163742565|ref|ZP_02149951.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis
           2.10]
 gi|161384150|gb|EDQ08533.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis
           2.10]
          Length = 440

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/489 (11%), Positives = 139/489 (28%), Gaps = 65/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M++ +  N         + + ASI  NI N+    Y R  T       + S    +    
Sbjct: 8   MTISSSLNAGVAGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMSSSGGTYSAGGV 67

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPTHYISKLRDSL 111
           R+ N  + D+   L + S+A       +    +  M   +    N        +  R + 
Sbjct: 68  RTTNVRLIDERGPLVSTSNATDLAVRGRGMLPVTSMNEVETGAANPQMMLTTTASFRTNA 127

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +      S  +L      +   +      ++  ++ +R + +K      + +   ++   
Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIPPYARDTSDALEPVRFNVNKLSGEPTTEMSLGVNLPA 187

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              ++    T+       + +       +I  +  +     +N   ++ T   T      
Sbjct: 188 TATESTAAGTSENLSIEYYDNLGKSESLQIEFVPTVPATGESNEWTMIITDTATGSTPIG 247

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
              + F                 D    S    +AV      A      S++        
Sbjct: 248 EYTLTF-----------------DDNRTSGGALNAVAATTGGAYDAATGSIIVPVAGGPM 290

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           E+   +IG  +    ++                                           
Sbjct: 291 EINIGMIGDDNGLTQLSDTFAPASISK--------------------------------- 317

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 +    +    +     +  +Y    ++     P+  +     ++   R    ++
Sbjct: 318 ----DGAPVGNFTGVEIDEAGYVHANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQ--TYM 371

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + S S+ L    +     I          ++  EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 372 PSSESGSYFLWNAGEGPTGDILGYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEM 431

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 432 LQETTNIKR 440


>gi|157376210|ref|YP_001474810.1| flagellar hook-associated protein FlgK [Shewanella sediminis
           HAW-EB3]
 gi|157318584|gb|ABV37682.1| flagellar hook-associated protein FlgK [Shewanella sediminis
           HAW-EB3]
          Length = 638

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 124/404 (30%), Gaps = 24/404 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+  + N A+     +  Q A    NI NA+ + Y R+    +                
Sbjct: 1   MSM-NLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLESQRAGSEFYGSGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +    +   + L    ++  + +   +  +  + + +      +    ++     
Sbjct: 60  YISDVKRIYNDYAARELRIGQTSASEAQTTHTKMSELDQLFSQ--IGKAVPQGLNDFFAG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L S S    +  +  +V+ +A ++  + N     +       + +I      +     EL
Sbjct: 118 LNSLSDLPDDIGIRGSVLGSAGQLATSLNQMQSHLDGQMKQTNDQIVGITDRINEISKEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +             LD++D L+Q++S+   ++ I  +     V       L   
Sbjct: 178 GHINQELMKSQGEDAQ---LLDKQDALIQELSQYSEVNVIPLDTGAKSVMLGGAVMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                              + I       S     +   G+I AL + RD  +   Q +L
Sbjct: 235 EVSMAIGTTPG--DPFGRESQITASIGTHSQVIDGSKLGGQIGALFEFRDETLVKAQQEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +++  +  +F++      +     G  I   I D    + +  + +             
Sbjct: 293 GQLSLGVADAFNQAQKEGFDLNGEVGKDIFKDINDPTMSVGRVGALSSNTGTA------S 346

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           LR     S +   N   L+          D+   N     + G 
Sbjct: 347 LRVNIDDSGQLSGNSYELSYTAPATYELTDTLTGNVTPLTLNGT 390



 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/358 (9%), Positives = 97/358 (27%), Gaps = 7/358 (1%)

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             + +   +  V   FN + +E   +  +  K+I  +I++    +  +  ++      + 
Sbjct: 288 AQQELGQLSLGVADAFNQAQKEGFDLNGEVGKDIFKDINDPTMSVGRVGALSSNTGTASL 347

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             +         +      +             ++   T +GT L       I+ +    
Sbjct: 348 RVNIDDSGQLSGNSYELSYTAPATYELTDTLTGNVTPLTLNGTQLDGAGGFTIHIDSGAL 407

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                                 +        A     D+                  +  
Sbjct: 408 ADGDKFEIRPAAGAAAGIGVVMTDPEGIAAAAPKITPDAANSGNTEIEMVSIDNRGAAGF 467

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                    E        + + D         +  +  +         +    + + +F 
Sbjct: 468 PLTGSELTFEINTAANTFE-VFDATGASLGAAAAFVPPSISAYGFTFDVTSTAAATDRFT 526

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +++    G         +S   + + +         TL +    +   +      +    
Sbjct: 527 FDLSFAPGDNT------NSVAMSKLSETKLMNGGTSTLTDVYEGTKLSVGGKTKAAEVAM 580

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +Q V++       +  GVN+ EE + L++ +Q+Y  S +++    ++  TL    +
Sbjct: 581 GSAQAVYSQAYSRVQSESGVNIDEEAANLLRFQQAYQASARIMTTASEIFDTLFNSTR 638


>gi|237653583|ref|YP_002889897.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T]
 gi|237624830|gb|ACR01520.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T]
          Length = 450

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/484 (8%), Positives = 106/484 (21%), Gaps = 47/484 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
            F +  +  + +S+    I  N+ N +   +     + +         +           
Sbjct: 2   SFQQGLSGLSVSSKALDIISNNVANTNTIGFKTGSAIFSDVFAASLTGSISGKQVGVGAT 61

Query: 57  --SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +  +      L   ++ +        F                      +     E +
Sbjct: 62  LGAVRQTFTQGNLTTTNNPLDLAINGDGF------FVVSRENGPDVYTRNGQFELDKEGF 115

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            +  + + L       +        T    ++ ++        +  S +           
Sbjct: 116 IRTPTGERLKG---FQSPVTPGALPTPIGGLKDVQVPIVGSQPMPTSRV----------- 161

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                     +   + L       Q              N       +  T++       
Sbjct: 162 ------EIGGNLDANDLSAAQRYPQLFGSTFTFPLPAGENWQDARTYNFSTSIKAYDSLG 215

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            + E    +   + +    ++    +    ++V  G    +        P     L    
Sbjct: 216 KSHELTYYFAKVTPTPNDPVNTNENTWKVFTSVDGGYPLGVGTDGSIEDPSVIWSLTFNE 275

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
           +  + +       A                                  Q   +       
Sbjct: 276 KGTVNTPIVGPTAANPLAIPASY--------TPGADRIRFHVDFSDMRQIGGSYLITELT 327

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       ++     +   Y +   +      +        LL    N   W    
Sbjct: 328 QDGYTGGELAGVSVGRDGIVTGRYTNGETRELAQLALQTFRNPNALLSIGNNF--WEATT 385

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S         + V   +S        V L  EL  +I  +++Y  + + I   D++LQT
Sbjct: 386 ESGLTAPSKAGEGVAGVVSAGMIEDANVELTNELVQMIVQQRNYQANAQSIKAQDQVLQT 445

Query: 475 LLEG 478
           L+  
Sbjct: 446 LVNL 449


>gi|315179405|gb|ADT86319.1| flage3llar hook-associated protein FlgK [Vibrio furnissii NCTC
           11218]
          Length = 644

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 118/333 (35%), Gaps = 17/333 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGAQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRRYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++    +R  +    +   + +           +++  DS+++
Sbjct: 63  NVRRSWDQFAVKELNLATTDYSFKRDNEENLDMLSKLLSSVASKK-IPENLNEWFDSVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A  + QN N     V++     +K +++ I  + +   E+  +
Sbjct: 122 LADTPNDVGARKVVLEKAGLISQNMNDFHETVRRQFDVTNKGLDVGIERINQLAVEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +DQ + L+ ++S+   ++   R N     ++  +G TL     
Sbjct: 182 QRLMMRTP---GPHNDLMDQHEKLVAELSQYTKVTVTPRKNAEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  +       +  GKI AL+ +RD  +P   +++  
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMVEGKALKPITARDI-GGKIGALMDMRDKHIPGLLDEIGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           +A       +       +     G  I   +  
Sbjct: 297 LATSFSYEVNRLQHQGLDLRGDIGADIFTDVNS 329



 Score = 90.1 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 6/205 (2%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                        +     +  V     +    +    ++  G  +       ++   + 
Sbjct: 445 GSATFHIDQAGDVKEFEAYVVPVKDSDGNPTGNMQVRVQDKSGKVLLTQPYAFEDNQEEL 504

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
             E    +   +S    L  G     KF  N+    G    +    +  +   + D    
Sbjct: 505 TLEIPKQDSDGKSTIFTLSRGAIADDKFTANLVPSDGDNGNLRKMINVQSNKTVDD---- 560

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                T++E   N         S +  L   +++         ++  GVNL EE + ++K
Sbjct: 561 --KKSTIIELYHNLNTDFGLKLSTASRLTDVARLEKESAESRIASVSGVNLDEEAANMMK 618

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            +Q+Y  S+++I   +    T+L  
Sbjct: 619 FQQAYMASSRIIQAANDTFNTILAL 643


>gi|126738557|ref|ZP_01754262.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6]
 gi|126720356|gb|EBA17062.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6]
          Length = 446

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/489 (9%), Positives = 125/489 (25%), Gaps = 65/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M++ +  N   +  +  +   A+I  NI N+  + Y R  T            +  +   
Sbjct: 14  MTISSALNAGVSGLSANASSLAAISDNIANSSTRGYKRIQTDFQSMVVGSKGGSYTAGGV 73

Query: 61  NM-------FDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDSL 111
                        L   ++A       +    +     + + +             R + 
Sbjct: 74  GFDKLRLVDERGPLVGTNNATDLAVSGRGMLPVAALSEVESGNGNPTMMLTTTGSFRTNA 133

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + Y    S  +L     +    V      +A  ++ I+ + ++      + +        
Sbjct: 134 DGYLTTASGLVLMGWPANANGTVDDGPRDTAEGLEPIQYNMNQLTGEPTTEV-------- 185

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   +           D           +     ++                       
Sbjct: 186 TLGVNLPATETEAGGDGDTETLTVEYYDNLGSSQTLTVSF-----------------TPT 228

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                     +  ++  ++   + G    +   S    G + ++  +          ++ 
Sbjct: 229 VPATGSSNEWTMQISDSASGGAVIGEYTLTFDDSRTAGGSLASVTAVTGGAYDATTGKVM 288

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                                                ++  G+        Q     +  
Sbjct: 289 INVDG-----------------------------GPMEIGLGLIGESDGLTQLSDTFAPA 319

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 S+        +     +  +Y    +K     P+A +     L    +    +L
Sbjct: 320 SITKDGSEVGTMVGVEVDAQGYVRANYDSGASKVIYKVPLADMANPNGLKALDKQ--TYL 377

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             ++S S+ L          ++         ++  EL+ +IK +++Y+ + K+I   D+M
Sbjct: 378 PSSQSGSYFLWDAGDGPTGEVASYSMEESATDVATELTDMIKTQRAYSSNAKVIQTVDEM 437

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 438 LQETTNIKR 446


>gi|160878463|ref|YP_001557431.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans
           ISDg]
 gi|160427129|gb|ABX40692.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans
           ISDg]
          Length = 620

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 101/301 (33%), Gaps = 18/301 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MSL++      +    +     +   N+ N + + YVR+ T+   S              
Sbjct: 1   MSLMSSLYVGVSGLQVSQNGLNTTGHNLANVETEGYVRQQTVLQTSQYRTIGQSYISPMQ 60

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                     R       DK         G         +  E +   +    +    I+
Sbjct: 61  LGLGAETAAVRQVRDIFLDKSYRQELGRRGFYDSQYETVSEIENLMG-ELEGVAFQDSIA 119

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
               +L+  +K     +   ++++ +   V+      ++++  + + + +I   IS +  
Sbjct: 120 DFWKNLQELAKEPDSLVKRASLVETSVGFVERSENLFKQLRDYQLNLNLKITNTISRINE 179

Query: 166 FLSELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              +++ +ND I    +++   A+D  D R+ LL ++S++I I+     +  + V  ++G
Sbjct: 180 IGDQISSLNDRICAYESNRVEHANDLRDTRNKLLDELSQMITITYRENADGRVTVN-AEG 238

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                            +     + +    +   +  N    +P       +++ +  + 
Sbjct: 239 VPFVTEDLTHHMGSMTVTQIRQRQLDEDEFNSTGMMENSDMLIPIWPTYGNVEVFNRDLI 298

Query: 285 I 285
            
Sbjct: 299 P 299



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/389 (10%), Positives = 114/389 (29%), Gaps = 13/389 (3%)

Query: 92  ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                    TH++  +  +     +   ++     +++N++ ++  + T        R  
Sbjct: 238 GVPFVTEDLTHHMGSMTVTQIRQRQLDEDEFNSTGMMENSDMLIPIWPTYGNVEVFNRDL 297

Query: 152 ADKEIELE-ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGI 207
               ++   I +L+  +               + +  +   +  D+   + +   +    
Sbjct: 298 IPNPVDNSDIGSLKGLILARGTKVAKATDIPIAPNKDNYLDEFGDLKEDEYNLALKDYKE 357

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           +    N              ++ +   I  +  +      E        + +S+      
Sbjct: 358 AVKTYNKTIEPSIVMSTQAQYDQLIHGIVTKINDILCPNKEVVIAAGTTIQLSNGDTYTY 417

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            K  +  +    ++ + I      E+                 +     L      +D  
Sbjct: 418 DKDTVIKIFDDENAPIGINGEGGTELFSRKSMPRYMDYQEITLANGDTILAKIYNEEDEA 477

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           N         + VN +   + S +    S +                      ++ + F 
Sbjct: 478 NNYSLYTVGELVVNQEMIEDKSKIPLSQSSNTGDY--------DIKTTERLLKAWQEPFA 529

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
                 +  +  + +Y    IG +       H +    + +   I     + +GV   +E
Sbjct: 530 TLSPNTLTKSN-INDYYNALIGGIATTGERYHTIVKSQEGMVTSIDNQRQSVLGVASDDE 588

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           L+ LIK + +YN + + I   D+ML+ ++
Sbjct: 589 LTSLIKFQHAYNAAARYINVIDQMLEHIV 617


>gi|308050372|ref|YP_003913938.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799]
 gi|307632562|gb|ADN76864.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799]
          Length = 468

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/485 (9%), Positives = 119/485 (24%), Gaps = 31/485 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN + +  N A +   +   NI N +   +            N             V  
Sbjct: 2   SFNISLSGLNAAQKDLNTTSNNIANVNTIGFKESRAEFADVYNNSLFTNSKTNVGAGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++A+        F      +   D             + +  ++ 
Sbjct: 62  AQIAQQFHQGALSFTNNALDLAINGNGFFVTNSELGGQDFS----YTRAGAFKLNDSNFM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    ++    V     ++ + VQ  +         +I+      +    +N 
Sbjct: 118 VDSQGNYLMALPVNADGSVQSVSLSTTKPVQIPQTAGQPAATSDINMSMNLPANDVEMNP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT--SDGTTLFETVPR 233
                           D  D      +  + I   +   +    Y     G +L      
Sbjct: 178 -------------ANFDPTDPTTYNTATSVTIYDSLGEPHIQTTYFVKPTGGSLNNNNQW 224

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  N      +      D      +             +        +        
Sbjct: 225 VCFTTVDNQPVDIWDVAGGAKDSGQWGQDTNGDGVADVTNNAVGASGQTGFVMSFDDVGG 284

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 +  +   +  +  +        G+        Q ++       QY +       
Sbjct: 285 YIGSDPALIQTQALGLDDPSSTTPGDGAGVIGPGADGSQRLTLKFNNPTQYAAPFEVTEL 344

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
               +         +     +   Y +   +      +A  +    L +       W + 
Sbjct: 345 SQDGATVGRLTNVEVTAEGLINATYSNGTQQALGKVALARFSNEQGLTQIGN--TSWKQS 402

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           N S    +   +   F  I  +      V+L  EL  LI  ++++  +++ +  ++++ Q
Sbjct: 403 NDSGEPLVGEPNVGAFGSIRSAALEQSNVDLTTELVDLISAQRNFQANSRALDVSNQLSQ 462

Query: 474 TLLEG 478
            +L+ 
Sbjct: 463 NILQI 467


>gi|260466603|ref|ZP_05812791.1| flagellar basal body FlaE domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029609|gb|EEW30897.1| flagellar basal body FlaE domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 418

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/481 (9%), Positives = 107/481 (22%), Gaps = 64/481 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + ++   NI N+D   Y R     +      T     S   
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    +     +       +      D                 +    N +
Sbjct: 61  TTTIRQAVSDPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDAQGRLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L      N             E   I             +    L            
Sbjct: 121 GFQLMAYSYANGTPAATVNGFEGLEPVVIADQGLTATPSTAGSFSGNLPAGATAVATANL 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             A+   A                                 +      ++ +      + 
Sbjct: 181 PGANAATAQ------------------------------YTSKSSMVAYDNLGNKKLLDV 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T T        D    ++        G +       D+           ++  +  
Sbjct: 211 YFTNTGTGTWQVAVFDQSKATAGTSFPYTGGALGTANLTFDTTTGKLTGTPTSVSFTV-- 268

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                             ++  +    Q  +  +      + + 
Sbjct: 269 -----------------------------PGGASLNLDLSTLTQLGTGFTVSDAQVNGNA 299

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +   ++    +   Y D  +K     P+A + +   L     N         S + 
Sbjct: 300 PSAIDKVQISKDGTIYAQYKDGTSKPLYKIPLADVQSPDQLKALPGNVYAQ--GTDSGAV 357

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +   ++     I         V++ EEL+ +I  ++SY  ++K+      ++  L+   
Sbjct: 358 RVGFANEGKAGSIISGALENSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMDVLVNLK 417

Query: 480 K 480
           +
Sbjct: 418 R 418


>gi|222112272|ref|YP_002554536.1| flagellar basal body flae domain-containing protein [Acidovorax
           ebreus TPSY]
 gi|221731716|gb|ACM34536.1| flagellar basal body FlaE domain protein [Acidovorax ebreus TPSY]
          Length = 531

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/537 (9%), Positives = 131/537 (24%), Gaps = 72/537 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55
            F +  +  N +++    I  NI N++   +    T                 +   V  
Sbjct: 2   GFQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L    +++        F  L+          +         +       
Sbjct: 62  SAIAQQFNQGNLTVTGNSLDVAINGNGFFTLQ------MPDGSRAYTRAGNFKLDNVGNV 115

Query: 116 KNLSEDILGKTVIDNAEEVVQN-------FNTSAREVQKIRADADKEIELEISNLRRFLS 168
                  +    ID    +  +       F T+A    +          L+         
Sbjct: 116 VTNDGAQVMGYPIDPVTGLRTSSTAVPLTFPTTAPIPARQTTAIKTAFNLDARTPNAKGD 175

Query: 169 ELTVVNDAIK-----------------------FKTASKHDAHDFLDQRDVLLQKISEII 205
                  A                         +   +  +  D  +Q D L      + 
Sbjct: 176 PGATPPVAATPRTTYGTSLNVYDSQGVATPLSFYFEKNGANTWDIYNQLDDLTTTPPTVP 235

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT----------------SES 249
            I+  +  + +  V  +           D    + + +  +                 E+
Sbjct: 236 AITGRLIADKNGAVAATLEPVATSVANADPALTQKDDFPTSFTYRFYGPDDQGVYAIRET 295

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ--------LDEMARVLIGSF 301
              F +         S  P   + A  +++D++V              + ++      + 
Sbjct: 296 TLSFTNPEDAWDFTYSDAPTNSLVASARLKDNLVDYAGGTSPAGGTFGVADLTDAPAAAK 355

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
              +     + +                    ++  +    Q+ +  +            
Sbjct: 356 QSFELALMVNPSPANPNSPTAPGSNPAPGSYPVTLDLNKVTQFGTKFAVSELSQDGYTSG 415

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                N+     ++  Y +   +      +A       L     N   W+E   S    L
Sbjct: 416 ELTGINVENNGMIMTRYSNGVTRAEGQIALASFRNTQGLAAVGGN--NWVETYESGQPVL 473

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +   F  +         V+L  EL  ++  +++Y  + + I   D+++ TL+  
Sbjct: 474 GAPTDGNFGALRAGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 530


>gi|269961605|ref|ZP_06175967.1| flagellar hook-associated protein 1 [Vibrio harveyi 1DA3]
 gi|269833646|gb|EEZ87743.1| flagellar hook-associated protein 1 [Vibrio harveyi 1DA3]
          Length = 637

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 130/395 (32%), Gaps = 26/395 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++     +L                 +      +++  D++++
Sbjct: 63  NVRRSWDEFAVKELNLSTTNYA-SKLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+ +    N     V++    A+K +++ I  + +   E+  V
Sbjct: 122 MADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVANKSLDMGIERVNQLAVEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L++++SE   ++   R N++   V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    S  V      +   G + +         GKI ALL++RD  +P   ++L  
Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---------LDNKLCQGISETICVNPQ 343
           +A       +       +     G  +   +              +    ++  I     
Sbjct: 297 LATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAVYINDISA 356

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            +     LR  G        N + +    D  N  
Sbjct: 357 LKGGEYSLRYDGDSYAVTKPNGETVKLNTDAGNAL 391



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +    + +A         +   +           +    L  G   + KF  N+    G 
Sbjct: 476 DTKGNVIMAPQPYPPTGPVSVSLPSNHPAYKNGGATVFELSAGALANDKFTANLVPSEGD 535

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              +    +                  T++    N    +    S +  L   +Q+    
Sbjct: 536 NGNLRKMQNIQTDKK------MNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEA 589

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             E  ++  GVNL EE + ++K +Q+Y  S++++   +    T+L+ 
Sbjct: 590 AQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636


>gi|238788320|ref|ZP_04632114.1| Flagellar hook-associated protein 1 [Yersinia frederiksenii ATCC
           33641]
 gi|238723566|gb|EEQ15212.1| Flagellar hook-associated protein 1 [Yersinia frederiksenii ATCC
           33641]
          Length = 550

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/550 (10%), Positives = 146/550 (26%), Gaps = 80/550 (14%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56
            N A +  + A    +++  NI N     Y R++T+   S             V V    
Sbjct: 1   MNTAMSGLSAAQYALSTVSNNISNYQVAGYNRQNTIFAQSGGTLSPAGFVGNGVAVTGVN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            E  +     L +  +            +  + + ++   +N+ +  +     +L++   
Sbjct: 61  REYNSFITNQLRSAQTQSSGLTTYYQQVSQIDNLLSNT--SNNISTTMQDFFSNLQNLVS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA------------------------ 152
           N  +D   KTV+  AE +V  F  + + ++ +                            
Sbjct: 119 NADDDAARKTVLGKAEGLVNQFQNADKYLRDMDNGVNQKITESVSQINNYADQIAKLNDQ 178

Query: 153 --------------------------DKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                                     ++ + + ++        ++  N     +  S + 
Sbjct: 179 ITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVSFANGLPLVQGPSSYH 238

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-------FETVPRDINFEK 239
                   D     I    G  T +  +   ++  S G TL            +      
Sbjct: 239 VEAIPSSADATRLAIGYKYGSGTTLEVDESRLMTGSLGGTLKFRSEALDSARNQLGQLAL 298

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + + +  ++    F       ++  S      +K      D+ + +      ++      
Sbjct: 299 VMADSFNTQHKAGFDANGDAGTDFFSFADPTVLKNARNQGDASLTVAYTDTSKVQASDYS 358

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
              +         +      A+ +KD          + + V     +  +  +D  +V  
Sbjct: 359 VEFDGTDWQVTRLSDNTKVPANPVKDASGNTTGLSFDGVVVTIDNGTTGAESKDKFTVKT 418

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-----------GINTNVTLLEYARNSI 408
                        D           +   D V             +    T        +
Sbjct: 419 VSNVAANFQVAITDSSKIAASGSKDSGASDNVNAQALLDLQTQKLVGGKATFSGAYAGLV 478

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +    + +         +   ++    +  GVNL EE   L + +Q Y  + +++   
Sbjct: 479 SNVGNQTNTAKTNSAAQANIVTQLTAEQQSISGVNLDEEYGDLQRFQQYYLANAQVMQTA 538

Query: 469 DKMLQTLLEG 478
             +   LL  
Sbjct: 539 STLFSALLGI 548


>gi|258512522|ref|YP_003185956.1| flagellar hook-associated protein FlgK [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479248|gb|ACV59567.1| flagellar hook-associated protein FlgK [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 481

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 63/495 (12%), Positives = 160/495 (32%), Gaps = 36/495 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
             +      +      +  + +  NI+NA+   Y +       +                
Sbjct: 5   TFSPLYIGLSGLQAMQEAESVVGNNIDNANTPGYAQETVNFAENVPYPPEPGYGPLVAGQ 64

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
             + V+V +   +    +D     + S         S     E +  ++  +NS  + + 
Sbjct: 65  LGQGVSVQSVARQASWFYDVQDRQNQSTYQFYTTRSSVLTQIEGIL-NEPSSNSLQNAMD 123

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   + ++ S + S+    + VI     V Q FNT   ++++++ +    +  ++    +
Sbjct: 124 QFFSAWKTLSTDPSDTAARQAVISQGNVVAQTFNTVIEQLEQLQQNLVDTVNSQVQQFNQ 183

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
           +   L  +   I+       + +  LDQ+  +L K+S++  ++     +  + V   +G+
Sbjct: 184 YAQNLLSIQQQIQTVQQYGENPNQLLDQQAQILDKMSQLANLNLSQNADGTVNVSIGEGS 243

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     N  ++     T++S  +        S        G ++    +       
Sbjct: 244 ----------NSVQVLKEDPTTKSITLTQVSSSKLSAITGGQMAGNLQGYEDV-----AQ 288

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               L+        + +++  +A   +    L  +           Q ++    ++P   
Sbjct: 289 LLMNLNAFLNAFAEAVNQQSQVAL-FQTPVNLDTSASNGVFSGGQVQVVATANDLHPIPS 347

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            + S                   AG      +  +             I    TL +   
Sbjct: 348 LDASGDNSTELAVVNLQATPLQNAGVSTSYAYTYNDPWSGSSSSASFEITG--TLDQALA 405

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    S        +  +    ++   +  GV+L E+ S++I  + +Y  + K I
Sbjct: 406 SMVSNIGMTASGVTSSEATANALLQQSTQLRQSISGVSLDEQASYMISYQNAYAAAAKYI 465

Query: 466 MFTDKMLQTLLEGVK 480
                M+Q+LL  V+
Sbjct: 466 ATFQTMMQSLLNMVQ 480


>gi|242278417|ref|YP_002990546.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens
           DSM 2638]
 gi|242121311|gb|ACS79007.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens
           DSM 2638]
          Length = 583

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 133/443 (30%), Gaps = 33/443 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENV 50
           MSL    +  Q    NA     +   NI N++ + Y R D +                  
Sbjct: 1   MSLTNTLSIGQRALANAQVSINTTSNNIANSETEGYQRADAVYDSLGNINSYGNSLGTGA 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +V  R+      +K       ++        + +  + +  +            +   +
Sbjct: 61  DIVAIRANWDRFIEKQFLIALGSLSCSEAQLGYLSQMDSVF-NQSEEQGLAAAQDEFLSA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
               S         + ++  AE ++   N+S  E++ + A  + EI  +++     +  +
Sbjct: 120 WNGLSTYPDSLAEREDLLGEAESLLYGLNSSYSELRDMSASVESEIVDQVNTANELIDSI 179

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            ++N+ I    ++  D ++ +  RD  ++++ E+IG+  +   +    +YT  G  L E 
Sbjct: 180 GLLNEQI----SANPDNYELVASRDQAIRELDELIGVEVLSYEDGSTKIYTETGHPLVEG 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA---------VPKGKIKALLQIRDS 281
                     +  T  +        G +V     S          +  G I  L   RD 
Sbjct: 236 EETHHLAVAYDDDTSKTGLFWENGSGGLVDITPMSDESGDAVSGRITGGSIAGLFITRDE 295

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +    ++LDE A  LI   +         E    +    G++D    L     +     
Sbjct: 296 HIQPTLDRLDEYAAALIWETNRAHSQGAGLEPHTAVEGTYGVEDQTAALSDSGLDFEDRI 355

Query: 342 P---------QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                         NP               +         L      S N +      A
Sbjct: 356 TSGEFTIHTYDADGNPEASITISIDPSTDSLDDIVSNINASLGGSLTASVNADGELAIEA 415

Query: 393 GINTNVTLLEYARNSIGWLEKNR 415
             +++    E +   +     N 
Sbjct: 416 VGDSSFEFGEDSSGFLAAAGINT 438



 Score = 81.6 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 74/271 (27%), Gaps = 6/271 (2%)

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK- 273
            +     S G  L      +  +   +     S+S   F D +                 
Sbjct: 313 WETNRAHSQGAGLEPHTAVEGTYGVEDQTAALSDSGLDFEDRITSGEFTIHTYDADGNPE 372

Query: 274 -----ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                ++    DS+  I  N    +   L  S +    +A  +         +       
Sbjct: 373 ASITISIDPSTDSLDDIVSNINASLGGSLTASVNADGELAIEAVGDSSFEFGEDSSGFLA 432

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                             N     +   ++   + +   +A   +      +      + 
Sbjct: 433 AAGINTFFEGSSAGDIAVNNYVASNPSHLNAGEVGSDGTVASGSNSTAQSINDLLSRDVS 492

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                  T+ TL EY    +  +    S                +E   +  GVN+ EEL
Sbjct: 493 IGEGANATSATLTEYLSAIVSDVGAAASTMETRVTCDTAAAQIYAEQQESVSGVNVDEEL 552

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             L + +Q Y  + ++I  T  M+ T+L  V
Sbjct: 553 VNLTRHQQQYEAACQIISVTRDMIDTVLGIV 583


>gi|291539399|emb|CBL12510.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           XB6B4]
          Length = 613

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 135/444 (30%), Gaps = 36/444 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM------------TTISPEN 49
           S       A +  +       +   NI N   K Y ++                      
Sbjct: 3   STFFGLTIASSGLSAYQVALNTSANNISNVQTKGYSKQQANRVASESIRAYAKYGSMGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VT  + +      +D     + S++G      ++    E    DD  +   +  ++ + +
Sbjct: 63  VTTESVKQLRNQYYDNKYWYNQSSVGLYETKLNYLKQIENYFIDDDSSKGFSTILNTMFN 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L++   N  +    +  I +A+     FN+ A  +  I+ +A++EI+  + N+     +
Sbjct: 123 DLDTLKNNAGDVNTRQQFIGSAQNFATFFNSVASGLGDIQNNANEEIKSTVQNINSIAEK 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218
           +  +N  I         A++  DQR +L+ ++S+I+          +             
Sbjct: 183 IASLNHQINVIEIQGGYANELRDQRALLIDELSKIVPTEAEELPVQNSNDPELPTGANYF 242

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKA 274
                G  L +T   +          V         D        S   G++   G +KA
Sbjct: 243 TVKIGGQVLVDTYDYETLQCVARENKVNQSDMDGLYDVKWEKTGNSFKAGASSMSGTLKA 302

Query: 275 LLQIRDSVVPIF---------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           L  IRD                  +  ++  +    +   P +G        +       
Sbjct: 303 LFDIRDGNNGENFTGEARVIDSKHVKVVSPSITDIEAMTVPESGTLTIYGKDYNYTNFTF 362

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
             +   +  S T  +        S   DG   S     +   +  Y   +N +  SF   
Sbjct: 363 ETDANGKITSYTFELEDALSQQQSNKVDGMQASIGNSVDTMGVPYYMSQMNQFLRSFCSL 422

Query: 386 FIFDPVAGINTNVTLLEYARNSIG 409
           F    + G + +    +Y     G
Sbjct: 423 FNDIMLKGQDLDGNATDYYSFFTG 446



 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 +   +   +  TL                    +      +     S Q S   
Sbjct: 330 VSPSITDIEAMTVPESGTLTIYGKDYNYTNFTFETDANGKITSYTFELEDALSQQQSNKV 389

Query: 269 KGKIKALLQIRDS-VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            G   ++    D+  VP + +Q+++  R     F++      + +     + +       
Sbjct: 390 DGMQASIGNSVDTMGVPYYMSQMNQFLRSFCSLFNDIMLKGQDLDGNATDYYSFFTGADQ 449

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +        N    ++          +     +   +     L   Y         
Sbjct: 450 VTGEEYALGKSDKNNGNTTDCGASSYYKLTASNICVSSICVKDSSKLAAQYKTDTEDGVD 509

Query: 388 ----------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                           +        + +  I  +  +   S         +   +     
Sbjct: 510 KYKLVEDLAKLKSDTVLFRAGNASGFLKCMISDISIDTQQSTIFSNNYTNIQAALETQRM 569

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  GV+  EE   LIK + +YN+S+K+I    ++   L+E
Sbjct: 570 SVSGVDEDEEALDLIKFQNAYNLSSKMISVMAEVYDKLIE 609


>gi|268316347|ref|YP_003290066.1| hypothetical protein Rmar_0780 [Rhodothermus marinus DSM 4252]
 gi|262333881|gb|ACY47678.1| protein of unknown function DUF1078 domain protein [Rhodothermus
           marinus DSM 4252]
          Length = 415

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/481 (9%), Positives = 119/481 (24%), Gaps = 69/481 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   +   +   I  NI N +   + R             +   R+     
Sbjct: 1   MIRSLRTGVSGLKSHQVRMDVISNNIANVNTTAFKRGRAAFNELLGQTLLGVGRTAGGRG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +              L  S  ++    +     N      +    D             
Sbjct: 61  INPSYVG---------LGVSVGSIDVNFAQGALENTGVATDLGINGDGFFVVRG------ 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                  +   + +  N +     ++  ++  +++    +    L    + +  + F   
Sbjct: 106 ------GDRIYLTRAGNFTINRFGELVTNSGLQVQGWAFDENGELQSAALEDVRVPFSAT 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +     + +  R  L  +++    ++         VVY   G      +           
Sbjct: 160 APPKQTENIYVRGNLNAELAAGETVTVST------VVYDPQGKAKTIIIEFTRTSNPN-- 211

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                + N +  DG  +     S                                  +  
Sbjct: 212 ---EWQWNLLDEDGNPLGVTITSG--------------------------------DNLI 236

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDN--KLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
             D                 I +          ++       QY  + +           
Sbjct: 237 TFDTQGNLDPTEALQTFDWDIDNDGTLESFTLNLAGADDALTQYAGSTTATVRDQDGQPP 296

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++     +  ++ + + +      +  +N    L +   N   W   + S    
Sbjct: 297 GSLIGFSINQEGIVELNFSNGYQQKIYQLALGSVNNVNGLQQVGDNL--WSLTSSSGDLA 354

Query: 421 LHMKS-QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L     ++    I         V+L  E + +I  ++ Y  S ++I  +D+MLQ L++  
Sbjct: 355 LGRAGVELNRTVIVAGTLEMSNVDLATEFTDMIVTQRGYQASARIITTSDEMLQELVQLK 414

Query: 480 K 480
           +
Sbjct: 415 R 415


>gi|167644972|ref|YP_001682635.1| flagellar hook-associated protein FlgK [Caulobacter sp. K31]
 gi|167347402|gb|ABZ70137.1| flagellar hook-associated protein FlgK [Caulobacter sp. K31]
          Length = 704

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 123/435 (28%), Gaps = 17/435 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL  + N A +    A      +  NI N +   YVR+    +          V +   
Sbjct: 1   MSLNTILNVATSGMMAAQTGLRVVSDNIANINTAGYVRKTIAQSNLVSNGMGVGVNIDAI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +              +S  G+   + +     + +  D     +    +  +  +     
Sbjct: 61  KRATDKYMAAASLNGASEAGRSGSIATAMDNAQKLFGDPSAKTNYFATLDDVYAAFSLAV 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +L    +   E+ +         +     D D  I  ++  +   L ++  +N 
Sbjct: 121 DDPSSTLLRSGAVTKVEDFLSESKRITASLSGQIKDTDNRIAGDVDRVNDLLKQIDSLNV 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  D     + +  L+ ++S  + I    R N  ++V +++G TL    P  +
Sbjct: 181 DITRAKMAGADGTGSENVQSGLIDELSTYMNIQVSDRANGGVMVRSAEGVTLAGNGPATV 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            + +                G V+     +    G+I+ LLQ+R+  +P   +QL E   
Sbjct: 241 TYNQSGPANGYLTVTTANSGGQVMPLAVTN----GEIQGLLQLRNKDLPNLSDQLGEFVS 296

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +     A +      +   D   D +        +T               D  
Sbjct: 297 RAAEELNRASNAASSVPAPNVMTGKDTGLDANTAFANFTGKTTIAVTNAAGAVVQRVDVD 356

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +     N      + +         N     +   G     +    A +       N 
Sbjct: 357 FGAGTMTVNGAPGPAFTNT--------NFLTQLNTALGGAATASFANGAMSLNTATATNG 408

Query: 416 SDSHDLHMKSQVVFN 430
               D          
Sbjct: 409 VAIVDDATTPSTKAG 423



 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 97/393 (24%), Gaps = 6/393 (1%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
            +              +           N +  ++ +  +D     +             
Sbjct: 316 NVMTGKDTGLDANTAFANFTGKTTIAVTNAAGAVVQRVDVDFGAGTMTVNGAPGPAFTNT 375

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
                    L  +    F +    +N      T       D         +  S+  G++
Sbjct: 376 NFLTQLNTALGGAATASFANGAMSLNT--ATATNGVAIVDDATTPSTKAGKGFSQFFGLN 433

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
            I+R++      T    T               + T  S    I +     + +    + 
Sbjct: 434 DIIRSDGYSPYETGMTATDPSGFTPGQTITLRLTDTDGSRIRDIAVAIPTGTGSMQETID 493

Query: 269 K-GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                 + + +  S     + +L                                   + 
Sbjct: 494 ALNSRNSGVGLYGSFALGSKGELTFTPSGAAPVTLSVVEDTTQRGTSGPSLSQLFGVGMS 553

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
            +  +G    +   P   ++PS L                  G          + +    
Sbjct: 554 ERSTRGGLFHVD--PAMEADPSKLPFAKLDLTAAAGTPALATGDGRGALALAKAGDVTTS 611

Query: 388 FDPVAGINTNV-TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
           F           ++L Y  +  G + +  + +      +  V   ++    +  GVNL E
Sbjct: 612 FANAGDAAAAKKSVLSYGADFSGSIARKAASATSRKEAADSVQTEVNAQRQSQEGVNLDE 671

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           EL  L   +Q++N S +LI  T  M   L   V
Sbjct: 672 ELVNLTTYQQAFNASARLIQATKDMFDVLTNIV 704


>gi|332140546|ref|YP_004426284.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550568|gb|AEA97286.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 461

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/483 (9%), Positives = 124/483 (25%), Gaps = 34/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +       NI N +   +                          V  
Sbjct: 2   SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAASLLAGGKTKVGDGVLT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L   ++++        F A    +++ D           + +   +++ 
Sbjct: 62  QEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFS----FTRAGQFKLDSDNFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + D L    ++          ++   V+   +    +   E+       +    ++ 
Sbjct: 118 VNSNGDNLLGFPVNADGTSASVALSTTEPVRIPDSSGSPQQTSEVDIRMNLPAGDAGLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                              D L    +  + +   + +++ M  Y     +        +
Sbjct: 178 QDFNPE-------------DPLTYNAATSVTVYDSLGDSHVMTYYFIKDGSPGVDNEWYV 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                ++    ++S      G             G     +     +     +       
Sbjct: 225 ATAIDDTLVDMTDSA-----GNDTDPATAVNSVGGNTGNAVTASKLIFSQGGDFSGMETP 279

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +   K         +         +   +      S T     Q+ S         
Sbjct: 280 DGNATLDFKMQTEALGAGILANGSDPNQQISIDFNLDVNSATPNEPTQFASAFEVTSLEQ 339

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     +   + +  ++  +   +   +    L +   +S  W E   
Sbjct: 340 DGLPVGRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFSNEQGLTQ--ESSTQWKESIL 397

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I+ S      VNL  EL  +I  ++++  +++ +   + + QT+
Sbjct: 398 SGEALAGEATTGTFGEINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNNSLNQTI 457

Query: 476 LEG 478
           L  
Sbjct: 458 LNI 460


>gi|203287743|ref|YP_002222758.1| flagellar hook protein [Borrelia recurrentis A1]
 gi|201084963|gb|ACH94537.1| flagellar hook protein [Borrelia recurrentis A1]
          Length = 441

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/490 (10%), Positives = 121/490 (24%), Gaps = 63/490 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          +    +                  +NS          
Sbjct: 61  GVNPKQIGLGMTVATVDTIHTQGSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               +  N +  +  +  +  +    Q FNTS+     I    DKE       +      
Sbjct: 121 DSNRHLVNPANGMRIQGWMAESVGGEQVFNTSSDIRDLIIPIRDKEGAKATEYI------ 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                                LD+R  ++Q+ +  + I+      N  +  +   T + E
Sbjct: 175 ----------------TFACNLDKRLPIVQQGANEVDIARGTWVVNKTIYDSFGNTNVVE 218

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      ++    + +  + ++G   S+       +G + +L     +        
Sbjct: 219 LR------VLKDATAPNTWNATVLVNGEENSNFTMGFDNEGALLSL-----NGQAGQPGD 267

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L E                     V      +G +   N     +        Q+    +
Sbjct: 268 LLEFPITF---------------GVIDANAGEGGEQTVNLRLGTVGSYADSITQFADAST 312

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     +   Y +   +      +A       L +       
Sbjct: 313 TKAIVQNGYGMGYMENYEIDQNGVITGVYSNGIRRTIGKIALASFVNPGGLAKAGD--TN 370

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E + S    +          I         V+L E+ + +I  ++ +  + K I  +D
Sbjct: 371 FTETSNSGQARIGETGFAGLGTIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSD 430

Query: 470 KMLQTLLEGV 479
           ++LQ L+   
Sbjct: 431 QLLQELVRLK 440


>gi|85712260|ref|ZP_01043311.1| Flagellar hook-associated protein [Idiomarina baltica OS145]
 gi|85693887|gb|EAQ31834.1| Flagellar hook-associated protein [Idiomarina baltica OS145]
          Length = 685

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/440 (12%), Positives = 140/440 (31%), Gaps = 13/440 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           M+   +  K Q       +  A   +NI N +N +YVR       +P   +  V  R   
Sbjct: 1   MASFDLLTKGQTAVLAHQRALAITGQNINNINNPDYVRERAEYVSNPFGGLRGVESRRMI 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L+     +  Q          + +  +    +S    ++   +S++  + + S
Sbjct: 61  DEYIVGQLNRSHMDVAFQNGKLDQAEPLDSLLGNT--ESSINSAVTSFFNSVQDANNDPS 118

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                + VI  AE ++   +  +R +       ++ +   +  +      +  +N+ +KF
Sbjct: 119 SLTNRQVVISEAEGLMTRMSDFSRYLNDQENIVNERVRDSVQQINTLSKNIAELNNELKF 178

Query: 180 KTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
            +++    DA+   +QRD  L+++S+++    +  +++ + V   +G  L     R    
Sbjct: 179 GSSNVKGFDANSLRNQRDQQLEELSKLVSFDVVKSDSDAVQVNLKNGVPLVLKDGRYNMI 238

Query: 238 EKMNSYTVTSESNPI--FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
              +          I                     +   +  RD+ +   Q ++ +MA 
Sbjct: 239 TANSQPDTGRVEIQIESTNSSDPTKFYLKPDQLGSALGGYMDYRDNQLLPAQRRIGQMAL 298

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY--RSNPSFLRD 353
            +  + + ++    + +N  G  + D        L    +             N + L  
Sbjct: 299 RIADTMNSQNQKGMDLDNQLGQKLFDLSSTPVRALDFEENTGNANINVGLLEGNSAKLTS 358

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG-WLE 412
              +  K   +   +    +      ++     +    AG  + + + EY          
Sbjct: 359 DNLLITKTGADTFTVQAADNQGRAIKNA---PEVTISTAGNPSAIAVEEYGIELTSANFS 415

Query: 413 KNRSDSHDLHMKSQVVFNHI 432
                   L    + +   I
Sbjct: 416 AASDGDKFLAKPVEDIAGDI 435



 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/413 (11%), Positives = 108/413 (26%), Gaps = 9/413 (2%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
              +     Q+R+ Q    + + M++ +       + + +    L   S      +  + 
Sbjct: 281 YRDNQLLPAQRRIGQMALRIADTMNSQNQKGMDLDNQLGQ---KLFDLSSTPVRALDFEE 337

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
              NA   V     ++ ++        K      +          + N      + +  +
Sbjct: 338 NTGNANINVGLLEGNSAKLTSDNLLITKTGADTFTVQAADNQGRAIKNAPEVTISTAG-N 396

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                 +   +    +     S   +     V   +    +  + P D+   K    +  
Sbjct: 397 PSAIAVEEYGIELTSANFSAASDGDKFLAKPVEDIAGDIAVAISRPEDLALAKPVRVSDD 456

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            E+       +   +   +                V     N        L         
Sbjct: 457 LENQGSANIELESINGTSNFFDAAGKTLADGAPTGVAVDAVNSDGTFDVTLSRKNGSDIT 516

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           + G S+       A+     +          +  +      P+        S    +N  
Sbjct: 517 LTGLSDLKNLAQQANDQAAANGNPAPFAGSPLDYDISINGQPA-----AGDSYSIEYNTD 571

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                 +         N           + N+T  E     +  +      +      +Q
Sbjct: 572 GFDDNRNGEAFTELQQNAQLRRSSADSDDANMTFAEGYSRVVSDIGSYVQQTRTRRDAAQ 631

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +       Y    GVNL+EE + LI+ E++YN + ++I    +   +LL  V
Sbjct: 632 AIEAQTQAMYEAKSGVNLEEEAANLIQFERAYNAAARIITVAQRTFDSLLNAV 684


>gi|323700469|ref|ZP_08112381.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132]
 gi|323460401|gb|EGB16266.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans
           ND132]
          Length = 516

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/523 (9%), Positives = 125/523 (23%), Gaps = 50/523 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPEN 49
           MS+        +     SQ  + +  N+ N+    Y                      + 
Sbjct: 1   MSISGSMYTGISGLQAQSQATSVVSNNLANSTTTGYKSVSIAFEDVFYSTVYAGGSLGQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              VT  S   +         +S          F  + +         N+          
Sbjct: 61  GNGVTTSSLTTDYSQGAYETTNSVTDVAINGDGFYIVVD-----PDTGNTYYTRDGGFTL 115

Query: 110 SLESYSKNLSEDILGKTVIDNAE----------EVVQNFNTSAREVQKIRADADKEIELE 159
             + Y  +   + +     ++            +  Q+   +  EV         E +  
Sbjct: 116 DTDGYLVDSHGNHVQGWETEDGSITGGLVDIQIDNSQSPPQATGEVAIQVNLDSTETDNT 175

Query: 160 ISNLRRFL----SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
            S+   +           + A+     +        D+             + T   +  
Sbjct: 176 TSSTNPYAALFEIYDGTADPALDDSRYAYQTTITVYDENGASHDLTVYYDPVETDDGSIV 235

Query: 216 DMVVYTSD---------GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
              +   D         GT + +T    +      +++ + +   +    +  +    + 
Sbjct: 236 WEYMVCCDASEDMRDFEGTDMADTSAAGLLVTGTLTFSTSGDLQSMTAFTLSDTPTDTTD 295

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
               +   L    +  +P+F+            S +     +  +               
Sbjct: 296 PLAEENWVLADFDNDGLPVFECNFTGADENQTVSMNFGLSNSDFATGTGWDTTGGIDSLD 355

Query: 327 DNKLCQGISETICVNP---------QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
           D        E    N             S+ +                  +     +   
Sbjct: 356 DMTAATTPDELPSFNTGVLSTAATTSTTSSSATYTLSQDGYAPGELTDITINENGVIEGS 415

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
           Y +  ++      +A       L     N         S    +       F  I+ +  
Sbjct: 416 YTNGQSQELYTFALADFTNTQGLYSEGGNLYS--ATTESGQALVGTPGSAGFGTIASNSL 473

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               V+   +L+ LI ++ +Y  ++K+I   D +L T +   +
Sbjct: 474 EQSNVDTATQLTNLIIIQAAYQANSKIITTADTLLSTAIGLKR 516


>gi|238758104|ref|ZP_04619284.1| hypothetical protein yaldo0001_12400 [Yersinia aldovae ATCC 35236]
 gi|238703642|gb|EEP96179.1| hypothetical protein yaldo0001_12400 [Yersinia aldovae ATCC 35236]
          Length = 555

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/556 (10%), Positives = 148/556 (26%), Gaps = 81/556 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  + A    +++  NI N     Y R++ +   +             V
Sbjct: 1   MS-NSLMNTAMSGLSAAQYALSTVSNNITNFQVAGYNRQNAIFAQNGGTLSPAGFLGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           T+     E        L   SS      L   ++ + ++ +   + +N+ +  +     +
Sbjct: 60  TITGVNREYNAFITNQLR--SSQTQSSGLTTYYQQISQIDNLLSNSSNNLSTTMQGFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSA---------------------------- 142
           L++   N  +D   KTV+   E +V  F  +                             
Sbjct: 118 LQNLVSNAGDDAARKTVLGKGEGLVNQFQNADKYLRDMDVGVNQKITESATQINNYAEQI 177

Query: 143 ----------------------REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                                  +  ++  + ++ + + ++        ++        +
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIVGVTVTQQDGDAYNVSFAGGLSLVQ 237

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR------- 233
             + +         D     +    G    +  +   +   S G TL             
Sbjct: 238 GPNAYKVEAIPSSGDATRLTLGYKYGSGDTLEVDERRLTNGSLGGTLKFRSEALDSARNQ 297

Query: 234 --------DINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVP 284
                     +F   +     +  +               +A  +G     +   D+   
Sbjct: 298 LGQLALVMADSFNTQHKVGFDANGDAGTDFFSFSDPTTLKNARNQGDAGLSVSYTDTSKV 357

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +   E            D     +  V            D       + T+    + 
Sbjct: 358 KASDYSVEFDGTNWQVTRLSDNTKVPANPVLDGSGKTTGLSFDGVAVSIDNGTVGPQAKD 417

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA--GINTNVTLLE 402
           +     + +  +  +  + +   +A          D+ N   + D      ++   TL  
Sbjct: 418 KFTVKTVSNVAANLQVAISDSSKIAAAGTKDGGASDNTNAQALLDLQTKKLVDGKATLSG 477

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                +  +    + +         +   ++    +  GVNL EE   L + +Q Y  + 
Sbjct: 478 AYAGLVSNVGNQTATAKTNSTAQANIVKQLTAEQQSISGVNLDEEYGDLQRFQQYYLANA 537

Query: 463 KLIMFTDKMLQTLLEG 478
           ++I     +   LL  
Sbjct: 538 QVIQTASTLFNALLGL 553


>gi|332305621|ref|YP_004433472.1| flagellar hook-associated protein FlgK [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172950|gb|AEE22204.1| flagellar hook-associated protein FlgK [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 709

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 140/414 (33%), Gaps = 13/414 (3%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKNMFDKV 66
           + A++    ++Q  ++   NI N +   YVR  T         V   T            
Sbjct: 9   SIARSGVEASNQLLSTTGNNIANVNTDGYVRERTSFVAQLTGGVGQYTTERVMNTFAQNQ 68

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           L   ++ + +     +  A+ + + A +   NS +  +S+   SL++ + + +     + 
Sbjct: 69  LRRDTTNLAEHEAYWTKTAVLDNVFASEA--NSISASMSRFFASLQTANDDPTNMSARQL 126

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           V+ +AE ++    T +  +     + + E    ++ +   +  +   N++I+   A+   
Sbjct: 127 VLGDAESMLGQMGTLSTFLTNKEREINFEFTDSLNKVNSLVESIASFNESIRIAQANNRH 186

Query: 187 --AHDFLDQRDVLLQKISEIIGISTIV--RNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                 +++RD  + ++S ++ I T     N+  +++  + G +L         FE  NS
Sbjct: 187 DVPGALMNERDAAVLELSSLVSIETRESSNNDGSIMINLTSGESLVMQDGTFSVFEVNNS 246

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             ++ +S  +  +G   S N       G I  L + RD V+   + +L ++A  +  + +
Sbjct: 247 ADLSYKSLQLTSNGKPTSLNLSETELGGTIGGLFRYRDEVLEPSRRELGQIALAVTEAVN 306

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            ++    + +   G  I                 T  VN +     +             
Sbjct: 307 TQNRAGMDFDQQLGGEIFTRPITTGLNYPTNADNTSIVNGRISQGGASDITSADYHVTID 366

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                +    D+     +                 V + +              
Sbjct: 367 GVTAGVPPTIDVTVALLNIDGSPVTDV------DGVPISQSYPGLTAQSGVFSE 414



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/451 (11%), Positives = 120/451 (26%), Gaps = 15/451 (3%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               + +    T+         + +                 + +    M          
Sbjct: 264 SLNLSETELGGTIGGLFRYRDEVLEPSRRELGQIALAVTEAVNTQNRAGMDFDQQLGGEI 323

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T  I+   +    Y  N     +    I                +  + A     I++ 
Sbjct: 324 FTRPITTGLN----YPTNADNTSIVNGRISQGGASDITSADYHVTIDGVTAGVPPTIDVT 379

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST---------- 209
           ++ L    S +T V+     ++     A   +    +   ++    G             
Sbjct: 380 VALLNIDGSPVTDVDGVPISQSYPGLTAQSGVFSEVLGGMELEFSKGTGYAVGDQFLLQP 439

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                + + V+T+    L    P  +     N       S  +    V  S     +   
Sbjct: 440 TKDVADKIEVFTTRPEDLALASPIRVEAGDDNLGGAELVSTTVTNTFVDTSPFDARSSGF 499

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                +     +           +       +   D        V G+   D +      
Sbjct: 500 DGAGGIHAPGAAPGGGVGAP-ASVRFNSATEYEVLDSAGTIITTVSGISSLDNLLAQAAD 558

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +    ++     + +   +  +     +    N            +  N N +  
Sbjct: 559 TPGWPAAFDALDNYPGYDFTLQGEPKAGDTFAIGYNANGLNDNRNGLIMANLQNVNGMQL 618

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
             AG    V+  E   N +G + +  +++       + +     + + +  GV+L EE +
Sbjct: 619 NNAGSGDPVSFHEAYANIVGDIGQKSANADIAVKAGEALKLQSQDWFDSVSGVSLDEEAA 678

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            L++ +QSY  S +L+    +M  T+L  V+
Sbjct: 679 NLVRFQQSYAASARLLNTAQEMFDTILSMVR 709


>gi|229826311|ref|ZP_04452380.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC
           49176]
 gi|229789181|gb|EEP25295.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC
           49176]
          Length = 495

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/502 (8%), Positives = 109/502 (21%), Gaps = 31/502 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46
           ++               +   I  NI N +   +    T+ +                 +
Sbjct: 1   MMRSLFSGVAGLKVHQTKMDVIGNNIANVNTVGFKSSSTVFSDVFYQTTQTASGPNKESN 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V                                     +      +   +       
Sbjct: 61  VGGVNPKQIGLGANVSSISKNITDPGGSQTTNNALDCMINGDSFFVTKNGGRTYFTKNGA 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +   +    N     +    +D  +         +            E           
Sbjct: 121 FKVDTDGTLVNSEGAKVQGWQVDPDDPNKIKPGPVSN-----LNIMSPENMYTNPEATTA 175

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
                 ++                ++  D L  + +    +     ++N   +   D   
Sbjct: 176 GYLSGNIDRTDSQIAPGSAGRTFQMNFYDNLGYEYTAKFVMKQSKNSDNAYNIELKDILK 235

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFID-------GVVVSSNQGSAVPKGKIKALLQIR 279
             +++  +   +   S   T+      +         V    +     P         + 
Sbjct: 236 DGKSIMYNAEKKDDGSIEYTTTGWGATLSKDKQELSSVGTVDSVDDGKPNFGDPGKFNMV 295

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
                     L E            D +        G    +  K+++    Q       
Sbjct: 296 FDGTTGKFKSLVEDPSDEYDPSGMDDTVIKKMYLNIGGKTPNPFKNIELDFSQMTMFASQ 355

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            + +  S    +   G    K       +     +   Y +   K      VA       
Sbjct: 356 TSSKIESTMGDVDGNGKGKMKGTMKGATIDNAGKIYGSYDNGDLKLLGQIAVASFKNPSG 415

Query: 400 LLEYARNSIGWLEKNRSDSHD-LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           L     +   ++E   S   D +          IS        V+L  + + +I  ++ +
Sbjct: 416 LEAVGNS--NFVETMNSGKFDGVGKDITTDGGKISTGMLEMSNVDLAAQFTDMITTQRGF 473

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
             +++ I  TD +L+ L+   +
Sbjct: 474 QANSRTITTTDSILEELINLKR 495


>gi|254508414|ref|ZP_05120534.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 16]
 gi|219548624|gb|EED25629.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 16]
          Length = 624

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 128/348 (36%), Gaps = 17/348 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + +        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLSLGSQSVLTAQRQLNTTGHNISNANTEGYSRQSVVQGTNIPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++    +   ++   +   M +           I++  D+++S
Sbjct: 63  KVRRSWDQFAVNELNMSTTNHAHKLDDEANLEMLSNMLSSVSSKK-IPENINEWFDAVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ +  + QN N     V++     +K+++L I  + +   E+  +
Sbjct: 122 LADSPNDVGARKVVLEKSTLITQNLNDFHETVRRQSDVTNKKLDLGIERINQLALEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +DF+DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDFMDQHEKLINELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ Y    E     I+G  + +   S    GK+ A+L +RD  +P   ++L +
Sbjct: 239 ASKL-TMIDGYPDVHERRLAMIEGKGIKA-ITSKDIDGKLGAMLTMRDEKIPQLMDELGK 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           MA       ++      +     G  I   +        + ++ +   
Sbjct: 297 MAAAFSYDINKLQSQGLDLRGDIGGLIFTDVNSDIIAESRVVTSSKSQ 344



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/434 (11%), Positives = 122/434 (28%), Gaps = 16/434 (3%)

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + +  D+     +      ++  +    K     + H  N  T         L       
Sbjct: 192 HNDFMDQHEKLINELSEYTKV--TVTPRKNAEGFNVHIGNGHTLVSGTEASKLTMIDGYP 249

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                   +I+              ++  +    D++I   +  L +  +  +   + ++
Sbjct: 250 DVHERRLAMIEGKGIKAITSKDIDGKLGAMLTMRDEKIPQLMDELGKMAAAFSYDINKLQ 309

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            +          L   DV    I+E   +++     +  V        +        +  
Sbjct: 310 SQGLDLRGDIGGLIFTDVNSDIIAESRVVTSSKSQADLAVYIEDPSQLVAGEYSLQYSGG 369

Query: 239 KMNSYTVTSES--NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  + E    P+  D + +   +            + IR +     Q +++     
Sbjct: 370 DYYITRPSGEQFVVPVVDDAITLDGIRIDIRQDLAAGERVLIRPTRNSAAQIKMETNDPS 429

Query: 297 LIGSFSEKDPIAG---------NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            I + S +              +       F      D            I + PQ    
Sbjct: 430 HIAAQSYEASTTFAQGSAKFRIDEVGDLREFEVIVSPDGKQFAVTDTKGKILMQPQDYPP 489

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
              +    +  +     + N     +L+       +      I       +   T+L+  
Sbjct: 490 SGPVTVQNTTFELTGGALPNDKFTANLVPSEGDNGNLLKMQNIQTEKKLNDGESTILDIY 549

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N    +    S +  L   S++      E  ++  GVNL EE + ++K +Q+Y  S+++
Sbjct: 550 HNLNTDVGLQMSTASRLTDVSRLEKEAAQERVASISGVNLDEEAANMMKFQQAYMASSRI 609

Query: 465 IMFTDKMLQTLLEG 478
           +   +    T+L  
Sbjct: 610 MQAANDTFNTILAL 623


>gi|258621055|ref|ZP_05716089.1| flagellar hook-associated protein 1 [Vibrio mimicus VM573]
 gi|262166276|ref|ZP_06034013.1| flagellar hook-associated protein FlgK [Vibrio mimicus VM223]
 gi|262170831|ref|ZP_06038509.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451]
 gi|258586443|gb|EEW11158.1| flagellar hook-associated protein 1 [Vibrio mimicus VM573]
 gi|261891907|gb|EEY37893.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451]
 gi|262025992|gb|EEY44660.1| flagellar hook-associated protein FlgK [Vibrio mimicus VM223]
          Length = 624

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 122/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  D++++
Sbjct: 63  NVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K ++L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLDLGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R N     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ +  T +     I+G  +       +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMIEGKAIKPISARDI-GGKMEAILDMRDKHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LAISFSHEVNTLQSQGLDLRGNVGGPLFTDVN 328



 Score = 94.3 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/414 (10%), Positives = 110/414 (26%), Gaps = 14/414 (3%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
              +    K     + H  N  T         L+              +I+       + 
Sbjct: 210 TKVTVTQRKNGEGFNIHIGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMIEGKAIKPISA 269

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
                +++ I    DK I   +  + R     +   + ++ +              DV L
Sbjct: 270 RDIGGKMEAILDMRDKHIPYLMDEVGRLAISFSHEVNTLQSQGLDLRGNVGGPLFTDVNL 329

Query: 199 QKISEIIGIS--------------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             I+    ++                     +  +  +    +          + +    
Sbjct: 330 DVIARSRVVTSSNSKADMAVFIDDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVQPVVKGN 389

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           V  +   I +        +    P     A +++          Q  E +       ++ 
Sbjct: 390 VYIDGLRIEVRNAPQVGERILVRPTRSGAAAIRLATEDATKIAAQSFEASTTFAQGKAQF 449

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             +         + ++           +G               + L     +++  L N
Sbjct: 450 KILQAGDVREFEVHVSPTGDQFAVTDTKGNILMQPQPYPPTGPVTVLGTTFELTEGALPN 509

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            K  A          +      I       +   T+++   N    +    +    L   
Sbjct: 510 DKFTANLVPSEGDNGNLRKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDV 569

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +++         ++  GVNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 570 ARLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|94495405|ref|ZP_01301985.1| flagellar hook-associated protein 1 [Sphingomonas sp. SKA58]
 gi|94424793|gb|EAT09814.1| flagellar hook-associated protein 1 [Sphingomonas sp. SKA58]
          Length = 445

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 144/492 (29%), Gaps = 62/492 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +  +F    +         A+I  NI NA    Y RR   T  S                
Sbjct: 1   MSDLFIIGSSGTKAYRTAMAAISENIANAGTDGYARRTVTTAESGASTSTMSLYIAKANF 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               V+     +    D  +      +G       +  L +  +A +  +      ++ +
Sbjct: 61  GGTQVMGVDRASDPYLDATVRTTGMNLGSATARLRW--LTDAETAMNDSSTGVGQLMTSM 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             ++E  + +  +  L  T +D+   V Q+FN +A ++  +      E    +  + R L
Sbjct: 119 FQNMEKLAASPGDTSLRVTTLDSISRVAQSFNQTAADLTNVSDGIATEATASVQTINRSL 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           S L  +N+++             LD RD  LQ +SE + ++     ++   +  +  T +
Sbjct: 179 SALANINNSLLRAQPGTSAYAQLLDSRDAALQDLSENLNVTISFGAHDSAEISFAGQTLV 238

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                  ++       ++    +         +         G +  L       V   +
Sbjct: 239 SGNSAASLSVATNGDGSLALSLSDGTALSAPAN---------GTLGGLFSAA-QTVTERR 288

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             LD +A   +   +             G+ +                            
Sbjct: 289 ASLDTLAEQFVTDVNAWHAQGLTDAGDAGVPLLSY------------------------- 323

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                               +     L     D      +    + +  N ++ +   + 
Sbjct: 324 ----------GGGAANVAALVTDPALLALKSADGTLNGNLLTVTSTLRGNGSVEQAWTSL 373

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +         +      +    +    +     GV+L  E + L++++Q+Y+   K++  
Sbjct: 374 VATHANLLGATQAEFDTATNRSDQAVAAREAVSGVDLDMEAADLLRLQQAYSGCAKILQI 433

Query: 468 TDKMLQTLLEGV 479
             + + ++L  +
Sbjct: 434 AKETIDSILNII 445


>gi|94987189|ref|YP_595122.1| flagellar hook-associated protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731438|emb|CAJ54801.1| Flagellar hook-associated protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 705

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/421 (10%), Positives = 120/421 (28%), Gaps = 19/421 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS+  +F   ++              NI N + + Y R+                  + V
Sbjct: 1   MSINTLFGIGKSAIAGNQTALNVTGNNIANVNTQGYSRQSVRFEDRYGLNQTPGMLGQGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                        +       S   +     +     E +  ++      +  + +    
Sbjct: 61  HTAEIYRNFNRFVEDAYLNRFSQNTRWDEQSAIMNSIESIF-NESNRTGISSLLGEFFKG 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            ++ S    +    + V+  A+ + Q  N +   +QK + + D  I+  ++ +   +  +
Sbjct: 120 WQNLSLRPEDAATREAVLSTAKNLTQLINDAKSSLQKTQQEMDLYIQQSVNKVNELVDAI 179

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I         + +  LDQRD L+++++ ++ I    +   +  +    G  L  
Sbjct: 180 KNINKQISATYIPGQQNPNQLLDQRDQLVRELANLVDIEVKDKGGGNFDIQLKSGQPL-- 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +  +   + +V  +    ++      +   ++      +   +I +         
Sbjct: 238 -----LEGQIGYTLSVGGQRVENYLKQDSKYTGTITSSGSDSHEYSFEIINPPSGGAPGS 292

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +             +D    N            +K+L+    Q  S+ +  +       +
Sbjct: 293 MRVSLDGGKTWLRNEDGSELNVPIPTTPGETIKVKNLEISFDQDPSQLVSGDRFDVIPKT 352

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            L              + L    +            +           +  L+   NSI 
Sbjct: 353 GLYWNSPTRPPINITPQTLNDGTENTGRLTGGKLTAYFSTRDYNAGRYIDKLDALANSIV 412

Query: 410 W 410
           W
Sbjct: 413 W 413



 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 6/299 (2%)

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A+  + + + +  + +    ++  + ++         GT+       +       S+ + 
Sbjct: 408 ANSIVWEVNRIHSQGAGEQKMTYSLGSSQVNRTDVPLGTSQSGLAYGNRLTTGNLSFQIY 467

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD-----SVVPIFQNQLDEMARVLIGSF 301
            E+      G   +    S         +            +    N  +     +  S 
Sbjct: 468 DENGKPLPVGTPPNGIPESLDLDPGTPGVQNFDPSIHSLEDLVNAINHPNNYGEFMKASI 527

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                   +          D    L         +                     + K 
Sbjct: 528 VNGSLQLTSRPGTSFAAKTDTTGLLAALGINTFFQGSDATDMAIKPDVIQNTNFINAGKV 587

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             N +   G   +     D      +        T+ TL  Y    +G +  +   +   
Sbjct: 588 NANGEVSTGDNSIAKELAD-LATKEVTISTGWETTHQTLGAYYGALVGLVGSDTRTAKFN 646

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              ++ + N + +   +  GVNL EE++ LIK + SY  + KLI   D+MLQTLL   +
Sbjct: 647 ADYNKTLSNELEQQALSITGVNLDEEMTQLIKFQHSYTAAAKLITTADQMLQTLLSLKQ 705


>gi|258625283|ref|ZP_05720191.1| flagellar hook-associated protein 1 [Vibrio mimicus VM603]
 gi|258582456|gb|EEW07297.1| flagellar hook-associated protein 1 [Vibrio mimicus VM603]
          Length = 624

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 126/347 (36%), Gaps = 17/347 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  D++++
Sbjct: 63  NVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K ++L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLDLGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R N     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ +  T +     I+G  +       +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMIEGKAIKPISARDI-GGKMEAILDMRDKHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +A       +       +     G  +   +        + ++ +  
Sbjct: 297 LAISFSHEVNTLQSQGLDLRGNVGGPLFTDVNIDVIARSRVVTSSNS 343



 Score = 94.3 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/414 (10%), Positives = 110/414 (26%), Gaps = 14/414 (3%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
              +    K     + H  N  T         L+              +I+       + 
Sbjct: 210 TKVTVTQRKNGEGFNIHIGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMIEGKAIKPISA 269

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
                +++ I    DK I   +  + R     +   + ++ +              DV +
Sbjct: 270 RDIGGKMEAILDMRDKHIPYLMDEVGRLAISFSHEVNTLQSQGLDLRGNVGGPLFTDVNI 329

Query: 199 QKISEIIGIS--------------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             I+    ++                     +  +  +    +          + +    
Sbjct: 330 DVIARSRVVTSSNSKADMAVFIDDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVQPVVKGN 389

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           V  +   I +        +    P     A +++          Q  E +       ++ 
Sbjct: 390 VYIDGLRIEVRNAPQVGERILVRPTRSGAAAIRLATEDATKIAAQSFEASTTFAQGKAQF 449

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             +         + ++           +G               + L     +++  L N
Sbjct: 450 KILQAGDVREFEVHVSPTGDQFAVTDTKGNILMQPQPYPPTGPVTVLGTTFELTEGALPN 509

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            K  A          +      I       +   T+++   N    +    +    L   
Sbjct: 510 DKFTANLVPSEGDNGNLRKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDV 569

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +++         ++  GVNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 570 ARLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|260597451|ref|YP_003210022.1| flagellar hook-associated protein FlgK [Cronobacter turicensis
           z3032]
 gi|260216628|emb|CBA29928.1| Flagellar hook-associated protein 1 [Cronobacter turicensis z3032]
          Length = 540

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 128/398 (32%), Gaps = 14/398 (3%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMF 63
            + A    +++  NI N +   Y R+ T+   S             V V   + E     
Sbjct: 1   MSAAQTALSTVSNNISNYNVAGYTRQTTILGQSNSTMTQGGWVGNGVFVSGIQREYDAFI 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              L+A  +            +  + M       N+ +  +     SL++ + N  +   
Sbjct: 61  TNQLNAAQNQSSGLTTRYEQMSKIDDM--VSGTTNNISTTMQDFFKSLQTLASNAEDPAA 118

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT-- 181
            +T++  A+ +V  F    + ++      +  +   +  +  F +++  +N+ I   T  
Sbjct: 119 RQTLLGKADGLVNQFKVVDQYLRDQDKQVNTAVTASVQQINNFATQIASLNEQITRLTGM 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +    +D LDQRD L+ ++++I+G+   V++ N   V  ++G  L +           +
Sbjct: 179 GAGASPNDLLDQRDQLVSELNKIVGVDVSVQDGNTFNVTMANGYNLVQGSRASQIAAVPS 238

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S      +                 V  G +  L   R   +   +N L ++A     +F
Sbjct: 239 SADPARTTIAFVDKTAGNIEIPEKLVTSGSLGGLFAFRSEDLDQARNNLGQIALAFGDAF 298

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +++     ++    G               +             S+     +        
Sbjct: 299 NKQHEAGFDANGDAGKAFFTLGSPAAMSNARNTGSASLTATITDSSAVKASNYQMAYDGT 358

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            W V  L+    +        + N       G+   +T
Sbjct: 359 NWKVTRLSDNVTVNATPTTDGSGNVTALEFDGLKIGIT 396


>gi|289208114|ref|YP_003460180.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix]
 gi|288943745|gb|ADC71444.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix]
          Length = 408

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/475 (8%), Positives = 100/475 (21%), Gaps = 73/475 (15%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---NVTVVTQRSENKNMF 63
           FN   +  N+A     +   N+ NA    + R                  T       + 
Sbjct: 3   FNIGLSGLNSAQADLQTTGNNVSNAGTTGFKRSRAEFGDVFAQSFGGVSQTATGGGSRLM 62

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
                                   E     +   N       + + + +    N      
Sbjct: 63  AVTQQFSQGRTEFTENGLDLAIDGEGFFVMNDGGNRVYTRAGEFQVNRDGNLVNNQG--- 119

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                                                    + L     +N        +
Sbjct: 120 -----------------------------------------QQLQGYPPINPGSTDTDFN 138

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                D   Q      + +  I     ++++  ++          ++     +    +S 
Sbjct: 139 TGQLGDLRLQTGASAPQATSDIEALVNLQSDAPILDPGEFEFDDPDSYNYSTSLTVYDSL 198

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
             + ++   F+           +V    I                              E
Sbjct: 199 GTSRDARIYFVKSDEREWTAFMSVDGEPIN------------------------EEEGFE 234

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
               A    +    F        +       +       Q+  + +    G         
Sbjct: 235 LSFDASGQLDGNTEFPFSTDDFTNGAEGLDGTIDFAGTTQFGGDFAVNDLGQDGFASGRL 294

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
              ++     +   + +  +       +A       L +   N   W E   +       
Sbjct: 295 TGVDIDSSGVVFARFTNGQSSVLGQVALANFTNPQGLEQLGNN--NWAETFAAGDPVFAS 352

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   I         V++ +EL  LI  ++++  + + I   D++ QT++  
Sbjct: 353 PGTGNLGEIQAGALEASNVDIAQELVNLITAQRNFQANAQTISTADQVTQTIINI 407


>gi|90579909|ref|ZP_01235717.1| flagellar hook protein [Vibrio angustum S14]
 gi|90438794|gb|EAS63977.1| flagellar hook protein [Vibrio angustum S14]
          Length = 467

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/488 (10%), Positives = 128/488 (26%), Gaps = 38/488 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
             N A +    A +   +   NI NA+   +                    T +   V  
Sbjct: 2   SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSNSIFSNAKTTTGGGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T         +      ++ +  +     F A+ +    ++  NN+          + E
Sbjct: 62  STVAQ---QFHEGSSIYTNNPLDLRVSGSGFFAVADN--KNEPANNNL-TRNGAFHLNNE 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    ++     V ++   + ++  +     K   +++S L     E   
Sbjct: 116 NELVNSEGKFLLGYPVNKDSNTVASYEAKSMKIDDVFGQPTKSGTIKVS-LNLPNKETAP 174

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVL--LQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +++  FK     +        D L    K++                       T+   
Sbjct: 175 KSNSFDFKDPDSFNKSTSSTIYDSLGKPYKMTTYYVAKYDPNAVPTNANTWEVHQTVTNN 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +   +   +    +    +  +    +        +          D   P     +
Sbjct: 235 SGEERLLKPDPTKIPPAYQ--VIDNTDPTAPVVTGYRMRFDQNGQPYPGDPGDPTATPAI 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                  +    E    AG          +  +   D        E              
Sbjct: 293 PPTPASPLNIQMETFASAGIDVGGADPTQSLTMNYDDPTQYASAFEVRKFQDV------- 345

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                  +     +  ++    +++  Y +  +       +A ++    L +       W
Sbjct: 346 -----DGATTGYLSKVDIDPEGNILASYSNGKDIVVGRVALARVSNEQGLAQLGGTL--W 398

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S        SQ  F  +         +++ +EL  LI  ++++  S++ +   ++
Sbjct: 399 NTTQESGQAIWGDASQGSFGSVKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQ 458

Query: 471 MLQTLLEG 478
           + Q +L+ 
Sbjct: 459 LQQNILQI 466


>gi|109899402|ref|YP_662657.1| flagellar hook protein FlgE [Pseudoalteromonas atlantica T6c]
 gi|109701683|gb|ABG41603.1| flagellar basal body FlaE [Pseudoalteromonas atlantica T6c]
          Length = 458

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/483 (10%), Positives = 128/483 (26%), Gaps = 37/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI N +   +            +             V  
Sbjct: 2   SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYASSLLAGGKTKVGDGVIT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      L   ++++        F A    + + +             +   E++ 
Sbjct: 62  QEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDSREFS----FTRAGMFKLDAENFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + D L    ++          ++ + V+   +    +   E+S      +    V+ 
Sbjct: 118 VNSNGDNLLGFPVNPDGTSSSVALSTTQAVRIPDSSGSPQPTSEVSLKMNLPAGDDAVD- 176

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                        D  +  D L    +  + +   + +++ M  Y               
Sbjct: 177 ------------LDLFNPDDPLTYNAATSVTVFDSLGDSHVMTYYFMKDQAATNEWVVTT 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             + +   T         I G  V      +   G         D       +       
Sbjct: 225 YMDDIALNTEGDTPGVPPITGPNVVGETTGSPVAGYRMTFSAGGDFTSIANADGTSSATG 284

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            +         +A  S+    +         +               Q+ S         
Sbjct: 285 DITSVALGGTILANGSDPSQTITTNFAFDPGNATP--------DEPTQFASAFEVTSLEQ 336

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     +   Y +  ++  I   +     +  L +  +++  W E   
Sbjct: 337 DGLAVGRLTGIDIGADGLVRATYSNGTSEPIIRVALVRFANDQGLTQ--QSNTQWQESIL 394

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I+ S      VNL  EL  LI  ++++  +++ +   +++ QT+
Sbjct: 395 SGEALAGEATTGTFGDINSSALEQANVNLTTELIDLIIAQRNFQANSRALEVNNQLNQTI 454

Query: 476 LEG 478
           L  
Sbjct: 455 LNI 457


>gi|118477189|ref|YP_894340.1| flagellar hook protein FlgE [Bacillus thuringiensis str. Al Hakam]
 gi|225863612|ref|YP_002748990.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102]
 gi|229183945|ref|ZP_04311161.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1]
 gi|118416414|gb|ABK84833.1| flagellar hook protein [Bacillus thuringiensis str. Al Hakam]
 gi|225790448|gb|ACO30665.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102]
 gi|228599597|gb|EEK57201.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1]
          Length = 437

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/478 (11%), Positives = 122/478 (25%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  V    +        S       +      ++     +        +          
Sbjct: 107 NGGNVEYTRKGSFGVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      + +   K   
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKVVEKPKAGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT +        +       +G    K  I   L          Q           GS  
Sbjct: 227 YTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVTGEITKGGSIK 286

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                    +                         +     Y +  +      +     +
Sbjct: 287 IPFGSGLTLD-------------------------LSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|163802597|ref|ZP_02196489.1| flagellar hook-associated protein K [Vibrio sp. AND4]
 gi|159173680|gb|EDP58499.1| flagellar hook-associated protein K [Vibrio sp. AND4]
          Length = 637

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 125/400 (31%), Gaps = 18/400 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQLGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++     +L                 +      +++  D++++
Sbjct: 63  NVRRSWDEFAVKELNLSTTNYA-SKLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+      N     V++     +K +++ I  + +   E+  V
Sbjct: 122 MADTPNDMGARKVVLEKAKLFSDTLNEFHETVRQQSDVTNKSLDMGIERMNQLAVEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L++++SE   ++   R N++   V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    S  V      +   G + +         GKI ALL++RD  +P   ++L  
Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A       +       +     G  +   +        + +                  
Sbjct: 297 VATAFSSEVNHLQSQGLDHYGHIGEPLFTDVNSESLAKSRVVVGPQSTADMAVYVNDISA 356

Query: 353 DGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
             G      +  +  N+              +     D +
Sbjct: 357 LKGGEYSLRYDGDSYNVTKPNGETVKLNTGADNAIYIDGM 396



 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/353 (10%), Positives = 95/353 (26%), Gaps = 16/353 (4%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
              + ++  +  +      S +    S+       I     +  ++      R V+  + 
Sbjct: 284 DEHIPQVMDELGRVATAFSSEVNHLQSQGLDHYGHIGEPLFTDVNSESLAKSRVVVGPQS 343

Query: 202 SEIIGISTIV----RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
           +  + +        +     + Y  D   + +     +         +  +   + +   
Sbjct: 344 TADMAVYVNDISALKGGEYSLRYDGDSYNVTKPNGETVKLNTGADNAIYIDGMRVEVRNE 403

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS------ 311
                     P     A +++          Q  E +       +E + +          
Sbjct: 404 PKVGEHVLLRPTRSSAAQIKVETQDPKAIAAQSYEASTTFAQGNAEFEILGAGDLREFEV 463

Query: 312 ------ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                 +          +              + +   + S          +S   L N 
Sbjct: 464 VVSPMGDQFAVTDTEGNVLMAPQPYPPNGPVAVSLPSNHPSYRDGSATVFELSPGALAND 523

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           K  A          +      I           T++    N    +    S +  L   +
Sbjct: 524 KFTANLVPSEGDNGNLRKMQEIQTEKKMNGNESTIMSLYFNLNTNVGLKTSTASRLADVA 583

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           Q+      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T+L+ 
Sbjct: 584 QLESEAAQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636


>gi|134095097|ref|YP_001100172.1| flagellar hook protein FlgE [Herminiimonas arsenicoxydans]
 gi|133739000|emb|CAL62048.1| Flagellar hook protein FlgE [Herminiimonas arsenicoxydans]
          Length = 418

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/484 (11%), Positives = 109/484 (22%), Gaps = 79/484 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVT----VVTQ 55
            F +  +  N AS+   +I  N+ N+    + +             S             
Sbjct: 2   SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGTQI 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      + A ++ +        F  +                   +   S E + 
Sbjct: 62  ARVAQLFSQGNITASNNPLDMAINGDGFFRM-------SSGGTISYARNGQFELSKEGFI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           ++ S   L   + D    V                                      +N 
Sbjct: 115 QSASGARLTGYMADANGVVAIG-----------------------------APAELKINK 145

Query: 176 AIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           A     A+        LD R  +L   +      T   ++  + VY S G +        
Sbjct: 146 ADLAPEATTKYELKLTLDSRKNVLNSANFNPDDPTTFNDSTSVPVYDSLGNSHILRTFYV 205

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T++  PI  D   V                  +    +P          
Sbjct: 206 KTAGGEWDVFATNDGVPIGYDPAAVPPANAPVALGTMQFGPGGVLIPSIPPT-------- 257

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                                   +              I        Q+  +    +  
Sbjct: 258 ----------------------PLVVPMDVSTGATTPFNIVIDHTGTQQFAQSFGVNKQL 295

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       N+A    ++  Y +          ++       L     N   W+E  
Sbjct: 296 PDGFPPGTLTAFNVASDGSIVGRYSNGKVNVLGQVILSSFANPNGLQNIGDNQ--WVETA 353

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S               +  +      V+L  EL  +I  ++ Y  + + I   D++LQT
Sbjct: 354 ESGVALTSAPGSSGLGSVQSARIEESNVDLTAELVNMITAQRYYQANAQTIKTQDQILQT 413

Query: 475 LLEG 478
           L+  
Sbjct: 414 LVNL 417


>gi|228984838|ref|ZP_04145009.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229155324|ref|ZP_04283435.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342]
 gi|228628249|gb|EEK84965.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342]
 gi|228774890|gb|EEM23285.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 437

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 122/478 (25%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  V    +        S       +      ++     +        +          
Sbjct: 107 NGGNVEYTRKGSFGVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      + +   K   
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKVVEKPKAGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT +        +       +G    K  I   L          Q           GS  
Sbjct: 227 YTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVTGEITKGGSIK 286

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                    +                         +     Y +  +      +     +
Sbjct: 287 IPFGSGLTLD-------------------------LSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      +A    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAIATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|328948413|ref|YP_004365750.1| flagellar hook-basal body protein [Treponema succinifaciens DSM
           2489]
 gi|328448737|gb|AEB14453.1| flagellar hook-basal body protein [Treponema succinifaciens DSM
           2489]
          Length = 463

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/498 (11%), Positives = 121/498 (24%), Gaps = 55/498 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++       +   N   +   I  NI N +   + +                        
Sbjct: 1   MMRSLYAGVSGLQNHQTRMDVIGNNISNVNTYGFKKGRATFQDMISQQINGAARPTEEVG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V        ++  + +       L    +          F  LK         + +   
Sbjct: 61  GVNPKEVGLGMSVATIDTIFTQGNLQTTGNTTDLAIQGNGFFVLKN-------GDETFYS 113

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                         N +  +  +  +       Q   TSA     +     K+      N
Sbjct: 114 RAGVFGTDSNGTLVNPANGLRVQGWMAEDVNGRQVVRTSATPTDLVIPVGQKDPPKATEN 173

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +                   +  +  D      V+       I I     N + + +  +
Sbjct: 174 V-----------RYFCNLNKNTPEIPDNPTADQVIEGTWQTEIDIYDTYGNAHQVQMNFA 222

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                       +N +  N+    +       DGV  +                    SV
Sbjct: 223 KVPGNPNQWTVTVNVDPDNADFTQTRIGFGTTDGVQNTYTLNFDNTGK--------LQSV 274

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V    NQ +    +++ +         ++   P     +        +   I        
Sbjct: 275 VDSAGNQSNPQGEIVLQASYAVADSNADANGNPYRQTFNLNLGTIGSMENTI-------T 327

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q  S  +   +     K    +   +     +   Y +   +      +A       L +
Sbjct: 328 QAASKSTTKANYQDGYKLGYLDNFKIDQSGIITGVYSNGSVRTIGQVAMASFTNQGGLEK 387

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N   + E   S   ++          +         V+L E+L+ +I  ++ +  + 
Sbjct: 388 KGDN--TYAESINSGMANIGESGTQGKGSMLSGTLEMSNVDLTEQLTDMIVTQRGFESNA 445

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K I   D ML+T+L   +
Sbjct: 446 KTIQTGDSMLETVLGLKR 463


>gi|209695756|ref|YP_002263686.1| flagellar hook-associated protein FlgK [Aliivibrio salmonicida
           LFI1238]
 gi|208009709|emb|CAQ80013.1| flagellar hook-associated protein type 3 FlgM [Aliivibrio
           salmonicida LFI1238]
          Length = 626

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 124/338 (36%), Gaps = 16/338 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L  + N        A +Q  +   NI N + + + R+  +   +             V
Sbjct: 1   MGL-DLLNLGTQGVLTAQRQLNTTSHNINNVNTEGFSRQSVVQETNMPHWVSGANLGAGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   R          L+  ++ +      ++   +   M +           I+   D+
Sbjct: 60  HVAAVRRSFDQFATNELNLSTTNLNYSMDTEANLDVLTNMMS-SIGAKRIPENINDWFDA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +++ S + +E    K V++ +  + Q+ N     V++  AD +K+++L +  +     EL
Sbjct: 119 VKTLSDSPNEIGARKVVLEKSRLISQSLNDFYENVRQQNADVNKKMDLTVERMNGIALEL 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +          +D +D+ + L++++S+   ++   R+N +       G  +  +
Sbjct: 179 KDINKMMVKTP---GPHNDLMDRHEKLIKELSQYTKVTITKRDNENSFNVLIGGGHMLVS 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                  + +       +     ++G  V + Q  ++  GK+ +L ++RD  +P   ++L
Sbjct: 236 GTESSQLKMIQGTPDPLQRRLAMVEGNGVKAIQHDSI-GGKLSSLFELRDKTIPTIMDEL 294

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
             +A       +     A +     G  I   +     
Sbjct: 295 GRVAVGFSSEVNRLQSQAIDLRGQVGANIFSDVNSEQA 332



 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/359 (10%), Positives = 105/359 (29%), Gaps = 13/359 (3%)

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               ++   F    + +  I  +  +      S + R  S+   +   +     S  ++ 
Sbjct: 271 SIGGKLSSLFELRDKTIPTIMDELGRVAVGFSSEVNRLQSQAIDLRGQVGANIFSDVNSE 330

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
             +  R ++    S  IG+      ++  ++   D    ++     +         +   
Sbjct: 331 QAVRSRAIIPGDSSAEIGVFI----DDISLLKAGDYALKYDGSQYTVTRPTGEVQRLDPT 386

Query: 249 SNPIFIDGVVVSSNQGSAVPKGK---------IKALLQIRDSVVPIFQNQLDEMARVLIG 299
            NP       +       +  G+             +++  +       Q    +     
Sbjct: 387 GNPSTFFLDGMRVEIREPLSAGERILLRPTRLAAGDMKLEMNEAEKIAAQSYASSATFAT 446

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             ++   +         + I+           +G           +   +       +S 
Sbjct: 447 GNAKFKVLQSGDLKEFQVVISPAANQFAVLDMKGKMLLEPQTYPPKGPVTVGGTTFELSG 506

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N K  A          +      +           T+++  +N    +   ++ + 
Sbjct: 507 GAAANDKFAANLVPSEGDNGNLLLMQGLQTRKVMDEGRSTVIDLYQNVNTEVGLKKATAT 566

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L   ++V         ++  GVNL EE + ++K +Q+Y  S++++   D+   T+L+ 
Sbjct: 567 RLTEVARVETEAAQSRVASVSGVNLDEEAANMMKFQQAYMASSRIMKAADETFNTILQL 625


>gi|163750564|ref|ZP_02157802.1| hypothetical flagellar hook-associated protein [Shewanella benthica
           KT99]
 gi|161329719|gb|EDQ00708.1| hypothetical flagellar hook-associated protein [Shewanella benthica
           KT99]
          Length = 637

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 121/409 (29%), Gaps = 24/409 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+  + N A+     +  Q A    NI N + + Y R+    +                
Sbjct: 1   MSM-DLLNIARTGVLASQAQLAVTSNNIANVNTQGYHRQVAEQSSLESQRLGDHFYGAGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +        + L    +   + +  Q+  +  + + +      S    ++ L  S
Sbjct: 60  YISDVKRIYNEYAARELRIGQTGASEAQTTQTKMSELDQLFSQ--IGKSIPQGLNDLFAS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L S +    +  +   V+ +A ++  N N     +       + +I      +     EL
Sbjct: 118 LNSLADLPDDMGIRGMVLGSAGQLADNLNQMQSHLDGQMKQTNDQIAGITDRINEISKEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +             LD+++ L+Q++S+   ++ I  +     +       L   
Sbjct: 178 GQLNQELMKSQGEDAQ---LLDRQNALIQELSQYAQVNVIPLDTGAKSIMLGGAVMLVSA 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                    +             I     + +       G++ AL   RD  +   + +L
Sbjct: 235 EVSMSLGTMVGDPHPGELRVVAKIGSQSQAIDPAKM--GGQLGALFAFRDETLIPAELEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +++  +  +F++ +    +     G  I   I D    + +    +             
Sbjct: 293 GQLSLGVADAFNQANSQGFDLNGEMGQNIFKDINDAAMSVGRVGGFSSNAGTA------N 346

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           LR           N   L           D+   +     + G   + T
Sbjct: 347 LRVNIDDVGLLSGNSFELKYTAPATYELKDTVTGSVTPLTLTGTQLDGT 395



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/409 (10%), Positives = 108/409 (26%), Gaps = 17/409 (4%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +M      + S    +             +              ++   F      +   
Sbjct: 229 VMLVSAEVSMSLGTMVGDPHPGELRVVAKIGSQSQAIDPAKMGGQLGALFAFRDETLIPA 288

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             +  +          +  S+   +N  +        +       R       +    + 
Sbjct: 289 ELELGQLSLGVADAFNQANSQGFDLNGEMGQNIFKDINDAAMSVGRVGGFSSNAGTANLR 348

Query: 209 TIVRN-------NNDMVVYTSDGTTLFETVPRDIN--FEKMNSYTVTSESNPIFIDGVVV 259
             + +       + ++         L +TV   +            T+  +     G   
Sbjct: 349 VNIDDVGLLSGNSFELKYTAPATYELKDTVTGSVTPLTLTGTQLDGTNGFSIHIDSGAFA 408

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
             ++    P     A + +  +          ++      S +    +   +   P    
Sbjct: 409 DGDKFEIRPSSGAAAGISVVMADGRGIAAAAPKITADTANSGNISVEMVSVNRGDPAFPP 468

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN--- 376
                  +      + E    N      P+        +  F ++V   AG  D      
Sbjct: 469 TGSELTFEINTTTSMFEVFDANGTSLGAPAAYAPPSISAHGFSFDVATTAGATDRFTFDL 528

Query: 377 -----HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
                   ++     + +     +   TL +  + +   +      +      +Q V+  
Sbjct: 529 SFAPGDNSNAVTMANLSEAKLMNSGGSTLSDVYQGTKISVGGKAKAADIAAGTAQSVYLQ 588

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +  GVNL EE + L++ +Q+Y  S +++   +++ +TLL  V+
Sbjct: 589 AYNRVQSESGVNLDEEAANLMRFQQAYQASARIMTTANEIFETLLNAVR 637


>gi|254225807|ref|ZP_04919412.1| flagellar hook-associated protein FlgK [Vibrio cholerae V51]
 gi|125621713|gb|EAZ50042.1| flagellar hook-associated protein FlgK [Vibrio cholerae V51]
          Length = 624

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 122/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDFAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LAVSFSHEVNTMQAQGLDLRGKVGSALFTDVN 328



 Score = 93.6 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    ++   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLAVSFSHEVNTMQAQGLDLRGKVGSALFTDVNLDVLARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAADIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|268589172|gb|ACZ06862.1| flagella hook-associated protein [Xanthomonas axonopodis pv.
           glycines]
          Length = 624

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 130/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   ++++  A D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTI--GSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSASS--LGGQIGVLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399



 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/446 (8%), Positives = 115/446 (25%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQAAAPDMLDQRDALVSKLVGFTGGTAVIQDGGFMNVFTAGGQPLVVGTTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T      + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGVLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S       +   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTVAANPSNAGSASLSASFSNVSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++   +  +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKAINASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             ++    +       +      +       + +       A         +        
Sbjct: 419 SVAITDPSRIAAATPVKATATVANLGTGKISDVKVTNAQNPALLTPSSIEFIDANQYTID 478

Query: 339 CVNPQYRSNPSFLRDGG----SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              P   +    +   G            +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLANIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      +       +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624


>gi|316932791|ref|YP_004107773.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           DX-1]
 gi|315600505|gb|ADU43040.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           DX-1]
          Length = 623

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/453 (13%), Positives = 138/453 (30%), Gaps = 25/453 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55
           MSL    + A           + +  N+ NA+   YVR+           +   V V   
Sbjct: 1   MSLGDALSIAMAGLRVNQASMSLVSSNVANAETPGYVRKTVNQGVTVSGQTGTGVQVNGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +  +     L    S      L   F    + +  D +   +     + L  ++++ +
Sbjct: 61  NRQLDDYVLAQLRTEISGASYASLRSDFLGQLQGLFGDPNSTGTLESSFNGLTTAMQALA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         V++ A+ +    N  +  +Q +R+  +  +   +      L ++  +N 
Sbjct: 121 TSPDSTSARIGVLNAAQALAAGLNAMSNGIQTLRSGCEAGLTDAVGTANNLLKQIATINT 180

Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            I+                LDQRD  + ++S+++ I  +    N + V+T  G  L    
Sbjct: 181 QIRTNPQGGTSTDAATAALLDQRDQAINQLSQLMDIRIVTNGANQVSVFTGSGVQLAGME 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDG----------VVVSSNQGSAVPKGKIKALLQIRDS 281
              ++FE   +    +  +   +               + +  S++  GK+ A +++RD+
Sbjct: 241 AATLSFEAQGTVNPGTTWSSNSMLSELGSVTVSYASGSTIDITSSLKSGKMAAYIELRDN 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA------DGIKDLDNKLCQGIS 335
            +   Q QLD+ A  L  S S+K        +      A           ++       +
Sbjct: 301 TLVTAQTQLDQFAATLSSSLSDKTTAGTPVTSGASAGFALDLSGMKSGNTINIAYTDVAT 360

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                    R +   L      +     +      +  +        N       +    
Sbjct: 361 GLQHTVTVVRVDDPRLLPLPQTATNDPNDYVVGIDFSGVSGSVESQLNAALYGRNLQFTG 420

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           T+  +          +      +    +    V
Sbjct: 421 TSPNINVLDNAGFSTVNSASVTTTVTGLAGGSV 453



 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/438 (12%), Positives = 130/438 (29%), Gaps = 10/438 (2%)

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
              T                 + + Q   ++        +S             +     
Sbjct: 187 QGGTSTDAATAALLDQRDQAINQLSQLMDIRIVTNGANQVSVFTGSGVQLAGMEAATLSF 246

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
               + N        +++     V  ++ + +         + K            ++  
Sbjct: 247 EAQGTVNPGTTWSSNSMLSELGSVTVSYASGSTIDITSSLKSGKMAAYIELRDNTLVTAQ 306

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           T ++      ++S  D                  + +S +   N   + YT   T L  T
Sbjct: 307 TQLDQFAATLSSSLSDKTTAGTPVTSGASA-GFALDLSGMKSGNTINIAYTDVATGLQHT 365

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD---SVVPIFQ 287
           V      +        + +N      V +  +  S   + ++ A L  R+   +      
Sbjct: 366 VTVVRVDDPRLLPLPQTATNDPNDYVVGIDFSGVSGSVESQLNAALYGRNLQFTGTSPNI 425

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N LD      + S S    + G +     + + +      +         +    Q  S 
Sbjct: 426 NVLDNAGFSTVNSASVTTTVTGLAGGSVEVPLFNDNGSPYSGSINVAGNQMTGYAQRISV 485

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------VTLL 401
            + L    S    +  +    AG     +        +  +   A    +       +L 
Sbjct: 486 NADLVKDNSKLVVYSTSPATAAGDTARPDFMIKQMMNSKYYYSAATGIGSDTAPFKGSLQ 545

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
            Y +  +     N + +  L     VV N + + +S + GVN+ EE++ L+ ++ +Y  +
Sbjct: 546 SYLQQFVSQQGSNAAAAKQLSEGQNVVLNTLQQKFSASSGVNMDEEMAHLLSLQNAYAAN 605

Query: 462 NKLIMFTDKMLQTLLEGV 479
            +++   ++M Q+L++ +
Sbjct: 606 ARVMSTINQMYQSLMQAI 623


>gi|223040539|ref|ZP_03610811.1| flagellar hook-associated protein FlgK [Campylobacter rectus
           RM3267]
 gi|222878174|gb|EEF13283.1| flagellar hook-associated protein FlgK [Campylobacter rectus
           RM3267]
          Length = 617

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/441 (12%), Positives = 132/441 (29%), Gaps = 27/441 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + +  +      + A  Q  +   NI NADN++Y R+  + +                 V
Sbjct: 4   IFSSLHIGMTGLDAAQTQITTTGHNITNADNEHYTRQRVVQSAREAFHDIPGDIGTGTQV 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T    +       L   +  +      +            D  +      +    ++  
Sbjct: 64  DTVVRVHDEFTFARLRTSNINLESTEYKKKILEEISQRF-PDLKSVGIGRDLQNYFNAWN 122

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N +E      +++ A  + ++ N +   + KI+ D D +IE+ ++ + ++  ++  
Sbjct: 123 NLASNPTEGSQKINLLNTASTLAKSINKAHDMLTKIQKDVDSQIEVTVNEINKYAKQIAQ 182

Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    +  +  A+D  D+RD L   +S+++G+S          V  +      +  
Sbjct: 183 INKEIVRVESVGNTRANDLRDKRDQLELAMSKLVGMSVFKGELQGSNVDPTVTDMGTKHQ 242

Query: 232 PRDINFEKMNSYTV-----------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                F  ++  T            +      F        +    +  GK+ A L +R 
Sbjct: 243 INISGFNIVDGVTYHPLKIDKMNGNSDFKGVYFERDDGKKVDLNGRISGGKLGAALDLRG 302

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN----KLCQGISE 336
             +       D   +  I + +       N  N      A      D        + +  
Sbjct: 303 RKMDDSGEFQDGTIQKYIDNLNTFAKGIINETNNIYAKSAVENAVTDEIKGLSDSRTLMN 362

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                     +     + G    +   N+       D         + N   D     N+
Sbjct: 363 FNNDIKHGSFDVVVYNNQGQEVARKTININASTSINDNTRGNSIVRDFNSDTDDNGDNNS 422

Query: 397 NVTLLEYARNSIGWLEKNRSD 417
              + +Y + +  +       
Sbjct: 423 LNDVDDYFQANYQYDAATGRG 443



 Score = 94.3 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 121/449 (26%), Gaps = 11/449 (2%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
           Y ++          V  V     N       L      +          ++ +      +
Sbjct: 176 YAKQIAQINKEIVRVESVGNTRAND------LRDKRDQLELAMSKLVGMSVFKGELQGSN 229

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            + + T   +K + ++  +   +         ID                   + D +  
Sbjct: 230 VDPTVTDMGTKHQINISGF-NIVDGVTYHPLKIDKMNGNSDFKGVYFERDDGKKVDLNGR 288

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           I          L    + +         +    +       ++ + + I   S +     
Sbjct: 289 ISGGKLGAALDLRGRKMDDSGEFQDGTIQKYIDNLNTFAKGIINETNNIYAKSAVENAVT 348

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
           D +   SD  TL        +                     + +S   +   +G     
Sbjct: 349 DEIKGLSDSRTLMNFNNDIKHGSFDVVVYNNQGQEVARKTININASTSINDNTRGNSIVR 408

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
               D+      N L+++      ++         +  V     A               
Sbjct: 409 DFNSDTDDNGDNNSLNDVDDYFQANYQYDAATGRGTFGVIPKKNAGEYSVAFVDKGTNFP 468

Query: 336 ETICVNPQYRS----NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
             I +N  +      + S   +      K         G  ++ N       K  IF   
Sbjct: 469 GIIGLNRVFEGGEAKDMSVKSELMENPHKLKAYSNPTPGNNEVANDMVQMQYKKIIFYSD 528

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
              +   ++  Y R     L      ++DL+  +  +       + +  GVNL EEL+ L
Sbjct: 529 KHADKEESVEGYYRYITTDLASETQSNNDLNDANAAIHKVAMSEHQSVSGVNLNEELTNL 588

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I+ + SY  + K+I   +KML TLL   +
Sbjct: 589 IRFQSSYGAAAKIITTVEKMLDTLLMLKQ 617


>gi|212639558|ref|YP_002316078.1| flagellar hook protein FlgE [Anoxybacillus flavithermus WK1]
 gi|212561038|gb|ACJ34093.1| Flagellar hook protein FlgE [Anoxybacillus flavithermus WK1]
          Length = 460

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/495 (10%), Positives = 131/495 (26%), Gaps = 52/495 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L           N   +   I  NI N +   Y +                       +
Sbjct: 1   MLRSMFTGIGGIRNFQYKLDVIGNNISNVNTYGYKKARVTFKD----------------L 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + + A +S+ G +                +         +  +       S   +   
Sbjct: 45  VSQQISAATSSTGTR-------------GGINGKQIGLGSGLGSIETIHTQGSTQTTSRP 91

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  +   VV + N        + +      +L  + +   +    V N +      
Sbjct: 92  LDLALGGDGFFVVGSINDV-----TLISMDGPAGKLGTNKVNTGVPIDRVFNLSFTRAGN 146

Query: 183 SKHDAHDFLDQRD-VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
              D + ++   D   L   + I  + T++ N   +     D  T   +   +   +  +
Sbjct: 147 FYLDEYGYIVNSDGQYLIGEAAIKDVDTVITNAPHVAQARRDLETFLNSTLVNFIKKWKD 206

Query: 242 SYTVTSESNPIF---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
            +T   ++NP         + + N        KI       D+ +       ++      
Sbjct: 207 EFTKDPDNNPTTQTDFVNFIRNFNNELKNLNEKITGKTDPNDTTLATAGTYFNDRVSPKA 266

Query: 299 GSFS-----EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                    E +    ++       +   ++ +   +          +     N +    
Sbjct: 267 SINPVPLLPENEADWPDTLAEAEKMMGPYLEGISGFVESVQQVLQDYSEPKYGNVTSFEP 326

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G +          +     +     +   K      +A       L +   N+      
Sbjct: 327 -GLIQIPKTAKSFGITADGKVTFIDSNGQLKIAGQILLAQFPNPTGLEKMGGNTFKETNN 385

Query: 414 NRS--------DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +            ++L          I         V+L EE + +I  ++ +  + ++I
Sbjct: 386 SGKLDRNANGLTINELSRPGLNGAGEIISGALEMSNVDLSEEFTEMIVAQRGFQANTRII 445

Query: 466 MFTDKMLQTLLEGVK 480
             +D++LQ L+   K
Sbjct: 446 TTSDEILQELVNLKK 460


>gi|228958033|ref|ZP_04119769.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801658|gb|EEM48539.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 437

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKNPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +     +G++  +     Y +  +      +     +
Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSDLTNYPTGKTISTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|219670134|ref|YP_002460569.1| hypothetical protein Dhaf_4124 [Desulfitobacterium hafniense DCB-2]
 gi|219540394|gb|ACL22133.1| protein of unknown function DUF1078 domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 426

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 110/478 (23%), Gaps = 53/478 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +   N   +   +  NI N +   + R     +                  
Sbjct: 1   MLRSLYSAISGLKNHQIKMDVVGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQ- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +   Q  L     ++ ++M+     N   +            +        
Sbjct: 60  -------GGTNPAQVGLGSMVSSIDQIMTTGSSQNTGKSTDAMINGRGFFVFRNAGQIVY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                    +        +   V      A+             L   +     ++F   
Sbjct: 113 GRAGAFSQDQNGYLTDPGTGAFVLGQMWGANDR---------EILEWGSAPLTPLRFNIG 163

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S     +    +  L   +        +            DG TL ++    I F K  +
Sbjct: 164 SYPPEPEGGIIKINLGDFVQNGSNYEYVNPALIGASATVPDGGTL-DSTTGKITFTKDPA 222

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              + +   I I  +        A    +  ++    +  +                   
Sbjct: 223 DEASGDPPAIEITDIDYDKLTIPAGDFVQKGSVYVYENPDLVGA---------------- 266

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                      +    +           +         V+    
Sbjct: 267 -----------DLEDITDGSFDPKTGTITLNAAPPSAGVEIEGVDGRLRAKLDEVTIDGN 315

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             +  +            S ++      +A    +  L     N       N S   D+ 
Sbjct: 316 GIISGIYSNGKG------SASRRIGQLAIANFANDAGLQNVGNNFYA--ATNNSGIADIG 367

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   +I  +      V+L +E + +I  ++ +  ++++I  +D +LQ L++  +
Sbjct: 368 AAGTAGRGNIIPNSVEMSNVDLSQEFTDMIVTQRGFQANSRVITVSDSLLQELIDLKR 425


>gi|259417834|ref|ZP_05741753.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B]
 gi|259346740|gb|EEW58554.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B]
          Length = 422

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 128/488 (26%), Gaps = 74/488 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M++ +  N         S + A+I  NI NA    Y R  T            +      
Sbjct: 1   MTISSSLNAGVAGLAANSTRLAAISDNIANASTAGYKRVVTSFESMVISQNGGSYAAGGV 60

Query: 56  RSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYN-NSPTHYISKLRDSLE 112
              N  M D+   L + S+A       + F  +  +   D   +           R + E
Sbjct: 61  SVNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVDSGGDPTMLLTTSGSFRTNDE 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y    S  +L     +    +      +   ++ +R D         S L    +    
Sbjct: 121 GYLTTTSGLVLLGWPANADGTIPTVARDTDGPLEPVRFD--------TSQLSAAPTTAVS 172

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +   +   +A    A D  +        +                      G    + V 
Sbjct: 173 LGVNLPAGSAVAGAAGDPEENAIQYYDNL---------------------GGQQELDIVY 211

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         ++     + G    +   SA  KG +  +              +  
Sbjct: 212 TPTGANDNEWTMTLTDGATGTVVGEYTLTFDDSATGKGTLDTVATTTGGAYDPASGTI-- 269

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                                            +       I   I V  Q  S  S   
Sbjct: 270 ---------------------------------IVTTDSGPIEIEIGVMTQLSSAFSAAT 296

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                 +   +    +     +   Y +  ++     P+A +     +     +S  ++ 
Sbjct: 297 IEKDGYEAASFAGVEVDEGGFVHALYENGSSRIVYQIPLADMPNANGMKSL--DSQTFMP 354

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S ++ L          ++       G ++  EL+ +I+ +++Y+ + K+I   D+ML
Sbjct: 355 SPDSGAYYLWDAGAGPTGEVASYRQEESGTDVATELTSMIQTQRAYSSNAKVIQTVDEML 414

Query: 473 QTLLEGVK 480
           Q      +
Sbjct: 415 QETTNIKR 422


>gi|59712475|ref|YP_205251.1| flagellar hook-associated protein FlgK [Vibrio fischeri ES114]
 gi|59480576|gb|AAW86363.1| flagellar hook-associated protein 1, FlgK [Vibrio fischeri ES114]
          Length = 626

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 128/349 (36%), Gaps = 16/349 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L  + N        A +Q  +   NI N + + + R+  +   +             V
Sbjct: 1   MGL-DLLNLGTQGVLTAQRQLNTTSHNINNVNTEGFSRQSVVQDTNMPHWVSGANLGAGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   R          L+  ++ +      ++   +   M +           I+   D+
Sbjct: 60  HVAAVRRSFDQFATNELNLSTTNLNYSMDTEANLDVLTNMMS-SIGAKRIPENINDWFDA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +++ + + +E    K V++ +  V Q+ N     V++  AD +K+++L +  +     EL
Sbjct: 119 VKTLADSPNEIGARKVVLEKSRLVSQSLNDFYENVRQQNADVNKKMDLTVERMNAIALEL 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +          +D +D+ + L++++S+   ++   R+N +       G  +  +
Sbjct: 179 KDINKMMVKTP---GPHNDLMDRHEKLIKELSQYTKVTITKRDNENSFNVLIGGGHMLVS 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                  + +       +     ++G  + + Q  ++  GK+ AL ++RDS +P   ++L
Sbjct: 236 GTNASELKMIAGSPDPLQRRLAMVEGKGMKAIQHDSI-GGKLSALFELRDSTIPTIMDEL 294

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             +A       +     A +     G  I   +        + I +   
Sbjct: 295 GRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSEQAARSRAIVQGGS 343



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 103/359 (28%), Gaps = 13/359 (3%)

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               ++   F      +  I  +  +      S + R  S+   +   I     S  ++ 
Sbjct: 271 SIGGKLSALFELRDSTIPTIMDELGRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSE 330

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                R ++    S  +G+      ++  ++   D    ++     +         +   
Sbjct: 331 QAARSRAIVQGGSSAEVGVFI----DDISLLKAGDYALKYDGSQYTVTRPTGEVQRLDPT 386

Query: 249 SNPIFIDGVVVSSNQGSAVPKGK---------IKALLQIRDSVVPIFQNQLDEMARVLIG 299
            NP       +       +  G+             +++  +       Q    +     
Sbjct: 387 GNPSTFFLDGMRVEIREPLSAGERVLLRPTRIAAGEIKLEMNEAEKIAAQSYASSATFAT 446

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             ++   +   +     + I+           +G           +   +       ++ 
Sbjct: 447 GNAKFKVLQSGALKEFQVVISPAANQFAVLDMKGKMLLEPQTYPPKGPVTVGGTTFELTG 506

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N K  A          +      +           T+++   N    +   ++ + 
Sbjct: 507 GAAANDKFAANLVPSEGDNGNLLLMQGLQTRKVMDEGRSTVIDLYENVNTEIGLKKATAS 566

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L   S+V         ++  GVNL EE + ++K +Q+Y  S++++   D+   ++L+ 
Sbjct: 567 RLSEVSRVENEAAQSRVASVSGVNLDEEAANMMKFQQAYMASSRIMKAADETFNSILQL 625


>gi|30019797|ref|NP_831428.1| flagellar hook protein FlgE [Bacillus cereus ATCC 14579]
 gi|229043508|ref|ZP_04191218.1| Flagellar hook protein FlgE [Bacillus cereus AH676]
 gi|229127079|ref|ZP_04256078.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4]
 gi|229149956|ref|ZP_04278184.1| Flagellar hook protein FlgE [Bacillus cereus m1550]
 gi|296502353|ref|YP_003664053.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171]
 gi|29895342|gb|AAP08629.1| Flagellar hook protein flgE [Bacillus cereus ATCC 14579]
 gi|228633637|gb|EEK90238.1| Flagellar hook protein FlgE [Bacillus cereus m1550]
 gi|228656432|gb|EEL12271.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4]
 gi|228725886|gb|EEL77133.1| Flagellar hook protein FlgE [Bacillus cereus AH676]
 gi|296323405|gb|ADH06333.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171]
          Length = 437

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKNPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +     +G++  +     Y +  +      +     +
Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|197336362|ref|YP_002156694.1| flagellar hook-associated protein FlgK [Vibrio fischeri MJ11]
 gi|197317852|gb|ACH67299.1| flagellar hook-associated protein FlgK [Vibrio fischeri MJ11]
          Length = 626

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 128/349 (36%), Gaps = 16/349 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L  + N        A +Q  +   NI N + + + R+  +   +             V
Sbjct: 1   MGL-DLLNLGTQGVLTAQRQLNTTSHNINNVNTEGFSRQSVVQDTNMPHWVSGANFGAGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   R          L+  ++ +      ++   +   M +           I+   D+
Sbjct: 60  HVAAVRRSFDQFATNELNLSTTNLNYSMDTEANLDVLTNMMS-SIGAKRIPENINDWFDA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +++ + + +E    K V++ +  V Q+ N     V++  AD +K+++L +  +     EL
Sbjct: 119 VKTLADSPNEIGARKVVLEKSRLVSQSLNDFYENVRQQNADVNKKMDLTVERMNAIALEL 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +          +D +D+ + L++++S+   ++   R+N +       G  +  +
Sbjct: 179 KDINKMMVKTP---GPHNDLMDRHEKLIKELSQYTKVTITKRDNENSFNVLIGGGHMLVS 235

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                  + +       +     ++G  + + Q  ++  GK+ AL ++RDS +P   ++L
Sbjct: 236 GTNASELKMIAGTPDPLQRRLAMVEGKGMKAIQHDSI-GGKLSALFELRDSTIPTIMDEL 294

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             +A       +     A +     G  I   +        + I +   
Sbjct: 295 GRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSEQAARSRAIVQGGS 343



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 103/359 (28%), Gaps = 13/359 (3%)

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               ++   F      +  I  +  +      S + R  S+   +   I     S  ++ 
Sbjct: 271 SIGGKLSALFELRDSTIPTIMDELGRVAVGFSSEVNRLQSQAIDLRGQIGANIFSDVNSE 330

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                R ++    S  +G+      ++  ++   D    ++     +         +   
Sbjct: 331 QAARSRAIVQGGSSAEVGVFI----DDISLLKAGDYALKYDGSQYTVTRPTGEVQRLDPT 386

Query: 249 SNPIFIDGVVVSSNQGSAVPKGK---------IKALLQIRDSVVPIFQNQLDEMARVLIG 299
            NP       +       +  G+             +++  +       Q    +     
Sbjct: 387 GNPSTFFLDGMRVEIREPLSAGERVLLRPTRIAAGEIKLEMNEAEKIAAQSYASSATFAT 446

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             ++   +   +     + I+           +G           +   +       ++ 
Sbjct: 447 GNAKFKVLQSGALKEFQVVISPAANQFAVLDMKGKMLLEPQTYPPKGPVTVGGTTFELTG 506

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N K  A          +      +           T+++   N    +   ++ + 
Sbjct: 507 GAAANDKFAANLVPSEGDNGNLLLMQGLQTRKVMDEGRSTVIDLYENVNTEIGLKKATAS 566

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L   S+V         ++  GVNL EE + ++K +Q+Y  S++++   D+   ++L+ 
Sbjct: 567 RLSEVSRVENEAAQSRVASVSGVNLDEEAANMMKFQQAYMASSRIMKAADETFNSILQL 625


>gi|229189850|ref|ZP_04316861.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876]
 gi|228593658|gb|EEK51466.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876]
          Length = 437

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSLTLTSDKMETAIEGKGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDESVQKNPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +     +G++  +     Y +  +      +     +
Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMTYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSAEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|77359722|ref|YP_339297.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis TAC125]
 gi|76874633|emb|CAI85854.1| flagellar biosynthesis; hook protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 454

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 122/483 (25%), Gaps = 41/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55
            FN A +    A +       NI N +   +                      N   V  
Sbjct: 2   SFNIALSGLAAAQKDLNVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++      + + A  + + A D             + + +++ 
Sbjct: 62  TMVAQQFHQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFT----YTRAGAFKLNKDNFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +   L    +D +     + + S     +I   +              L   ++   
Sbjct: 118 VDANGSFLQGFPVDPSTGDTTSVSLSTSSALQIPDSSGSPRATSSVYSSFNLDSRSI--- 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           +  +      S    +   +   + + ++           P   
Sbjct: 175 ----------APTIAFNPTESATYNSSTSTTVYDSLGEPHVLQLFFVKS------DPAVP 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E   S   T +      +GV  +    + +         Q   S +P   +    ++ 
Sbjct: 219 GNENQWSVHSTLDGKSFGANGVEQTVAPYTPMT------TFQFDSSGLPQSTDGTPNVSN 272

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                            +      A     ++            +  QY S         
Sbjct: 273 TFNPLSIAAGGGGNAGLSDLLTNGATFPAPVEINWRDETGTANKIPTQYASRFEVKALEQ 332

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        ++     ++  Y +  +       +   + +  L +      GW     
Sbjct: 333 DGATVGRLAGIDIGADGKVVASYSNGDSTFLGQVAMVRFSNSQGLQQVGS--TGWKASIA 390

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S              +I+ S      VNL  EL  LI  ++++  +++ +     + Q++
Sbjct: 391 SGEPIAGEPGSGTLGNINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTIQQSI 450

Query: 476 LEG 478
           L+ 
Sbjct: 451 LQI 453


>gi|156973594|ref|YP_001444501.1| flagellar hook-associated protein FlgK [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525188|gb|ABU70274.1| hypothetical protein VIBHAR_01297 [Vibrio harveyi ATCC BAA-1116]
          Length = 637

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 130/395 (32%), Gaps = 26/395 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++     +L                 +      +++  D++++
Sbjct: 63  NVRRSWDEFAVKELNLSTTNYAN-KLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+ +    N     V++     +K +++ I  + +   E+  V
Sbjct: 122 MADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVTNKSLDMGIERVNQLAVEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L++++SE   ++   R N++   V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    S  V      +   G + +         GKI ALL++RD  +P   ++L  
Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---------LDNKLCQGISETICVNPQ 343
           +A       +       +     G  +   +              +    ++  I     
Sbjct: 297 LATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAVYINDISA 356

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            +     LR  G        N + +    D  N +
Sbjct: 357 LKGGEYSLRYDGDSYAVTKPNGETVKLNTDAGNAF 391



 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +    + +A         +   +           +    L  G   + KF  N+    G 
Sbjct: 476 DTKGNVLMAPQPYPPTGPVSVSLPSNHPAYNNGGATVFELSAGALANDKFTANLVPSEGD 535

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              +    +                  T++    N    +    S +  L   +Q+    
Sbjct: 536 NGNLRKMQNIQTDKK------MNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEA 589

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             E  ++  GVNL EE + ++K +Q+Y  S++++   +    T+L+ 
Sbjct: 590 AQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636


>gi|220922288|ref|YP_002497590.1| flagellar hook-associated protein FlgK [Methylobacterium nodulans
           ORS 2060]
 gi|219946895|gb|ACL57287.1| flagellar hook-associated protein FlgK [Methylobacterium nodulans
           ORS 2060]
          Length = 623

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/463 (15%), Positives = 142/463 (30%), Gaps = 25/463 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT--MTTISPENVTVVTQRSENKN 61
           L   N A             + +N+ N     YV+R    ++      V   T       
Sbjct: 3   LNALNTATAGLQVTQAAIGIVSQNVANQSTPGYVKRTLTPVSQSGNAGVGTGTVTRVLDA 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              K L   +S      L+ S  +  + +        +    ++    SL+S + + S  
Sbjct: 63  AAQKQLRLETSGAAYTDLVASIHSQIDALYGTPGSEAALDGVVNAFAQSLQSLASDPSSA 122

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               TV+ +A  +    +  A  VQ++R   +  +  ++++  + LSE+  +N  I   T
Sbjct: 123 PNRSTVLSDAGRLANRISDVANGVQELRTGLESRLGADVASASKLLSEIAALNVKIVGST 182

Query: 182 ASKHD---AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN-- 236
            S      A + LDQRD  + ++++ + + T    +  + V TS G TL +         
Sbjct: 183 GSGGGDSLAAELLDQRDQRITELAQSMDVQTNAVGDGSVTVLTSSGVTLVDHGSAATLAF 242

Query: 237 -----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                      +    S             G  +      A+  G I A L +RD  +  
Sbjct: 243 DGRSQLGPSAVYSTDASMRGVGTITATTPSGARIDLVADKAIRSGSIAAALTLRDDTLVQ 302

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV----- 340
            Q QLD++A  L  + S+++     +    G      +  L       ++          
Sbjct: 303 AQRQLDDLAAGLSRAMSDRNVSGTAATGEGGSGFDIDLTGLQAGNTVTLALRTSGVARNV 362

Query: 341 --NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
              P   + P+ +          L    ++AG P        S          A      
Sbjct: 363 ILMPTMGNAPAAIDPNLMDDPTALVVPFDIAGGPSTFAGAIASALGTGFAVSAAPSGGAG 422

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
            +   A                    ++     +     +  G
Sbjct: 423 AVRILASGLTLTGATASITVPTSATDTRNGAEQLPLFVDSGSG 465



 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 76/256 (29%), Gaps = 7/256 (2%)

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                     +       T+   P  I G   +     A   G   A+           +
Sbjct: 366 PTMGNAPAAIDPNLMDDPTALVVPFDIAGGPSTFAGAIASALGTGFAVSAAPSGGAGAVR 425

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                +      +       A ++ N              N +  G  E           
Sbjct: 426 ILASGLTLTGATASITVPTSATDTRNGAEQLPLFVDSGSGNSVYTGSFEGGSHLTGLAQR 485

Query: 348 PSFLRD-GGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINT-----NVTL 400
            +         S    +     AG     +   D+   ++  F   +GI       + ++
Sbjct: 486 LTVNPALMADTSSLIGYAGTTGAGDAKRPSFLYDALTGRSRTFSAASGIGGISAPYSTSV 545

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            ++A++ I       + +  L    ++  +     +    GVN+ EELS LI+++ +Y  
Sbjct: 546 QDFAQSIIDAQGAAAAQAQQLDEGQKIALSTAQSRFGTQSGVNIDEELSRLIQLQSAYAA 605

Query: 461 SNKLIMFTDKMLQTLL 476
           + +++     M+ TL+
Sbjct: 606 NARVLTAAKDMIDTLM 621


>gi|197122873|ref|YP_002134824.1| hypothetical protein AnaeK_2470 [Anaeromyxobacter sp. K]
 gi|196172722|gb|ACG73695.1| protein of unknown function DUF1078 domain protein
           [Anaeromyxobacter sp. K]
          Length = 428

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/486 (8%), Positives = 101/486 (20%), Gaps = 64/486 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           MSLL   +        +S + + +  NI NA+   +         +     +        
Sbjct: 1   MSLLTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGL 60

Query: 60  -KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNNSPTHYISKLRDSLESY 114
              +          A+    L                       +      +     + Y
Sbjct: 61  GSRLAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             NL    +     D +  +    +                                   
Sbjct: 121 LVNLEGLRVQGFPADPSGALAGLPDDL--------------------------------- 147

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +                +    +  +     N       S   T+++ +   
Sbjct: 148 ----LVGTASAQPRATTRLTLKANLQADAAVPTAAWDPANPGATSNFSTTMTVYDALGAG 203

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              +     T     +   +      +   +          L   D        Q     
Sbjct: 204 HAVQVYFRKTGDGAWDWHALTDGAGVAGGTAGQLTQIAGGTLAFGDGGELTSMTQTSSFT 263

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                +    D   G+  +                        +    Q+ +  +    G
Sbjct: 264 PAGQAAPQPLDFSFGDPTSA-------------------GGTGLAGVTQFSATSASTFIG 304

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     +   + +   +      VAG      L     N +   +  
Sbjct: 305 QDGYGSGQLASVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLL--QQTP 362

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +          +         V+L E+   LI  ++++  ++K I   D++L  
Sbjct: 363 GSGQPVVGAAGSGGRASVVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSE 422

Query: 475 LLEGVK 480
           L+   +
Sbjct: 423 LIAMKR 428


>gi|228952133|ref|ZP_04114228.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807665|gb|EEM54189.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 437

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSLTLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NSGNVEYTRKGSFGVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDESVQKNPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +     +G++  +     Y +  +      +     +
Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMTYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSAEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|166712056|ref|ZP_02243263.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 624

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 131/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDGLSHEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   +++++ A D LDQRD L+ K+    G + ++++   + V+T+ G  L       
Sbjct: 180 GTI--GSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  +     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPSKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAADPLVLNGVSMVVGGT 399



 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/446 (8%), Positives = 119/446 (26%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T      + S    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LTTVADPYQPSKLQVAMQTQGQNVSLSANSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S       +   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++      +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKATNASTGSAVPMTGTGTAADPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKLCQGI 334
             ++    +       +      ++      +    +   P L     ++ +D       
Sbjct: 419 SVAITDPSRIAAATPVKATATVANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                     ++  +              +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      ++      +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D + Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTIFQAILGAVR 624


>gi|149188072|ref|ZP_01866367.1| flagellar hook-associated protein K [Vibrio shilonii AK1]
 gi|148838060|gb|EDL55002.1| flagellar hook-associated protein K [Vibrio shilonii AK1]
          Length = 622

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 126/339 (37%), Gaps = 17/339 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLNLGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNTPRQFGGQTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++ +  +    +   +   M +           ++   D++++
Sbjct: 63  NVRRSWDQFAVKELNMATTQVNYRNENLTNLDMMSGMLSSMSSKK-VPESLNDWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V+D A  + Q+ N     V++ R + +K++E+ +  + +   E+  +
Sbjct: 122 LADTPNDIGARKVVLDKANLIRQSMNDFHDTVREQRDNVNKKLEVSVERVNQIGIEIRDI 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +D+ + L++++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRSP---GPHNDLMDKHESLIKELSEYTKVTVTPRRNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ +  T +     ++G  +     S    G+++++ + RD  +P   ++L  
Sbjct: 239 ASQL-KMIDGFPDTHQHRLAIVEGKGIKP-ITSDDIGGRLESMFETRDKEIPYVLDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           ++       +E      +     G  +   +  L     
Sbjct: 297 LSIAFSEKVNELQGQGLDLNGQVGQNLFADVNTLAFAKA 335



 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/412 (10%), Positives = 115/412 (27%), Gaps = 12/412 (2%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
              +    +     + H  N  T         L+              +++         
Sbjct: 210 TKVTVTPRRNAEGFNVHIGNGHTLVSGTEASQLKMIDGFPDTHQHRLAIVEGKGIKPITS 269

Query: 139 NTSAREVQKIRADADKEIELEISN-----------LRRFLSELTVVNDAIKFKTASKHDA 187
           +     ++ +    DKEI   +             +     +   +N  +     +  + 
Sbjct: 270 DDIGGRLESMFETRDKEIPYVLDELGRLSIAFSEKVNELQGQGLDLNGQVGQNLFADVNT 329

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
             F   R V     S  + +     +               +     D   +  +  ++ 
Sbjct: 330 LAFAKARVVAPVNSSADVAVFIDDTSQLKGGEYSLKFDGANYHVTNSDGVTQSFSGPSMQ 389

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            +   + I        +    P     A +++  +       Q  E +       ++   
Sbjct: 390 LDGIRVEIGNPPAVGEKLLLRPTRDGAANMKMTTNDPKAIAAQSFEASTTFAQGDAKFKV 449

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            +  S     + ++    +       G               + L     +S   + N K
Sbjct: 450 SSVGSLKEFEVVVSPTGTEFAVTDKSGNVLLSPTPYPPTGPVTVLGTTFELSDGAMANDK 509

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             A          +      I    +  + + T+++   N    +    S +  L   ++
Sbjct: 510 FTANLNPAEGDNGNLRKMLHIQTDKSMNDGDSTVIDIYHNLNTDVGLKASTATRLQEVAE 569

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +   +     ++  GVNL EE + ++K +Q+Y  S++++   ++   T+L+ 
Sbjct: 570 LEHENAQSRVASISGVNLDEEAANMMKFQQAYMASSRVMQAANETFDTILQL 621


>gi|296282273|ref|ZP_06860271.1| flagellar hook-associated protein FlgK [Citromicrobium
           bathyomarinum JL354]
          Length = 446

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/490 (13%), Positives = 138/490 (28%), Gaps = 59/490 (12%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------- 50
             + +   +    A         NI NA +  YVRR                        
Sbjct: 3   SDLLSIGASGARAARAALEVTANNIANASSDGYVRRSVRIEEVSGGSIAGRGGDVSVSGS 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   R          L   ++ + +  +        E         +     I +   +
Sbjct: 63  RIAQVRRNADAFRQAELRRTNADLQRANVELGGLQNIEAAV----EQSGLFDSIVEFEAA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L+  + + ++      V+  AE +   FN +A  +         +   ++ NL  + +EL
Sbjct: 119 LQQLAGDPTDSARRAAVLGQAETLASKFNITASSLASAGEGLRFDANADVDNLNTYAAEL 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           + VN  +    A  +D    LDQRD LL+++S    +++    +    V  + G +    
Sbjct: 179 SRVNLRLARAGAGSNDQAALLDQRDSLLERMSGFANVNSSFAPD--GTVTVALGASPGTA 236

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                    + S T    +    IDG   +         G +          +     +L
Sbjct: 237 FVSGGTAATLTSSTNADGTLAFAIDGAPFNPG------SGSLTGASLALSD-LAAVATRL 289

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D +A  +  + +         +   G  I                               
Sbjct: 290 DGIASSIATAINTAQANGVALDGTAGQPIFS----------------------------- 320

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
               G+ +      + + AG                    +    +     E   + +  
Sbjct: 321 ----GTTAATLRVAMVSGAGLATAPAGSPAGSRDQQNLAEMRQALSAANPAEGLNSILFD 376

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    +         + + +    +     GV+L  E + LI+ +Q++  S K +     
Sbjct: 377 ISSKVAGRTVTQSALETIASSARIALEEQSGVDLDNEAANLIRYQQAFQASGKAMQVASD 436

Query: 471 MLQTLLEGVK 480
           +  TLL   +
Sbjct: 437 IFDTLLGIGR 446


>gi|119469956|ref|ZP_01612761.1| putative flagellar hook-associated protein [Alteromonadales
           bacterium TW-7]
 gi|119446666|gb|EAW27939.1| putative flagellar hook-associated protein [Alteromonadales
           bacterium TW-7]
          Length = 667

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 145/442 (32%), Gaps = 7/442 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MS   + N A +     S+   +  +NI N + + YVR  T  T      V         
Sbjct: 1   MS-FNLLNIASSGVRANSELLQTTSKNIANVNTEGYVRERTEHTTMVDNQVGKGETYRLL 59

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                + L+  +S         +     + + ++D  +NS +  I+ L ++++      S
Sbjct: 60  NQFAQEQLNRDTSNKTFFDQFVTESNRVDSLFSED--SNSLSTSINSLFNNVQESLNQPS 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +    V+ +AE +V   +  +  V   +   ++++++        + ++  +N  I  
Sbjct: 118 STVARSLVMTDAENLVNQMDRLSGIVFDQKNIVNEQLDVFTEEANGLIQKIGTLNQDIAA 177

Query: 180 KTASKH--DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              + +  DA    ++RD  ++ +SE+I I T+   N + +V+   G  +         F
Sbjct: 178 VNGTNNQADASSTYNERDKAIRDLSELIDIETLDGPNGEKLVFMGTGEAVVMQNGSFNLF 237

Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                     +   + ++G   V      +  KGKI  LL  RD V+   QNQ+ +M   
Sbjct: 238 SMRGDPDPNFKELRLDVNGGKAVPLEVDVSKLKGKIGGLLAFRDDVLVPAQNQIGQMGLA 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +  SF+E++ +  ++    G  I +               +           S L     
Sbjct: 298 IADSFNEQNKLGMDANGEIGGNIFNIPTVGGYAYTANTGSSSMTATLEAGKGSELPASDF 357

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           +      +   +    +       +   N     +               ++        
Sbjct: 358 IITYTSASTVEIQPVDNKGEPLGTASTANITAGVIDSSTITSGESFGLEINVAGAANAGD 417

Query: 417 DSHDLHMKSQVVFNHISESYSN 438
                          ++ +   
Sbjct: 418 QFQIKLNSESAANMSLATTRGE 439



 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/389 (7%), Positives = 89/389 (22%), Gaps = 9/389 (2%)

Query: 92  ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
            +           S    +      N         +             S+     + A 
Sbjct: 288 QNQIGQMGLAIADSFNEQNKLGMDANGEIGGNIFNIPTVGGYAYTANTGSSSMTATLEAG 347

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
              E+      +    +    +             +   +    +    I+        +
Sbjct: 348 KGSELPASDFIITYTSASTVEIQPVDNKGEPLGTASTANITAGVIDSSTITSGESFGLEI 407

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
                          L      +++        +   +     + +    N    V +  
Sbjct: 408 NVAGAANAGDQFQIKLNSESAANMSLATTRGEDLALAAPIRTANDINNIGNATITVGEVN 467

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
                    S   +    +  +    +  ++  D +  ++            +  +    
Sbjct: 468 DVTTGSFTTSPAGLTNGPISVVKTANLNEYTISDGVNTSTFTATLPAKDMLQQAGNGFEL 527

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
            G    I  +P+     +   + G           +       +                
Sbjct: 528 YGFDFDIEGSPETGDTFTLEFNQG---------GFDDNRNGQKLAGLQQGELVRQNVVSG 578

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
              + + T  +     +  +    + +       + +       Y +  GVNL EE + L
Sbjct: 579 TNSDNHKTFNQAYAGLVSDIGVVTNQAKTNGEAFEALAQQSEAWYESLSGVNLDEEAANL 638

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ +QSY  S +++     +  T+L   +
Sbjct: 639 LRFQQSYAASAQVLATARTVFDTILSAAR 667


>gi|124268248|ref|YP_001022252.1| flagellar hook-associated protein [Methylibium petroleiphilum PM1]
 gi|124261023|gb|ABM96017.1| flagellar hook-associated protein [Methylibium petroleiphilum PM1]
          Length = 653

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/444 (10%), Positives = 125/444 (28%), Gaps = 18/444 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + +              +I  NI NA+   Y R+      +             V+V
Sbjct: 1   MAGLMSLGTRAMFANYATLQTIGNNIANANTPGYSRQQVELGTAGGQSTGAGFFGQGVSV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T    +     +      S   +           E +       +   +    L ++  
Sbjct: 61  QTVTRASDAFLTRDAAMSKSQAARDAARLEQLERLEKVF--PTGESGLGYAAGDLLNAFV 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +    +    + V+  AEE+   F  +  ++  +++   ++++  ++ +      +  
Sbjct: 119 DVANRPQDASARQVVLARAEELASRFRAADSQLDALQSGVTEDVKNSVTVVNTLAKRVAD 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I     S H  +D LDQRD L+ +I   + ++TI  ++  + V+   G  L     
Sbjct: 179 INRQIAAAQGSGHAPNDLLDQRDQLISEIGSYVQVTTIEADDGSLGVFIGGGQRLVLGSN 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   ++Y        I   G         ++  GK+  LL  ++  +   +  + +
Sbjct: 239 AQQLKVVPDAYDAAKVRLAISEAG-GERLLPEDSLVAGKLPGLLAFQNQDLADARAMIGQ 297

Query: 293 MARVLIGSFSEKDPIAGN-----SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +A  + G+ + +  +  +         P   +        +   +        +      
Sbjct: 298 LASAIAGAVNRQQSLGLDLGQPAGSGAPMFALGAPAALPASTNARDAGGNFLSSVSLTVA 357

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                       +   +         L +    +       D               R  
Sbjct: 358 DPKQLQASDYELRTDASTPGQYFLTRLSDGVTRTVADGDTVDGFTLAIGTPAPGATDRFL 417

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNH 431
           +  + +       +      +   
Sbjct: 418 LQPVSQAAQGMARVLNNPNGIAAS 441



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/434 (9%), Positives = 106/434 (24%), Gaps = 5/434 (1%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V +   +        + L     A    ++  +           +    +     
Sbjct: 220 DGSLGVFIGGGQRLVLGSNAQQLKVVPDAYDAAKVRLAISEAGGERLLPEDSLVA-GKLP 278

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
             L    +  +       +   +       V    +   ++ +          L      
Sbjct: 279 GLLAFQNQDLA---DARAMIGQLASAIAGAVNRQQSLGLDLGQPAGSGAPMFALGAPAAL 335

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              +             +        L   D  L+  +   G   + R ++ +    +DG
Sbjct: 336 PASTNARDAGGNFLSSVSLTVADPKQLQASDYELRTDASTPGQYFLTRLSDGVTRTVADG 395

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
            T+              +     +       G+    N  + +             +   
Sbjct: 396 DTVDGFTLAIGTPAPGATDRFLLQPVSQAAQGMARVLNNPNGIAASSPVVATVASGNTGT 455

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                L   +  L  + +       +S N        G   + +      + +      +
Sbjct: 456 ATVGSLTVTSTALDPTQTANISFTDDSGNYNWELRDAGNAVVSSGTGTWTAGSTIALNGF 515

Query: 345 RSNPSFLRDGGSVSKKFLWN-VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
               + +   G   +           G    +    D+            ++   ++   
Sbjct: 516 ELTLAGVPRSGDAVQVAPTTFPAANNGNALSLLALRDAGIVGEQLLAGGVVSAGESITSA 575

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             +++  +      +      S  V  +   + +   GVNL EE + LI+ +Q+Y  + K
Sbjct: 576 YASAMADIGVRVQSARSSSNISTAVATNAEAARAGVSGVNLDEEAARLIQFQQAYQAAAK 635

Query: 464 LIMFTDKMLQTLLE 477
           ++     +  TLL 
Sbjct: 636 VLQVAQSVFDTLLS 649


>gi|148259129|ref|YP_001233256.1| flagellar hook-associated protein FlgK [Acidiphilium cryptum JF-5]
 gi|146400810|gb|ABQ29337.1| flagellar hook-associated protein FlgK [Acidiphilium cryptum JF-5]
          Length = 485

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/490 (14%), Positives = 155/490 (31%), Gaps = 15/490 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----- 55
           MS+      A +  +   QQ A + +NI NA+   Y       + +              
Sbjct: 1   MSVGTGLAIASSGLSAIDQQLAVVSQNIANANTSGYSVETANLSAATAGGQGSGVISAPA 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +        ++   +    Q ++ +  +  + +       N     ++ ++   ++  
Sbjct: 61  TRQVNTSIQTQVNNSIAQQSYQAVISTTLSGIDQVMGTPGQGNDLPSLLANVQSGFQTLM 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +   TV+  A+ +    N+ A  +Q     A   I  +I  L   L  +  +N 
Sbjct: 121 TDPSNVVQQNTVVSAAKTLTGQINSIASTLQSAGQSAASTITADIKKLNSTLGTIGSLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I           D  +QRD  +Q I+ + G   + + N  + ++T +G          I
Sbjct: 181 QIVNLAQQNKSTADLANQRDAAIQTIASLTGAKALTQTNGSIALFTVNGIQFPLNGSSPI 240

Query: 236 NFEK-----MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      S   T  +    + G     N      +  + +  Q   S        L
Sbjct: 241 TATTTTNNTSYSIGGTPVTFGGELGGAQQLINATLPQIQAGLDSFSQALSSRFAGAGLSL 300

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                  + + + K   A  + N   +     ++D +  +       I  NP        
Sbjct: 301 FTDPIGNVPTAATKGLSAVITVNPAVISNPALVRDGNVTVTNASGTPIPPNPAGGPAGYT 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 ++  F       +  P  I  Y D+     +         + +L   A N    
Sbjct: 361 ALIQNVLNSAFGTTTVGGSAQPPAITAYTDATGTVSLPYS-----GSGSLSAIATNFTAN 415

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S +         +   +    S+T GVN+ +++S L+ ++ +Y  + K +    +
Sbjct: 416 EASISSAALTQVSNVGNLVTALKAQASSTSGVNIDQQMSLLVTLQNAYAANAKTVTIAQQ 475

Query: 471 MLQTLLEGVK 480
           M Q +   V+
Sbjct: 476 MWQAVQAMVQ 485


>gi|229144365|ref|ZP_04272771.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24]
 gi|228639152|gb|EEK95576.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24]
          Length = 437

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NSGNVEYTRKGSFSVSKDNYVTNTSGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDEEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKNPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +     +G++  +     Y +  +      +     +
Sbjct: 280 TKGGT------------------VKIPFGKGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYIATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|326402283|ref|YP_004282364.1| flagellar hook-associated protein [Acidiphilium multivorum AIU301]
 gi|325049144|dbj|BAJ79482.1| flagellar hook-associated protein [Acidiphilium multivorum AIU301]
          Length = 485

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 158/490 (32%), Gaps = 15/490 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----- 55
           MS+      A +  +   QQ A + +NI NA+   Y       + +              
Sbjct: 1   MSVGTGLAIASSGLSAIDQQLAVVSQNIANANTSGYSVETANLSSATAGGQGSGVISAPA 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +        ++   +    Q ++ +  +  + +       N     ++ ++   ++  
Sbjct: 61  TRQVNTSIQTQVNNSIAQQSYQAVISTTLSGIDQVMGTPGQGNDLPSLLANVQSGFQTLM 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S  +   TV+  A+ +    N+ A  +Q     A   I  ++  L   LS +  +N 
Sbjct: 121 TDPSNVVQQNTVVSAAKTLTGQINSIASTLQSASQSAASTITEDLKKLNSTLSTIGSLNA 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I           D  +QRD  +Q I+ + G   + + N  + ++T +G  L       I
Sbjct: 181 QIVNLAQQNKSTADLANQRDAAIQTIASLTGAKALTQTNGSIALFTVNGIQLPLNGSSPI 240

Query: 236 NFEKMNSYTVTSESN-----PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                 + T  S           + G    +N      +  + +  Q   S        L
Sbjct: 241 TATTTTNSTSYSIGGTPVTFGGELGGAQQLNNATLPQIQAGLDSFSQALSSRFAGAGLSL 300

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                  + + + K   A  + N   +     ++D +  +       I  NP        
Sbjct: 301 FTDPIGNVPTAATKGLSAVITVNPAVISNPALVRDGNVTVTNASGTPIPPNPAGGPAGYT 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 ++  F       +  P  I  Y D+     +         + +L   A N    
Sbjct: 361 ALIQNVLNSAFGTTTVGGSAQPPAITAYTDATGTVSLPYS-----GSGSLSAIATNFTAN 415

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S +         +   +    S+T GVN+ +++S L+ ++ +Y  + K +    +
Sbjct: 416 EASISSAALTQVSNVGNLVTALKAQASSTSGVNIDQQMSLLVTLQNAYAANAKTVTIAQQ 475

Query: 471 MLQTLLEGVK 480
           M Q +   V+
Sbjct: 476 MWQAVQAMVQ 485


>gi|229090715|ref|ZP_04221948.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42]
 gi|228692657|gb|EEL46383.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42]
          Length = 437

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  V    +        S       +      ++     +        +          
Sbjct: 107 NGGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +               +  TL   + +    E ++ 
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V       +   V V ++  +      I+ +   +  +     N       V     +
Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVT 276

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +    G                +      G++  +     Y +  +      +     +
Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|218902868|ref|YP_002450702.1| putative flagellar hook protein FlgE [Bacillus cereus AH820]
 gi|218535884|gb|ACK88282.1| putative flagellar hook protein FlgE [Bacillus cereus AH820]
          Length = 437

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 128/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +               +  TL   + +    E ++ 
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V       +   V V ++  +      I+ +   +  +     N       V     +
Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNLGNLKQTDEPVQKDPVT 276

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +    G                +      G++  +     Y +  +      +     +
Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|30261751|ref|NP_844128.1| flagellar hook protein FlgE [Bacillus anthracis str. Ames]
 gi|47526975|ref|YP_018324.1| flagellar hook protein FlgE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184583|ref|YP_027835.1| flagellar hook protein FlgE [Bacillus anthracis str. Sterne]
 gi|65319023|ref|ZP_00391982.1| COG1749: Flagellar hook protein FlgE [Bacillus anthracis str.
           A2012]
 gi|165869249|ref|ZP_02213908.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0488]
 gi|167633465|ref|ZP_02391790.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0442]
 gi|167639152|ref|ZP_02397425.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0193]
 gi|170686150|ref|ZP_02877372.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0465]
 gi|170706520|ref|ZP_02896980.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0389]
 gi|177650602|ref|ZP_02933569.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0174]
 gi|190566422|ref|ZP_03019340.1| putative flagellar hook protein FlgE [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815486|ref|YP_002815495.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC
           684]
 gi|229600977|ref|YP_002866149.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0248]
 gi|254683244|ref|ZP_05147105.1| flagellar hook protein FlgE [Bacillus anthracis str. CNEVA-9066]
 gi|254723830|ref|ZP_05185616.1| flagellar hook protein FlgE [Bacillus anthracis str. A1055]
 gi|254734597|ref|ZP_05192309.1| flagellar hook protein FlgE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741006|ref|ZP_05198694.1| flagellar hook protein FlgE [Bacillus anthracis str. Kruger B]
 gi|254755249|ref|ZP_05207283.1| flagellar hook protein FlgE [Bacillus anthracis str. Vollum]
 gi|254759785|ref|ZP_05211809.1| flagellar hook protein FlgE [Bacillus anthracis str. Australia 94]
 gi|30255979|gb|AAP25614.1| putative flagellar hook protein FlgE [Bacillus anthracis str. Ames]
 gi|47502123|gb|AAT30799.1| putative flagellar hook protein FlgE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178510|gb|AAT53886.1| flagellar hook protein FlgE, putative [Bacillus anthracis str.
           Sterne]
 gi|164714689|gb|EDR20207.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0488]
 gi|167512942|gb|EDR88315.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0193]
 gi|167531503|gb|EDR94181.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0442]
 gi|170128618|gb|EDS97485.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0389]
 gi|170669847|gb|EDT20588.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0465]
 gi|172083746|gb|EDT68806.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0174]
 gi|190562557|gb|EDV16524.1| putative flagellar hook protein FlgE [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006608|gb|ACP16351.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC
           684]
 gi|229265385|gb|ACQ47022.1| putative flagellar hook protein FlgE [Bacillus anthracis str.
           A0248]
          Length = 437

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/478 (9%), Positives = 128/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGE- 278

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                  +      G++  +     Y +  +      +     +
Sbjct: 279 -----------------IIKGGSVQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|209547946|ref|YP_002279863.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533702|gb|ACI53637.1| protein of unknown function DUF1078 domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 433

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/481 (10%), Positives = 116/481 (24%), Gaps = 49/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +        + +             E    N +
Sbjct: 61  QSSVRQAVSDQGDISYTTSGTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +  D    I       +  L     +  A   
Sbjct: 121 GFQLMGYSYDSGSPAVVVNGFDGLVPVNVSQDGLTAIASTSGVFKGNLDSNAKIPVAPAT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++         ++  ++        +          V               ++   +
Sbjct: 181 APSANLGTTTTDTKKVSMVAYDRLGNKVMYDFYFTKASVAAAPPPAPPATAATWEVAMFR 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +  V   ++  +  G  V +   +    GK+ +   +                     
Sbjct: 241 NANAAVGGTTSFPYTAGGAVGNGTLTFDSNGKMTSSGAVN-------------------- 280

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                      D    Q I+       Q  ++ S        + 
Sbjct: 281 -------------------------ITDGVTGQTIAMDFSGLTQLGADFSGTGTPNGQAA 315

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 316 TPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 373 VTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 432

Query: 480 K 480
           +
Sbjct: 433 R 433


>gi|294013092|ref|YP_003546552.1| flagellar hook-associated protein 1 FlgK [Sphingobium japonicum
           UT26S]
 gi|292676422|dbj|BAI97940.1| flagellar hook-associated protein 1 FlgK [Sphingobium japonicum
           UT26S]
          Length = 446

 Score =  132 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 148/492 (30%), Gaps = 61/492 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +  +F    +         A++  NI NA  + Y RR   T  S                
Sbjct: 1   MSDLFIIGASGTKAYRTAMAAVSENIANASTEGYSRRSVTTVESGSSTATMAVYISRANF 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               V +         D  +   ++ +G       +  L +  +A +         ++ +
Sbjct: 61  GGTDVKSVNRATDPYLDATVRYTNTQLGSAVARMRW--LTDSETALNDTETGIGQLMTGM 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +++  + + ++  L  T +D+   V Q FN +A ++ ++ +    E +  ++ + + L
Sbjct: 119 FQNMDKLAASPNDKSLRVTTLDSIGRVAQAFNQTAADLAQVSSGIATEAQASVTTINQAL 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           S L  +N+++             LD RD  L  +S  + I      ++   V  +  T +
Sbjct: 179 SALADINNSLLRAQPGTSAYAQLLDSRDAALGTLSSNLNIDVSFGTHDQAQVTLNGQTLV 238

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                  +        T+   ++         S         G +  L       V   +
Sbjct: 239 QGDAATPLALTVNADGTLALGTSAGAALAAPTS---------GTLGGLFSAA-GTVSQRR 288

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             LD +A+  + + +                                            +
Sbjct: 289 ASLDTLAQQFVANLNAWHAQGLT----------------------------------DGS 314

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P                   ++    L     D      +      +  N ++ +     
Sbjct: 315 PGAAGAPLLSGASAATVTALISDPNQLAVKSSDGTANGNLLTVSTVLRGNGSVEQGWTAL 374

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           I       S +      +Q   +    +     GV+L  E + L++++Q+Y+   K++  
Sbjct: 375 IATHANLLSSTKAEQTTAQSRSDQAVAAREAVSGVDLDMEAADLLRIQQAYSGCAKILQV 434

Query: 468 TDKMLQTLLEGV 479
             + +  +L+ +
Sbjct: 435 AKETVDAILQII 446


>gi|197285510|ref|YP_002151382.1| flagellar hook protein FlgE [Proteus mirabilis HI4320]
 gi|227356001|ref|ZP_03840393.1| flagellar hook protein [Proteus mirabilis ATCC 29906]
 gi|194682997|emb|CAR43446.1| flagellar hook protein [Proteus mirabilis HI4320]
 gi|227163989|gb|EEI48891.1| flagellar hook protein [Proteus mirabilis ATCC 29906]
          Length = 406

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 119/476 (25%), Gaps = 75/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+    +I  NI N+    +                         ++N 
Sbjct: 2   SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGATVSFADVFAGSGAGLGVKVSGISQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +   +           F  +++                 +       Y  N+    
Sbjct: 62  KDGSITTTNRPTDVAISGGGFFRIED------SNGGVFYSRNGEFGKDKNGYLTNMQGMR 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +    +               +    +      I +    +    ++   +   +     
Sbjct: 116 ITGYPVQ----------NVDGKNVVQKGATPTPIIIPTDMMNASATDKMDMTVNLNSAEE 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +        D +D      S  +     + N +++ ++         +V          +
Sbjct: 166 AIDQTTHKFDPKDNDSYNFSTNVTTYDSLGNEHNLNLFFVKTKDNEWSVYAQDTTTGEPA 225

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                                        +  L+   + V+     +L     V      
Sbjct: 226 QD---------------------------LGKLVYKDNGVLDETAPKLKNFTTVAYKGSQ 258

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D                                     Q  +  S  +   +  +   
Sbjct: 259 PMD---------------------------MEMNFSGSTQQKVAESSVSKLAQNGYQAGE 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +  ++      +A       L     N   W E N S S  + 
Sbjct: 292 FTNFRIEPDGSIMATYSNQQSQVVGQIALANFANPGGLSSQGDNM--WSETNGSGSPIVG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +    VF  ++ +      V++ +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 350 VAGSGVFGKLTNNALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLVSM 405


>gi|77359728|ref|YP_339303.1| flagellar hook-associated [Pseudoalteromonas haloplanktis TAC125]
 gi|76874639|emb|CAI85860.1| putative flagellar hook-associated [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 670

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 137/443 (30%), Gaps = 8/443 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSEN 59
           MS   + N A +     +    +  +NI N +   YVR  T         V         
Sbjct: 1   MS-FNLLNIANSGIRANTDLLQTTSKNIANVNTDGYVRERTEHGTMIDNQVGKGNTYRLL 59

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                K L+  +S         S     + + + +   NS +  I+ L ++++      S
Sbjct: 60  NEFAQKQLNRDTSNKTFFDQFVSEANRVDTLFSQEA--NSLSTGINSLFNNVQEALNQPS 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK- 178
             +    V+ NA+ ++   +  +  V   +   ++++E+        + ++  +N  I  
Sbjct: 118 STVARSLVMTNADSLISQMDRLSGIVLDQKNVVNEQLEIFSDEANTLIQKIGSLNQQIAG 177

Query: 179 -FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              T +   A    ++RD  ++ +SE+I I T+   N + +V+   G  +         F
Sbjct: 178 VNGTNNASAASGTYNERDKAIRDLSELIDIETLDGPNGEKLVFMGSGEAVVMQNGSFNLF 237

Query: 238 EKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                     +   + ++G   V     ++  KGKI  LL  RD ++   QNQ+ +M   
Sbjct: 238 SMRGDPDPNFKELRLDVNGGKAVPLEVDASKLKGKIGGLLAFRDDILVPAQNQIGQMGLA 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L  +F++++ +  ++    G  I +                           S L     
Sbjct: 298 LADAFNQQNHLGMDANGKLGGDIFNIPTAKGFAYQANTGGAGVSATVEPGKGSNLPASDF 357

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-GWLEKNR 415
           +        +      D       +               N  +  +        +    
Sbjct: 358 IVTYTANPNEVSIQPVDNKGEPLGAATTATFVGGEINSANNPGVDLFGLQLTMAGVGNEG 417

Query: 416 SDSHDLHMKSQVVFNHISESYSN 438
                           ++     
Sbjct: 418 DKFQIKLNSEAAANITLATGRGE 440



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 61/255 (23%), Gaps = 9/255 (3%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L      +I         +   S     D +  + +   +              +  P  
Sbjct: 424 LNSEAAANITLATGRGEDLALASPIRTADDINNTGSGAISAGSVSSVTAGGFTTTTPPAL 483

Query: 287 QN-QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            N  +  +       +   D    N          + +  L         +         
Sbjct: 484 ANGDITIVKAAGTNDYLISDGNGANVPITIAPPGKNVLAGLGAPYDGYGFDFDIEGSPAT 543

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            +   L               +       +    +           +  + + T  +   
Sbjct: 544 GDSFTLEFNKG--------GFDDNRNGLKLAELQNGDLVRQNVVSSSDADNHKTFNQAYA 595

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  +      +         +       Y +  GVNL EE + L++ +QSY  S +++
Sbjct: 596 GLVTDIGVVTGQAKTNGAAFDALAQQSEAWYESLSGVNLDEEAANLLRFQQSYAASAQVL 655

Query: 466 MFTDKMLQTLLEGVK 480
                +  TLL   +
Sbjct: 656 SAARSIFDTLLSATR 670


>gi|330830303|ref|YP_004393255.1| flagellar hook protein FlgE [Aeromonas veronii B565]
 gi|328805439|gb|AEB50638.1| Flagellar hook protein FlgE [Aeromonas veronii B565]
          Length = 450

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/483 (11%), Positives = 116/483 (24%), Gaps = 45/483 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +       NI N +   +            N             V  
Sbjct: 2   SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L   ++A+        F    + ++  D             + +  SY 
Sbjct: 62  GAVAQQFHQGALQFTNNALDLAIQGNGFFVTSDGLTNLDRT----YTRAGAFKLNENSYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L    I+           + + +Q         I        +        N 
Sbjct: 118 VNNQGHYLQGYEINTDGTPKAVSINATKPIQ---------IPDRAGEPIKTSKIEASFNL 168

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                T          D +D      S  + I   +   +          T+ +   RD 
Sbjct: 169 PSTSTTKPHLFNPSNFDPKDSKTYSSSTSVVIYDSLGEPH----------TITKYFVRDA 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +                   G               +          +     +  ++  
Sbjct: 219 DTTDPTKPADPPSWRMYLYQGDKPIDI---------VGGAQPTMAPTLSQA-PRAAQITF 268

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G  +   P+   ++ +       GI        Q +        QY S     +   
Sbjct: 269 GSDGKMNAVTPLTLKTQPLGPGVGNAGIITNGADPTQQVDIVFGTVTQYASPFEVSKLTQ 328

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             S         +     +   Y ++         +A    +  L +       W +   
Sbjct: 329 DGSTVGRLTKVEITPDGIVSATYSNATTIKVAMVAMAKFANSQGLTQVGD--TSWRQSLL 386

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +     + QT+
Sbjct: 387 SGDALPGTPNSGTFGTIKSSALEQSNVDLTSELVDLITAQRNFQANSRSLEVNSSLQQTI 446

Query: 476 LEG 478
           L+ 
Sbjct: 447 LQI 449


>gi|228933037|ref|ZP_04095900.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826638|gb|EEM72409.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  V    +        S       +      ++     +        +          
Sbjct: 107 NGGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +      G++  +     Y +  +      +     +
Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|84624094|ref|YP_451466.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368034|dbj|BAE69192.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 624

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 131/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDGLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   +++++ A D LDQRD L+ ++    G + ++++   + V+T+ G  L       
Sbjct: 180 GTI--GSSAQNAAPDMLDQRDALVSELVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGT 399



 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/446 (8%), Positives = 119/446 (26%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQNAAPDMLDQRDALVSELVGYTGGTAVMQDGGFINVFTAGGQALVVATTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T      + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSANSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S       +   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++      +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKLCQGI 334
             ++    +       +      ++      +    +   P L     ++ +D       
Sbjct: 419 SVAITDPSRIAAATPVKATATVANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                     ++  +              +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      ++      +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D M Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTMFQAILGAVR 624


>gi|28275264|ref|NP_783519.1| flagellar hook-associated protein [Shewanella oneidensis MR-1]
          Length = 386

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 108/352 (30%), Gaps = 17/352 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    T                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTVGYHRQVATQTTLDSQRLGSSFYGTGTYVSD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQIFSQ--IGKVVPQSLTDLFAGLNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + +++A+++  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLNQTNDQITGMTKRINEISTELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I   N    +       L       
Sbjct: 182 LELMKSP---NQDPILLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGSIMLVSGEVAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                              I    V ++   +   G++ AL + RD  +     +LD++A
Sbjct: 239 SMSTATGDPFPNELQLMSSIGSQSVKADP--SKLGGQLGALFEYRDQTLVPASLELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             +  SF++      +     G  +   I D    L +    T         
Sbjct: 297 LGVADSFNKLQAQGFDLNGQVGANMFKDINDPLMSLGRVGGFTDNTGNATLG 348


>gi|183179571|ref|ZP_02957782.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-3]
 gi|183012982|gb|EDT88282.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-3]
          Length = 624

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 122/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLKVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|153834473|ref|ZP_01987140.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01]
 gi|148869169|gb|EDL68201.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01]
          Length = 637

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/395 (14%), Positives = 130/395 (32%), Gaps = 26/395 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++     +L                 +      +++  D++++
Sbjct: 63  NVRRSWDEFAVKELNLSTTNYAN-KLDNEKNLDLLSSMLSSVASKKIPENMNEWFDAVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K V++ A+ +    N     V++     +K +++ I  + +   E+  V
Sbjct: 122 MADTPNDMGARKVVLEKAKLLSDTLNEFHETVRQQSDVTNKSLDMGIERVNQLAVEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L++++SE   ++   R N++   V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIKELSEYTKVTVTPRKNSEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    S  V      +   G + +         GKI ALL++RD  +P   ++L  
Sbjct: 239 ASQLKMIDGSPDVHQRRLAMVEGGGIKAIKSDDI--DGKIGALLKMRDEHIPQVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---------LDNKLCQGISETICVNPQ 343
           +A       +       +     G  +   +              +    ++  +     
Sbjct: 297 LATAFSSEVNHLQSQGLDHYGNVGDPLFTDVNSERLAKSRVVAGPQSTADMAVYVNDISA 356

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            +     LR  G        N + +    D  N +
Sbjct: 357 LKGGEYSLRYDGDSYAVTKPNGETVKLNTDAGNAF 391



 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +    + +A         +   +           +    L  G   + KF  N+    G 
Sbjct: 476 DTKGNVLMAPQPYPPTGPVSVSLPSNHPAYNNGGATVFELSAGALANDKFTANLVPSEGD 535

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              +    +                  T++    N    +    S +  L   +Q+    
Sbjct: 536 NGNLRKMQNIQTDKK------MNGNESTIMSLYFNLNTDVGLKTSTASRLADVAQLESEA 589

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             E  ++  GVNL EE + ++K +Q+Y  S++++   +    T+L+ 
Sbjct: 590 AQERVASISGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNTILQL 636


>gi|192292820|ref|YP_001993425.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           TIE-1]
 gi|192286569|gb|ACF02950.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           TIE-1]
          Length = 623

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/458 (15%), Positives = 154/458 (33%), Gaps = 22/458 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL      A           + +  N+ NA+   YVR+    +      +  +V VV  
Sbjct: 1   MSLGDALAIAMAGLRVNQATMSLVSSNVANAETPGYVRKTVNQSAVNAGETGTSVKVVGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +  +     L   +S      L   F    + +  D + + +  +  + L  +L++ +
Sbjct: 61  DRQLDDYILAQLRTETSGGAYASLRSDFLKQLQGLFGDPNSSGTLENSYNGLTTALQALA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         V++ A+ +  N N+++  +Q +RA  +  I   ++     + ++  +N 
Sbjct: 121 TSPDSTSARIAVLNAAQAISSNLNSTSNGIQTLRAGCETGIADAVTTANNLMQQIANINT 180

Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            I+                LDQRD  + ++S+++ I  +    N + V+T  G  L    
Sbjct: 181 HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIRVVTNGANQVTVFTGSGVQLVGME 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDS 281
              + F    + + T+  NP                  SS+  S++  GK+ A +++RD 
Sbjct: 241 AAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANGSSSDLTSSLKSGKLAAYVELRDK 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +   Q QLD+ A  L  + S+K        +      +  +  +       IS T  + 
Sbjct: 301 TLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAGFSLDLSSMKTGNTVNISYTDTLT 360

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               +  + +R           N         +   +             A  + N+   
Sbjct: 361 GAQHT-VTVVRVDDPSVLPLPQNATADPNDYAVGIDFSGLSGSVVSQLNAALNSRNLQFS 419

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
             A N    +  N   S             ++   ++ 
Sbjct: 420 GTAPNIT--VLNNAGFSTITAASVTSTETSLTGGTASV 455



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/470 (11%), Positives = 127/470 (27%), Gaps = 25/470 (5%)

Query: 23  SIVRN----IENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78
           +   N    I N +             +P   T     +              S +   R
Sbjct: 166 TTANNLMQQIANINT--------HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIR 217

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE---SYSKNLSEDILGKTVIDNAEEVV 135
           ++ +      + +                        +   N +  I     I       
Sbjct: 218 VVTNGANQVTVFTGSGVQLVGMEAAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANG 277

Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
            + + ++       A   +  +  +   +  L +      +      +   A     Q  
Sbjct: 278 SSSDLTSSLKSGKLAAYVELRDKTLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAG 337

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
             L   S   G +  +   + +       T +    P  +   +  +      +  I   
Sbjct: 338 FSLDLSSMKTGNTVNISYTDTLTGAQHTVTVVRVDDPSVLPLPQNATADPNDYAVGIDFS 397

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
           G+  S                 ++ S        L+      I + S        +    
Sbjct: 398 GLSGSVVSQLNAALNS----RNLQFSGTAPNITVLNNAGFSTITAASVTSTETSLTGGTA 453

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
            + + +           G    +    Q  S  + L    S    +  +    AG     
Sbjct: 454 SVPLFNDNGAAYTGAINGYGSQMTGYAQRISVNADLIKDNSRLVVYSTSPLTAAGDTTRP 513

Query: 376 NHYCDSFNKNFIFDPVAGINTN------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
           +      N +           +       TLL Y +  +     N + +  L     VV 
Sbjct: 514 DFLVKQLNTSKYLYSAKTGIGSDAAPYKGTLLSYLQQFVSQQGSNAAAAQQLSEGQNVVL 573

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           N + + +S + GVN+ EE++ L+ ++ +Y  + +++   ++M Q+L++ +
Sbjct: 574 NTLQQKFSTSSGVNMDEEMAHLLSLQNAYAANARVMSTINQMYQSLMQAI 623


>gi|326319097|ref|YP_004236769.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375933|gb|ADX48202.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 425

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 118/473 (24%), Gaps = 50/473 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+    I  N+ N+    +            N                
Sbjct: 2   SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIG------------- 48

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                S+      +     A+ +  +  +      +  ++   D   +  +        +
Sbjct: 49  -----SAGGTNAGIGVELSAVAQQFNQGNISVTGNSLDVAINGDGFFTLQQPDGSRAYTR 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +   Q    +  +V     D    I  + +                  +T +  
Sbjct: 104 AGNFKLDSNGQLVTNTKAQVMGYALD---PITGKRTASNAAPLSFPTSKPIPAKQTTAIT 160

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +   +        +    +    R+     +   D   + + V         N++ V
Sbjct: 161 AEFNLDARAPDAAGDATATPPVPATPRSTYGTSINVYDSQGVAKPVSLYFQKNGANTWDV 220

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             + +       VV++  G        K +     +    FQ  L               
Sbjct: 221 YDKLDDATATPPVVATPIGQIKFDNSGKIVSPTATAPETGFQMPLTVKPT---------- 270

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                              + +      ++  +    QY    +                
Sbjct: 271 -----------------PPNPNGLADYTVNIKLDGVSQYGKAFAVSNLSQDGYTAGELTG 313

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     ++  Y +   +      +A       L     N   W+E   S    L   +
Sbjct: 314 ISIENNGTVMTRYSNGVTRAEGQVALASFRNTQGLASVGSN--NWVETFESGQPVLGTPT 371

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +  F  +         V+L  EL  ++  +++Y  + + I   D+++ TL+  
Sbjct: 372 EGKFGGLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 424


>gi|58582202|ref|YP_201218.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188576762|ref|YP_001913691.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576954|ref|YP_001913883.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58426796|gb|AAW75833.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188521214|gb|ACD59159.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521406|gb|ACD59351.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 624

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 131/404 (32%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDGLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   +++++ A D LDQRD L+ K+    G + ++++   + V+T+ G  L       
Sbjct: 180 GTI--GSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   N +    +      +     + + V+ +    
Sbjct: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGT 399



 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/446 (8%), Positives = 119/446 (26%), Gaps = 13/446 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--------SFEALKEMMSADDHYNNS 99
                 + ++   +M D+     S  +G              +              ++ 
Sbjct: 179 NGTIGSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSSK 238

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T      + +    +       +  +      ++       +  ++  +A+  +     
Sbjct: 239 LTTVADPYQPTKLQVAMQTQGQNVSLSANSLGGQIGGLLEFRSSVLEPTQAELGRLAVGM 298

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMV 218
            S       +   +  A+     +        +  +     +S     +S +   N  + 
Sbjct: 299 ASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNVTLS 358

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              ++      +    +      +       N + +      ++    + +        +
Sbjct: 359 FDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGTPASGDKFLLQPTAGLAGSL 418

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKLCQGI 334
             ++    +       +      ++      +    +   P L     ++ +D       
Sbjct: 419 SVAITDPSRIAAATPVKATATLANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQYTID 478

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                     ++  +              +   +       +   ++     I D  A  
Sbjct: 479 GAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDAKALS 538

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              VTL          +      ++      +V+ +    S  +  GVNL EE + ++K+
Sbjct: 539 GGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKL 598

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +Q+Y  + ++I   D M Q +L  V+
Sbjct: 599 QQAYQAAAQMISTADTMFQAILGAVR 624


>gi|52143704|ref|YP_083124.1| flagellar hook protein FlgE [Bacillus cereus E33L]
 gi|228926789|ref|ZP_04089857.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121305|ref|ZP_04250536.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201]
 gi|51977173|gb|AAU18723.1| flagellar hook protein [Bacillus cereus E33L]
 gi|228662150|gb|EEL17759.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201]
 gi|228832902|gb|EEM78471.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 127/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +               +  TL   + +    E ++ 
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V       +   V V ++  +      I  +   +  +     N       V     +
Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIVGMPDDKPLIFDNLGNLKQTDEPVQKDPVT 276

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +    G                +      G++  +     Y +  +      +     +
Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|328545491|ref|YP_004305600.1| flagellar basal body FlaE [polymorphum gilvum SL003B-26A1]
 gi|326415232|gb|ADZ72295.1| Flagellar basal body FlaE [Polymorphum gilvum SL003B-26A1]
          Length = 424

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/481 (10%), Positives = 109/481 (22%), Gaps = 58/481 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  V     +  N  S +  ++  NI N+    Y R  +  +    +    T  S   
Sbjct: 1   MSLYGVMRTGVSGMNAQSSKLGTVADNIANSSTTGYKRAASEFSSMILSQGTGTYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
                   +   AI                        S             + Y  N +
Sbjct: 61  KAHTVYAISQQGAISYTTSGLDLAIDGNGFFVVADREGSTALTRAGSFVVDSKGYLVNTA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    I N   V             +         + +S  +               
Sbjct: 121 GYYLQGYPIGNGGTVA-----------PVANGLGGLENVNVSQSKLEAVPTDSALLWANV 169

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +   A   L   +      S    +       N + +              D     
Sbjct: 170 PEDAAIVAAADLPSANAATATYSAKTSLIVYDNLGNAVTLDIYYSKATETAADSDWEVTI 229

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N+          +    + +         G + A      +V     +  D     +  
Sbjct: 230 YNADDAAPGGGFPYGAPALATQTITFDRTTGNLAAASPTDITVAVPNGSTFDLDMSGM-- 287

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                                         ++ +      + + 
Sbjct: 288 ------------------------------------------TYLNADFTITEVDANGNA 305

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                    A    L   Y +   +     P+A + +   L   + N       N S   
Sbjct: 306 PSAVESVEFADDGTLFAVYANGDRRALYRIPLADVPSPDKLTPLSGNIYTV--SNNSGEV 363

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +    +     ++     +  V+L  EL+ +I+ ++ Y  ++K+      +L+ L+  V
Sbjct: 364 RVGFPGEGGLGSLTVGALESSNVDLASELTSMIESQRGYTANSKVFKAGSDLLEELVNLV 423

Query: 480 K 480
           +
Sbjct: 424 R 424


>gi|325916941|ref|ZP_08179185.1| flagellar hook-associated protein FlgK [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536844|gb|EGD08596.1| flagellar hook-associated protein FlgK [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 624

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 126/404 (31%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSAVDEVNRLTQQIAKIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+     D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTIGNSAANAAP--DMLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTSS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R SV+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSANS--LGGQIGGLLEFRSSVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F+       +     G    +                         +    ++ 
Sbjct: 296 VGMASTFNAGHAQGMDLYGAMGGNFFNVGSPTTAANPNNTGTAALTASFSNMSAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W   + +    +      +     + + V  +    
Sbjct: 356 TLSFDGTAWKATSASTGAAVPMTGTGTAADPLVLNGVRMVVGGA 399



 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/466 (10%), Positives = 120/466 (25%), Gaps = 31/466 (6%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ---------------RLLQSFEALKEMM 90
           S     V       + +        +SA                           +++  
Sbjct: 159 SGLTSAVDEVNRLTQQIAKINGTIGNSAANAAPDMLDQRDALVSKLVGYTGGTAVIQDGG 218

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
             +          +      L + +       L   +    + V  + N+   ++  +  
Sbjct: 219 FMNVFTAGGQALVVGTTSSKLTTVADPYQPTKLQVAMQTQGQNVSLSANSLGGQIGGLLE 278

Query: 151 DADKEIELEISNLRRFLSELTVVNDA-----IKFKTASKHDAHDFLDQRDVLLQKISEII 205
                +E   + L R    +    +A     +    A   +  +            +   
Sbjct: 279 FRSSVLEPTQAELGRLAVGMASTFNAGHAQGMDLYGAMGGNFFNVGSPTTAANPNNTGTA 338

Query: 206 GISTIVRNN---NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            ++    N    +   V  S   T ++            + T T+    +     +V   
Sbjct: 339 ALTASFSNMSAVDGQNVTLSFDGTAWKATSASTGAAVPMTGTGTAADPLVLNGVRMVVGG 398

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
             ++  K  ++    +  ++     +     A   + + +    +     +   +  A  
Sbjct: 399 APASGDKFLLQPTAGLAGTLSVAITDPSRIAAATPVKATATIANLGTGKISDVKVTNAQN 458

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRD--------GGSVSKKFLWNVKNLAGYPDL 374
              L     + I                                     +   +      
Sbjct: 459 PALLTPSSVEFIDANQYTIDGTGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPMGAG 518

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
            +   ++     I D  A  +  VTL          +      +       +V+ +    
Sbjct: 519 SSDNGNAKLLAKIDDAKALNSGTVTLNGALSGLTTSVGSAARAADYAADAQKVINDQAQA 578

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           S  +  GVNL EE + ++K++Q+Y  + ++I   D + Q +L  V+
Sbjct: 579 SRDSISGVNLDEEAANMLKLQQAYQAAAQMISTADTIFQAILGAVR 624


>gi|294508671|ref|YP_003572730.1| flagellar hook associated protein 1 [Salinibacter ruber M8]
 gi|294345000|emb|CBH25778.1| flagellar hook associated protein 1 [Salinibacter ruber M8]
          Length = 465

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/497 (12%), Positives = 157/497 (31%), Gaps = 49/497 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----------------RRDTMT 43
           MS+ ++F+          ++  +  +NI NA+++ Y                    +   
Sbjct: 1   MSVNSLFDIGSTSLRAVGEKIDATSQNIANAESEGYRRRRVSLSSRSVAATGLYASNGAQ 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
            ++   V V         M     +   S     R       + E   A    +   +  
Sbjct: 61  DVTSSGVGVEQFERVRDGMLVSARNDAQSGESDAREEGRVLGVLEGALA-TDTDAGLSAS 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +  L D   + + N     + ++V+  A ++   F    + + ++  + +  +   +   
Sbjct: 120 LQGLADGFSNLANNPESQGVRESVLGRARQLTDTFGRLDQRLGELTTNTENALASNVEKA 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L ++  +N+ I+   A     +   DQRD  ++++S+++ +      ++   + T D
Sbjct: 180 NGLLDKVASLNEQIESARAGGSPDYAAEDQRDQTVKELSKLLPVDAQENRSDGYTL-TVD 238

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G T+ +         +  +    + +      GV       S    G+I A  ++ +  +
Sbjct: 239 GMTVVQGDDATALSLENENDPSKAPTVEFGDTGVAFEPGDES---GGEIGAQTRLLNDTL 295

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P  Q +LD +A  ++   + +     +     G                           
Sbjct: 296 PGVQGKLDALADEVLQKVNGEHTAGYDQNGGTGENFF----------------------- 332

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                      G+ +     NV        +      +             +    L   
Sbjct: 333 ----VDKSGTTGNTAGNIELNVDGPEDIAAVAGDGSGNPLPGDTGPAQNIADVASDLTTG 388

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
           A +    +     ++         V   +     +  GV++ ++LS LI+ +Q +  S +
Sbjct: 389 ATDLAAGVGTQVQEAAAKEEAQAAVGERVQAQIEDVSGVSVDQQLSSLIEQQQQFAASAQ 448

Query: 464 LIMFTDKMLQTLLEGVK 480
           ++    ++  TLL   +
Sbjct: 449 VLTTAREVSSTLLSIAR 465


>gi|225375213|ref|ZP_03752434.1| hypothetical protein ROSEINA2194_00838 [Roseburia inulinivorans DSM
           16841]
 gi|225212880|gb|EEG95234.1| hypothetical protein ROSEINA2194_00838 [Roseburia inulinivorans DSM
           16841]
          Length = 610

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 142/476 (29%), Gaps = 42/476 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49
           S       A +  +       +   NI N   K Y R+    +                 
Sbjct: 3   SQFFGLTIASSGLSAYQAALNTTANNISNEQTKGYSRQAANLSASDALRVNAKYGSMGSG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VTV + +      +D     + +++G      S+    E    DD      +  ++K+ +
Sbjct: 63  VTVNSIKQIRSEYYDTKYWQNQASLGLYETKLSYLEQIENYFIDDDTEKGFSTILNKMFN 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           SL++   N  +  + +  I +A+     FN+ A  + +I+   ++EI+  + N+     +
Sbjct: 123 SLDTLKNNAGDVNVRQQFISDAQSFTTYFNSVATGLGEIQDSVNEEIKSTVENINAIGKK 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS------- 222
           ++++N  I         A++  DQR +L+ ++S I+          +             
Sbjct: 183 ISLLNKQINVIEVQGGYANELRDQRALLIDELSSIVPTEVSEVPVTNSKHSDMQTGANYY 242

Query: 223 ----DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN----QGSAVPKGKIKA 274
               +G    +T             T+         + V   +      GS    G +KA
Sbjct: 243 TVKINGQKFVDTYEYSELTCVARKNTINQSDREGMYEIVWADTGNSFKAGSDSSSGSLKA 302

Query: 275 LLQIRDSVVPI---------FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           L  IRD                  +      +    +   P  G        +       
Sbjct: 303 LFDIRDGNNSENFRGAITGVTAGTIRISNPSITNVNAMTMPAEGVLTIDGKNYNYTDFTF 362

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL----AGYPDLINHYCDS 381
             +        T  +  Q  S+     DG   S     +   +    A   + + ++  S
Sbjct: 363 TTDADGNVKEYTFTLENQLSSDQQAKLDGKQASIGESIDAMGIPYYLAQMNEFLRNFAIS 422

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
           FN+    D    +N   T   Y     G   K   + H             +  Y 
Sbjct: 423 FNEIMNGDNAQDLNGKQT--NYFSFFTGTHTKTGEEYHFNKAAGTYQAKTSNSYYQ 476



 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/340 (10%), Positives = 83/340 (24%), Gaps = 16/340 (4%)

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             I          +      N       +S        D RD    +             
Sbjct: 267 NTINQSDREGMYEIVWADTGNSFKAGSDSSSGSLKALFDIRDGNNSENFRGAITGVTAGT 326

Query: 214 NNDMVVYTSDGT--------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
                   ++           L          +   +                  S+   
Sbjct: 327 IRISNPSITNVNAMTMPAEGVLTIDGKNYNYTDFTFTTDADGNVKEYTFTLENQLSSDQQ 386

Query: 266 AVPKGKIKALLQIRDSV-----VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           A   GK  ++ +  D++     +      L   A       +  +    N +        
Sbjct: 387 AKLDGKQASIGESIDAMGIPYYLAQMNEFLRNFAISFNEIMNGDNAQDLNGKQTNYFSFF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
            G      +             +  ++   L  G                  + I +  D
Sbjct: 447 TGTHTKTGEEYHFNKAAGTYQAKTSNSYYQLTCGNVCVSNIAVKDPTTIATTEKITNGAD 506

Query: 381 SFN---KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
           +++   K  +      +       ++ +  I  +  +   +         + N I +   
Sbjct: 507 AYDLVEKMLLLKSDTEMYRGGGADDFLQCMISDISVDTQKATIFQKNYSNISNAIDKQRM 566

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  GV+  EE   L+K + +YN+S+K++    ++   L+ 
Sbjct: 567 SVSGVDKDEEAIDLVKFQNAYNLSSKMVSVLAEIYDKLIN 606


>gi|296133040|ref|YP_003640287.1| fagellar hook-basal body protein [Thermincola sp. JR]
 gi|296031618|gb|ADG82386.1| fagellar hook-basal body protein [Thermincola potens JR]
          Length = 419

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/485 (10%), Positives = 112/485 (23%), Gaps = 73/485 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   I  NI N +   Y +                       +
Sbjct: 1   MMRSMFAGVSGLRNHQVRMDVIGNNIANVNTIGYKKARATFQD----------------I 44

Query: 63  FDKVLHAHSSAIG-------QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             + +   SS           Q  L       + +        +       +        
Sbjct: 45  LSQNIRGASSPTATRGGTNPMQVGLGMTINTIDTIHTQGSSETTGKVTDMMVDGDGFFIV 104

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +     +    + + V    NTS   VQ   AD+   I+  ++     + +   +  
Sbjct: 105 GDGTNRFYTRAGNFDFDAVGNLINTSGLLVQGWMADSQGNIDTTVAISGIKIPKGQSIQP 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                    ++      Q D                                        
Sbjct: 165 KATENATFVNNLDAGTPQYDN--------------------------------------- 185

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                    V +        G   +            +  + +                 
Sbjct: 186 -TVTPPVGVVATTLEIYDSLGNAYNLPIEFRKTANSNEWSVVVDPQGTFTAATLAVTTTS 244

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            LI   +                  D     +    Q I   +    QY    +   +  
Sbjct: 245 NLIFDGNGNYKAG--------DLTIDLTNFTNGANDQSIKVDLTKITQYAGESNVEPNFQ 296

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                 + N   +     +   + +   K      +A  N    L++   N       N 
Sbjct: 297 DGYASGVLNGYAIDSSGVITGQFSNGLTKQLAQVALANFNNPAGLMKVGGNLFTQ--SNN 354

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +          IS        V+L +E + +I  ++ +  ++++I  +D+MLQ L
Sbjct: 355 SGNAQIGAAGTGGRGEISPGKLEMSNVDLSQEFTDMIITQRGFQANSRIITVSDEMLQEL 414

Query: 476 LEGVK 480
           +   +
Sbjct: 415 VNLKR 419


>gi|196044997|ref|ZP_03112230.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108]
 gi|300117326|ref|ZP_07055116.1| flagellar hook protein FlgE [Bacillus cereus SJ1]
 gi|196023999|gb|EDX62673.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108]
 gi|298725161|gb|EFI65813.1| flagellar hook protein FlgE [Bacillus cereus SJ1]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +      G++  +     Y +  +      +     +
Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|196039080|ref|ZP_03106387.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99]
 gi|196030225|gb|EDX68825.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        S       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +      G++  +     Y +  +      +     +
Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|160896073|ref|YP_001561655.1| flagellar hook-associated protein FlgK [Delftia acidovorans SPH-1]
 gi|160361657|gb|ABX33270.1| flagellar hook-associated protein FlgK [Delftia acidovorans SPH-1]
          Length = 642

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 116/365 (31%), Gaps = 14/365 (3%)

Query: 15  NNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFD 64
                   +   NI N +   Y R+      S             V V T      ++ +
Sbjct: 1   MANQIALQTTGHNIANVNTAGYSRQSVAFQTSPGQNMGSGYIGNGVDVNTILRNFNDLLN 60

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
           +     S+         +  A  + +             I+ + +S    +   ++    
Sbjct: 61  RQAATASAVSAADSARATSLAQMQEVFG--GGKTGLGAAITDMMNSFGDVAGAPTDPSAR 118

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           + V+    E+   F +++ ++ ++   A +++  +++ +     ++  +N  I    AS 
Sbjct: 119 QVVLTRMNELAARFRSASAQLDELDYSAKQQMGNDVTVVNSLAGQVATLNAQISRSIASG 178

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
              +D LDQRD L++ I++ +  S I  ++  + ++      L           K  +  
Sbjct: 179 QTPNDLLDQRDQLVRNINKYVQTSQIPADDGSISLFVGGSQPLVLGPNSAQLTLKEATEF 238

Query: 245 VTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             S    ++    G        S +  G+I  LLQ + S +   +N L  MA  +  S +
Sbjct: 239 PGSGKMALYFQQPGGQNVELTPSMLGGGEIAGLLQFQGSDLTEGRNLLGRMALAIGDSLN 298

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E++ +        G  +       +                   + S L+          
Sbjct: 299 EQNNLGLTLSGQSGSNLFKLSMVSNGSTTGAQWTGATTPTTTVVDSSQLKASDYQIVFGS 358

Query: 363 WNVKN 367
                
Sbjct: 359 TAPAG 363



 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%)

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G+ S K          Y         + +           + + TL +    ++  +
Sbjct: 513 AINGTTSDKVTLGKATDPQYGTAYQRDAGNASSFLALRDSKLFDGSTTLSDGFSTAMAQV 572

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +      S+ +  ++    +   GVNL EE + L++ +QSY  S K++     +
Sbjct: 573 GTRTQSAQYAAKLSETIAKNLEADRTAVSGVNLDEEAAKLLQYQQSYQASAKMLQVAQSI 632

Query: 472 LQTLLEGV 479
             ++L+ V
Sbjct: 633 FDSVLQTV 640


>gi|120613059|ref|YP_972737.1| hypothetical protein Aave_4423 [Acidovorax citrulli AAC00-1]
 gi|120591523|gb|ABM34963.1| protein of unknown function DUF1078 domain protein [Acidovorax
           citrulli AAC00-1]
          Length = 425

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 119/473 (25%), Gaps = 50/473 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+    I  N+ N+    +            N                
Sbjct: 2   SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIG------------- 48

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                S+      +     A+ +  +  +      +  ++   D   +  +        +
Sbjct: 49  -----SAGGTNAGIGVELSAVAQQFNQGNISVTGNSLDVAINGDGFFTLQQPDGSHAYTR 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +   Q    +  +V     D    I  + +                  +T +  
Sbjct: 104 AGNFKLDSNGQLVTNTKAQVMGYALD---PITGKRTASNAAPLTFPTSKPIPAKQTTTIT 160

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +   +        +    +    R+     +   D   + + V         N++ V
Sbjct: 161 AEFNLDARAPDAAGDATATPPVPATPRSTYGTSINVYDSQGVAKPVSLYFQKNGANTWDV 220

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +    +  VV++  G        K +     +    FQ  L               
Sbjct: 221 YDRLDDATANPPVVATPIGQIKFDNSGKIVSPAATAPETGFQMPLTVKPT---------- 270

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                              + +      ++  +    QY    +                
Sbjct: 271 -----------------PPNPNGLADYTVNIKLDGVSQYGKAFAVSNLSQDGYTAGELTG 313

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     ++  Y +   +      +A       L     N   W+E  +S    L   +
Sbjct: 314 ISIENNGTVMTRYSNGVTRAEGQVALASFRNTQGLASVGNN--NWVETFQSGQPVLGTPT 371

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +  F  +         V+L  EL  ++  +++Y  + + I   D+++ TL+  
Sbjct: 372 EGKFGGLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 424


>gi|78485812|ref|YP_391737.1| hypothetical protein Tcr_1471 [Thiomicrospira crunogena XCL-2]
 gi|78364098|gb|ABB42063.1| Flagellar hook protein FlgE [Thiomicrospira crunogena XCL-2]
          Length = 538

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/537 (9%), Positives = 124/537 (23%), Gaps = 73/537 (13%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----VVTQRSENKNMF 63
            A +  N ASQ    I  N+ NA    Y       +             V   S  ++  
Sbjct: 8   TAVSGLNAASQGLGVISNNLANAQTMGYKSSRAEFSDMFYGAQSTPGNGVRVDSITQDFT 67

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           +  +      +        F  L++     +    +        +   + Y  +   + +
Sbjct: 68  NGTITDTGRDLDMAIDGDGFFILEDRTGKYE----NVYTRNGSFKLDKDGYVTSQEGNKV 123

Query: 124 GKTVIDNA----------------------------------EEVVQNFNTSAREVQKIR 149
              +++ A                                    V    N +    Q   
Sbjct: 124 QGYLLNPALSTERNPVFETTLSSIDLDELNKTPKSTDEMNYDINVDGEENNNVDATQTPI 183

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK--------- 200
           A  +  +  + +     LS +  +            D        D L  +         
Sbjct: 184 AGIENSVGGDTALAGSALSNIEKLVAPETEVYGGYPDFSTNKIVYDTLGGEHRLTTNFYK 243

Query: 201 ----ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI---- 252
                     ++     +         G T + +       E  +  T    ++      
Sbjct: 244 RDVVTEANSDLTYDPLTDTYTQGAAGTGNTKYTSWLAQYTMEDYDDATGQWVTSGHREAV 303

Query: 253 -FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
                    +     +       L+  R+  V       +        + +  DP     
Sbjct: 304 PADGTASADAGIIYELRFDTNGNLIDTREPTVAALATGANSTPTGQDTANNPLDPATWTP 363

Query: 312 ENVPGLFIADGIKDLDNKLCQ----------GISETICVNPQYRSNPSFLRDGGSVSKKF 361
                         +                 I        Q+  + +      +     
Sbjct: 364 TGNQPNMEWVVDSPITGANDPLGNPADALGVSIDVDFTKMTQFAGSYNLRGVTQNGYAIG 423

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                       +   Y +  +       +A  N    L +       + E   S +  +
Sbjct: 424 DLVGVYTGKDGVIEARYSNGRSVPVAQLGMANFNDKNALEKLGGQ--SYAESFASGAVQI 481

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +  +  I+        V+   EL  +I+ +++Y  S ++I  +  + QT+L+ 
Sbjct: 482 GTSERNGYGSINAGALEYSNVDTAGELVHMIQTQRTYQASAQVIQTSQTLTQTILQL 538


>gi|326791535|ref|YP_004309356.1| flagellar hook-basal body protein [Clostridium lentocellum DSM
           5427]
 gi|326542299|gb|ADZ84158.1| flagellar hook-basal body protein [Clostridium lentocellum DSM
           5427]
          Length = 432

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 122/478 (25%), Gaps = 46/478 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N +   Y  +                       
Sbjct: 1   MMRSMFSAVSGLRVHQTRMDVIGNNIANVNTIGYKSQRVTFNDV---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F + L + S+A  +            +       +   T   ++  D+      N    I
Sbjct: 45  FSQTLSSASAASDETGRGGRNPMQVGLGVNVSSIDMLMTQGAAQRTDNPFDLMINGEGFI 104

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                        I      +++   + L    ++  +V         
Sbjct: 105 VVGDTNGTYFTRAGALRADVDGNLIIANGM--KVKGWTAQLNEETNKYEIVKGEAGSINL 162

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +      +    LQ    +   ST    N        +  +L  T+    +     S
Sbjct: 163 ADPNFVSSKPKVTDKLQLSGNLNSTSTKEETNFRFYDSLGNYYSLATTLTPSTDKVDGYS 222

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  +    +G  ++                           +   ++     G  +
Sbjct: 223 VWEMKLGDIKDANGNKLNGTL----------------------SPDTAVKLYFDTNGKLA 260

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               + G + N   + +     D  +   + I+       QY S  +      + +    
Sbjct: 261 SVGAVPGATGNATSIDLEIENTDKTSTFAEKITIDFSSMTQYASASTIDPKTINGNAAGK 320

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                + G   +   Y +   +      VA  +    L +   N   +     S   D  
Sbjct: 321 MIGYEIGGDGVITASYDNGDMRILAQVVVAKFDNPEGLEKVGDNL--YKVTPNSGEFD-- 376

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                     +        V+L  E + +I  ++ +  ++++I  +D+MLQ L    +
Sbjct: 377 --GIGTVGTFNTGVLEMSNVDLSSEFTDMIVTQRGFQANSRIISVSDEMLQELTNLKR 432


>gi|260772280|ref|ZP_05881196.1| flagellar hook-associated protein FlgK [Vibrio metschnikovii CIP
           69.14]
 gi|260611419|gb|EEX36622.1| flagellar hook-associated protein FlgK [Vibrio metschnikovii CIP
           69.14]
          Length = 641

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 130/399 (32%), Gaps = 17/399 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNLGAQSVLTAQRQLNTTGHNIANVNTEGYSRQSVIQGTNAPRQLGGQTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++        +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNLATTNHAFNSDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++  + K V++ A  V QN N     V++     +K +++ I  + +   E+  +
Sbjct: 122 LADTPNDVGVRKVVLEKANLVTQNLNDFHETVRRQFDITNKGLDVGIERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++   G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDEHEKLVAELSQYTKVTVTPRTSAEGFNIHIGSGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     ++G  +  +       GK+ AL ++RD  +P   +++  
Sbjct: 239 ASQL-KMIDGYPDVKQRRLAVVEGNTLK-SISEKEIGGKMAALFEMRDQHIPGLLDEIGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           ++       +E      +     G  +   +    N   +  + +              +
Sbjct: 297 LSISFAHQVNELQSQGLDLRGNVGGLLFSDVNSEVNARSRIATASDSNADIRVYIDDLSQ 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
             G            +A  PD           N   D +
Sbjct: 357 LKGGEFALSYTGSHYVATLPDGKQQILALNQGNLYLDGL 395



 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/406 (11%), Positives = 107/406 (26%), Gaps = 6/406 (1%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                  LK +    D               S+           L +    +   ++   
Sbjct: 235 SGTEASQLKMIDGYPDVKQRRLAVVEGNTLKSISEKEIGGKMAALFEMRDQHIPGLLDEI 294

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
              +        +   +      N+   L          + + A+  D++  +      L
Sbjct: 295 GRLSISFAHQVNELQSQGLDLRGNVGGLLFSDVNSEVNARSRIATASDSNADIRVYIDDL 354

Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR---DINFEKMNSYTVTSESNPIFID 255
            ++       +   ++    +       L         D    ++N+     E   +   
Sbjct: 355 SQLKGGEFALSYTGSHYVATLPDGKQQILALNQGNLYLDGLRIQVNTPPEIGERVIVRPT 414

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK---DPIAGNSE 312
               +  Q +     KI A      +     + Q        I  F      +  AG+ E
Sbjct: 415 RDGAAQIQMATNDPTKIAAQSYQASTSFAQGRAQFQIDQVGDIKEFEAYLVPNTGAGDHE 474

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
               +   +G             ++           S      ++++  + N K  A   
Sbjct: 475 MQIRVVDKNGQLLATQPYLFNDDQSKLPIVIPAQQTSGQPTVFTLTRGAIENDKFTANLN 534

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
                  +      +       +   T++    N         S S  L   +++     
Sbjct: 535 PAEGDNGNLRKMIHLQTTKKMNDNESTIIGLYHNLNTDFGLKLSTSTRLADVARLEKEAA 594

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  GVNL EE + ++K + +Y  S++++   +    T+L+ 
Sbjct: 595 ESRIGSVSGVNLDEEAANMMKFQHAYMASSRIMQAANDTFNTILQL 640


>gi|323498414|ref|ZP_08103410.1| flagellar hook-associated protein FlgK [Vibrio sinaloensis DSM
           21326]
 gi|323316487|gb|EGA69502.1| flagellar hook-associated protein FlgK [Vibrio sinaloensis DSM
           21326]
          Length = 624

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/448 (13%), Positives = 151/448 (33%), Gaps = 22/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + +        A +Q  +   NI NA+ + Y R+  +   +             V V 
Sbjct: 3   SDLLSLGSQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGTNMPRQFGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++    +   ++   +   M +           +++  D+++S
Sbjct: 63  KVRRSWDQFAVNELNMSTTNYAHKLDDEANLEMLSNMLSSVSSKK-IPENLNEWFDAVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ +  + QN N     +++     +K+++L +  + +   E+  +
Sbjct: 122 LADSPNDVGARKVVLEKSTLITQNLNDFHETIRRQSDVTNKKLDLGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLVNELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  +  Y    E     I+G  + +   S    GK+ A+L +RD  +P   +QL +
Sbjct: 239 ASKL-TMIGGYPDVHERRLAMIEGKGIKA-ITSKDIDGKLGAMLTMRDEKIPQLMDQLGK 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       ++      +     G  I       D          +  +    ++ +   
Sbjct: 297 MAAAFSYDVNKLQSQGLDLRGNIGGLIF-----TDVNSDIIAQSRVVTSSDSTADLAVYI 351

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +  S      ++++   G   +     +      + D ++     + + E        L 
Sbjct: 352 EDTSQLVAGEYSLQYAGGDYYITRPNGEQSIVPVVDDAISLDGIRIDIREDLAAGERVLI 411

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +   +S           +HI+       
Sbjct: 412 RPTRNSAAQMQMETNDPSHIAAQSYEAS 439



 Score = 94.3 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 101/340 (29%), Gaps = 3/340 (0%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
             ++ ++     K       ++ +  S+   +   I     +  ++      R V     
Sbjct: 284 DEKIPQLMDQLGKMAAAFSYDVNKLQSQGLDLRGNIGGLIFTDVNSDIIAQSRVVTSSDS 343

Query: 202 SEIIGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
           +  + +    T      +  +  + G         + +   +    ++ +   I I   +
Sbjct: 344 TADLAVYIEDTSQLVAGEYSLQYAGGDYYITRPNGEQSIVPVVDDAISLDGIRIDIREDL 403

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
            +  +    P     A +Q+  +       Q  E +       ++             + 
Sbjct: 404 AAGERVLIRPTRNSAAQMQMETNDPSHIAAQSYEASTTFAQGSAKFSIDTAGELREFEVV 463

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
           ++   K       +G               +       ++   L N K  A         
Sbjct: 464 VSPDGKQFAVTDTKGRILMQPQTYPPSGPVTVGGTTFELTGGALPNDKFTANLVPSEGDN 523

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +      I       +   T+L+   N    +    S +  L   S++      E  ++
Sbjct: 524 GNLLKMQNIQTEKKLNDGESTVLDIYHNLNTDVGLQMSTASRLTDVSRLEKESAQERVAS 583

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 584 ISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 623


>gi|228914332|ref|ZP_04077947.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845326|gb|EEM90362.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 437

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  V    +        S       +      ++     +        +          
Sbjct: 107 NGGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +      G++  +     Y +  +      +     +
Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGVG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|297580837|ref|ZP_06942762.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC385]
 gi|297534663|gb|EFH73499.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC385]
          Length = 624

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 121/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQQRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQQRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|319427083|gb|ADV55157.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens
           200]
          Length = 641

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 127/439 (28%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFTGLNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + +++A+++  + N     +       + +I      +     EL  +N
Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I ++N    +       L       
Sbjct: 182 LELMKSP---NQDAILLDKQDALVQELSQYAQVNVIPQDNGVKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               K  +           I    VS++   +   G++ AL + RD  +    ++LD++A
Sbjct: 239 TMDTKTGNPFPNELQLMSSIGSQSVSADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    L +             SN +     
Sbjct: 297 LGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGY---------SNNTGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +N +        +        
Sbjct: 348 GVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSINIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S        +    N I+
Sbjct: 408 ASGDRFAIRPTAGAANGIT 426



 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 103/364 (28%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +       +   A  +  NFN   ++   +       I  +I++    L  +   ++ 
Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T   +     L          +              +   T +G+TL       IN
Sbjct: 342 TGNATLGVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIN 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I         +   ++   
Sbjct: 402 IKAGAMASGDRFAIRPTA-GAANGITVEMTDPKGIAAASPKI---TADAANSGNTQVKLT 457

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            I + S  +     SE    L         +     G S          S  +F      
Sbjct: 458 QITNRSAANFPITGSELTIQLDTTAIPPTYEAFDASGTSLGAAAPYTPPSISAFGFTFEV 517

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            S     N +             ++     + +         TL +   N+   +     
Sbjct: 518 DSTAAASNDRFTFNLAFAEGDNSNAVAMAKLSESKVMNEGKSTLADVFENTKIDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ ++        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 TSVR 641


>gi|268589982|ref|ZP_06124203.1| flagellar hook protein FlgE [Providencia rettgeri DSM 1131]
 gi|291314700|gb|EFE55153.1| flagellar hook protein FlgE [Providencia rettgeri DSM 1131]
          Length = 419

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 120/476 (25%), Gaps = 62/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS    SI  NI N+    +    T          V       +  +N 
Sbjct: 2   SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +     A         F  +++         ++      +          N    +
Sbjct: 62  KDGPITRTDRATDVAISGNGFFRVQDQ------NGDTYYSRDGQFLRDKSGNLVNNQGMV 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        E+           V          + +    +    SEL  +   +  +  
Sbjct: 116 VTGYPASVDEK---------GNVTIQSGGVPAGLNIPTDMMDAKASELAKLTINLNSEDK 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K    D  +  D      S  +       N +++ VY          V           
Sbjct: 167 IKDKPFDVNNPDDSATYNFSTTMTAYDSQGNTHEISVYFVKSADNEWKVYAK-------- 218

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                                                D V     N  D    V++ +  
Sbjct: 219 ----------------------------------DANDKVATQLINTEDVDDTVVVHNKL 244

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     S      F  +              +      Q  S  S      +      
Sbjct: 245 IFDGNGRLSAPTDATFDFNYKGLNGANDGVLRVDLNKTRQQKVSESSVSAIDVNGYPAGE 304

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     +  +Y +   +      ++       L+    N   W   N S +    
Sbjct: 305 YTTFKIEDNGLITANYSNQQKRVVGQVALSAFANPNGLVSQGGNV--WASSNTSGNPMDG 362

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++     +  V++ +EL  +I ++++Y  + + I   D+MLQTL+  
Sbjct: 363 VPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNL 418


>gi|229172400|ref|ZP_04299959.1| Flagellar hook protein FlgE [Bacillus cereus MM3]
 gi|228610871|gb|EEK68134.1| Flagellar hook protein FlgE [Bacillus cereus MM3]
          Length = 441

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 123/478 (25%), Gaps = 37/478 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    +      +    NI NA    Y ++  +      N TV +    + + 
Sbjct: 1   MIKALYTSITGMSATQNALSVTSNNIANAQTAGYKKQKAIFDDLLYNNTVGS--RGDGSY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F     +    +    +       L       +   +   
Sbjct: 59  AGTNPKSIGNGLKFSGTATDFSD-GSITLTGEKMETAIEGNGLFLVGDRNGGNVEYTRKG 117

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 DN              V+    + D   +     L    +    V D       
Sbjct: 118 SFGVSADNFITATGGQYVLGYGVKPGTQEVDFSSQPSAIKLPVGTAIGGSVTDKATLGGN 177

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +  D      +   + ++I     I +N     V   +  T          F   N 
Sbjct: 178 LSRNQSDLSTDFTIYDDEGNKITLRMDIKQNTKKETVGDKEIDT-PIQGEYTYTFSMRND 236

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                E  P+  +     +        GK++ L +                         
Sbjct: 237 SKNEKEFKPVLGENDAPITKNMKFDKAGKLERLDE------------------------- 271

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                     +     I  G         Q +   +     Y +  +      +     +
Sbjct: 272 ------DVQRDPNTKEITQGGTIKIPFANQNLELNLGGLTNYPTGKTITATDVAGRPAAI 325

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    S    + 
Sbjct: 326 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKSGNG--NYIATPSSGIPAIG 383

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++      +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 384 VAGENGAGNVRGGAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 441


>gi|197104253|ref|YP_002129630.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1]
 gi|196477673|gb|ACG77201.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1]
          Length = 452

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/482 (10%), Positives = 115/482 (23%), Gaps = 38/482 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVTQRSENK 60
                +     S   A+I  NI N +   Y R                  +    +S  +
Sbjct: 1   MLAGVSGLVANSSALAAISDNIANVNTVAYKRNQVNFANVVTAQAVKGKYSAGGVQSVTR 60

Query: 61  NMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
               +   + A +S          F  +          +              + Y  N 
Sbjct: 61  QFVSQQGLIQASNSTTDLAISGDGFFVVANKGLGLTGADPRSFTRSGAFAVDSDGYMVND 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +   L    +        N +  +     +    + +           L     VN    
Sbjct: 121 AGLYLQGWPVQADGTFNVNPSDLS-----LMQSINVKNLGSAVAPTTELGVTANVNKDGP 175

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +                   +   G+        ++V        +   + +D    
Sbjct: 176 VSASEATYDGSVAATSMAEYADSAGATGVKPDFVIEMNVVDSAGGSRKIALAMLKDDVAN 235

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             ++      ++ + +                     +      +      L  ++    
Sbjct: 236 AWHAEIYAVPASSVDLAAGTPPGQLARGTINFNADGTIN-----LGTTTAALQSLSLDAS 290

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              + +                           Q I+  +    QY S  +      + +
Sbjct: 291 AGATPRWATGLGLA------------------AQDINLALDKLSQYSSTSTVTAIQSNGA 332

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                   ++     +   Y +S  +      VA       L   + N   +     +  
Sbjct: 333 GVGNVIAIDVDPEGVVSAVYDNSQIRKIAKIGVATFPNPDALAAVSGN--AYRPTIPAGE 390

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +          IS S      V+L  E + LI  +++Y+ S+K+I   D+ML+ L+  
Sbjct: 391 MTVKEAGIGGAGKISPSSLEASTVDLSAEFTGLIATQKAYSASSKIITTADQMLEELINI 450

Query: 479 VK 480
            +
Sbjct: 451 KR 452


>gi|39936992|ref|NP_949268.1| flagellar hook-associated protein [Rhodopseudomonas palustris
           CGA009]
 gi|39650849|emb|CAE29372.1| possible flagellar hook-associated protein 1 FlgK [Rhodopseudomonas
           palustris CGA009]
          Length = 623

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/458 (15%), Positives = 152/458 (33%), Gaps = 22/458 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL      A           + +  N+ NA+   YVR+    +      +  +V VV  
Sbjct: 1   MSLGDALAIAMAGLRVNQATMSLVSSNVANAETPGYVRKTVNQSAVNAGETGTSVKVVGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +  +     L   +S      L   F    + +  D +   +  +  + L  +L++ +
Sbjct: 61  DRQLDDYILAQLRTETSGGAYASLRSDFLKQLQGLFGDPNSTGTLENSYNGLTTALQALA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +         V++ A+ +  N N+++  +Q +RA  +  I   ++     + ++  +N 
Sbjct: 121 TSPDSTSARIAVLNAAQAISSNLNSTSNGIQTLRAGCETGIADAVTTANNLMQQIANINT 180

Query: 176 AIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            I+                LDQRD  + ++S+++ I  +    N + V+T  G  L    
Sbjct: 181 HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIRVVTNGANQVTVFTGSGVQLVGME 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGV----------VVSSNQGSAVPKGKIKALLQIRDS 281
              + F    + + T+  NP                  SS+  S++  GK+ A +++RD 
Sbjct: 241 AAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANGSSSDLTSSLKSGKLAAYVELRDK 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +   Q QLD+ A  L  + S+K        +         +  +       IS T  + 
Sbjct: 301 TLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAGFNLDLSSMKTGNTVNISYTDTLT 360

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               +  + +R           N         +   +             A  + N+   
Sbjct: 361 GAQHT-VTVVRVDDPSVLPLPQNATADPNDYAVGIDFSGLSGSVVSQLNAALNSRNLQFS 419

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
             A N    +  N   S             ++   ++ 
Sbjct: 420 GTAPNIT--VLNNAGFSTITAASVTSTETSLTGGTASV 455



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/470 (11%), Positives = 127/470 (27%), Gaps = 25/470 (5%)

Query: 23  SIVRN----IENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78
           +   N    I N +             +P   T     +              S +   R
Sbjct: 166 TTANNLMQQIANINT--------HIQTNPLGGTSTDAATSAMLDQRDQAINQLSQLMDIR 217

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE---SYSKNLSEDILGKTVIDNAEEVV 135
           ++ +      + +                        +   N +  I     I       
Sbjct: 218 VVTNGANQVTVFTGSGVQLVGMEAAKLTFNAQGTVSPTTMWNPNTAISDLGSIRVGYANG 277

Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
            + + ++       A   +  +  +   +  L +      +      +   A     Q  
Sbjct: 278 SSSDLTSSLKSGKLAAYVELRDKTLVQAQTQLDQFAASLSSALSDKTTAGTAVTSGTQAG 337

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
             L   S   G +  +   + +       T +    P  +   +  +      +  I   
Sbjct: 338 FNLDLSSMKTGNTVNISYTDTLTGAQHTVTVVRVDDPSVLPLPQNATADPNDYAVGIDFS 397

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
           G+  S                 ++ S        L+      I + S        +    
Sbjct: 398 GLSGSVVSQLNAALNS----RNLQFSGTAPNITVLNNAGFSTITAASVTSTETSLTGGTA 453

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
            + + +           G    +    Q  S  + L    S    +  +    AG     
Sbjct: 454 SVPLFNDNGAAYTGAINGYGSQMTGYAQRISVNADLIKDNSRLVVYSTSPLTAAGDTTRP 513

Query: 376 NHYCDSFNKNFIFDPVAGINTN------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
           +      N +           +       TLL Y +  +     N + +  L     VV 
Sbjct: 514 DFLVKQLNTSKYLYSAKTGIGSDAAPYKGTLLSYLQQFVSQQGSNAAAAQQLSEGQNVVL 573

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           N + + +S + GVN+ EE++ L+ ++ +Y  + +++   ++M Q+L++ +
Sbjct: 574 NTLQQKFSTSSGVNMDEEMAHLLSLQNAYAANARVMSTINQMYQSLMQAI 623


>gi|332296509|ref|YP_004438432.1| flagellar hook-associated protein FlgK [Thermodesulfobium narugense
           DSM 14796]
 gi|332179612|gb|AEE15301.1| flagellar hook-associated protein FlgK [Thermodesulfobium narugense
           DSM 14796]
          Length = 936

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 142/448 (31%), Gaps = 18/448 (4%)

Query: 1   MSLLAVF---NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TIS 46
           MS ++ F     AQ+   +          N+ NA+  +Y R+  +               
Sbjct: 1   MSTISSFLGLQIAQSALASNQLAMDVTGHNVANANTASYSRQSPVFVQNTPLSYPTSGEV 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V + T +    +  D  L   SS         +     +   A +  N      +  
Sbjct: 61  GTGVNISTIKRYRDSFIDAQLRNASSLQSYYDTSSTLLQQVQTALA-EPSNIGLQTSLQN 119

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              + +S + N S+    + VI +++ ++ ++ +    +  +R      +    +N+   
Sbjct: 120 FFSAFQSLANNPSDLSTRQLVISDSQNLIFSYQSLYNGLIDLRNQLSSSLSTLATNVNTI 179

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
              +  +N  I    AS    +D LDQRD L+ ++++++ +S     + +++V     + 
Sbjct: 180 AQNIYTLNKQIAVVNASGQQPNDLLDQRDNLVDQLAKLVNVSYTTDQSGNLLVSIGGHSL 239

Query: 227 LFETVPRDINF--EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           +       +    +  N       ++      V  S    + V  G+I A L +RD  + 
Sbjct: 240 VSTAGYDSLTVIPDTSNPSDPNDPTSQPMSKLVWSSDGMNANVSGGQIGATLDMRDINLV 299

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + NQL+  A  L+ + +  +       +   +       +                   
Sbjct: 300 NYLNQLNSQATSLMSAVNYLNSQGYPLNSTYLVSDISPTLNFFTGNSITTMGIDSRIINN 359

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +        G      +           +     +  + +    PV  +++    L  A
Sbjct: 360 PA-LIGASSTGGSGDGEIAQAIANLQNEPIYGFPVNQTSVSGSVLPVQYLSSTGYNLSSA 418

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              +G       D  +     + +   +
Sbjct: 419 NIDVGSSGIYNLDFSNATTAQRTLTIQL 446



 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/430 (8%), Positives = 102/430 (23%), Gaps = 14/430 (3%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                  S N  + D      +S++       +   L      D   ++      +    
Sbjct: 518 ADAANYNSVNDLINDINTQIAASSLSGHVQAYNDGGLLGFKVIDSSTSSLSVSGDTSGLL 577

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
              S     +          +   +      + +    I+    K      S L+     
Sbjct: 578 GFSSVGVQNANSTPLIQAYQDGNLLAFKLVDNYQGSTPIQDANFKGSSFIASGLQALAFP 637

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTLF 228
             + +        +           +      +  I   +    N+      T+ G++  
Sbjct: 638 TAIGSALTFPLNIATTSNATLNFTLNNASSPTTISIPTGTYTNINSLVSAWNTALGSSSL 697

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +      +     ++   +            +    S       +A   + +  +     
Sbjct: 698 KGQVYAESINGNLAFYTPNLGISSLTVTGDGTQGFDSTGITNSAQADSNLYNFAMYGATA 757

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
              +     +      +     + +   L   +                    P Y    
Sbjct: 758 NGVDPRSRTLTVMLTNNLTGQVTTSNIYLPSGNYSNASAIASKLNSIYGSSGMPLYG--- 814

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                          + ++L       N       +          + + T+     +  
Sbjct: 815 ----------ITVGTDGESLTFVTSNPNQSIRVLGEYSSALGFKNYDGSFTVANAYISMT 864

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +      +   +     V   +     +  GV++ EE++ LI+ + +Y+ S ++I   
Sbjct: 865 SNIGTQGQQATTNYTNQSNVVTLLQNQQQSVQGVSMDEEMTNLIQYQTAYSASARVINAI 924

Query: 469 DKMLQTLLEG 478
           + ML  L+  
Sbjct: 925 NSMLDKLINS 934


>gi|160878464|ref|YP_001557432.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans
           ISDg]
 gi|160427130|gb|ABX40693.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans
           ISDg]
          Length = 613

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 107/306 (34%), Gaps = 25/306 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49
           S     +   +    +     +   NI N + + + R+                      
Sbjct: 3   STFFGLSIGNSGLYASQAGLNTTAHNIANIETEGFSRQVAKQQAGTALRVNSSYGMVGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V +        + +D     +++  G     + +    E    ++            + +
Sbjct: 63  VDIKGVTQIRDSYYDLKYMKNNTMYGAYSTKEYYLTSIENYF-NEVKLEGFLTNFDNMYN 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           SL+  SK   +  +   V + A+      N+ +  + +++ + + EI+ ++  +     +
Sbjct: 122 SLQELSKQPEDLTVRTQVTNMAQSTCDYVNSLSTSLSRLQEECNFEIKNQVERVNSLAQQ 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-----DG 224
           + +V   I     +   A+D  DQR +++ ++S    +S   R   D V  TS     DG
Sbjct: 182 IAIVTKQINTIEVNGGTANDLRDQRALMVDELSGFATVSVNERIVGDNVGVTSYTVKLDG 241

Query: 225 TTLFETVPRDINF-----EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            TL +    +         K+N    T   N  + +G  V  N  +    G +KAL+Q+R
Sbjct: 242 QTLVDNYEANQLKVVPRDTKVNQLDATGLFNVCWSNGQPVDLNSPTM--GGTLKALIQVR 299

Query: 280 DSVVPI 285
           D     
Sbjct: 300 DGNNKE 305



 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/446 (11%), Positives = 125/446 (28%), Gaps = 31/446 (6%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL---S 119
               +   +S   Q  ++       E+     +        +        + S N     
Sbjct: 168 IKNQVERVNSLAQQIAIVTKQINTIEVNGGTANDLRDQRALMVDELSGFATVSVNERIVG 227

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +++   +     +      N  A +++ +  D                S    V+     
Sbjct: 228 DNVGVTSYTVKLDGQTLVDNYEANQLKVVPRDTKVNQLDATGLFNVCWSNGQPVDLNSPT 287

Query: 180 KTASKHDAHDFLDQRDVLLQK-----ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
              +        D  +    +      +    I+    N N++         +     R+
Sbjct: 288 MGGTLKALIQVRDGNNKEGYQGKAIASAGDTTITVTSTNKNNVEDLNIASNGIITIGNRE 347

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            ++              I+   +              I    Q+    +P +  QL++ A
Sbjct: 348 YHYNGFAVTKDEDTGEFIYEFSLDEPVKVDVNEETAHIG--KQVDYKGIPYYMAQLNKFA 405

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS------------------- 335
           R    +F++      +     GL   +G+  +  K                         
Sbjct: 406 RTYAKAFNDVHKSGQDLNGDQGLDFFNGVDVVTGKNFIFDKSPSDEGNGYLFTSKTGAYA 465

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAG 393
                 P + S      D   V+K    + K LA    + N   ++ N            
Sbjct: 466 GDYADEPNFASYYLLTADTFGVTKAVYSDPKKLATASSIENGVANADNVQKLLALKDDVR 525

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +       ++ +  +  +  +   + +       + + +     +  GV+ +EE   L++
Sbjct: 526 MFGQGKPAQFFQTLVAEIGIDAKQASNFAENQMNILSAVQNQRLSISGVDQEEEAMNLVR 585

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++YN+S K+I   D++   L+  +
Sbjct: 586 YQKAYNLSAKVISIMDQIYDRLINYM 611


>gi|182418344|ref|ZP_02949639.1| flagellar hook-associated protein FlgK [Clostridium butyricum 5521]
 gi|237666652|ref|ZP_04526637.1| flagellar hook-associated protein FlgK [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377726|gb|EDT75270.1| flagellar hook-associated protein FlgK [Clostridium butyricum 5521]
 gi|237657851|gb|EEP55406.1| flagellar hook-associated protein FlgK [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 610

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 128/412 (31%), Gaps = 26/412 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L   F  A+   +       +   N+ N+    Y R+  +   +               
Sbjct: 3   GLFDTFTVAKRGLSVQQGNINTTSHNLANSQTAGYSRQRAVVETTRPFGGLSKFDGVSYG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  + T +       D  +   ++  G       +    E +  ++  +      +
Sbjct: 63  QIGTGAQITTIQRIRNEFIDYQVRTENTNTGTLGSKYQYLYQVEDIL-NETTSTGIQGAL 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S+  D+ +  SK   ++      +  AE +    N+   +++  + DA KE+   ++ + 
Sbjct: 122 SEFYDAFQELSKAPEKESNRTVALKKAEALATALNSRYNQLESKKEDAQKELGNYVTEVN 181

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  +N  I   ++   + +D LD RD L+ ++S   G+       N + +     
Sbjct: 182 DILDKINELNKQISRVSSVGMNPNDLLDSRDYLIDQLSSKFGVKIDKDKYNTIDLS---- 237

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             + E V +++     ++   ++ S   F++   ++      V    +      R+ ++ 
Sbjct: 238 --VTENVNKNLGNLVNSNPNDSNYSRFSFVENAELNGAGDLVVTYSVLGDKSNQRELIIT 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-- 342
             + +L+ + + L+          GN                         + + +    
Sbjct: 296 GDKAKLENIKKSLLEDRVLVANSEGNLGTRDATGKFIEYDSGKTINSDEFEKNVAIFNKE 355

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
               +   +     V       +  L  +     +  ++          + I
Sbjct: 356 DCGISKGEIAGNQEVQDTIQGYMDELDKFAASFAYAVNAIQTGSTKSGESNI 407



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/409 (11%), Positives = 106/409 (25%), Gaps = 2/409 (0%)

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
           +                         +        + +++     NL       +     
Sbjct: 203 NPNDLLDSRDYLIDQLSSKFGVKIDKDKYNTIDLSVTENVNKNLGNLVNSNPNDSNYSRF 262

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
             V       A ++    +    +       +    ++L  +  ++        ++   L
Sbjct: 263 SFVENAELNGAGDLVVTYSVLGDKSNQRELIITGDKAKLENIKKSLLEDRVLVANSEGNL 322

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
             RD   + I    G +         V   +             N E  ++     +   
Sbjct: 323 GTRDATGKFIEYDSGKTINSDEFEKNVAIFNKEDCGISKGEIAGNQEVQDTIQGYMDELD 382

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
            F      + N               I D+        L  +      S         + 
Sbjct: 383 KFAASFAYAVNAIQTGSTKS--GESNILDAKGNKINAALLFVNSDHTTSDKGITAKNISI 440

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
            +     ++       +       +            +   + G +S   + +     G 
Sbjct: 441 NSAIEKDLSLLNCGEHHVDDYSGEKDGSRVLAIAQLKNLKINIGGLSIDDIESRDTFFGV 500

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
               N     F      +      T   L +Y  ++I  L  N S +         +  +
Sbjct: 501 GAAKNPSSIDFEAGSTINLANKDGTGSKLSDYYASTISKLASNVSKAKSDLSTQNTLLAN 560

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +     +  GV+L EE++ LI+ + SY  + K+I   D++L  ++ G+K
Sbjct: 561 LENQRLSESGVSLDEEMADLIQFQHSYQANAKMINTVDELLDVVINGLK 609


>gi|306817677|ref|ZP_07451419.1| possible flagellar hook-associated protein FlgK [Mobiluncus
           mulieris ATCC 35239]
 gi|304649491|gb|EFM46774.1| possible flagellar hook-associated protein FlgK [Mobiluncus
           mulieris ATCC 35239]
          Length = 916

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 16/241 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +  +R       D  L   +      + + S     E  S D+    S ++ + +
Sbjct: 63  GGGVEITGERRLGDFFLDAKLRMETGRAASTKEITSGWKNVES-SMDELGKKSLSNAMRE 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + +        T I NA  +V    T    +  +  +   E++  +++L   
Sbjct: 122 FYKSWGDVNNSSDNLGARATAIGNARALVDQIKTGYTHINDLWKNGRAELDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +  +  +N+ I+  TA   + +  +D+RD L   ISE+ G +     +        + + 
Sbjct: 182 MDSVLALNERIRKGTAMHANVNHLIDERDKLALHISELTGATVRKGYSVYTAENAPNASM 241

Query: 227 L 227
           +
Sbjct: 242 V 242



 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
               + +       +           +       +   TL E+ ++ +  +  + S + D
Sbjct: 798 LGVAIDDPMKIAAGVYKNGVYDGSVALRIGNQQDSATSTLNEWGKSVV-DVGVHASGARD 856

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  ++       +   +   V++ EE+  LI+ + +Y  + ++    + ML+TL+   +
Sbjct: 857 SYNLAEQTRRIADQQQKSQSSVDMNEEVMNLIRGQHAYAGAARITSTVNSMLETLINLGR 916


>gi|317152826|ref|YP_004120874.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943077|gb|ADU62128.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 515

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/522 (9%), Positives = 115/522 (22%), Gaps = 49/522 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPEN 49
           MS+        +     SQ  + +  N+ N+    Y                      + 
Sbjct: 1   MSITGSMYTGISGLKAQSQATSVVSNNLANSTTTAYKSSSITFEDVFYSTVYAGGSVGQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              VT  S N +       + +SA         F  + +         N+          
Sbjct: 61  GNGVTVASVNTDYSQGSYESTNSATDVAINGNGFYVVID-----PDTGNTYYTRAGNFTF 115

Query: 110 SLESYSKNLSEDILGKTVIDNA--------------EEVVQNFNTSAREVQKIRADADKE 155
           + E Y ++   + +    +++               +      +     +     + D  
Sbjct: 116 NTEGYLEDAHGNKVQGWAMNDGSIEGTLTDIVIDQSQSPPNATSEVGFSLNLDSTETDHT 175

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
                     F +     + A+     +        D+             + T      
Sbjct: 176 TSATNPYAALFEAYDGTADPALGDSAYAYSTTISVFDENGSAHDVTVYFDPVETDDGTIV 235

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--- 272
              V T +G+                +  + + +      G +VS    +          
Sbjct: 236 WEYVVTCNGSEDNRDFNGTEMNATSGAGMLMTGTVTFSSSGDIVSMTAFTLSDTPTNLTD 295

Query: 273 --------------KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
                                 +     ++Q   +   +  + +       +        
Sbjct: 296 PLAAENWVLADFDADGFPVFSANFTGADEDQPIALNLGMANTNTTGTGWDTSGGISSLAD 355

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                   D                   + +            +     +     L   Y
Sbjct: 356 FTPTTAVGDLPAFNNGVVQTTTTTSTSLSSATYSLSQDGYAPGVLINVAIDENGVLSGEY 415

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +   +      +A       L     N         S    +       F  I+ +   
Sbjct: 416 TNGQTQELYTIALANFTNTQGLSSQGSNLYS--ATTESGQAFIGTPGSAGFGTIASNSLE 473

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V+   EL+ LI ++ +Y  + K+I   D +L   +   +
Sbjct: 474 QSNVDTATELTKLIILQAAYQANAKVITTADTLLSAAISMKR 515


>gi|307945687|ref|ZP_07661023.1| flagellar hook-associated protein FlgK [Roseibium sp. TrichSKD4]
 gi|307771560|gb|EFO30785.1| flagellar hook-associated protein FlgK [Roseibium sp. TrichSKD4]
          Length = 617

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 143/452 (31%), Gaps = 12/452 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---TTISPENVTV---VT 54
           M L +  N A        +Q     +NI N D   Y ++             V+      
Sbjct: 1   MGLTSALNNALFGVTFNQRQLDVTSQNIANKDTVGYTKKQVEANVFYDGNGGVSGLLAAE 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 N          +  G    +  + +  + +        S     S+   SL S 
Sbjct: 61  ITRVVNNEIQSSYLDSLADTGYGAKIAQYTSDLDAIFGTISDGTSVQALASRFTTSLSSL 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + S      TV+ +AE +     TS  ++Q +R   D+E+  ++ ++   LS L  V 
Sbjct: 121 INDPSSRTAQTTVVADAEALAYEIRTSYEQIQDLRQRTDRELAAQVEDINALLSSLADVE 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-TLFETVPR 233
             I+    +       LDQRD  L+ +S+ + ++  +  ++ + + T +G   L +    
Sbjct: 181 TDIRESNLADSSTAQLLDQRDRYLEDLSKYLDVNIKINVDDSLKITTRNGELLLSDGQAS 240

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            + F +       +   PI +     +  +   +   G I  L ++RD V    Q+QLD+
Sbjct: 241 KLTFTETPILKPGASGQPIMVRTPGGTEYDLVESSASGTIVGLAELRDEVFIEAQDQLDQ 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  +  + + +                  +  L       +  +           + + 
Sbjct: 301 IAAEMTLALNARTVEGTEVTVGSEEGETLDLSSLKPGE--KVEVSYTDASGQAQTVTLIA 358

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      +                      +   V  ++     L  + +    L+
Sbjct: 359 VDDPAFLPLEDDATPRTDDTVFGLDISSGTAATIVGYAVTALSGTG--LAASNDGSDNLQ 416

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                   + +    +   ++ S +  +G+N+
Sbjct: 417 VLGDSGASIELDGLTLKGSVTGSSNEGLGLNI 448



 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/335 (9%), Positives = 93/335 (27%)

Query: 144 EVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
            + ++R +   E + ++  +   ++           +     +  + LD   +   +  E
Sbjct: 282 GLAELRDEVFIEAQDQLDQIAAEMTLALNARTVEGTEVTVGSEEGETLDLSSLKPGEKVE 341

Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
           +       +     ++   D   L          +        S      I G  V++  
Sbjct: 342 VSYTDASGQAQTVTLIAVDDPAFLPLEDDATPRTDDTVFGLDISSGTAATIVGYAVTALS 401

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
           G+ +      +                    +  +   S +        +     +    
Sbjct: 402 GTGLAASNDGSDNLQVLGDSGASIELDGLTLKGSVTGSSNEGLGLNIFTDNRDGEVNFTD 461

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
              +     G +  I VN   +S  S L    +   +   N    A +            
Sbjct: 462 YLENGGQRTGYAIAIDVNSALKSESSLLVFHTTTPSQNSENDPARAEFMLDALTKSTEVY 521

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                          +++ +    + +      D+         +  + +  Y  +  V+
Sbjct: 522 NADTGIGTKSSPYEGSVMNFINQVVAYQGNQAEDAQTYSASKSALTENFAIRYEESYAVD 581

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           L EE++ L+ ++ +Y  + +++   +++   LL  
Sbjct: 582 LDEEMAQLVNLQNAYAANARVMQAVNELFDRLLGA 616


>gi|220917665|ref|YP_002492969.1| protein of unknown function DUF1078 domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955519|gb|ACL65903.1| protein of unknown function DUF1078 domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 428

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/486 (9%), Positives = 101/486 (20%), Gaps = 64/486 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           MSLL   +        +S + + +  NI NA+   +         +     +        
Sbjct: 1   MSLLTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGL 60

Query: 60  -KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNNSPTHYISKLRDSLESY 114
              +          A+    L                       +      +     + Y
Sbjct: 61  GSRLAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             NL    +     D +  +    +         +  A   +                  
Sbjct: 121 LVNLEGLRVQGFPADPSGALAGLPDDLLVGTASAQPRATTRL---TLKANLQADAAVPTA 177

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +  +    +   D L    +  +          D                  
Sbjct: 178 AWDPANPGATSNFSTTMTVYDALGAGHAVQVYFRKTGDGAWDWH---------------- 221

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + T  +         +   +    A   G     +    S  P  Q     + 
Sbjct: 222 -------ALTDGAGVAGGTAGQLTQIAGGTLAFGDGGELTSMTQTSSFTPAGQAAPQPLD 274

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + S                                   +    Q+ +  +    G
Sbjct: 275 FSFGDATSAGGTG------------------------------LAGVTQFSATSASTFIG 304

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     +   + +   +      VAG      L     N +   +  
Sbjct: 305 QDGYGSGQLASVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLL--QQTP 362

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +          +         V+L E+   LI  ++++  ++K I   D++L  
Sbjct: 363 GSGQPVVGAAGSGGRASVVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSE 422

Query: 475 LLEGVK 480
           L+   +
Sbjct: 423 LIAMKR 428


>gi|303326311|ref|ZP_07356754.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3]
 gi|302864227|gb|EFL87158.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3]
          Length = 503

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/505 (8%), Positives = 110/505 (21%), Gaps = 29/505 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53
           + +            SQ       N+ N     Y +++T+ +                  
Sbjct: 1   MNSALYIGATGMKGLSQGMQVTTNNLANVSTIGYKQQNTLFSDMLSTSQGGTGDWWNAQE 60

Query: 54  ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                  Q  +   +          A+     +       +         N         
Sbjct: 61  NSRVALGQTGKGVQVDAVRTIFQQGALEATNTVTDMAINGKGFFQVSDGANLYYTRAGDF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           R   E   +  +   L     +    +             + A +   ++L ++      
Sbjct: 121 RPDNEGVWRTPTGLALNGYQYNTDGSLGGLQEVKIDRFGTMPAKSTARVDLTLNLNSNQN 180

Query: 168 SELTVVNDAI-------KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                 N                         Q   L     +   ++       D    
Sbjct: 181 KTEDADNPYFGLLGLYNAAGKPPLSSDSYAYSQAMTLYDADGKARTVTAYFDGTPDSTAG 240

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQ 277
           +     +             N    +     +              G +     ++    
Sbjct: 241 SMIEFVIAAGAAAGKTDADGNPVQPSEGDGLLMSGVLQFDASGRLTGMSAFTPSVEGSKN 300

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           + D      +  L ++              A            +   D       G    
Sbjct: 301 LADWQPAQLEGGLPQLNLDGAAMTVNFGISAAGGWQNAPASATEVGTDQSKLPSMGADAV 360

Query: 338 ICV--NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                   Y S+            +   +   +     ++  Y +   +N    PV    
Sbjct: 361 RAEGATTAYNSSSPTGAYKQDGYAEGTLSTIGINPDGTVVGRYSNGQGQNLWQIPVCRFT 420

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +   L     N         +   ++ +     +  ++        V++  E+  +I  +
Sbjct: 421 SEDGLRREGSNLFS--ATEEAGQMEMGVAGTENYGTVNAYNVENSNVDMATEMVNMIITQ 478

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  ++K++   D+MLQ  +E  +
Sbjct: 479 RGFQSNSKVVTTADQMLQKAMELKR 503


>gi|196033295|ref|ZP_03100707.1| putative flagellar hook protein FlgE [Bacillus cereus W]
 gi|195993729|gb|EDX57685.1| putative flagellar hook protein FlgE [Bacillus cereus W]
          Length = 437

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 128/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNVVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        S       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +               +  TL   + +    E ++ 
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAE----------GNSLTLRVNIKQKTESETVDG 216

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V       +   V V ++  +      I+ +   +  +     N       V     +
Sbjct: 217 KVVEKPKAGEYTYSVSVRNDSKNEKEFKPIEGMPDDKPLIFDNSGNLKQTDEPVQKDPVT 276

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +    G                +      G++  +     Y +  +      +     +
Sbjct: 277 GEITKGGT---------------ITIPFGDGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|148976400|ref|ZP_01813106.1| flagellar hook-associated protein K [Vibrionales bacterium SWAT-3]
 gi|145964223|gb|EDK29479.1| flagellar hook-associated protein K [Vibrionales bacterium SWAT-3]
          Length = 626

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 133/401 (33%), Gaps = 19/401 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +                 V V 
Sbjct: 3   SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVIQGVNDPRQYGGQTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  ++    +   Q    +   M +           +++  DS+++
Sbjct: 63  NVRRSWDQFAVNELNLSTTNAANKGDTQGNLDMLSNMLSSVASKK-IPENLNEWFDSVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K VI+ A  + +  N     V++     +K++++ I  + +   E+  V
Sbjct: 122 LADTPNDVGARKVVIEKAGLLTKTLNEFHETVRQQSDSTNKKLDMGIERVNQLAIEIRDV 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D  DQ + L+ ++S    ++   R+N     V+  +G TL     
Sbjct: 182 QRLMMRTP---GPHNDLRDQHEKLINELSGYTKVTVTPRSNAEGFNVHIGNGHTLVSGSE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++      +     ++G  +     S+   GKI A+L +RD  +P   ++L  
Sbjct: 239 ASQL-KMVDGLPDAHQRRLAIVEGKSLKP-ITSSDIDGKIGAMLDMRDEHIPAIMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKD--LDNKLCQGISETICVNPQYRSNPSF 350
           +A       +       +     G  +   +    +         ++      +  + S 
Sbjct: 297 LATAFSYKVNALQEQGLDLNGNVGKNLFTDVNSELVAKSRVTASGQSKADVAVFIDDTSA 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
           L+ G    K    +        + +    DS    F  D +
Sbjct: 357 LKGGEYGLKYDGSDYVVTKPSGETVKVSTDSSGNAFYLDGM 397



 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/399 (9%), Positives = 108/399 (27%), Gaps = 6/399 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    +  L D+ +     +    L      + +  +          
Sbjct: 227 IGNGHTLVSGSEASQLKMVDGLPDAHQRRLAIVEGKSLKPITSSDIDGKIGAMLDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQK 200
           +  I  +  +        +     +   +N  +     +  ++      R          
Sbjct: 287 IPAIMDELGRLATAFSYKVNALQEQGLDLNGNVGKNLFTDVNSELVAKSRVTASGQSKAD 346

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDGVVV 259
           ++  I  ++ ++     + Y      + +     +     +S      +   + I     
Sbjct: 347 VAVFIDDTSALKGGEYGLKYDGSDYVVTKPSGETVKVSTDSSGNAFYLDGMRVEIRNPPE 406

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +    P     A + +  +       Q  E +       +    +         + +
Sbjct: 407 LGEKLLLRPTRNFAAQIHMATTDPKDIAAQSYEASTTFAKGTAGFKILEAGQLREFEVIV 466

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           +   +       +G           +   +       ++   L N K  A          
Sbjct: 467 SPKGEQFAVTDPKGNILMQPQPYPPQGPVTINGTTFELTAGALANDKFTANLVPSEGDNG 526

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +      +       +   T+L+   N         S ++ L   + +      E  ++ 
Sbjct: 527 NLRKLQDLQTGKILNDGESTILDLYHNLNTNTGLKSSTANRLSDIATLEKQSAQERIASI 586

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 587 SGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625


>gi|307699881|ref|ZP_07636932.1| putative flagellar hook-associated protein FlgK [Mobiluncus
           mulieris FB024-16]
 gi|307614919|gb|EFN94137.1| putative flagellar hook-associated protein FlgK [Mobiluncus
           mulieris FB024-16]
          Length = 976

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 97/301 (32%), Gaps = 18/301 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +  +R       D  L   +      + + S     E  S D+    S ++ + +
Sbjct: 63  GGGVEITGERRLGDFFLDAKLRMETGRAASTKEITSGWKNVES-SMDELGKKSLSNAMRE 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + +        T I NA  +V    T    +  +  +   E++  +++L   
Sbjct: 122 FYKSWGDVNNSSDNLGARATAIGNARALVDQIKTGYTHINDLWKNGRAELDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +  +  +ND I+  TA   + +  +D+RD L   ISE+ G +     +        + + 
Sbjct: 182 MDSVLALNDRIRKGTAMHANVNHLIDERDKLALHISELTGATVRKGYSVYTAENAPNASM 241

Query: 227 LFE--TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           + +             NS    +  N   +DG        +A  +   KA+  + +S  P
Sbjct: 242 IGKGYEDGSIEIMLAGNSMVGKNYVNHFKVDGSRDMPGIDAAPREVYRKAVKALGNSTTP 301

Query: 285 I 285
            
Sbjct: 302 P 302



 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 337 TICVNPQYRSNPSFLRDGGSV---SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           T     +   +        +    + +    + +       +           +      
Sbjct: 831 TFTNEKEDGGDFFTFAAANNNLPPALRLGVAIDDPMKIAAGVYKNGVYDGSVALRIGNQQ 890

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            +   TL E+ ++ +  +  + S + D +  ++       +   +   V++ EE+  LI+
Sbjct: 891 DSATSTLNEWGKSVV-DVGVHASGARDSYNLAEQTRRIADQQQKSQSSVDMNEEVMNLIR 949

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +Y  + ++    + ML+TL+   +
Sbjct: 950 GQHAYAGAARITSTVNSMLETLINLGR 976


>gi|261211316|ref|ZP_05925604.1| flagellar hook-associated protein FlgK [Vibrio sp. RC341]
 gi|260839271|gb|EEX65897.1| flagellar hook-associated protein FlgK [Vibrio sp. RC341]
          Length = 624

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 124/332 (37%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +  A+K ++L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDIANKGLDLGVERINQLAIEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R N     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIGNGHTLVSGSE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ +  T +     I+G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-KVIDGFPDTQQHRLAMIEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LAISFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/397 (8%), Positives = 103/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGSEASQLKVIDGFPDTQQHRLAMIEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLAISFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIDDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++ + +   +     + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATDDATKIAAQSFEASTTFAQGKAKFNILQAGAVREFEVHVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               +       +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPSGPVTVQGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|117919778|ref|YP_868970.1| flagellar hook-associated protein FlgK [Shewanella sp. ANA-3]
 gi|117612110|gb|ABK47564.1| flagellar hook-associated protein FlgK [Shewanella sp. ANA-3]
          Length = 641

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 126/439 (28%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVDD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFTGLNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + +++A+++  + N     +       + +I      +     EL  +N
Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSSLNGQMTQTNDQITGMTKRINEISKELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               K              I    V+++   +   G++ AL + RD  +    ++LD++A
Sbjct: 239 TMDTKTGDPFPNELQLTSSIGSQSVAADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    L +             SN +     
Sbjct: 297 LGIADNFNKMQAQGFDLNGQVGSNIFRDINDPLMSLGRVGGY---------SNNTGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +N +        +        
Sbjct: 348 GVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIDIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S    +   +    N I+
Sbjct: 408 ASGDRFVIRPTAGAANGIT 426



 Score = 97.0 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/364 (10%), Positives = 95/364 (26%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +       +   A  +  NFN    +   +       I  +I++    L  +   ++ 
Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQAQGFDLNGQVGSNIFRDINDPLMSLGRVGGYSNN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T   +     L          +              +   T +G+TL       I+
Sbjct: 342 TGNATLGVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +       +       ++     +   K  A    + +               
Sbjct: 402 IKAGAMASGDRF---VIRPTAGAANGITVEMTDPKGIAAASPKITADAANSGNTQVKLTQ 458

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +    +   PI G+   +     A                          +         
Sbjct: 459 ITNRSAANFPITGSELTIQLDTTAIPPTYEAFDASGTSLGAAAPYTPPSISAFGFTFEVD 518

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +         TL +   N+   +     
Sbjct: 519 STAA-ASNDRFTFNLAFAEGDNSNAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ ++        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 TSVR 641


>gi|121607561|ref|YP_995368.1| flagellar basal body FlaE domain-containing protein
           [Verminephrobacter eiseniae EF01-2]
 gi|121552201|gb|ABM56350.1| flagellar basal body FlaE domain protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 426

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/483 (9%), Positives = 105/483 (21%), Gaps = 69/483 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            F +  +  N AS+    I  N+ NA+   +                          V  
Sbjct: 2   GFQQGLSGLNAASKSLDVIGHNVANANTVGFKSGRAEFAEMVASAIGSADGLNAGIGVDV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            + ++      L    + +        F  L                     +   +   
Sbjct: 62  AAVSQQFGQGSLTITGNNLDVAINGAGFFTL------TLPDGTPAYTRSGNFKLDKDGNM 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                  +    +D A  +                   K+     +              
Sbjct: 116 ITNDAARVMGYPVDPATGLRTGAEPVGMVFPTSAPIPAKQTGTITAAFN----------- 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  +  +                  I +         + +Y     T       D 
Sbjct: 165 LDARAPDAAGNPAAQPPVPATPRTTYGTSINVYDSQGVAKPVNLYFQKTATANTWAVYDR 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +   +  V             +   Q +    GKI           P         A 
Sbjct: 225 LDDPGATPPV-----------QAMPIGQITFDNDGKITG---------PAAPAPATGFAL 264

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L    +  +P                           +   +    Q+ +  +      
Sbjct: 265 PLTIDPTPPNPNGLP--------------------AYTVQLKLDGVTQFGTRFAVSSLSQ 304

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     L+  Y +   ++     ++ I     L     N   W+  + 
Sbjct: 305 DGYTVGELAGIDIESNGMLMTRYSNGVTRSEGQLALSRIRNAQGLAAVGSN--NWVATHA 362

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +   S   F  +         V+L  EL  ++  +++Y  + + +   D+++ TL
Sbjct: 363 SGPAVVGTASDGNFGALRSGALEDSNVDLTAELVNMMTAQRTYQANAQTVKTQDQVMSTL 422

Query: 476 LEG 478
           +  
Sbjct: 423 VNL 425


>gi|261253608|ref|ZP_05946181.1| flagellar hook-associated protein FlgK [Vibrio orientalis CIP
           102891]
 gi|260936999|gb|EEX92988.1| flagellar hook-associated protein FlgK [Vibrio orientalis CIP
           102891]
          Length = 624

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 125/347 (36%), Gaps = 17/347 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNLGAQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNMPRQYGGETYGMGVHVD 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          L+  +++   +   ++   +   M +           +++  D ++S
Sbjct: 63  KVRRSWDQFAVNELNVSTTSHANKIDDEANLEMLSNMLSSVSSKK-IPENLNEWFDGVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A  + QN N     ++      +K+++L I  + +   E+  +
Sbjct: 122 LADSPNDVGARKVVLEKANLITQNLNDFHETIRHQSDVTNKKLDLGIERVNQLAVEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +D  + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDTHEKLIAELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     I+G  + +     +  GK+ ++L +RD  +P   ++L +
Sbjct: 239 SS-ELKMIDGYPDVHQRRLAMIEGKGIKAITTKDI-DGKLGSMLSMRDEKIPQLMDELGK 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +A       ++      +     G  +   +        + ++ +  
Sbjct: 297 LATSFSYEVNKLQSQGLDLRGNIGGLMFTDVNSDIVAESRVVTSSNS 343



 Score = 92.4 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/414 (11%), Positives = 118/414 (28%), Gaps = 14/414 (3%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
              +    K     + H  N  T         L+              +I+         
Sbjct: 210 TKVTVTPRKNAEGFNVHIGNGHTLVSGTESSELKMIDGYPDVHQRRLAMIEGKGIKAITT 269

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
                ++  + +  D++I   +  L +  +  +   + ++ +          L   DV  
Sbjct: 270 KDIDGKLGSMLSMRDEKIPQLMDELGKLATSFSYEVNKLQSQGLDLRGNIGGLMFTDVNS 329

Query: 199 QKISEIIGISTIVRN--------------NNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             ++E   +++                    +  +  S G         +     +    
Sbjct: 330 DIVAESRVVTSSNSKADLAVYIEDTNQLIGGEYSLQYSGGDYYITRPSGEQFIVPVVDNA 389

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           ++ +   I I   + S  +    P     A +++  +       Q  E +       ++ 
Sbjct: 390 ISLDGIRIDIRNDLESGERVLLRPTRSGAAQMRVETNDPSAIAAQSYEASTTFAQGTAKF 449

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           +     +     + I+   K       +G       +       +       ++   L N
Sbjct: 450 NIAQAGALREFEVVISPDGKQFAVTDTKGKVLLQPQDYPPTGAVTVQGTSFELTGGALPN 509

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            K  A          +      I           T+L+   N    +    S +  L   
Sbjct: 510 DKFTANLVPSEGDNGNLLKMQNIQTDKKLNGGESTILDIYHNLNTDVGLQMSTASRLTDV 569

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 570 SRLEKEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 623


>gi|170024641|ref|YP_001721146.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           YPIII]
 gi|169751175|gb|ACA68693.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           YPIII]
          Length = 554

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/555 (12%), Positives = 146/555 (26%), Gaps = 80/555 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  N A    +++  NI N     Y R++T+   +             V
Sbjct: 1   MS-NSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV     E        L A  +            +  + + ++   +N+ +  +     +
Sbjct: 60  TVTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSN--ASNNLSTTMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEV-------------------------VQNFNTSAREV 145
           L++   N  +D   KTV+  AE +                             N  A ++
Sbjct: 118 LQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQI 177

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
            K+     +      S     L +   +   +    A      D           +S + 
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQ 237

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--------------- 250
           G +             +  T  ++    +      +  T  S                  
Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQ 297

Query: 251 ------------------PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                                I+G         A P     A  Q   S+   +++    
Sbjct: 298 LGQLALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKV 357

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NP 348
            A      F   D       +   +    G+    +   +     I ++         + 
Sbjct: 358 KASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQAKDK 417

Query: 349 SFLRDGGSVSKKFLWNVKN-----LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++   +V+      + +      AG  D       +            +    TL   
Sbjct: 418 FTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGA 477

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  +    + +         +   ++    +  GVNL EE   L + +Q Y  + +
Sbjct: 478 YAGLVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQ 537

Query: 464 LIMFTDKMLQTLLEG 478
           ++     +  TLL  
Sbjct: 538 VLQAASTLFNTLLSI 552


>gi|119775450|ref|YP_928190.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B]
 gi|119767950|gb|ABM00521.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B]
          Length = 453

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/483 (11%), Positives = 110/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +    A +   +   NI N +   +                     +    VT 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYAASIFSNSKTQVGGGVTT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+A+        F     + SAD    +         +    +Y 
Sbjct: 62  TQVAQQFHQGSLQFTSNALDLAISGGGFF----VTSADPSARDYSFTRAGAFKVDSNNYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+ R VQ         +   +               
Sbjct: 118 VDSAGNFLQTFPVDKFGNSTSVSLTTTRPVQIPDTAGSPVMTENVG-------------V 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +      K       D  D      S    I   +   + +  Y               
Sbjct: 165 QMNLNAGEKTKDPAAFDPDDPTTFNNSTSSTIYDSLGEPHILTTY------FVRPNDGAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E         +  P+ + G   +    +                              
Sbjct: 219 TGENNWVAYYALDGQPVNLGGGAGTYQTDTD-------GDGVPDTPATAQTTGGWTGSVL 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               + +            P      GI        Q ++       QY S         
Sbjct: 272 TFNSTGTYTGTNPAIITTEPLGIGGAGILGPGADGSQTLTINFANPTQYASAFEVTELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W E   
Sbjct: 332 DGTTVGRLTNVEVGEDGLIKAAYSNGSTVPLGRVALVRFANEQGLTQVGN--TSWKESLA 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      +   F  I  +      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGTALAGEANSGTFGAIRSAALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|256371026|ref|YP_003108850.1| flagellar hook-associated protein FlgK [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007610|gb|ACU53177.1| flagellar hook-associated protein FlgK [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 462

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/474 (13%), Positives = 155/474 (32%), Gaps = 33/474 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRS 57
                A +           + +N+ NA+   Y                  + VTV     
Sbjct: 4   GALYIALSGLEAQQVGLDVVAQNVANANTPGYQSESVDLANQQLPGSPVGDGVTVQGVLQ 63

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                   +     +A      L S     +  S  +  +   +  ++ L  +    S  
Sbjct: 64  AQNTFARSLELGSQAASSYATQLSSTLTAAQSGSFQEPSSTGISEQLNGLWSAFGQLSDT 123

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            ++    ++V+  A++V +  N +A  +  +  D  ++  L ++ +   L+++  +N  I
Sbjct: 124 PTQLASAQSVVAAAQQVAEALNQAASNLTGLFNDTSQQASLLVAQVNTQLAQVASLNGQI 183

Query: 178 KFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
             ++  +   A+  +D R+ +L +++  IG + +  ++  + V     T +  T    + 
Sbjct: 184 AAQSGGEVGAANSLIDARNQVLSQLANEIGATVVPASSQQVNVLVGGVTLVQGTQSNALA 243

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  +  + S    I     S+     V  G +  +L   ++ +P +  QL+  A+ 
Sbjct: 244 AAIAAPGSPPTASGTAQILLAGTSTQV--PVTSGSLGGMLASLNNNLPRYGTQLNATAQA 301

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L    +                IA     +        + +I VNPQ  ++PS L    +
Sbjct: 302 LATQVNGLLASG--QTQGTTGPIAGPPLFVAAGGGTLDAGSIAVNPQIEASPSLLAASTT 359

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                                  ++                         ++G +  +  
Sbjct: 360 PYAGGNGQNAAAIANLGSAADGPNALW---------------------SQAVGQVGLDVQ 398

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +  L   +         +  ++VGV++  +L  L+  +Q+Y  + K+I    +
Sbjct: 399 SATSLATSAAQQAQSAQTAEQSSVGVDVNGQLVNLVTYQQAYQAAAKVISTVQQ 452


>gi|66768556|ref|YP_243318.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573888|gb|AAY49298.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 624

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 124/408 (30%), Gaps = 16/408 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKISD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDSLYSNTA--TNVAGLWSNFFDSASAL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I     +     D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTIGNSIDNASA--DLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAA 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R +V+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSPSS--LGGQIGGLLEFRSNVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  SF+       +     G    +          +                   ++ 
Sbjct: 296 VGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLGAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                   W          +      +     + + V+ +        
Sbjct: 356 TLSFDAGSWKATRTDTGSTVPLTGTGTAADPLVVNGVSMVVGGAPANG 403



 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/474 (10%), Positives = 118/474 (24%), Gaps = 46/474 (9%)

Query: 23  SIVRNIENADN-------------KNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLH 68
           +I  +I+NA                 Y     +       NV     ++         L 
Sbjct: 181 TIGNSIDNASADLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAAKLT 240

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
             +      +L  + +   + +S            + + R +            + +   
Sbjct: 241 TVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSN------------VLEPTQ 288

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
                +     +S         D    +     N+    +     N      TAS  +  
Sbjct: 289 AELGRLAVGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLG 348

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
               Q             ++      +     T  G+T+       +      +  +   
Sbjct: 349 AVDGQ------------NVTLSFDAGSWKATRTDTGSTVP------LTGTGTAADPLVVN 390

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
              + + G   + ++    P   +   L +  +            A   I +        
Sbjct: 391 GVSMVVGGAPANGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATIANLGTGKISD 450

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--SKKFLWNVK 366
               N     +            Q   +                           + +  
Sbjct: 451 VKVTNAQNPALLTPSSVEFIDANQYTIDGTGPFAYTPGQTISANGWSFALDGAPKVGDTF 510

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +       +   ++     + D  A     VTL          +      ++      +
Sbjct: 511 GVGPMGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSVGSAARAANYAADAQE 570

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V+ +    S  +  GVNL EE + ++K++Q+Y  + ++I   D + Q +L  V+
Sbjct: 571 VINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTIFQAILGAVR 624


>gi|229522140|ref|ZP_04411557.1| flagellar hook-associated protein FlgK [Vibrio cholerae TM
           11079-80]
 gi|229341065|gb|EEO06070.1| flagellar hook-associated protein FlgK [Vibrio cholerae TM
           11079-80]
          Length = 624

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 121/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.2 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLIPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|319764539|ref|YP_004128476.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC]
 gi|330826755|ref|YP_004390058.1| flagellar hook-basal body protein [Alicycliphilus denitrificans
           K601]
 gi|317119100|gb|ADV01589.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC]
 gi|329312127|gb|AEB86542.1| flagellar hook-basal body protein [Alicycliphilus denitrificans
           K601]
          Length = 426

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/483 (9%), Positives = 118/483 (24%), Gaps = 69/483 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55
            F +  +  N +S+    I  NI N++   +    T                     V  
Sbjct: 2   GFQQGLSGLNASSKNLDVIGHNIANSNTVGFKASRTEFASMVATAIGTASTGNAGIGVQV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      +    + +        F  +++         +         +   +   
Sbjct: 62  GAVAQQFTQGNITVTGNNLDVAINGNGFFKIQQ------PDGSFAYTRAGNFKLDDKGNV 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              +   +    +D                                              
Sbjct: 116 ITNNGGKVMGYPMDP--------------------------------------------- 130

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +             +  K +  I  +  +             T      PR  
Sbjct: 131 -ITQTRTASTPQPLVFPTGAPIPAKQTTSIKATFNLDARAPDAAGNPSATPPIAATPRST 189

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
               +N Y     + P+ +      +     V        L   ++  P+    + ++  
Sbjct: 190 YGTSLNVYDSQGVATPVSLYFQKTGTANTWDVYDR-----LDDPNATPPVVATPIGQITF 244

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G  +        +     + IA    + +N     +   +    Q+ +  +      
Sbjct: 245 DNNGQITGPAATPPATGFQLPITIAPPTPNPNNLPAYTVQVNLDGVTQFGAKFAVSDLTQ 304

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N+     ++  Y +   +      +A       L +   N   W+E   
Sbjct: 305 DGYTAGQLTGINIGDDGTIMTSYSNGVTRAEGQIALASFRNAQGLADIGNNL--WVETFE 362

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    + + ++  F  +         V+L  EL  ++  +++Y  + + I   D+++ TL
Sbjct: 363 SGQPVMGVATEGAFGALRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTL 422

Query: 476 LEG 478
           +  
Sbjct: 423 VNL 425


>gi|264676576|ref|YP_003276482.1| flagellar hook-associated protein FlgK [Comamonas testosteroni
           CNB-2]
 gi|262207088|gb|ACY31186.1| flagellar hook-associated protein FlgK [Comamonas testosteroni
           CNB-2]
          Length = 643

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 115/370 (31%), Gaps = 14/370 (3%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSEN 59
                        +   NI N +   Y R+      S               V T     
Sbjct: 2   GARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGNGYIGNGADVATILRNF 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             + ++   A ++A        +     + +       N     I+ + ++    S   +
Sbjct: 62  SELLNRQATAATAASAADSARSNSLNQLQEVF--SGGTNGLGAAINDMMNAFADVSSAPT 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    + V+    E+   F +++ ++ ++     +++  +++ +     ++  +N  I  
Sbjct: 120 DSSARQVVLTRMSELAARFRSASAQLDEMDYSTRQQMSNDVNVVNSLSQQVAALNGQISS 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             A+ H  +D LDQRD L++ I++ +  S +   +  + ++      L           +
Sbjct: 180 AIATGHTPNDLLDQRDQLVRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQ 239

Query: 240 MNSYTVTSESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            ++    S    ++    G        +    G+I  LLQ +++ +   +N L  M   +
Sbjct: 240 ESTQYPGSGKMSLYFQQQGGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISI 299

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + + ++ +        G  + +                         + S L+     
Sbjct: 300 GDTLNAQNQLGLTLSGQKGGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALKASDYK 359

Query: 358 SKKFLWNVKN 367
                   K 
Sbjct: 360 IVFGNDAPKG 369



 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/444 (10%), Positives = 117/444 (26%), Gaps = 19/444 (4%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  NK +    + A   +I           L +  +      ++      K+    +  
Sbjct: 198 VRDINKYVQTSQVDAGDGSISLFVGGSQPLVLGQSAAKLSLQESTQYPGSGKMSLYFQQQ 257

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL------S 168
                E             ++Q  N    E + +       I   ++   +         
Sbjct: 258 GGQPVELTPAMAGGGEIAGLLQFQNNDLSEGRNLLGRMVISIGDTLNAQNQLGLTLSGQK 317

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI----IGISTIVRNNNDMVVYTSDG 224
              + N  +    ++        D   V ++  S +      I          VV  SDG
Sbjct: 318 GGALFNIPMTTTGSTTGAQWVQPDTPTVTVKDSSALKASDYKIVFGNDAPKGKVVRLSDG 377

Query: 225 TT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PKGKIKAL 275
            T     L +     I+  + +          +    V  +++    +        +   
Sbjct: 378 QTTAFNDLTDLRGMTIDGLQFDLKNDGQAGQSVLFSPVASAAHDIQTMVHSGNDLAVANP 437

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
           +  + + +     ++  +        S        S    G                   
Sbjct: 438 VSAKINSLGDAAVRMSSLKVEKGFDASVFPAGTTLSFAPDGAGGMTYTITPAPSGVAATG 497

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             I       +    +   G+ +     +     G     +    + +           +
Sbjct: 498 AYISGQAIELAPGLKVTLTGTPAVDGATSDTVSFGPNSFYSSDTGNASSFLSLRDAVIFD 557

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL +    ++  +      +      S  +  ++    +   GVNL EE + L++ +
Sbjct: 558 GATTLSDGFSTAMAQIGTRTQSAAYAAKLSDSIAKNLEGDRTAVSGVNLDEEAAKLLQYQ 617

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           QSY  S K++     +  ++++ V
Sbjct: 618 QSYQASAKMLQVAQGIFDSVIQAV 641


>gi|167644975|ref|YP_001682638.1| hypothetical protein Caul_1010 [Caulobacter sp. K31]
 gi|167347405|gb|ABZ70140.1| protein of unknown function DUF1078 domain protein [Caulobacter sp.
           K31]
          Length = 556

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/556 (10%), Positives = 133/556 (23%), Gaps = 76/556 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVT 54
           MS+ +      +   + S   A+I  NI N +   Y R     +            +   
Sbjct: 1   MSINSAMLAGVSGLISNSSALAAISDNIANVNTVGYKRSSANFSTLVTAQSKSATYSAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +++      +     + +S +        F    E        +          +    
Sbjct: 61  VKAQTHQFVSQQGLTQSTTSNLDLSIAGSGFFVGTEKPEGLTATDTRSFTRAGSFQLDNL 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y KN +   L   + D     +    +   ++  I          + + +    +  + 
Sbjct: 121 GYLKNDAGLYLQGWLADPVTGTITPDPSDLTQLSSINVGTVGGTAEKTTRIGVNANLRSE 180

Query: 173 VNDAIKFKTASKHDA-HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              +      +   A  D     +      S     +          V  S GT  F+ V
Sbjct: 181 QPVSAAANAVATKTAVIDSGGATNNYSVYYSPTGTGNQYQVEIRKAGVAVSTGTATFDPV 240

Query: 232 PRDINFEKMNSYTVT---SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             ++    +            N +    + +++   +            + D  +     
Sbjct: 241 TGNLLSTTLPGTPPNLNIGGGNTVTQTQLGLNNKTDAVSSGAYDPTTRSMSDYALDNTTG 300

Query: 289 QLDEMARVLIGSFS-------------------------------EKDPIAGNSENVPGL 317
              +    +  S S                               + +     +      
Sbjct: 301 VKPDFEIQIPVSDSKGGQRTITLSLLKGPGPNEWFAELRAKPGDLDNNANGQIASGKVTF 360

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                +  + N         I +                       N++           
Sbjct: 361 TTDGKLASVGNLFGGVTPTAISIGASDPLAVGTAPRWADGLGIDAQNLQVDLASASGGLT 420

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEY---------------------------------A 404
             +S +     +       N+T +E                                   
Sbjct: 421 QYNSQSVVQSVNTNGTAFGNLTNIEVDDKGYVSAIFDNGVTRRIAQVAIATFSNPNGLKG 480

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +   N S ++ L          I+ S      V+L  E + LI  +++Y+ S+K+
Sbjct: 481 VNGNAYRVTNESGTYSLKTPGGGGAGSIAPSTLEASTVDLSTEFTGLITTQRAYSASSKI 540

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D+ML+ LL   +
Sbjct: 541 ITTADQMLEELLSIKR 556


>gi|153213645|ref|ZP_01948918.1| flagellar hook-associated protein FlgK [Vibrio cholerae 1587]
 gi|153825351|ref|ZP_01978018.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-2]
 gi|153829350|ref|ZP_01982017.1| flagellar hook-associated protein FlgK [Vibrio cholerae 623-39]
 gi|229524186|ref|ZP_04413591.1| flagellar hook-associated protein FlgK [Vibrio cholerae bv.
           albensis VL426]
 gi|229528804|ref|ZP_04418194.1| flagellar hook-associated protein FlgK [Vibrio cholerae 12129(1)]
 gi|262191683|ref|ZP_06049859.1| flagellar hook-associated protein FlgK [Vibrio cholerae CT 5369-93]
 gi|124115844|gb|EAY34664.1| flagellar hook-associated protein FlgK [Vibrio cholerae 1587]
 gi|148875191|gb|EDL73326.1| flagellar hook-associated protein FlgK [Vibrio cholerae 623-39]
 gi|149741035|gb|EDM55104.1| flagellar hook-associated protein FlgK [Vibrio cholerae MZO-2]
 gi|229332578|gb|EEN98064.1| flagellar hook-associated protein FlgK [Vibrio cholerae 12129(1)]
 gi|229337767|gb|EEO02784.1| flagellar hook-associated protein FlgK [Vibrio cholerae bv.
           albensis VL426]
 gi|262032422|gb|EEY50984.1| flagellar hook-associated protein FlgK [Vibrio cholerae CT 5369-93]
 gi|327484710|gb|AEA79117.1| Flagellar hook-associated protein FlgK [Vibrio cholerae LMA3894-4]
          Length = 624

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 121/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.2 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|229513835|ref|ZP_04403297.1| flagellar hook-associated protein FlgK [Vibrio cholerae TMA 21]
 gi|229349016|gb|EEO13973.1| flagellar hook-associated protein FlgK [Vibrio cholerae TMA 21]
          Length = 624

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 125/347 (36%), Gaps = 17/347 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKAKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +A       +       +     G  +   +        + ++ +  
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIASSRVVTNSNS 343



 Score = 93.2 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIASSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|228945356|ref|ZP_04107711.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814328|gb|EEM60594.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 437

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 130/478 (27%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  V    +        +       +      ++     +        +          
Sbjct: 107 NGGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKNGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              ++    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALAHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +      G++  +     Y +  +      +     +
Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTISTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|127512285|ref|YP_001093482.1| flagellar hook-associated protein FlgK [Shewanella loihica PV-4]
 gi|126637580|gb|ABO23223.1| flagellar hook-associated protein FlgK [Shewanella loihica PV-4]
          Length = 638

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/443 (11%), Positives = 125/443 (28%), Gaps = 27/443 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+  + N A+     +  Q A    NI NA+ + Y R+    +                
Sbjct: 1   MSM-DLLNIARTGVLASQSQLAVTSNNITNANTQGYHRQVAEQSSLESQRLGNSFYGAGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +        + L    +A+ Q +  Q+  +  + + +      +    ++ L   
Sbjct: 60  YITDVKRIYNEYAARELRIGQTALSQAQTTQTKMSELDQLFSQ--IGKAVPQSLNDLFAG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L S +    +  +  +++ NA+++ +  N    ++       + +I      +    +EL
Sbjct: 118 LNSLADLPDDMGIRGSLLGNADQIAKALNQMQSQLDGQMKQTNDQISAMTDRINEISTEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +     +       LD++D L+Q++SE   ++ I   +    +       L   
Sbjct: 178 GHINQELMKSQGA---DMQLLDKQDALIQELSEYAQVNVIPLESGAKSIMLGGAVMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                                       +  +   +   G + AL Q RD  +   Q ++
Sbjct: 235 EVSMQMGATTGDPYPGELRITTTAGNQTLVVDP--SKMGGSLGALFQFRDETLIPAQLEM 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A  +  SF++      +     G  +   I D    +                N + 
Sbjct: 293 GQLALGIADSFNQAQSQGFDLNGEVGSDLFLDINDPAMSVG---------RAGAYGNNTG 343

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                                        +  ++         +N +        +    
Sbjct: 344 NAALRVNIDDVNALSGGSYELTFTAPATYELRDQETGTVTPLTLNGSQLTGGDGFSINID 403

Query: 411 LEKNRSDSHDLHMKSQVVFNHIS 433
                S        +      I 
Sbjct: 404 SGAMASGDRFEIRPTSGAAAGIK 426



 Score = 93.6 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 103/410 (25%), Gaps = 18/410 (4%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +M      +                 +       L          +   F      +   
Sbjct: 229 VMLVSGEVSMQMGATTGDPYPGELRITTTAGNQTLVVDPSKMGGSLGALFQFRDETLIPA 288

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS------ 202
           + +  +       +  +  S+   +N  +        +       R       +      
Sbjct: 289 QLEMGQLALGIADSFNQAQSQGFDLNGEVGSDLFLDINDPAMSVGRAGAYGNNTGNAALR 348

Query: 203 -EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN-FEKMNSYTVTSESNPIFIDGVVVS 260
             I  ++ +   + ++         L +     +       S     +   I ID   ++
Sbjct: 349 VNIDDVNALSGGSYELTFTAPATYELRDQETGTVTPLTLNGSQLTGGDGFSINIDSGAMA 408

Query: 261 SNQ--GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           S          G    +  +      I                ++   ++ ++ +V    
Sbjct: 409 SGDRFEIRPTSGAAAGIKVVMTDPKGIAAAAPKITQDAANSGNTQVKLVSIDNRSVANFP 468

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN-- 376
           +       +        E           P+        +  F + V   A   D     
Sbjct: 469 LTGSELTFEIDTTANTFEVFDAAGNSLGAPTAFTPPSISAYGFTFEVDASAPATDRFTFD 528

Query: 377 ------HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                    ++     + +     N   TL +    +   +      +      ++ V++
Sbjct: 529 LSFAEGDNTNAVAMAKLAETKLMNNGGSTLADVYEGTKLQVGGKAKAAEVAFGSAEAVYS 588

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  +  GVNL EE + L++ +QSY  S +++    ++  TL   V+
Sbjct: 589 QAYTRVQSESGVNLDEEAANLMRFQQSYQASARIMTTATEIFDTLFSSVR 638


>gi|85058011|ref|YP_453713.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans']
 gi|84778531|dbj|BAE73308.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans']
          Length = 404

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/473 (10%), Positives = 118/473 (24%), Gaps = 71/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N A+Q    I  NI NA    +               +             
Sbjct: 2   GFAQGVSGLNAAAQALDVIGNNIANAQTVGFKSSSASFADMFSESMIG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      +++  +       +    ++         + N  +    +
Sbjct: 50  -------------LGVQLAGVQQDFNDGTMIAGAGNINMAIAGSGFFRLADNGGKIYYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  +  +  N   + +   +A       + + +                       
Sbjct: 97  NGEFERNKYGEIVNKQGKYLTGYKATGTPLGNITVPD----------------------T 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +     L   +                                + + ++  SY  
Sbjct: 135 PMPGAVSTEGSLGDNLPSNS----------------------EPPKVAEFDIKEPKSYNY 172

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           +++       G   +        K   +  ++  D   P+  +  D+  +  I S     
Sbjct: 173 STQFTAYDSLGNPHNIKVYYIKGKEAGQWTVKCYDETAPVLLDPNDKDKKPKIFSQDITF 232

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              GN +      +      L+         T+    Q  +  +      +      +N 
Sbjct: 233 DAYGNLDEKTTPKLPFESAKLNGANELKFDITLFGLKQQGTEWTMSLPQTNGYAVGKFNG 292

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++    ++I  Y +   +      +A       L     N   W E   S +  +    
Sbjct: 293 YSVGDNGEIIASYSNQQTQLIAQVVMASFTNTGGLQPSGDNC--WTETGASGAPLIGTSD 350

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  I         V++  EL  ++  +++Y  + + I   D++LQTL+  
Sbjct: 351 TGSFGVIRGKMLEASNVDMSNELVKMMTQQRNYQSNAQTIKTQDQLLQTLVSM 403


>gi|146293684|ref|YP_001184108.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens
           CN-32]
 gi|145565374|gb|ABP76309.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens
           CN-32]
          Length = 641

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 127/439 (28%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFTGLNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + +++A+++  + N     +       + +I      +     EL  +N
Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I ++N    +       L       
Sbjct: 182 LELMKSP---NQDAILLDKQDALVQELSQYAQVNVIPQDNGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               K  +           I    VS++   +   G++ AL + RD  +    ++LD++A
Sbjct: 239 TMDTKTGNPFPNELQLMSSIGSQSVSADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    L +             SN +     
Sbjct: 297 LGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGY---------SNNTGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +N +        +        
Sbjct: 348 GVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSINIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S        +    N I+
Sbjct: 408 ASGDRFAIRPTAGAANGIT 426



 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 103/364 (28%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +       +   A  +  NFN   ++   +       I  +I++    L  +   ++ 
Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T   +     L          +              +   T +G+TL       IN
Sbjct: 342 TGNATLGVNIDDTRLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIN 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I         +   ++   
Sbjct: 402 IKAGAMASGDRFAIRPTA-GAANGITVEMTDPKGIAAASPKI---TADAANSGNTQVKLT 457

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            I + S  +     SE    L         +     G S          S  +F      
Sbjct: 458 QITNRSAANFPITGSELTIQLDTTAIPPTYEAFDASGTSLGAAAPYTPPSISAFGFTFEV 517

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            S     N +             ++     + +         TL +   N+   +     
Sbjct: 518 DSTAAASNDRFTFNLAFAEGDNSNAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ ++        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 TSVR 641


>gi|301168104|emb|CBW27690.1| putative flagellar hook protein [Bacteriovorax marinus SJ]
          Length = 426

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/484 (10%), Positives = 114/484 (23%), Gaps = 62/484 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQR 56
           M +L  FN      N   Q    I  NI NA    +                 +    Q 
Sbjct: 1   MGILRSFNIGVTGLNAVGQGMGVIGDNIANAGTNGFKSSRAEFQDVLATSLKGIDGGDQF 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                +           + +   +       +     +               + E    
Sbjct: 61  GAGTKLAHIKTLMTQGDVARTDNITDLAVNGDGFFKVNAPFGKGFTRDGSFHFNKEGELV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N     +     D   ++                  +KE  +++ +          VN  
Sbjct: 121 NSDGYQVIGFEADETGKI-----------------TNKEAPVKLGSTTIPAKASEKVNFN 163

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +   + ++    +  D         S    ++         +V      T          
Sbjct: 164 LNLDSRAEIKEFNIADPDATSNFSNS----VTVYDNVGTARLVTMYYNKTGDNQWTYRAL 219

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +  +     S        G ++ +N+G    + +            P  +   +     
Sbjct: 220 VDGADVEGGESGQFVEMAQGNIIFNNKGQLQEEVEGSNSFNFNKGAAPDQKITFNF---- 275

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                                           +      E I  + QY S  +  R    
Sbjct: 276 -------------------------------GESISEGGEGIGASTQYGSGSAIARHSQD 304

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     +      L   Y +  +++     VA    N  L +  +N +   E   S
Sbjct: 305 GFSAATLASMSFNDAGILTAVYDNGESRDISQIAVAKFENNEGLFKVGKNLM--KESRNS 362

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +    +     +         V++  E   L+  ++++  + K +   D+MLQ +L
Sbjct: 363 GEAAMGKPGESGRGEVLSKSIELSNVDIANEFVGLMTAQRNFQANAKTLTTADEMLQQVL 422

Query: 477 EGVK 480
              +
Sbjct: 423 NIKR 426


>gi|301053291|ref|YP_003791502.1| flagellar hook protein [Bacillus anthracis CI]
 gi|300375460|gb|ADK04364.1| flagellar hook protein [Bacillus cereus biovar anthracis str. CI]
          Length = 437

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/478 (9%), Positives = 128/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        +       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFGVSKDNYVTTTGGQYVLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKENVDGKEVEKPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                  +      G++  +     Y +  +      +     +
Sbjct: 280 TTGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|21231391|ref|NP_637308.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188991635|ref|YP_001903645.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113056|gb|AAM41232.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|167733395|emb|CAP51596.1| Flagellar hook-associated protein 1 (HAP1) [Xanthomonas campestris
           pv. campestris]
          Length = 624

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 124/408 (30%), Gaps = 16/408 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKISD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDSLYSNTA--TNVAGLWSNFFDSASAL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I     +     D LDQRD L+ K+    G + ++++   M V+T+ G  L       
Sbjct: 180 GTIGNSIDNASA--DLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAA 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 + Y  T     +   G  VS +  S    G+I  LL+ R +V+   Q +L  +A
Sbjct: 238 KLTTVADPYQPTKLQVAMQTQGQNVSLSPSS--LGGQIGGLLEFRSNVLEPTQAELGRLA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  SF+       +     G    +          +                   ++ 
Sbjct: 296 VGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLGAVDGQNV 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                   W          +      +     + + V+ +        
Sbjct: 356 TLSFDAGSWKATRTDTGSTVPLTGTGTAADPLVVNGVSMVVGGAPANG 403



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/474 (10%), Positives = 117/474 (24%), Gaps = 46/474 (9%)

Query: 23  SIVRNIENADN-------------KNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLH 68
           +I  +I+NA                 Y     +       NV     ++         L 
Sbjct: 181 TIGNSIDNASADLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAAKLT 240

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
             +      +L  + +   + +S            + + R +            + +   
Sbjct: 241 TVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSN------------VLEPTQ 288

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
                +     +S         D    +     N+    +     N      TAS  +  
Sbjct: 289 AELGRLAVGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLG 348

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
               Q             ++      +     T  G+T+       +      +  +   
Sbjct: 349 AVDGQ------------NVTLSFDAGSWKATRTDTGSTVP------LTGTGTAADPLVVN 390

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
              + + G   + ++    P   +   L +  +            A   I +        
Sbjct: 391 GVSMVVGGAPANGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATIANLGTGKISD 450

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--SKKFLWNVK 366
               N     +            Q   +                             +  
Sbjct: 451 VKVTNAQNPALLTPSSVEFIDANQYTIDGTGPFAYTPGQTISANGWSFALDGAPKAGDTF 510

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +       +   ++     + D  A     VTL          +      ++      +
Sbjct: 511 GVGPMGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSVGSAARAANYAADAQE 570

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V+ +    S  +  GVNL EE + ++K++Q+Y  + ++I   D + Q +L  V+
Sbjct: 571 VINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTIFQAILGAVR 624


>gi|332525066|ref|ZP_08401246.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108355|gb|EGJ09579.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 432

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/483 (11%), Positives = 121/483 (25%), Gaps = 63/483 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR--- 56
            F +  +  N  S+    I  NI NA+           +           V  V      
Sbjct: 2   SFQQGLSGLNATSKSLDVIGNNIANANTYGAKVSRAEFSDMYATALNGAGVNNVGIGVTL 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            + ++      +    +A+        F  + + +S       +      + +   E Y 
Sbjct: 62  GAVSQQFTQGNISTTGNAMDMAINGAGFFQVTDGVSP------TVYTRNGQFKVDREGYI 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N  +  L       A+         A+ ++   A        +I               
Sbjct: 116 VNNEKLKLMGY---PADGTGTIQPGLAQPLKLPTAGIAPSATSKIELEFNL--------K 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           A    TA    A   +D  D      +  +        +  +  Y    +     V    
Sbjct: 165 ADSVVTAPAATATPQIDFTDKSTYNNATSVVAYDSKGQDVALSYYFQKESNDKWNVYVTA 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N + +N     +      ++    +    S  P   +                       
Sbjct: 225 NGQPVNVDAAGNPVKWQTLEFDNTTGRLASPDPADALA---------------------L 263

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            +       DP+ G   +   + +   +              +    QY           
Sbjct: 264 SITNDLIITDPVTGRETSRIVVPLNMSV-------------NVASATQYDQTFGVTNLTQ 310

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +           +     ++  Y +  +K      +A       L     N   W     
Sbjct: 311 NGYAAGQLTSIAIEADGIVLARYSNGQSKPAGQLELANFRNPQGLQPLGGNV--WASTYA 368

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    + + S+     I         ++L  EL  +I  ++ Y  + + I   D+++QTL
Sbjct: 369 SGDAVVGVPSEGNMGVIQAGALEESNIDLTGELVNMITAQRIYQANAQTIKTQDQVMQTL 428

Query: 476 LEG 478
           +  
Sbjct: 429 VNM 431


>gi|238764392|ref|ZP_04625342.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638]
 gi|238697418|gb|EEP90185.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638]
          Length = 437

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/477 (9%), Positives = 109/477 (22%), Gaps = 46/477 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTTTTTNRRLDLAISQNGFFRMQD------STGGIFYARNGQFKLDENRNIVNMQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    +      +             T 
Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQGMIPAKATT 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           S +   +     +++  + +   G++T     +        +  T F+++          
Sbjct: 151 SGNMVANLTSTHNIIPAETTSSAGVTTPTFDPDKPDTYSFVNNITTFDSLGNRHEINVFY 210

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                   N    D     S+   A    +  ++    +  +    N +           
Sbjct: 211 VKRSEDAVNGNSWDVYTRDSSAVPAQVAERRGSMRFDTNGALVETTNPVITPPATTPVET 270

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
               P                                    Q     S +    +     
Sbjct: 271 PTTVPFTLTIP---------MGIVNGAPAQDFALNVAGSKQQNTGTDSIVTQNQTGYAAG 321

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
            +    +     ++  Y +   +      +        L     N   W E   S +  L
Sbjct: 322 EFTGFQINNDGSVVGTYSNQQTQLLGQIVMVNFANPEGLSSEGNNV--WKETLSSGNAIL 379

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 380 GTAGSGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 436


>gi|121596117|ref|YP_988013.1| hypothetical protein Ajs_3830 [Acidovorax sp. JS42]
 gi|120608197|gb|ABM43937.1| protein of unknown function DUF1078 domain protein [Acidovorax sp.
           JS42]
          Length = 538

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/544 (9%), Positives = 121/544 (22%), Gaps = 79/544 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55
            F +  +  N +++    I  NI N++   +    T                 +   V  
Sbjct: 2   GFQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L    +++        F  L+          +         +       
Sbjct: 62  SAIAQQFNQGNLTVTGNSLDVAINGNGFFTLQ------MPDGSRAYTRAGNFKLDNVGNV 115

Query: 116 KNLSEDILGKTVIDNAEEVVQN-------FNTSAREVQKIRADADKEIELEISNLRRFLS 168
                  +    ID    +  +       F T+A    +          L+         
Sbjct: 116 VTNDGAQVMGYPIDPVTGLRTSSTAVPLTFPTTAPIPARQTTAIKTAFNLDARTPNAKGD 175

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQ----------------RDVLLQKISEIIGISTIVR 212
                      +T      + +  Q                   +  +++++      + 
Sbjct: 176 SSATPPVPETPRTTYGTSLNVYDSQGVATPLSFYFEKNGANTWDIYNQLNDLTTTPPTIP 235

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                VV+   G       P D       + T    S      G                
Sbjct: 236 PVAGRVVFDKAGAITASLEPSDPTKNGGTAKTDYPTSFKFHFYGPDAQGVYAIREATVSA 295

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL-- 330
            +     D             +  L      +D   GN      +  + G   +      
Sbjct: 296 SSPDAAWDFSYSDSPTNSVVASARLREDLITRDATTGNWTLPAPVPASRGTATVTPADLK 355

Query: 331 ------------------------------------CQGISETICVNPQYRSNPSFLRDG 354
                                                  ++  +    Q+ +  +     
Sbjct: 356 TAPAAAKQSFELALMVNPSPANPNSPTAPGSNPAPSEFPVTLDLNNVTQFGTKFAVSELS 415

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       N+     ++  Y +   +      +A       L     N   W+E  
Sbjct: 416 QDGYTSGELTGINVENNGMIMTRYSNGVTRAEGQVALASFRNTQGLAAVGGN--NWVETY 473

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +   +   F  +         V+L  EL  ++  +++Y  + + I   D+++ T
Sbjct: 474 ESGQPVMGAPTDGNFGALRAGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMST 533

Query: 475 LLEG 478
           L+  
Sbjct: 534 LVNL 537


>gi|49480337|ref|YP_035873.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331893|gb|AAT62539.1| flagellar hook protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 437

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 129/478 (26%), Gaps = 41/478 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N A    +    NI NA    Y ++  +      N TV +    +   
Sbjct: 1   MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGS--RGDGAY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + +        F             + S T    K+  ++E     L  D 
Sbjct: 59  AGTNPKSIGNGVKFSGTSTDF------------SDGSITLTSDKMETAIEGNGLFLVGDR 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V    +        S       +      ++     +        +          
Sbjct: 107 NAGNVEYTRKGSFSVSKDSYVTNTGGQYVLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGG 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + D              +S    +     N+  + V     TT      +++       
Sbjct: 167 IQTDKATIGGNLPRNQNALSHEFTVFDAEGNSLTLRVNIKQKTTKETVDGKEVENPVPGE 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           YT         +     S N+    P   +     ++   +   +   + + +  +    
Sbjct: 227 YT-------YTVSVRNDSKNEKEFKPVEGMTGEKNLKFDTLGNLKETDEAVQKDPVTGEI 279

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K                     +      G++  +     Y +  +      +     +
Sbjct: 280 TKGGS------------------VQIPFGSGLTLDLSGLTNYPTGKTLSTTEVTGRPAAI 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  +++    ++  Y D   K      VA    +  L++       ++    +    + 
Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNG--NYVATPSAGIPGIG 379

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +    ++  S   +  V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 380 VAGENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 437


>gi|157376216|ref|YP_001474816.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3]
 gi|157318590|gb|ABV37688.1| flagellar basal body FlaE domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 454

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 108/483 (22%), Gaps = 41/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +    A +   +   NI N ++  +                           T 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTGVGGGATT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++A+        F       S+ D             +    SY 
Sbjct: 62  SHVAQQFHQGSLQFTNNALDMAINGGGFFVTSSGFSSQDLS----YTRAGAFKVDSNSYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D          T  + V+        +    +               
Sbjct: 118 VDSQGNFLQAFEVDKDGNSTSVSLTETKPVRIPDTAGSPKKTENVG-------------I 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D      S  + +   +   + M  Y               
Sbjct: 165 QMNLNAGDGTKDPALFDPSDRDTYNNSTAVTMYDSLGEPHVMTTY------FVRPNNAAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N E         +   + I G VV+ +  ++             ++              
Sbjct: 219 NLESNWVAFYAVDGKQVDIAGPVVNYDTDTSGNGTVDG------NAPAQATLGNWKGSVI 272

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 S                    +        Q ++       QY S         
Sbjct: 273 KFNELGSHTTTDPATIITETLGNGGADVLGPGTDGSQALTIDFDNPTQYASAFEVTELTQ 332

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +A       L +       W     
Sbjct: 333 DGTTVGRLTNVEVGADGLINASYSNGATVALARVALARFANEQGLTQVGN--TSWKASLD 390

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 391 SGAALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 450

Query: 476 LEG 478
           L+ 
Sbjct: 451 LQI 453


>gi|327192294|gb|EGE59259.1| flagellar hook protein FlgE [Rhizobium etli CNPAF512]
          Length = 483

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/481 (11%), Positives = 117/481 (24%), Gaps = 52/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  +  + + +++  NI NA+   Y    T  +      +     S   
Sbjct: 54  MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGV 113

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +     +  + +             +    N +
Sbjct: 114 QTSVRQAISEQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNSA 173

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +       I    +     L+    V      
Sbjct: 174 GYTLMGYSYDSGVPAVVVNGFDGLVPVNVAQSGLSAIASTSAYFSGNLNSEATVVTDTTT 233

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++   +     Q+  L+   S    +          V   + G     T    +    
Sbjct: 234 LPSANTSSVTDDTQKMSLVAYDSLGATVQYDYYFTKTGVTTDASGAVTGSTWEVAVY--- 290

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N+   T  +         VS +  S    G++ +                         
Sbjct: 291 RNADAATRGTTSFPYSSDAVSVSTLSFDADGQLTSATD---------------------- 328

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                     +D    Q IS       Q  S+ S          
Sbjct: 329 -----------------------TDIVDPTTAQTISMDYSSFTQLASDFSATGS-ADGQA 364

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +   K     P+A + +   L   + N        RS   
Sbjct: 365 ASSVSSVSIDTDGVVSVSYANGTTKALYQIPLATVASPDNLTLLSGNVYT--ANGRSGVT 422

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I      +  V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 423 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 482

Query: 480 K 480
           +
Sbjct: 483 R 483


>gi|238751762|ref|ZP_04613250.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380]
 gi|238710033|gb|EEQ02263.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380]
          Length = 430

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 113/476 (23%), Gaps = 51/476 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKSSSVSFADMFAGSQAGMGVQVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTATTTNRRLDIAISQSGFFRMQD------STGGIYYARNGQFKLDENRNIINMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                 +   +   +     +       +    S   V+     F   
Sbjct: 116 LTGYPAT-GTPPTVKQGANPIALSIPQDIISAKATDSGKMVVNLTSTHKVIPATPAFDPE 174

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                    +         S +I +  +    + +     +   ++         +K   
Sbjct: 175 KPDTYSFVNNLTTYDSLGNSHVINVFYVKTAEDAVN---GNSWQVYTKDSSATLADKTKP 231

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +  T             +++    +      AL  + +   P     L     + + + S
Sbjct: 232 FDPT----------DPAAASLRGTMVFDTNGALKSVANGTNPASTTDLTMAIPMGVVNGS 281

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  +                                Q     S +    +      
Sbjct: 282 PAQSFKLDVTGS--------------------------KQQNTGTDSVVAQSQTGYAAGE 315

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     L+  Y +   +      +        L     N   W E   S S  L 
Sbjct: 316 FTGFQIGTDGALVGTYSNQQTQLLGQIVMVNFANPEGLSSAGDNV--WKETQTSGSPILG 373

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++     +  V+L  EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 374 IAGSGGFGTLTSGALESSNVDLSAELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 429


>gi|291613044|ref|YP_003523201.1| flagellar hook-associated protein FlgK [Sideroxydans lithotrophicus
           ES-1]
 gi|291583156|gb|ADE10814.1| flagellar hook-associated protein FlgK [Sideroxydans lithotrophicus
           ES-1]
          Length = 640

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 132/400 (33%), Gaps = 14/400 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           +++  A +  N A     +   NI NA+   Y R+  +               + V V T
Sbjct: 2   SIYGIAVSALNAAQAGLTTTSNNIANANTPGYSRQAIIQAGMLPQNTGSGYFGQGVNVTT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       +    +                 +      ++  T  +     ++ + 
Sbjct: 62  VVRRYDQFLGAQVLEAQTQSSNLNTQLGLAQQVSNLLGT--ASSGLTPAMQDFFTAVNAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +         +T+I +A+ +   F    + + +IR   + +I   ++ +  +  ++  +N
Sbjct: 120 ANAPQSVPARQTMISSAQSLADGFQAMNQNMNQIRDGLNGQISASVTQINSYAKQIAALN 179

Query: 175 DAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           D I    A+  +   +D LDQRD L+ ++S+ I +STI +++  M V+  +G +L     
Sbjct: 180 DKIVQLQANTPNQAPNDLLDQRDQLVNQLSQEIRVSTIKQSDGSMNVFIGNGQSLVLGNQ 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   ++   T+            S  Q S++  G +   +  R +++    N L  
Sbjct: 240 TTTLQTVTSTTDPTALEVAYLNGNGTTSRIQQSSLQGGNLGGFISFRQNILDPAINALGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L   F+++     + +   G+ +                  +       ++     
Sbjct: 300 IAMGLADKFNQQQQQGVDLKGALGVNMFTMATPSVTAATSNAGGAVITATVNSTSALTGN 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
           D   V     +NV N A    + +                
Sbjct: 360 DYSVVFDGTNYNVYNTATNSLVQSFTPAQLTAGQAVTGTG 399



 Score = 86.6 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/384 (8%), Positives = 92/384 (23%), Gaps = 13/384 (3%)

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
             +S          S      + + + LG+  +  A++  Q           +  +    
Sbjct: 270 QQSSLQGGNLGGFISFRQNILDPAINALGRIAMGLADKFNQQQQQGVDLKGALGVNMFTM 329

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
               ++          +          + +D     D  +  +   +    + +      
Sbjct: 330 ATPSVTAATSNAGGAVITATVNSTSALTGNDYSVVFDGTNYNVYNTATNSLVQSFTPAQL 389

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                 +      +                T      F       +   +A P      +
Sbjct: 390 TAGQAVTGTGITLQLTGGAAATSDTFLVRPTVNGASNFSLSFTDPTKIAAASPIRSNAPV 449

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
             +    +         +   L  + + + P+     N P  F   G    +       +
Sbjct: 450 SNLGTGTIGAA-----SVTGGLPLNANLQQPVTITFNNPPTTFNVTGTGTGNPVNVPYTA 504

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                   +                   +   ++          +S     +       N
Sbjct: 505 GAAITYNGW--------TTQISGAPSAGDTFTVSQNTSATTDGSNSLLMAALQTANTLAN 556

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +  +        +G +    +           +   ++ +     GVNL EE + L++ +
Sbjct: 557 STTSFQGAYGQLVGQVGTQTNQLTVTSKAQTSLLTSVTTAQQAVSGVNLDEEAANLLRYQ 616

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           Q+Y  + K +   + M  T+L   
Sbjct: 617 QAYQAAGKAMQIANTMFDTILNLK 640


>gi|319944135|ref|ZP_08018413.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599]
 gi|319742629|gb|EFV95038.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599]
          Length = 417

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 121/483 (25%), Gaps = 78/483 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVT------VVTQ 55
            F +  +  N A++   +I  N+ NA    +             +   V+          
Sbjct: 2   AFQQGLSGLNAAARHLDTIGHNVANASTVGFKASRAEFADVYATTVYGVSNVSPGIGTEV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L   ++++        F  + +   A             + +     Y 
Sbjct: 62  GAIAQQFSQGALTTTNNSLDLGINGGGFFRMSDNGGAIT------YTREGQFKLDKSGYI 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L    +D    V                                  +L + + 
Sbjct: 116 VNASGKRLTGYPVDKNGVVT----------------------------NGTAQDLKLDST 147

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I  K  +       +D R         +            + V+ S G      +    
Sbjct: 148 DIAPKQTTSAAVRVNVDARATTPANAFTLTDAK-TYDGGTSVSVFDSLGREHVMAMYFRK 206

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +       T +  P+       +  + +  P G +K                      
Sbjct: 207 TGDNSWDVHGTLDGEPL---NGGAAVGKLAFNPNGTLKG--------------------- 242

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                    D     + +    F        D      +S       Q+ +N +      
Sbjct: 243 -------ASDGNGDPTTSNVMTFDVSLNMGADAGGNHTVSVNFADTTQFGTNFTVAHQEQ 295

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           + +        ++     L+  Y +    +     +A       L     N   W E   
Sbjct: 296 NGNGSGKLAGFSVGRDGSLMARYTNGQTVSKGRVALANFTNPQGLQPLGGNQ--WGETAD 353

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +   S      I      +  V+L +EL  +I  ++ Y  + + +   D++LQT+
Sbjct: 354 SGAPLVGSPSTGTLGVIQSGALESSNVDLTQELVNMITAQRVYQANAQTVRTHDQLLQTI 413

Query: 476 LEG 478
           +  
Sbjct: 414 VNL 416


>gi|331269322|ref|YP_004395814.1| flagellar basal-body rod protein FlgG [Clostridium botulinum
           BKT015925]
 gi|329125872|gb|AEB75817.1| flagellar basal-body rod protein FlgG [Clostridium botulinum
           BKT015925]
          Length = 491

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/504 (8%), Positives = 112/504 (22%), Gaps = 43/504 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------------- 46
                +       +      NI N     +                              
Sbjct: 1   MYAGISGMKVNQTKLDVTGNNIANVSTTGFKSSRVRFKDMLSQNMGEAVGPGRNQGGVNG 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V      +  M   ++   S  +        +  + +     +         
Sbjct: 61  KQVGLGVQVAGI---DSVMSQGMMQPTSRNLDVAMDGTGYFIVAKGAL-PESNAGGIAVS 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            S    S  ++  N + D                +      + +I        EL I   
Sbjct: 117 ESDHTMSGGAFQVNYTRDGSFTLDHQGNLLTSDGYRVMGYAINEIDDKGKAVGELSIDYS 176

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
           +   +     +     K  +        D   V   KI++       +    +  +    
Sbjct: 177 KNGATSFVNADGKYGLKATNTIVPLRIPDSVHVKATKIAKDDASKVEMDFIGNGSMDKIT 236

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                +T       E   +  +    N    DG    +   +     K    ++   + +
Sbjct: 237 TKAKIDTEGTTFEGESNFNIKIK---NIKQDDGTFKKALLINGEQLLKEDGSVEDFKTTL 293

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                +L ++   L G            ++       +    +  K  +       +   
Sbjct: 294 -----ELGDIEGHLKGKNGWDKEPDATKKDALEKQAKEQALKIFGKNTKVNITEPVIPAG 348

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
              +                   ++     +     D           A       L + 
Sbjct: 349 EDESKFSWSFTLVAEGDKKLRSFSIEKDGLVKGVLDDGTVTALGQIATASFKNQEGLKKE 408

Query: 404 ARNSIGWLEKNRS-------DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
            +N       +          +          +  + +       V+L E+ + +I   +
Sbjct: 409 GKNLFSNTANSGVPTVRSGLGAPKNLDNGDG-YGEMLQGMLEMSNVDLAEQFTDMIVTTR 467

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           ++  S K+I   D++LQ ++   +
Sbjct: 468 AFQASGKMISTGDEILQDIINLKR 491


>gi|227876730|ref|ZP_03994839.1| possible flagellar hook-associated protein FlgK [Mobiluncus
           mulieris ATCC 35243]
 gi|269976257|ref|ZP_06183253.1| putative flagellar hook-associated protein FlgK [Mobiluncus
           mulieris 28-1]
 gi|227842627|gb|EEJ52827.1| possible flagellar hook-associated protein FlgK [Mobiluncus
           mulieris ATCC 35243]
 gi|269935586|gb|EEZ92124.1| putative flagellar hook-associated protein FlgK [Mobiluncus
           mulieris 28-1]
          Length = 1034

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 98/299 (32%), Gaps = 18/299 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +  +R       D  L   +      + + S     E  S D+    S ++ + +
Sbjct: 63  GGGVEITGERRLGDFFLDAKLRMETGRAASTKEITSGWKNVES-SMDELGKKSLSNAMRE 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + +        T I NA  +V    T    +  +  +   E++  +++L   
Sbjct: 122 FYKSWGDVNNSSDNLGARATAIGNARALVDQIKTGYTHINDLWKNGRAELDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +  +  +N+ I+  TA   + +  +D+RD L   ISE+ G +     +        + + 
Sbjct: 182 MDSVLALNERIRKGTAMHANVNHLIDERDKLALHISELTGATVRKGYSVYTAENAPNASM 241

Query: 227 LFE--TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           + +             NS    +  N   +DG        +A  +   KA  +++D+ V
Sbjct: 242 VGKGYEDGSIEIMLAGNSMVGKNYVNHFKVDGSRDMPGIDAAPREVYQKAENELQDNKV 300



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 361  FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                + +       +           +       +   TL E+ ++ +  +  + S + D
Sbjct: 916  LGVAIDDPMKIAAGVYKNGVYDGSVALRIGNQQDSATSTLNEWGKSVV-DVGVHASGARD 974

Query: 421  LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  ++       +   +   V++ EE+  LI+ + +Y  + ++    + ML+TL+   +
Sbjct: 975  SYNLAEQTRRIADQQQKSQSSVDMNEEVMNLIRGQHAYAGAARITSTVNSMLETLINLGR 1034


>gi|293115683|ref|ZP_05792615.2| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876]
 gi|292808788|gb|EFF67993.1| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876]
          Length = 440

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 127/478 (26%), Gaps = 38/478 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++               +   I  NI N +   +  +    +         TQ +   N 
Sbjct: 1   MMRALYSGVAGLKTHQTKMDVIGNNIANVNTVGFKSQSVTFSDVFYQ---TTQNASGANA 57

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +   ++  IG    + S              +N     I+     + + +       
Sbjct: 58  ETGMGGTNAKQIGLGSTVSSITTKVSESGGSQSTSNPFDLMINGDSMFIVNNAGTNYFTK 117

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G   +D+A  +V +   + +  +         ++  +++L  + +E             
Sbjct: 118 AGNFTVDSAGTLVTSQGYAVQGWKANEEGV--IMKGPVTSLNLYGAENKYAAPEATENCT 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              + +   D  +                     M +   D       V   +  +  + 
Sbjct: 176 ISGNINKEDDGFES---------------GVGRSMNITFYDTLGYEYQVTVKVTQDPDDD 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           Y     +  +   G  V     +      +   + +    V        +    L  +  
Sbjct: 221 YKYNLVATGLTCGGKAVDFGADAQTKLEGLLKDVTLTFDKVTGELADPADGKVTLNTTTL 280

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D +A +                          T       R +   L   G+      
Sbjct: 281 GIDSLAKDVNLDFSKMT--------------CLGTDTSFTPARGDKEGL---GAGRLVGT 323

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +  ++     ++ +Y +  +K      VA       L +   N       + +      
Sbjct: 324 MSGVSIQKDGIIVAYYDNGDSKIIAQIAVANFKNLSGLEKVGDNLFAETLNSGNFDGIGD 383

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++    + S        V+L  E + +I  ++ Y  ++++I  +D +L+ L+   +
Sbjct: 384 DITEDG-GYFSPGVLEMSNVDLAAEFTDMITTQRGYQANSRIITVSDTLLEELINLKR 440


>gi|114799551|ref|YP_758981.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444]
 gi|114739725|gb|ABI77850.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444]
          Length = 434

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/489 (12%), Positives = 120/489 (24%), Gaps = 64/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53
           MS+ +  N      +    + A+I  NI N+    Y R     +               V
Sbjct: 1   MSISSSLNAGVMGLSVNGTRLATISDNIANSGTYGYKRSAVDFSSMVLQQKTSAYAAGGV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD--HYNNSPTHYISKLRDSL 111
              +         L    SA       +    + ++    +     N             
Sbjct: 61  RVDTYKDIAATGSLIRTGSATDVAISGRGLLPVTDLDGTTNLASNRNMMLTPTGSFFADE 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
             Y +  S   L     D++  V      S   +          + +  S      +   
Sbjct: 121 NGYLRTQSGLFLLGWAADSSGGVGNVSRNSGANL--------VPVNISTSQFNATPTSSI 172

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   I     +     D           +     ++                     TV
Sbjct: 173 DLGINIPADATTAGGPGDPYMLPVEYFDNLGRAQTVT----------------FQFTPTV 216

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P   +  + N     S  +P+   G +  +   S    G+I +      +       ++ 
Sbjct: 217 PAAGSSNEWNVEIFDSAGDPLTSVGDLALTFNDSPTAGGRIASATAANGATYDPATGRVS 276

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                                                ++  G         Q  ++ +  
Sbjct: 277 LTLD-----------------------------HGPVEVFIGRPNDSAGITQLAASFAPT 307

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               + S         +     L   Y   F +     PV  +     L     +S  + 
Sbjct: 308 AVTKNGSPIGDLQSIEIDEQGFLQAIYDKGFRRTLYQIPVGDVPNMNGLRAL--DSQAYS 365

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             N S +  L          IS         ++  EL+ LI+ +++Y+ + K++   D+M
Sbjct: 366 VSNSSGNLYLWDAGSGPVGGISGYSLMESTTDIASELTDLIETQRAYSSNAKIVQTVDEM 425

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 426 LQETTNLKR 434


>gi|260774944|ref|ZP_05883845.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609199|gb|EEX35357.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 624

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/448 (12%), Positives = 152/448 (33%), Gaps = 22/448 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNLGSQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGANMPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R          ++  ++    +   ++   +   M +           +++  D+++S
Sbjct: 63  KVRRSWDQFAVNEMNISTTNYAHKVDDEANLEMLSNMLSSVASKK-IPENLNEWFDAVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ A+ + QN N     +++     +K+++L I  + +   E+  +
Sbjct: 122 LADSPNDVGARKVVLEKADLITQNLNDFHETIRRQSDVTNKKLDLGIERVNQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
           +  +          +D +DQ + L+ ++SE   ++   R N     V+  +G TL     
Sbjct: 182 HRLMMRTP---GPHNDLMDQHEKLIAELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++ Y    +     I+G  + +     +  GK+ A+L +RD  +P   ++L +
Sbjct: 239 ASQL-KMIDGYPDVHQRRLAMIEGKGIKAITTKDI-DGKLGAMLTMRDEKIPYLMDELGK 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       +       +     G  +   +        + ++ +        ++     
Sbjct: 297 MATAFSYDVNALQSQGLDLRGNIGGLVFTDVNSEVVAKSRVVTSSNS-----TADLEVYI 351

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +  +      ++++   G   +     D      + + ++     + +    +     L 
Sbjct: 352 EDTNKLVGGQYSLQFNGGDYYITRPNGDMSIVPVVGNSISLDGIRIDINNGLQAGERVLI 411

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +   +       +    + I+       
Sbjct: 412 RPTRNGAAQMKMATNDPSAIAAQSYEAS 439



 Score = 96.3 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 99/334 (29%), Gaps = 3/334 (0%)

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
           +  +  K       ++    S+   +   I     +  ++      R V     +  + +
Sbjct: 290 LMDELGKMATAFSYDVNALQSQGLDLRGNIGGLVFTDVNSEVVAKSRVVTSSNSTADLEV 349

Query: 208 ---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
               T         +  + G         D++   +   +++ +   I I+  + +  + 
Sbjct: 350 YIEDTNKLVGGQYSLQFNGGDYYITRPNGDMSIVPVVGNSISLDGIRIDINNGLQAGERV 409

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
              P     A +++  +       Q  E +       +              + I+   K
Sbjct: 410 LIRPTRNGAAQMKMATNDPSAIAAQSYEASTTFAQGSATFSIDTAGDLREFEVIISPDGK 469

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                  +G               +       +S   + N K  A          +    
Sbjct: 470 QFAVTDTKGKILLQPQAYPPTGPVTVQGTTFELSAGAIANDKFTANLVPSEGDNGNLLKM 529

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
             I       +   T+L+   N    +    S +  L   S++      E  ++  GVNL
Sbjct: 530 QNIQTNKHLNDGESTVLDIYHNLNTDVGLQMSTASRLTDVSRLEKEAAQERVASISGVNL 589

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 590 DEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 623


>gi|320015457|gb|ADV99028.1| flagellar hook-associated protein 1 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 554

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/555 (12%), Positives = 145/555 (26%), Gaps = 80/555 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  N A    +++  NI N     Y R++T+   +             V
Sbjct: 1   MS-NSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV     E        L A  +            +  + + ++   +N+ +  +     +
Sbjct: 60  TVTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSN--ASNNLSTTMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEV-------------------------VQNFNTSAREV 145
           L++   N  +D   KTV+  AE +                             N  A ++
Sbjct: 118 LQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQI 177

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
            K+     +      S     L +   +   +    A      D           +S + 
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQ 237

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--------------- 250
           G +             +  T  ++    +      +  T  S                  
Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQ 297

Query: 251 ------------------PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                                I+G         A P     A  Q   S+   +++    
Sbjct: 298 LGQLALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKV 357

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NP 348
            A      F   D       +   +    G+    +   +     I ++         + 
Sbjct: 358 KASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQVKDK 417

Query: 349 SFLRDGGSVSKKFLWNVKN-----LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++   +V+      + +      AG  D       +            +    TL   
Sbjct: 418 FTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGA 477

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  +    + +         +   ++    +  GVNL EE   L + +Q Y  + +
Sbjct: 478 YAGLVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQ 537

Query: 464 LIMFTDKMLQTLLEG 478
           ++     +   LL  
Sbjct: 538 VLQAASTLFNALLSI 552


>gi|315497293|ref|YP_004086097.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48]
 gi|315415305|gb|ADU11946.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48]
          Length = 459

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 141/484 (29%), Gaps = 29/484 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+ +      +  +  S   A+I  NI N +   Y    T    +  +    T  S   
Sbjct: 1   MSISSAMLSGVSALSANSTALAAISNNIANVNTTAYKSVSTSFAANVSSSGSSTYSSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS----ADDHYNNSPTHYISKLRDSLESYSK 116
           +    +    + A+                       D    S          + E Y  
Sbjct: 61  SASTALSITEAGALQTTTSSLDLAIDGSGFFVVSEGADGSGGSYYTRDGSFSVNDEGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L     D++  V    + S     KI   +D        +L   L+  T     
Sbjct: 121 NSSGYYLQGWQADSSGNVTAASSVSDLSAIKIPTSSDTPTATTSISLAANLNSATEAYAG 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               +     A+   D+   +       I +S  +   + + +      T  E      +
Sbjct: 181 EYDISTGLSMANYDEDEETGVEPDFEIGISVSDSLGKEHTLTLSVLKSETTNEWTAELWS 240

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +    Y          I    ++ N+   + +  + A     D                
Sbjct: 241 DDVTGGYGSEGNI----IKSGTITFNEDGTLNEDSLAAFFGAEDLS-------------- 282

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  K  IA +S+    L            L     +T     QY +          
Sbjct: 283 -----QIKIDIAASSDETGALRWTSETGAAAQSLSLSFDDTQGGLTQYATTSEVKSIKAD 337

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     +   +A    +   Y D  ++     PVA       L   + N       + S
Sbjct: 338 GTVFSDLSDVTIADDGTVNAIYEDGTSRVLAQIPVATFVNANGLTAKSGNVYAL--SSES 395

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            S+ L          ++ S      V+L  E + LI ++++Y+ ++K+I  +D+M+QT++
Sbjct: 396 GSYTLRTPGSGGAGLLASSSLEASTVDLSSEFTSLITIQRAYSAASKIITTSDEMMQTVI 455

Query: 477 EGVK 480
           E  +
Sbjct: 456 ESKR 459


>gi|86146149|ref|ZP_01064475.1| flagellar hook-associated protein [Vibrio sp. MED222]
 gi|85836096|gb|EAQ54228.1| flagellar hook-associated protein [Vibrio sp. MED222]
          Length = 626

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 137/401 (34%), Gaps = 19/401 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +                 V V 
Sbjct: 3   SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVVQGVNDPRQYGGQTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++    +   ++   +   M +           +++  DS+++
Sbjct: 63  NVRRSWDQFAVKELNLSTTNAANKADTEANLDMLSSMLSSVVSKK-IPENLNEWFDSVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K VI+ A  + +  N     V++    A+K++++ I  + +   E+  +
Sbjct: 122 LADTPNDVGTRKVVIEKAGLLSKTLNEFHETVRQQSDSANKKLDMGIERVNQIAYEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR-NNNDMVVYTSDGTTLFETVP 232
              +          +D  DQ + L+ ++S    ++   R NN    V+  +G TL     
Sbjct: 182 QRLMVRTP---GPHNDLQDQHEQLVNELSGYTKVTVTPRANNEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++      +     ++G  + +   +    G+I A+L +RD  +P   ++L  
Sbjct: 239 ASQL-KMIDGVPDAHQRRLAIVEGKSLKA-ITNRDIDGQIGAMLDMRDEHIPAVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE--TICVNPQYRSNPSF 350
           +A       +       +     G  +   +        +  +   +      Y  + S 
Sbjct: 297 LATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKADVAVYIDDTSA 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
           L+ G    K    +   +    + +    +S    F  D +
Sbjct: 357 LKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGM 397



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 111/399 (27%), Gaps = 6/399 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I  + D+ +     +    L      + +  +          
Sbjct: 227 IGNGHTLVSGTEASQLKMIDGVPDAHQRRLAIVEGKSLKAITNRDIDGQIGAMLDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQK 200
           +  +  +  +        +    S+   +N  +     +  ++      R          
Sbjct: 287 IPAVMDELGRLATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKAD 346

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDGVVV 259
           ++  I  ++ ++     + Y      + +     +     ++      +   + +     
Sbjct: 347 VAVYIDDTSALKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGMRVEVRNPPE 406

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +    P     A +Q+          Q  E +       +    +A        + +
Sbjct: 407 LGEKLLLRPTRNFAAQIQMETKDPKDIAAQSYEASTTFAKGTAGFKILAAGQLREFEVIV 466

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           +   +       +G           +   +       ++   + N K  A          
Sbjct: 467 SPKGEQFAVTDPKGNILMQPQPYPPQGPVTINGTTFELTPGAVANDKFTANLVPSEGDNG 526

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +      +       +   T+L+   N         S ++ L   +++      E  ++ 
Sbjct: 527 NLRKLQDLQTGKVLDDGESTILDLYHNLNTNTGLKSSTANRLSDIARLEKESAQERIASV 586

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 587 SGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625


>gi|145298491|ref|YP_001141332.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851263|gb|ABO89584.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 446

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/483 (11%), Positives = 125/483 (25%), Gaps = 49/483 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +       NI N +   +            N             V  
Sbjct: 2   SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +         L   ++A+        F    + ++  D             + +  SY 
Sbjct: 62  GAVAHQFHQGALQFTNNALDLAIQGNGFFVTSDGLTNLDRT----YTRAGAFKLNENSYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L    I+           + + +Q      + ++   +             + 
Sbjct: 118 VNNQGHYLQGYEINTDGTPKAVSINATKPIQVPDRAGEPKMTELVE-----------ASF 166

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +  ++ +K       D  +      S  + I   +   + +  Y          V  + 
Sbjct: 167 NLSIESKTKPTDPAAFDPTNSATFAHSTSVTIYDSLGAPHVITKYF---------VRHED 217

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                   T  + S  ++     +    G+  P   I   +Q+  +        L     
Sbjct: 218 PVTPGTPMTPGTWSMYMYEGDKPIDIASGAPSPGPGIPTGVQMTFTSGGKLDPALTI--- 274

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                     P          L  A GI +      Q +   +    QY S  +  +   
Sbjct: 275 ----------PAPPAPIKTVTLGTAAGIINNGADPTQAVEIRLSDVTQYNSPFNVTKLTQ 324

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y ++         +A    +  L +       W +   
Sbjct: 325 DGATVGNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGD--TSWRQSLL 382

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +      I  S      V+L  +L  LI  ++++  +++ +     + QT+
Sbjct: 383 SGDALPGTPNSGTLGSIKSSAVEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 442

Query: 476 LEG 478
           L+ 
Sbjct: 443 LQI 445


>gi|218289685|ref|ZP_03493893.1| flagellar hook-associated protein FlgK [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240142|gb|EED07326.1| flagellar hook-associated protein FlgK [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 487

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/506 (12%), Positives = 157/506 (31%), Gaps = 52/506 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
             +      +      +  + +  NI+NA+   Y +                        
Sbjct: 5   TFSPLYIGLSGLQAMQEAESVVGNNIDNANTPGYAQESVNLVEGHPYPPVPGDGPMIGGQ 64

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
             + V+V +   ++   +D+    + S         S     + + + +  +N     + 
Sbjct: 65  YGQGVSVQSVTRQDSWFYDRQDWQNQSTYQMYSTYSSILTQVQGILS-EPSSNGIQSALD 123

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   + ++ S + S     + VI   + + Q  NT   ++Q ++++   +I  +   L +
Sbjct: 124 QFFSAWQTLSTDPSNTAARQAVITQGQVLAQTANTVTSQLQTLQSNVLSQINDQFQELEQ 183

Query: 166 FLSELTVVNDAIKFKTASK-----------HDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           +  EL+ V   I   + S             + ++ LDQ+  ++ ++S++  ++     +
Sbjct: 184 YAQELSAVQAQIAAISQSNVGAGGASSSAVENPNELLDQQAAIIDEMSQLANLTLSQNQD 243

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
             + V    G +    +P +   +   +             G    +   S+V  G   A
Sbjct: 244 GTISVSIGPGGSSGTVIPLNALTQASVTEGSNGVLVLSVGSGSNTQTYSLSSVVSGGQIA 303

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                 + +    N L+     L    +         +  P                   
Sbjct: 304 GNAQGFTELTGLLNNLNAFTSQLATQINSALGGQTFFDTSPFGVDVKMT----------- 352

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                       + +     G       +   +     +++N    + +  +I       
Sbjct: 353 ------------SATLALGPGGPPGSSTYVAGDNTYAVNVVNLQTQAQSITWIDGSGNSQ 400

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           +   T  +   + +  +    S        +  +    S+   +  GV++ E+ S++I  
Sbjct: 401 SATGTFDQLLASVVSQVGMTASGVAAGEKTADALLQQSSQLRQSISGVSIDEQASYMIAF 460

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +Y  + K I     ML  LL  V+
Sbjct: 461 QNAYAAAAKYIATFQTMLNALLNMVQ 486


>gi|304321120|ref|YP_003854763.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503]
 gi|303300022|gb|ADM09621.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503]
          Length = 446

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/489 (12%), Positives = 127/489 (25%), Gaps = 52/489 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MS+ +  N         + + A+I  NI N++   Y R             P   +    
Sbjct: 1   MSISSSLNAGVAGLATNAVKLAAIADNISNSETIGYKRAVAEFQSLVIDSGPNAYSAGGV 60

Query: 56  RS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDSL 111
           R+           L    +A       +    +     A                     
Sbjct: 61  RATPYIDVDDQGSLIGTGNATDLAIAGRGLLPVTNQDGAQAVTAERQLLLTATGSFTPDE 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + Y +  S   L     D+  ++      S   ++ +R +          N+        
Sbjct: 121 DGYLRTTSGLFLLGFPADSNGDIGTVSRQSTESLEPVRVNVSNFTATPTENV-------- 172

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   +              +              +         +    ++  T     
Sbjct: 173 GLGINLPAAATEAGATTGAYEITTEYFDNFGRAQVLRVEFTPQPPVSGAPTNNWTAEIFD 232

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
               +   + ++ VT   +P+   G + S N  SA           + DS        ++
Sbjct: 233 NASGSEVSIGTFDVTFRDDPV-NGGAIESINASSATDPTTSITTTGVYDSTTGTLPVTVE 291

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +V I      D                                     Q  ++ S  
Sbjct: 292 SGTQVNIFIGRPNDNAGL--------------------------------TQLAADFSPY 319

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                 ++        + G  +L   +   F +     PVA +     L   A N+  + 
Sbjct: 320 SLTKDGAEIGNLLDFEVDGQGNLDAVFDTGFRRTLYKIPVADVPNLNGLE--AANASAYK 377

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          ++        V++  EL+ LI+ +++Y+ + K+I   D++
Sbjct: 378 VSQSSGDLYLWDAGDGPTGEMAGFSLMESTVDVANELTQLIQTQRAYSSNAKIIQTVDEI 437

Query: 472 LQTLLEGVK 480
           LQ     V+
Sbjct: 438 LQETNSLVR 446


>gi|311992301|gb|ADQ26724.1| flagellar hook protein [Aeromonas hydrophila]
          Length = 443

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/483 (11%), Positives = 128/483 (26%), Gaps = 51/483 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +       NI N +   +            N             V  
Sbjct: 1   SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L   ++A+        F    + ++  D             + +  SY 
Sbjct: 61  GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSDGLTNLDRT----FTRAGAFKLNENSYM 116

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N   + L    I+           + + +Q      + ++   +             + 
Sbjct: 117 VNNQGNYLQGYEINTDGTPKAVSINATKPIQIPDRAGEPKMTELVE-----------ASF 165

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +  ++ +K  +    D  +      S  + I   +   + +  Y          V  + 
Sbjct: 166 NLSIESKTKPTSPAAFDPTNSATFAHSTSVTIYDSLGAPHVITKYF---------VRHED 216

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                   T  + S  ++     +    GS  P   I   +++  +        L     
Sbjct: 217 PAAPGTPLTPGTWSMYMYEGNKPIDIAGGSPSPAAGIPTGVKMTFTSGGKLDPTL----- 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                      +  +      L    GI +      Q +   +    QY S  +  +   
Sbjct: 272 ----------TVPVDPIKTVALGTTAGIINNGADPTQTLEIRLGDVTQYSSPFNVTKLTQ 321

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y ++         +A    +  L +       W +   
Sbjct: 322 DGATVGNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGD--TSWRQSLL 379

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +      I  S      V+L  +L  LI  ++++  +++ +     + QT+
Sbjct: 380 SGDALPGTPNSGTLGSIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 439

Query: 476 LEG 478
           L+ 
Sbjct: 440 LQI 442


>gi|297584044|ref|YP_003699824.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10]
 gi|297142501|gb|ADH99258.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10]
          Length = 424

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 117/478 (24%), Gaps = 54/478 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++          NN   +   I  NI N +   + +                      ++
Sbjct: 1   MIRSLYSGIGGMNNFQTKLDVIGNNISNVNTFGFKKGRVTF----------------NDL 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + L   SS   Q+         +  +       ++     S      +       +  
Sbjct: 45  VSQQLAGASSP--QEGERGGTNPRQVGLGGSTASIDTINTQGSLQSTGRDLDMAISGDGF 102

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                                    + AD  +     + +         V +  I     
Sbjct: 103 FQVADGGQNFYTRAGNFYLDENGMLVNADGLRLQGYGVGDDGAIDEAAGVGDLFIPAGEQ 162

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +A   +D R  L                     +    G      +      E    
Sbjct: 163 VDPEATSQVDLRGNLN------ADSEIGEERTVRFFITDPLGGEQEIRLLMTKTAENEWD 216

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           Y++    N I    ++    QG     G    + + R +      + L+ +   L     
Sbjct: 217 YSLEYWDNDIEDWDILPDIGQGFFDFSGTEDGVSRGRMN-----LDNLELIVEDLGFIGG 271

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          ++  +    Q+ S  +   +  + S    
Sbjct: 272 PW-----------------------EGHEGSLNLNLSNVTQFSSRSTVEVESRNGSSDGT 308

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                ++   ++   + +   +      +   N    L +   N       N S    + 
Sbjct: 309 LESYTVSETGEINGIFSNGEVRLLGQVALVNFNNPSGLSKAGSNLFEV--SNNSGEPQVG 366

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +        +  +      V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 367 LAGIGGRGSLVGATLEMSNVDLSEEFAEMIVSQRGFQANTRMITTSDEILQELINLKR 424


>gi|120598238|ref|YP_962812.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1]
 gi|120558331|gb|ABM24258.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1]
          Length = 641

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 125/439 (28%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   + S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQ--IGKMVPQSLNSLFAGVNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  L  + + +A++V  + N     +       + +I      +     EL  +N
Sbjct: 122 ADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               K              I    V+++   +   G++ AL + RD  +    ++LD++A
Sbjct: 239 TMDTKTGDPFPNELQLTSSIGSQSVAADP--SKLGGQLGALFEYRDQTLIPASHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    L +             SN +     
Sbjct: 297 LGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGY---------SNNTGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +N +        +        
Sbjct: 348 GVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIDIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S    +   +    N I+
Sbjct: 408 ASGDRFIIRPTAGAANGIT 426



 Score = 98.2 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 99/364 (27%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +       +   A  +  NFN   ++   +       I  +I++    L  +   ++ 
Sbjct: 282 DQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T   +     L          +              +   T +G+TL       I+
Sbjct: 342 TGNATLGVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +           G           PKG   A  +I          Q+      
Sbjct: 402 IKAGAMASGDRFIIRPTA-GAANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQIT 460

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +     +  +  +         +  D       +      P   +         +
Sbjct: 461 NRSAANFPVTGSELTIQLDTTAAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDST 520

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +         TL +   N+   +     
Sbjct: 521 AAAS---NDRFTFDLSFAEGDNSNAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ ++        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 TSVR 641


>gi|15642190|ref|NP_231822.1| flagellar hook-associated protein FlgK [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121726550|ref|ZP_01679799.1| flagellar hook-associated protein FlgK [Vibrio cholerae V52]
 gi|147675062|ref|YP_001217708.1| flagellar hook-associated protein FlgK [Vibrio cholerae O395]
 gi|153817114|ref|ZP_01969781.1| flagellar hook-associated protein FlgK [Vibrio cholerae NCTC 8457]
 gi|153820887|ref|ZP_01973554.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33]
 gi|227082315|ref|YP_002810866.1| flagellar hook-associated protein FlgM [Vibrio cholerae M66-2]
 gi|229507732|ref|ZP_04397237.1| flagellar hook-associated protein FlgK [Vibrio cholerae BX 330286]
 gi|229512073|ref|ZP_04401552.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33]
 gi|229519209|ref|ZP_04408652.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC9]
 gi|229607236|ref|YP_002877884.1| flagellar hook-associated protein FlgK [Vibrio cholerae MJ-1236]
 gi|254849320|ref|ZP_05238670.1| flagellar hook-associated protein FlgK [Vibrio cholerae MO10]
 gi|255747110|ref|ZP_05421055.1| flagellar hook-associated protein FlgK [Vibrio cholera CIRS 101]
 gi|262167783|ref|ZP_06035485.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC27]
 gi|298500431|ref|ZP_07010236.1| flagellar hook-associated protein FlgK [Vibrio cholerae MAK 757]
 gi|9656746|gb|AAF95336.1| flagellar hook-associated protein FlgM [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631003|gb|EAX63382.1| flagellar hook-associated protein FlgK [Vibrio cholerae V52]
 gi|126512382|gb|EAZ74976.1| flagellar hook-associated protein FlgK [Vibrio cholerae NCTC 8457]
 gi|126521679|gb|EAZ78902.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33]
 gi|146316945|gb|ABQ21484.1| flagellar hook-associated protein FlgK [Vibrio cholerae O395]
 gi|227010203|gb|ACP06415.1| flagellar hook-associated protein FlgM [Vibrio cholerae M66-2]
 gi|227014087|gb|ACP10297.1| flagellar hook-associated protein FlgM [Vibrio cholerae O395]
 gi|229343898|gb|EEO08873.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC9]
 gi|229352038|gb|EEO16979.1| flagellar hook-associated protein FlgK [Vibrio cholerae B33]
 gi|229355237|gb|EEO20158.1| flagellar hook-associated protein FlgK [Vibrio cholerae BX 330286]
 gi|229369891|gb|ACQ60314.1| flagellar hook-associated protein FlgK [Vibrio cholerae MJ-1236]
 gi|254845025|gb|EET23439.1| flagellar hook-associated protein FlgK [Vibrio cholerae MO10]
 gi|255735512|gb|EET90912.1| flagellar hook-associated protein FlgK [Vibrio cholera CIRS 101]
 gi|262023848|gb|EEY42547.1| flagellar hook-associated protein FlgK [Vibrio cholerae RC27]
 gi|297541124|gb|EFH77178.1| flagellar hook-associated protein FlgK [Vibrio cholerae MAK 757]
          Length = 624

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 121/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ ++ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.2 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|152990377|ref|YP_001356099.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp.
           SB155-2]
 gi|151422238|dbj|BAF69742.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp.
           SB155-2]
          Length = 533

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/538 (10%), Positives = 122/538 (22%), Gaps = 65/538 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +L  F    +  N        I  NI N +   + +     +    +             
Sbjct: 1   MLQSFYTGNSGLNANKTWLGVISDNIANVNTNGFKQERVNFSDLVASSLTTYSSSGAPRN 60

Query: 50  ---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                        K+         +  +      + F      M  +   + +       
Sbjct: 61  KEIGGGAFVAGTIKDFSQGSFKNTNQPLSLALDGEGFF-----MVKNPSADLTYYTRAGD 115

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            R        N +   L   ++D    +     +          + DK      +NL   
Sbjct: 116 FRVDANGDVINPAGLKLQGWMLDETGNIAGAMGSINIPNNLDPKNTDKVAFENPANLDAG 175

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLL--------QKISEIIGISTIVRNNNDMV 218
           +  +T   D     T    +     D                I+     + +        
Sbjct: 176 VDAITKTFDPSDPTTYHYVNTITTYDSLGTSHVLKHYFIKTDINTWRVFTQLDDRAVTYN 235

Query: 219 VYTSDGTTL--------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             T++   L              + + P   +     + T     +   I  +  +    
Sbjct: 236 DGTNEYAALELKFNGKGELTSAQYISQPATQSEAASEAATDDGIFSVTNIPVLPGTIYIT 295

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                  +        ++V I   ++        G  +        +             
Sbjct: 296 QDQNGNSVTWNDDGSGNIVDIQTGEIKGTISYDDGKITIIGAAGDGNTTGTLTVNYKDFS 355

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D        +         Y  N S   + G+       + K L         Y      
Sbjct: 356 DTTTANVTDLGAIKTSTINYSDNTSRFLNNGATDTAITEDFKKLTQLDSEFIFYAQQNGA 415

Query: 385 NFIFDPVAGINTNVTLLEYARNS----IGWLEKNR------------------SDSHDLH 422
           +        +  +  +     N     +  L                        +    
Sbjct: 416 SKGDLMSISVTEDGIIKGTYTNGQVKDVARLAVATFKDKEILVRKGDNLYLPNQQTFTPI 475

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    V + I         V++ +E   LI  +++Y  + K I  +D++LQT ++  +
Sbjct: 476 IVPGGVISKIRSGMLEMSNVDISQEFINLITAQRAYQANAKTITTSDQILQTTMDIKR 533


>gi|22126384|ref|NP_669807.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM 10]
 gi|45441403|ref|NP_992942.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596017|ref|YP_070208.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           IP 32953]
 gi|108807179|ref|YP_651095.1| flagellar hook-associated protein FlgK [Yersinia pestis Antiqua]
 gi|108812477|ref|YP_648244.1| flagellar hook-associated protein FlgK [Yersinia pestis Nepal516]
 gi|145598604|ref|YP_001162680.1| flagellar hook-associated protein FlgK [Yersinia pestis Pestoides
           F]
 gi|149366245|ref|ZP_01888280.1| flagellar hook-associated protein 1 [Yersinia pestis CA88-4125]
 gi|153948415|ref|YP_001401283.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421752|ref|YP_001606478.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola]
 gi|165925892|ref|ZP_02221724.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938764|ref|ZP_02227319.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010871|ref|ZP_02231769.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210949|ref|ZP_02236984.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401050|ref|ZP_02306553.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420208|ref|ZP_02311961.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425863|ref|ZP_02317616.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467496|ref|ZP_02332200.1| flagellar hook-associated protein FlgK [Yersinia pestis FV-1]
 gi|186895120|ref|YP_001872232.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928928|ref|YP_002346803.1| flagellar hook-associated protein FlgK [Yersinia pestis CO92]
 gi|229896251|ref|ZP_04511421.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides A]
 gi|229897188|ref|ZP_04512344.1| flagellar hook-associated protein 1 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897915|ref|ZP_04513066.1| flagellar hook-associated protein 1 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902854|ref|ZP_04517971.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516]
 gi|270486639|ref|ZP_06203713.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27]
 gi|294504024|ref|YP_003568086.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|21959370|gb|AAM86058.1|AE013853_6 flagellar biosynthesis protein, hook-filament junction protein 1
           [Yersinia pestis KIM 10]
 gi|45436263|gb|AAS61819.1| flagellar hook-associated protein 1 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589299|emb|CAH20920.1| flagellar hook-associated protein 1 [Yersinia pseudotuberculosis IP
           32953]
 gi|108776125|gb|ABG18644.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516]
 gi|108779092|gb|ABG13150.1| flagellar hook-associated protein 1 [Yersinia pestis Antiqua]
 gi|115347539|emb|CAL20448.1| flagellar hook-associated protein 1 [Yersinia pestis CO92]
 gi|145210300|gb|ABP39707.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides F]
 gi|149292658|gb|EDM42732.1| flagellar hook-associated protein 1 [Yersinia pestis CA88-4125]
 gi|152959910|gb|ABS47371.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354567|gb|ABX88515.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola]
 gi|165913378|gb|EDR32000.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922096|gb|EDR39273.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990215|gb|EDR42516.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166208129|gb|EDR52609.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961903|gb|EDR57924.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049439|gb|EDR60847.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055262|gb|EDR65059.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186698146|gb|ACC88775.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680301|gb|EEO76400.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516]
 gi|229688956|gb|EEO81021.1| flagellar hook-associated protein 1 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693525|gb|EEO83574.1| flagellar hook-associated protein 1 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701174|gb|EEO89203.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides A]
 gi|262361790|gb|ACY58511.1| flagellar hook-associated protein [Yersinia pestis D106004]
 gi|262366074|gb|ACY62631.1| flagellar hook-associated protein [Yersinia pestis D182038]
 gi|270335143|gb|EFA45920.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27]
 gi|294354483|gb|ADE64824.1| flagellar hook-associated protein [Yersinia pestis Z176003]
          Length = 554

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/555 (12%), Positives = 145/555 (26%), Gaps = 80/555 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NV 50
           MS  ++ N A +  N A    +++  NI N     Y R++T+   +             V
Sbjct: 1   MS-NSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV     E        L A  +            +  + + ++   +N+ +  +     +
Sbjct: 60  TVTGVNREYNAFITNQLRASQTQSSGLATYYQQISQIDNLLSN--ASNNLSTTMQDFFSN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEV-------------------------VQNFNTSAREV 145
           L++   N  +D   KTV+  AE +                             N  A ++
Sbjct: 118 LQNLVSNADDDAARKTVLGKAEGLVNQFQNADKYLRDMDDGVNQKITDSATQINNYAEQI 177

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
            K+     +      S     L +   +   +    A      D           +S + 
Sbjct: 178 AKLNDQITRLRGSSGSEPNALLDQRDQLVTELNQIMAVTVTQQDGDAYNVSFAGGLSLVQ 237

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--------------- 250
           G +             +  T  ++    +      +  T  S                  
Sbjct: 238 GPNAYKVEAIPSSADATRLTLGYKRGNGEATEVDESRITTGSLGGTLKFRSEALDSARNQ 297

Query: 251 ------------------PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                                I+G         A P     A  Q   S+   +++    
Sbjct: 298 LGQLALVMADSFNTQHNAGFDINGDEGEDFFSFADPTVLKNAKNQGNASITVEYKDTSKV 357

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----NP 348
            A      F   D       +   +    G+    +   +     I ++         + 
Sbjct: 358 KASDYTVEFDGTDWQVTRLSDNTKVQTTPGVNADGDPTLEFEGVAIKIDNGTPGPQAKDK 417

Query: 349 SFLRDGGSVSKKFLWNVKN-----LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++   +V+      + +      AG  D       +            +    TL   
Sbjct: 418 FTIKTVSNVAANLQVAITDSSKIAAAGSADGGISDNTNAQALLDLQSKKLVEGKTTLSGA 477

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  +    + +         +   ++    +  GVNL EE   L + +Q Y  + +
Sbjct: 478 YAGLVSNVGNQTATAKTNSTAQANIVTQLTTEQQSISGVNLDEEYGDLQRFQQYYLANAQ 537

Query: 464 LIMFTDKMLQTLLEG 478
           ++     +   LL  
Sbjct: 538 VLQAASTLFNALLSI 552


>gi|119477953|ref|ZP_01618053.1| flagellar hook protein [marine gamma proteobacterium HTCC2143]
 gi|119448866|gb|EAW30108.1| flagellar hook protein [marine gamma proteobacterium HTCC2143]
          Length = 429

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/482 (12%), Positives = 110/482 (22%), Gaps = 64/482 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---------QR 56
            FN A +    A+        NI NA    + R          N  V             
Sbjct: 2   SFNTALSGLRAANTDLEVSGNNIANASTIGFKRSRAEFGDVYANSLVSGSNTTGSGVLVN 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S ++      +    +++        F  + E          +            E Y  
Sbjct: 62  SISQQFDQGNISFTDNSLDLAINGTGFFVVAE------SSGATAYTRAGYFGIDDEGYIT 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L   +       V                                     +   
Sbjct: 116 NNSGSTLQGFLPTGTGSGVGG-------------------------------TPADLRVQ 144

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S   A D L   D      S    IS    N+ D    ++  T         + 
Sbjct: 145 SGDLAPSATSAVDLLFNLDARGDAPS----ISPFNPNDADTFNSSTSLTIFDSRGQAQVF 200

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                   V +  N          + Q    P G                 N   ++   
Sbjct: 201 STFYEKTAVENVWNMHAYISDDAGNLQNVISPAGGAGGA------------NPFFQLTFG 248

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
             G  +  +P     +N           +    +    +  I  + Q+ S+ S      +
Sbjct: 249 TDGLLTGTNPTGLTIDNWNPQGSNQSSTNGSTAIASDFTINIGPSTQFGSDFSVAAVDQN 308

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      +    ++   Y +          +A  +    L        GW +   S
Sbjct: 309 GFATGKLTGLEINTTGEVFARYTNGEALILGQVAMALFSNEQGLNPLGE--TGWAQSFES 366

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          I         V+L EEL  LI  ++++  + K I   D + Q ++
Sbjct: 367 GEPVVGAPLTGNLGGIQSGALEESNVDLSEELVRLIIAQRNFQANAKTIETADTVTQAII 426

Query: 477 EG 478
             
Sbjct: 427 NI 428


>gi|258404710|ref|YP_003197452.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796937|gb|ACV67874.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM
           5692]
          Length = 433

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 53/491 (10%), Positives = 118/491 (24%), Gaps = 69/491 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49
           M L        +      +    I  N+ N++   +    T+ +              + 
Sbjct: 1   MGLQGALYTGVSALGATGEAMNVIGNNLANSNTTAFKASRTLFSDLLASDVSSSSGTSQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T V   S +        +   S+       + F  + +      +              
Sbjct: 61  GTGVGLASVDTVFSQGGFNPTESSTDLAIEGEGFFKVSD-----PNTGADAYTRAGGFNF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + E +  N     +    +D     V N      ++       +       +NL      
Sbjct: 116 NDEGFLVNPQGYRVQGYDVDGDGNTVGNLKDIYTDLSGSVPAQETGRASLSTNLNASAEV 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               +      T++   + +  D            +  +    N  +  V    G T   
Sbjct: 176 GASFDINDPAGTSNFSTSINVYDSLGTSHLAN---VYFTKAGSNAWNYHVTADVGGTNTV 232

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                I F                                                    
Sbjct: 233 LKSHQIKFTSTG-----------------------------------------------Y 245

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L E+      +   + P      NV  +       +  N     + +      QY     
Sbjct: 246 LKEVDGNSYMNEKGEIPAGQEGNNVITVKNTGNPINWGNGSDGHVFDVEFNLSQYAGQSE 305

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +            N   +     +I  Y +  +K+     +A    N  L +   +   
Sbjct: 306 LVSKQQDGFSSGALNGIEVDQEGMVIGSYSNGESKDLAKLGLAKFANNNGLAQVGNSLFE 365

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
               N S    +          I  +      V++ ++ + +I  +++Y  +++ I  TD
Sbjct: 366 --ATNASGLPAIGTPG-AGVGTIRSNALEQSTVDIAKQFTDMITTQRAYQANSRTITTTD 422

Query: 470 KMLQTLLEGVK 480
            MLQ ++   +
Sbjct: 423 DMLQEVVNLKR 433


>gi|91792664|ref|YP_562315.1| flagellar hook protein FlgE [Shewanella denitrificans OS217]
 gi|91714666|gb|ABE54592.1| protein of unknown function DUF1078-like protein [Shewanella
           denitrificans OS217]
          Length = 455

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/483 (12%), Positives = 124/483 (25%), Gaps = 40/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI N +   +            N             VT 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNGKTAVGGGVTT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+A+        F      +      +          +    +Y 
Sbjct: 62  TQVAQQFSQGSLQFTSNALDLAISGGGFFVTSANIDTSQDQS---FSRAGAFKVDSNNYM 118

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+ + V+             I       S   V+  
Sbjct: 119 VDSAGNFLQAFPVDETGSSTSVSLTTTKPVKIPDTAGSPVKTSSIGMQMNLNSGDKVL-- 176

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                              D      ++    + +        +  S   T +   P + 
Sbjct: 177 -------------------DPAAFDPTDSKTFNKLTSVTMFDSLGESHVMTSYFVKPTNG 217

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           ++   +++ V    +   +D              G   A           ++  + +   
Sbjct: 218 SYTGESNWVVFYAVDGKQVDLAGTDVGTYQTDTDGDRIADTPQLAQTAGGWRGSVLKFND 277

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
           V   + S+   +   +  +PG  I            Q +S       QY SN        
Sbjct: 278 VGAYTGSDPAVLTTEALGLPGAGI----LGPGADGTQTLSIAFNNPTQYSSNFEVTELTQ 333

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           + +        ++     +I  Y +          +        L +       W     
Sbjct: 334 NGTTVGRLTNVSIGSDGLVIAKYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLD 391

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 392 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 451

Query: 476 LEG 478
           L+ 
Sbjct: 452 LQI 454


>gi|330445348|ref|ZP_08309000.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489539|dbj|GAA03497.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 467

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/488 (10%), Positives = 119/488 (24%), Gaps = 38/488 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
             N A +    A +   +   NI NA+   +                    T +   V  
Sbjct: 2   SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T         +      ++ +  +     F A+ +    ++  NN+          + E
Sbjct: 62  STVAQ---QFHEGSSIYTNNPLDLRVSGSGFFAVADN--KNEPANNNL-TRNGAFHLNNE 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    ++     V ++   + ++  I     K   +++S L     E   
Sbjct: 116 NELVNSEGKFLLGYPVNKESNTVASYEAKSMKIDDIFGQPTKSNNIKVS-LNLPNKETAP 174

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVL--LQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            N    F               D L    K++                       T+   
Sbjct: 175 KNGTFDFNDPDSFSRSTSSTIYDSLGKPYKMTTYYVAKYDPNATPTNANTWEVHQTITNN 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +   +   +    +       D        G  +   +                   
Sbjct: 235 SGEERLLKPDPASVPPAYRVIDNTD-PTAPVVTGYRMRFDQNGQPYPGDAGDPTATPPVP 293

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                 L            +          +   D   +           +         
Sbjct: 294 ATPPTPLNIQMETFASAGIDVGGADPTQTLNMNYDDPTQYASAFEVRKFEDV-------- 345

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                  +     +  ++    +++  Y +  +       +A ++    L +       W
Sbjct: 346 -----DGATTGYLSKVDIDPEGNILASYSNGKDVVVGRVALARVSNEQGLAQLGGTL--W 398

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S        SQ  F  I         +++ +EL  LI  ++++  S++ +   ++
Sbjct: 399 NTTQESGQAIWGDASQGSFGAIKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQ 458

Query: 471 MLQTLLEG 478
           + Q +L+ 
Sbjct: 459 LQQNILQI 466


>gi|114046838|ref|YP_737388.1| flagellar hook protein FlgE [Shewanella sp. MR-7]
 gi|113888280|gb|ABI42331.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-7]
          Length = 453

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 122/483 (25%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             ++              
Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D         + I   +   + M  Y           P + 
Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           ++   N++      +   +D   VS   G+         +     +       +   +  
Sbjct: 217 SYNGENNWVAYYAIDGKQVD---VSGPAGTYQTDTDGDGMADGTGTAQTTGGWKGSVLKF 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +G ++  DP    +E +            D      I        QY +  +      
Sbjct: 274 NSVGVYTGSDPAVVTTEALGVGGAGVLGPGADGTQDVTIKFNA--PTQYSAPFAATELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLE 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  IS S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEPNSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|87306349|ref|ZP_01088496.1| probable flagellar hook-associated protein [Blastopirellula marina
           DSM 3645]
 gi|87290528|gb|EAQ82415.1| probable flagellar hook-associated protein [Blastopirellula marina
           DSM 3645]
          Length = 567

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/448 (12%), Positives = 141/448 (31%), Gaps = 21/448 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M+L     +++N    A         NI N +  +Y+R   + T +             V
Sbjct: 1   MTLFTSLQQSKNALVAAQIGIQVTGNNIANVNTPDYLRERVIYTPAPTQSYGNLRLGMGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V     +     ++ L    S +      +S     E +   +  +   +  ++    S
Sbjct: 61  QVEAVVQQVDQFLEERLRNSISDLANGETQESAYLQLEALVG-ELSDTDISTSLNDFLGS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +        +  +    +   + + ++ +      +++  D +K+I+   +++   L+++
Sbjct: 120 INDILNQPEDVSVRNLSVLRGQTLARDISRLYGRAKEVHTDLNKQIKQAATDINSLLNDI 179

Query: 171 TVVNDAIKFKTA---SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N  I    A   +K DA    DQR   L +++ II I  + + N    V+      +
Sbjct: 180 ADLNVKITTLEAGPITKSDAIGLRDQRQRKLTQLAGIIDIKGVEQENGSTSVFLGGEYLV 239

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            + + R +  + +      +    +        ++       GK+  ++  RD++V  F 
Sbjct: 240 IDGIARQVETKSVAENGFNNVKLTL------AGTDSPILASSGKLAGMITSRDAIVGEFM 293

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSEN-VPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           N LD+ A+ L   F+                        L ++       T         
Sbjct: 294 NNLDDFAQTLTFEFNRVFSSGQGQTGYQTMTSEFFIDDALSDQPLDQAGLTYTPTNGSFK 353

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
             +     G  +   +    N       +    D+ ++         ++ ++ +   ++N
Sbjct: 354 IFTQNLQTGLKNTVDISVKLNGLPDDTSLQGLADAISEVDGLTASISLDGHLQIDSDSQN 413

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                  + S                + 
Sbjct: 414 VEFAFGSDTSGVLAALGLGTFFTGTSAS 441



 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 105/331 (31%), Gaps = 6/331 (1%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK-ISEIIGIS 208
               +++E +      F +    +        AS       +  RD ++ + ++ +   +
Sbjct: 241 DGIARQVETKSVAENGFNNVKLTLAGTDSPILASSGKLAGMITSRDAIVGEFMNNLDDFA 300

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
             +    + V  +  G T ++T+  +   +   S     ++   +      ++       
Sbjct: 301 QTLTFEFNRVFSSGQGQTGYQTMTSEFFIDDALSDQPLDQAGLTY----TPTNGSFKIFT 356

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +     L    D  V +     D   + L  + SE D +  +      L I    ++++ 
Sbjct: 357 QNLQTGLKNTVDISVKLNGLPDDTSLQGLADAISEVDGLTASISLDGHLQIDSDSQNVEF 416

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFI 387
                 S  +                  + +    +    A   + I     ++      
Sbjct: 417 AFGSDTSGVLAALGLGTFFTGTSASTIDIQQVLKEDPSKFAASKNGIGVDTDNAVEMAGF 476

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
            D         TL       +G + ++ S +  +    +V    +        GV+L EE
Sbjct: 477 LDRPLDSRNGQTLDNVYAQLVGEVTQSASVAKSVAEGYRVFKETLDGQKQGLSGVSLDEE 536

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              LI  ++ +  +++LI   D++L+ L+  
Sbjct: 537 AVNLITFQRQFQAASRLISVIDELLEVLVNI 567


>gi|118588734|ref|ZP_01546142.1| hypothetical protein SIAM614_18549 [Stappia aggregata IAM 12614]
 gi|118438720|gb|EAV45353.1| hypothetical protein SIAM614_18549 [Stappia aggregata IAM 12614]
          Length = 617

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/440 (15%), Positives = 141/440 (32%), Gaps = 14/440 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           M L +  N A        +Q      NI NAD   Y ++            +   +    
Sbjct: 1   MGLTSALNTAVFGITYNQRQLDVTASNIANADTAGYSKKTISANVYFDGNGNVAGLNATE 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R               +     R +  F    + +       +S +     L  +L S 
Sbjct: 61  VRRIVNEQIQSDYFNSLADTSYSRQIADFTDRLDDIFGTIDDKSSLSTLAGNLSSALSSL 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             +     + K V+  AE   +  N S  ++  +R +AD  +  +  ++   L+ +  ++
Sbjct: 121 VNDPGNYAIQKDVVSAAEAFAREINASYEQIADLRQEADNALASQTDSVNGLLASIEDID 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPR 233
           +AI+  T S     D  D+RD L++++S  + I     +NN + + T+ G  L+ +    
Sbjct: 181 EAIQSATQSGVSTADMEDERDRLIEQLSGYLDIDVSKNDNNSIAIRTAGGNQLYADGKAS 240

Query: 234 DINFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            + F   +        N + +        +  ++   G + A  ++RD ++   Q QLD 
Sbjct: 241 TLTFNATHLLQPGQAGNSVMVRTPGGTQYDLIASSKSGSMLATAELRDDILVEAQTQLDT 300

Query: 293 MARVLIGSFSEKD------PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +A  L  +FS  +       +  +S     +        +             V      
Sbjct: 301 IAAELSLAFSNVNVESTAATVGLDSGFDLDVSALQPGNTITLDYTDSSGNPQTVTLVAVD 360

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +P+ L    S +      V  +     +   Y  +         +   N     L    +
Sbjct: 361 DPTLLPLDDSATANPGDTVFGIDISSGVPATYITNITAALSGTGLLVSNDGSDNLRVLGD 420

Query: 407 SIGWLEKNRSDSHDLHMKSQ 426
           +          ++     + 
Sbjct: 421 NTAPTSVESLSANVTVTANS 440



 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/442 (10%), Positives = 132/442 (29%), Gaps = 7/442 (1%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL-KEMMSADDHYNN 98
           + + + +   V+      E   + +++    S  +          ++       +  Y +
Sbjct: 181 EAIQSATQSGVSTADMEDERDRLIEQL----SGYLDIDVSKNDNNSIAIRTAGGNQLYAD 236

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                ++     L    +  +  ++        + +  + + S     ++R D   E + 
Sbjct: 237 GKASTLTFNATHLLQPGQAGNSVMVRTPGGTQYDLIASSKSGSMLATAELRDDILVEAQT 296

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           ++  +   L  L   N  ++   A+      F      L    +  +  +    N   + 
Sbjct: 297 QLDTIAAEL-SLAFSNVNVESTAATVGLDSGFDLDVSALQPGNTITLDYTDSSGNPQTVT 355

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +   D  TL               + +   S         +++                +
Sbjct: 356 LVAVDDPTLLPLDDSATANPGDTVFGIDISSGVPATYITNITAALSGTGLLVSNDGSDNL 415

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET- 337
           R          ++ ++  +  + +    +         +        L+    +    + 
Sbjct: 416 RVLGDNTAPTSVESLSANVTVTANSDQGLGLAIFVDQRVGTDLFTDALEGGGQRLGYASG 475

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I VNP   ++ + L +  +       N    A Y                    A     
Sbjct: 476 ISVNPDLLADSALLVNYQTTPTPNTSNDPARAKYLSDALSVGTKHYDPGSGIGSASTPFQ 535

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            TL++Y   ++ +      D+       + +  +++  Y  +  V+L  EL+F++++E +
Sbjct: 536 GTLVDYVNQTVAFQGNQAEDAATYADSKEALTMNLAIRYEQSYSVDLDAELAFMVQLENA 595

Query: 458 YNISNKLIMFTDKMLQTLLEGV 479
           Y  + +++     + + LL  V
Sbjct: 596 YAANARVMQTIKDLFEELLNIV 617


>gi|218708810|ref|YP_002416431.1| flagellar hook-associated protein FlgK [Vibrio splendidus LGP32]
 gi|218321829|emb|CAV17801.1| flagellar hook-associated protein FlgK [Vibrio splendidus LGP32]
          Length = 626

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 137/401 (34%), Gaps = 19/401 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVV 53
             + N        A +Q  +   NI NA+ + Y R+  +                 V V 
Sbjct: 3   SDLLNVGAQSVLTAQRQLNTTGHNISNANTEGYSRQSVVQGVNDPRQYGGQTYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  ++    +   ++   +   M +           +++  DS+++
Sbjct: 63  NVRRSWDQFAVKELNLSTTNAANKADTEANLDMLSSMLSSVVSKK-IPENLNEWFDSVKT 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   ++    K VI+ A  + +  N     V++    A+K++++ I  + +   E+  +
Sbjct: 122 LADTPNDVGTRKVVIEKAGLLSKTLNEFHETVRQQSDSANKKLDMGIERVNQIAYEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR-NNNDMVVYTSDGTTLFETVP 232
              +          +D  DQ + L+ ++S    ++   R NN    V+  +G TL     
Sbjct: 182 QRLMVRTP---GPHNDLQDQHEQLVNELSGYTKVTVTPRANNEGFNVHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                + ++      +     ++G  + +   +    G+I A+L +RD  +P   ++L  
Sbjct: 239 ASQL-KMIDGVPDAHQRRLAIVEGKSLKA-ITNRDIDGQIGAMLDMRDEHIPAVMDELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE--TICVNPQYRSNPSF 350
           +A       +       +     G  +   +        +  +   +      Y  + S 
Sbjct: 297 LATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKADVAVYIDDTSA 356

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
           L+ G    K    +   +    + +    +S    F  D +
Sbjct: 357 LKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGM 397



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 111/399 (27%), Gaps = 6/399 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I  + D+ +     +    L      + +  +          
Sbjct: 227 IGNGHTLVSGTEASQLKMIDGVPDAHQRRLAIVEGKSLKAITNRDIDGQIGAMLDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQK 200
           +  +  +  +        +    S+   +N  +     +  ++      R          
Sbjct: 287 IPAVMDELGRLATAFSYEVNALQSQGLDLNGNVGKNLFTDVNSELVAKSRVTAHGQSKAD 346

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS-ESNPIFIDGVVV 259
           ++  I  ++ ++     + Y      + +     +     ++      +   + +     
Sbjct: 347 VAVYIDDTSALKGGEYGLKYDGSDYVVIKPDGETVKVSTNSTGNAFYLDGMRVEVRNPPE 406

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +    P     A +Q+          Q  E +       +    +A        + +
Sbjct: 407 LGEKLLLRPTRNFAAQIQMETKDPKDIAAQSYEASTTFAKGTAGFKILAAGQLREFEVIV 466

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           +   +       +G           +   +       ++   + N K  A          
Sbjct: 467 SPKGEQFAVTDPKGNILMQPQPYPPQGPVTINGTTFELTSGAVANDKFTANLVPSEGDNG 526

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +      +       +   T+L+   N         S ++ L   +++      E  ++ 
Sbjct: 527 NLRKLQDLQTGKVLDDGESTILDLYHNLNTNTGLKSSTANRLSDIARLEKESAQERIASV 586

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 587 SGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 625


>gi|120598232|ref|YP_962806.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1]
 gi|120558325|gb|ABM24252.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1]
          Length = 453

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 108/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTVGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   D             +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFS----YTRAGAFKVDASNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S + L    +D          T+A+ VQ             +S              
Sbjct: 118 VDSSGNYLQTFPVDKEGNSTSVSLTTAKPVQIPDTAGSPVKTENVS-------------F 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D         + I   +   + M  Y        +      
Sbjct: 165 QMNLNAKEGSLDPAAFDPTDPKTYTSVTSMTIYDSLGEPHIMTSY------FVKPTDGAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N E         +   + +DG   +    +               +              
Sbjct: 219 NGENNWVAYYAVDGKQVDVDGAAGTYQTDTDGDGVPDG-------TATAETTGGWRGSVL 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                     G+        Q ++       QY +  +      
Sbjct: 272 KFNSVGVYTGSDPAIVTTETLGVGGAGVLGPGADGTQNLTIKFNAPTQYAAPFAATELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLN 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  IS S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|315122284|ref|YP_004062773.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495686|gb|ADR52285.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 422

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/481 (10%), Positives = 123/481 (25%), Gaps = 60/481 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +L     A +  +  S + +++  NI N +   Y R     +            S   
Sbjct: 1   MGILGTMKTAMSGMDAQSNRVSAVSDNIANVNTIGYKRTAVSFSSLVFPPAAGCHTSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119
            + +K + +   ++             E      D             + + E + +N +
Sbjct: 61  AVSEKDMISSQGSLIHTASNTDLAIQGEGFFVVKDKTGTHYLTRSGNFQINNEGFLQNTA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +L    + NA   +   +    E   +R    + +   + ++   L +   V    K 
Sbjct: 121 GYVLQGYPMRNAFSPLVLNSFQGLETINVRNFEPRAVPTTLGSIPANLDKDAKVVVRSKT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++  DA                                                +F  
Sbjct: 181 PKSNGGDA------------------------------------------EYTHKSSFSA 198

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++       +  +                   K +     +      +   +     + 
Sbjct: 199 YDTLGSRVIYDLYYTKVEDKKWEVSIFRQDQSSKTIFPYNVTNPLAVIDVSFDPVTGHLA 258

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             S K+    ++ +     I   I      +   I +   +N Q    P         S 
Sbjct: 259 ESSPKEISFDDNTSGISHPIKIDISKTTQLVGGFIPQNAVINGQAPGKP------RDFSV 312

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               N+  +      +  Y  +       + +   + N            +L    S   
Sbjct: 313 SKDGNIDVIYDDGTRVPVYRLAIATVPSENSLKICDGN-----------TYLPTRDSGDI 361

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +          +      T  V++  EL+ LI+ +++Y  ++K+       +  L+   
Sbjct: 362 SIGYPGNDQRGDVLSGALETANVDIANELTELIEAQRNYAANSKVFQTGSDFMDILISLK 421

Query: 480 K 480
           +
Sbjct: 422 R 422


>gi|146341929|ref|YP_001206977.1| putative flagellar hook-associated protein FlgK [Bradyrhizobium sp.
           ORS278]
 gi|146194735|emb|CAL78760.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein)
           [Bradyrhizobium sp. ORS278]
          Length = 621

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 142/452 (31%), Gaps = 20/452 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR-----DTMTTISPENVTVVTQ 55
           M L +    A +   +     + I  N+ NA+   YV +     +  +      V     
Sbjct: 1   MGLSSALATAMSGLRSTQAALSIISSNVANANTPGYVAQNPNQIEVASGGFGSTVMTTGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +        L   +S       + +     + +      + +    ++    +L+S S
Sbjct: 61  NRQLDLFVQNQLRTETSGGAYADQMANILKQLQSVYGTPGGSGTLETALNNFTTALQSLS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S        +  A+ V Q  N + + +Q +R++ +++I   ++ +   L ++  +N 
Sbjct: 121 NNPSNQSAQSVALSAAQGVAQQLNATTKGIQTLRSNVEQDIGDSVTQVNGALKQIATLNT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-------- 227
            ++  ++S   A    DQRD  +  +S+ + I  +  + N + V+T+ G  L        
Sbjct: 181 QLQGLSSSDPLAATLQDQRDNAIDTLSKYVDIRVVPDSTNGISVFTNSGIQLVGAGLTSE 240

Query: 228 -----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                  T+     +    +     + N    +GV +     S +  G+I A L++RD  
Sbjct: 241 FTFSSPGTLDATSQYNSNPTKNGVGQLNIKLSNGVSLDVVANSLLNSGQIAADLKLRDQT 300

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   Q Q+D++A     + S+K          P  F       L                
Sbjct: 301 LVQAQTQVDQLAATFASALSDKTTAGTTVSGPPAGFDVSTTGLLAGNTINLTYTDSSNVQ 360

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAG--YPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +     +         +       +  G  +   +       N       +   N   T 
Sbjct: 361 RQVKIVNVNDPAALPLQNATGANPSYVGVDFSLGMASVVTQLNSALGSAHLQFSNPTGTT 420

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           L    +         + S             +
Sbjct: 421 LRITDDGTSQATVKAASSTTTVQTLASGNAQL 452



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 93/337 (27%), Gaps = 4/337 (1%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
           + ++       D+ +    + + +  +              +        D     L   
Sbjct: 287 SGQIAADLKLRDQTLVQAQTQVDQLAATFASALSDKTTAGTTVSGPPAGFDVSTTGLLAG 346

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + I    T   N    V   +        +               S      +  +  + 
Sbjct: 347 NTINLTYTDSSNVQRQVKIVNVNDPAALPLQNATGANPSYVGVDFSLGMASVVTQLNSAL 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
                         L+I D        +       +    S    +   ++      +  
Sbjct: 407 GSAHLQFSNPTGTTLRITDDGTSQATVKAASSTTTVQTLASGNAQLPVFTDGGA---LYT 463

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G          G++  + VNP   ++ + L    +       +          +     S
Sbjct: 464 GAITSSGSQMTGLAGRLNVNPALLNDATKLSTYSTSPATAAGDSTRPDFIFAQLTSATFS 523

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
           ++        A      T+  Y +  +       + +  L     VV   + E + +T G
Sbjct: 524 YSPTTGLGSAAQ-PFQGTVSGYLQQFVSQQGSASTLATQLSQGQSVVVATLKEKFQSTAG 582

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VN+  E+S LI+V+ +Y  +  ++     M+Q+LL+ 
Sbjct: 583 VNMDSEMSNLIQVQNTYAANAHIMSVVQSMMQSLLQA 619


>gi|157961171|ref|YP_001501205.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345]
 gi|157846171|gb|ABV86670.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC
           700345]
          Length = 453

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 113/483 (23%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +  ++A +   +   NI N +   +                          V  
Sbjct: 2   SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++++        F      + + DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSMQFTNNSLDMAINGGGFFVTSSEVGSQDHS----FTRAGAFKFDSNNYI 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+ + VQ            ++       +  + ++ 
Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGSPVKTDQVGIQMNLNAGESTLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D      S  + I   +   + +  Y      +       I
Sbjct: 178 -------------AAFDPDDPETFNNSTSVTIYDSLGEPHILTSYF-----VRPPNAAHI 219

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 ++          +DG  V  +  +            +               A 
Sbjct: 220 GESNWVAF--------YAVDGKPVDLDPAAGEYDIDTDGDGAVDGQASAENAAGWKGAAV 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               + +                    +        Q ++       QY S         
Sbjct: 272 SFNDTGAYTGSNPAVITTEALGVGGANVLGPGADGSQTLTLDFNNPTQYASPFEVTELNQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           + +         +     +   Y +          +        L +       W     
Sbjct: 332 NGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGN--TSWKASLD 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|262273529|ref|ZP_06051343.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886]
 gi|262222507|gb|EEY73818.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886]
          Length = 401

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/474 (10%), Positives = 109/474 (22%), Gaps = 74/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
             N   +     S Q  +I  NI N     Y    T             +    +    +
Sbjct: 2   SINIGLSGLRATSDQINTISHNISNVGTVGYKSSRTEFQDVYAPQFGGGEFGGVEVSNVR 61

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                S A              E                       + Y        L  
Sbjct: 62  Q-SFTSGAATSTGRNSDLAINGEGFFMVQQNGQRMYTRNGIFNLDSDGYLVTADGLRLQG 120

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +     +      +  ++Q   AD   ++  ++S      +   V+    K       
Sbjct: 121 YGVSETGSIQNG---ALTDLQISTADMAAKVTTKVSLGVNLDASAAVIVPKEKK------ 171

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                                       ++      S  TT+++++  +    +    T 
Sbjct: 172 -------------------------FDKDDPSTFTCSASTTVYDSLGGEHEITQYFVKTD 206

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +  ++        + + +   +   L++  D +      +                
Sbjct: 207 ENTWSVHYVADGKELDPKNTQLEFDENGKLIKPEDPISVTLTPK---------------- 250

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                +      I   +    Q+ S+ S                
Sbjct: 251 ---------------------NGSATMKIEMDVSEFTQFGSDFSINESKQDGYAPGKLAG 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                   +   Y +   +      +A       L +       W E   S +       
Sbjct: 290 WYFDADGSVYARYSNGKTQLQGQLVLARFPNQEGLQQ--AGGTRWTESFSSGTALFGQPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              F  +      +  V+L EE+  L+  + +Y  + K I  + +M+Q L + +
Sbjct: 348 TGQFGALRVGAYESSNVDLTEEMVSLMSAQSNYQANAKTIQASQEMVQILFQNM 401


>gi|78355345|ref|YP_386794.1| flagella basal body rod domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217750|gb|ABB37099.1| flagella basal body rod domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 501

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/504 (10%), Positives = 124/504 (24%), Gaps = 27/504 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR--------DTMTTISPENVTV 52
           M++ +            SQ    I  N+ N +   + +             T    N TV
Sbjct: 1   MTIAS-LYIGATGMKTHSQGMQVIGNNLANINTVGFKQSMMLYQDLTSLDVTTGGNNPTV 59

Query: 53  V-TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             +Q+    ++ +  +   +        +       +        + +        R  L
Sbjct: 60  GMSQQGMGASVAEVRVLHTAGGFEPSNTVTDLAISGKGFFQVAQGDKTHYTRAGNFRFDL 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E Y  +     L    I+N                                    ++   
Sbjct: 120 EGYLVDPGGYRLQAKPIENGVAGGLQDLQLVAGENGNMVLPPSATTSLSIISNIGVTSDN 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             +    + +  +                 S+ I +     N +++ VY  DG       
Sbjct: 180 SASATDPYFSLLQQWNGTAEPPLGDGAYGHSDSIAVYDAAGNKHEVSVY-YDGAPDGPDG 238

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            R + +      +    +        ++ +   +    G++  +           Q    
Sbjct: 239 QRIVEYVMAMPPSEDGGAGAGTSAAGLLMAGTLTFNANGELINM-TAYTPSGDASQLSSW 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + A +    +         S     +  A            G + ++  N       +  
Sbjct: 298 QPAAMGADGYPSFTATFAGSGGGAQVMTAGFGMTGTGWTGGGSAASVGSNASQLPGLAGA 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR------ 405
                V+  +  +  NL    +                 ++G  +N  +++  +      
Sbjct: 358 ARQARVTTGYEGSSSNLHRTQNGYAQGGLMSLAIDSEGVMSGKFSNGQVVDLYQIPLFRF 417

Query: 406 ---------NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
                        +     S            F  ++ S      V+   E   +I  ++
Sbjct: 418 TSEFGLRREGGNHFSATRESGEAQEGTAKTENFGSVAASTLEMSNVDASREFVNMIITQR 477

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
            +   +K++   D MLQ  LE  +
Sbjct: 478 GFQSQSKVVTTADTMLQKALELKR 501


>gi|307609983|emb|CBW99512.1| flagellar hook-associated protein 1 [Legionella pneumophila 130b]
          Length = 649

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 110/333 (33%), Gaps = 17/333 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54
           ++ N A +  N   +       NI N   + Y R+              +     V+V +
Sbjct: 2   SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +  + +  S   Q     +     + + + D   +S +  +    DS+   
Sbjct: 62  IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +           V+  ++ + Q FN+   ++++   ++  ++   +  + R   EL  VN
Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTLQVTESVKIINRITKELAEVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       ++  + LD RD LL+++S    +S   + +  + V  + G  L     + 
Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +            +      G     +    +  G +  L+    +V+      + +MA
Sbjct: 235 RDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             L  +F+ +  +  +  +  G           
Sbjct: 295 IGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPG 327



 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 106/375 (28%), Gaps = 17/375 (4%)

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D     +   ++ + Q     A+                  +     +    +    +  
Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSRAS 336

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +   A   ++  D+   K+S+   I +    N   ++  SDGT+   T          
Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +  V  +   I ++ +   +N           A       +   ++  L    +     
Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLIPTRGAARDFALEIKDAYEIALASPVKTTASL 454

Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            +                           D +              +   P+        
Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIP 514

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405
                     L+G P   + +   +N     D   G+            N + TL +   
Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    + +      + ++     +   +  GVNL EE + L+  +Q+Y  + KL+
Sbjct: 575 SLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634

Query: 466 MFTDKMLQTLLEGVK 480
             +++++  L + ++
Sbjct: 635 EISNQIMNLLFDIMR 649


>gi|291526374|emb|CBK91961.1| flagellar hook-associated protein FlgK [Eubacterium rectale DSM
           17629]
 gi|291526819|emb|CBK92405.1| flagellar hook-associated protein FlgK [Eubacterium rectale M104/1]
          Length = 617

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/473 (11%), Positives = 144/473 (30%), Gaps = 33/473 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49
           S     +   +  ++      +   NI N     Y R++                     
Sbjct: 3   STFFGLHIGSSALSSFQVATNTTANNIANVKTTGYTRQEATLQAKDAINVTARYGSVGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-NSPTHYISKLR 108
           VTV + + +    +D     ++S  G+      +    +    D+  +    +   S++ 
Sbjct: 63  VTVTSIKQQRDLYYDNKYWENNSCYGRYEQKLYYMEQIQNYFKDNGSSVKGFSSVFSQMF 122

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
             L++     S+  +    I +A+ +   FN  +  + K++ D ++EI   +  +     
Sbjct: 123 SDLDTLRSKPSDKTVRNQFISSAQSLCTYFNQMSDNLSKLQDDCNEEIRNNVDKINSISE 182

Query: 169 ELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           +++++N  I      +  +A    D+R  L+  +S+I+ +S       +       GT  
Sbjct: 183 KISLLNKEINQIETGTGVEAGSLRDERANLIDSLSKIVNVSYNETEVQNTNGDNLGGTNF 242

Query: 228 FETVPRDI-------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
              +  +              + +  N+ T   +   I+ +   +  +  +    G +KA
Sbjct: 243 SLYINGEKVVEGKDYRKLICESSKTKNNQTDNDDLYKIYWEDTKMEFSATAGTAGGSLKA 302

Query: 275 LLQIRDSVVPI------FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           L ++RD            +     +    I   + K     + +    +       D   
Sbjct: 303 LFEVRDGDNLENFKGKVTKADSYSLTVENISIDNIKSLNLPDKDGKITVNNISYSYDSWE 362

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                      V      + +      +V++ +L N  +      +  +          F
Sbjct: 363 AQVDAQGNIKSVTFNLSKDKAIADPEKTVAEGYLLNAGSAINARGIPYYMTQLNEFVRNF 422

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +     +            + E   + +          ++ + +  + T+ 
Sbjct: 423 SEMFNQIESKGQNLNGDTPPTFFEAITNTAKVYDFSESEAYSKLPDGQTATIN 475



 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 10/216 (4%)

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           + A   I    +P +  QL+E  R     F++ +    N          + I +      
Sbjct: 397 LNAGSAINARGIPYYMTQLNEFVRNFSEMFNQIESKGQNLNGDTPPTFFEAITNTAKVYD 456

Query: 332 QGISETICVNPQ-----YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-----DS 381
              SE     P        S+ +      + +     +V N          Y      D 
Sbjct: 457 FSESEAYSKLPDGQTATINSSSNTYYRMTAANFSVNKDVMNDVSLFATSTDYVKTDSCDI 516

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
            ++         +        +    I  +  +   +   +     +   I+   ++  G
Sbjct: 517 VDELKKLQSEKTVYRGDKAESFLETIISNVSVDTEKAETYNKLYSNLEQTIANQRTSVSG 576

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           V+  EE   L+K + SYN+++K+I   ++ML  L+ 
Sbjct: 577 VDEDEEALNLVKFQYSYNMASKIISVMNQMLDKLIN 612


>gi|296531742|ref|ZP_06894567.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957]
 gi|296267925|gb|EFH13727.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957]
          Length = 506

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 124/511 (24%), Gaps = 36/511 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53
           M+ +     + +  N  + + + I  NI N+    Y R DT         + S       
Sbjct: 1   MTAINALRTSTSGLNAQAVKLSGISNNIANSSTVGYKRVDTQFESLVLEGSSSGSYALAG 60

Query: 54  TQRSENKNMF-DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   +     +               F  + E     D             R    
Sbjct: 61  VTPRNRVEISKVGQVQRTGVDTDIAVSGNGFLVVNEN---SDSTGKYLATRAGSFRPDAF 117

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N +   L    +      V N   +  +        +  +    +   R    L  
Sbjct: 118 GNLVNSAGFYLQGVKLGADGLPVGNLGDNNVDSLSTVNVNNISVASAPTTEMRTWFNLPK 177

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            +                +D  D      +     + ++   +     +S    +F++  
Sbjct: 178 NSTGYASPPPPADSFVSSIDYYDPTGGTQTLTYRFTPVLPEQDGAPDTSSWTLEIFDSAS 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI-------------------- 272
            D+    +   T    +  +       S+   +AV                         
Sbjct: 238 GDLASTNLYDTTKRVAALGLQFWSNGTSAGTLAAVWDATAQAAGAAQVAPGFTAPVGSAP 297

Query: 273 ---KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                                      L  +       A        + +  G    +  
Sbjct: 298 LLSGVPNPATYGANASTPATNYGTPDNLAAANVLGTYDAVKGTLTVRVGVQGGFAGTELP 357

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           +  G         Q   N    +   + S   L    ++A    +I  + +  ++     
Sbjct: 358 ITIGTFSNFEGITQLTGNYLPTKIEKNGSAFGLLERVSVADDGQVIATFSNGKSRPIYAL 417

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +A       L   + +   +     + +  L           +     +  V++  EL+
Sbjct: 418 KLAVFPNANGLNPVSGD--AYEMSLAAGAVRLIDPGTGAAGTTNGGALESSNVDIGTELT 475

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI+ +++Y+ +  ++   D+ML+      +
Sbjct: 476 NLIETQRAYSSNATVVRTADQMLEEATNLKR 506


>gi|220927553|ref|YP_002504462.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum
           H10]
 gi|219997881|gb|ACL74482.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum
           H10]
          Length = 708

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 125/400 (31%), Gaps = 21/400 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PE 48
            + +  A++    + +       N+ N     + R+  +   +                 
Sbjct: 5   FSSYEIARSGLKVSERGLFVTGHNLSNVHTPGFTRQQAIIETNPYITQYGKNGKLFQYGL 64

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              +   R       D V    ++  G            E +  +D   +     ++K  
Sbjct: 65  GADIQETRQIRHTFLDIVYRQENTIQGYWDTRSKAFQDVEAIL-NDPMGDGLQGVMNKFW 123

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DS +  SK          V    +E+V  +N    ++ K++ D + EI++ I+ +    S
Sbjct: 124 DSWQELSKEPESLTTRAMVRQRGQELVYYYNHIGNQLDKLQNDLNSEIQVRINEVNNLTS 183

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  +N  I  +  +   A+D+ DQR++LL ++S +         +  M V       + 
Sbjct: 184 QIAKLNTQIAAQEINGDKANDYRDQRNLLLDRLSILCDAEVNEMQDGQMDVTLGGYYIVT 243

Query: 229 ETVPRDINFEKMNSYT---VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
               +++  +                     V     +G    +G++  +    ++  P 
Sbjct: 244 RGQSKNLYVQANAEDGEFFYPKLEGTNIKVNVKSGILKGLMEARGEVPGIKGSTENGTPN 303

Query: 286 FQNQ--LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           ++                + +D ++     +    +   I+ +       + E I     
Sbjct: 304 YKADITFAIDVSDGNNFDNLRDSLSSYISELKQSGLDYNIRIITMGATSSVHENIYDKSN 363

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
             S  + +     +      N  +  G  + +    ++ N
Sbjct: 364 IDSMLADITANNLLEADATVNDGSFKGLINELTALNNAPN 403



 Score = 91.2 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 116/394 (29%), Gaps = 5/394 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
           ++  A D  + +    +     S  S  K    D   + +   A   V         +  
Sbjct: 307 DITFAIDVSDGNNFDNLRDSLSSYISELKQSGLDYNIRIITMGATSSVHENIYDKSNIDS 366

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR----DVLLQKISE 203
           + AD      LE        S   ++N+      A      D         +  +   S 
Sbjct: 367 MLADITANNLLEADATVNDGSFKGLINELTALNNAPNGFREDAKRYTYVFTNKSINGDSV 426

Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
                     N    +          T P      K ++ +       I   G   S   
Sbjct: 427 AADAFIGDAANYVNSLKGMGMKVSVVTDPAYNTNGKPDAASNPEAGWSIITLGTGGSLAD 486

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL-IGSFSEKDPIAGNSENVPGLFIADG 322
            ++   G    L    DS+V   ++ L  +   L I S  +    A  +  V  +     
Sbjct: 487 INSDLAGYTSMLKDWNDSLVQTVKDALGNIPPSLNIVSDIKIKLNAMLNRMVNEINSLQM 546

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                +            N       +       +S   L N+          N      
Sbjct: 547 SGMTLDGKPGVAFFEAMDNNYPIEMGNLKLSNALLSDSGLNNITASKTAAKGDNTVAKQI 606

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                 D +      V++ EY RN I  L     ++  +      V N +    +   GV
Sbjct: 607 ANLRDVDILVNSTGRVSIDEYYRNLILELGNGGMEAERIATSQATVVNAVDAQRNAISGV 666

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           ++ EE+S ++K + +Y+ S++++   D M++T++
Sbjct: 667 SMDEEMSNMMKYKFAYDASSRVLNIMDSMMETII 700


>gi|117620743|ref|YP_857343.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562150|gb|ABK39098.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 444

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 126/483 (26%), Gaps = 51/483 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +       NI N +   +            N             V  
Sbjct: 2   SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L   ++A+        F    + ++  D             + +  SY 
Sbjct: 62  GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSDGLTNLDRT----FTRAGAFKLNENSYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N   + L    I+           + + +Q      + ++   +             + 
Sbjct: 118 VNNQGNYLQGYEINTDGTPKAVSINATKPIQIPDRAGEPKMTELVE-----------ASF 166

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +  ++ +K  +    D  +      S  + I   +   + +  Y        E      
Sbjct: 167 NLSIESKTKPTSPTAFDPTNSATFAHSTSVTIYDSLGAPHVITKYFVR----HEDPAAPG 222

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 ++++        ID    S +  + VP G                     +M  
Sbjct: 223 TPLTPGTWSMYMYEGNKPIDIAGGSPSPATGVPTG--------------------VKMEF 262

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G       +  +      L    GI        Q +   +    QY S  +  +   
Sbjct: 263 TSGGKLDPTKTVPADPIKTVALGTTAGIITNGADPAQTLEIRLGDVTQYSSPFNVTKLTQ 322

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y ++         +A    +  L +       W +   
Sbjct: 323 DGATVGNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGD--TSWRQSLL 380

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +      I  S      V+L  +L  LI  ++++  +++ +     + QT+
Sbjct: 381 SGDALPGTPNSGTLGSIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 440

Query: 476 LEG 478
           L+ 
Sbjct: 441 LQI 443


>gi|160896079|ref|YP_001561661.1| flagellar basal body FlaE domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160361663|gb|ABX33276.1| flagellar basal body FlaE domain protein [Delftia acidovorans
           SPH-1]
          Length = 423

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 105/473 (22%), Gaps = 52/473 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+    I  NI NA+   +         +  +                
Sbjct: 2   GFQQGLSGLNAASKNLDVIGHNIANANTTGFKSSRAEFAEAVASAVG------------- 48

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                S++     +  +  A+ +               ++   +      +        +
Sbjct: 49  -----SASGQNSGIGVNVAAVTQQFRQGPITTTGNNLDVAINGNGFFVVRQPDGSTAYTR 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 ++           V     DA     L        +         I  KT +K 
Sbjct: 104 AGNFGLDKQGNLKTVQGDNVMGYPVDATTGKVLAGGQPVPMVFPSGQ---PIAAKTTTKI 160

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D    LD R       S                                         T 
Sbjct: 161 DVSLNLDARATPAAGNST-----------------------------ATPPVPATPRATY 191

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  N     GV                  +            ++  +   L+   S K 
Sbjct: 192 GTSINVYDSQGVPTPVQMYFEKDAASNTWKVYDGLDDPTASPPKVATLLTTLVFDASGKI 251

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                          +           G++       Q+ S  +                
Sbjct: 252 TSGSPVTAQIKSSNPNAPTPGTINGTAGVTLDFSNVSQFGSKFAVSSLKQDGYTAGALTG 311

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            N+     ++  Y +   +      +A       L     N   W+E + S         
Sbjct: 312 INVGNDGSIVATYSNGVTRTEGQLALAAFTNTQGLGAVGDNK--WVETSDSGPALNGTAE 369

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +         V+L  EL  ++  +++Y  + + I   D++  TL+  
Sbjct: 370 SGTFGSLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVFSTLVNL 422


>gi|54294169|ref|YP_126584.1| flagellar hook-associated protein FlgK [Legionella pneumophila str.
           Lens]
 gi|53754001|emb|CAH15472.1| flagellar hook-associated protein 1 [Legionella pneumophila str.
           Lens]
          Length = 649

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 110/333 (33%), Gaps = 17/333 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54
           ++ N A +  N   +       NI N   + Y R+              +     V+V +
Sbjct: 2   SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +  + +  S   Q     +     + + + D   +S +  +    DS+   
Sbjct: 62  IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISAPLQTFFDSIGQL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +           V+  ++ + Q FN+   ++++   ++  ++   +  + R   EL  VN
Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTLQVTESVKIINRITKELAEVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       ++  + LD RD LL+++S    +S   + +  + V  + G  L     + 
Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +            +      G     +    +  G +  L+    +V+      + +MA
Sbjct: 235 RDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             L  +F+ +  +  +  +  G           
Sbjct: 295 IGLAQTFNTQHKLGIDMNSQIGKDFFTDFNSPG 327



 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 106/375 (28%), Gaps = 17/375 (4%)

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D     +   ++ + Q     A+                  +     +    +    +  
Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGIDMNSQIGKDFFTDFNSPGQMLKRSRAS 336

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +   A   ++  D+   K+S+   I +    N   ++  SDGT+   T          
Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +  V  +   I ++ +   +N           A       +   ++  L    +     
Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASL 454

Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            +                           D +              +   P+        
Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIP 514

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405
                     L+G P   + +   +N     D   G+            N + TL +   
Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    + +      + ++     +   +  GVNL EE + L+  +Q+Y  + KL+
Sbjct: 575 SLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634

Query: 466 MFTDKMLQTLLEGVK 480
             +++++  L + ++
Sbjct: 635 EISNQIMNLLFDIMR 649


>gi|116250500|ref|YP_766338.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255148|emb|CAK06222.1| flagellar hook protein (agr_c_1012p) [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 433

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/481 (10%), Positives = 115/481 (23%), Gaps = 49/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLS 119
               +   +    I             +        + +P            E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSSTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D     V            +  +    I       +  L     V      
Sbjct: 121 GFQLMGYSYDAGSPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSGANVVSTAAD 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
           + ++         ++  ++   S    +          V      T    +      F  
Sbjct: 181 RPSANSATTTADTKKFSMVAYDSLGNKVMYDFYFTKTSVTTPPPATPATASTWEVAIFRN 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++ T  + S P     +  ++                                      
Sbjct: 241 ADAATGGTTSFPYSTAAIGTTTLD------------------------------------ 264

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                     ++             D   +  Q I   +    Q  ++ +        + 
Sbjct: 265 ---------FDATGKITNSTGAVTIDDTARTGQMIDMDLTGFTQLGADFAGTGTPNGQAA 315

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +V  + G   +   Y D   K     P+A + +   L   + N        +S   
Sbjct: 316 SPVKDVT-VDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGVT 372

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I         V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 373 VTGFPQTNGLGTIKAGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVNLK 432

Query: 480 K 480
           +
Sbjct: 433 R 433


>gi|148358812|ref|YP_001250019.1| hypothetical protein LPC_0694 [Legionella pneumophila str. Corby]
 gi|296106857|ref|YP_003618557.1| flagellar hook-associated protein 1 FlgK [Legionella pneumophila
           2300/99 Alcoy]
 gi|148280585|gb|ABQ54673.1| hypothetical protein LPC_0694 [Legionella pneumophila str. Corby]
 gi|295648758|gb|ADG24605.1| flagellar hook-associated protein 1 FlgK [Legionella pneumophila
           2300/99 Alcoy]
          Length = 649

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 127/413 (30%), Gaps = 23/413 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54
           ++ N A +  N   +       NI N   + Y R+              +     V+V +
Sbjct: 2   SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +  + +  S   Q     +     + + + D   +S +  +    DS+   
Sbjct: 62  IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +           V+  ++ + Q FN+   ++++   ++  ++   +  + R   EL  VN
Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       ++  + LD RD LL+++S    +S   + +  + V  + G  L     + 
Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +            +      G     +    +  G +  L+    +V+      + +MA
Sbjct: 235 RDLVVGTGKDSIFGTKIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------NP 348
             L  +F+ +  +  +  +  G             L +  +          S      + 
Sbjct: 295 IGLAQTFNAQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQ 354

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
             L D   +      N   L    D  +      +          +   +T+ 
Sbjct: 355 VKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTIT 407



 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 105/375 (28%), Gaps = 17/375 (4%)

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D     +   ++ + Q     A+                  +     +    +       
Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTAS 336

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +   A   ++  D+   K+S+   I +    N   ++  SDGT+   T          
Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +  V  +   I ++ +   +N           A       +   ++  L    +     
Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASL 454

Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            +                           D +              +   P+        
Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIP 514

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405
                     L+G P   + +   +N     D   G+            N + TL +   
Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    + +      + ++     +   +  GVNL EE + L+  +Q+Y  + KL+
Sbjct: 575 SLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634

Query: 466 MFTDKMLQTLLEGVK 480
             +++++  L + ++
Sbjct: 635 EISNQIMNLLFDIMR 649


>gi|255322686|ref|ZP_05363830.1| flagellar hook-associated protein FlgK [Campylobacter showae
           RM3277]
 gi|255300247|gb|EET79520.1| flagellar hook-associated protein FlgK [Campylobacter showae
           RM3277]
          Length = 617

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/441 (13%), Positives = 131/441 (29%), Gaps = 27/441 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + +  +   +  + A  Q  +   NI NAD+++Y R+  + +                 V
Sbjct: 4   IFSSLHIGVSGLDAAQTQITTTGHNITNADSEHYTRQRVVQSAREPFHDMPGDIGTGTKV 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T    +       L   +  +      +            D  +      +    ++  
Sbjct: 64  DTVVRVHDEFTFARLRTSNINLESSEYKKQILEEISQRF-PDLQSVGIGRDLQNYFNAWN 122

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N +E      ++++A  +  + N +   + KI+ D D +IE+ ++ + ++  ++  
Sbjct: 123 NLASNPTEGSQKVNLLNSAATLSNSINKAHDMLTKIQKDVDSQIEVAVNEINKYAKQIAQ 182

Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I    +     A+D  D+RD L   +S+I GIS          +  +      +  
Sbjct: 183 INKEIVRVESVGTTRANDLRDKRDQLELAMSKIAGISVFKGQLQSNNIDPTVTDMGTKHQ 242

Query: 232 PRDINFEKMNSYTVTSESNPIFID-----------GVVVSSNQGSAVPKGKIKALLQIRD 280
                F  ++  T    +     D                 +    +  GK+ A L +R 
Sbjct: 243 INISGFNIVDGTTYHPLTVDRISDKSDFKGVFFERDDSKKVDLNGRISGGKLGAALDLRG 302

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN----KLCQGISE 336
             V       D   +  I + +       N  N      A      D        + +  
Sbjct: 303 RRVDDNGEFQDGTIQKYIDNLNTFAKGIINETNNIYARSAVENAVTDELDGLSDSRTLMN 362

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                     +     + G    +   N+       D         + N   D     N+
Sbjct: 363 FNDDIKHGSFDVVVYNNQGQEVARKTININASTTINDNTRGNSIVRDFNSDTDDNGDNNS 422

Query: 397 NVTLLEYARNSIGWLEKNRSD 417
              + +Y + +  +       
Sbjct: 423 LNDVDDYFQANYQYDATTGKG 443



 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 132/422 (31%), Gaps = 25/422 (5%)

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH--YISKLRDSLESYSKNL 118
           ++F   L +++       +    +      +  D     P     IS   D    + +  
Sbjct: 219 SVFKGQLQSNNIDPTVTDMGTKHQINISGFNIVDGTTYHPLTVDRISDKSDFKGVFFERD 278

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               +      +  ++    +   R V       D  I+  I NL  F   +    + I 
Sbjct: 279 DSKKVDLNGRISGGKLGAALDLRGRRVDDNGEFQDGTIQKYIDNLNTFAKGIINETNNIY 338

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            ++A ++      D+ D L    + +     I   + D+VVY + G  +           
Sbjct: 339 ARSAVEN---AVTDELDGLSDSRTLMNFNDDIKHGSFDVVVYNNQGQEVARKTININAST 395

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
            +N  T  +            +S+         +  +     +              V  
Sbjct: 396 TINDNTRGNSIVR------DFNSDTDDNGDNNSLNDVDDYFQANYQYDATTGKGTFGVTA 449

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              + +  +A   +      I    +  +        + + V  +   NP  L+   + +
Sbjct: 450 KRNAGEYSVAFVDKGTNFPGIIGVNRVFEGGNA----KNMSVKSELMENPHKLKAYSNPT 505

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                      G  ++ N       K  IF      +   ++  Y R     L      +
Sbjct: 506 P----------GNNEVANDMVQMQYKKIIFYSDKHADKEESVEGYYRYITTDLASQTQTN 555

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +DL+  +  +       Y +  GVNL EEL+ LI+ + SY  + K+I   +KML TLL  
Sbjct: 556 NDLNDANTAIHKVAMSEYQSVSGVNLNEELTNLIRFQSSYGAAAKIITTVEKMLDTLLTL 615

Query: 479 VK 480
            +
Sbjct: 616 KQ 617


>gi|329895981|ref|ZP_08271239.1| Flagellar hook-associated protein flgK [gamma proteobacterium
           IMCC3088]
 gi|328922062|gb|EGG29425.1| Flagellar hook-associated protein flgK [gamma proteobacterium
           IMCC3088]
          Length = 1003

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 116/341 (34%), Gaps = 17/341 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +    +   +  N   Q  A+   NI N + + Y +++   T S                
Sbjct: 1   MSDFLSIGASAINVYRQAIATTSNNISNVNTEGYSKQEVKITESYPTQIANYYLGTGAFT 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + +       ++ L   +S +        +      +   +  N    + I    ++ +
Sbjct: 61  GSVQRSYDEFVERSLRDSASDLDATTPFIEYTQRIVDIMGSETSN--LANAIDAFFNANQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             S   +   L   V+++  E+   FNT + +V  + A++  ++   +S +     +L  
Sbjct: 119 LLSVEPASIPLRNEVLNSGSELASRFNTLSAQVDSVAAESKAKVNSTVSQINGLADQLLA 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---GTTLFE 229
           VN  +  K+         +DQRD++L+K++ ++ I     +N ++ V       G    +
Sbjct: 179 VNKQLGRKSDVTKQPPQLMDQRDLILRKMASLVTIGVNESDNGEVSVNLGGPGRGFVFVD 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +          +S   +S+   +                  ++  LL  R  VV + ++ 
Sbjct: 239 SRGTQRVGIANDSADPSSDVQLVLDPRGKKQPIPVLNGG--ELGGLLAFRSEVVAVVRDG 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           LD +A     + +E      +     G  +       D   
Sbjct: 297 LDHLAVEFAANVNETHRQGVDLRGSFGGDVFSIAPSYDIST 337



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/430 (9%), Positives = 109/430 (25%), Gaps = 17/430 (3%)

Query: 43  TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNN 98
              +    +    +S      D  +   +     +RL+   + +   +  +    +   +
Sbjct: 550 FNTTAAYSSAYLNKSGTDAYLDNAIRLGAIGFRTERLVDQIDPITGSLITESVAFEAAIS 609

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           S    I +                L    +           ++A   + +  +AD+    
Sbjct: 610 SGAIPIYENTSGASEDYIADGTLSLNGNALGPLTLTNGEVLSAATVKEWLTDEADRLGIS 669

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           +++        +  ++ +   +   +  + D       ++  I+     + +        
Sbjct: 670 DVTIEASNTLIVNEIDPSKTLEINGESISFDPSVTMAEMVDIINASTNDTNVRAEWLSDS 729

Query: 219 VYT--------SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
            +          +   L  T            YT            V ++   G     G
Sbjct: 730 SFKLVNAAGHAGENIVLGGTDSTTALNLSTGVYTGRFSIASAEQSEVALTIASGQPSDMG 789

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           ++     I        +  +       +G+      +    +    L  A    +   + 
Sbjct: 790 RLGFYTGIYSDQPLNEELAVFVTGTGAVGASITNSRMTAAEDTEQQLPAAPYKLNFTAES 849

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              I++             + +          +  K   G    +         N     
Sbjct: 850 VYTITDIATDTVVATRAFEYGKPIEYRGTSISFEAKPSKGDEFFVEANSSPAGNNKNLLA 909

Query: 391 VAG-----INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
           +       I +  T  E   + +  +      S       +VV++    S     GVNL 
Sbjct: 910 LMEWSKRPIISGQTFTEAYLDLVTGVGSRSEMSELRQEALKVVYDQAYNSREQASGVNLD 969

Query: 446 EELSFLIKVE 455
           +E + LI+ +
Sbjct: 970 DEAANLIRFQ 979


>gi|167623361|ref|YP_001673655.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4]
 gi|167353383|gb|ABZ75996.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 453

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 110/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +  ++A +   +   NI N +   +                          V  
Sbjct: 2   SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++++        F      + + DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSMAFTNNSLDMAINGGGFFVTSSEVGSQDHS----YTRAGAFKFDSNNYI 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+ + VQ             +       +  + ++ 
Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGSPVKTDSVGIQMNLNAGESTLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D      S  + I   +   + +  Y               
Sbjct: 178 -------------AAFDPDDPDTFNNSTSVTIYDSLGEPHILTSY------FVRPPNAAH 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E         +  P+ +D      N  +            +               A 
Sbjct: 219 TGESNWVAFYAVDGKPVDLDPAAGEYNVDTD-------GDGTVDGKANAENAAGWKGAAV 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               + +         +          +        Q ++       QY S         
Sbjct: 272 SFNDTGAYTGSNPAVIKTEALGVGGANVLGPGADGTQTLTLDFNNPTQYASPFEVTELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGN--TSWKASLD 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|113969606|ref|YP_733399.1| flagellar hook protein FlgE [Shewanella sp. MR-4]
 gi|113884290|gb|ABI38342.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-4]
          Length = 453

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 121/483 (25%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             ++              
Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D         + I   +   + M  Y           P + 
Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           ++   N++      +   +D   VS   G+               +       +   +  
Sbjct: 217 SYNGENNWVAYYAIDGKQVD---VSGPAGTYQTDTNGDGTADGTGTAQTTGGWKGSVLKF 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +G ++  DP    +E +            D      I        QY +  +      
Sbjct: 274 NSVGVYTGSDPAVVTTEALGVGGAGVLGPGADGTQDVTIKFNA--PTQYSAPFAATELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLE 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  IS S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEPNSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|52841457|ref|YP_095256.1| flagellar hook-associated protein FlgK [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628568|gb|AAU27309.1| flagellar hook associated protein 1 FlgK [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 649

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 126/413 (30%), Gaps = 23/413 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54
           ++ N A +  N   +       NI N   + Y R+              +     V+V +
Sbjct: 2   SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPITSNRYAGSYIGAGVSVAS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +  + +  S   Q     +     + + + D   +S +  +    DS+   
Sbjct: 62  IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +           V+  ++ + Q FN+   ++++   ++  ++   +  + R   EL  VN
Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQLTESVKIINRITKELAEVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       ++  + LD RD LL+++S    +S   + +  + V  + G  L     + 
Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQR 235

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         +      G     +    +  G +  L+    +V+      + +MA
Sbjct: 236 DLL-VGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS------NP 348
             L  +F+ +  +  +  +  G             L +  +          S      + 
Sbjct: 295 IGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQ 354

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
             L D   +      N   L    D  +      +          +   +T+ 
Sbjct: 355 VKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTIT 407



 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 105/375 (28%), Gaps = 17/375 (4%)

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D     +   ++ + Q     A+                  +     +    +       
Sbjct: 277 DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTAS 336

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +   A   ++  D+   K+S+   I +    N   ++  SDGT+   T          
Sbjct: 337 ADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSP--PAP 394

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +  V  +   I ++ +   +N           A       +   ++  L    +     
Sbjct: 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASL 454

Query: 301 FSEKDPI---AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            +                           D +              +   P+        
Sbjct: 455 NNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFIPNTNNVIQIP 514

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI------------NTNVTLLEYAR 405
                     L+G P   + +   +N     D   G+            N + TL +   
Sbjct: 515 DGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGSETLFDRYG 574

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N +  +    + +      + ++     +   +  GVNL EE + L+  +Q+Y  + KL+
Sbjct: 575 NLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634

Query: 466 MFTDKMLQTLLEGVK 480
             +++++  L + ++
Sbjct: 635 EISNQIMNLLFDIMR 649


>gi|32476538|ref|NP_869532.1| flagellar hook-associated protein [Rhodopirellula baltica SH 1]
 gi|32447084|emb|CAD76893.1| probable flagellar hook-associated protein [Rhodopirellula baltica
           SH 1]
          Length = 584

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/471 (12%), Positives = 135/471 (28%), Gaps = 34/471 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L     +++   + A      +  NI NA+ + Y+R+    T +             V
Sbjct: 23  MGLFGTIQQSKGALDAAQIGLQVVGNNIANANTEGYIRQRLEQTPAVAYRQGNLIQGHGV 82

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                         + +    +A      L S     E +   D          S   ++
Sbjct: 83  RATGVVQVIDQQLAERMFNAKTAAAGADSLSSAYGQLETL-ITDLDGGGLNEQFSLFNNA 141

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L   S   ++    + VI   E +  +         +++   + E++   + + R    +
Sbjct: 142 LHDLSTQPNDAATREFVIIQGEALATSMKQIRTRAGELQDGWNAEVDEAATQINRLTERI 201

Query: 171 TVVNDAIKFKTASKH---DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N  I           DA    DQR   L++++  + I+   + + ++ V+      +
Sbjct: 202 AQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASGNVSVFVGGDYLI 261

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +   R++     ++Y   +    + I    V ++       GK+ A ++ R  V   + 
Sbjct: 262 ADGNRREV----YSAYDEDAGGLEVRI----VDTDAPLKAKGGKLGAAIEARGGVFGDYV 313

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---------KLCQGISETI 338
             LD+MA  LI   +              L  ++  +                      I
Sbjct: 314 ENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSFDFNI 373

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   + + +      +         +A    +            +        +  
Sbjct: 374 VDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSATSKF 433

Query: 399 TLLEYARNSIGWLEKN---RSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
           T  E     +     N      S      + VV + I     +  G+N   
Sbjct: 434 TFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNGGINADT 484



 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/411 (9%), Positives = 109/411 (26%), Gaps = 17/411 (4%)

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           A +        +         +       +  T    +    LE  +  ++ +   +   
Sbjct: 190 AATQINRLTERIAQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASG 249

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIEL-EISNLRRFLSELTVVNDAIKFKTASKHDA 187
           + +  V  ++  +    +++ +  D++    E+  +                  A     
Sbjct: 250 NVSVFVGGDYLIADGNRREVYSAYDEDAGGLEVRIVDTDAPLKAKGGKLGAAIEARGGVF 309

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
            D+++  D +   +   +                    T    VP +           + 
Sbjct: 310 GDYVENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSF 369

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           + N +   G ++S+ + +    G I                 +            + D  
Sbjct: 370 DFNIVDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSA 429

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                             L+       +  I VN   + +   L                
Sbjct: 430 TSKFTFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNG----------G 479

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +    + + +  D  ++            N ++      +I  L +  S           
Sbjct: 480 INADTNTLYNLLDIVDEPLDEL------GNRSIRGMHEQAISTLGREISVQKSATDGLND 533

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++  +   +    GVN+ EE   +I  ++++  S+++I    +ML  LL  
Sbjct: 534 LYASLQSQHLAITGVNIDEESIKMISYQRAFQASSRVISTAAEMLDILLAI 584


>gi|224373490|ref|YP_002607862.1| flagellar hook-associated protein FlgK [Nautilia profundicola AmH]
 gi|223589300|gb|ACM93036.1| flagellar hook-associated protein FlgK [Nautilia profundicola AmH]
          Length = 727

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/429 (12%), Positives = 129/429 (30%), Gaps = 36/429 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M++   F+ A                NI NA N +YVR   + +               V
Sbjct: 1   MAISTSFSTALTGLKAHQTAIDVTSNNISNASNPDYVRERAVFSTLNPINSIPGDIGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +              + S+        + +          D  +N     +    ++
Sbjct: 61  QISSIYRITDTFLFNRYTSTSATFANLDTQEQYLKEIATYF-PDVTDNGLYKDMEDFFNA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            ++++ N ++  +   +    + +  N  T   +++ I+   +  +  +++     + ++
Sbjct: 120 WQTFASNPNDGAVKVDLAAKTQALADNIKTLKGKLEDIQKSINDSLNSKLTEANNIIKQI 179

Query: 171 TVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +N  I    A+   +A++  D+RD L +++ E++ +              +  T   E
Sbjct: 180 AELNKEITAHEANNESNANELRDKRDALEKRLKELLDVKVFKSGVTSQDAQGAVTTDYEE 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS---------NQGSAVPKGKIKALLQIR- 279
                +    +   +   E +   + G  +           +   +V  G+I ALL +R 
Sbjct: 240 DYQISLGGYPLVDNSTYHELSIESLSGNPMIGIEKQDYSVVDITKSVTGGEIGALLNLRG 299

Query: 280 ----------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                     +  +      LD +A  LI S +     +        +  +      D  
Sbjct: 300 TDFDKEGNPTNGTLGNLMTSLDSLANGLIRSVNSIYSYSAQESVETDVISSPNTISPDLT 359

Query: 330 L----CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                    +  I  +P    N          +      +K      D IN    + N  
Sbjct: 360 DVSLSSLYNNYKILKSPVRDGNLILNVYDDQGNLNTATEIKVAVSADDSINDVIQNINNE 419

Query: 386 FIFDPVAGI 394
                +  +
Sbjct: 420 LTNAGITDV 428



 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 138/439 (31%), Gaps = 22/439 (5%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           +P N T+    +   ++ + ++ + +S             +    +         +  +S
Sbjct: 307 NPTNGTLGNLMTSLDSLANGLIRSVNSIYSYSAQESVETDVISSPNTISPDLTDVS--LS 364

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQ-NFNTSAREVQKIRADADKEIELEISNLR 164
            L ++ +     + +  L   V D+   +        A        D  + I  E++N  
Sbjct: 365 SLYNNYKILKSPVRDGNLILNVYDDQGNLNTATEIKVAVSADDSINDVIQNINNELTNAG 424

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST---IVRNNNDMVVYT 221
               E  +VN  +KF  +S       +  +D   Q  + +  I        N+  + +  
Sbjct: 425 ITDVEAKLVNGQLKFVNSSDSSETSKILVKDDGAQLFTALNQIEYQPLNQVNDTQLPLPL 484

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            +G         D N     + TV  +S       +          P         + + 
Sbjct: 485 KNGDFDIVVYDSDGNAIAKRTITVNMDSKDPKYSTIE-GILAQINTPGIDDNGDNNLNND 543

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
           V   +Q +      +L     +   +  +++N          K  D          I + 
Sbjct: 544 VDDYYQAEFINGKLILSKKTDQNTYVGLDNDNADFGGAFGINKFFDGNNA----SNIQLR 599

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            + + +PS ++           +    +G   + N        N  F  V G   + T+ 
Sbjct: 600 QELQDDPSLIK----------ASKTPNSGDNTIANSVLQLQYDNINFY-VNGKTQSNTIY 648

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
            + R     L             +Q +   IS  Y +  GVN+ EEL  L + ++ Y  +
Sbjct: 649 GFYRGLTADLANQTQIVSSKKESTQTLLTSISNEYYSLSGVNIDEELVNLEQYQRGYQAN 708

Query: 462 NKLIMFTDKMLQTLLEGVK 480
            K+I   ++ML  L    +
Sbjct: 709 AKVITTINQMLDALFSIKQ 727


>gi|292492363|ref|YP_003527802.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus
           Nc4]
 gi|291580958|gb|ADE15415.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 425

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 120/483 (24%), Gaps = 70/483 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------Q 55
            FN + +  N AS     +  NI NA+   + R            +  +           
Sbjct: 2   SFNTSLSGLNAASSDLDVVSNNIANANTTGFKRSRAEFADIFAVSSFGSPKTAVGSGVLL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L    + +      + F AL   ++ ++               + + Y 
Sbjct: 62  NRAAQQFDQGNLDFTQNILDLAVSGRGFFALSPNLTNNEL----VYSRAGAFSINKDGYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +   L    ++    V  +   S++ V+   +    +   ++S      ++   ++ 
Sbjct: 118 VNGAGQFLRTYPVNQDGTVTASSLESSQPVRLPTSAGTPQATSQVSIGANLPADAASLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D      S    +   + N++   +Y      + +T   + 
Sbjct: 178 -------------ANFDPLDADTFTASTSTTVFDSLGNSHISTLYF-----VKDTNSPNQ 219

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                         +        +     +    G +                       
Sbjct: 220 WAVYNALDGALVNVSGGTAGAGGIQYGTLNFDSSGGLMGT-------------------- 259

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                              P +     + +  N +   ++       Q  S  +      
Sbjct: 260 ----------------TPSPLVTDPIVLGNGANDMTLTLNFPSTNTTQVASPFNVTALDQ 303

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      +++    +  ++ +  N       +A       L +   N   W     
Sbjct: 304 DGFTSGRLTGLDISETGVIRANFSNGQNLALGKVALAQFPNEQGLRQLGNN--SWAGTID 361

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +          F  I      +  V+L  EL  LI  ++++  + + I     +  ++
Sbjct: 362 SGAAIAGEAGNGSFGLIQGGALESSNVDLTAELVHLITAQRNFQANARAIETASTLTDSI 421

Query: 476 LEG 478
           L  
Sbjct: 422 LNI 424


>gi|170725961|ref|YP_001759987.1| flagellar hook-associated protein FlgK [Shewanella woodyi ATCC
           51908]
 gi|169811308|gb|ACA85892.1| flagellar hook-associated protein FlgK [Shewanella woodyi ATCC
           51908]
          Length = 637

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 121/408 (29%), Gaps = 21/408 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +  + N A+     +  Q A    NI NA+ + Y R+    +                
Sbjct: 1   MGM-DLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLDNQRLGGNFFGSGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +   +    +   + L    + + + +  Q      + + +      S    ++ L   
Sbjct: 60  YISDVKRIYNDYAARELRIGQTTVSEAQATQIKMGELDQLFSQ--IGKSIPQGLNDLFAG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L S +    +  +   V+ +A  +  + N     +       + +I      +    +EL
Sbjct: 118 LNSLADLPDDIGIRNNVLGSAGHLASSLNQMQAHLDGQMKQTNDQIAGITDRINEIGNEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +        +    LD++D L+Q++S+   ++ I  +     +       L   
Sbjct: 178 GHINRELMKSQ---GEDMSLLDKQDALIQELSQYSQVNVIPLDTGAKSIMLGGAVMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                              + +       +     +   G++ AL + R+  +   Q ++
Sbjct: 235 EVSMAIGTTAG--DPFPNESRVTSSAGAQTLIIDPSQMGGQLGALYEFRNETLVQAQLEV 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A  +  +F++      +     G  I   I D D  + +             +N   
Sbjct: 293 GQLALGVADAFNQAQSQGFDLSGALGQNIFTDINDPDMAVGRVGGFGTN---TGNANLRV 349

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
             D  S      +++   A     +             +       + 
Sbjct: 350 NIDDTSALTGGSYDLTFTAPGTYELTDINTGVVTPLTLNGSQLDGGDG 397



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/412 (10%), Positives = 113/412 (27%), Gaps = 23/412 (5%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +M      + +          +    + +     L         ++   +      + + 
Sbjct: 229 VMLVSGEVSMAIGTTAGDPFPNESRVTSSAGAQTLIIDPSQMGGQLGALYEFRNETLVQA 288

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           + +  +          +  S+   ++ A+     +  +  D    R       +    + 
Sbjct: 289 QLEVGQLALGVADAFNQAQSQGFDLSGALGQNIFTDINDPDMAVGRVGGFGTNTGNANLR 348

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
             + + + +   T     L  T P       +N+  VT  +            +      
Sbjct: 349 VNIDDTSAL---TGGSYDLTFTAPGTYELTDINTGVVTPLTLNGSQLDGGDGFSIHIDSG 405

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                   +IR S       +++      I +   K      +     + I    ++  N
Sbjct: 406 AFVDGDKFEIRPSAGAAAGIKVEMTDPKGIAAAGPKITAGTANSGNTEIEILSIDRNNVN 465

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN------------ 376
               G   T  ++P   +   F   G  VS    +    +       +            
Sbjct: 466 LPLTGSELTYQIDPVANTFTVFDASGTLVSAAAPYTPPTITSNGFSFDVNTTSTSTESFT 525

Query: 377 --------HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                      ++ +   + +     +   TL +    +   +      +      ++ V
Sbjct: 526 FDFTFAEGDNSNAVSMAQLSEAKLMNSGGSTLTDVYEGTKLVVGGKAKAASVAVGSAEAV 585

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F        +  GVNL EE   LI+ +Q+Y  S +++    ++  TL   V+
Sbjct: 586 FTQAYNRVQSESGVNLDEEAGNLIRFQQAYQASARIMTTASEIFDTLFSSVR 637


>gi|118444200|ref|YP_877983.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT]
 gi|118134656|gb|ABK61700.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT]
          Length = 485

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/493 (8%), Positives = 112/493 (22%), Gaps = 23/493 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSENK 60
           +L       +       +      NI N     +                  V       
Sbjct: 1   MLRSMYAGISGMKVNQTKLDVTGNNIANVSTTGFKSSRVRFKDMLSQNMGEAVGPGRNQG 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQS--FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
            +  K +       G   ++     +     +                L +S        
Sbjct: 61  GVNGKQVGLGVQVAGIDTVMSQGMMQPTSRNLDVAMDGTGYFIVAKGALPESNAGGIAVS 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL----RRFLSELTVVN 174
             +                  T   +   + +D  + +   I+                N
Sbjct: 121 ESEHTMSGGAFQVNYTRDGSFTLDHQGNLLTSDGYRVMGYAINEKDSTGNATGDVSIDYN 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +            ++  +I + + +    ++  +M++   D           
Sbjct: 181 ANGAVNFVNADGEFGLKASNTLVPLRIPDSVHMKATTKDKQNMIITNGDKILFDNDGDAT 240

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              +     ++         + V V     +    GK K  +   +      +    E+ 
Sbjct: 241 NGIQGFPEISLDDTFKG--KENVKVEIKYDTKDKAGKDKGWIIFLNGKKTFLEANASEID 298

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              I         A   +++  L     I   D        +T     +Y+ + +     
Sbjct: 299 DAAIDGVDAALLSASEKKDIKELLNGSKITITDPDPNTTNIDTDDKKAKYKWSFTL---- 354

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     +     D           A       L +  +N       +
Sbjct: 355 -QPECDKKLRSFAIEKDGLVKGVLDDGTVTALGQIATASFKNQEGLKKEGKNLYSNTANS 413

Query: 415 RS-------DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                     +          +  + +       V+L E+ + +I   +++  S K+I  
Sbjct: 414 GVPTVRSGLGTPKNLDNGDG-YGEMLQGMLEMSNVDLAEQFTDMIVTTRAFQASGKMIST 472

Query: 468 TDKMLQTLLEGVK 480
            D++LQ ++   +
Sbjct: 473 GDEILQDIINLKR 485


>gi|260888523|ref|ZP_05899786.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC
           35185]
 gi|330838173|ref|YP_004412753.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC
           35185]
 gi|260861720|gb|EEX76220.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC
           35185]
 gi|329745937|gb|AEB99293.1| flagellar hook-associated protein FlgK [Selenomonas sputigena ATCC
           35185]
          Length = 571

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/427 (11%), Positives = 124/427 (29%), Gaps = 21/427 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVTVVTQR 56
                N      ++  NI NA+ + Y R+      +                 V   +  
Sbjct: 2   VRGIYNNQLSLDTVGHNITNANTEGYSRQRVNPAATRPLEQGGMFGGLFVGTGVDSESLT 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                  DK      +     +  Q      E +  +D       + + K   +    S 
Sbjct: 62  RARDFFADKQYWQEEATESYAKYRQKNYDKIEAVF-NDSKTKGLQNAMHKFYSAWNDLSV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S+     +V+++ ++       SA+ VQK      +E++ ++ ++     ++  +N  
Sbjct: 121 YASDPAKRVSVVESGKQFADRLEESAQNVQKQLDLVYREMDTQVKDVNEITQKIVELNKN 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I    A+   A+D  D+RD+L+ K+S  + +     +N    + +   + +      ++ 
Sbjct: 181 ISLAEANGAMANDLRDKRDLLVDKLSGYMSLHVYEMDNGMYQIVSGGASIVNGISRLEL- 239

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
             KM+               +   +N       G ++A +         + ++L  +A  
Sbjct: 240 --KMDGPVENKRYGVNDYSLIFKDTNTLFVPGNGTLQAAVDSIKED-KAYMDKLANIAAT 296

Query: 297 LIGSFSEKDPIAG--NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            +  F+++       + +    L              +  S          S  +     
Sbjct: 297 FMTQFNDQHRAGAGIDKDKTSNLNFFGRNDKYYVWDKERQSLLAAKVTGTGSTTAGSPPV 356

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            + +        +      L        +   +              + +     +++  
Sbjct: 357 TTHTTTLSTTPGDTEELQGLEIIKAMKVSAELVTQNGELKVAARGFGDNSDAKNSYVQNF 416

Query: 415 RSDSHDL 421
              +  +
Sbjct: 417 SYSNSTV 423



 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/382 (11%), Positives = 104/382 (27%), Gaps = 9/382 (2%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ---NFNTSAREVQKIRADADKEIE 157
              ++           +     +   V +    + Q      +    + ++    D  +E
Sbjct: 187 NGAMANDLRDKRDLLVDKLSGYMSLHVYEMDNGMYQIVSGGASIVNGISRLELKMDGPVE 246

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
            +   +  +       N        +   A D + +    + K++ I        N+   
Sbjct: 247 NKRYGVNDYSLIFKDTNTLFVPGNGTLQAAVDSIKEDKAYMDKLANIAATFMTQFNDQHR 306

Query: 218 VV--YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                  D T+      R+  +   +    +  +  +   G   + +         +   
Sbjct: 307 AGAGIDKDKTSNLNFFGRNDKYYVWDKERQSLLAAKVTGTGSTTAGSPPVTTHTTTLSTT 366

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
               + +  +   +  +++  L+    E    A              +++          
Sbjct: 367 PGDTEELQGLEIIKAMKVSAELVTQNGELKVAARGF-GDNSDAKNSYVQNFSYSNSTVPP 425

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                     +           +   L N+ N+      +  Y +               
Sbjct: 426 NITGTGTVVHTTSDMNGTADGSNAVLLTNIFNMEQKDTGLTIYKN---PTAGSPTETRPT 482

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
             V+L  Y  +    L  + +         Q V   I    ++  GVN  EELS +IK +
Sbjct: 483 GTVSLNNYYNSVTSALGIDSNAMDTKVKFQQDVMTQIEAWRTSVSGVNWNEELSNMIKFQ 542

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           Q Y+   + +   D+ML  L+ 
Sbjct: 543 QGYSACARCMTTMDEMLDRLVN 564


>gi|328542111|ref|YP_004302220.1| flagellar hook-basal body protein [polymorphum gilvum SL003B-26A1]
 gi|326411861|gb|ADZ68924.1| Flagellar hook-basal body protein [Polymorphum gilvum SL003B-26A1]
          Length = 545

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/546 (11%), Positives = 141/546 (25%), Gaps = 70/546 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVT 54
           MSL    +   +         ++I  NI N +   Y    T+ +               +
Sbjct: 1   MSLFGALSTGVSGVIAQGSSLSTISNNISNLNTPGYKGSRTLFSHMVTGGGRPGTPVSGS 60

Query: 55  QRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
             S  +        +   S       + + F  + +         +      S   ++ +
Sbjct: 61  VASLDQRDLTAQGAIINTSRPADLALVGKGFFVVTDSPF-VGPETSYFYQRTSSFSENTQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-------ISNLRR 165
            Y  +     L     D + E++   +  + E+Q  R +A    EL+       +  +  
Sbjct: 120 GYLVSSQGLHLQGWRTDASGEIINPASVESIELQSSRIEATATRELKMGINLTPVEGVYA 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             +  T+++             +              ++         N+     +++G 
Sbjct: 180 LETGSTLLSQLETIAGDLNTADYSVATSLFDAQGNRRDVDVFFMKAGANSWRWAMSTNGA 239

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG--------------- 270
            +F                   + +     G  +       VP G               
Sbjct: 240 NIFGGSAGSPEIIGSGDLRFNDDGSLKSYTGSNLDIAWTGGVPVGDISVNFGSATGGADF 299

Query: 271 ---KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
               I   L+  D ++ +  N     A  ++      + +  N   +     +     + 
Sbjct: 300 DPASITGDLEFSDGIIDLTLNDRHSNAPAVLAGSYTVEAMGANVLQITEPDGSTFTATVP 359

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                    T         +P +      +       V   +G     +      +    
Sbjct: 360 ADAAIR-QITFGNGVTMTLSPQWTYPAAGLLGTIDATVVEPSGNGSGADGIVQYASTYNT 418

Query: 388 FDPVAGINTNVTLLEYARNSIGWL-----------------------------------E 412
           F+ +        L E++ +  G++                                   E
Sbjct: 419 FNILQDGLAPGVLREFSIDEQGFVIGSYTNGGTRKLWKVAVAIFQDPNGLELVSGGLLRE 478

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             +S               I+ S      V++  E S +I  ++SY+ S K+I   D+ML
Sbjct: 479 AEQSGRPFFREAGTSGTATIAPSSIEQSNVDIGTEFSNMIVSQRSYSASTKVITTVDQML 538

Query: 473 QTLLEG 478
             L+  
Sbjct: 539 NELMNI 544


>gi|307293781|ref|ZP_07573625.1| flagellar hook-associated protein FlgK [Sphingobium
           chlorophenolicum L-1]
 gi|306879932|gb|EFN11149.1| flagellar hook-associated protein FlgK [Sphingobium
           chlorophenolicum L-1]
          Length = 446

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 151/492 (30%), Gaps = 61/492 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +  +F    +         A++  NI NA  + Y RR   T  S                
Sbjct: 1   MSDLFIIGASGTKAYRTAMAAVSENIANASTEGYSRRSVTTVESGSSTATMAVYISRANF 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               V +         D  +   ++ +G       +  L +  +A +         ++ +
Sbjct: 61  GGTDVKSVNRSTDPYLDATVRYTNTQLGSAVARMRW--LTDSETALNDTETGVGQLMTGM 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +++  + + ++  L  T +D+   V Q F  +A ++ ++ +    E +  ++ + + L
Sbjct: 119 FQNMDKLAASPNDKSLRVTTLDSISRVAQAFKQTAADLTQVSSGIATEAQASVTTINQAL 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           S L  +N+++             LD RD  L  +S  + I      ++   V  +  T +
Sbjct: 179 SALADINNSLLRAQPGTSAYAQLLDSRDAALGTLSSNLNIDVSFGAHDQAQVTLNGQTLV 238

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                  +      + T++             +    +A   G +  L    D+V    +
Sbjct: 239 QGDSATPLALTVNANGTLSLT---------TSAGAALAAPASGTLGGLFSAADTVTQR-R 288

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             LD +A+  + + +                                            +
Sbjct: 289 ASLDTLAQQFVANMNNWHAQGLT----------------------------------DGS 314

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P                   ++    L     D      +      +  N ++ +     
Sbjct: 315 PGAAGAALLSGTSAATVTALISDPAQLAVKSSDGTANGNLLTVSTALRGNGSVEQGWTAL 374

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           I       S +      +Q   +    +     GV+L  E + L++++Q+Y+   K++  
Sbjct: 375 IATHANLLSSTKAEQTTAQSRSDQAVAAREAVSGVDLDMEAADLLRIQQAYSGCAKILQV 434

Query: 468 TDKMLQTLLEGV 479
             + +  +L+ +
Sbjct: 435 AKETVDAILQII 446


>gi|117919772|ref|YP_868964.1| flagellar hook protein FlgE [Shewanella sp. ANA-3]
 gi|117612104|gb|ABK47558.1| GCN5-related N-acetyltransferase [Shewanella sp. ANA-3]
          Length = 453

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/483 (11%), Positives = 121/483 (25%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             ++              
Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D         + I   +   + M  Y           P + 
Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           ++   N++      +   +D   +S   G+               +       +   +  
Sbjct: 217 SYNGENNWVAYYAIDGKQVD---ISGPAGTYQTDTNGDGTPDASGTAQTAGGWKGSVLKF 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +G ++  DP    +E +            D      I        QY +  +      
Sbjct: 274 NSVGVYTGSDPAVVATETLGVGGAGVLGPGADGTQAVIIKFNA--PTQYSAPFAATELSQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLS 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  +S S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEPNSGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|332284019|ref|YP_004415930.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7]
 gi|330427972|gb|AEC19306.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7]
          Length = 412

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/476 (9%), Positives = 109/476 (22%), Gaps = 69/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +  +  N A+Q    I  NI N+    +            +  V       S N+  
Sbjct: 2   GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKAGTASFADVYASSRVGLGTQVASINQRF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +    +         S      +    D   +       +     + Y  N     
Sbjct: 62  TIGSVSNTGNQFDMAIDGAS-----GLFRVTDPSGSVLYTRNGQFSPDKDGYLVNAQGHR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L              +      +  IR             +   ++     N  +     
Sbjct: 117 L------------TGYEEGGTNLVPIRVPTGNIAPAATGVVTSKVNVDA--NAPLAGGAD 162

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D         +  +       ++     +   + +   +       ++
Sbjct: 163 PSATPPVPAATFDPA-------VPSTYTHSLPINVYDSLGNSHQMMQYFAKREGTATSST 215

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           + V        +   +  + Q +    G++ A        +          A      ++
Sbjct: 216 WDVYYRIGGQTVSAPLDGATQMTFDQGGRLTAPTTPVAVQMTAVPGASPAEALNFTVDYA 275

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +     G+                                           G        
Sbjct: 276 DSTQFGGDFA--------------------------------------FSFGQDGYPTGE 297

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +A    ++  Y +   +      +        L     N   W+E + S    L 
Sbjct: 298 YASMAIAADGSIVASYTNGETQTMGSLVLVDFANVQGLQPVGGN--AWVETSTSGQPILG 355

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I         V++ +EL  +I  +++Y  + + I   D+++QTL+  
Sbjct: 356 RPGSNGMARIKGQAVEESNVDMSQELVNMIIAQRTYQANAQTIKTQDQIMQTLISM 411


>gi|121586274|ref|ZP_01676064.1| flagellar hook-associated protein FlgK [Vibrio cholerae 2740-80]
 gi|121549540|gb|EAX59566.1| flagellar hook-associated protein FlgK [Vibrio cholerae 2740-80]
          Length = 624

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 120/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ ++ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD   P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHSPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.2 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/397 (9%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
           +    +       S    I    D+ +     +    L      +    ++       E 
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 146 QK-IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
              +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 SPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|54297188|ref|YP_123557.1| flagellar hook-associated protein FlgK [Legionella pneumophila str.
           Paris]
 gi|53750973|emb|CAH12384.1| flagellar hook-associated protein 1 [Legionella pneumophila str.
           Paris]
          Length = 649

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/438 (12%), Positives = 134/438 (30%), Gaps = 17/438 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVT 54
           ++ N A +  N   +       NI N   + Y R+              +     V+V +
Sbjct: 2   SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +  + +  S   Q     +     + + + D   +S +  +    DS+   
Sbjct: 62  IYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQD--GSSISVPLQTFFDSIGQL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +           V+  ++ + Q FN+   ++++   ++  ++   +  + R   EL  VN
Sbjct: 120 NSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSALQVTESVKIINRITKELAEVN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       ++  + LD RD LL+++S    +S   + +  + V  + G  L     + 
Sbjct: 180 GKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVA-GTQQ 234

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +            +      G     +    +  G +  L+    +V+      + +MA
Sbjct: 235 RDLVVGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMA 294

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L  +F+ +  +  +  +  G             L +  +          S        
Sbjct: 295 IGLAQTFNAQHKLGMDMNSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQ 354

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             +S   L      A    LI     +                  +++    ++  L + 
Sbjct: 355 VKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTITVNDLSQL 414

Query: 415 RSDSHDLHMKSQVVFNHI 432
            ++ H     ++     +
Sbjct: 415 ANNDHYTLTPTRGAARDL 432



 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/398 (9%), Positives = 102/398 (25%), Gaps = 31/398 (7%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           +  +   + +  T       +    +     + +      +                  +
Sbjct: 252 FLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDM 311

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI---------VRNNNDMVVYTSDG 224
           N  I     +  ++   + +R       S    +S              +  +    ++ 
Sbjct: 312 NSQIGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANE 371

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L             +S      +  + IDG+ ++ N  S +       L   R +   
Sbjct: 372 LRLIRKSDGTSTTLTWSSSPPAPPAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARD 431

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
           +     D     L         +    +    L        ++ +           N   
Sbjct: 432 LALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVN 491

Query: 345 RSNPSFLRDGGSVSKKF----------------------LWNVKNLAGYPDLINHYCDSF 382
            ++ +       V                            +               +  
Sbjct: 492 VTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNAGGFGDNRNGL 551

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           + + I       N + TL +     +  +    + +      + ++     +   +  GV
Sbjct: 552 SLSNIQQNKIFSNGSETLFDRYGGLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGV 611

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           NL EE + L+  +Q+Y  + KL+  +++++  L + ++
Sbjct: 612 NLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFDIMR 649


>gi|238922534|ref|YP_002936047.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC
           33656]
 gi|238874206|gb|ACR73913.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC
           33656]
          Length = 617

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/473 (11%), Positives = 143/473 (30%), Gaps = 33/473 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPEN 49
           S     +   +  ++      +   NI N     Y R++                     
Sbjct: 3   STFFGLHIGSSALSSFQVATNTTANNIANVKTTGYTRQEATLQAKDAINVTARYGSVGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-NSPTHYISKLR 108
           VTV + + +    +D     ++S  G+      +    +    D+  +    +   S++ 
Sbjct: 63  VTVTSIKQQRDLYYDNKYWENNSCYGRYEQKLYYMEQIQNYFKDNGSSVKGFSSVFSQMF 122

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
             L++     S+  +    I +A+ +   FN  +  + K++ D ++EI   +  +     
Sbjct: 123 SDLDTLRSKPSDKTVRNQFISSAQSLCTYFNQMSDNLSKLQDDCNEEIRNNVDKINSISE 182

Query: 169 ELTVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           +++++N  I      +  +A    D+R  L+  +S+I+ +S       +       GT  
Sbjct: 183 KISLLNKEINQIETGTGVEASSLRDERANLIDSLSKIVNVSYNETEVQNTNGDNLGGTNF 242

Query: 228 FETVPRDI-------------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
              +  +              + +  N+ T   +   I+ +   +  +  +    G +KA
Sbjct: 243 SLYINGEKVVEGKDYRKLICESSKTKNNQTDNDDMYKIYWEDTKMEFSATAGTAGGSLKA 302

Query: 275 LLQIRDSVVPI------FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           L ++RD            +     +        + K     + +    +       D   
Sbjct: 303 LFEVRDGDNLENFKGKVTKADSYSLTVENTSIDNIKSLNLPDKDGKITVNNISYSYDSWE 362

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                      V      + +      +V++ +L N  +      +  +          F
Sbjct: 363 AQVDAQGNIKSVTFNLSKDKAIADPEKTVAEGYLLNAGSAINARGIPYYMTQLNEFVRNF 422

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +     +            + E   + +          ++ + +  + T+ 
Sbjct: 423 SEMFNQIESKGQNLNGDTPPTFFEAITNTAKVYDFSESEAYSKLPDGQTATIN 475



 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/428 (13%), Positives = 130/428 (30%), Gaps = 11/428 (2%)

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           ++ +K ++   +  G +      E    + S     N S      +  +       N S 
Sbjct: 185 SLLNKEINQIETGTGVEASSLRDERANLIDSLSKIVNVSYNETEVQNTNGDNLGGTNFSL 244

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            I G+ V++  +       +S  +  +   D   +I  E + +    +  T         
Sbjct: 245 YINGEKVVEGKDYRKLICESSKTKNNQTDNDDMYKIYWEDTKMEFSATAGTAGGSLKALF 304

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                D  +    +       S  +  ++I    +  +       T+        ++E  
Sbjct: 305 EVRDGDNLENFKGKVTKADSYSLTVENTSIDNIKSLNLPDKDGKITVNNISYSYDSWEAQ 364

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-VVPIFQNQLDEMARVLIG 299
                  +S    +      ++    V +G +       ++  +P +  QL+E  R    
Sbjct: 365 VDAQGNIKSVTFNLSKDKAIADPEKTVAEGYLLNAGSAINARGIPYYMTQLNEFVRNFSE 424

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ-----YRSNPSFLRDG 354
            F++ +    N          + I +         SE     P        S+ +     
Sbjct: 425 MFNQIESKGQNLNGDTPPTFFEAITNTAKVYDFSESEAYSKLPDGQTATINSSSNTYYRM 484

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYC-----DSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            + +     +V N          Y      D  ++         +        +    I 
Sbjct: 485 TAANFSVNKDVMNDVSLFATSTDYVKTDSCDIVDELKKLQSEKTVYRGDKAESFLETIIS 544

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +  +   +   +     +   I+   ++  GV+  EE   L+K + SYN+++K+I   +
Sbjct: 545 NVSVDTEKAETYNKLYSNLEQTIANQRTSVSGVDEDEEALNLVKFQYSYNMASKIISVMN 604

Query: 470 KMLQTLLE 477
           +ML  L+ 
Sbjct: 605 QMLDKLIN 612


>gi|171059412|ref|YP_001791761.1| hypothetical protein Lcho_2731 [Leptothrix cholodnii SP-6]
 gi|170776857|gb|ACB34996.1| protein of unknown function DUF1078 domain protein [Leptothrix
           cholodnii SP-6]
          Length = 501

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/510 (12%), Positives = 121/510 (23%), Gaps = 48/510 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQR 56
           F +  +  N  S+    I  N+ NA+                              V   
Sbjct: 3   FQQGLSGLNATSKNLEVIGNNVANANTYGTKASRAEFADMYASTINNIGTGNVGIGVQVA 62

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + ++      L A  + +        F  +K+         N       + +   E +  
Sbjct: 63  AVSQQFTQGSLSATDNPLDMAINGAGFFQVKDT------AGNQLYTRNGQFKLDKEGFIV 116

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L       A         +A  +Q   A        E+       S   + +  
Sbjct: 117 NNSGQKLLGY---PANADGVVVPGAAGALQLPTAGIAPMATDEVKMEMNLDSRGVLTDPT 173

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV------------------ 218
                A+             ++   +                                  
Sbjct: 174 AVANKAAADAVTAQAAADAAVVTTQAAYDTAQANADAAPADTRLQSLATAALAARDRAVT 233

Query: 219 --------VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                   V T+        +   I+FE   SY   +      + G  V+          
Sbjct: 234 VAAQAATTVTTTADAAAAAPLAAQIDFEDPASYNKATSMTAYDVKGQPVAMTYYFQKSAP 293

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARV-LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
               +    +            +    L    S   PI+  +  V  +           +
Sbjct: 294 DTWNIYATANGTSINVDASGRPVPVTQLQFPTSGAAPISPAAPVVFDVPGTTAADGSTTE 353

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
              G+S       QY +  S      +       +  N+     +   Y +   K+    
Sbjct: 354 PITGVSFDFTQATQYGATFSVTDLTQNGYAPGEMSSLNVESNGIITARYSNGLTKSAGQI 413

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            VA       L     N   W     S S  +       F  +         V+L  EL 
Sbjct: 414 EVANFRNPQGLQAVGGN--AWASTFASGSATVGTPDSGNFGQLQSGSLEDSNVDLTAELV 471

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +I  ++ Y  + + I   D +LQTL+   
Sbjct: 472 NMITAQRVYQANAQTIKTQDSVLQTLVNLK 501


>gi|315497622|ref|YP_004086426.1| flagellar hook-associated protein flgk [Asticcacaulis excentricus
           CB 48]
 gi|315415634|gb|ADU12275.1| flagellar hook-associated protein FlgK [Asticcacaulis excentricus
           CB 48]
          Length = 718

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 127/425 (29%), Gaps = 10/425 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPENVTVVTQ 55
           MSL ++ N   +    A  Q   +  NI N +   Y+R     + ++       V     
Sbjct: 1   MSLNSILNIGASGLMTAQSQLRVVSDNISNVNTPGYIRKVGTQQASVIGSQGAGVMSGQV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    +     +S+  Q  +        +    D    N   +   K   +  S +
Sbjct: 61  MLAADKYLQQAAMRANSSASQAEVFHELFDQIQSQFGDLTDTNGLFNLGDKALSAAASAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +  +     + V+   E  +      + E+Q  RA+AD  I   +  +   +  ++ +N 
Sbjct: 121 ETPASSAARQEVLSAFESFLDESKRISGEIQNARANADSRIATTVKAINDLIKNISDLNP 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I   T +  DA     ++   + ++S++I +     +N  + V TS G  L       +
Sbjct: 181 TISQSTINGSDASGAQTKQTGYIDELSKLIDVEVSTNSNGGVTVRTSSGMVLAGDQRASL 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV-PKGKIKALLQIRDSVVPIFQNQLDEMA 294
           ++E  +  +  +  N + + G        S     G+++ LL +RD        QL E  
Sbjct: 241 SYEPTSPVSAATNFNSVIVTGPNGEKRDFSEHIKTGELRGLLDVRDKESVAVSAQLAEYM 300

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR----SNPSF 350
            V     +     A        L      + L   L      +   +         N + 
Sbjct: 301 SVYADQLNAAHNAASAVPAPNSLTGKAMNQTLAEALNGFADASGTGSGTTNLTVLDNTNK 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +     ++     +  +                     +        ++  +   +    
Sbjct: 361 IASKVDLTFSRDASGNSQVSINGGTAVLTSDSTLLSQINTALNGTGTLSFSDGKLSFAAT 420

Query: 411 LEKNR 415
                
Sbjct: 421 NSTYG 425



 Score = 92.4 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 130/432 (30%), Gaps = 7/432 (1%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V  Q +E  +++   L+A  +A        S        +  +  N       +    
Sbjct: 290 VAVSAQLAEYMSVYADQLNAAHNAASAVPAPNSLTGKAMNQTLAEALNGFADASGTGSGT 349

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD--KEIELEISNLRRFL 167
           +  +   N ++      +  + +    +  +       + +D+    +I   ++      
Sbjct: 350 TNLTVLDNTNKIASKVDLTFSRDASGNSQVSINGGTAVLTSDSTLLSQINTALNGTGTLS 409

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                ++ A    T     A D  +      +  S + G++ +VR++      T     L
Sbjct: 410 FSDGKLSFAATNSTYGVAIADDPSNPALKNGKGFSHLFGLNDLVRSDVPFDYATG----L 465

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             +     +   +    +    + +    +   +          +               
Sbjct: 466 TASSAHGFDSGSVKFNVMNGSGSRVQTVDIAFPAGGTMTDLVNTLNNTSSGLGRYGTFSL 525

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +   E+     G+ +    IA +S    G   +         L    ++++ ++P   +N
Sbjct: 526 STSGELTFRGFGNPANSLGIAEDSTTRLGTGASFSEMFGLGGLAAERTDSLALDPTIANN 585

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI-NTNVTLLEYARN 406
              L                +AG             K+  F    G    N TL  YA +
Sbjct: 586 LDRLSMATLNLTAASGTPALVAGDGSGAQRLATIATKSVTFKAAGGNAGGNSTLTRYAAD 645

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
             G +    + +      +  +    +   +   GVNL EEL  L   +Q+Y+ S++LI 
Sbjct: 646 LAGQVGATAATAKSRMDGADALAAEATSRRTAAEGVNLDEELINLTTYQQAYSASSRLIQ 705

Query: 467 FTDKMLQTLLEG 478
              +M   L   
Sbjct: 706 AAKEMYDVLFNM 717


>gi|51246516|ref|YP_066400.1| flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54]
 gi|50877553|emb|CAG37393.1| related to flagellar hook protein (FlgE) [Desulfotalea psychrophila
           LSv54]
          Length = 566

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/570 (9%), Positives = 134/570 (23%), Gaps = 94/570 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M + +      +  N   Q    I  N+ N +   Y    TM +            + + 
Sbjct: 1   MGIGSALYTGVSGLNTNGQAMTVIGNNLANTNTIAYKGSRTMFSDLLSSSVTGSGGTSQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAI----------------GQQRLLQSFEALKEMMSAD 93
              V     + +       + SS +                 Q        + K      
Sbjct: 61  GRGVGLSRVDNDFSQGTFESTSSGLDLAIEGNSFFLLSPSNDQSIHYSRAGSFKFNEGGY 120

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS------------ 141
                             E    + S+  L    +       +    +            
Sbjct: 121 LVNPGGLRVQGIAYGADGELAGGDPSDIFLDGAGMIKGAATSEMIMNTNLDSNAKIFPID 180

Query: 142 --------AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                       +++       +   +      ++  T      +      + A + +  
Sbjct: 181 FDASNTNSYNFSEELTLTGPATVPATVPPSNSTITAQTYYRKTAENSWECYYTAKETMAD 240

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                   + I      +    ++V  +S  T      P   +    ++   T+      
Sbjct: 241 GTAGSSTAASIKAGEVEIDAAGNLVDTSSATTPKANFDPFATSIAWDDTGATTTAVTAST 300

Query: 254 IDGVVVSSNQ-------------------------------------------GSAVPKG 270
                 S ++                                                  
Sbjct: 301 AGSPSSSIDKSLRENKSICTFDYKDPKTFTYSASVQIFDSLGNPHLISTYFRKTDDNTWD 360

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
              +L +   SV+P   N +              D      +  P     + I   +   
Sbjct: 361 TYYSLEKEDGSVIPADPNAISLTQLRFGSEGQPVDSAGLPLDGPPTATTEEPIDWGNGSE 420

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              I+ T     Q+ S+   +    +       +  N+    ++I  Y +  N+N     
Sbjct: 421 PTPITVTFDT-TQFNSSSKVISQEQNGYGAGNLSGVNIDEGGNVIAAYSNGKNRNIAAIS 479

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A       L     N         S +  + +    +   +  +      V++  E   
Sbjct: 480 LAKFQNPAGLTMEGNNLFA--ATGTSGAPRVGLPGPEL-GKVFTNSLEQSNVDMSVEFVR 536

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +I +++ Y  ++K+I   D++L  L+   +
Sbjct: 537 MITIQRGYQANSKIITTVDELLGELINLKR 566


>gi|157961177|ref|YP_001501211.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC
           700345]
 gi|157846177|gb|ABV86676.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC
           700345]
          Length = 640

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/463 (11%), Positives = 129/463 (27%), Gaps = 38/463 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MSL  + N A+     +  Q A    NI NA+   Y R+    +                
Sbjct: 1   MSL-DLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNDFYGAGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +    +   + L   S+A+ + +      +  + + +           ++    S
Sbjct: 60  YVSDVKRVYNDYATRELRIGSTAVSETQTTFGKMSELDQLFSQ--IGKGVPEGLNNFFAS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           + + S    +  +  +++ +A ++  + N     +       + +I    + +     EL
Sbjct: 118 MNALSDIPGDLGMRGSMLTSANQLADSINQMQGHLDSQMTQTNDQIAAVTTRINEISKEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +        +    LD++D L+ ++SE   ++ +  ++    V       L   
Sbjct: 178 GNINRELMKSQ---GEDMQLLDKQDALILELSEYASVNVVPLDSGAKSVMLGGSMMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                                I       S    +    G++ AL+  RD  +   Q + 
Sbjct: 235 EVSMQMGTVQGDPYPNELQ--ITAQSGNKSMIVDATKLGGQLGALVNYRDETLTPSQMEF 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL-----------DNKLCQGISETIC 339
            + A  +  +F++      +     G  I   I D             N     +S  I 
Sbjct: 293 GQYALGVADAFNQAQAQGFDLNGQVGANIFTDINDPSMQIGRVGALSSNTGTANLSVNID 352

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                  +   L+     + +             L     +  +   I      + +  T
Sbjct: 353 DVGSLTGSSYELKFTAPSTYELKDAASGNITPLTLNGTKLEGADGFSIDIDAGALASGDT 412

Query: 400 LL---------EYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
                        +           + +      +    + + 
Sbjct: 413 FEIRPTSGAAASISVEMTDGKGIAAAGTKITADAANTGNSQVK 455



 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 103/365 (28%), Gaps = 7/365 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +           A  V   FN +  +   +       I  +I++    +  +  ++  
Sbjct: 282 DETLTPSQMEFGQYALGVADAFNQAQAQGFDLNGQVGANIFTDINDPSMQIGRVGALSSN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S +              K +           + ++   T +GT L       I+
Sbjct: 342 TGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAASGNITPLTLNGTKLEGADGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP-IFQNQLDEMAR 295
            +     +  +             S + +              D+      Q +L  +  
Sbjct: 402 IDAGALASGDTFEIRPTSGAAASISVEMTDGKGIAAAGTKITADAANTGNSQVKLVSIDD 461

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +F           +         + D+D       +     N         +    
Sbjct: 462 RTDTNFPVTGSELTFEIDPAATPPTFEVFDVDGTSLGAAAAYTPPNISAHGFTFEIDSTA 521

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           + ++KF +++    G         +  N   + +         TL +   N+   +    
Sbjct: 522 ATAEKFTFDLSFAEGDNT------NMVNMAKLNEAKLMNGGKTTLNDVYENTKFDVGSKT 575

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +      +  ++        +  GVNL EE + L++ +QSY  S +++   +++  TL
Sbjct: 576 KAAEVAMGSADAIYTQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTL 635

Query: 476 LEGVK 480
              ++
Sbjct: 636 FSSLR 640


>gi|119775444|ref|YP_928184.1| flagellar hook-associated protein [Shewanella amazonensis SB2B]
 gi|119767944|gb|ABM00515.1| flagellar hook-associated protein [Shewanella amazonensis SB2B]
          Length = 638

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/434 (11%), Positives = 131/434 (30%), Gaps = 19/434 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS+  + N A+     +  Q      NI N + + Y R+                     
Sbjct: 1   MSI-DLLNIARTGVLASQAQLGVTSNNIANVNTEGYNRQVATQATHLSQRSGNSFYGTGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V + +        + L    +A G   +  +  +  + + +      +    ++ +  +
Sbjct: 60  YVSSVKRVYNEYAARELRIGQTAKGAAEVSHTKMSELDQLFSQ--IGKAIPQSLNDMFKN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           + S +   S+  +   V+ +A+++    N   R+++       ++I+   + +    +EL
Sbjct: 118 INSLADLPSDLGIRGGVLGSAQQMASAINEMQRQLEGQMKQTHEQIDAITTRVNEISTEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +        +    LD++D L+ ++SE   ++ I   N    +       L   
Sbjct: 178 ANINRELMKTM---GEDMQLLDKQDALIMELSEYAQVNVIPLENGAKSIMLGGAVMLVSA 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                           S+   +       +     +   G++ AL + RD  +   +N+L
Sbjct: 235 EVAMSMGTAQG--DPYSDELRLTATTGSSTLVVDPSKLGGQLSALYEFRDKTLIPAENEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-NPS 349
            +++  +  +F+E      +     G  I   I D      +             S +  
Sbjct: 293 GQLSLGIANAFNEAQKAGFDMNGQVGSNIFIDINDPLIAQSRVGQYGSNTGTASLSVSIE 352

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +      + +  +         D +         +                    +   
Sbjct: 353 DVGALSGGAYELKYTAPGTYELTDTLTGDVTPLTLSGSTLTGGAGFNINIGAGAFADGDR 412

Query: 410 WLEKNRSDSHDLHM 423
           +L +  S +     
Sbjct: 413 FLIRPTSGAAAQMS 426



 Score = 94.3 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/410 (8%), Positives = 98/410 (23%), Gaps = 18/410 (4%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +M        S               +       L         ++   +    + +   
Sbjct: 229 VMLVSAEVAMSMGTAQGDPYSDELRLTATTGSSTLVVDPSKLGGQLSALYEFRDKTLIPA 288

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             +  +      +           +N  +        +       R       +    +S
Sbjct: 289 ENELGQLSLGIANAFNEAQKAGFDMNGQVGSNIFIDINDPLIAQSRVGQYGSNTGTASLS 348

Query: 209 TIVRN-------NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
             + +         ++         L +T+  D+    ++  T+T  +      G    +
Sbjct: 349 VSIEDVGALSGGAYELKYTAPGTYELTDTLTGDVTPLTLSGSTLTGGAGFNINIGAGAFA 408

Query: 262 NQGSAVPKGKIKALLQI-----------RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
           +    + +    A  Q+             +             +V + S   +      
Sbjct: 409 DGDRFLIRPTSGAAAQMSVVMTDPKAIAAAAPKITADATNSGNTKVTVTSIDNRLAANFP 468

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
                  F  +   +  +      +           + S       V             
Sbjct: 469 VTGSELTFTLNTGANTYDVTAADGTVLAAGVAYTPPSISAFGFTFEVESIGAATDSFTFD 528

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                    ++     + D         TL++    +   +      +      ++ ++ 
Sbjct: 529 LSYGEGDNSNALAMAQLADTKLMNGGKSTLIDVFEKTKQQIGSGTKAAEVRLGSAEAIYQ 588

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                     GVNL EE + L++ +QSY  S +++    ++  TL   V+
Sbjct: 589 QAYGRVQEVSGVNLDEEAANLLRFQQSYQASARIMTTAQQIFDTLFASVR 638


>gi|294140184|ref|YP_003556162.1| flagellar hook protein FlgE [Shewanella violacea DSS12]
 gi|293326653|dbj|BAJ01384.1| flagellar hook protein FlgE [Shewanella violacea DSS12]
          Length = 454

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/483 (10%), Positives = 111/483 (22%), Gaps = 41/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI N ++  +            N             VT 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTAVGGGVTT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++A+        F      + A DH            + +   Y 
Sbjct: 62  SQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSELEAKDHS----FTRAGAFKVNSADYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D          T+ + V+             I +      +   +N 
Sbjct: 118 VDSQGNYLQTFPVDKDGNSTSVSLTTTKPVR-------------IPDTAGSPKKTENINI 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +    A         D  D      S  + +   +   + +  Y      +        
Sbjct: 165 QMNLNAADATLDPALFDPNDRDTYNNSTAVTMYDSLGEPHILTTYF-----VRPPNAAYT 219

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 ++               V     +      +     +          + ++   
Sbjct: 220 GESNWAAFYAIDGQQVDLAGPAGVFDQDTTGDGVADVLNTPAVNAGGWKGAVIKFNDTGA 279

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                      +               +        Q ++       QY S         
Sbjct: 280 HTTTDPDPILTVQLGVAGAG-------VLGPGTDGTQTLTIDFNNPTQYASTFEVTELNQ 332

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +A       L +       W     
Sbjct: 333 DGTTVGRLTNVEVGADGLINASYSNGSTVALARVALARFANEQGLTQVGN--TSWRASLD 390

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 391 SGLALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 450

Query: 476 LEG 478
           L+ 
Sbjct: 451 LQI 453


>gi|269836573|ref|YP_003318801.1| hypothetical protein Sthe_0541 [Sphaerobacter thermophilus DSM
           20745]
 gi|269785836|gb|ACZ37979.1| protein of unknown function DUF1078 domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 413

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/478 (8%), Positives = 100/478 (20%), Gaps = 66/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           L      A +           I  NI N     +                          
Sbjct: 2   LNRSMASAVSGLKAYQTWLDVIGNNIANLATPGFKASRVRFEDV---------------- 45

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                      +       S     +     +          + +       +   +  +
Sbjct: 46  -----------MSHTLRGASVPDPAQGRGGRNPAQVGLGVLAAGIDTDYAPGTPTATGKM 94

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               +      VV +   +                +  S     +      N AI     
Sbjct: 95  SHMAIQGEGYFVVADGFRTYYTRDGSFDLGIDGRLVNPSTGLYVMGWQADANGAIDTSQP 154

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                    ++ D +    S  I I   +          +   T+ +++    +      
Sbjct: 155 LSPIRIPIGEEMDAMP---SMSIVIPGNLNAAAATGTTYTTDVTVIDSLGFRHSVSLTFE 211

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T T+  +  +       +                                         
Sbjct: 212 KTGTNTWSWTYSSSEAGVTLTN---------------------------------ATGTV 238

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E D             +     +                 Q  +    +           
Sbjct: 239 EFDDQGNVLNVTSAGDLTIQWGNGAADTVIPGGGDFTRLTQLAAGSDAVG-VADGWTAGA 297

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                ++    +   Y +   K      +A       LL+  +N +       S    + 
Sbjct: 298 LTSFAISVDGVVTGIYSNGATKALGQIALATFANPGGLLKEGQNLLSP--SPNSGQAVIG 355

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+  Y     V+L EE + +I  E+ +  +++++  +D++LQ L+   +
Sbjct: 356 TPVTGGRGQIAAGYLEMSNVDLAEEFTNMILAERGFQANSRVVTTSDEVLQDLVNLKR 413


>gi|218778840|ref|YP_002430158.1| flagellar hook-associated protein FlgK [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760224|gb|ACL02690.1| Flagellar hook-associated protein FlgK [Desulfatibacillum
           alkenivorans AK-01]
          Length = 583

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/434 (11%), Positives = 139/434 (32%), Gaps = 21/434 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
            + +  + A             +  N+ N + + Y  +  +                 V 
Sbjct: 3   GIRSALDIAVGAMATHQYGMDVVSHNVANVNTEGYTLQTVINKSKVPQASGGFMFGRGVE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
               R       +K L  + S++     +++F  + + +  ++   N     +S   +S 
Sbjct: 63  TYEIRQLVDETVEKRLLEYRSSLASAEEIETFGKVLDGLF-NEVEGNGLGTMLSDFFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E  S N +       + + A  + Q  +     +     +    ++  +  +    S++ 
Sbjct: 122 EDLSLNSAGTAERSVLYEQALGLAQYIDELDAALIGEEENLGISLQSGVEAVNTLTSQIA 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I   + +  + +D LDQR+ L+ ++++ I + T  +++  + V    G TL    
Sbjct: 182 DLNQQIVAASQN-TNPNDLLDQRNYLMSELAQYIDVQTFAQDDGSLTVLGPRGVTLVIGS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            R              + + I+  G          V KG++   L++RD+V+   +  L+
Sbjct: 241 DRF--------DINLHQGDIIYGKGTDKELTITDYVEKGRMGGWLEMRDTVISELRANLN 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD-NKLCQGISETICVNPQYRSNPSF 350
           E+++ +I + +           +     +      +                       +
Sbjct: 293 EVSKEMIWAVNTIHSQGIGLTGLTSTTGSYTAAATNQPVGSAAADLFFGDRITDGGFNFW 352

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           + D              +      ++    +     +    + +   +++   +  + G+
Sbjct: 353 VYDASGNVVNPGGTNIAITANTTTMDDIATALGAVDLNVTASTVGGRLSITAGSGYTFGF 412

Query: 411 LEKNRSDSHDLHMK 424
            E   +    L + 
Sbjct: 413 TEDTSNVLAALGVN 426



 Score = 96.6 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 5/293 (1%)

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           + + +   + +  +   + G+++   +          G+   +    D   +   ++ V 
Sbjct: 295 SKEMIWAVNTIHSQGIGLTGLTSTTGSYTAAATNQPVGSAAADLFFGDRITDGGFNFWVY 354

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
             S  +   G    +   +      I   L   D  V         +   L  +      
Sbjct: 355 DASGNVVNPGGTNIAITANTTTMDDIATALGAVDLNVTAS-----TVGGRLSITAGSGYT 409

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                +    L           +    +     +        +   D  +       N  
Sbjct: 410 FGFTEDTSNVLAALGVNTFFTGEGSGTMGIHETIAADRNMIAAGKADAATGEISSGNNET 469

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           +LA       +   +  ++        I  N ++  +  + I  L  + + +      ++
Sbjct: 470 SLAIGELKYTNLSITEWQSKRIGSDTSITVNASIEGFYASMISALGSSLNSAERNREFAE 529

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  ++     +  GV+L EE++ LI+++QSY  + KLI   D++ QTL+   
Sbjct: 530 SMVQNLETVRGSISGVSLDEEMTKLIELQQSYAAAAKLITTMDEIFQTLMTIK 582


>gi|89075495|ref|ZP_01161906.1| flagellar hook protein [Photobacterium sp. SKA34]
 gi|89048767|gb|EAR54338.1| flagellar hook protein [Photobacterium sp. SKA34]
          Length = 467

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/486 (11%), Positives = 139/486 (28%), Gaps = 34/486 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
             N A +    A +   +   NI NA+   +                    T +   V  
Sbjct: 2   SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSNSIFSNAKTTTGGGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T         +      ++ +  +     F A+ +    ++  NN+          + E
Sbjct: 62  STVAQ---QFHEGSSIYTNNPLDLRVSGSGFFAVADN--KNEPANNNL-TRNGAFHLNNE 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    ++     V ++   + ++  +     K   +++S L     E   
Sbjct: 116 NELVNSEGKFLLGYPVNKDSNTVASYEAKSMKIDDVFGQPTKSGTIKVS-LNLPNKETAP 174

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            +++  FK     +        D L +     +    + + + + V   ++   + +TV 
Sbjct: 175 KSNSFDFKDPDSFNKSTSSTIYDSLGKP--YKMTTYYVAKYDPNAVPTNANTWEVHQTVT 232

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +   E++      S      +          +      +       D     +   L +
Sbjct: 233 NNSGEERLLKPDPASIPAAYQV-------IDNTDPTAPVVTGYRMRFDQNGQPYPGDLGD 285

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    +   P+    E      I  G  D    L     +       +        
Sbjct: 286 PTATPPIPPTPASPLNIQMETFASAGIDVGGADPTQSLTMNYDDPTQYASAFE---VRKF 342

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +     +  ++    +++  Y +  +       +A ++    L +       W  
Sbjct: 343 QDVDGATTGYLSKVDIDPEGNILASYSNGKDIVVGRVALARVSNEQGLAQLGGTL--WNT 400

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S        SQ  F  +         +++ +EL  LI  ++++  S++ +   +++ 
Sbjct: 401 TQESGQAIWGDASQGSFGSVKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQLQ 460

Query: 473 QTLLEG 478
           Q +L+ 
Sbjct: 461 QNILQI 466


>gi|332994156|gb|AEF04211.1| flagellar hook-associated protein FlgK [Alteromonas sp. SN2]
          Length = 709

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/449 (13%), Positives = 149/449 (33%), Gaps = 14/449 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSEN 59
           MS + +F+ A +  N +S+   +   NI N +   YVR  T         V +       
Sbjct: 1   MSAVDLFSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELVNSDVFGVEIGNTERII 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L    +++G+     S  +  + + A +   NS +  IS    ++++ S + +
Sbjct: 61  NVFAQNQLRRDITSVGELEAFSSKTSAIDTLLASEA--NSLSKGISDYFAAVQTASDDPT 118

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                + V+  +E + Q   T +  + +   + + E+   ++     +S +  +N  I  
Sbjct: 119 NLASREQVLGKSESLYQRMKTLSDYMVEKEEEFNLEVTSLVNRTNSLISSIGELNKNIVI 178

Query: 180 KTASKHD--AHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLFETVPRDI 235
              +         +++RD  +++++ I+ I        N  + V  + G +L        
Sbjct: 179 AKGNNTSDEPSALMNKRDAAVEELASIMAIDVKDSQSQNGAITVNLTTGESLILENGAFN 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPIFQNQL 290
            FE   S   TS+   +  D    + N  +     +   G +  L + R+ V+      +
Sbjct: 239 LFEISTSADSTSKELKLETDFGSQTKNDTTIRIVESDLGGSLGGLFRYRNEVLGTAMRDV 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +++     + + ++ +  + +   G  I D       +      +   V        + 
Sbjct: 299 GQLSVTFADAVNTQNKLGMDLDGQLGGNIFDIPTFRGLETQDTSGDYQVVGQLVAGKGAE 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L D     +    +    +     I                  + +N T+        G 
Sbjct: 359 LTDADYQIEVTAVSAGVPSEI--EITLLNPDGTPQKDGSGNDIVYSNYTVTSGFNELPGG 416

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +E     +    +  + +        S+ 
Sbjct: 417 IEVEFGGTSTYAVGDEFLMQPTKTIASSI 445



 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/438 (10%), Positives = 116/438 (26%), Gaps = 11/438 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
             ++         +    +                   +  +  D         +     
Sbjct: 277 GGSLGGLFRYRNEVLGTAMRDVGQ---LSVTFADAVNTQNKLGMDLDGQLGGNIFDIPTF 333

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
             LE+   +    ++G+ V     E+         EV  + A    EIE+ + N      
Sbjct: 334 RGLETQDTSGDYQVVGQLVAGKGAELTDADYQI--EVTAVSAGVPSEIEITLLNPDGTPQ 391

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG-----ISTIVRNNNDMVVYTSD 223
           +    ND +          ++     +V     S         +       + + + T+ 
Sbjct: 392 KDGSGNDIVYSNYTVTSGFNELPGGIEVEFGGTSTYAVGDEFLMQPTKTIASSIELATNR 451

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L    P     +  N  +       I    V   + Q +    G I  L        
Sbjct: 452 PEDLAFAAPVRAQADATNLGSANVSGVSITNTEVGGGTEQSAFDGAGGIHDLASSPSGTF 511

Query: 284 P-IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
               Q          +        +  N      L       +         +    ++ 
Sbjct: 512 GAPAQIVFTAEDSYQVLDGETPPNVITNVTGATNLSNLLAQAESSGSSPAWPAAFSSLDN 571

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               + S      +     +    +               N+N +       N   T  +
Sbjct: 572 YPGYDISLDGVPKAGDSFTISYNTDGFNDNSNALEIAALQNENLVQVSSESTNQQRTFQD 631

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              + +G + ++ + +      ++ +       + +  GV+L EE + L+K +QSY+ + 
Sbjct: 632 AYASMVGRIGEDAAMADISLTSAEAMKTQSENWFESVSGVSLDEEAANLVKFQQSYSAAA 691

Query: 463 KLIMFTDKMLQTLLEGVK 480
           +++    ++  T+L   +
Sbjct: 692 RILSTAQELFDTILSAAR 709


>gi|290474972|ref|YP_003467856.1| flagellar hook protein [Xenorhabdus bovienii SS-2004]
 gi|289174289|emb|CBJ81079.1| flagellar biosynthesis; hook protein [Xenorhabdus bovienii SS-2004]
          Length = 416

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/476 (11%), Positives = 113/476 (23%), Gaps = 65/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          KN 
Sbjct: 2   AFSQAVSGLNAAASNLDVIGNNIANSATFGFKSSSAAFADVFSGSDVGLGVKVSGMVKNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +         ++      +     +    N+    
Sbjct: 62  KDGSTTTTSRQLDMAITQGGFFRMLD------SNGSTFYSRNGQFNMDSDRNLINMQGMK 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L            +                                              
Sbjct: 116 LTGYPAVQGANGPEIQK------------------------------------------- 132

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                      RD+L  K +  + ++  + + N  V       +  ++          +S
Sbjct: 133 -GAAPGPISIPRDMLDAKATTNVTMTANLNSMNKKVDINPFNPSNKDSFNYSSGLSVYDS 191

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  N  F+       +  +           ++ D  V   + +          S S
Sbjct: 192 LGNEHNINVFFVKTNDNEWDIYAQDTSVPGSDHQKLNDKKVVEKEGE----------SKS 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 G        F  D      +       +      Q  S  S      +      
Sbjct: 242 VLFSGNGKIIGNNNAFAFDMPGLNGSIGAPITIDFNNSKQQSISQDSISNQQQNGYAAGS 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     +   Y +   +      +A  +    L     N   W+E   S S  + 
Sbjct: 302 FTNYRVDSDGKIHGLYSNQQTQVLGQVVLANFSNPEGLAAQGDNV--WVETGASGSPIVG 359

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  +         V++ +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 360 TAGSGNFGKLISGALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLVSM 415


>gi|71282480|ref|YP_268228.1| flagellar hook-associated protein [Colwellia psychrerythraea 34H]
 gi|71148220|gb|AAZ28693.1| flagellar hook-associated protein [Colwellia psychrerythraea 34H]
          Length = 665

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/464 (15%), Positives = 149/464 (32%), Gaps = 27/464 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENV 50
           MS+ +++    +    A QQ A+   NI N +   Y R+      +              
Sbjct: 1   MSV-SLYQSGMSGLLAAQQQLATTGHNISNVNTDGYNRQRAEQNATVGLNNGNNYIGGGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +            K    + S +G    L +     + + +     N+    + +   +
Sbjct: 60  YIQDITRLYDQFSHKEQITNQSKLGNADSLHARLTQLDQVMST--SGNAVVGSLDQFYQA 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L   + N ++  L   V++ A  +  +FN     + ++    + EIE   S +     EL
Sbjct: 118 LNGVADNPNDSGLRSIVLNQANTLSNDFNQLTNNLDQMTKSINGEIEQVASKISEISQEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I          +D LD+RD L+ ++S    ++T+   NN M V    GTTL   
Sbjct: 178 AKINETIMHSQQ-GGQPNDLLDKRDQLIGELSNYTQVNTVKDANNVMTVMIGQGTTLVAG 236

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           +       ++N+    S+   + +     S     +   G + A  + RD  +   + ++
Sbjct: 237 ITPMTL--QVNAGDPDSQQTELRLVSGSSSVALKGSTLGGSLAASFEFRDEHLSQTRTEI 294

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK-----------DLDNKLCQGISETIC 339
           D +A  +  + ++      +   + G+ I   I               N        TI 
Sbjct: 295 DRLAMAISSTLNDSQASGLDLNGLQGVNIFTDINSTQLQQGRVLAHSGNSGSTQAEITIT 354

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              +  ++   +R  G     +     +       I     +   +      + + T   
Sbjct: 355 DVSKLTTDEFEIRFEGGNFTLYNLTSGSSENLGPPILPSGGTHKPSSPDYGFSFVETGTP 414

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                   I            L   + +  +       +T  V+
Sbjct: 415 AAGDKFTIIPTKNSAALMQTTLTDGNAIAASTAIGVTPSTNNVS 458



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/430 (10%), Positives = 113/430 (26%), Gaps = 12/430 (2%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLES 113
             + + +     L   S +        +              + S T   I +L  ++ S
Sbjct: 244 VNAGDPDSQQTELRLVSGSSSVALKGSTLGGSLAASFEFRDEHLSQTRTEIDRLAMAISS 303

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSARE---VQKIRADADKEIELEISNLRRFLSEL 170
              +     L    +          +T  ++   +         + E+ I+++ +  ++ 
Sbjct: 304 TLNDSQASGLDLNGLQGVNIFTDINSTQLQQGRVLAHSGNSGSTQAEITITDVSKLTTDE 363

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +       T     +    +    +L         S     +       + G      
Sbjct: 364 FEIRFEGGNFTLYNLTSGSSENLGPPILPSGGTHKPSSPDYGFSFVETGTPAAGDKFTII 423

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
             ++       + T  +        GV  S+N  S      I  +              +
Sbjct: 424 PTKNSAALMQTTLTDGNAIAASTAIGVTPSTNNVSDGKIEIINVMNPEDAKSFTGTGLTV 483

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D +         +       +             D +      +  T     +   N   
Sbjct: 484 DVVESAPGSGIFDYRVFDTATPPALITSGNYNAGDSEVVDLPPLPGTPAFQIEISGNL-- 541

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 V        +        + +   +       +         T  +    S   
Sbjct: 542 ------VGSGTNAREEFSINDAFGVGNGKHAVAMAKTQEVGVTNGGKETFSKSLAVSTSV 595

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S++      +Q +F        +T GVNL EE + L+K +Q+Y  ++++I   + 
Sbjct: 596 VGAKASNAELTADTAQALFTQAYNRNQSTSGVNLDEEAANLLKFQQAYQAASQIISTANT 655

Query: 471 MLQTLLEGVK 480
           +  T+L  V+
Sbjct: 656 IFDTILAAVR 665


>gi|146307869|ref|YP_001188334.1| flagellar hook protein FlgE [Pseudomonas mendocina ymp]
 gi|145576070|gb|ABP85602.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina
           ymp]
          Length = 438

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/476 (9%), Positives = 105/476 (22%), Gaps = 43/476 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---RSENKNM 62
            FN   +    A++       NI NA    + +             + T    +     +
Sbjct: 2   SFNIGLSGLRAATKDLNVTGNNIANAGTAGFKQSRAEFADVYAASVLGTGSNPQGSGVLL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D     +   I   +                +                E +  N     
Sbjct: 62  GDISQLFNQGNINYTQNALDLAINGNGFFVTSNNGEISYTRAGYFGTDREGFMVNNFGYR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +D    +     +                                          
Sbjct: 122 LQGYTVDANGNLQNGVVS------------------------------------DLRIQT 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +     +         + ++  +      +     +S  T +++T      F +   
Sbjct: 146 ANQEPRATANLAQTFNLNSNNVVPTTVPFDPTDPTSYNSSTSTNIYDTQGNSHVFTQYFV 205

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +      +       +     P              +P           V      
Sbjct: 206 KTGPNTWTMNVLIDGRNPDDPTLTTPSSVDLQFTTAGQLDIPALVGSTPTGFTVAADGTI 265

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   + +     +     +       GI+  +  + Q+ S+ +  R          
Sbjct: 266 SLSTWVPAAPDNSVPPV--WSPNGAAANAAGITIDVRQSTQFASSFAVNRVSQDGYTTGQ 323

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +  +K      +A       L    +    W++  +S    + 
Sbjct: 324 LAGLEIDDTGVIFARYTNGQSKVQGQVVLANFANVQGLTPVGK--TAWVQSFQSGEPVVG 381

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +         V L ++L  LI  +++Y  + K I     + QT++  
Sbjct: 382 TPRAGTLGALQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINL 437


>gi|117923397|ref|YP_864014.1| flagellar hook-associated protein FlgK [Magnetococcus sp. MC-1]
 gi|117607153|gb|ABK42608.1| flagellar hook-associated protein FlgK [Magnetococcus sp. MC-1]
          Length = 588

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 160/431 (37%), Gaps = 20/431 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50
           ++ ++ N ++    +     +S+ +NI N +   Y R+    T +              V
Sbjct: 8   TISSLLNISKTGLLSNQYALSSVSQNIANVNTAGYSRQTAALTSNQGALRGNTDGIGGGV 67

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +     + D  +       G+      +  + E +  +D   +  +  + +    
Sbjct: 68  AVSDLKRSVDALVDNRIQLGLGEKGRLETRNQYLNMIENVF-NDQDGDGLSTRLDEFFSM 126

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++  + N +       ++ +A+ V    N    ++  +    D+EI++ ++ +   L  L
Sbjct: 127 VDKLADNPTSPASRAELVASAQNVTNFANKMYDDLAGLALPVDQEIDVLVNTINTKLKSL 186

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             V+ AI+ +  + + A D  DQRD +++++S +I +  +   +    + T+ G  L + 
Sbjct: 187 AEVDSAIQLREKTNNPALDLKDQRDEMIRELSGMIDVQVLSNQDGSTTLMTAGGELLMDH 246

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      +   T+    I ++G   S +    +  G +KALL++RD VV      L
Sbjct: 247 G--FTATFGRGALDTTTGFAGITVNGK--SGDYTDKLSSGSLKALLEVRDQVVGGSSGYL 302

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++  ++     + + I   S ++       G+ DL  +    ++               
Sbjct: 303 TKLESIVDELRFQVNSITSTSSSMYLNQSQTGVFDLGTQTATAVNAQDYTTVNAPPPDLG 362

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAGINTNVTLLEYARN 406
               G+V+  +  +  NL+     I             +      A +N N  L   A++
Sbjct: 363 RVVDGTVTFAYGSDANNLSFDSVNITSSMTIDEVVAALNASNAVSASVNANNQLSIAAKS 422

Query: 407 SIGWLEKNRSD 417
           +   +  + S+
Sbjct: 423 TYYAVSADSSN 433



 Score = 85.1 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/376 (12%), Positives = 114/376 (30%), Gaps = 10/376 (2%)

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              ++  S       L     +   +           +      A   +  +  +    L
Sbjct: 220 MIDVQVLSNQDGSTTLMTAGGELLMDHGFTATFGRGALDTTTGFAGITVNGKSGDYTDKL 279

Query: 168 SE---LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
           S      ++    +    S           D L  +++ I   S+ +  N         G
Sbjct: 280 SSGSLKALLEVRDQVVGGSSGYLTKLESIVDELRFQVNSITSTSSSMYLNQSQTGVFDLG 339

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           T     V                      +     S     +     I + + I D VV 
Sbjct: 340 TQTATAVNAQDYTTVNAPPPDLGRVVDGTVTFAYGSDANNLSFDSVNITSSMTI-DEVVA 398

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                    A V   +       +                 +        +  + VN + 
Sbjct: 399 ALNASNAVSASVNANNQLSIAAKSTYYAVSADSSNIMAAMGIGALFGGTGASNMAVNSEM 458

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            ++ + +   G +        +      D +    D  N  F          ++TL  + 
Sbjct: 459 VADQTTV-PVGRIRTDANGLPQFDNADNDGVLALGDLRNTKF-----TLFGESLTLSAHY 512

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            ++I  L   ++ + +    +   +N + +  ++  GV+L+EEL+ L++ ++++  S+K+
Sbjct: 513 ASTISQLGAEQASNEEQLGAATSTYNFMQQVRASISGVSLEEELTDLMRFQRAFQASSKM 572

Query: 465 IMFTDKMLQTLLEGVK 480
           ++  D++LQ+++  V+
Sbjct: 573 VVTADELLQSVIGMVR 588


>gi|312962588|ref|ZP_07777078.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6]
 gi|311283168|gb|EFQ61759.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6]
          Length = 437

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/477 (10%), Positives = 115/477 (24%), Gaps = 46/477 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQRSENKN 61
            FN   +    A++Q      NI N     +                     +  +    
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                        G   +L                 +         R   + +  N +  
Sbjct: 62  AAVSQQFTQGDVNGSGGILDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGFITNNTGT 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              +     A++  +       ++Q   ++   +   ++ +     S   V++  +K   
Sbjct: 122 SRLQGYA--ADDDGKIIKGGLTDLQLNLSNLPPKASTKVDSTSNLNSSEPVIDQTLKPFD 179

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            S            +   + +    +  +V+ +        +  TL +    + +     
Sbjct: 180 PSDTSTFTTQYSTTLYDSQGNAHPMVQYLVKTDG----NKWNAYTLIDGRNPNGSSPTGG 235

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           +      ++ +  DG                                        ++   
Sbjct: 236 TPPTPPVASTLTFDGAGK----------------------------------LSSIVTGG 261

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           S    +         +       +  +    GI+  +    QY S               
Sbjct: 262 SSSTTLTLTGWVPGTVTNGVWKANGADANPTGIAINMANITQYNSATYRNPPITDGYATG 321

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 + G   +   + +  +K      +A  N    L      S  W E   S     
Sbjct: 322 QITGLKIDGNGVMFATFSNQQSKAIGQISLASFNNEQGLQP--AGSTTWRETFASGQPGY 379

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     I  +      VNL  EL  LIK + +Y  + K I     ++QT+++ 
Sbjct: 380 DTPQSGTLGSIVANSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTIIQM 436


>gi|242280467|ref|YP_002992596.1| hypothetical protein Desal_3005 [Desulfovibrio salexigens DSM 2638]
 gi|242123361|gb|ACS81057.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 549

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/556 (9%), Positives = 121/556 (21%), Gaps = 83/556 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPENV--- 50
           M L A              + + +  NI N +   +                +   V   
Sbjct: 1   MGLSASLFSGITGLQAHGDKMSVLGNNIANVNTVGFKSAKMHFEDAISQDMSTATGVAQV 60

Query: 51  -TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   +   +         S +         F      + +      S        R 
Sbjct: 61  GRGVQVGAIYADFAQGSFETTSESTDLAIGGDGFF-----IVSPKDEETSYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDN---------AEEVVQNFNTSAREVQKIRADADKEIELEI 160
             + Y  +    +L    + +         A     N   +      IR +  +      
Sbjct: 116 DKDGYLTDPHGYVLQGWQVQDESNSQVATGASVSTSNAVRTVGVPTDIRLENFQSAPKAT 175

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNNNDM 217
           + +    +  +         TA      +  D         S       I     N +  
Sbjct: 176 TTINMITNLDSQEASRSTDSTAPYLSLFNSWDGAAEPPLGDSLYGYQSTIKVYDANGSAH 235

Query: 218 VVYTS-------------------------------DGTTLFETVPRDINFEKMNSYTVT 246
            V T                                DG     T    +      ++   
Sbjct: 236 NVTTYFDQVTLSNAGGKKVWEFIVTCDPEEDGRISDDGVNFAGTSAAGLLMTGTMTFNAA 295

Query: 247 SESNPIFIDGVVVSSNQG---------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            +   +    +  +              ++ +     L  +  + +        + +   
Sbjct: 296 GDLTGVSAFTLKSNGGTAAADLRNADEWSLAEFSQDGLPVLTANFLSRSNASFTDASNDP 355

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN---------- 347
           +           +           G    +  L       I   P +             
Sbjct: 356 VTIEMNFGLNNKDLSGTGTTKGWGGATVSNASLLGTNITDISNIPNFGDAEKSALATTSY 415

Query: 348 ---PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               + L               +++    L   Y +   +      +A  N +  L    
Sbjct: 416 SSGSTTLFQSQDGYTAGFLQSTSVSRDGVLTGRYSNGQIQELYVLTIASFNNDWGLRREG 475

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N         S      + +      I+ +      V+L  E   +I  ++ +  ++K+
Sbjct: 476 GNLFTQ--TRESGDALTGLPNSSGKGSIASNSLEMSNVDLAVEFVSMITTQRGFQANSKV 533

Query: 465 IMFTDKMLQTLLEGVK 480
           I  TD M+  L++  +
Sbjct: 534 ITTTDSMMGELIQLKR 549


>gi|218886713|ref|YP_002436034.1| hypothetical protein DvMF_1618 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757667|gb|ACL08566.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 525

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/533 (10%), Positives = 131/533 (24%), Gaps = 61/533 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------- 49
           M L +    + +   + ++  + I  N+ N+    Y     +      +           
Sbjct: 1   MGLSSSMYASVSGLLSTAESISVIGNNLANSSTTGYKSMSMLFEDVFYSSITTSGGIDQI 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                  + + +         S A+      + +  +++      +              
Sbjct: 61  GNGSAISAISTDFSQGSYQDTSEAMNMAIAGEGYFIVED----PQNDGQIYYTRAGDFTF 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-------- 161
           + E Y  N S   +    +D       + +T+                   +        
Sbjct: 117 NTEGYLVNSSGYQVQGWAVDPDTASSTDPSTTGALGDVQLKSRTSPASATTNVTLTVNLD 176

Query: 162 -----------------------NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
                                  +    L                   AH+     D + 
Sbjct: 177 SGGDDNSTSTTDPYFSLLTEWDGSADDPLGTTKYEYQTTITVYDEAGSAHELTVYFDQVE 236

Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
              +       +V  N    V T  G ++  T    +      S+  T            
Sbjct: 237 DSATGSTTWEYLVTMNPSEDVRTIGGQSVSGTSAAGLLMAGTLSFDATGALVSQTA--FT 294

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           + S     +       L ++    +P+F       A       ++   +  +        
Sbjct: 295 LGSTASGDLTDLSNWTLAELSTDGLPVFACNFSGSANASTTDEADAIQVELDFGLSAKSI 354

Query: 319 IADGIKDLDNKLCQGISETI-----------CVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                  + +    G   T+                + S  S      +           
Sbjct: 355 TDSWNTTVTSAADIGTDGTLLFGFTSTAYDTDRTTSHDSASSTDSSSQNGYATGYLTSYY 414

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +     +   Y +   +      +A  N +  L     N         S + ++    Q 
Sbjct: 415 VDEGGVIYATYSNGQTQALFIVALASFNNDQGLQLEGGNLYS--ATTESGTANIGRAGQG 472

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++  I         V++  E+  LI ++++Y  ++K+I   D+MLQT L   +
Sbjct: 473 IYGSIYGEKLEESNVDVSTEMVDLIVMQRAYQANSKVITTVDEMLQTALGLKR 525


>gi|114330361|ref|YP_746583.1| flagellar hook protein FlgE [Nitrosomonas eutropha C91]
 gi|114307375|gb|ABI58618.1| flagellar basal body FlaE domain protein [Nitrosomonas eutropha
           C91]
          Length = 419

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/482 (9%), Positives = 109/482 (22%), Gaps = 73/482 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---------QR 56
            F    +    AS +      NI NA+   + +     +    N                
Sbjct: 2   GFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFSDVFANSLGGGKNQIGIGTQVA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +  +      + +  + +        F                      +     + +  
Sbjct: 62  AIAQEFAQGNVTSSDNPLDVAITGNGFFRTNNN-------GTISYTRNGQFHLDKDGFLV 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +   +     D + ++                                     + N  
Sbjct: 115 NANSYNVTGFAADASGQI-------------------------------------IPNIP 137

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +  +  +              +   +     S     NN +    S    +F+++     
Sbjct: 138 VNLRLPTSDLTPKPTANFATGVNLDARTSVTSVAFDANNPLTYAHSTSGEIFDSLGNSHI 197

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T ++E          V +  G  +                             
Sbjct: 198 LNLFFQKTNSTEWGVFATVDGAVDTTNGLPLGVTFGGGGST------------------S 239

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L    +          +V   F A              S  +  + Q+ +          
Sbjct: 240 LTFDSNGIMTTPTGPIDVTVDFQAIDATKWGAIPDLTFSFDLTRSTQFGNKFGVNMMNQD 299

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     +++   ++   Y +   +      +AG +    L     N   W E   S
Sbjct: 300 GFTSGRLAGYSISDNGEIRGSYTNGVTRTLGQLALAGFSNPNGLKPMGNNQ--WAETAES 357

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +      V   +  S      V+L  EL  LI  ++ Y  + K I   D ++Q+++
Sbjct: 358 GLPLIGTPETGVLGSLQSSAVEESNVDLTSELVSLIMTQRVYQANAKTIQTQDAVMQSIM 417

Query: 477 EG 478
             
Sbjct: 418 NI 419


>gi|167750722|ref|ZP_02422849.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702]
 gi|167656401|gb|EDS00531.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702]
          Length = 521

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/523 (8%), Positives = 122/523 (23%), Gaps = 47/523 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------E 48
           ++       +      Q+   I  NI N +   +    T                     
Sbjct: 1   MVRSLFSGVSGLKTHQQKMDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V         K      +   S       +     +        D   N          
Sbjct: 61  GVNPSQVGYGTKLGAIGQVMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFN 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE---ISNLRR 165
                   + + +++     D       +   +    + +  +A     +     +    
Sbjct: 121 VDNAGNLVDSNGNMVLGVSGDATGVDASSNRITFVVPEVLDNEASYSKTITYKGGTYPLT 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             ++    +  I          + ++    +++Q   +    +     +       + G 
Sbjct: 181 VSADTATPDGNISVGFTVGESDYAYMSGNKLVVQLNEKNDYTNLNDLEDAVTRACENGGV 240

Query: 226 TLFETVPRDINFEKMNS---YTVTSESNPIFIDGVVVSSNQG------------------ 264
           ++   +P     + +        T+ +N + +D     ++                    
Sbjct: 241 SIEGVLPLHFELDTVPPAADIPATTATNTMKLDDGTTKASLTFTTVNAGEYANNYTINLR 300

Query: 265 ------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
                     K     L         +   Q             +    + + +   G  
Sbjct: 301 YSKNAADTTAKWSDNGLTISVCPGATVADIQAAVDKAAGSNEKYQLKVTSTDWDAANGAL 360

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG-GSVSKKFLWNVKNLAGYPDLINH 377
                 D    L  G +       Q   N         +       +   +     +   
Sbjct: 361 ETLLATDGKVGLAGGSNNFFSDMVQLLGNIKMTDGRVAATQTVKDLDSVYINEDGTIYGV 420

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
           +            +   +    L +   +   W E   S    +++  +     +     
Sbjct: 421 HSVHGIIMLGRIDIVTFDNPNGLEQVGSSY--WRETLSSGQPQVNIAGENGSASVVSGAL 478

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               V+L +E S +I  ++ +  ++++I  +D ML+ ++   +
Sbjct: 479 EMSNVDLSQEFSDMIITQRGFQANSRIITTSDTMLEEIVNLKR 521


>gi|262161346|ref|ZP_06030456.1| flagellar hook-associated protein FlgK [Vibrio cholerae INDRE 91/1]
 gi|262028657|gb|EEY47311.1| flagellar hook-associated protein FlgK [Vibrio cholerae INDRE 91/1]
          Length = 624

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 120/332 (36%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ ++ + QN N     V+  +   +K + L +  + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +    +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHILYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 ILYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|15887919|ref|NP_353600.1| flagellar hook protein FlgE [Agrobacterium tumefaciens str. C58]
 gi|15155515|gb|AAK86385.1| flagellar hook protein [Agrobacterium tumefaciens str. C58]
          Length = 425

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/481 (9%), Positives = 118/481 (24%), Gaps = 57/481 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+        +  N  + +  ++  NI NA    Y R  T  +      +  +  S   
Sbjct: 1   MSIFGTMRTGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLVLPSSSGSYASGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    +                      + +P        + + E Y +N +
Sbjct: 61  QSNVRYSISEQGNLSYTTSSTDLAIQGNGFFVVQDGSGTPYLTRAGSFQKNSEGYLENAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L                                    + N    L  + V N  +  
Sbjct: 121 GFQLMGYPYG------------------------SNPPAAVVNGFTGLEAINVNNFGLTA 156

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             +++      L++ D                            G +         +   
Sbjct: 157 SPSTQGSFPANLNRDDKAATAP-------------------LPSGNSATAAFGNKTSLTA 197

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +S       +  +      +                    +          ++      
Sbjct: 198 FDSGGAKVLYDFYYTKTGDNTWEVAVYRQDQSTNGGFPYTATPAANLVQTKVDLEFDPAT 257

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +                   +  I D  + + Q I+  +    Q+ +  +      + + 
Sbjct: 258 NKLT-----------TASPKSITIDDQVSGVPQAINIDLSQMTQFSAKFTPGTAVLNGNG 306

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                   +     +   Y D   +N     +A + +   L    +N   +L  N S   
Sbjct: 307 PSQIKDVEIGKDGLVTAVYQDGGRRNIYQLALATVPSVDNLTP--QNGNVYLPSNDSGVV 364

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +       F +I +       V++  EL+ +I+ ++ Y  ++K+      ++  L+   
Sbjct: 365 TIGFPQSGSFGYIQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGSDLMDVLINLK 424

Query: 480 K 480
           +
Sbjct: 425 R 425


>gi|24374758|ref|NP_718801.1| flagellar hook protein FlgE [Shewanella oneidensis MR-1]
 gi|24349424|gb|AAN56245.1|AE015762_2 flagellar hook protein FlgE [Shewanella oneidensis MR-1]
          Length = 453

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/483 (11%), Positives = 121/483 (25%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQ----FTRAGAFKVDKNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             ++              
Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVT-------------L 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D         + I   +   + M  Y           P + 
Sbjct: 165 QMNLNAKEGSLDPAAFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYF--------VKPNNG 216

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           ++   N++      +   +D   VS   G+               +       +   +  
Sbjct: 217 SYNGENNWVAYYAIDGKQVD---VSGPAGTYQTDTNGDGTPDATGTAQTTGGWKGSVLKF 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +G ++  DP    +E +            D      I        QY +  +      
Sbjct: 274 NSVGVYTGSDPAVVTTEALGVGGAGVLGPGADGTQAVNIKFNA--PTQYSAPFAATELSQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGEDGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLS 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  +S S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEPNSGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|269792279|ref|YP_003317183.1| flagellar hook-associated protein FlgK [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099914|gb|ACZ18901.1| flagellar hook-associated protein FlgK [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 858

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/465 (11%), Positives = 127/465 (27%), Gaps = 39/465 (8%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46
              F   +   +   +   +   NI NA+ + Y R+    + S                 
Sbjct: 5   FFGFEMGRRAMDYFRRGMETAGHNISNANVEGYSRQRVDASSSPPFTDPGLARPALPGQI 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   R       D          G    + +     E M  ++         ++ 
Sbjct: 65  GTGVQIDAIRRLRDLFLDSQYREEVCVKGYWDAVLNAVNQTE-MYVNEPAGKGFQAAMND 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              +L+  SK        ++++ NA+ VV           + R   +KEI L++      
Sbjct: 124 FWAALQEVSKRPDNSATRESLVQNAKSVVVFLQQLNTNYDQYRTALNKEIRLKVDEANSL 183

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTS 222
           + ++  +N  I+       + +D +D+RD+L++K+S+II  +     I   + D  V   
Sbjct: 184 IDQIAQLNGVIEEIKGVGGNPNDLMDRRDLLVEKLSKIIDCTVGSPCIDEADGDFKVDLG 243

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIF-----IDGVVVSSNQGSAVPKGKIKALLQ 277
               +  T  R +    +       +          +    V++          + +L  
Sbjct: 244 GKLLVQGTEARHLVLVPVAGNQGFFDVQVEDNLFSHVSDPTVATAILEQKMPESVVSLNV 303

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
            R +    ++    +    +             +  V    +              +   
Sbjct: 304 NRLASETRWELGRGDAMLTVTDKDRALGLRGSFALQVSSSGVVRSSAAFPAAGGNPVGTV 363

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +       S    L           +       +  + + +  + N         G    
Sbjct: 364 LIPPTGNASYRFRL-------SAGDFESMVSVTWDSVNSRWDITDNLGNSASTAGGFLNL 416

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
             L  +  N    +  + S   D         + +     +   V
Sbjct: 417 SDLNSFFANYSAKVTSSLSTGGDQLT-----LSSVDRHLLSISDV 456



 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 121/444 (27%), Gaps = 19/444 (4%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              +    +           +  D+ L + S   G    L         ++ +    +S 
Sbjct: 424 ANYSAKVTSSLSTGGDQLTLSSVDRHLLSISDVQGNLGSLLGLTGSSPAVTIEVTEADSL 483

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
               +K+  +        S D+  K   +           +  +  +   + D       
Sbjct: 484 VTIANKINSAY-------SSDLARKVPPELTTNPPGTPPETPEQWLRCLVEQDGTTGNYY 536

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND---- 216
             L+  L   T   + +                R +      +   + T  ++       
Sbjct: 537 LKLQSHLVGETYRINVLGGSDCGTGQGGSLYMARKLGFVNADDSTSVMTYSQDAYFVFED 596

Query: 217 -MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              + +++       +     +       V                     V  G+++ L
Sbjct: 597 KEYLSSTNAFKDARRLSASDLWSASMPTEVYKGLRLELKGVGATQIQSRHHVKGGELRGL 656

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
           L+ RD  +    +  DE+   L+  F+        S +       D    +  K     +
Sbjct: 657 LESRDDFLLTQMDWFDEIVFGLVTEFNSLHYSGHGSGDYINTTGIDFFVPVVGKYGASSN 716

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +    +  S+          +              +       +     +        
Sbjct: 717 FALNQLLEIHSSLV-------AASSGDGAGHAQGAAGNSSGDGSVALKLAQLKQAKVLNG 769

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            +     Y  + I  L      +  +    + + + I+    + +GVN+ EE+  +IK +
Sbjct: 770 RSADFNAYYESFIAELGAVGQRASTMAKNQKALVDQINTQRQSVMGVNMDEEMMDIIKFQ 829

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           Q++N   + I   D+ML  ++ G+
Sbjct: 830 QAFNGIARYITTIDEMLDKIINGM 853


>gi|326389474|ref|ZP_08211041.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994479|gb|EGD52904.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 417

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/478 (8%), Positives = 108/478 (22%), Gaps = 61/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + +            +S   +     S   +   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                               + +  +  D         + +   L   + ++     +  
Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPVATTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +                                                       +
Sbjct: 173 IGGN--------------------------------------------------LNASTA 182

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  N +  D    S          K       + S      + +D    +   S  
Sbjct: 183 IDADISYNIVVYDSQGGSHVATITFT-RKGANSWDWKVSSSDPAISSIDGTGTLTFDSEG 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +  P    +    G    +   ++ N     +S  +     + S         + ++   
Sbjct: 242 KIAPDQSGNRIATGTLTFNMDSNMTNATIGPVSLDLSKLTMFSSETDLRELSKNGNEAGS 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 302 LESINIDKYGVVSGIYSNGRRQIIGQIAIADFQNPMGLEKIGNTM--FINTVNSGEPMIG 359

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + K+I  +D++LQ L+   +
Sbjct: 360 AAGTGTRGSINPGTLEMSNVDLSNEFADMIVTQRGFQANAKVITVSDEILQDLVNMKR 417


>gi|153001472|ref|YP_001367153.1| flagellar hook protein FlgE [Shewanella baltica OS185]
 gi|160876203|ref|YP_001555519.1| flagellar hook protein FlgE [Shewanella baltica OS195]
 gi|217972598|ref|YP_002357349.1| flagellar hook protein FlgE [Shewanella baltica OS223]
 gi|151366090|gb|ABS09090.1| flagellar basal body FlaE domain protein [Shewanella baltica OS185]
 gi|160861725|gb|ABX50259.1| flagellar basal body FlaE domain protein [Shewanella baltica OS195]
 gi|217497733|gb|ACK45926.1| flagellar basal body FlaE domain protein [Shewanella baltica OS223]
 gi|315268393|gb|ADT95246.1| fagellar hook-basal body protein [Shewanella baltica OS678]
          Length = 453

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 116/483 (24%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+++        F      + + DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTASEIGSLDHS----FTRAGAFKVDSNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             +S      ++ + ++ 
Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPIKTENVSLQMNLNAKESTLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D         + +   +   + M  Y        +      
Sbjct: 178 -------------AAFDPLDPKTYNNVTSMTMYDSLGEPHIMTTY------FVKPNDASY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N E         +   + +DG   +    +               +              
Sbjct: 219 NGESNWVAYYAIDGKQVDLDGAAGTYQTDTT-------GDGNPDSTSTAQTTGGWKGSVL 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                           +         G+        Q ++       QY +  +      
Sbjct: 272 KFNSVGVYTGSDPAVVKTETLGVGGAGVLGAGADGTQDLTIKFNAPTQYAAPFAATELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +  +       +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSSVPLARVALVRFANEQGLTQVGN--TSWKASLN 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  IS S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|269103190|ref|ZP_06155887.1| flagellar hook protein FlgE [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163088|gb|EEZ41584.1| flagellar hook protein FlgE [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 449

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/486 (9%), Positives = 131/486 (26%), Gaps = 52/486 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
             N A +    A +   +   NI NA+   +                    T +   V  
Sbjct: 2   SVNIALSGLGAAQKDLNTTSNNIANANTYGFKESRAEFGDVYSNSIFSNAKTSTGGGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T         +      ++ +  +     F A+ +     +  NNS          + +
Sbjct: 62  STVAQ---QFHEGSSLYTNNPLDLRISGAGFFAVADN--KAEPANNSL-TRNGAFHLNNQ 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    +++    V ++   + ++  +                   S+   
Sbjct: 116 NELVNSEGKFLLGYEVNSDTNTVSSYEPKSMKIDDVFGK-------------PTPSKTMD 162

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ++  +  K  +  +     D +D   +  S    I   +     M  Y        +   
Sbjct: 163 ISLNLPNKETTPKNHPFNFDDKDSYSR--STSSTIYDSLGKPYKMNTYYVAKYNPADPTT 220

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +           + +  P+ +D   ++    + V  G I      +  ++    +   +
Sbjct: 221 ANTWEVYHTVTNPSGKELPLDVDTAKLNP---AFVANGAIHGTAAHKGYIMKFDTSGQQQ 277

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                + +         +                  +           +           
Sbjct: 278 AGSPSVINMVNFKTAGIDVGGADDSQALTMNYKEPTQYASPFEVRQFKDV---------- 327

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +     +  ++    +++  Y +  ++      +A ++    L +       W  
Sbjct: 328 ---DGATTGYLSKVDIDPDGNVLASYSNGKDRIVGRVAMARVSNEQGLSQLGGTL--WNV 382

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S        SQ  F  I         +++ +EL  LI  ++++  S++ +   +++ 
Sbjct: 383 TQESGDAVWGDASQGSFGAIKSGTLEQSNIDMTQELVDLITAQRNFQASSRALEVNNQLQ 442

Query: 473 QTLLEG 478
           Q +L+ 
Sbjct: 443 QNILQI 448


>gi|2443633|gb|AAC33158.1| hook associated protein [Vibrio cholerae]
          Length = 624

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 118/332 (35%), Gaps = 17/332 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N        A +Q  +   NI N + + Y R+  +   +             V V 
Sbjct: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R        K L+  S+    +R  +    +   + +           +++  DS++S
Sbjct: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKK-IPENLNEWFDSVKS 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + ++    K V++ ++ + QN N     V+  +    + +      + +   E+  +
Sbjct: 122 LADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITRQRVSSWRKRINQLALEIRDL 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTLFETVP 232
              +          +D +D+ + L+ ++S+   ++   R +     ++  +G TL     
Sbjct: 182 QRLMMRVP---GPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTE 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++ +  T +     ++G  + +     +  GK++A+L +RD  +P   +++  
Sbjct: 239 ASQL-RVIDGFPDTQQHRLAMVEGKALKAISARDI-GGKMEAILDMRDEHIPYLMDEVGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +A       +       +     G  +   + 
Sbjct: 297 LALSFSHEVNTLQSQGLDLRGNVGSALFTDVN 328



 Score = 93.6 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 102/397 (25%), Gaps = 4/397 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-ARE 144
           +    +       S    I    D+ +     +    L      +    ++         
Sbjct: 227 IGNGHTLVSGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEH 286

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +  +  +  +        +    S+   +   +     +  +       R V        
Sbjct: 287 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKAD 346

Query: 205 IGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + +           +  +  +    +            +    V  +   + +       
Sbjct: 347 MAVFIEDVSQLKGGEYSMQYNGSEFVVTLPSGQQTVLPVVKGNVYVDGLRVEVRNPPQVG 406

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +    P     A +++          Q  E +       ++   +         + ++ 
Sbjct: 407 ERILVRPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDVREFEVIVSP 466

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                     +G               + L     +++  L N K  A          + 
Sbjct: 467 TGDQFAVTDTKGNILLQPQPYPPTGPVTVLGTTFELTEGALPNDKFTANLVPSEGDNGNL 526

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                I       +   T+++   N    +    +    L   +++         ++  G
Sbjct: 527 RKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISG 586

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 587 VNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 623


>gi|291529033|emb|CBK94619.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1]
          Length = 477

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/484 (9%), Positives = 127/484 (26%), Gaps = 13/484 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N + + +       +            +   N 
Sbjct: 1   MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTASG---ASAGNG 57

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                  ++  IG      +         + +   N     ++    +      + +  +
Sbjct: 58  ATGTGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRL 117

Query: 123 LGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
             +      +       + +   +Q  + DA   +   I +    L  ++        + 
Sbjct: 118 FTRAGDFYVDGNGYLCMSSTGYTLQGWQVDAKGNV---IKDTVSSLQVMSSATKTSAPEA 174

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +K      LD+ D        II I        +         T  +        + ++
Sbjct: 175 TTKAYVSGVLDKNDAQAADTGRIITIGFFDDLGYNYTAKFGIKKTNTDGTYDVTLKDIVD 234

Query: 242 S-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           S     + V  + N I   G    +           + + +    V    +     ++  
Sbjct: 235 SKGNSIFDVDKDGNFITSQGPNGQTMYSYKGRAVDPQTIFEDASLVFDQSEGTFTSISSA 294

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              +    +                   +++    + ++               L+  G 
Sbjct: 295 NSPAAKTINLNLSVLNTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGNLQGDGK 354

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      ++    +   Y +          VA       L +   N       N S
Sbjct: 355 GKALGALTGITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCY-QSTLNSS 413

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +   + ++       IS        V+L  + + +I  ++ +  ++++I  +D +L+ L+
Sbjct: 414 EFDGIGVEISADGGSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELI 473

Query: 477 EGVK 480
              +
Sbjct: 474 NLKR 477


>gi|212634348|ref|YP_002310873.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3]
 gi|212555832|gb|ACJ28286.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans
           WP3]
          Length = 453

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 110/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +  ++A +   +   NI N +   +                          V  
Sbjct: 2   SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      + + DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQFTNNSLDMAINGGGFFVTSSEIGSQDHS----FTRAGAFKFDSNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+   VQ             I +      +   +  
Sbjct: 118 VDSAGNFLQTFPVDKDGNSTSVSLTTTEPVQ-------------IPDTAGSPVKTDNIGM 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +      K       D  D      S  + +   +   + M  Y               
Sbjct: 165 QMNLNAGDKTFDPANFDPDDPDTFNNSTSVTMYDSLGEPHVMTTY------FVRPPNAAH 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E         +   + +D    + +  +                         ++   
Sbjct: 219 TGESNWVAFYAVDGKQVDLDPASGTYDIDTTGDGNPDGTANAETAGGWKGAAISFNDTGA 278

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               + +     A              +        Q ++       QY S         
Sbjct: 279 YTGSNPAVIQTEALGVGGA-------NVLGPGADGAQTLTLNFNNPTQYASPFEVTELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVRFANEQGLSQAGN--TSWKASLD 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|114562348|ref|YP_749861.1| flagellar hook-associated protein FlgK [Shewanella frigidimarina
           NCIMB 400]
 gi|114333641|gb|ABI71023.1| flagellar hook-associated protein FlgK [Shewanella frigidimarina
           NCIMB 400]
          Length = 642

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 121/411 (29%), Gaps = 20/411 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+  + N A+     +  Q      NI NA+ + Y R+    +                
Sbjct: 1   MSI-DLLNIARTGVQASQAQLGVTSNNIANANTEGYNRQVATQSSLESQRLGNSFYGTGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +        + L    +++       S+  L E+              ++    S
Sbjct: 60  YVSDVKRVYNEFAARELRIGQTSMSAAE--TSYSKLSELDEIYSQIGKMVPENLNNFFAS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           + S +   ++  +    + +A+++    N    ++       + +IE   + +     EL
Sbjct: 118 INSVADLPTDLGIRTNSLSSAQQLAIGLNQMQSQLDGQTKQTNNQIESITTRINEISKEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +             LD++D L+ ++S+   ++ I  +     +       L   
Sbjct: 178 GSINLELMKSQ---GQDSQVLDKQDALILELSQYAQVNVIPLDTGAKSIMLGGSVMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                                  I    ++ +   +   G++ AL   RD  +     +L
Sbjct: 235 EVSMSMGMSTGDPYPNEPRINASIGDKTLNVDP--SKLGGQLGALFSFRDDTLLPASTEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A  +  +F+E      +     G  I   I D      +    +   N    +    
Sbjct: 293 GQLALGIADTFNEMQSKGFDLNGDIGSDIFRDINDPLMASGR--VGSNSTNSGTAAMSVN 350

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
           + D G++S           G   L +          +           ++ 
Sbjct: 351 IDDVGALSGGSYQLGYTTLGGYQLTDTQTGKQTTLTLSGSQLTGGAGFSIN 401



 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/364 (9%), Positives = 83/364 (22%), Gaps = 3/364 (0%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +       +   A  +   FN    +   +  D   +I  +I++       +   +  
Sbjct: 282 DDTLLPASTELGQLALGIADTFNEMQSKGFDLNGDIGSDIFRDINDPLMASGRVGSNSTN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S +                + + G              T  G+ L       IN
Sbjct: 342 SGTAAMSVNIDDVGALSGGSYQLGYTTLGGYQLTDTQTGKQTTLTLSGSQLTGGAGFSIN 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +                          +              ++       +L      
Sbjct: 402 IDSGAIADGDKFDIRPTAGAAAGLKVVMTDPKGIAAAGPQITPNTTN---SGELAVKVNA 458

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +  + +                 A    ++ N     +       P   +          
Sbjct: 459 INRADANFPVTGSELSVRVNTNTAIKTFEVFNAAGTSVGGPTAFTPPQINTGFGFSFEID 518

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                                  ++     + D     N   TL     N+   +     
Sbjct: 519 DQSTAGVTDTFTFDLSFAEGDNSNAVEMAKLSDTKLMNNGTGTLTSVFENTKLDIGSQTK 578

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   +  ++   S    +  GVNL EE + L++ +QSY  + +++     +  TL 
Sbjct: 579 SVEVRVGSATAIYQQASTRVQSESGVNLDEEAANLLRFQQSYQAAARIMTTAQTIFDTLF 638

Query: 477 EGVK 480
             V+
Sbjct: 639 SSVR 642


>gi|167623367|ref|YP_001673661.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis
           HAW-EB4]
 gi|167353389|gb|ABZ76002.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis
           HAW-EB4]
          Length = 639

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/460 (13%), Positives = 139/460 (30%), Gaps = 39/460 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MSL  + N A+     +  Q A    NI NA+   Y R+    +                
Sbjct: 1   MSL-DLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +    +   + L   S+A+ + +   S  +  + + +      +    ++    S
Sbjct: 60  YVSDVKRVYNDYATRELRIGSTAVSESQTTFSKMSQLDQLFSQ--MGKAVPQGLNDFFAS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           + + +   ++  L  + + +A ++  + N     +       + +I      +    +EL
Sbjct: 118 MNALADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTNDQISAVTDRINEISNEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +             LD++D L+ ++SE   ++ I   +    +       L   
Sbjct: 178 GSINRELMKSQ---GQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                                I       S    ++   G++ AL+  RD  +   Q +L
Sbjct: 235 EMSMQVGTAPGDPYPNELQ--ITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            + A  +  +F++      +     G  I                  I            
Sbjct: 293 GQFALGVSDAFNQAQAQGFDLNGQVGANIF---------------TDINDPSMQLGRVGA 337

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L      +   +      +           + +   + D V+G  T +TL          
Sbjct: 338 LSSNTGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNG------TK 391

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           LE     S ++   +    +      +++  V+L  E++ 
Sbjct: 392 LEGANGFSINIDAGALASGDTFEIRPTSSAAVSLSVEMTD 431



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 96/359 (26%), Gaps = 6/359 (1%)

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                +   A  V   FN +  +   +       I  +I++    L  +  ++       
Sbjct: 287 PSQMELGQFALGVSDAFNQAQAQGFDLNGQVGANIFTDINDPSMQLGRVGALSSNTGTAN 346

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            S +              K +           + ++   T +GT L       IN +   
Sbjct: 347 LSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSINIDAGA 406

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             +  +          V  S + +              D+                  + 
Sbjct: 407 LASGDTFEIRPTSSAAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETG 466

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                     E  P            +    G                 +    + ++KF
Sbjct: 467 FPVTGAELTFEIDPSTTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKF 526

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
            +++    G         +  +   + +         TL +   N+   +      +   
Sbjct: 527 TFDLSFAEGDNT------NMVSMAKLSEAKLMNGGKTTLTDVFENTTIDVGSKTKSAEIS 580

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              ++ ++        +  GVNL EE + L++ +QSY  S +++   +++  TL   ++
Sbjct: 581 MGSAEAIYKQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR 639


>gi|289523318|ref|ZP_06440172.1| flagellar hook-associated protein FlgK [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503010|gb|EFD24174.1| flagellar hook-associated protein FlgK [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 825

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/480 (13%), Positives = 143/480 (29%), Gaps = 49/480 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46
                  +   +   +   +   NI NAD   Y R+      +                 
Sbjct: 5   FFGLEMGRRALDYFRRGMETAGHNISNADVDGYSRQRVEAGTTIPFTDPAFNRPATPGQI 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   R    +  D       S +G    L+      E +  ++         + +
Sbjct: 65  GTGVQIEAIRRLRDSFLDAQYREEMSTLGYWEALEEAIGHIE-LFVNEPAGEGLKVALDE 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              +LE  SK        + VI + + +    +  +    + R   ++++   ++ +   
Sbjct: 124 FWAALEELSKRPDNAAAREGVIQSTKNLTVFLDQLSGNYDQYRLSLNQDLGSLVTEVNSL 183

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD--G 224
           + ++  +N+ I    A   + +D LD+RD+L +K+SE+I IS           +  D  G
Sbjct: 184 IDQIAALNEKIAQVKAVGGNPNDLLDRRDLLTEKLSELIDISVSTPLQEQDGDFKIDLHG 243

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-------------------- 264
             L +                      +  +      N                      
Sbjct: 244 KVLVQGSQTRHLVLVSVPGNEGFYDVQVEDNLFDHVDNTDVLLAVIEQKAPTAVHSVLVE 303

Query: 265 --SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
             ++    K+ +   + + V P     L     + + S          S  V     +D 
Sbjct: 304 RLASETNWKVGSPGSLSNVVSPDQALNLHGDFSLQVSSGGVVKTSHQFSGGVLPSPASDE 363

Query: 323 IKDLDNKLCQGISET-ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
            +D   +L  G  E  I VN    ++   +RD    +     +  +L    D IN    S
Sbjct: 364 SRDYSFRLAAGGFERVISVNWNDSASKWEIRDNAGNNALSASSTLSLQDLSDFINANYSS 423

Query: 382 FNKNFIFDPVAGINTNV-----TLLEYARNSIGWLE-KNRSDSHDLHMKSQVVFNHISES 435
           +    +         +      +L++   +    L   + + +  + +  +   N I+  
Sbjct: 424 YLNASVTSDNRLTIASSDRHLISLVDIKGDLTSQLGISDSAKTVTVSVTEEDSLNAIANK 483



 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/420 (11%), Positives = 116/420 (27%), Gaps = 13/420 (3%)

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +  +    ++ +A        +  +    + +        T  +     +         
Sbjct: 414 SDFINANYSSYLNASVTSDNRLTIASSDRHLISLVDIKGDLTSQLGISDSAKTVTVSVTE 473

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           ED L           +     S+ E + +RA  ++  +                   +  
Sbjct: 474 EDSLNAIANKINGAYMTEGGPSSPE-EWLRASVEQAPDGTYYLTLESQVMGEAQRINVTG 532

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                      L   +              ++  +    + + +  T    +     +  
Sbjct: 533 DENGGLYVAHNLGLLNSDGSTNFMTTAEDALISFDGRKYLSSVNRFTEARQITPSDGYAA 592

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N   V+S          + S      V  GKI  +L+ RD ++    +  DE+A  L  
Sbjct: 593 KNMSEVSSGITLQLAGTGMASVRVEHHVQGGKIYGMLEARDDLILSHLSTFDELAYRLAL 652

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +              +        L  +     S T+    +  S+            
Sbjct: 653 EMNALHYSGHGMGENADVTGTAFFVPLLRQYGAARSLTVNPLLEQDSSL----------- 701

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  +  G          +     +         +    E+  + I  L      + 
Sbjct: 702 -IAAAADDGEGNSLGSGDGTKALAMARLKQTKVLSGGSADFNEFYLSFIAELGAQGRRTV 760

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +    + + + I+    + +GVN+ EE+  ++K +Q++N   + I   D+ML T++  +
Sbjct: 761 TMAENQRALTDQINAQRQSVMGVNIDEEMMDIVKFQQAFNAMARYITTIDEMLDTIINRM 820


>gi|152997576|ref|YP_001342411.1| flagellar hook-associated protein FlgK [Marinomonas sp. MWYL1]
 gi|150838500|gb|ABR72476.1| flagellar hook-associated protein FlgK [Marinomonas sp. MWYL1]
          Length = 658

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/399 (12%), Positives = 133/399 (33%), Gaps = 9/399 (2%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNM 62
             +++   +   +++ +  +  +N  N D + Y R+ T T  SP   V +        N 
Sbjct: 3   SNLYSIGLSGLLSSNARINTTGQNTANVDTEGYSRQRTDTASSPVGGVVLRDTSRLVDNF 62

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               + + +S         S   + + + A+D    S + Y+ K   +L++ + + +   
Sbjct: 63  VSAQVRSDTSDFSYYDTYHSLMTMSDNLLAEDSI--SLSGYLDKAFSALQAANNDPTSSS 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L +    +   +V  +   +  V    +  D+++   ++++    + ++ +N  I  +  
Sbjct: 121 LRQLAHSSLNNLVGQYKALSNMVSGQESLVDQQLTTSLADINSITTRISNLNVKILREEG 180

Query: 183 SK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                A++  DQ+++L + +S+ + I+    ++  M +  ++G  L             N
Sbjct: 181 LSISPANELRDQQELLAKDLSKYLDINAQFNDDGLMTIQLANGQPLVMDQTPTELKVVPN 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                     +      V+    S    G +  L+  R          L + A  +  + 
Sbjct: 241 QLNPKKIDLVVSFGDYNVALKSDS--LGGSVGGLVDFRSEFSEYADRTLGQSAIAISDAM 298

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           + ++    ++    G  +                +    + +  +         +     
Sbjct: 299 NMQNGKGLDANGDFGKDLFSLEDISVYSSPDNTHKLSDFSVRVSA---GEASKITTDTYE 355

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                +        +   ++  K+ IFDP      +   
Sbjct: 356 FTRTDDNRFAIKKYDLNGNAVGKSTIFDPSNMTPDSNGY 394



 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/408 (12%), Positives = 122/408 (29%), Gaps = 22/408 (5%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
            ++            +   R     Y+    +  LG++ I  ++ +              
Sbjct: 257 NVALKSDSLGGSVGGLVDFRSEFSEYA----DRTLGQSAIAISDAMNMQNGKGLDANGDF 312

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             D     ++ + +      +L+  +  +    ASK     +   R    +   +   ++
Sbjct: 313 GKDLFSLEDISVYSSPDNTHKLSDFSVRVSAGEASKITTDTYEFTRTDDNRFAIKKYDLN 372

Query: 209 ---TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
                     D    T D    ++     ++    +   +  +    F      ++    
Sbjct: 373 GNAVGKSTIFDPSNMTPDSNGYYKIEELGLDIRVKDFNIIDHDDVFSFAPSAGAAAGLNL 432

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
            +  G   AL       V    + L E    L    + K   +  + +      A     
Sbjct: 433 KIKSGDNIALSAP--VGVSTSSDNLSEARISLSSVTNTKPTTSAFASDGSLYPSAPHSIY 490

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRD-----GGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +     + +   V      N     D     G S    F  +V +     D  +   D
Sbjct: 491 FTSPNSYVVRDASGVEIASVDNVFEYTDLLEKAGLSQDAGFDVSVSSKPQSGDEFSISTD 550

Query: 381 SFNKNFIFDPVAGIN--------TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              ++  F+ +A ++           +L++     I ++    ++       S+V+ N  
Sbjct: 551 EIGQSDNFNGLALVDLQNQSLVEGKASLVKAFAGFISYVGAKTAEVAGHAESSEVIMNDS 610

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    V+L EE   L+K +QSY+ S +++       +TLL  ++
Sbjct: 611 VNRRDRLSAVSLDEEAVNLMKYQQSYSASAQVVTAARTTFETLLGIMR 658


>gi|149908759|ref|ZP_01897420.1| flagellar hook protein [Moritella sp. PE36]
 gi|149808301|gb|EDM68240.1| flagellar hook protein [Moritella sp. PE36]
          Length = 437

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/478 (8%), Positives = 116/478 (24%), Gaps = 48/478 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---NKNM 62
            ++   +   + ++Q   I +NI N +   +       +      +          +   
Sbjct: 2   SYSIGLSGLRSTNEQLNVISQNIANVNTSGFKSGRAEFSSVYSGGSAGGVEVAAISSNFD 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +     ++      + F  L            +          +  +Y +  S   
Sbjct: 62  RDGDVVNTGRSMDLAISGRGFFVLNN-------GGETSYTRAGSFVRNASNYIETSSGAR 114

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +D    +       +  +  ++           S++    +              
Sbjct: 115 LQGYPVDANGAL------LSGVISDLKVGTGTLPAKASSSVEFAANLKADAAAPATAFDP 168

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +      +                             Y+  G          +  +    
Sbjct: 169 TNIQPDMYN----------------------------YSQSGKVFDSLGREHVLTQYFVK 200

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                    +     V++    +    G  +        +    +  +           +
Sbjct: 201 QVPGPAVTAVAAKPAVIADPTATPKVIGSPEVKAVAARGITVENEWDVHYFIDGQKAGTT 260

Query: 303 EKDPIAGNSENVPGLFIADG--IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               +  ++              + +       I  ++    Q  ++ S  R+  +    
Sbjct: 261 ATQTLNFDTSGNITSPTGSVELSQTITGADPLSIKISMTNMSQNAASFSLSRNETNGYGA 320

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     L   Y +  +K      +A       L +   ++  W +   S +  
Sbjct: 321 GDLKTIRIDDDGSLYGVYTNGQDKLQGKVILANFANPNGLRQ--GDNTTWGQSFASGAPT 378

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + + S      ++        V+L  EL  L+  +++Y  ++K I   +KM Q L   
Sbjct: 379 VGLPSSGTLGSLTSGAYEGSNVDLTGELVSLMTAQRNYQANSKTISAAEKMTQVLFNA 436


>gi|86157813|ref|YP_464598.1| hypothetical protein Adeh_1387 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774324|gb|ABC81161.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 428

 Score =  127 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/486 (9%), Positives = 101/486 (20%), Gaps = 64/486 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           MSLL   +        +S + + +  NI NA+   +         +     +        
Sbjct: 1   MSLLTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQTVIGGSGQVGL 60

Query: 60  -KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----DHYNNSPTHYISKLRDSLESY 114
              +          A+    L                       +      +     + Y
Sbjct: 61  GARLAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             NL    +     D +  V    +                                   
Sbjct: 121 LVNLEGLRVQGFPADPSGAVAGLPDDL--------------------------------- 147

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +                +    +  +     N       S   T+++ +   
Sbjct: 148 ----LVGTASAQPRATTRLTLKANLQADAAVPAAAWDPANPGATSNFSTTMTVYDALGAG 203

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              +     T     +   +      +   +          L   D        Q     
Sbjct: 204 HAVQVYFRKTGDGAWDWHALTDGAGVAGGTAGQLTQIAGGTLAFGDGGELTSMTQTSSFT 263

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                +    D   G+  +                        +    Q+ +  +    G
Sbjct: 264 PAGQAAPQPLDFSFGDPTSA-------------------GGTGLAGVTQFSATSASTFIG 304

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     +   + +   +      VAG      L     N +   +  
Sbjct: 305 QDGYGSGQLASVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLL--QQTP 362

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +          I         V+L E+   LI  ++++  ++K I   D++L  
Sbjct: 363 GSGQPVVGAAGAGGRASIVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSE 422

Query: 475 LLEGVK 480
           L+   +
Sbjct: 423 LIAMKR 428


>gi|91201245|emb|CAJ74305.1| similar to flagellar hook-associated protein FlgK [Candidatus
           Kuenenia stuttgartiensis]
          Length = 653

 Score =  127 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/411 (11%), Positives = 135/411 (32%), Gaps = 23/411 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
            +      +    A +       NI NA+ K Y ++                  + V +V
Sbjct: 3   SSDIQIGMSGVLAAQRAMMVSAHNISNANTKGYTKQTVSLATRLPLQTTIGSIGQGVDLV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
               +  +  +  +   +S++G   +        E +  ++  + S ++ ++     +  
Sbjct: 63  KIMRQKDDYLNSRIRFVTSSLGASSIKSQQLRELETVF-NELSDASISNSLTSFFKFVND 121

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S++         +++ A  + ++      E+  ++    + +E +++ +     ++  +
Sbjct: 122 LSQD-ESTSSRSVLVEKAITMTESIRAIVDELGMMKEFVKQSVESKLNEVNGLAKDIVDL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I     +  + +D LD+R+ LL +IS+ + ++T  + N  + V  + G  +  +   
Sbjct: 181 NKEIHSLQTTGGEPNDLLDKRETLLGEISKFLDVTTRTQKNGMIDVMIAGGVLVSGSNAL 240

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +     +S  +   S            +       G++  LL++ ++ +P +  +LD  
Sbjct: 241 TLESRVDSSGKLNITSYG----------SSKHKPTGGELSGLLEMYNNTLPAYDAKLDTF 290

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  LI  F+        ++      +    K  D       +           +      
Sbjct: 291 ATALIKKFNAIHSEGVGTDGGFTTVLGT-NKVTDATKALNTAGLGLPFAPSSGDIYVTVI 349

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             S  ++    +        L     D      +   ++     +T     
Sbjct: 350 NTSTGEEVKNKITVDVANDSLTKLSADIDGITNLSSAISDGKLQITADSGY 400



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/391 (11%), Positives = 98/391 (25%), Gaps = 7/391 (1%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                 +  +    ++L +Y   L           NA                       
Sbjct: 264 PTGGELSGLLEMYNNTLPAYDAKLDTFATALIKKFNAIHSEGVGTDGGFTTVLGTNKVTD 323

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
             +   +         +  +  +     S  +        DV    ++++         N
Sbjct: 324 ATKALNTAGLGLPFAPSSGDIYVTVINTSTGEEVKNKITVDVANDSLTKLS-ADIDGITN 382

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
               +         ++  +      ++       ++ + + GV   S+  +   +     
Sbjct: 383 LSSAISDGKLQITADSGYKFNFSYALDPNPGDLGASTVSLSGVYSGSSNDTYTFEALGTG 442

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
            +     +    ++    +   L               N   +  + G     N L    
Sbjct: 443 TIGTTSGLQVEVRDSGSNLIATLDVGEGYTPGNTLAVANGVSVSFSAGAVASGNTLTGVD 502

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD----- 389
                      +               +   K +     LI         N         
Sbjct: 503 VINDSDKTDLLAALGINTFFSGKDASDIDVEKRIREDVTLIATSIGESGDNTNALRLSAL 562

Query: 390 -PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                I  N TL +Y       L +  + ++    K   +   +        GVN+ EEL
Sbjct: 563 QNDNSIVGNTTLSDYLHQIAAALGEEANSAYKSEEKYTALEGSLQNRREEVSGVNIDEEL 622

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             LI+ +Q+Y  S K I   D+++ TLL  +
Sbjct: 623 VTLIRFQQAYQASAKYISTVDRLINTLLNSL 653


>gi|325291962|ref|YP_004277826.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3]
 gi|325059815|gb|ADY63506.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3]
          Length = 426

 Score =  127 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/481 (10%), Positives = 120/481 (24%), Gaps = 56/481 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+        +  N  + +  ++  NI NA    Y R  T  +      +  +  S   
Sbjct: 1   MSIFGTMRTGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLVLPSSSGSYASGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    +                        +P          + E Y +N +
Sbjct: 61  QSNVRYSISEQGNLSYTTSSTDLAIQGNGFFVVQDGGGTPYLTRAGSFVKNAEGYLENAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L                 +           +       ++     S    +N     
Sbjct: 121 GFQLMGYPYGANAPAAVVNGFTG------LEAVNVNNFGLTASPSTQGSFPANLNRDEAA 174

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             A    + +                  ++ + N   +  Y S G  +            
Sbjct: 175 VAAGSRPSDNLA----------------TSTIGNKTSLTAYDSGGAKVLYDFYYTKTGAN 218

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                V  +           ++   + V +    A     + + P  Q  +         
Sbjct: 219 TWEVAVYRQDQSTNGGFPYTATPAANLVKESVTLAFDPATNKLTPTSQKSITI------- 271

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                    D  + + Q IS  +    Q+ +  +      + + 
Sbjct: 272 ------------------------NDTVSGVPQAISIDLSDMSQFSTKFTPGTAILNGNG 307

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                   +     +   Y D   +N     VA + +   L    +N   +L  N S   
Sbjct: 308 PSQIKDVEIGKDGVVTAVYQDGGRRNIYQLAVATVPSVDNLSP--QNGNVYLPSNESGVV 365

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +       F +I +       V++  EL+ +I+ ++ Y  ++K+      ++  L+   
Sbjct: 366 TIGFPQTGSFGYIQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGSDLMDVLINLK 425

Query: 480 K 480
           +
Sbjct: 426 R 426


>gi|304438222|ref|ZP_07398164.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368829|gb|EFM22512.1| flagellar hook-associated protein FlgK [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 574

 Score =  127 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/468 (14%), Positives = 136/468 (29%), Gaps = 31/468 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------ 49
           S  A  N       N      +   NI NA  + Y R+   +  +               
Sbjct: 3   STFAGLNTMVRGIQNNQLSLDTTGHNITNASTEGYSRQRVDSAATNYQERPSLYGNVYVG 62

Query: 50  --VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V VV          DK   + +S     +  ++     + +  +D       + + + 
Sbjct: 63  GGVDVVALNRARNIYADKQFWSETSTQNLYKTYKTNYDKAQAVF-NDAKETGVLNAMQQF 121

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +L + S   S+      V+     +V    T AR++Q        E+ +++       
Sbjct: 122 YSALVNLSDYASDSASRTAVLTKGNNLVDRIKTGARQLQDQIKAQYDEMRIQVGKANSIA 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            ++ V+N  I     +   A+D  DQRD+L+ K+SEI  ++     N    V  S+G TL
Sbjct: 182 EKIAVLNQNIMLAENNGGKANDLRDQRDLLVDKLSEITNVNVYEEANGQYTV-VSNGMTL 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +     +  E              +   +  +   G     G ++AL          + 
Sbjct: 241 VQR-DSHLTIEMSPPIDNVRYGINDYTLRIKEAGGIGYVPQGGVLRALQDTIVQD-KGYI 298

Query: 288 NQLDEMARVLIGSFSEKD--PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           + L +++  L+ +F+         +++    L      K             +       
Sbjct: 299 DNLADISATLLTTFNGVHKLGAGIDADATSWLNFFGRNKFTSPSGTYDQMNYVWHVHPTT 358

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            +   L   G    +              +           I        +   + +  +
Sbjct: 359 GDRW-LEAYGVNITRTTSGGPPPTSATVTMATAATPDELRSIQIINELQVSEQLMAQGGQ 417

Query: 406 NSIGWLEKNRSDSHDLHMKSQ--VVFNHISESYSNTVGVNLQEELSFL 451
           N +   +   +      M      V              +L  ELS L
Sbjct: 418 NLVAARQIKNATISAGGMTYDFANVNGTADG--------SLAVELSKL 457


>gi|304409978|ref|ZP_07391597.1| fagellar hook-basal body protein [Shewanella baltica OS183]
 gi|307302309|ref|ZP_07582067.1| fagellar hook-basal body protein [Shewanella baltica BA175]
 gi|304351387|gb|EFM15786.1| fagellar hook-basal body protein [Shewanella baltica OS183]
 gi|306914347|gb|EFN44768.1| fagellar hook-basal body protein [Shewanella baltica BA175]
          Length = 453

 Score =  127 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 117/483 (24%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNAKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+++        F      +   DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTSSELGTLDHS----FTRAGAFKVDSNNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+A+ VQ             ++      ++   ++ 
Sbjct: 118 VDSAGNYLQTFPVDKDGNSTSVSLTTAKPVQIPDFAGSPVKTENVTLQMNLNAKAEALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           D  D         + I   +  ++ M  Y        +      
Sbjct: 178 -------------ALFDPSDGKTYNNVTSMTIYDSLGESHIMTTY------FVKPKNGAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           + E         ++ P+ ++G   +    +               +              
Sbjct: 219 DGENNWVAYYAIDNKPVNLNGPAGTYQTDTT-------GDGNPDSTSTAQTAGGWTGSVL 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +  D         P      G+        Q ++       QY    +      
Sbjct: 272 KFNSVGAYIDSNPAVITTQPLGNTGAGVLGAGADGTQTLTVKFNSPTQYADPFAATELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +  +       +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSSVALARVALVRFANEQGLTQVGN--TSWKASLA 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  IS S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGQALAGEANSGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|229592130|ref|YP_002874249.1| flagellar hook protein FlgE [Pseudomonas fluorescens SBW25]
 gi|229363996|emb|CAY51545.1| putative flagellar hook protein [Pseudomonas fluorescens SBW25]
          Length = 434

 Score =  127 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 108/483 (22%), Gaps = 61/483 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
            FN   +    A++Q      NI N     +       +       + T +         
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFSDIYAASKLGTGQNSIGNGVNL 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            + ++      ++     +        F   K    + +             R   + Y 
Sbjct: 62  AAVSQQFTQGDVNNSGGVLDMAIQGGGFFVQKGSDGSLE------YTRSGAFRADKDGYI 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +     +    +A+  +     +  ++                              
Sbjct: 116 TNNTGTSRLQGYAADADGNIVKGGLTDLQLN----------------------------- 146

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                +     A   +D    L      I   + +    +     T + TTL++      
Sbjct: 147 ----LSYLPPKASTKVDSTSNLNSSSPVIDQATKLFDPTDTSTFTTQNSTTLYDAQGNSH 202

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
              +    +  +E     +                                         
Sbjct: 203 EMVQYMVKSNPNEWKAYTLIDGRNLDGTKPTTTGATAPVPATYTFDGAGKLLGVTGTGVV 262

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               + +   P    +               +N     I+  +    QY S         
Sbjct: 263 GTTLTLTGWVPGTVTNG----------NWAPNNATAPNIAVNLGNVTQYNSASYRNPPTT 312

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       + G   L   + +  +K      +A  N    L         W E   
Sbjct: 313 DGYATGQITGLKIDGSGVLFATFSNQQSKAIGQISLASFNNEQGLQP--SGGTTWRETFA 370

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S               I  +      VNL  EL  LIK + +Y  + K I     ++QT+
Sbjct: 371 SGQPGYDTPQAGTLGSIVANSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTI 430

Query: 476 LEG 478
           ++ 
Sbjct: 431 IQM 433


>gi|261821159|ref|YP_003259265.1| flagellar hook-associated protein FlgK [Pectobacterium wasabiae
           WPP163]
 gi|261605172|gb|ACX87658.1| flagellar hook-associated protein FlgK [Pectobacterium wasabiae
           WPP163]
          Length = 556

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 154/429 (35%), Gaps = 15/429 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +    A    +++  NI N     Y R++T+   +             V V
Sbjct: 1   MSNLINTAMSGLKGAQVALSTVSNNISNQAVIGYSRQNTIIEQAISSSTSAGYIGNGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V+   +        L +  +      +   +E + ++ +       S +  I     +L+
Sbjct: 61  VSVDRQYNEFISNQLRSAQTTSS--SVSTYYEQISKIDNLLASSTTSLSSTIQGFFSNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N  +    +TV+  AE +V  F  + + ++ + +  + +I+  +  +  +  ++  
Sbjct: 119 NLTSNSGDSATRQTVLGKAEGLVNQFKVTDKYLRDMDSGLNTQIQSTVGQINTYTDQIAS 178

Query: 173 VNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N+ I       S    +D LDQRDVL+ ++++++G+  +V++     V   +GT+L + 
Sbjct: 179 LNNEITKLMGANSGTMPNDLLDQRDVLVNQLNKLVGVDVVVQDGTVYNVALKNGTSLVQA 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +      +S   T  +         V +    ++  G +  L+  R   +   +NQL
Sbjct: 239 GTSNQLVAISSSNDPTRLTIGYKDQTDDVVTLNEGSLTGGSLGGLISFRSETLDGTRNQL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++A     +F+ +     + + V G       K +     +     +       +    
Sbjct: 299 GQLALAFADAFNAQHQEGYDRDGVKGGDFFSFGKSVVLNDSKNGGNAVLTPSYTDTKDVQ 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK-NFIFDPVAGINTNVTLLEYARNSIG 409
             +         W V  L+           S N  NF    V    T  T   +    + 
Sbjct: 359 ATNYTVKYDGSNWQVTRLSDNSKFTATVDTSDNSLNFDGIKVVMTGTPATNDSFLLKPVN 418

Query: 410 WLEKNRSDS 418
            +  +   +
Sbjct: 419 DVIIDMKVA 427


>gi|307264876|ref|ZP_07546438.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920134|gb|EFN50346.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 417

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/478 (8%), Positives = 108/478 (22%), Gaps = 61/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + +            +S   +     S   +   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                               + +  +  D         + +   L   + ++     +  
Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPVATTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +                                                       +
Sbjct: 173 IGGN--------------------------------------------------LNASTA 182

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  N +  D    S          K       + S      + +D    +   S  
Sbjct: 183 IDADISYNIVVYDSQGGSHVATITFT-RKAANSWDWKVSSSDPAISSIDGTGTLTFDSEG 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +  P    +    G    +   ++ N     +S  +     + S         + ++   
Sbjct: 242 KIAPDQSGNRIATGTLTFNMDSNMTNATIGPVSLDLSKLTMFSSETDLRELSKNGNEAGS 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 302 LENINIDKYGVVSGIYSNGRRQIIGQIAIADFQNPMGLEKIGNTM--FINTVNSGEPMIG 359

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + K+I  +D++LQ L+   +
Sbjct: 360 AAGTGTRGSINPGTLEMSNVDLSNEFADMIVTQRGFQANAKVITVSDEILQDLVNMKR 417


>gi|332799182|ref|YP_004460681.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1]
 gi|332696917|gb|AEE91374.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1]
          Length = 411

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/475 (11%), Positives = 122/475 (25%), Gaps = 66/475 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
                     N   +   I  NI N +   + +       +                  +
Sbjct: 3   SMFSGVTGLRNHQVKMDVIGNNIANVNTVGFKKSRVTFQDT----------------LSQ 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +   +S  G +      +    M  A     +SP+            Y+ N+++  +  
Sbjct: 47  TMRGAASPQGNRGGTNPMQVGLGMTIASIDTIHSPSSA---------EYTGNMTDLSIEG 97

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  + +  F T A                 +  +    +E   V      ++    
Sbjct: 98  DGYFIVGDGLDMFYTRAGNFGFDENGNLINTANGLKVMGWQDTEKHEVPADKSPQSIRSI 157

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +    +        +I+    ++    NN    +      +L       I F K N+   
Sbjct: 158 EIRKGMMIPASATTEINFAKNLNAETENNGTYSLPFKVYDSLGCAHNLTIEFTKTNANEW 217

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                    +   +++N G+                                    +   
Sbjct: 218 NYNITFTDSNVTNIANNTGT-----------------------------ITFDNDGNCNI 248

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           P  G                 +      IS       QY    +      +         
Sbjct: 249 PAGGTMTFDL----------ANGADNMSISIDFSGTTQYAKETNVDLSYQNGYPAGTLTD 298

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                   +   + + +N+      +A  +    L++  +N   +   N S    +    
Sbjct: 299 VTTDTTGVITGIFDNGYNRQLAQVALANFDNPAGLIKAGQNMYRY--SNNSGEPQIGESG 356

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 I+  Y     V+L EE + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 357 TGGRGAIAPGYLEMSNVDLSEEFTQMIITQRGFQANSRIITTSDEMLQELVNLKR 411


>gi|291520177|emb|CBK75398.1| flagellar hook-associated protein FlgK [Butyrivibrio fibrisolvens
           16/4]
          Length = 494

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 127/391 (32%), Gaps = 23/391 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPEN 49
           S       A +  N A  Q  +   NI N +   Y ++   T              +   
Sbjct: 3   STFFGLTIAASGLNTAQAQINTTANNISNVNTTGYSKQVVNTVASSALRCYQSWGTTGTG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V   +        +D+    +SSA+G     + +    E   ++ + ++  T   +K+ +
Sbjct: 63  VEAKSVTQRRDLYYDEKYWNNSSALGFYEKKKYYMDQIEDYFSETNKDSGFTTVYTKMFN 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           ++ +   N  +D + K  I  A++V + FN  A ++  ++   + EI+  + ++     +
Sbjct: 123 AMSTLQGNPGDDTVRKQFISTAKQVTEYFNQLATKLDDLQNSINDEIKTAVDDINSISEK 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS------- 222
           L ++   I         A++  DQR VL+ K+S+++ +S    +  +             
Sbjct: 183 LAILTKQINIIEQGGGHANELRDQRSVLVDKLSKLVDVSVSEVDVKNSNYPDMQTGATYY 242

Query: 223 ----DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
               +G  L +T   +               + I     ++ +  G+            +
Sbjct: 243 TVYINGQILVDTYEHNTLEVVSRELDQNHNQSDIDGLYEIIWTQDGNKFNSTPNGNGGAM 302

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
           +        N  + M   +  +  +   I G S              +     +    + 
Sbjct: 303 KAMFEVRDGNNNENMHAYVANTTGDTITINGLSITNINELNMPTRGSVSTNNTEYTYNSF 362

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
             N     N + +    + +         ++
Sbjct: 363 SYNTDDDGNITTVTFYLNQTLTVEEQGNLIS 393


>gi|260437431|ref|ZP_05791247.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM
           2876]
 gi|292810063|gb|EFF69268.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM
           2876]
          Length = 579

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/575 (10%), Positives = 149/575 (25%), Gaps = 99/575 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           M +        +    +S    +   N+ N +   YVR+  +                  
Sbjct: 1   MGMAG-LYVGLSGLQTSSNSLNTTANNLANVNTSGYVRQQVVNGDKSYNFVGTTAATTTG 59

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHS--------------------------SAIGQQR 78
                V++           D                                 + IG Q+
Sbjct: 60  QKGLGVSIAKINHVRDMFLDAAYRKEYGRQGFYDKLYDSVLEIETQMGETDYITGIGFQK 119

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQN 137
            +  F      ++     N + +  +      ++S        +  ++ ++   +  V  
Sbjct: 120 NISDFLQSINEVAKTPGDNTARSALVQSAVQFIDSAQTIYKGLVNYQSNLNAEIKTTVSR 179

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVV------------------------ 173
            N    ++  +  +  K              +  ++                        
Sbjct: 180 INEIGSQLVTLNRNISKIETGGYETASNLRDQRDMLLDELSSYCKITYNEGDNGSVEVYI 239

Query: 174 ----------NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND--MVVYT 221
                      ++++ K     D  D +          S    I+T    +      ++ 
Sbjct: 240 EGNKFADEMSYNSLQCKAFQGTDLVDIVWPAFNEESLYSYSEVIATSKNTDIGGLKGLFI 299

Query: 222 SDGTTLFETVPRDINFEKMNSY----TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
           + G +       D+     + Y          NP ++           +V    +   + 
Sbjct: 300 ARGASTPTYEHADMKEPVPDDYITAQYPDGTGNPEYLRRKNEYDLYTQSVDTSALVNTIA 359

Query: 278 IRDSVVPIFQNQLDEMA-----------RVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
             D ++     +++ +               +    +          +         +  
Sbjct: 360 NFDKLISSMVQEINNVFCPEKVITIGGKEYTVLDTDKAPTTTDGEYGIELFTRDFCDRYT 419

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
              +             + +N ++     SV+K  + +   +    +  + Y  +     
Sbjct: 420 VTNINGTDYYVRNNINTFGNNSAYTIMNISVNKDIVQDYSKIPLSGNGGDAYNTAKELVD 479

Query: 387 IFDPVAG----INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           +F             +T  E+  + I  +       + +      + + +       +GV
Sbjct: 480 VFSKKIMRYNDSFDGMTFEEFYESMINDVANTGKIYNSMSTNETTLASQLDNQRQQVMGV 539

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              EELS +IK +Q+YN S++ I   D M+QTL+ 
Sbjct: 540 ASDEELSNMIKFQQAYNASSRFINVIDDMIQTLIN 574


>gi|168234103|ref|ZP_02659161.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194468943|ref|ZP_03074927.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455307|gb|EDX44146.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205331935|gb|EDZ18699.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 425

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/476 (11%), Positives = 109/476 (22%), Gaps = 56/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q     A         A K        +                 + 
Sbjct: 116 LTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQVN--------------LNST 161

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               A +  D  D         I +     N +DM +Y                 +  ++
Sbjct: 162 DAKPAKNPFDPSDANTYNKKGSITVYDSQGNAHDMSIYY---------------VKNDSN 206

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  +          + Q      G +  +   R +  P      D           
Sbjct: 207 KWDVWTLDSSVAGATANKAAQMHFTENGTLDEIYNYRLTSTPPASPTWDLATTPNPEKQI 266

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +      N                           +    Q   + + +    +  K   
Sbjct: 267 QIITGTIN----------------GATPADFSLSFLNSMQQNTGSNNIVATNQNGYKPGD 310

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 311 LVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 368

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 369 TAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 424


>gi|242238975|ref|YP_002987156.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech703]
 gi|242131032|gb|ACS85334.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech703]
          Length = 551

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 76/541 (14%), Positives = 167/541 (30%), Gaps = 77/541 (14%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----------SENKNM 62
               A    ++   NI N+    Y R+      +                        ++
Sbjct: 12  GLKAAQVALSTTSNNISNSSTDGYNRQSVSLAQTSGTTKTYGTVGNGVSVVSVDRAYDSL 71

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L + SS    Q     +E + ++       ++S +  +S    +LES S+N S+  
Sbjct: 72  VVSQLRSASST--YQATSAYYEQVSQIDDLLSDSDSSISTLMSSFFTALESLSENASDTS 129

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +TVI +AE +V  F ++ + ++ + +  +  I      +  +  ++  +N  I     
Sbjct: 130 ARQTVISSAESMVNQFVSTDQYLRDMDSAINSSISSSADQINSYTQQIATLNKQISQLGT 189

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S   A+  LDQRD L+ ++++I+G+    + ++ + V   +G TL +           +S
Sbjct: 190 SGSAANQLLDQRDQLISELNDIVGVDVTTQ-DSMVSVSLKNGLTLVQGDTSYSMKAVTSS 248

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              +                    +  G +  LL  R S +   ++QL+ +A  L  SF+
Sbjct: 249 SDSSRTVLAYDTGVGDPIELDEDDLQSGSVYGLLNFRSSALDSARDQLNLIALTLADSFN 308

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +     +     G                             ++     D     K   
Sbjct: 309 TQHKAGIDLNGDAGTDFFSFSSPTVVSNSNNSGSATLTASYTDTSSVQASDYVLSYKSGS 368

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFD----PVAGINTNVTLLEYARNSIGWLEKNRSDS 418
           W+V   +    +        + N         +    +  +  ++  N++  +  + S +
Sbjct: 369 WSVTKSSDGSSVSYTTGSDSSGNTTLSFDGVEITVSGSASSGDKFTLNTVSDVISDLSVA 428

Query: 419 -------------------------------HDLHMKSQVVFNHISESYSNTVGV----- 442
                                          +   +      N    +  + +GV     
Sbjct: 429 ISDPALLAAGQDDSSTGESDNRNASALLDLQNSKLINGNTTLNSAYAALVSDIGVKTSGA 488

Query: 443 ------------------------NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                                   NL EE   L + +Q Y  + K++   + +  +LL  
Sbjct: 489 ETKSETQSTIVDQLTEKQQSVSGVNLDEEYVDLQRYQQYYTANAKILSTANTIFDSLLSA 548

Query: 479 V 479
           +
Sbjct: 549 I 549


>gi|146293690|ref|YP_001184114.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32]
 gi|145565380|gb|ABP76315.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427089|gb|ADV55163.1| flagellar hook-basal body protein [Shewanella putrefaciens 200]
          Length = 453

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/483 (10%), Positives = 107/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI NA+   +            N             V  
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++        F      +   D             +    +Y 
Sbjct: 62  SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFS----YTRAGAFKVDASNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S + L    +D          T+A+ VQ             +S              
Sbjct: 118 VDSSGNYLQTFPVDKEGNSTSVSLTTAKPVQIPDTAGSPVKTENVS-------------F 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              D  D         + I   +   + M  Y        +      
Sbjct: 165 QMNLNAKEGSLDPAAFDPTDPKTYTSVTSMTIYDSLGEPHIMTTY------FVKPTNGAH 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N E         +   + + G   +    +               +              
Sbjct: 219 NGENNWVAYYAVDGKQVDVAGAAGTYQTDTD-------GDGVPDSTGTAETAGGWRGSVL 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                     G+        Q ++       QY +  +      
Sbjct: 272 KFNSVGVYTGSDPAIVTTETLGVGGAGVLGPGADGTQSLTVKFNAPTQYSAPFAATELTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +        L +       W     
Sbjct: 332 DGTTVGRLTNVEIGADGLITASYSNGSTVPLARVALVRFANEQGLTQVGN--TSWKASLN 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  +S S      ++L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|269103183|ref|ZP_06155880.1| flagellar hook-associated protein FlgK [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163081|gb|EEZ41577.1| flagellar hook-associated protein FlgK [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 661

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/421 (11%), Positives = 133/421 (31%), Gaps = 17/421 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
           L +     +    + +Q      NI N +   Y R+                      + 
Sbjct: 3   LDLMQIGMSGLRTSQKQLDVASHNISNVNTPGYSRQVVEQKADDAFYNGSNYYGTGAYID 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                      + L   ++ + +  + Q    + +  ++    N    + ++   +S+ S
Sbjct: 63  NVSRAYDQFAARELTLSTTHLEEANVRQQNMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S + ++    +TV++ A++  Q+F TS + +  +  D   +I + +  +     EL  V
Sbjct: 121 LSDHPNDLGARQTVLEQAKQTAQSFQTSHQTLTNMHQDVTDQIGVSLERINTLGQELAAV 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232
           N +++ + AS    +D  D++  L+ ++++   ++ +    +    V    G TL   V 
Sbjct: 181 NTSLQEQAASGKS-NDLFDKQRSLINELAKYTKVTVLADKGSLANTVIIGSGDTLVSGVT 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         ++   +                 G + +LL IRD+V+    +++  
Sbjct: 240 SAKLKLVNGKPDTQTQQIALVTGNSAKEIKSDGI--GGSLGSLLDIRDNVIDKSLDEMGR 297

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV-NPQYRSNPSFL 351
           MA       ++      +     G  +   +  +     + I         Q   +    
Sbjct: 298 MAIGFSKQINDLQQQGVDLNGEQGALLFSDVNSVSAMQQRAIKPLGSNAEIQVSIDDVNQ 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G       ++  N        +    + +       ++    ++ + +         
Sbjct: 358 LKTGDYQLDMNFDGTNYNYTVTDQDGKQTTISDTSQKQSLSVDGFSINIEKAFSTPTAGQ 417

Query: 412 E 412
            
Sbjct: 418 S 418



 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/415 (12%), Positives = 123/415 (29%), Gaps = 17/415 (4%)

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                  AL    SA +  ++     +  L D  ++      +++    +  + +  + +
Sbjct: 251 DTQTQQIALVTGNSAKEIKSDGIGGSLGSLLDIRDNVIDKSLDEMGRMAIGFSKQ--IND 308

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
                 ++   +          +S +++   +    N  I+      +       Q D+ 
Sbjct: 309 LQQQGVDLNGEQGALLFSDVNSVSAMQQRAIKPLGSNAEIQVSIDDVNQLKTGDYQLDMN 368

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
               +    ++        +   +   +   +    +I           SES  I     
Sbjct: 369 FDGTNYNYTVTDQDGKQTTISDTSQKQSLSVDGFSINIEKAFSTPTAGQSESILIRPVRD 428

Query: 258 VVSSNQGSAVPKGKIKALLQIR-------------DSVVPIFQNQLDEMARVLIGSFSEK 304
             ++         K+    Q+                 VP   + L  +  + + +   K
Sbjct: 429 GAANMAVEMSDPKKLAGHSQLAVMPHQANQGSASVIKTVPQLSDALAGVYELKVNNSGNK 488

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             +   +   P   I D   ++                    + S L           + 
Sbjct: 489 ISLINQATGQPMTLIDDKGSEVTELGYDSAKPQNLTVKTDAGDLSGLALQAGALAGDSFQ 548

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
           +          N   +      +    +  N   ++++  +     +   + ++      
Sbjct: 549 LNLGRAQATGGNG--NFLAMQQVQAQKSMNNGKSSVIDLFQKLSTDIGMAKKNADQTAEV 606

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +Q+ F+  SE  SN  GVNL EE + L+K +QSY  S++++    +   TL+  V
Sbjct: 607 TQLDFDAASERVSNLSGVNLDEEAANLMKFQQSYMASSRIMSVAKETFDTLMRAV 661


>gi|291524892|emb|CBK90479.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629]
          Length = 477

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/484 (9%), Positives = 124/484 (25%), Gaps = 13/484 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N + + +       +      T  T      N 
Sbjct: 1   MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTTSGT---SAGNG 57

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                  ++  IG      +         + +   N     ++    +      + +  +
Sbjct: 58  AAGTGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRL 117

Query: 123 LGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
             +      +       + +   +Q  + DA   +   I +    L  ++        + 
Sbjct: 118 FTRAGDFYVDGNGYLCMSSTGYTLQGWQVDAKGNV---IKDTVSSLQVMSSATKTSAPEA 174

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +K      LD+ D        II I        +         T  +        + ++
Sbjct: 175 TTKAYVSGVLDKNDAQAADTGRIITIGFFDDLGYNYTAKFGIKKTNTDGTYDVTLKDIVD 234

Query: 242 S-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           S     + V  + N I   G    +           + + +    V    +     ++  
Sbjct: 235 SKGNSIFDVDKDGNFITSQGPNGQTMYSYKGRAVDPQTIFEDASLVFDQSEGTFTSISSA 294

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              +    +                   +++    + ++               L+  G 
Sbjct: 295 NSPAAKTINLNLSVLNTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGDLQGDGK 354

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      ++    +   Y +          VA       L +   N       +  
Sbjct: 355 GKALGALTGITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSGE 414

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   S      IS        V+L  + + +I  ++ +  ++++I  +D +L+ L+
Sbjct: 415 FDGIGVEISADG-GSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELI 473

Query: 477 EGVK 480
              +
Sbjct: 474 NLKR 477


>gi|330811235|ref|YP_004355697.1| flagellar hook protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379343|gb|AEA70693.1| Putative flagellar hook protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 432

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 108/476 (22%), Gaps = 49/476 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---QRSENKNM 62
            FN   +    A++Q      NI N     +               + +          +
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATKLGSGSKTVGNGVRL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +         +     +       +      +  +         +   E Y  N     
Sbjct: 62  ANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSNDGSLSYTRAGTFKTDKEGYITNSDGTS 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +    +A   +Q        +  +R D         S +   ++              
Sbjct: 122 RLQGYGVDANGKIQ-----NGILTDLRIDTSNLPPSATSLVSSTINLN------------ 164

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S    I+     ++         T +++T     + ++   
Sbjct: 165 -------------------STATAITAAFNPSDTATFTKQFTTPVYDTQGNQHSMDQYMV 205

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +  N   +      +                +               A V      
Sbjct: 206 KTAGNTWNVYTLIDGRNLNGTLPTTTGATAPVPSTMNFDSNGKLTTVTTPPATVNSDLVL 265

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   +  V                   I+ ++    Q+ ++ +      +      
Sbjct: 266 TGWVPGTVTNGV--------WAANGAASAPTITISMGNTTQFNADTARSIPTQNGYATGQ 317

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                + G   L+ ++ ++  K      +A       L         W E   S      
Sbjct: 318 ITNLTIDGSGVLLANFSNNQTKPIGQLALASFTNEQGLQPVGG--TSWKETFASGIPGYD 375

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I  +      VNL  EL  LIK + +Y  + K I     ++QT+++ 
Sbjct: 376 APQTGTLGSIVSNSLEESNVNLTNELVELIKAQSNYQANAKTISTQSTIMQTIIQM 431


>gi|296135666|ref|YP_003642908.1| flagellar hook-associated protein FlgK [Thiomonas intermedia K12]
 gi|295795788|gb|ADG30578.1| flagellar hook-associated protein FlgK [Thiomonas intermedia K12]
          Length = 667

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/398 (13%), Positives = 125/398 (31%), Gaps = 15/398 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
            +  + N A      A         NI N +   Y R   + +                 
Sbjct: 3   GISGLLNNALTGLQAAQSALQVTGNNIANVNTPGYSRETAVQSTLTPSLYGGQYLGNGTQ 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +        +     + + ++       L +       + A      S T         +
Sbjct: 63  IDAVTRSYNSYLQSQVWSTAATASGANTLNTQIQPIANLIAGTDSGLS-TSINQFFASGV 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              + N ++    +++I  ++ + Q   TSA+++Q      ++++   ++ +     ++ 
Sbjct: 122 AQVAVNPADIPSRQSLISQSQSLAQTIQTSAQQLQSAANGVNQQLGQSVTAINSLTQQIA 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I   + +    +  LDQRD L+ ++S  +G++ + ++ N + V+T +G  L    
Sbjct: 182 QLNVQINTLSGTGSTPNSLLDQRDQLITQLSGQVGVTVLPQDGNQVNVFTGNGQVLVAGA 241

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    ++Y  +        +G V+S              LLQ R  V+   QN L 
Sbjct: 242 QSFDLKTTPSAYDPSQLEVAYASNGAVLSQGLQGGTL----GGLLQFRSQVLQPAQNALG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L  + + +     +     G  +                  +       +N    
Sbjct: 298 RIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVISGSVVDANALTT 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
            D         W+V NL+    +      +     +  
Sbjct: 358 ADYRLNYDGSNWSVTNLSTGQPVSGATVGASGSATVLS 395



 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/415 (7%), Positives = 95/415 (22%), Gaps = 5/415 (1%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--- 96
                     V V   +S +              +             +  +        
Sbjct: 226 QVNVFTGNGQVLVAGAQSFDLKTTPSAYDPSQLEVAYASNGAVLSQGLQGGTLGGLLQFR 285

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +       + L    +  +  ++        ++             + +       +  I
Sbjct: 286 SQVLQPAQNALGRIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVI 345

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
              + +     +    +N      + +       +    V     + ++    +  N + 
Sbjct: 346 SGSVVDANALTTADYRLNYDGSNWSVTNLSTGQPVSGATVGASGSATVLSFDGVQVNVSG 405

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                 +   +  T    +NF+ + +      +   ++       +            L 
Sbjct: 406 AQA--GNSFEVQPTRYGALNFQSVLTNPTQIAAASPYVSSAGQMQSGSLVNTNLGNLTLS 463

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             + S        +   A V             +      +  +     L +        
Sbjct: 464 AGQYSATSGSSALVISGASVPTPLQVTLTGGGTSGAVGFQVTQSGSATVLASGSLSLGGS 523

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
              ++  Y +NP       +++     +       P    +  ++     +         
Sbjct: 524 GQVLSIPYANNPPGGYWNVTLAGSTAVSGDAFTLSPASGGNGGNAQAMAALQTAKTLEGG 583

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           + +L       +  +    + +      +  V    S +  +  GVNL EE + L
Sbjct: 584 STSLEGAYSQLVSQVATQGNQAQSALSAASAVAAQASAAQQSVSGVNLDEEATNL 638


>gi|241589577|ref|YP_002979602.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D]
 gi|240868289|gb|ACS65948.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D]
          Length = 641

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/443 (13%), Positives = 145/443 (32%), Gaps = 17/443 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENV 50
           MS  ++ N   +    A      I  NI N +   Y R++ + T             +  
Sbjct: 1   MS-SSLLNIGASGLRTAGIHLQVIGSNIANVNTPGYSRQEVVQTENPPHYGGVGDLGQGA 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V T +          + +  +A      L S  +      +D   N+  +  ++   D+
Sbjct: 60  NVATVKRIYDQFLAAQVQSSQAAASSANQLNSLLSNLSQFMSD--RNSGLSSALTSFFDA 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +      S+       +     +   FN  A +   +    + +++ +I  +   + ++
Sbjct: 118 ADGLVSKPSDATARHVFLGAISGLQSRFNLIAEQASALADQVNSQVQTQIGAVNGAVRQI 177

Query: 171 TVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +ND I    +S    A+D  DQRD L+Q +++ I  S++  ++    +Y  +G  L +
Sbjct: 178 ASLNDQIVKAESSAGAPANDLRDQRDQLVQTLNQSIKASSVETSDGQYNIYVGNGQALVQ 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      + Y  +  S         V  +  + +  G +  L++ R   +   QN 
Sbjct: 238 GNRSFELTTVPSPYDPSQLSVGYKSPAGTVIVD-DAQLGGGALGGLMEFRSKTLIQAQNG 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +  +A  +    + +  +  ++    G  I                          +  +
Sbjct: 297 VGRLAAAISAEVNAQSRLGMDANGKMGGDIFSVAGPSVMPRSDNRGSATLTASITNATAT 356

Query: 350 FLRDGGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              D     +  ++ V          ++  +  + +   +       + +  L+    N+
Sbjct: 357 PAHDYQLRYQGGVYTVSRYPDGSKATVVTTWPATVDGIRLNLSGTMHSGDSFLVRPTANA 416

Query: 408 IGWLEKNRSDSHDLHMKSQVVFN 430
              ++   +D   +   S VV +
Sbjct: 417 AATMKVLTTDYRTIAASSAVVAD 439



 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/453 (8%), Positives = 107/453 (23%), Gaps = 19/453 (4%)

Query: 44  TISPENVTVVTQRSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             S         R +   +          SS          +    + +   +      T
Sbjct: 187 AESSAGAPANDLRDQRDQLVQTLNQSIKASSVETSDGQYNIYVGNGQALVQGNRSFELTT 246

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                    L    K+ +  ++          +       ++ + + +    +      +
Sbjct: 247 VPSPYDPSQLSVGYKSPAGTVIVDDAQLGGGALGGLMEFRSKTLIQAQNGVGRLAAAISA 306

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +          N  +     S           +     ++  I  +      +D  +  
Sbjct: 307 EVNAQSRLGMDANGKMGGDIFSVAGPSVMPRSDNRGSATLTASIT-NATATPAHDYQLRY 365

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
             G       P       + ++  T +   + + G + S +     P     A +++  +
Sbjct: 366 QGGVYTVSRYPDGSKATVVTTWPATVDGIRLNLSGTMHSGDSFLVRPTANAAATMKVLTT 425

Query: 282 VVPIF----------------QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                                   +  +   ++   +    +  N+     L    G   
Sbjct: 426 DYRTIAASSAVVADVGGNNRGSGAVTSVGINVVAFPAAAVKLTYNASAGGSLTGFPGSVT 485

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
           +                Q  +                 +   L+          ++    
Sbjct: 486 VTFNGKSTTYAGSAPYVQGATYAFNGIHMMMTGAPANGDTFKLSPNVANSTDSGNASTLA 545

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            + +        V++     N +  +      +        V+            GVNL 
Sbjct: 546 KLRNASLLDGGTVSVGAAWHNLVTQVGIQAHQAAGNLTSQTVLHRSAVSQQQAVSGVNLD 605

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EE   L++ +++Y  S K++   + +  TLL  
Sbjct: 606 EEAMKLMQYQKAYQASAKVMQTANSLFDTLLSM 638


>gi|167034944|ref|YP_001670175.1| flagellar hook protein FlgE [Pseudomonas putida GB-1]
 gi|166861432|gb|ABY99839.1| flagellar basal body FlaE domain protein [Pseudomonas putida GB-1]
          Length = 440

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/485 (10%), Positives = 120/485 (24%), Gaps = 59/485 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENVTVV 53
            FN   +    A++       NI N     +                          T V
Sbjct: 2   SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKNTVGTGV 61

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              + ++      ++    A+        F  + +         +             + 
Sbjct: 62  KTAAVSQLFTPGNINGTGQALDMAIDGNGFFVMSDN-------GSKIYTRAGAFYSDKDG 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y  N S   L    +D   ++ Q   T                +L+I       +    +
Sbjct: 115 YVVNASGSKLQGYAVDANGKITQGVLT----------------DLQIDTSNLTPNPTGKI 158

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           ++ +   +++   A    D  +      +    +     N + +  Y     T       
Sbjct: 159 SENVNLNSSATAPAVTPFDPANTGTYNYTFNTDVYDSQGNAHQLNQYFVKDATSNSWTMY 218

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                +  +   ++      +      +   +A+  G +   + I               
Sbjct: 219 TTIDGRNPADPTSTTPLANKLPFKSDGTLDTAAMTAGPVAGGMTI--------------- 263

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   + K     N              +       G++  +    QY +  +    
Sbjct: 264 -------AANKSFTLDNWIPAQKNAAGVWGANGATANVAGVNLDMLGTTQYNAASATTAK 316

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +   +    ++  ++ +  +K      +A       L         W E 
Sbjct: 317 SQDGFATGELSGLTIDQSGNMFANFTNGQDKVIGQVAIANFANLQGLTPIGG--TNWKES 374

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S    +          I+        V+L  EL  LIK + +Y  + K I     ++Q
Sbjct: 375 YASGVPVIGAPDTGTLGQITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQ 434

Query: 474 TLLEG 478
           T+++ 
Sbjct: 435 TIIQM 439


>gi|149675698|dbj|BAF64728.1| flagellar hook protein [Shewanella livingstonensis]
          Length = 459

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/483 (9%), Positives = 106/483 (21%), Gaps = 36/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55
             N A +    A +   +   NI N +   +                           T 
Sbjct: 2   SLNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYADSIFSNSKTAVGGGATT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+++        F      + + D             +    +Y 
Sbjct: 62  TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQS----YTRAGAFKVDSSNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+ + ++             +          T ++ 
Sbjct: 118 VDSAGNFLQGFPVDEDGNSTSVSLTTTQPIKIPDTAGSPVQTGNVGLQMNLNVSETALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           +  D      S  + I   +  ++ M  Y        +      
Sbjct: 178 -------------ANFNPADSDTFNNSTSVTIYDSLGESHIMTTY------FVKPTNGSY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E         + +P+ +     + +  +            +  +              
Sbjct: 219 TGESNWVAFYAVDGDPVDVASGPGTYSTDTDGDSIA-DGTGTVSAANPGGAAGTWSGAVL 277

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +                   G         Q ++       QY S         
Sbjct: 278 KFNSVGAYTGSDPAIITTEALGTGGAGALGPGADGTQTLTIKFNSPTQYSSPFEVTELTQ 337

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     +   Y +          +        L +       W     
Sbjct: 338 DGITVGRLTNVGIGSDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLD 395

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 396 SGAALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLNQTI 455

Query: 476 LEG 478
           L+ 
Sbjct: 456 LQI 458


>gi|299131803|ref|ZP_07024998.1| flagellar hook-associated protein FlgK [Afipia sp. 1NLS2]
 gi|298591940|gb|EFI52140.1| flagellar hook-associated protein FlgK [Afipia sp. 1NLS2]
          Length = 610

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 147/442 (33%), Gaps = 19/442 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRSENKNMFDK 65
            +         + +  N+ N +   YVR+               V+V     E      K
Sbjct: 1   MSGLRANQAALSLVSSNVANIETPGYVRKTVNQVQTTTGTGSAGVSVTGVNRELDVYVQK 60

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +   +S       L +     + +  D   + +     ++L  +L++ S +        
Sbjct: 61  QVLTETSGASYASTLSAALQRLQGIYGDPSSDTTLEAAFNQLTAALQALSTSSDSPAARS 120

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T ++ A+ + Q  N+++  +Q +RADA+  I+  +      + ++  +N+ +   T    
Sbjct: 121 TAVNAAQSLAQMLNSTSAGIQSLRADAESSIKSSVDAANNAMQQIATINNQLLGTTGDDA 180

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A   LDQRD  + ++S+++ I  +  + N + V+T+ G  L  +    I F+   + T 
Sbjct: 181 AAASLLDQRDQYITQLSQLMDIRVLTNDRNQVTVFTNSGVQLVGSEAAKITFDAQGTVTP 240

Query: 246 TSESNP------------IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +  N              F  G  +     +++  G I A LQ+RD  +   Q Q+D++
Sbjct: 241 NTTWNSDPSKSTLGTLTLTFPHGGDIDLIATNSIRSGSIAANLQLRDQTLVQAQAQIDQL 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A  +  + S  D +  +S    G      +     +    +  T           + ++ 
Sbjct: 301 AASMASALS--DKVTTDSTGNGGSPNTFSLDLTGLQNGNNVQFTYTDTANKSHTITLVQV 358

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  N          +                +  +        ++     
Sbjct: 359 NDPSVLPLKNSATNNPNDEVFGVDFSQGMGPALTQLTALLGDRGLQFSSSGGQTLQISGD 418

Query: 414 NRSDSHDLHMKSQVVFNHISES 435
               +      S +   +++  
Sbjct: 419 AGGTAVVNSASSTITMTNLTSG 440



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/427 (9%), Positives = 115/427 (26%), Gaps = 8/427 (1%)

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           ++ D+     +       +        ++    +          +K+    +      + 
Sbjct: 184 SLLDQRDQYITQLSQLMDIRVLTNDRNQVTVFTNSGVQLVGSEAAKITFDAQGTVTPNTT 243

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                +        +   +    ++    +     I   +    + L +     D +   
Sbjct: 244 WNSDPSKSTLGTLTLTFPHGGDIDLIATNSIRSGSIAANLQLRDQTLVQAQAQIDQLAAS 303

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD---GTTLFETVPRDINF 237
            AS        D         +  + ++ +   NN    YT       T+      D + 
Sbjct: 304 MASALSDKVTTDSTGNGGSPNTFSLDLTGLQNGNNVQFTYTDTANKSHTITLVQVNDPSV 363

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
             + +    + ++ +F                  +        S          +     
Sbjct: 364 LPLKNSATNNPNDEVFGVDFSQGMGPALTQLTALLGDRGLQFSSSGGQTLQISGDAGGTA 423

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + + +       N  +            +        + +       R + + L      
Sbjct: 424 VVNSASSTITMTNLTSGNPQLPLFVDNGVPYTGAITATGSQQTGLAGRISVNNLLLADPS 483

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-----VTLLEYARNSIGWLE 412
                 +                  N ++   P  GI +N      T+L + +       
Sbjct: 484 RMIVYGSGTQSGDTTRSDFILSQLTNSSYYVSPQTGIGSNATPFKGTMLSFLQQFTTMQG 543

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +  S +  L     VV + +    +++ GVN+ +E++ L+ ++ +Y+ + +++     M 
Sbjct: 544 QAASSAQQLADGQNVVLSTLQNKLNSSSGVNIDDEMAHLLALQNAYSANARVMSTVKDMF 603

Query: 473 QTLLEGV 479
            +LL+ V
Sbjct: 604 DSLLQSV 610


>gi|163789663|ref|ZP_02184101.1| Flagellar hook-associated protein [Carnobacterium sp. AT7]
 gi|159875195|gb|EDP69261.1| Flagellar hook-associated protein [Carnobacterium sp. AT7]
          Length = 361

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 126/374 (33%), Gaps = 17/374 (4%)

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +SK+  S      N         V  N+E      +  + ++  + A   ++I+  + + 
Sbjct: 1   MSKVFASWTYLGSNPELATAKTMVAQNSETFTDTLHHMSNQIDNLHAGTVQDIKKNVLDF 60

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              +++L  +N  I   T+     +D LDQ+D +L ++S I G+       N + V    
Sbjct: 61  NSKVTQLDSLNKQIFNMTSQGQAPNDLLDQQDKILSELSGIAGVEATYDKFNRVSVSIGG 120

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L E    +++  K                G +  +++   +  G IK   +    + 
Sbjct: 121 QPVLTEKSIAELSVAKDPV-------------GQLTVNDKTVDITSGTIKGSQEALVEID 167

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              Q+ L+E+A     + ++     G   +   L          +               
Sbjct: 168 VKKQD-LNELAYTFATAVNKVHSDGGKGTDFFDLSETVDGNYAASIQVNKEILNDVSKIN 226

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
              N   +  G     + +  ++N                     D         T+   
Sbjct: 227 AGKNIETVVGGDGTRAQAIAALQNTKLDYSTNPLELKYNETTMTIDNQ---PGGSTVAGA 283

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             +S+  +   +  S ++      + + +     +  GV++ EE++  I  + ++  +++
Sbjct: 284 YNDSVTQMGIVKQQSDNMVDSQGSLVSLLEARRDSVSGVSINEEVTNTITYQSAFEANSR 343

Query: 464 LIMFTDKMLQTLLE 477
           +I    +ML TL+ 
Sbjct: 344 IISVVSEMLDTLIN 357


>gi|87119670|ref|ZP_01075567.1| Flagellar hook-associated protein [Marinomonas sp. MED121]
 gi|86165146|gb|EAQ66414.1| Flagellar hook-associated protein [Marinomonas sp. MED121]
          Length = 659

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 139/400 (34%), Gaps = 12/400 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
            +++   +    +S Q  +  +N  N + + Y R+ T  +      V V + +       
Sbjct: 4   DLYSIGLSGVLASSAQIVTTGQNTANVNTEGYNRQSTNLSTLQNGGVQVGSTKRVVDEFV 63

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           +  + A +S             + + + +D     S   Y++   DSL+S + + ++   
Sbjct: 64  NTQMRADTSNFNYFESYYQQGTIADEIFSD--KATSLNTYLNNTFDSLQSVNSDPTDIGT 121

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            K    + + +V +FN  A   Q      ++++   +  +  + S++  +N  +  +   
Sbjct: 122 RKIAHTDLKNLVSHFNELASFSQDQTNLVNEQLTSNVDIINEYASQIADLNGKVLVQETV 181

Query: 184 KHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               A++  D ++ + ++ISE + +     +N+ M +   +G  L      +      + 
Sbjct: 182 GGSKANELRDSQEEIARQISEYLDVKISYDDNDLMELQLGNGQPLVLQNSVNKLSLSPSE 241

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           Y   S +  + +D         +    G I  L+  R + +      L + A V+  S +
Sbjct: 242 YD--STTYDLVLDFEEYELGIDTTDLGGSIGGLMDYRANFLEELDRNLGQQAIVISDSVN 299

Query: 303 EKDPIAGNSENVPGLFIADGIK------DLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +++ +  +     G  + D  +        ++ L   +   +        +        +
Sbjct: 300 QQNRLGLDVNGNYGKSLFDLAEIKVSQSQKNSSLIHQVDVRVEEGKASEISTDTYEIIMT 359

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            S  F     ++ G       + D        D    I  
Sbjct: 360 SSTSFELRSYDVDGSSTAPAQFYDMNQVERTPDGYFSIPG 399



 Score = 87.4 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/411 (11%), Positives = 114/411 (27%), Gaps = 18/411 (4%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA- 142
               E+         S    +    + LE   +NL +  +  +   N +  +        
Sbjct: 253 FEEYELGIDTTDLGGSIGGLMDYRANFLEELDRNLGQQAIVISDSVNQQNRLGLDVNGNY 312

Query: 143 -------REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                   E++  ++  +  +  ++           +  D  +    S           D
Sbjct: 313 GKSLFDLAEIKVSQSQKNSSLIHQVDVRVEEGKASEISTDTYEIIMTSSTSFELRSYDVD 372

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
                 ++   ++ + R  +        G          I F   +++  +  S      
Sbjct: 373 GSSTAPAQFYDMNQVERTPDGYFSIPGIGLEFNLQADEKIGFRPGDTFQFSPTSLAAANI 432

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
            ++ +S    A+             S   I  + +              DP  G  +  P
Sbjct: 433 TLISTSGDDLAMNAPIQVGNSSDNLSDAKISISSVSNTDAGFS----AFDPEGGLYQFAP 488

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                      D     G+        +   +                + +  AG    I
Sbjct: 489 QAIRFTSEDSFDVLDQDGLILAKVAGAETYVDLLAQAGLDESGYDVSLSSRPAAGDTFTI 548

Query: 376 NHYCDSFNKNFIFDPVA------GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
           +      + N+    +A       +  + +  +   +++  +    + +      S+V+ 
Sbjct: 549 SFNESGRHDNYNGRALADLQNKSLVAGSQSFADAYTSTVARIGNLTNTAKTNMESSEVMM 608

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                       V+L EE   LI+ + SY  S+++I   +K  QTLL  ++
Sbjct: 609 EQSIARRDEVSAVSLDEEAVNLIRYQNSYAASSQVISAAEKSFQTLLNSLR 659


>gi|225849153|ref|YP_002729317.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643172|gb|ACN98222.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 409

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/479 (10%), Positives = 126/479 (26%), Gaps = 71/479 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L  F  A +  N   +    I  NI N +   +                          
Sbjct: 1   MLQSFYTAVSGLNGNQKWIDVISDNIANVNTIGFKSERVTFEDLVAKSLTT--------- 51

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH-YISKLRDSLESYSKNLSED 121
                 A+++    +    SF AL     +   + N+     ++   +       N    
Sbjct: 52  -----FANNTPKNMEIGGGSFIALTTKDFSQGSFQNTVNPLDLALDGEGFFMVKDNQGTV 106

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              +      +      N    ++Q  + D    I   +  +    S L  +   I    
Sbjct: 107 YYTRAGQFRLDANGDIVNVDGMKLQGWKLDTAGNISAALDKINIPYSILPSITTKINLVE 166

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +  D               S +  IS  +   N      ++  T+++++          
Sbjct: 167 PTNLD---------------SRVNTISGTIDPTNPATFNYANSMTIYDSLGNPHTLTFYF 211

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             +  +  N        V +N  + V  G ++      DS   +       ++  L    
Sbjct: 212 QKSSPNTWNVAAY----VDNNTTTPVGSGTLQ-----FDSTGKLISGSPITLSIPLTNGA 262

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +    +  +                                +  ++            K 
Sbjct: 263 TTPQTVTVDLT----------------------------QVKQVASDFIFYANQDGFAKG 294

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                +++    +   Y +   +      VA       L+    N         + S   
Sbjct: 295 DLIGVSVSEDGVVRGMYSNGKVELIARLAVATFKDKEMLVRKGNNLY----LPNTQSFTP 350

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +    + + +   +     V++ +E   LI  +++Y  + ++I   D++LQ  +   +
Sbjct: 351 IITPGGILSKVRSGFLELSNVDISKEFINLITAQRAYQANARVITTDDQILQEAMNIKR 409


>gi|83859394|ref|ZP_00952915.1| flagellar hook-associated protein FlaN, putative [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852841|gb|EAP90694.1| flagellar hook-associated protein FlaN, putative [Oceanicaulis
           alexandrii HTCC2633]
          Length = 708

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 119/400 (29%), Gaps = 8/400 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           M+L +V   A +    +     +   N+ N +   Y R +   T          V V   
Sbjct: 1   MALNSVIGNALSGLRASQLGLRTASNNVANVNTPGYARTELAITSRNVAGQGMGVDVRGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                          +S         S     +         +S    ++   DSL + +
Sbjct: 61  ERITDEYLLAASVRANSDFSAATARYSALDRLQAQFGSTSDESSIFGRLNAAFDSLSAAA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +E +   +     +         + E++ +R +AD  I   I  +   L E+  +N 
Sbjct: 121 ADSAETVARLSAASELQTFFDETQRLSVEMRTLRNEADTRIGSGIGRINEILKEMQDLNL 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
             +   AS  D     +++  LL ++S  I + T  + +  + V T+DG  L +     +
Sbjct: 181 QAQSLNASSADTSGAANRQVELLDELSSYIDVRTNRQPDGRVFVSTADGVALLDNSRLQL 240

Query: 236 NFEKMNSYTVTSESNPIF--IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +    +     +   I   +       +    +  G+++ L+ +RD  +P     L E 
Sbjct: 241 EYTPAGTGAYGLDYGEITAVVSASGARVDLTQNITSGELRGLIDLRDKDLPQLAAALAEY 300

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A     + +     A      P          +   + QG                    
Sbjct: 301 AAGAADALNAAHNDATAYPP-PNTLTGRDTSLVGADVLQGSGAATLAIVNNDGTLVQQVA 359

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                  F  +        DL+N    +   N       G
Sbjct: 360 ITVTGTGFTVDGNAANSITDLVNEINTALGGNGTASFTNG 399



 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 93/365 (25%), Gaps = 5/365 (1%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N    ++ +  I            +A  +  +  + +  +                ++ 
Sbjct: 348 VNNDGTLVQQVAITVTGTGFTVDGNAANSITDLVNEINTALGGN----GTASFTNGRLSI 403

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                      A D  +   +  +  +   G++ IV ++      T    T    +    
Sbjct: 404 DAANANHGVALAQDSANPSSIGGRGFAHYFGLNDIVDSDRPAFFETGLTATSAHGLAGGG 463

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                        +  I +     +              L       +            
Sbjct: 464 VMSFKVLGPNGGRTADIDVSVAGATIQDQLNALNAAGTGLGAYGSFGMDGNGEISFTPNA 523

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                 F          ++ +     +    +  S    +    
Sbjct: 524 GFEQYEVVVTGDTSVRTGTGKSFTTIFGMSDGARMSRAEGFEVRPAIRSDSTLLSMAKLD 583

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKN 414
                   ++   AG          +      FD    +   + TL+EY     G +   
Sbjct: 584 VTGATVPGDLVVSAGDNRGGQELAAAGQAKRTFDDAGNMKGGMSTLIEYGARVAGKVGSV 643

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + +      ++ V        S+  GV+L EEL+ +I+ +QSYN + +L+    +M  T
Sbjct: 644 AAAAQRAETAAESVKEAADIKRSDVEGVSLDEELARMIQFQQSYNAAARLLQAAREMSDT 703

Query: 475 LLEGV 479
           L+  V
Sbjct: 704 LINIV 708


>gi|32266375|ref|NP_860407.1| flagellar hook-associated protein FlgK [Helicobacter hepaticus ATCC
           51449]
 gi|32262425|gb|AAP77473.1| flagellar hook-associated protein FlgK [Helicobacter hepaticus ATCC
           51449]
          Length = 606

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/430 (11%), Positives = 131/430 (30%), Gaps = 28/430 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            +L+  N +                NI NA ++ Y R+  +                 V+
Sbjct: 3   GILSSLNTSYTGLQAHQLMVDVTGNNISNASDEFYSRQRVLVRPERPLYYQDYNLGRGVS 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           + T +  +           +          +           +       + + +  ++ 
Sbjct: 63  IETIQRIHDEFVFNRYRKAAEEAQYYDTHFTTLREASAFF-PEVDGVGIYNDLEEYFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  +KN ++    + +  N + +  N   +   + +++    +E+E+ I+ + R   E+ 
Sbjct: 122 KDLAKNSTDPAQKQVLAKNTQVLSTNIKDTRSRLVRLQQKVSEELEVTINEVNRIAKEIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217
            +N  +K     +    A++  D+RD L   +  +IG +    +            + D 
Sbjct: 182 HINGKLKEMEDQRELKQANELRDRRDELEYNLQTLIGANVFKNHLDSNASIHPKLADFDD 241

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALL 276
               + G           +   +         N ++  G    +      + +GK  +L+
Sbjct: 242 EYVLNIGFGFNIVDGAMFHPLVLKKDDNHLNLNRVYFQGDDFKTVEITDKIVQGKAGSLI 301

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
            + +S     +    +     +  F++    A N+              LD      + +
Sbjct: 302 SLYNSGAEGTRVGKIQDYINHLDIFAKGFIEATNAIYSQSAATQIRSDKLDVWSLNALVD 361

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           +     +   +       G    +   N+  +    D++    ++ + N   D  A  + 
Sbjct: 362 SNYNIKEGSFDIVVYNTQGEEIARKTINIDRITTMNDVVRAINENTDDNK--DNNALNDV 419

Query: 397 NVTLLEYARN 406
           +     Y  N
Sbjct: 420 DDYFRAYYDN 429



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 10/247 (4%)

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
             +    N+         I ID +   ++   A+ +           + V  +     + 
Sbjct: 370 SFDIVVYNTQGEEIARKTINIDRITTMNDVVRAINENTDDNKDNNALNDVDDYFRAYYDN 429

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   ++                  G   L+  L    +  I +N +Y  + + +R 
Sbjct: 430 GAREFNILAKNPSQGLYIAIQDKGSNFTGAFGLNKFLDGDDAHNIALNQEYVKDATLIRP 489

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                      +  + G  ++ N        +  F         + + EY +   G +  
Sbjct: 490 W----------LTPVNGNFEVANMMQQLQYDDVDFYINKYEKKQMRIPEYFQFLAGRVAN 539

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +         V + + + +     V+L EE+  LIK +  Y  + K+I   D+M++
Sbjct: 540 QTEATQRTKETKDAVLSAVKKEHLAISQVSLDEEMVNLIKFQGGYAANAKVITTIDRMIE 599

Query: 474 TLLEGVK 480
           TLL   +
Sbjct: 600 TLLGIKQ 606


>gi|326792655|ref|YP_004310476.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM
           5427]
 gi|326543419|gb|ADZ85278.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM
           5427]
          Length = 645

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/419 (13%), Positives = 121/419 (28%), Gaps = 21/419 (5%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVTQ 55
           FN A +    A +       NI NA    Y R+                 +   V     
Sbjct: 6   FNVALSGLFAAQRGLHVTSNNITNASTDGYSRQILGQRADTPLSGFGVGMTGTGVMTTNV 65

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +  D  L   +  +G+  +  +  +L E     +  +   T   + L +S +  S
Sbjct: 66  TRVRDSYLDLKLWTQNPKLGEYNIKVTQNSLIEGAFG-EPSDAGFTKVFNDLFNSFDEVS 124

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           K+ +      +V +N     + ++  +  +   + + + EI+  +  +    + +  +N 
Sbjct: 125 KDPTSGAAKVSVRENLISFGKYYSNISTALTGYQQNLNYEIKATVDEINILGTRIQNLNS 184

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-------MVVYTSDGTTLF 228
            I        DA+ F D+RDV + ++SE+I +                  V  +  T + 
Sbjct: 185 QIFQAEIYGDDANSFRDERDVCIDRLSELINVEAKEEEKVVEGKVLKTFSVKIAGQTFVD 244

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK--GKIKALLQIRDSVVPIF 286
                 +  E         +     + G+    N G        KI   +++    +   
Sbjct: 245 HLNLNTLGVEVRGEKEQKIDDIVNTLSGLYEKLNNGGLTVDEITKINEQIKLEQKKLTDL 304

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             +    A   I   S  +      +  P                + +     V  Q   
Sbjct: 305 TPECTIDANGSITYNSPLEGKIDVLKVNPDFSTEIKTAGDGKFNVEDVDGLYNVIWQNGL 364

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +        S   K L ++++  G  +      +                  T+ +   
Sbjct: 365 SFDMGNANLSGELKGLIDLRDGCGTAESSEVTYNGIPYYISRLNGYVRQFAQTMNDEYS 423



 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 48/171 (28%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                 E          +         G+  T         +     +     + +    
Sbjct: 469 SAGELEEIGNKYTTKYKLFSYSTGSSTGMPATGEDLVGNNYSKMTATNITISKEIYENAS 528

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
              + Y        D F         + +       +Y  +    L  N  ++       
Sbjct: 529 NMRSTYGADEESGSDLFRALSNQKDNSKMFKEGDPKDYMASIFSELGINAQEALMYQSTQ 588

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + V   I     +   V+L EE + LIK +Q+Y  S K++   D + +T +
Sbjct: 589 ESVTGIIKNQRLSVSQVDLTEEFTSLIKYQQAYQASAKIMNTIDGIYETTI 639


>gi|304397210|ref|ZP_07379089.1| flagellar hook-associated protein FlgK [Pantoea sp. aB]
 gi|304355359|gb|EFM19727.1| flagellar hook-associated protein FlgK [Pantoea sp. aB]
          Length = 549

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/398 (14%), Positives = 134/398 (33%), Gaps = 14/398 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A    ++   NI N     Y R+ T+   +             V +
Sbjct: 1   MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTVLAQANSTLQGNSYYGNGVNI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L   S+      +      +  +         S +  +     +L+
Sbjct: 61  TGVQREYDAFIATQLRGSSAN--YSAVSTQHSQISNIDDLLSTSTTSLSTSLQGFFTNLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N ++    ++++ NA+ +V  F TSA+ +  ++   + ++   I  +    S++  
Sbjct: 119 NVVSNANDPSARQSMLSNAQGLVSQFQTSAQYLNNMQNSVNADVGSSIKQVNTITSQIAD 178

Query: 173 VNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N  I K  TA+    +D LD+RD L+  ++ ++G++   + +    V  ++G TL    
Sbjct: 179 LNKQIGKLSTANGAAPNDLLDKRDQLVNTLNNVVGVTVS-QQDGGYTVSMANGLTLVNGD 237

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    +S   T  +                 +  G +  LL  R   + + QNQL 
Sbjct: 238 KSHDLVAMPSSSDPTRTTIGYVDKQAGNVEIPEKLITTGSLGGLLAFRSQDLDLAQNQLG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++A     SF++      +S    G+   +    L     +  +          ++    
Sbjct: 298 QLAAAFTTSFNDVHKQGFDSNGDQGVDFFNIGSPLVVSNSKNSTAASVTAEWTDTSALKA 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
            +         W+    +    +        +      
Sbjct: 358 TNYNVSFDGTNWSATRASDSTAVTIAQVKDASGKTTLS 395


>gi|91776309|ref|YP_546065.1| flagellar hook protein FlgE [Methylobacillus flagellatus KT]
 gi|91710296|gb|ABE50224.1| protein of unknown function DUF1078-like protein [Methylobacillus
           flagellatus KT]
          Length = 410

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 123/483 (25%), Gaps = 85/483 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------Q 55
            F +  +  N AS+    I  N+ NA    + +  T       N                
Sbjct: 2   AFQQGLSGLNAASKNIEVIGNNVANASTVGFKQSRTEFADVYANSLGGGNASKIGIGTKI 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      +    + +        F  + +                 + +   + Y 
Sbjct: 62  AAITQQFTQGNISNSQNPLDVAINGNGFFRMSDN-------GAITYSRNGQFQLDKDGYI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +N +   L    + N +            + ++R DA        +++   L        
Sbjct: 115 QNAAGQRLTGYALANGQIQT-------GALTELRIDAADMPPRTTTSITGPL-------- 159

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                          LD R  +L   +  I   +   ++  + V+ S G +    +    
Sbjct: 160 --------------NLDSRAEILDPANFDIDDPSSYNHSTPIEVFDSLGNSHSVQLYYLK 205

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +         T+ +     +G  +  N    +                            
Sbjct: 206 SGITTAPNATTTWTVMASANGSQLMPNPIGTMVF-------------------------- 239

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                           +    L                ++  +  + Q+ +  +    G 
Sbjct: 240 -----------DGSGIDPAITLAPLSIPLSSGGLTPMSVTLNLTGSTQFANTFNESDLGQ 288

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     ++  Y +  +       +A       L     N   W E + 
Sbjct: 289 DGYGAGRLSSFSIGADGSILGRYSNGRSSVLGQVALANFRNLNGLQPLGDNQ--WAETSE 346

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    + + +      +         V+L  EL  +I  ++ Y  + + I   D+++QTL
Sbjct: 347 SGPPIVGVANSGGLGVLQSYRLEDSNVDLTAELVNMITAQRVYQANAQTIKTEDQIMQTL 406

Query: 476 LEG 478
           +  
Sbjct: 407 VNL 409


>gi|302389667|ref|YP_003825488.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM
           16646]
 gi|302200295|gb|ADL07865.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM
           16646]
          Length = 404

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 113/478 (23%), Gaps = 74/478 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           N   +   I  NI N +   Y +       +                
Sbjct: 1   MMRSMFSGVTGLRNHQIKMDVIGNNIANVNTVGYKKSRVTFQDT---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + +   SSA G                 +    N     +     ++++     S + 
Sbjct: 45  LSQTMRGASSAQG-----------------NRGGTNPMQIGLGMTIAAIDTIHTPTSLEA 87

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                         N    A E       +D +             E   + +       
Sbjct: 88  ------------TGNMTDLAIEGDGFFILSDGQGYYYTRAGNFGFDEQGNLVNTANGFKV 135

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                      +D+    I + + +     +        +            I F+  +S
Sbjct: 136 MGWQDSSSKTPQDIKPINIQKGMLMPAKPTDIVVFAKNLN-----KADQVVTIPFKVYDS 190

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                     F +    + +   +                       L  ++        
Sbjct: 191 LGRAHNLTITFTNNGDNTWDYDISFD-------------------PTLISVSSGSDTGTL 231

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             DP    S       I      +        +       QY    +      +      
Sbjct: 232 AFDPNGNLSGGST---INSVTLTIVGANPITFTPDFSNVTQYAKETTVDLSYQNGYPAGT 288

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     +   + +          +A  N    L++  RN   +   N S    + 
Sbjct: 289 LLGISVDSTGTITGVFDNGQTMELAQVALAVFNNPAGLMKAGRNMYTY--SNNSGEPQIG 346

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +        IS        V+L EE + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 347 LAGTGGRGTISPGSLEMSNVDLAEEFTQMIITQRGFQANSRVITASDEMLQELVNIKR 404


>gi|206603146|gb|EDZ39626.1| Probable flagellar hook protein FlgE [Leptospirillum sp. Group II
           '5-way CG']
          Length = 457

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/493 (11%), Positives = 128/493 (25%), Gaps = 57/493 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           M +L+    A +  N      + I  NI N +   + +   +                  
Sbjct: 1   MGVLSSMYVATSGLNAMGTDMSVIGNNITNLNTVGFKQGRAVFANVYGQTMTGRSNTVNT 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V   +          + A ++A+        F  +                 
Sbjct: 61  SQPGSGVYVDAIQQ---EFTQGSVQASTNALDLAIQGNGFLTV------RSKDGQKFYTR 111

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             +L         + S   L            Q +     ++Q I +D            
Sbjct: 112 NGELALDKTGRIVDTSNRAL------------QGYMNKNGKIQPILSDIRVPQTTVPPKA 159

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +     ++  +  K     +     +  D L  +                    T D
Sbjct: 160 TQNVFSRINLDAGMTEKLKEGREFEKSSNIFDSLGIQHLLTYKFIPTSVAGQWAFQATMD 219

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G +L       I++  +   T  +    + +     +    S    G           V 
Sbjct: 220 GASL-TKGGGSISYPPLGRKTPKTLKGIVGLIQFDGNGIVKSVNYGGSPL-KRDANGVVH 277

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
            ++Q  L + A   +                         + +      G+++ +    Q
Sbjct: 278 ALYQTTLADKAATPVSFDVVIPTKG---------------QTIRPNRINGVTQQVLQLTQ 322

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
           + +  S + +     K    N   ++    ++  + +   K      +A  N    L   
Sbjct: 323 FNAPSSTIEETQDGHKSGDLNNLAISRDGKIVGSFSNGVQKVLGVVSIASFNNPGGLASV 382

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   ++E   S   +     Q     +  +       +L  ++  +I  E+ Y  S  
Sbjct: 383 GGN--AYIESIASGVPNFGRPGQGGRGALLSNSLELSTTDLGRQMVDMITAERGYQASAS 440

Query: 464 LIMFTDKMLQTLL 476
           +I   + +L TLL
Sbjct: 441 IIATDNTILNTLL 453


>gi|319790416|ref|YP_004152049.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1]
 gi|317114918|gb|ADU97408.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1]
          Length = 522

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/540 (10%), Positives = 124/540 (22%), Gaps = 80/540 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L  F  A        +  + I  NI N +   +     +                    
Sbjct: 1   MLQSFYTAFTGLTADKRWLSIISDNIANVNTVGFKAERAVFEDLLARSLTTFKNGAPVNT 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V    +  K+         ++ +      + F  +++          +     
Sbjct: 61  EIGGGVFVS---ATVKDFSQGTFMNTNNPLDLALDGEGFFMVRDN------QGLTYYTRN 111

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
            + R        N+    +   ++D+   +    +     +             E SNL 
Sbjct: 112 GEFRLDANGDLINMLGMKVQGWMLDDNGNMAGAISNITVPMSMDPKVTKNISFEEPSNLD 171

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                +T   D     T +  ++    D              I T         VYT   
Sbjct: 172 SRADVITAQFDPANSTTYNYVNSQTVYDSLGNPHTLTYYFQKIDTGT-----WRVYTLID 226

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR----- 279
            TL      + N+ +  +    S  N +        S   +    G   A          
Sbjct: 227 GTLTPVTDGNGNYYEYVTLKFDSNGNVVSAGSDTQVSLAQNEQDTGTNGAFTLANPPVIG 286

Query: 280 ---------------------------------------DSVVPIFQNQLDEMARVLIGS 300
                                                  +      Q + D      I  
Sbjct: 287 SVHIKAIDGVTVNIHDEGDGDGDGIGNLVDENGNVVGTINYATGEIQLEGDYANSSSITV 346

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               +P A  +          G                    +  ++          + K
Sbjct: 347 DYLYNPTAATATLDYKDITITGYDPNTGAQTPFTFAVNYEKLRQLASDFIFYAQQDGNSK 406

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  ++    +   Y +   K+     +A       L+        WL      +  
Sbjct: 407 GDLMAVAVSEDGVIKATYSNGKVKDIARLAIATFKDKEMLVRKG----SWLYVPNVQTFT 462

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +    V + +         V++  E   LI  ++SY  + ++I   D++LQ  +   +
Sbjct: 463 PVIMPGGVISKVRSGMLEMSNVDIANEFINLITAQRSYQANARVITTDDQILQETMNIKR 522


>gi|221639489|ref|YP_002525751.1| Flagellar hook-associated protein 1 [Rhodobacter sphaeroides KD131]
 gi|221160270|gb|ACM01250.1| Flagellar hook-associated protein 1 [Rhodobacter sphaeroides KD131]
          Length = 1363

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 127/452 (28%), Gaps = 30/452 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51
           ++ + A++   +     +    NI N + + YVRR+ +                S + V 
Sbjct: 2   SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   R     +  + L     A      L +     E +        S    ++   D+L
Sbjct: 62  VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                   +  L + V+   + +  +F T A  +  +R +         +   + L +L 
Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVAGLAGQTAAEASQTLRQLA 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  +     S  +    LD+RD LL ++S  +G+           V            
Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P  +     ++  V      +       ++ Q   +  G ++       +V      +LD
Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347
            +AR L+   +       +     G  +       +         G +  +  +      
Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVTADTGNRGTGGASVVAFDTATAPG 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  L    +      ++                          + G    V+  +     
Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALPGLTLQMTGAAMDGDRLTVSPRQGRALD 412

Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435
           + +L  +       +  +   +         S
Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040202|gb|ACT56998.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 421

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/481 (12%), Positives = 131/481 (27%), Gaps = 61/481 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +L     A +  +  S + +++  NI N D   Y R     +      T  +  S   
Sbjct: 1   MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-YNNSPTHYISKLRDSLESYSKNLS 119
            +  K + +   ++             +         N +          + E + +N++
Sbjct: 61  EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +L    + NA   +   +    E   ++      +      +   L +   +    K 
Sbjct: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIITPDKT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +          RD      S      T+  +    V YT  G   +E       F +
Sbjct: 181 PKHNG---------RDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSI----FRQ 227

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S   +   N   ++ V VS +  +          +   D+                  
Sbjct: 228 DQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNT----------------- 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                       + + Q I+  I    Q        +   +   
Sbjct: 271 ----------------------------SGIDQQITIDISKTTQLAGGFIPQKSEINGHA 302

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  +++    +   Y D          +A + +   L  +  +   +L    S   
Sbjct: 303 PGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLF--DGNTYLPTRDSGDI 360

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +          I      T  V++  EL+ LI+ +++Y +++K+       +  L+   
Sbjct: 361 SIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420

Query: 480 K 480
           +
Sbjct: 421 R 421


>gi|114562342|ref|YP_749855.1| flagellar hook protein FlgE [Shewanella frigidimarina NCIMB 400]
 gi|114333635|gb|ABI71017.1| flagellar basal body FlaE domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 459

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/483 (9%), Positives = 108/483 (22%), Gaps = 36/483 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI N +   +            N              T 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNSKTAVGGGATT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+++        F      + + D             +    +Y 
Sbjct: 62  TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQS----YTRAGAFKVDSSNYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + + L    +D          T+ + ++             +          T ++ 
Sbjct: 118 VDSAGNFLQGFPVDEDGNSTSVSLTTTQPIKIPDTAGSPVQTGNVGLQMNLNVSETALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                           +  D      S  + I   +  ++ M  Y        +      
Sbjct: 178 -------------ANFNPADSDTFNNSTSVTIYDSLGESHIMTTY------FVKPTNGSY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E         + +P+ +     + +  +            +  +              
Sbjct: 219 TGESNWVAFYAVDGDPVDVASGPGTYSTDTDGDSIA-DGTGTVSAANPGGAAGTWSGAVL 277

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +                   G         Q ++       QY S         
Sbjct: 278 KFNSVGAYTGSDPAIITTEALGTGGAGALGPGADGTQTLTIKFNSPTQYSSPFEVTELTQ 337

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     +   Y +          +        L +       W     
Sbjct: 338 DGITVGRLTNVGIGSDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGN--TSWKASLD 395

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 396 SGAALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLNQTI 455

Query: 476 LEG 478
           L+ 
Sbjct: 456 LQI 458


>gi|326202856|ref|ZP_08192723.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens
           DSM 2782]
 gi|325986933|gb|EGD47762.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens
           DSM 2782]
          Length = 707

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/404 (13%), Positives = 118/404 (29%), Gaps = 23/404 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PE 48
            + +  A++    + +       N+ N     + R+  +   +                 
Sbjct: 5   FSSYEIARSGLKVSERGLFVTGHNLSNIQTPGFTRQQAIIETNPYITEYGKNGKLFQYGL 64

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              +   R       D V    ++  G            E +  +D   +     ++K  
Sbjct: 65  GADIQETRQIRHTFLDIVYRQENTIQGYWDTRSKAFHDVEAIL-NDPMGDGLQGVMNKFW 123

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DS +  SK          V    +E+V  +N    ++ K + D + EI++ I+ +    S
Sbjct: 124 DSWQELSKEPESLTARAMVRQRGQELVYYYNHIGNQLDKQQNDLNSEIQVRINEVNSITS 183

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  +N  I  +  +   A+D+ DQR++LL ++S +         +  M V       + 
Sbjct: 184 QIAKLNTQIASQEINGDKANDYRDQRNLLLDRLSILCDAEINEMQDGQMDVTLGGYYLVT 243

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +++       Y   +  +  F    +  ++    V  G +K L++ R  V  I  +
Sbjct: 244 RGQSKNL-------YVHANAEDGEFFYPKLEGTDIKINVKSGILKGLMEARGEVPGIKGS 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
             +             D  AGN        ++  I  L           I +        
Sbjct: 297 TENGTPNYRADITFAIDVSAGNDFTTLKNSLSKYIDQLKKSGLDYNVRFITMGATSDVYN 356

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                    S         L       +               A
Sbjct: 357 KTYDKNNIDSMLTDLTASALLEEGSATDGSFKDLVDKLTALNNA 400



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/421 (10%), Positives = 121/421 (28%), Gaps = 35/421 (8%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           G               + D    N  T   + L   ++   K+  +  +    +    +V
Sbjct: 295 GSTENGTPNYRADITFAIDVSAGNDFTTLKNSLSKYIDQLKKSGLDYNVRFITMGATSDV 354

Query: 135 VQNFNT-----------SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                            +A  + +  +  D   +  +  L    +      +  +  T  
Sbjct: 355 YNKTYDKNNIDSMLTDLTASALLEEGSATDGSFKDLVDKLTALNNAPAGFREDAEKYTYV 414

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
             +     D           +  ++++   N  + V T+             N E   S 
Sbjct: 415 FTNKSINGDSPAADAFIGDAVNYVNSLKAMNMKVNVITNPAYYTNGKPDASSNPEAGWSI 474

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIK--------ALLQIRDSVVPIFQNQLDEMAR 295
             +     +      ++  +                    +    ++V   + +L+ M  
Sbjct: 475 IASGTGGSLANINGSLAGYESMFKGWNDNLVQTVKDALGNIPPSLNIVSDIKTKLNAMLN 534

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            ++   +         +   G+   + I          +  +  +      N        
Sbjct: 535 RMVNEINALQMSGTTLDGKTGVAFFEVIDSNYPFEMGNLKLSDALLSDSGLN-------- 586

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +     G   +     +  + + + +       NV++ EY RN I  L    
Sbjct: 587 ----NITASKTGAKGDNTVAKQISNLRDVDILVNS----TGNVSIDEYYRNLILELGNGG 638

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            ++  +      V N +        GV++ EE+S ++K + +Y+ S++++   D M++T+
Sbjct: 639 MEADRIATSQATVVNAVDAQRDAISGVSMDEEMSNMMKYKFAYDASSRVLNVMDSMMETI 698

Query: 476 L 476
           +
Sbjct: 699 I 699


>gi|327543408|gb|EGF29832.1| flagellar hook-associated protein FlgK [Rhodopirellula baltica
           WH47]
          Length = 562

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/471 (12%), Positives = 135/471 (28%), Gaps = 34/471 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L     +++   + A      +  NI NA+ + Y+R+    T +             V
Sbjct: 1   MGLFGTIQQSKGALDAAQIGLQVVGNNIANANTEGYIRQRLEQTPAVAYRQGNLIQGHGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                         + +    +A      L S     E +   D          S   ++
Sbjct: 61  RATGVVQVIDQQLAERMFNAKTAAAGADSLSSAYGQLETL-ITDLDGGGLNEQFSLFNNA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L   S   ++    + VI   E +  +         +++   + E++   + + R    +
Sbjct: 120 LHDLSTQPNDAATREFVIIQGEALATSMKQIRTRAGELQDGWNAEVDEAATQINRLTERI 179

Query: 171 TVVNDAIKFKTASKH---DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N  I           DA    DQR   L++++  + I+   + + ++ V+      +
Sbjct: 180 AQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASGNVSVFVGGDYLI 239

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +   R++     ++Y   +    + I    V ++       GK+ A ++ R  V   + 
Sbjct: 240 ADGNRREV----YSAYDEDAGGLEVRI----VDTDAPLKAKGGKLGAAIEARGGVFGDYV 291

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN---------KLCQGISETI 338
             LD+MA  LI   +              L  ++  +                      I
Sbjct: 292 ENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSFDFNI 351

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   + + +      +         +A    +            +        +  
Sbjct: 352 VDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSATSKF 411

Query: 399 TLLEYARNSIGWLEKN---RSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
           T  E     +     N      S      + VV + I     +  G+N   
Sbjct: 412 TFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNGGINADT 462



 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/411 (9%), Positives = 109/411 (26%), Gaps = 17/411 (4%)

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           A +        +         +       +  T    +    LE  +  ++ +   +   
Sbjct: 168 AATQINRLTERIAQLNVEIATIEGGGTLGSDATGLRDQRYRDLEELASYVNINFQEQASG 227

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIEL-EISNLRRFLSELTVVNDAIKFKTASKHDA 187
           + +  V  ++  +    +++ +  D++    E+  +                  A     
Sbjct: 228 NVSVFVGGDYLIADGNRREVYSAYDEDAGGLEVRIVDTDAPLKAKGGKLGAAIEARGGVF 287

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
            D+++  D +   +   +                    T    VP +           + 
Sbjct: 288 GDYVENLDQMAAALIRGVNSVHSQGQGRTGFSSLVSSNTSEPGVPLNAAELPFEPNNGSF 347

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           + N +   G ++S+ + +    G I                 +            + D  
Sbjct: 348 DFNIVDTSGELISTTRINVRNLGTIDDSTISSIVADINAVEGVTASISGDGRVRIDSDSA 407

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                             L+       +  I VN   + +   L                
Sbjct: 408 TSKFTFGEDTSGFLAAAGLNTFFTGSSAVDIAVNSVVKDDIDLLAISNG----------G 457

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +    + + +  D  ++            N ++      +I  L +  S           
Sbjct: 458 INADTNTLYNLLDIVDEPLDEL------GNRSIRGMHEQAISTLGREISVQKSATDGLND 511

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++  +   +    GVN+ EE   +I  ++++  S+++I    +ML  LL  
Sbjct: 512 LYASLQSQHLAITGVNIDEESIKMISYQRAFQASSRVISTAAEMLDILLAI 562


>gi|255654320|ref|ZP_05399729.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-23m63]
          Length = 315

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 137/373 (36%), Gaps = 61/373 (16%)

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                ES SK+++ D     V++NA  +    + S +++ K++ D D  I+ EI  +   
Sbjct: 3   FFKGWESLSKDINSDSKKSLVVENASNLATLISESYKKLDKLKGDIDSNIDTEIKQINEM 62

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           L  L  +N +I   + S    +D LD+RD +L  +S  +        N            
Sbjct: 63  LKSLEDLNKSIDIISGSGSMPNDLLDERDRILDNLSFKLDFENSDVKNMLAD-------- 114

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
                                    + ++ +  +         G ++ L ++    +  +
Sbjct: 115 -----------------------GKLELNELKNADGTWKTGVSGTLQGLFEMH-GKIDTY 150

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           ++ L +++  L    ++    +              ++D          + I VNP  +S
Sbjct: 151 KSDLKDVSDGLAKQINDVYNTSAGIT----------VRDFFVTSNVDGEDIIKVNPAIKS 200

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           NP+ L+     + K                    +  K+   D         T+ ++ + 
Sbjct: 201 NPNELKLTADEASKI-------------------AKLKDEKIDIGVAGGKVSTISDHYKA 241

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
               +  +    +   +  + + N+I  S  +  GV+L EE++ LIK+++SY  S K++ 
Sbjct: 242 FAELVGLDSKKVNQDEVNQRKIINNIDNSRMSVSGVSLDEEMTELIKIQRSYQASAKVMS 301

Query: 467 FTDKMLQTLLEGV 479
              ++L  ++ G+
Sbjct: 302 TAVQLLDVVINGI 314


>gi|163750570|ref|ZP_02157808.1| flagellar hook protein [Shewanella benthica KT99]
 gi|161329725|gb|EDQ00714.1| flagellar hook protein [Shewanella benthica KT99]
          Length = 455

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/483 (12%), Positives = 132/483 (27%), Gaps = 40/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI N ++  +            N             VT 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANGKTAVGGGVTT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++A+        F      + A DH            + +   Y 
Sbjct: 62  SQIAQQFHQGSLQFTNNALDLAINGGGFFVTSSELEAKDHS----FTRAGAFKVNSADYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D          T+ + V+        +    I       +  + ++ 
Sbjct: 118 VDSQGNYLQTFPVDKDGNSTSVSLTTTKPVRIPDTAGSPQKTENIGIQMNLNAADSSLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           A+    A+  D ++      +        I  +  VR  N   +  S+    +    + +
Sbjct: 178 AL--FDANDRDTYNNSTAVTMYDSLGEPHILTTYFVRPPNAAYIGESNWVAFYAVDGQRV 235

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +  +  +Y           DGV    +  +    G   A+++  D+   I  N    +  
Sbjct: 236 DLAEAGTYDQDDNG-----DGVANVRSTAAVTAGGWKGAVIKFNDTGAHIATNPDPILTV 290

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L       + +   ++                   Q ++       QY S         
Sbjct: 291 PLGVGVGSANVLGPGTDG-----------------SQTLTIAFNNPTQYASTFEVTELNQ 333

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +A       L +       W     
Sbjct: 334 DGTTVGRLTNVEVGADGLINASYSNGTTVALARVALARFANEQGLTQVGN--TSWKASQD 391

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  +L  LI  ++++  S++ +   + + QT+
Sbjct: 392 SGQALAGEANSGTFGSIRSSALEQSNVDLTTQLVNLISAQRNFQASSRTLEVNNTLQQTI 451

Query: 476 LEG 478
           L+ 
Sbjct: 452 LQI 454


>gi|218886899|ref|YP_002436220.1| hypothetical protein DvMF_1808 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757853|gb|ACL08752.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 501

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/505 (8%), Positives = 114/505 (22%), Gaps = 32/505 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +L             +Q   ++  N+ N +   + ++  +              +     
Sbjct: 1   MLRALYSGATGMKTLAQGMQAVSNNLANVNTVGFKQQQALFEDLMSQYAGTGNSASTSIS 60

Query: 61  ------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  + D        +      +       +          +        R      
Sbjct: 61  QVGLGSRLTDIRTVYGQGSYESGTDITDLSINGKGFFQVSLGGKTHYTRAGNFRFDKGGN 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + +  +L    I N  E      +        R     +    I+ L    S     +
Sbjct: 121 LVDPNGFVLNGRAITNGVEGATGPISLPPGADG-RNVMPAKATTSITALNNLGSGDRSSD 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A  + +                     + I +     N +D+ +Y            + 
Sbjct: 180 AANPYFSLLSKWNGTAQSPLGDSAYTYKQSIKVYDATGNAHDVTIYFDGAG--QSGGNKH 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
             F                    ++ S   +    G++  +     +            A
Sbjct: 238 FEFVVSMDPAHDGSGMAGTSAAGLLMSGTLTFNSSGQLVNMSAYTPTGTDATNLSNWAPA 297

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC--------------- 339
                   +      +      + +  G+         G                     
Sbjct: 298 SFGADGLPQFTATFASGGGTQVVGLDLGLTSSTGAWTAGAGSPAAVGSNASNLMGMGGAT 357

Query: 340 ----VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                   Y  + S +R       +      +++    +   Y +  N +     +    
Sbjct: 358 LAAVSTTAYGGSSSEIRSKQDGYAQGFLAGIDISADGIITGRYSNGQNDDLYHITLYRFT 417

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +   L         +     S +    +     +  ++        V+++ E   +I  +
Sbjct: 418 SEDGLRR--EGMNHFSATLESGAAQEGLPDTQNYGTVAAKSLEQSNVSMEREFVNMIIYQ 475

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  ++K IM  D M+Q  LE  +
Sbjct: 476 RGFQTNSKSIMTADSMIQKALELKR 500


>gi|148258439|ref|YP_001243024.1| putative flagellar hook-associated protein [Bradyrhizobium sp.
           BTAi1]
 gi|146410612|gb|ABQ39118.1| putative flagellar hook-associated protein [Bradyrhizobium sp.
           BTAi1]
          Length = 599

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 139/423 (32%), Gaps = 5/423 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRSEN 59
           L   FN A            ++ +N+ N+    Y RR   T  +      V V       
Sbjct: 2   LTNAFNTATAGLQTLQVAIGTVSQNVANSGVAGYTRRVVSTESAGPGNSGVAVARIDRTF 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             M  K +   S+            A  + +S     +++    ++ L  SL + + N +
Sbjct: 62  DEMALKQMRLESAHAAYASAKADILAQIDKLSGKPADSSALDARLNGLAKSLLALASNGA 121

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                 TV+D A  +       A  +Q +R  A+K +  E+S     L+ +  +N     
Sbjct: 122 SASSRSTVVDAASVLADKIRGMADALQAMRDGANKRLAAEVSAADGLLTSIADLNIKATT 181

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T         LD+RD  + +++  + + +I + +  + + T+ G TL E          
Sbjct: 182 VTDD-ATRVGILDRRDQQITELARYMEVKSIRQRDGGVTLMTASGLTLVERGAATKLSFI 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S      +    + G V      SAV  G I A L+IRD+++P  Q +LD++A  L  
Sbjct: 241 DRSPATGGGAIVATLPGGVGLELDASAVSSGSIAANLEIRDAILPRTQRRLDDLAFGLAQ 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +F+     AG       L + D  +            +           S L        
Sbjct: 301 AFTNTTVTAGRRGAGFDLRLDDVAQMQPGNTITIAVGSGDTQRTIVLVASNLASKSLDVA 360

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +    V+  A           +   +      A     VT       ++G        + 
Sbjct: 361 QPPGRVQTFAIPSAPATSQAYAAALS-TAISAAAPGLTVTSGGSNSITVGGAGIQSVTAS 419

Query: 420 DLH 422
              
Sbjct: 420 VTQ 422



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/417 (11%), Positives = 113/417 (27%), Gaps = 15/417 (3%)

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 + + +   ++S       ++       +     +  + S    S       +  
Sbjct: 194 RRDQQITELARYMEVKSIRQRDGGVTLMTASGLTLVERGAATKLSFIDRSPATGGGAIVA 253

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T+       +     S+  +       D  +      L      L             + 
Sbjct: 254 TLPGGVGLELDASAVSSGSIAANLEIRDAILPRTQRRLDDLAFGLAQAFTNTTVTAGRRG 313

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              D     DV   +    I I+    +    +V           V  ++  + ++    
Sbjct: 314 AGFDLRLD-DVAQMQPGNTITIAVGSGDTQRTIV----------LVASNLASKSLDVAQP 362

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                   I     +S   +A     I A             +     A +   + S   
Sbjct: 363 PGRVQTFAIPSAPATSQAYAAALSTAISAAAPGLTVTSGGSNSITVGGAGIQSVTASVTQ 422

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           P      +     +A  +    N L  G  +         +  +      + +   +   
Sbjct: 423 PKTAGDLSGGYPKLAVFVDGAANALVNGAMDDGPQRAGLAARLAVNTALKADTSALVAVG 482

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYARNSIGWLEKNRSDSHDL 421
            + +        Y    ++   F    G +       T++ +A++ +       + S  +
Sbjct: 483 SSPSALSRPQALYQALTSEKQGFSSPNGSSNRSPAMTTVISFAQDVVAAAGSEAAASATV 542

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  V   +    +S    VN+ EE+S LI ++ +Y  + +++    +M+  LL  
Sbjct: 543 ADQQNVAKANADAWFSKGASVNIDEEMSRLIALQTAYAANARVLTAAREMIDLLLRA 599


>gi|126175140|ref|YP_001051289.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155]
 gi|125998345|gb|ABN62420.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155]
          Length = 641

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/439 (10%), Positives = 119/439 (27%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   + S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNDLFAGMNSV 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + + NA++V  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               +  +           I    V+ +   +   G++ A+   RD  +    ++LD++A
Sbjct: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I       D          +        N +     
Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFK-----DINDPMMSLGRVAGFSGNTGNATL---- 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +  +        +        
Sbjct: 348 GVTVDDTSLLTGGAYELSFTAPATYELRDTETGTITPLTLTGSTLSGGSGFSIDIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S        +    N I 
Sbjct: 408 ASGDRFAIRPTAGASNGIE 426



 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 99/364 (27%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +    G  +   A  V  NFN    +   +       I  +I++    L  +   +  
Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSGN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T         L          +              +   T  G+TL       I+
Sbjct: 342 TGNATLGVTVDDTSLLTGGAYELSFTAPATYELRDTETGTITPLTLTGSTLSGGSGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I          Q+      
Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +     +  +  +    +    +  D       + T    P   +          
Sbjct: 461 NRNAANFPVTGSELTIKLDTTVVPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDSK 520

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +     N   TL +   N+   +     
Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLEIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ V+        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 SSVR 641


>gi|229591865|ref|YP_002873984.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens
           SBW25]
 gi|229363731|emb|CAY51133.1| putative flagellar hook-associated protein [Pseudomonas fluorescens
           SBW25]
          Length = 682

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 119/335 (35%), Gaps = 15/335 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N   +  N A    + +  NI NA+   Y R+ T+ + +              T+  
Sbjct: 2   SLLNIGMSGLNAAQGSLSVLSNNIANANTAGYSRQQTIQSANASNQYGGVFIGSGTTLAD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R       D      +S           + +  +           +  +S    ++++ 
Sbjct: 62  VRRVYNEYLDTAYQNSTSLNS--DAKAYLDQVSAVDKTLSDKTTGMSSVLSSFFAAVQTA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S+    + ++ +A+ +   FN+ + ++ + +   + ++      + +  S +  +N
Sbjct: 120 SANPSDTSARQILLTSAQTLSNRFNSISSQLSQQKETINSQLTSLTDQVNQLTSSIASLN 179

Query: 175 DAIKFKTASKHDAHD-FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             I     S +      LD R   ++ ++E+IG++     N    V T  G +L     R
Sbjct: 180 KQITQVQGSSNTTPANLLDARAEAVRSLNELIGVNASE-KNGVFSVSTGTGQSLV-LGDR 237

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 + S + TS+           + + G+ +  G I  LL+ R  V+    N L  +
Sbjct: 238 SNTLSAVPSKSDTSQYTIQMNASGGTAMDLGNVISGGSIGGLLRYRSDVLMPAINDLGRI 297

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           A V   + + +     +     G  +   I    +
Sbjct: 298 AIVTADTINSQLGQGIDLNGEFGSSMFKDINSAAS 332



 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/443 (8%), Positives = 108/443 (24%), Gaps = 10/443 (2%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
             + T+   +     +      +      +L   S  +          A+    + +   
Sbjct: 250 TSQYTIQMNASGGTAMDLGNVISGGSIGGLLRYRSDVLMPAINDLGRIAIVTADTINSQL 309

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                    +   S+     + +   L        + V     T      K+     K  
Sbjct: 310 GQGIDLN-GEFGSSMFKDINSAASVALRSLSAQGNQGVGSLGVTIKDT-SKLTNFDYKVT 367

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             + ++L +   E +       F  ++   +       ++    +            +  
Sbjct: 368 FSDPADLNKVTVERSDGKAMGAFDISATPPSVIDGFTLELTNGPMQAGDSFKVSPTASGA 427

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
             + T             +  E   +   T    P  +            +  G   A L
Sbjct: 428 QDIGTVLNDPSKIAFAAPLKGEASKTNQGTGSFTPPTL-------TLPLDIQGGATTAQL 480

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++        +    + A     S++  D       +   +        ++  +      
Sbjct: 481 RVGIENSMPVKMVFGKPAADGTQSYTLNDAKGDPIGSGTIIPGQANKITVNVPMRDASGA 540

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            +     +  + +                              +   K  +     G   
Sbjct: 541 LVVPAKSFGFDTTVAGSPTDGDSTTFSFNATGVSDNRNAQQLLNLQTKATVGVATDGTGG 600

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             +L+      +  +    + +      +  +      + ++   VNL EE   +IK +Q
Sbjct: 601 T-SLVGANSKLVSTVGAKAAAATTDTTATNALLTANKNARNSVSQVNLDEEAGDMIKFQQ 659

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
            Y  S+++I    +   TL+  +
Sbjct: 660 YYTASSQIIKAAQETFSTLINSL 682


>gi|294339836|emb|CAZ88199.1| putative flagellar hook-associated protein FlgK [Thiomonas sp. 3As]
          Length = 667

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/398 (13%), Positives = 126/398 (31%), Gaps = 15/398 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
            +  + N A      A         NI N +   Y R   + +                 
Sbjct: 3   GISGLLNNALTGLQAAQSALQVTGNNIANVNTPGYSRETAVQSTLTPSLYGGQYLGNGTQ 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +        +     + + ++       L +       + A      S T         +
Sbjct: 63  IDAVTRSYNSYLQSQVWSTAATASGANTLNTQIQPIANLIAGTDSGLS-TSINKFFASGV 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              + N ++    +++I  ++ + Q   TSA+++Q   +  ++++   ++ +     ++ 
Sbjct: 122 AQVAANPADLPSRQSLISQSQSLAQTIQTSAQQLQSAASGVNQQLGQSVTAINSLTQQIA 181

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  I   + +    +  LDQRD L+ ++S  +G++ + +  N + V+T +G  L    
Sbjct: 182 QLNVQINTLSGAGSTPNSLLDQRDQLITQLSGQVGVTVLPQGGNQVNVFTGNGQVLVAGA 241

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    ++Y  +        +G V+S              LLQ R  V+   QN L 
Sbjct: 242 QSFDLKTTPSAYDPSQLEVAYASNGAVLSQCLQGGTL----GGLLQFRSQVLQPAQNALG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L  + + +     +     G  +                  +       +N    
Sbjct: 298 RIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVISGSVVDANALTT 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
            D         W+V NL+    +      +     + +
Sbjct: 358 ADYRLNYDGSNWSVTNLSSGQPVSGATVGTSGSATVLN 395



 Score = 43.5 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/415 (7%), Positives = 96/415 (23%), Gaps = 5/415 (1%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA---LKEMMSADDHY 96
                     V V   +S +              +                 +       
Sbjct: 226 QVNVFTGNGQVLVAGAQSFDLKTTPSAYDPSQLEVAYASNGAVLSQCLQGGTLGGLLQFR 285

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +       + L    +  +  ++        ++             + +       +  I
Sbjct: 286 SQVLQPAQNALGRIADGLASAMNSQQAQGLDLNGQFGAALFQAGPVQVLASSANTGNAVI 345

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
              + +     +    +N      + +   +   +    V     + ++    +  N + 
Sbjct: 346 SGSVVDANALTTADYRLNYDGSNWSVTNLSSGQPVSGATVGTSGSATVLNFDGVQVNVSG 405

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                 +   +  T    +NF+ + +      +   ++       +            L 
Sbjct: 406 AQA--GNSFEVQPTRYGALNFQSVLTNPTQIAAASPYVSSAGQMLSGSLVNTNLGNLTLS 463

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             + S        +   A V             +      +  +     L +        
Sbjct: 464 AGQYSATSGAGALVISGASVPTPLQVTLTSGGTSGAVGFQVTQSGSATVLASGSLSLGGS 523

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
              ++  Y +NP       +++     +       P    +  ++     +       + 
Sbjct: 524 GQVLSIPYANNPPGGYWNVTLAGSTAVSGDAFTLSPASGGNGGNAQAMAALQTAKTLESG 583

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           + +L       +  +    + +      +  V    S +  +  GVNL EE + L
Sbjct: 584 STSLEGAYSQLVSQVATQGNQAQSALSAASAVAAQASAAQQSVSGVNLDEEATNL 638


>gi|238924161|ref|YP_002937677.1| flagellar hook protein [Eubacterium rectale ATCC 33656]
 gi|238875836|gb|ACR75543.1| flagellar hook protein [Eubacterium rectale ATCC 33656]
          Length = 477

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/484 (9%), Positives = 123/484 (25%), Gaps = 13/484 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N + + +       +      T         N 
Sbjct: 1   MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTTSGA---SAGNG 57

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                  ++  IG      +         + +   N     ++    +      + +  +
Sbjct: 58  AAGTGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRL 117

Query: 123 LGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
             +      +       + +   +Q  + DA   +   I +    L  ++        + 
Sbjct: 118 FTRAGDFYVDGNGYLCMSSTGYTLQGWQVDAKGTV---IKDTVSSLQVMSSATKTSAPEA 174

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +K      LD+ D        II I        +         T  +        + ++
Sbjct: 175 TTKAYVSGVLDKNDAQAADTGRIITIGFFDDLGYNYTAKFGIKKTNTDGTYDVTLKDIVD 234

Query: 242 S-----YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           S     + V  + N I   G    +           + + +    V    +     ++  
Sbjct: 235 SKGNSIFDVDKDGNFITSQGPNGQTMYSYKGRAVDPQTIFEDASLVFDQSEGTFTSISSA 294

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              +    +                   +++    + ++               L+  G 
Sbjct: 295 NSPAAKTINLNLSVLNTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGDLQGDGK 354

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      ++    +   Y +          VA       L +   N       +  
Sbjct: 355 GKALGALTGITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSGE 414

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   S      IS        V+L  + + +I  ++ +  ++++I  +D +L+ L+
Sbjct: 415 FDGIGVEISADG-GSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELI 473

Query: 477 EGVK 480
              +
Sbjct: 474 NLKR 477


>gi|127512279|ref|YP_001093476.1| flagellar hook protein FlgE [Shewanella loihica PV-4]
 gi|126637574|gb|ABO23217.1| flagellar basal body FlaE domain protein [Shewanella loihica PV-4]
          Length = 453

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/483 (10%), Positives = 109/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +    A +   +   NI N +   +                          VT 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVTT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   S+A+        F      + + D             +   +SY 
Sbjct: 62  AQVAQQFQQGSLQFTSNALDMAINGGGFFVTSSEVGSQDLS----YTRAGAFKVDADSYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N + + L    +D          T+ + V+        +    I               
Sbjct: 118 VNSAGNYLQTFPVDKDGNSTSVSLTTTQPVKIPDTAGSPQKTDNIG-------------I 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +              +  D      S  + +   +   + +  Y               
Sbjct: 165 QMNLNAGEGTLDPANFNPNDPDTYNNSTSVTMYDSLGEPHILTTY------FVRPPEAAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                       +   + + G   +  + +            +  S         ++   
Sbjct: 219 TGTSNWVAFYAVDGKQVDLAGAAGTYGRDTTGDGVADSTGTAVNASGWKGSVLSFNDTGA 278

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +                    +        Q ++       QY S         
Sbjct: 279 YTGSDPAVITTETLGVGGA-------NVLGPGTDGSQTLTLNFNSPTQYASPFEVTELSQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +A  +    L +       W E   
Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALARFSNEQGLTQVGN--TSWKESLD 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTV 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|269138582|ref|YP_003295282.1| flagellar hook protein [Edwardsiella tarda EIB202]
 gi|267984242|gb|ACY84071.1| flagellar hook protein [Edwardsiella tarda EIB202]
 gi|304558592|gb|ADM41256.1| Flagellar hook protein FlgE [Edwardsiella tarda FL6-60]
          Length = 410

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 113/476 (23%), Gaps = 71/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS Q   I  NI N+    +               V    T  S N++ 
Sbjct: 2   GFSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +      Q F  +++         +       +     + +  N     
Sbjct: 62  KDGTTTTTNRGLDVAISGQGFFRMQD------PNGSVYYTRNGQFSKDAKGFLTNAQGMY 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                                    +        A
Sbjct: 116 LTGYPAAGTPPTIQQGAD-----------------------------PVPIQIPTGLMPA 146

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                   +   +   + + + +       ++       +   +L      ++ F K  S
Sbjct: 147 KASTQGTMVLNLNSANKAVDKTVAFDPSKVDSYTYATSMTTYDSLGNVHNMNLYFVKGES 206

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +    +  +  +   G     G +                              
Sbjct: 207 TTTAPITTTWKVYSIDSADPAGKPQDAGDL------------------------------ 236

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     ++    L +     +        +  T         +           K   
Sbjct: 237 TFDSNGELAKGTAPLTLNMAASNGAPAQTFKLDFTGTRQQNTGKD-GVTSKTQDGYKAGE 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A       L+    N   W E  +S    + 
Sbjct: 296 LTGYQINDDGTITGSYTNQQKQLLGQIVMANFAAPEGLVSEGNNV--WSESAKSGQPIVG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    ++        V+L ++L  +I  +++Y  + + I   D++LQTL+  
Sbjct: 354 TSGTSGLGSLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVNL 409


>gi|121997319|ref|YP_001002106.1| flagellar basal body FlaE domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121588724|gb|ABM61304.1| flagellar basal body FlaE domain protein [Halorhodospira halophila
           SL1]
          Length = 418

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/477 (8%), Positives = 116/477 (24%), Gaps = 65/477 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSENKN 61
            FN +    N+AS+   +   N+ NA    +              P  +  +     ++ 
Sbjct: 2   SFNISLTGINSASKDLETTSNNLANAGTTGFKESRAEFNDLFAMGPMGIPQLAVGQGSRL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                + +  S                     +           +     + Y  N +  
Sbjct: 62  ANVGQMFSQGS-FDFTERSLDLGIEGRGFFRMEDDGEVSYTRAGQFEVDRDGYIVNNTGK 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L        +E          ++Q             +       ++  V+++ + F  
Sbjct: 121 RLTG---FQTDEDGSRIGDGRDQLQLPTDGIPARASENVEIAANLSADADVIDEGVAFDP 177

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                  +         Q  +           NN+  VYT       +    D   +   
Sbjct: 178 DDNETFTESTTTTLYDSQGSARDATFYFRKVGNNEWDVYTQVDGV--DYEQADTEGDYFG 235

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            + ++ +++   +D       + +++    + A +   D  +                  
Sbjct: 236 PHRLSFDTSGSLVDAEGDDEGRIASLEDVPLLAEVDDLDLDID----------------- 278

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                                                    Q+    +            
Sbjct: 279 ------------------------------------FGEMTQFARPFNVTNVSQDGYAAG 302

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
            +   N+ G   ++  Y +   +      +    +   L         W     +    +
Sbjct: 303 EFENINVEGDGTILARYSNGEAQAVGQVALTSFPSEEKLQSVGE--TSWQATRDAGDPLI 360

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +  Q  F  +         V + ++L  +I  +++++ + +++   D++ Q +L  
Sbjct: 361 GVPGQGQFGRVENGALEQSNVEVSDQLVNMITAQRNFSANAQMVSTQDQVTQEILNI 417


>gi|153001466|ref|YP_001367147.1| flagellar hook-associated protein FlgK [Shewanella baltica OS185]
 gi|151366084|gb|ABS09084.1| flagellar hook-associated protein FlgK [Shewanella baltica OS185]
          Length = 641

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 110/352 (31%), Gaps = 17/352 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNDLFSGLNSV 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + + NA++V  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               +  +           I    V+ +   +   G++ A+   RD  +    ++LD++A
Sbjct: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             +  +F++      +     G  I   I D    L +    +         
Sbjct: 297 LGVADNFNKMQAQGIDLNGQLGANIFKDINDPMMSLGRAAGFSGNTGNATLG 348



 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 98/364 (26%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +    G  +   A  V  NFN    +   +       I  +I++    L      +  
Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQLGANIFKDINDPMMSLGRAAGFSGN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T         L          +              +   T  G+ L       I+
Sbjct: 342 TGNATLGVTIDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSILSGGSGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I          Q+      
Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +     +  +  +    +    +  D       + T    P   +         +
Sbjct: 461 NRNAANFPVTGSELTIKLDTTVLPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +     +   TL +   N+   +     
Sbjct: 521 AAA---ANDRFTFDLSFAEGDNSNAVAMAKLSESKVMNSGKSTLADVFENTKLDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ V+        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 SSVR 641


>gi|294140185|ref|YP_003556163.1| flagellar hook protein FlgE [Shewanella violacea DSS12]
 gi|293326654|dbj|BAJ01385.1| flagellar hook protein FlgE [Shewanella violacea DSS12]
          Length = 453

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 111/483 (22%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A +   +   NI N ++  +       +    N             VT 
Sbjct: 2   SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFSDVYANSIFSNSKTAVGGGVTT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++A+        F      +S  +             +    +Y 
Sbjct: 62  SQVAQQFHQGSMQFTNNALDMAINGGGFFVTSSDLSGKEQS----FTRAGAFKVDSSNYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D          T+ + V         +    I               
Sbjct: 118 VDSQGNFLQTFPVDKDGNSTSVSLTTTKPVTIPDTAGSPQKTENIG-------------I 164

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +    A         D  D      S  + +   +   + M  Y               
Sbjct: 165 QMNLNAADSTLDPALFDPNDRDTYNNSTAVTMYDSLGEPHIMTTY------FVRPPNAAY 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E         +   + +DG   S    +            +          + +++  
Sbjct: 219 TGESNWVAFYAVDGKQVDLDGAAGSYQTDTNADGAPDGTGTAVTAGGWKGAVIKFNDIGS 278

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +     A              +        Q ++       QY S         
Sbjct: 279 YTTSDPATIKTQALGVGGAG-------VLGPGTDGTQTLTIDFNNPTQYASTFEVTELNQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         +     +   Y +          +A       L +       W     
Sbjct: 332 DGTTVGRLTNVEVGADGLINASYSNGTTVALARVALARFANEQGLTQVGN--TSWKASQD 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT+
Sbjct: 390 SGLALAGEANTGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTI 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|317011316|gb|ADU85063.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           SouthAfrica7]
          Length = 606

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMMDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHNIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNKDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHNIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     ++    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNKDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|254524254|ref|ZP_05136309.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14]
 gi|219721845|gb|EED40370.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14]
          Length = 407

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+   +    N+ N +   +                   ++   +    
Sbjct: 2   GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61

Query: 66  VLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A     G   Q           E     +             +     +  N     
Sbjct: 62  SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGFVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     +       +      ++                                     
Sbjct: 122 LQVFAPNADGTNFDSGRIVDLQLL------------------------------------ 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D   ++ SE+    T+  N     V T D T               +S
Sbjct: 146 ----------TTDSAPKQTSEVKVGFTLPANAKPPTVTTFDPTDSNTYNHSSGGITVYDS 195

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V+      F+ G   +         G+                            +  
Sbjct: 196 LGVSHIQVSYFVKGANPNEWTVRNYVDGQPAGTP-----------------------TPV 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D          G                 ++  I  + QY    +             
Sbjct: 233 TFDNSGKLIAPTDGKVSLGTFTPNTGAGQLNMTLDITGSTQYGEKFALRNTQQDGYAAGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   ++    +   Y +  +K      +   N    L     N   W++   S +    
Sbjct: 293 LNEITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNL--WVDTFSSGTPRTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           M        I         V+L E+L  +I  ++++  + ++I   D++ QT++  
Sbjct: 351 MPDTSNLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVINI 406


>gi|190574263|ref|YP_001972108.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia K279a]
 gi|190012185|emb|CAQ45808.1| putative flagellar hook protein [Stenotrophomonas maltophilia
           K279a]
          Length = 407

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+   +    N+ N +   +                   ++   +    
Sbjct: 2   GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61

Query: 66  VLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A     G   Q           E     +             +     Y  N     
Sbjct: 62  SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     +              ++                                     
Sbjct: 122 LQVFAPNADGTNFDAGRMVDLQLL------------------------------------ 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D   ++ SE+    T+  N     V T D T               +S
Sbjct: 146 ----------TTDSPPKQTSEVKVGFTLPANAKQPTVTTFDPTDSNSYNHSSGGITVYDS 195

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V+      F+ G   +         G+                            +  
Sbjct: 196 LGVSHIQVSYFVKGANPNEWTVRNYVDGQPAG-----------------------APTPV 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     +    G                 ++  +  + QY    +             
Sbjct: 233 TFDNSGKLTAPADGKVSLGTFTPTTGAGVLNMTLDVSGSTQYGEKFALRNTQQDGYAAGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   ++    +   Y +  +K      +   N    L     N   W++   S +    
Sbjct: 293 LNEITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNL--WVDTFSSGTPRTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           M        I         V+L E+L  +I  ++++  + ++I   D++ QT++  
Sbjct: 351 MPDTSNLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVINI 406


>gi|312879808|ref|ZP_07739608.1| flagellar hook-associated protein FlgK [Aminomonas paucivorans DSM
           12260]
 gi|310783099|gb|EFQ23497.1| flagellar hook-associated protein FlgK [Aminomonas paucivorans DSM
           12260]
          Length = 872

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/472 (11%), Positives = 130/472 (27%), Gaps = 50/472 (10%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46
              F   +   +   +   +   NI NAD + Y R+    + +                 
Sbjct: 5   FFGFEMGRRAMDYFRRGMETAGHNIANADVEGYSRQRVEASSTDPFTDPGLARPAIPGQI 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   +       D       S  G    +Q      E+   ++       + I +
Sbjct: 65  GTGVKIDAIKRLRDLFLDSQYREEISVQGYWEQVQQAVNQTEIY-VNEPAGKGFQYAIDQ 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             ++L+  SK   +    + ++   +  V   +       + R   +KEI+L++     +
Sbjct: 124 YWEALQEVSKRPDDSATRENLVQKTKSTVAFLHQLETNYDQYRTALNKEIKLKVDQANEY 183

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           + ++  +N+ I        + +D LD+RD+L +K+S+II  +    +             
Sbjct: 184 IDQIAGLNEVISEIKGVGGNPNDLLDRRDLLTEKLSKIIDCTV--GSPCIDEADGEFKID 241

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L   +       +         +   F   V  ++    + P+  +  L Q     V   
Sbjct: 242 LHGKLLVQGTKTRHLETVPMVGNQGFFDVQVEDNTFDHVSNPEVAVAVLEQRMTESVVSL 301

Query: 287 QNQLDEMAR--------------------------VLIGSFSEKDPIAGNSENVPGLFIA 320
           Q +                                 +    +            P   + 
Sbjct: 302 QVKRLANEANWEVGKGNGRLAVQDANAALGLRGSFGIQVGTNGVQKTTTAFPGNPPAVLV 361

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             + +        ++    V      +   +R     ++  + + +  A      N    
Sbjct: 362 GTVLEPPIPATTEVTHRFRVAAGGFESLVQVRWNSVTNQWDITDNQGHAAASATANLNLS 421

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
             +    F    G   + ++          L  +  +   +      + + +
Sbjct: 422 DLDS--FFGANYGAALDCSVNGAGNEWT--LGSDNRELLSITDVQGNLASQL 469



 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 66/212 (31%), Gaps = 7/212 (3%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             G +K +L+ RD  +    +  DE+   L+   +        + +       +    + 
Sbjct: 663 QGGALKGMLESRDDFILAQMDSFDEIVFGLVSETNALHFAGHGTGDYLMTSGVEFFDTVA 722

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
            +     S  +    +  S           +       K             ++     +
Sbjct: 723 VRYGAAKSFELNEEIENHSGL-------IAAASDDGKGKAQGTGGTSSGDGSNALRMAQL 775

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
                  +       +  + I  L      +  +      +   I       +GVN+ EE
Sbjct: 776 KQTKVLNDRTADFNAFYESFIAELGATGQRAATMGKNQTALVGQIQTQRQAVMGVNMDEE 835

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  +IK +Q++N + + I   D+ML  ++ G+
Sbjct: 836 MMDIIKFQQAFNGAARYITTIDEMLDKIINGM 867


>gi|126462478|ref|YP_001043592.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104142|gb|ABN76820.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 1363

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/452 (12%), Positives = 127/452 (28%), Gaps = 30/452 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51
           ++ + A++   +     +    NI N + + YVRR+ +                S + V 
Sbjct: 2   SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   R     +  + L     A      L +     E +        S    ++   D+L
Sbjct: 62  VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                   +  L + V+   + +  +F T A  +  +R +         +   + L +L 
Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVAGLAGQTAAEASQTLRQLA 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  +     S  +    LD+RD LL ++S  +G+           V            
Sbjct: 180 ELNGRMTGAQQSAMNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P  +     ++  +      +       ++ Q   +  G ++       +V      +LD
Sbjct: 234 PLLLEGTVASTLGLAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAGAELD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347
            +AR L+   +       +     G  +       +         G +  +  +      
Sbjct: 293 ALARQLVAEMNTVHAQGIDQAGARGGDLFALEGWQVTADTGNRGTGGASVVAFDTATAPG 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  L    +      ++                          + G    V+  +     
Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALPGLTLQMTGAAMDGDRLTVSPRQGRALD 412

Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435
           + +L  +       +  +   +         S
Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444


>gi|269138588|ref|YP_003295288.1| flagellar hook-associated protein [Edwardsiella tarda EIB202]
 gi|267984248|gb|ACY84077.1| flagellar hook-associated protein [Edwardsiella tarda EIB202]
          Length = 546

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/552 (10%), Positives = 126/552 (22%), Gaps = 83/552 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  + A    A    NI N     Y R+      +             V V
Sbjct: 1   MANLINNAMSGLSAAQTALAVTSNNINNVYTAGYNRQTVSFAENNGTSTPAGFIGNGVVV 60

Query: 53  VTQRSENKNMFDKVLHA----------------------HSSAIGQQRLLQSFEALKEMM 90
                E        L                          S       +Q+F    + +
Sbjct: 61  SGINREYNQFIVNQLRQGQSDLATTSTYHKQISQIDNLLADSTNSLAANMQNFFKNLQNL 120

Query: 91  SADDHYNNSPTHYISK----------------LRDSLESYSKNLSEDILGKTVIDNAEEV 134
            +    + +    IS                   +S  + + + + + +       A   
Sbjct: 121 VSYPSDSAARQTVISNANGLTAQFKTTDAYLRNLESSTNVTVSNNAEQINDYAKQIANLN 180

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            +    +         D     +   S L + ++    + D     + +   +       
Sbjct: 181 NRISELTGASGGTAPNDLLDLRDKMASELNQIVNVDISMQDGAMNVSFAGGLSLVQGGDA 240

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD---------------------------GTTL 227
             +    S      T +  +    +                               G   
Sbjct: 241 YSVKAVPSSSDPSRTTLAYDRGNGLSEVPEARISGGSMAGIFRFRNEALDNTRNQLGQIA 300

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV-VPIF 286
                     +         +   +F  G   S    +   K  + A       V    +
Sbjct: 301 LSMANAFNQVQSEGVDLNGDKGGDLFGFGQPESLANTNNTSKTSLSASYDDISKVQATDY 360

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +    +    +               +     +      +        +++  +     +
Sbjct: 361 RIDFKDGKWNVTRLADGTHQTITPEADGGDTVLKFDGLKVKINDTPAENDSFKLRTTSTA 420

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
              F       +K    + K   G         D  N+         +    TL      
Sbjct: 421 ISGFDVKISDPAKIAAGSAKGEVGDNTNAQKMLDLQNQKI-------VGGKATLSGAYAG 473

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +G +    + +         V   +++   +  GVNL EE   L++ +Q Y  + ++I 
Sbjct: 474 LVGTIGNQTNGAKVDSTAQGNVVKQLTKEQQSVSGVNLDEEYGDLVRFQQYYMANAQVIQ 533

Query: 467 FTDKMLQTLLEG 478
               M   LL+ 
Sbjct: 534 TATSMFNALLDI 545


>gi|163758031|ref|ZP_02165119.1| flagellar hook protein E [Hoeflea phototrophica DFL-43]
 gi|162284320|gb|EDQ34603.1| flagellar hook protein E [Hoeflea phototrophica DFL-43]
          Length = 419

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/481 (10%), Positives = 112/481 (23%), Gaps = 63/481 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + +  ++  N+ NA+   Y R     +      +  +  S   
Sbjct: 1   MSLYGMMRTGASGMNAQANRLGTVADNMANANTTGYKRASAEFSSLILPGSAGSYNSGAV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   + + A+                      N  P            E +  N +
Sbjct: 61  TTDVRYSISQAGALEFTSSKTDMALDGSGFFIVTDDNGLPFLTRAGSFVPDGEGFLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     ++                 + A +           +  L E   +  A   
Sbjct: 121 GFRLMGYNYESGTPTPVVNGFDGLVPVNVSAGSLTAAPSTTGYFQANLDEGATIVPAADL 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            + +   A                                 +       + +  ++  + 
Sbjct: 181 PSTNSATA------------------------------DYTSKSSLIAIDNLGGEVLLDF 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T T+       D    S+          +       D +                 
Sbjct: 211 YYTKTATNTWEVTVYDRAGASAGTSFPYASAPLATTTLQFDPLNGQLAG----------- 259

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                   +    +      A    DL N      + T+       S PS + D      
Sbjct: 260 -------ASATDISFTVPGGAGLTIDLSNMSQLNYAFTVDDANVNGSKPSTVTDIEISED 312

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             ++          L               P+AG   +  L               S   
Sbjct: 313 GTIFASYENGTLEPLYRVALADVTSPDKLRPLAGNVYSQGLD--------------SGVI 358

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    F  +      +  V++ EEL+ +I  ++SY  ++K+      +++ L+   
Sbjct: 359 TTGFAGSGSFGKVVSGALESSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMEVLVNLK 418

Query: 480 K 480
           +
Sbjct: 419 R 419


>gi|256750749|ref|ZP_05491634.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750332|gb|EEU63351.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 417

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 114/478 (23%), Gaps = 61/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + +            +S   +     SK  +   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                     +         + +  +  D         + +   L   + ++ A   +  
Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPAATTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +                    I+     N  +        +   +    I F K ++
Sbjct: 173 IGGN--------------------INASTEINGAISYNILVYDSQGGSHIATITFTKNDA 212

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T     +         SS+   +   G           ++P                  
Sbjct: 213 TTWNWSVS---------SSDPAISSVDGSGTLTFGADGRILPDA---------------- 247

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                        G    +    + +     +S  +     + S           ++   
Sbjct: 248 ------NGVRIANGTLNFNMNTAVTSATIGPVSLDLSRLTMFSSETDLRELSKDGNEAGS 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 302 LESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 359

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 360 AAGTNTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVNMKR 417


>gi|261856354|ref|YP_003263637.1| flagellar hook-associated protein FlgK [Halothiobacillus
           neapolitanus c2]
 gi|261836823|gb|ACX96590.1| flagellar hook-associated protein FlgK [Halothiobacillus
           neapolitanus c2]
          Length = 549

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/443 (11%), Positives = 129/443 (29%), Gaps = 24/443 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + + +        Q  A+   NI NA+   Y R                     V V
Sbjct: 1   MPDLMSNSVTGLLAMQQALATTGNNIANANTPGYSRERVNLASMQAQYQNGSYIGSGVQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +            L+A ++          F      +  D               ++ +
Sbjct: 61  ASVTRVYDQFITSQLNAATTTNSSLTFQNDFTTQVTQLLGDTSS--GIAQQTQAFFNATQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N ++     T + +A+ +  +FN    ++Q +     ++       +  +  ++  
Sbjct: 119 AIAANPTDATARSTFLGSAQALTDSFNRIDSQLQSLDNQIGQQATDIGRQINTYAKQVAS 178

Query: 173 VNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +N  I    A+  +   +D LDQRD L+ +IS +I +     N  ++ +  + G +L   
Sbjct: 179 LNGEISKAQATNPNALPNDLLDQRDQLITQISSLIDVKANPDNQGNINLTLASGESLVLN 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                         +              +++  S V  G +  +L+ +  ++   +NQL
Sbjct: 239 STATNLSVGNLPSGLNITLG---------NTDITSRVKGGTLGGMLEAQSQLITPLRNQL 289

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR-SNPS 349
              A VL    ++      +     G  +   +     +     +     +     S+P+
Sbjct: 290 GRAALVLADQVNQNQTTGVDLNGNTGTNLFTDVSAFAPQTTAQPTNKGTGSATGAYSDPT 349

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            L     +++    N +      +       +         +              N + 
Sbjct: 350 LLTGQTYLARYDGTNWQVSTVPGNGAAPLTVASGGTLSLPGLDVTFAGAPQSGDVLNILP 409

Query: 410 WLEKNRSDSHDLHMKSQVVFNHI 432
            +             S +     
Sbjct: 410 TVGAAGKIGVVQQSPSGIAAAEA 432


>gi|11136619|gb|AAG31286.1|AF317649_1 flagellar hook-associated protein 1 [Rhodobacter sphaeroides]
          Length = 1363

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 126/452 (27%), Gaps = 30/452 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51
           ++ + A++   +     +    NI N + + YVRR+ +                S + V 
Sbjct: 2   SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   R     +  + L     A      L +     E +        S    ++   D+L
Sbjct: 62  VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                   +  L + V+   + +  +F T A  +  +R +             + L +L 
Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVTGLAGQTAVEASQTLRQLA 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  +     S  +    LD+RD LL ++S  +G+           V            
Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P  +     ++  V      +       ++ Q   +  G ++       +V      +LD
Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347
            +AR L+   +       +     G  +       +         G +  +  +      
Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVAADAGNRGTGGASVVAFDTATAPG 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  L    +      ++                          + G    V+  +     
Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALTGLTLQMTGAAMDGDRLTVSPRQGRALD 412

Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435
           + +L  +       +  +   +         S
Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444


>gi|117926844|ref|YP_867461.1| hypothetical protein Mmc1_3570 [Magnetococcus sp. MC-1]
 gi|117610600|gb|ABK46055.1| protein of unknown function DUF1078 domain protein [Magnetococcus
           sp. MC-1]
          Length = 496

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/503 (10%), Positives = 134/503 (26%), Gaps = 30/503 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------------ISP 47
           MS+        +   N       I  N+ N +   +    T                 S 
Sbjct: 1   MSIHQAMYAGSSALTNYGNAMTVIGNNLSNTNTTAFKGSRTTFEDVLIQTVGISGTRAST 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD----------DHYN 97
           +  T V   + ++ M        S+        Q F  +++                   
Sbjct: 61  QIGTGVGVSAIDQLMQQGGFAGTSTVTDLAIDGQGFFKVRDANPGSAQLGGGGGNATSSM 120

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           ++        + +L+ Y    +  IL    +D          +           A+ +  
Sbjct: 121 DTFYTRAGDFKQNLDGYMVTNAGLILQGYAVDQTSGETSG--SMTDINLATYQSAEPKAT 178

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             IS      S+  ++ DA          A         +   + +   +    +   D 
Sbjct: 179 TAISVGMMLQSDAAIITDANHSTYDPNDPASYNYATPIRVYDSLGQGHNVELHFKKTTDN 238

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                      +          + +    + +      G   ++   +    G++     
Sbjct: 239 TWNWYVAVPSEDLSAAQAGTGDLTNMMAVTGAMESAPTGAGYTAGVLTFDTYGRLDTEGS 298

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
              +      +   E  ++L   F   D I  ++ N   +     +        +  +  
Sbjct: 299 TPITFQFTGNSSTAETQQIL---FDFGDAITADATNDFSIADGAVLYGSGTNTAEVANTG 355

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +  + Q  S+ + +    +          ++     +   Y +   K      +   +  
Sbjct: 356 LLGSVQRASSFTTMSASQNGFSAGFLESLSVGLDGTINGTYTNGETKALYQIGLVDFDNE 415

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L +   N     E + S        +      I         V++  E+  +I  +++
Sbjct: 416 QALDQVGANLFA--ETHLSGVPREGEPNSGALGTIRSYTLENSNVDMSNEMVNMITTQRA 473

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  +++LI  TD ML+ L+   +
Sbjct: 474 FQANSRLITVTDGMLEELIALKR 496


>gi|332558502|ref|ZP_08412824.1| FlgK (HAP1) [Rhodobacter sphaeroides WS8N]
 gi|332276214|gb|EGJ21529.1| FlgK (HAP1) [Rhodobacter sphaeroides WS8N]
          Length = 1363

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 126/452 (27%), Gaps = 30/452 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51
           ++ + A++   +     +    NI N + + YVRR+ +                S + V 
Sbjct: 2   SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   R     +  + L     A      L +     E +        S    ++   D+L
Sbjct: 62  VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                   +  L + V+   + +  +F T A  +  +R +             + L +L 
Sbjct: 120 NGLGATPRDGALRQVVLAAGQTLASSFTTVASGLAGLRDEVTGLAGQTAVEASQTLRQLA 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  +     S  +    LD+RD LL ++S  +G+           V            
Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P  +     ++  V      +       ++ Q   +  G ++       +V      +LD
Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347
            +AR L+   +       +     G  +       +         G +  +  +      
Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVAADAGNRGTGGASVVAFDTATAPG 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  L    +      ++                          + G    V+  +     
Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALTGLTLQMTGAAMDGDRLTVSPRQGRALD 412

Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435
           + +L  +       +  +   +         S
Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444


>gi|332531618|ref|ZP_08407515.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624]
 gi|332038981|gb|EGI75410.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624]
          Length = 512

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/513 (8%), Positives = 119/513 (23%), Gaps = 43/513 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55
            F +  +  N +S+    I  NI NA+   +                          V  
Sbjct: 2   GFQQGLSGLNASSRSLDVIGNNIANANTTGFKSGRAEFGDVFASSIGASGAGTIGIGVEV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA------------------------------ 85
            + ++      +   ++ +        F A                              
Sbjct: 62  STVSQQFTQGNIAITNNDLDVAINGSGFFALQLQDGSRAYSRAGEFKLDPLGYVVTNTGA 121

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
                  D   N +          + +  + N +  I       ++   V N +T +  +
Sbjct: 122 QVMGFPTDPAGNRTSVTLQPMRMPTSQGIAANQTTAITASKFTLDSAATVWNQSTPSTSL 181

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
            +                          N    +  +   DA     Q  +L       +
Sbjct: 182 ARFGTAITNYDSQGNEVPVELYFRKVAPNVWQVYTDSDNGDAGANQSQLGLLEFNTDGSL 241

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
             S    +     +  +           +   +   + +     N +        +   +
Sbjct: 242 RASYTT-STASGALPATGPQADITVNNWNKLNDGTGNTSTAITINAVTYPAGTAIATLPT 300

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                 +             +   +  +        +       +      L  +  +  
Sbjct: 301 TFAALDLTNANNNTALAFADYSVDVGTIDPDGAVGGTTTSSTNASMIINVTLPPSPNVTT 360

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
           +       IS  +    Q+ +  +                  +     +   + +   + 
Sbjct: 361 IGLNGTGNISIDLSGIVQHNTRFTAGDLSQDGYPPGDMVGLKIEDNGIITARFSNGETQA 420

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
           F    +A       L         W+E   S        ++     +         V+L 
Sbjct: 421 FGQLALANFRNVQGLSPTGNG--EWIETQASGQPIFGGPTEGNLGELRSGALEESSVDLT 478

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +EL  ++  +++Y  + + I   D+++QTL+  
Sbjct: 479 KELVNMMTAQRTYQANAQTIKTQDQVMQTLVNM 511


>gi|224436692|ref|ZP_03657696.1| flagellar hook-associated protein FlgK [Helicobacter cinaedi CCUG
           18818]
 gi|313143190|ref|ZP_07805383.1| flagellar hook-protein FlgK [Helicobacter cinaedi CCUG 18818]
 gi|313128221|gb|EFR45838.1| flagellar hook-protein FlgK [Helicobacter cinaedi CCUG 18818]
          Length = 606

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 115/371 (30%), Gaps = 34/371 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTI--SPENVT 51
            +L+  N +                NI NA ++ Y R+  +                 V+
Sbjct: 3   GILSSLNTSYTGLQAHQLMVDVTGNNISNASDEFYSRQRVLVRPEKPLYFQDYNLGRGVS 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V T +  +           +          +           +       + + +  +S 
Sbjct: 63  VETIQRIHDEFVFNRYRKAAEEAQYYDTHFTTLREASAFF-PEVDGVGIYNDLEEYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  +KN ++    + +  N++ +  N   +   + +++  A +E+E+ I+ + R   E+ 
Sbjct: 122 KDLAKNSTDPAQKQVLAKNSQVLSTNIKDTRARLVRLQQKASEELEVTINEVNRIAKEIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217
            +N  +K     +    A++  D+RD L   +  ++G +    +            + D 
Sbjct: 182 HINGKLKEMEDQRELKQANELRDRRDELEYNLQTLVGANVFKNHLDSNASIHPKLADFDD 241

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALL 276
               + G           +   +         N ++  G    +      + +GK  +L+
Sbjct: 242 EYVLNIGFGFNIVDGAMYHPIVLKKDDNHLNLNRVYFQGDDFKTVEITDKIVQGKAGSLI 301

Query: 277 QIRD--------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + N LD  A+  I + +     +  ++          +  L +
Sbjct: 302 SLYNSGADGTRVGKIQDYINHLDIFAKGFIEATNSIYSQSAATQIRSDKLDVWSLNALVD 361

Query: 329 KLCQGISETIC 339
                   +  
Sbjct: 362 SNYNIKEGSFD 372



 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 89/283 (31%), Gaps = 12/283 (4%)

Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN--PIFIDGV 257
             S     +     ++ + V++ +         ++ +F+ +   T   E     I ID +
Sbjct: 334 TNSIYSQSAATQIRSDKLDVWSLNALVDSNYNIKEGSFDVVVYSTQGEEIARKTITIDRI 393

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
               +   A+ +           + V  +     +         S+              
Sbjct: 394 TTMHDVVKAINENTDDNNDNNALNDVDDYFRAYYDNGTKEFNILSKNPSQGLYVAIQDNG 453

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
               G   L+       +  I +N +Y  + + +R            +  + G  D+ N 
Sbjct: 454 SNFTGAFGLNKFFNGEYAHDIALNQEYAKDATLIRPW----------LTPVNGNFDVANM 503

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                  +  F         + + EY +   G +      +         V + + + + 
Sbjct: 504 MQQLQYDDVDFYVNKYEKKQMRIPEYFQFLAGRVANQTEAAQRTKETKDSVLSAVKKEHL 563

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               V+L EE+  LIK +  Y  + K+I   D+M++TLL   +
Sbjct: 564 AISQVSLDEEMVNLIKFQGGYAANAKVITTIDRMIETLLGIKQ 606


>gi|20807880|ref|NP_623051.1| flagellar basal body and hook proteins [Thermoanaerobacter
           tengcongensis MB4]
 gi|254478868|ref|ZP_05092232.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM
           12653]
 gi|20516445|gb|AAM24655.1| Flagellar basal body and hook proteins [Thermoanaerobacter
           tengcongensis MB4]
 gi|214035181|gb|EEB75891.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM
           12653]
          Length = 415

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/478 (9%), Positives = 105/478 (21%), Gaps = 63/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAISGLQAHQARLDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + +            +S   +     S   S   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGESILY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                               + +  +  D         + +   L     +  +   +  
Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWFGMEPSTTTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +                    ++        +        T   +    I F + + 
Sbjct: 173 IGGN--------------------LNASTGIGQSISYNIIVYDTQGGSHVATITFTRQDP 212

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T     +              S    G           + P  Q               
Sbjct: 213 NTWNWSVSS-------QDPYISSVSVAGSTAITFGADGKIAPNTQA-------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                        G    +    + N     ++  +     + +         + ++   
Sbjct: 252 ------------TGTLTFNMNTAVTNAQIGPVNIDLSKLTMFSTETDLRELSKNGNEAGS 299

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 300 LQSINIDKYGVVSGIYSNGRRQVIGQIALADFQNPMGLEKVGNTM--FINTVNSGEPMIG 357

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        VNL  E   +I  ++ +  + K+I  +D+MLQ L+   +
Sbjct: 358 AAGSGTRGSINPGTLEMSNVNLANEFVDMITTQRGFQANAKVITVSDEMLQDLVNMKR 415


>gi|326796591|ref|YP_004314411.1| flagellar hook-associated protein FlgK [Marinomonas mediterranea
           MMB-1]
 gi|326547355|gb|ADZ92575.1| flagellar hook-associated protein FlgK [Marinomonas mediterranea
           MMB-1]
          Length = 659

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 149/440 (33%), Gaps = 8/440 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNM 62
            ++ N   +    +S + +++ +N+ N D + Y R++T T+      V +          
Sbjct: 3   TSLLNIGLSGLQTSSARISTVGQNVSNVDTEGYNRQETATSSVLGGGVKINDTSRLVDQF 62

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ + + +S +   +   S     + +  +D  + S   Y+SK    L++ + + S   
Sbjct: 63  RNQQVWSDNSKLNYYKTYSSMMDNMDNVVGED--SVSLNTYLSKSFTDLQTANSDPSSSS 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
              T   + E +VQ +N  A  V + +  ADK+I   + ++    S+++ +N  I  +  
Sbjct: 121 ARNTAYSSFESLVQRYNEMASIVDEQKTTADKQINAVVESVNEITSQISNLNTEILKQET 180

Query: 183 -SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +   A++  DQ++ L+ ++S  + I     +N  M V  +  T L      +    +  
Sbjct: 181 QTGTSANELRDQQEQLVTELSSYLDIDVAYDDNELMTVKLAGSTPLVLQGSANEISLERE 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + +  + +D         +    G + AL+  RD      +  L   A VL  S 
Sbjct: 241 SSGSDNLT--LKVDFGSHDVGASTDDIGGSLGALIDYRDEFSDEAERTLGLQALVLADSL 298

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           + ++ +  +++   G  +                 +  +  +     S      S   + 
Sbjct: 299 NTQNKLGLDADGNYGNNLLSTGDIEVTPNDDNGFSSGDIKVRVTEGASNELTTNSYEVEM 358

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
           + N + +    +      +  N           +    +  +            S     
Sbjct: 359 ISNTQFVVKTYNANGKVVEQSNPVDTSTATPNSDGYFEVDGFGIEVQFDTGGTYSTEDKF 418

Query: 422 HMKSQVVFNHISESYSNTVG 441
                           +   
Sbjct: 419 SFVPTE--GAAKNLELSASN 436



 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 101/372 (27%), Gaps = 3/372 (0%)

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L++     S +   K  +D       N  ++         D           +    S 
Sbjct: 288 GLQALVLADSLNTQNKLGLDADGNYGNNLLSTGDIEVTPNDDNGFSSGDIKVRVTEGASN 347

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               N       ++        +    ++++ + +   +    ++    V        F+
Sbjct: 348 ELTTNSYEVEMISNTQFVVKTYNANGKVVEQSNPVDTSTATPNSDGYFEVDGFGIEVQFD 407

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           T       +K +       +  + +          ++       +       +       
Sbjct: 408 TGGTYSTEDKFSFVPTEGAAKNLELSASNGDDFALASPISVSKSSSNLSDVEISVSTITN 467

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN--PQYRSN 347
           LD                  +    P     +      N L      T   N   Q    
Sbjct: 468 LDPATSGFSVGGGLDSTAPQSIVFTPDNTTYEVRDGAGNTLATVAGVTDYTNLLEQAGLA 527

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +   D    S     +  N+    D  N   +      I +  + +N + TL E   + 
Sbjct: 528 AAAGYDISVSSAPKAGDEYNIEFNTDSENDNYNGLLLAEIQNA-SLVNGSETLTEAYSSF 586

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    S        ++ V+N    S     GV+L EE   L+K +QSY+ S ++I  
Sbjct: 587 VTSVGSLTSTLSSNETAAETVYNQSVNSKDQISGVSLDEEAVNLLKYQQSYSASAQVISA 646

Query: 468 TDKMLQTLLEGV 479
                 TLL  V
Sbjct: 647 ARTTFDTLLGVV 658


>gi|212634354|ref|YP_002310879.1| flagellar basal body rod protein [Shewanella piezotolerans WP3]
 gi|212555838|gb|ACJ28292.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3]
          Length = 640

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 124/405 (30%), Gaps = 24/405 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS+  + + A+     +  Q A    NI NA+   Y R+    +                
Sbjct: 1   MSM-DLLSIARTGVLASQSQLAITSNNIANANTDGYNRQVASQSALDSQRMGNEFYGAGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +    +   + L   ++A  + +   S  +  + + +     ++    ++     
Sbjct: 60  YVSDVKRVYNDYAARELRIGATAASEAQTSYSKMSELDQLFSQ--IGSAVPASLNDFFAG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           + S S    +  L  +++ NA ++  N N   + +       + +I      +    +EL
Sbjct: 118 INSLSDIPDDLGLRDSLLTNANQLANNVNQMQKHLDGQMNQTNDQISAVTDRINEISNEL 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +             LD++D L+ ++SE   ++ +   +    V       L   
Sbjct: 178 GNINRELMKSQ---GQDMQLLDKQDALILELSEYAEVNVVPLESGSKSVMLGGSIMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   K            I       S     +   G++ AL+  RD  +   Q +L
Sbjct: 235 EVSMQVGTKPGDPHANELQ--ITASSGNKSLVVDGSKIGGQLGALVNYRDDTLIPAQLEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            + A  +  +F++      +     G  I   I D   +L +  + +             
Sbjct: 293 GQFALGVADAFNQAQSQGFDLNGQVGSNIFTDINDPSMQLGRAGALSTNTGNA------N 346

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
           L            N   L+          D+ + N     + G  
Sbjct: 347 LAVNIDDVAALTGNSYELSFTAPSTYELKDAQSGNVTPLTLNGTT 391



 Score = 90.1 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/364 (10%), Positives = 94/364 (25%), Gaps = 5/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +       +   A  V   FN +  +   +       I  +I++    L     ++  
Sbjct: 282 DDTLIPAQLELGQFALGVADAFNQAQSQGFDLNGQVGSNIFTDINDPSMQLGRAGALSTN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 + +         +      +           + ++   T +GTTL       I+
Sbjct: 342 TGNANLAVNIDDVAALTGNSYELSFTAPSTYELKDAQSGNVTPLTLNGTTLEGANGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  +               ++     +  GK  A      +               
Sbjct: 402 IASGAMASGDKFEIRPT---SSAATALSVTMTDGKGIAAAAPTITADAANSGNTSINLVS 458

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +    +   P  G+         A                          + +       
Sbjct: 459 IDNRNAAGFPTTGSELTFEIDPSAVPPTFEAFDAQGNSLGPAAPYTPPSISANGFTFEVD 518

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +            + +  N   +  N   + +       + TL +   N+   +     
Sbjct: 519 STATTKERFTFDLSFAEGDN--SNLVNMAKLNESKIMNGGSTTLTDVFENTKLDIGGKTK 576

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      +  ++N       +  GVNL EE + L++ +QSY  S +++    ++  TL 
Sbjct: 577 SAEIAVGSAGAIYNQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTATEIFNTLF 636

Query: 477 EGVK 480
             ++
Sbjct: 637 SSLR 640


>gi|262276417|ref|ZP_06054226.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886]
 gi|262220225|gb|EEY71541.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886]
          Length = 435

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/486 (9%), Positives = 113/486 (23%), Gaps = 66/486 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
             N A +    A +   +   NI NA+   +                    T +   V  
Sbjct: 2   ALNIALSGLAAAQKDMNTTSNNIANANTFGFKESRAEFGDVYSASIFSNAKTTTGSGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +      ++ +  +     + ++     A      +            +
Sbjct: 62  SIVAQ---QFHEGSSIYTNNPLDLRISGNGYFSVANDKLATQD---NVLTRNGAFHLDKD 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    +D+               + ++  + +   L + +          
Sbjct: 116 NNIVNSEGQFLLGYNVDS---------------ETLQVGSFEPRALNVPDQFGQPRASEN 160

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           V   +              +  D      S    I   +     +  Y            
Sbjct: 161 VEIGLNLPAGGSEKDPALFNPEDPDTYNKSTSATIFDSLGQPYKLTTYYVKDNVTPNKWA 220

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         S ++  F        +       G + A+                 
Sbjct: 221 VYYTATDATGEKPLSLTSGEFTSASGQVGHSVQFNSDGSVNAV----------------- 263

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                              + V       G++       Q ++       QY S     R
Sbjct: 264 -------------NGGAPIQTVEFGPGGAGLEMNGADGTQSLTINFEEPTQYASPFEMRR 310

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +        ++     ++  Y +  N       +  ++    L +       W  
Sbjct: 311 FTEDGATTGYLAKVDIDPKGTIMATYSNGENVALGRVAMVRVSNQQGLSQAGN--TQWKV 368

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             +S         Q  F  +         +++ +EL  LI  ++++  +++ +   ++M 
Sbjct: 369 TQQSGEAIWGEAMQGAFGKVKSGTIEQSNIDMTQELVDLITAQRNFQANSRSLEVGNQMQ 428

Query: 473 QTLLEG 478
           QT+L+ 
Sbjct: 429 QTILQI 434


>gi|167037660|ref|YP_001665238.1| hypothetical protein Teth39_1248 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116075|ref|YP_004186234.1| flagellar hook-basal body protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856494|gb|ABY94902.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929166|gb|ADV79851.1| flagellar hook-basal body protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 417

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 114/478 (23%), Gaps = 61/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + +            +S   +     SK  +   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                     +         + +  +  D         + +   L   + ++ A   +  
Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISLKNWSSIDPAATTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +                    I+     N  +        +   +    I F K ++
Sbjct: 173 IGGN--------------------INASTEINGAISYNILVYDSQGGSHIATITFTKNDA 212

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T     +         SS+   +   G           ++P                  
Sbjct: 213 TTWNWSVS---------SSDPAISSVDGSGTLTFGADGRILPDA---------------- 247

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                        G    +    + +     +S  +     + S           ++   
Sbjct: 248 ------NGVRIANGTLNFNMNTAVTSATIGPVSLDLSRLTMFSSETDLRELSKDGNEAGS 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 302 LESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 359

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 360 AAGTDTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVNMKR 417


>gi|124516303|gb|EAY57811.1| probable flagellar hook protein FlgE [Leptospirillum rubarum]
          Length = 457

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/493 (11%), Positives = 120/493 (24%), Gaps = 57/493 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           M +L+    A +  N      + I  NI N +   + +   +                  
Sbjct: 1   MGVLSSMYVATSGLNAMGTDMSVIGNNITNLNTVGFKQGRAVFANVYGQTMTGRSNTVNT 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V   +          + A ++A+        F  +                 
Sbjct: 61  SQPGSGVYVDAIQQ---EFTQGSVQASTNALDLAIQGNGFLTV------RSKDGQKFYTR 111

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             +L         + S   L            Q +      +Q + +D            
Sbjct: 112 NGELALDKTGRIVDTSNRAL------------QGYMNKNGRIQPVLSDILVPQTTVPPKA 159

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + +     ++  +  K     +     +  D L  +                    T D
Sbjct: 160 TQNVFSRINLDAGMTEKLKEGREFEKSSNIFDSLGIQHLLTYKFIPTSVAGQWAFQATMD 219

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G +L       I++  +   T  +    + +     + N  S    G           V 
Sbjct: 220 GASL-TKGGGSISYPPLGRKTPKTLKGMVGLIQFDGNGNVKSVNYGGSPL-KRDANGVVH 277

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
            ++Q  L + A   +                    +   +  L        +     +  
Sbjct: 278 ALYQTTLADKAATPVSFDVVIPTKGQTIRPNRINGVTQQVLQLTQYNAPSSTVEETQDGH 337

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
              + + L                +     ++  + +   K      +A  N    L   
Sbjct: 338 KSGDLNNLA---------------IGRDGKIVGSFSNGVQKVLGVVAIASFNNPGGLASV 382

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   ++E   S   +     Q     +  +       +L  ++  +I  E+ Y  S  
Sbjct: 383 GGN--AYIESIASGVPNFGRPGQGGRGALLSNSLELSTTDLGRQMVDMITAERGYQASAS 440

Query: 464 LIMFTDKMLQTLL 476
           +I   + +L TLL
Sbjct: 441 IIATDNTILNTLL 453


>gi|332533175|ref|ZP_08409044.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037457|gb|EGI73911.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 455

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/484 (11%), Positives = 119/484 (24%), Gaps = 42/484 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55
            FN A      A +       NI N +   +                      N   V  
Sbjct: 2   SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++      + + A+ + +S+ D             + + +++ 
Sbjct: 62  TMVAQQFHQGSLQFTNNSLDLAITGEGYFAMTDDLSSQDLT----YTRAGAFKLNQDNFM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D++     + + S  +  +I   +      E   L   L        
Sbjct: 118 VDAKGNFLQAFPVDSSTGDTTSVSLSTTDPIQIPDSSGSPRATENVFLSFNLDATADAPG 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                T+S                             ++    VY S G           
Sbjct: 178 IAFDPTSSG-------------------------TYNSSTSTTVYDSLGEPHILQYFFAK 212

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-KIKALLQIRDSVVPIFQNQLDEMA 294
             +     T  S      +DG VV +  G            L    S +P          
Sbjct: 213 EDDAAAGGTDNSWEVYATLDGKVVDATTGGEQTAPYTPLTTLGFNSSGLPSTTGGAANTN 272

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                              +           ++       +    +  QY S        
Sbjct: 273 TTTFDEILLPAGSGTGLSTLLDNGATFPGTGIELNWRDENNTAGRIPTQYSSGFEVKALD 332

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              S        ++     ++  Y +  +       +     +  L +       W +  
Sbjct: 333 QDGSTVGRLAGIDIGTDGKIVASYSNGDSTFLGQVAMVRFPNSQGLSQVGD--TSWKQSI 390

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S            F  I+ S       NL  EL  LI  +++Y  +++ +     + Q+
Sbjct: 391 DSGEPVAGEAGSGTFGGINSSALEQSNTNLTNELVDLITAQRNYQANSRALEVNSTIQQS 450

Query: 475 LLEG 478
           +L+ 
Sbjct: 451 ILQI 454


>gi|315127353|ref|YP_004069356.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913]
 gi|315015867|gb|ADT69205.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913]
          Length = 440

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 114/483 (23%), Gaps = 55/483 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQ 55
            FN A      A +       NI N +   +                      N   V  
Sbjct: 2   SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSAGKTKNGDGVQT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++++      + + A  + + A D             + + +++ 
Sbjct: 62  TMVAQQFHQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFT----YTRAGAFKLNKDNFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D       + + S     +I   +              +     V  
Sbjct: 118 VDAKGNFLQSFPVDEVSGDTTSVSLSTSSALQIPDSSGSPRSTSNVYTSFNVDSREDVIA 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                T S              L +   +         N   V  T D T    T     
Sbjct: 178 VPFDATDSTTYNSSTSTTMYDSLGEPHVLQFFFVKTAPNEWQVHGTLDKTPFDATGAATA 237

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
               ++++   +   P   +G     N G       +               + +    R
Sbjct: 238 TPSPLSTFGFDASGLPATTNGAP---NVGPTFTDVNLTGTNLSGILSNGAQFDDIAINWR 294

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G+ +                                        QY S         
Sbjct: 295 DEAGTAN------------------------------------RTPTQYASRFEVKALEQ 318

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        ++     ++  Y +  +       +   + +  L +       W +   
Sbjct: 319 DGATVGRLAGIDIGTDGKVVASYSNGDSTYLGQVAMVRFSNSQGLQQVGD--TSWKKSLT 376

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S              +I+ S      VNL  EL  LI  ++++  +++ +     + Q +
Sbjct: 377 SGEPIAGEPGSGTLGNINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTIQQNI 436

Query: 476 LEG 478
           L+ 
Sbjct: 437 LQI 439


>gi|225620340|ref|YP_002721597.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1]
 gi|225215159|gb|ACN83893.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1]
          Length = 423

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/473 (9%), Positives = 104/473 (21%), Gaps = 63/473 (13%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN-------------MFDKVL 67
              +  NI N +   + R                 + +                +     
Sbjct: 1   MDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRGGINPQQVGLGMMVATIDT 60

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
                A+    +        E    +   NNS            + Y  N S     +  
Sbjct: 61  IHTQGALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSLDKDGYLVNPSNGYKVQGW 120

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
                              ++  +    +E  I  +          N             
Sbjct: 121 NAVLNPETG----------EMELNTSAGVEDVIIPVGSKDPARATANTKYFCNLQK---- 166

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
                                      +   +   D T +   +        +N + +  
Sbjct: 167 -----------------------TGETHQSDLTIYDSTGIPRQLRATFTRTDVNRWDMVI 203

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           +        V VS+             L+      +    +  +     ++         
Sbjct: 204 DIPDATEGSVSVSAGDPVEGGGNNTFQLVFNDAGSLISVSDGTNTQTEGVLMPNVSFTYQ 263

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
               E            +    L  G         Q+ S  +            +    +
Sbjct: 264 GTEGE-----------VNQTINLTLGEVGLFNGITQFESPSTTKAIEQDGYTMGMLEGFS 312

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                 +   + +   K      +A  N    L +       +++ N S + ++   +  
Sbjct: 313 FDDSGQITGVFTNGNRKTLGQVALAKFNNAGGLEKAGDTL--FVQSNNSGAANIGTAAAE 370

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               I         V+L E+ + +I  ++ +  + + I   D+MLQ ++   +
Sbjct: 371 GRGSIKAGTLEMSNVDLSEQFTDMIVTQRGFQSNARTITTADQMLQEVIALKR 423


>gi|218681812|ref|ZP_03529559.1| flagellar hook-associated protein FlgK [Rhizobium etli CIAT 894]
          Length = 286

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 100/286 (34%), Positives = 156/286 (54%), Gaps = 1/286 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ I NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1   MSLTSALNTAQGIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVKIDRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +     SS    Q+ L S     + +   + Y  SP+ Y+   +  L+++      
Sbjct: 61  DALLRQYLKSSSQDSAQQALLSGLDDLKSIMGGNDYETSPSTYLGVFQQKLQAFRTAPGS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            +  +  I  A++V  + N +++ VQ +RA ADK+I  ++  L   LS+    N+A+K  
Sbjct: 121 TVAAQGAITAAQDVANSLNNASQSVQDVRAGADKQIATDVDKLNTLLSDFEKANNAVKTA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TAS  DA   LD+R+  L++IS+I+G++T  R+NNDMV+ T+DGT LFETVPR + F+  
Sbjct: 181 TASGADASGALDEREKALKQISQIVGVNTTTRDNNDMVLSTTDGTILFETVPRKVTFKSQ 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPI 285
           + YT T   N +++DGV +    G+     G +++LLQ+RD + P 
Sbjct: 241 DVYTATILGNSVYVDGVALPRGSGATTTGQGSLQSLLQVRDEIAPN 286


>gi|260429561|ref|ZP_05783538.1| flagellar hook protein FlgE [Citreicella sp. SE45]
 gi|260420184|gb|EEX13437.1| flagellar hook protein FlgE [Citreicella sp. SE45]
          Length = 431

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/491 (11%), Positives = 119/491 (24%), Gaps = 71/491 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENV 50
           M++ +  N   +  +  + + A+I  NI N+    Y R +T  T                
Sbjct: 1   MTISSSLNAGVSGLSGNASRLAAISDNIANSSTYGYRRVETDFTALVMSSGTRTYTAGGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE-MMSADDHYNNSPTHYISKLRD 109
           +V   R  ++      L + S+A            +                      R 
Sbjct: 61  SVDNLRVVDQG---GALVSTSNATDLAIDGIGMLPVVAVSQYEATGEPELLLTSTGSFRI 117

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  + S   L     +    +      +   ++ I+       +   S        
Sbjct: 118 DENGYLASESGYYLMGWPANLDGTIPNYPRDTINGLEPIQFSLSLTGDPTTSVDMAL--- 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              +        AS    +  ++  D +    S  I  +                     
Sbjct: 175 --NLPATATQAGASGETEYLEIEYFDNVGISQSVSITFTPT---------------VPAT 217

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +  +      +S    +      I               G    +L + D    ++   
Sbjct: 218 GMSNEWTMVMTDSAQAGAVIGEYTI---------TFDNTTGSGGTILSVADITGGVYDGA 268

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  + G   E    A                   +K    +   + V        S
Sbjct: 269 TGLFTVNVSGGPIEFHIGAVGETGGLSQLGDGFAPISISKDGSSVGNMVSVEVDENGYVS 328

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            L D G     +   + +L  Y  +I     +F                           
Sbjct: 329 ALYDSGQSQVLYQIPLADLPNYNGMIAVDGSTFRP------------------------- 363

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S S  L          +          ++  EL+ +I+ +++Y+ + K+I   D
Sbjct: 364 ---SPESGSFFLWDAGDGPTGSVKSYARQESATDIARELTDMIRTQRAYSSNAKVIQTVD 420

Query: 470 KMLQTLLEGVK 480
           +MLQ      +
Sbjct: 421 EMLQETTNIKR 431


>gi|257095359|ref|YP_003169000.1| hypothetical protein CAP2UW1_3821 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047883|gb|ACV37071.1| protein of unknown function DUF1078 domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 417

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/483 (12%), Positives = 109/483 (22%), Gaps = 78/483 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55
            F +  +  + A+     I  N+ NA    +   +                 +    V  
Sbjct: 2   SFQQGLSGLSAAATALNVIGNNVANASTVGFKGANAHFADVFASSLGIVGASQVGIGVGV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            S  +      L   ++ +        F  + +                 +     E Y 
Sbjct: 62  SSIQQQFTQGNLTTTNNGLDLALNGGGFFRMSD-------DGAITYTRNGQFHIDKEGYV 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L       A+ +     +S  E+Q            +  +             
Sbjct: 115 INDLNLRLTGY---PADALGAISPSSPVELQLSANQIPPRATSDPLSGNLTAVL------ 165

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                          LD RD +                +    VY + G  +   +    
Sbjct: 166 --------------NLDSRDKVPPITPFNFANPDTYNFSTATSVYDTLG--VAHNLTTFY 209

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                        +    +DG       G  +      AL                    
Sbjct: 210 ILNAPTDPPGGEWTVWATLDGADPQVLPGGNLIFDTSGALTAASAKQTLPT-------WA 262

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
           +  G+ +   P   +                                QY S  S  R   
Sbjct: 263 LTSGAVTPWSPGLLDYTGT---------------------------TQYGSESSVDRLTQ 295

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     +   Y +   +N     +A       L     N   W   + 
Sbjct: 296 GGYSAGSLTGMGVGSDGIIQGRYSNGQTRNLGQVVLATFADPNGLKNLGNNQ--WSSSSA 353

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +          I  S      V+L +EL  +I  +++Y  + + I   D++LQTL
Sbjct: 354 SGPELVAAPGSGSRGVIQSSAIEDSNVDLTKELVDMITAQRNYQANAQTIKTQDQVLQTL 413

Query: 476 LEG 478
           +  
Sbjct: 414 VNL 416


>gi|83944165|ref|ZP_00956621.1| putative flagellar hook protein [Sulfitobacter sp. EE-36]
 gi|83845032|gb|EAP82913.1| putative flagellar hook protein [Sulfitobacter sp. EE-36]
          Length = 433

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/486 (12%), Positives = 127/486 (26%), Gaps = 59/486 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTTISPENVTVVTQR 56
           MS+ +      +     S+   SI  NI N++   Y R      T T        V++  
Sbjct: 1   MSISSALQTGVSGLRANSKAVGSISENIANSNTVGYRRGFAHMVTTTASGGNGDGVLSVN 60

Query: 57  SEN--KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           +           L + +S+         F A+    +     N              +  
Sbjct: 61  AVEELDIATAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYML-TRAGSFLPDEQGN 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            KN +   L         ++     TS ++++ +                         N
Sbjct: 120 LKNAAGYYLAGYPYGLEGDIGSVDRTSFKDMETVNIG----------------------N 157

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I     S   A   L  +D                            G          
Sbjct: 158 LNISAGVTSTITAFGNLPSQDT---------------------------GQADPGAPFVT 190

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +            S          + +   A   G     + I  +            +
Sbjct: 191 SSEVFTALGESQRVSFSWAPGTTANTWDLAIADQNGNGLGSVTIEFNNAGPAAGSPLSYS 250

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            +   + +        +  V  + + +G+   +  +  G         Q+  + S   D 
Sbjct: 251 NINSTATAPAAFTVDPATGVATITLDNGVVPQEIDITLGKPGAFDGISQFAGDFSLAFDR 310

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              S   L   + +     L   + +   +     PVA +     L+E   N   +    
Sbjct: 311 DGSSAGELVRTE-ITEDGTLFGVFDNGMRRALYDIPVAVVANPNGLVEVKGN--AYRLSG 367

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + S      +      I+        V++ +E++ LIK +++++ + K+I   D M+  
Sbjct: 368 ETGSFSALQANSSTVGSINAGALEGSNVDIAQEMTDLIKAQRAFSTNAKVITTVDDMMDE 427

Query: 475 LLEGVK 480
                +
Sbjct: 428 TTRLKR 433


>gi|304409972|ref|ZP_07391591.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183]
 gi|307302315|ref|ZP_07582073.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175]
 gi|304351381|gb|EFM15780.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183]
 gi|306914353|gb|EFN44774.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175]
          Length = 641

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 118/404 (29%), Gaps = 20/404 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   + S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNDLFAGMNSV 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + + NA++V  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               +  +           I    V+ +   +   G++ A+   RD  +    ++LD++A
Sbjct: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    L +    +               D 
Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSGNTGNATLG---VTIDD 353

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            S+     + +   +     +                     + 
Sbjct: 354 SSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSG 397



 Score = 99.7 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 100/364 (27%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +    G  +   A  V  NFN    +   +       I  +I++    L  +   +  
Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSGN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T         L          +              +   T  G+TL       I+
Sbjct: 342 TGNATLGVTIDDSSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I          Q+      
Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +     +  +  +    +    +  D       + T    P   +         +
Sbjct: 461 NRNAANFPVTGSELTIKLDTTVVPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +     +   TL +   N+   +     
Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNSGKSTLADVFENTKLDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ V+        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 SSVR 641


>gi|23092315|gb|AAN08640.1| FlgE [Aeromonas hydrophila]
          Length = 453

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 113/483 (23%), Gaps = 42/483 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +       NI N ++  +            N             V  
Sbjct: 2   SFNNALSGVNAAQKDLNVTANNIANVNSIGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L   ++++        F    + ++  D             +    SY 
Sbjct: 62  GAVAQQFHQGALQFTNNSLDLAIQGNGFFVTSDGLTNLDRT----YTRAGAFKLDENSYM 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L    ++           + + +Q                          + D
Sbjct: 118 VNNQGHYLQGYEVNVDGTPKAVSINATKPIQ--------------------------IPD 151

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                T +      F    D            ++I    ND   Y S   T+++++    
Sbjct: 152 KAGVPTKTSTIEASFNFPSDAKPLAAGNTATDASIFDPTNDKSYYASTSVTIYDSLGSPH 211

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
              +         +                      +   +    +        L     
Sbjct: 212 VITQYFVKEADPLNVTQPASPTAWRMYMYEDKKPIDVSGGVPTTMAASVTTTPPLAARVT 271

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                           + +       GI        Q +   +    Q+ S     +   
Sbjct: 272 FDADGKMITPTTPATIKTIALGTPGAGIITNGADGTQQVELKLTNVTQFSSPFEVNKLTQ 331

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             S         +     +   Y ++         +A    +  L +       W +   
Sbjct: 332 DGSTVGRLTKVEITADGIVSATYSNATTLKVAMVAMAKFANSQGLTQVGD--TSWRQSLL 389

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   F  I  S      V+L  +L  LI  ++++  +++ +     + QT+
Sbjct: 390 SGDALPGTPNSGTFGSIKSSSLEQSNVDLTSQLVNLITAQRNFQANSRSLEVNSSLQQTI 449

Query: 476 LEG 478
           L+ 
Sbjct: 450 LQI 452


>gi|325289233|ref|YP_004265414.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964634|gb|ADY55413.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 447

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 119/478 (24%), Gaps = 31/478 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +      ++   I  NI N +   Y       +                 +
Sbjct: 1   MMRALFSAVSGLQAHQKKMDVIGNNIANVNTVAYKASRVTFSD----------------I 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + L + + A        S      +       +   T   ++   +    S +     
Sbjct: 45  LSQTLSSATGADSTSGRGGSNAKQIGLGVGIGSIDTLMTAGSTESTGNSTDLSIDGDG-- 102

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               ++ N       F  +         +      L +     +                
Sbjct: 103 --FFIVKNGSTGTYMFTRAGNFSIDDSGNLVTSDGLNVYGWLNYTVNTDGTYTFDTDSEV 160

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              + +   D  +  + K      +S     +       S  + +  + P       M  
Sbjct: 161 EAINLYSDEDNGNKQILKAQATANVSLSGNLDAGESAVGSGLSDIGSSDPEAQYTTTMTV 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           Y      + + +       +     P      +     SV     +     A   +   S
Sbjct: 221 YDSLGNEHELTVSFTKCYVDASGTDP------VTTWYYSVAADSGDAALTDASGYLQFDS 274

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               +  +S   P   +              I            + S    G        
Sbjct: 275 NGKLVTDDSSYSPTATMTVTPSSASGAGEYEIELDFSNLSTSADDGSVETKGVDGYPSGT 334

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     ++  Y +   +      +A       LL+   N   ++    S      
Sbjct: 335 LEDISIDSNGIILGVYSNGIEQPLGMIALARFANPSGLLKTGSNY--YVATANSGEFTNG 392

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +      +S        V+L  E S +I  ++ Y  ++++I   D+ML+T++E  +
Sbjct: 393 VMAN---GALSSGTLEMSNVDLSTEFSQMITTQRGYQANSRMITTADEMLETIIEMKR 447


>gi|51597637|ref|YP_071828.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953]
 gi|186896771|ref|YP_001873883.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+]
 gi|51590919|emb|CAH22575.1| Putative FlgE-like flagellar hook protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699797|gb|ACC90426.1| flagellar basal body FlaE domain protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 414

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/477 (11%), Positives = 117/477 (24%), Gaps = 71/477 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
            F+ A    N  ++Q  +I  NI N+  K +    T  +       P  V V        
Sbjct: 2   SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              D         +        F  ++E         +         R  ++ Y  N   
Sbjct: 62  K--DGQKEKTGMGLDLAISGGGFFVVRE------SSGDKAYTRAGMFRSDVDGYLVNGQG 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L     D A  +     +                +L+I+N          ++      
Sbjct: 114 MKLQGYPADAAGNIQAGIIS----------------DLKINNAGVPAKASEQLDFMANLN 157

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            +    +    +  +      +    +   +   + +  Y    TTL             
Sbjct: 158 ASVTAPSVSVFNPTNEKSYNFTTTSTVYDSLGREHAVAHYFVKSTTL------------- 204

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                                      P G + +   +  +V          +     G 
Sbjct: 205 ---------------------------PAGSVASEWAVHHTVDGGAATPPLTLQFTTTGE 237

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                G  +        I        Q     +  R+       
Sbjct: 238 LISGSGTTTAGVLKGNAINLHGTFNPAGAADYDIDIDYTGTTQLSQGFTTTRNKSDGYTS 297

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
            + N + +     +   + +          +A   +   L+   +N   W E N+S +  
Sbjct: 298 GVKNGERIESDGSVYATFSNGERMLQGKVVLANFASPNGLVT--QNGTSWSESNKSGAAL 355

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           L      +   +         V++  EL  L+  +++Y  S K+I   D M+  L +
Sbjct: 356 LGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMMNALFQ 412


>gi|163856435|ref|YP_001630733.1| hypothetical protein Bpet2124 [Bordetella petrii DSM 12804]
 gi|163260163|emb|CAP42465.1| flgE [Bordetella petrii]
          Length = 413

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/476 (9%), Positives = 93/476 (19%), Gaps = 68/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +  +  N A+Q    I  NI N+    +            +  V       + N+  
Sbjct: 2   GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVSAINQRF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +                          D           +     + Y  N     
Sbjct: 62  SVGNVTVTGGEYDIAIDGPKGF-----FRLTDPSGGVFYSRNGEFLVDKDFYLVNAQGYR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                                 +         
Sbjct: 117 LTGYAAGAVGSAPV----------------------------DLRLPQGNIAPKPTDAAG 148

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            + + +   D  D         +  +        +     +   L +   +       N 
Sbjct: 149 LQTNLNANADAIDPATSPFDPTLASTYTDSVPTTVYDSLGNAHQLTQYFVKRAGDTVTNE 208

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                      +DG  +     +A   G    L                           
Sbjct: 209 SVYE---VYYTLDGEAMDPTTEAAGVWGGATTL--------------------------- 238

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     +                +                  +    +   +      
Sbjct: 239 TFDAAGRLTSAPTVDLSFATPGGTTSPADPLAITMSYDGVTQYGSDFSPKITQNGYSSGE 298

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           ++  ++     L  +Y +          +A  N    L     N   W E   S    L 
Sbjct: 299 YSGLSINSDGTLQANYTNGETAIIGTLALANFNNVQGLQPVGNN--AWAETGASGQPTLG 356

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +         V++ +EL  +I  +++Y  + + I   D+++Q L+  
Sbjct: 357 QPGTNGLATVVGQAVEASNVDMSKELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 412


>gi|77463646|ref|YP_353150.1| FlgK flagellar hook-associated protein 1 [Rhodobacter sphaeroides
           2.4.1]
 gi|77388064|gb|ABA79249.1| FlgK flagellar hook-associated protein 1 [Rhodobacter sphaeroides
           2.4.1]
          Length = 1363

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 127/452 (28%), Gaps = 30/452 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVT 51
           ++ + A++   +     +    NI N + + YVRR+ +                S + V 
Sbjct: 2   SILDIARSGLLSYRSALSVTAENIANVNTEGYVRREAVLAQVPGGQISPTSAATSGQGVR 61

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   R     +  + L     A      L +     E +        S    ++   D+L
Sbjct: 62  VEDVRRAFDGLVAQRLRTAEGAAASAETLDTTAGALESLFL--AGAGSVPEALTGFFDAL 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                   +  L + V+   + +  +F T A  +  +R +         +   + L +L 
Sbjct: 120 NGLGATPRDSALRQVVLAAGQTLASSFTTVASGLAGLRDEVAGLAGQTAAEASQTLRQLA 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  +     S  +    LD+RD LL ++S  +G+           V            
Sbjct: 180 ELNGRMTGAQQSALNP--LLDERDRLLGELSRTVGVQASFDALGRTTVTLGS----APGG 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P  +     ++  V      +       ++ Q   +  G ++       +V      +LD
Sbjct: 234 PLLLEGTAASTLGVAEAGGLVLEVTRAGATLQSRQITGGSLQGYASALSAV-DNAAAELD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA----DGIKDLDNKLCQGISETICVNPQYRSN 347
            +AR L+   +       +     G  +       +         G +  +  +      
Sbjct: 293 ALARQLVAEMNTVHAQGIDQSGARGGDLFALEGWQVAADAGNRGTGGASVVAFDIATAPG 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  L    +      ++                          + G    V+  +     
Sbjct: 353 PLTLLHDAAAGLWHAYDAGGTLLGSGAETLALPGLTLQMTGAAMDGDRLTVSPRQGRALD 412

Query: 408 IGWLEKNRSD----SHDLHMKSQVVFNHISES 435
           + +L  +       +  +   +         S
Sbjct: 413 MRFLLTDTRQIAAAAPYIVSAASGNAGSAQAS 444


>gi|309779453|ref|ZP_07674214.1| flagellar hook-associated protein FlgK [Ralstonia sp. 5_7_47FAA]
 gi|308921694|gb|EFP67330.1| flagellar hook-associated protein FlgK [Ralstonia sp. 5_7_47FAA]
          Length = 645

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 156/450 (34%), Gaps = 16/450 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N   +    A         NI NA    Y R++ + T +           +   V 
Sbjct: 3   SSLLNIGASGLRVADINLQVTGNNIANASTPGYSRQEAVQTENIPLYAGVGYLGQGANVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  ++      L S  +      +D   N+  T  ++   ++ + 
Sbjct: 63  TVKRIYDQFLTAQVQSGQASTSAADQLNSLVSGLSKYMSD--SNSGLTSSLTSFFNAADG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   S+    +  ++ A  +   FN+ A ++  + +  + +++ +IS +     ++  +
Sbjct: 121 LASKPSDTTARQVFLNAAAGLQSRFNSIAGQLSSLNSQVNTQVQTQISAVNGTAQQIAAL 180

Query: 174 NDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ND I    AS    A+D  DQRD L+Q +++ I  S +   +    +Y  +G  L +   
Sbjct: 181 NDQISKAEASTGQPANDLRDQRDQLVQTLNQSIKASVVQTGDGQFNIYVGNGQALVQGNQ 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + Y  T  S      G  V+ +  S +  G +  L+  R++ +   QN L  
Sbjct: 241 SYQLTAVPSQYDPTQLSVGYKSPGGTVNID-DSQLGGGALGGLMDFRNNTLIPAQNSLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  +    + ++ +  ++    G  +                          +N     
Sbjct: 300 LATAVSADVNAQNKLGMDANGKMGTDLFSVANPSVAPSTNNTGSGSLTASITNANAGQGY 359

Query: 353 DGGSVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           D     +   + V           ++ +  + +   +       + +  L+    N+   
Sbjct: 360 DYQVKYQGGAYTVSHYPDGSASVTVSSWPTTIDGVTLNLSGTMNSGDSFLVRPTANAAAT 419

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           ++   +D H++   S VV N  S +  +  
Sbjct: 420 MQTLTTDYHNVAAASPVVLNQGSNNTGSAT 449



 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/436 (8%), Positives = 110/436 (25%), Gaps = 1/436 (0%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               +++     ++ +      V +  +   G Q    +    +   +       SP   
Sbjct: 207 QTLNQSIKASVVQTGDGQFNIYVGNGQALVQGNQSYQLTAVPSQYDPTQLSVGYKSPGGT 266

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           ++     L   +     D    T+I     + +     + +V               ++L
Sbjct: 267 VNIDDSQLGGGALGGLMDFRNNTLIPAQNSLGRLATAVSADVNAQNKLGMDANGKMGTDL 326

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               +     +       +      +    +    Q   +    +     +    V  S 
Sbjct: 327 FSVANPSVAPSTNNTGSGSLTASITNANAGQGYDYQVKYQGGAYTVSHYPDGSASVTVSS 386

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             T  + V  +++    +  +            +   +     V       L Q  ++  
Sbjct: 387 WPTTIDGVTLNLSGTMNSGDSFLVRPTANAAATMQTLTTDYHNVAAASPVVLNQGSNNTG 446

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSE-NVPGLFIADGIKDLDNKLCQGISETICVNP 342
               + L   +       +    +  +S            +           +       
Sbjct: 447 SATVSSLGVDSTYAGSPLTSPINLTYSSAVGGSLSGFPGSVTVTVGGTSTTYAGGTAPYT 506

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q  +                 +   ++          ++     + +         ++  
Sbjct: 507 QGATYAFNGVQMTLSGSPGNGDTFAISANTANSTDNRNASALAKLRNSNLLDGGTTSIGS 566

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N +  +    + +       + +    ++   +  GV+L EE   L+K +Q+Y  S 
Sbjct: 567 AWNNLVTQVGVQANRASTNLTSQKALLASSTQQQQSVSGVSLDEEAMNLMKYQQAYQASA 626

Query: 463 KLIMFTDKMLQTLLEG 478
           K++   + +  +LL  
Sbjct: 627 KVMQTANSLFGSLLSI 642


>gi|311030122|ref|ZP_07708212.1| Flagellar hook protein FlgE [Bacillus sp. m3-13]
          Length = 493

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/499 (9%), Positives = 118/499 (23%), Gaps = 27/499 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------E 48
           +L     +     N   +   I  NI N +   + +                        
Sbjct: 1   MLRSMYSSIGALRNFQTKLDVIGNNIANVNTYGFKKGRATFQEMMVQQLSGASGPAAGKG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V            + +       L   +  +        F A+  +        +S T+
Sbjct: 61  GVNAKQIGLGSMISTIDTIQTQGSLQTTARPLDLALSGDGFFAVASIADVTRVNVDSDTN 120

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
           Y       L     N       ++     +      N++   +     +     +  +  
Sbjct: 121 YGDNKI--LGGAVNNAVAMNYTRSGNFYLDNNGYIVNSNGMYMVGETGEKRIPNDQIMEA 178

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
               L+   +  D  +      +   D   +     +   +    + +    ND  +  +
Sbjct: 179 SNAALNSGEIFFDEYRDFRNDTNKFLDLSMKFLEAQRTFEDAEKAN-LESGGNDPQLAAA 237

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                         F   N+    ++          ++    S + +    A   I   V
Sbjct: 238 ATAAETARDNAATQFNDFNTDIYVNQRTAFTTSAQNMNDGIDSFIGETGEVAYRMIDPVV 297

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                         +    +    ++        L  A    +      + I +    + 
Sbjct: 298 QDPTIPMPTAATANVNDLSN---LVSYAQSVKTSLDTAYKTFENFIAKAEMIQQPTWTDS 354

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              S         + S     + K                      +          L +
Sbjct: 355 LSGSPGLIQIPPNARSFSISGDGKVNFIDQFGDLKVAGQLMLAKFPNDAGLERIGENLFQ 414

Query: 403 YARNSIG-WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
            + NS       +     ++          I         V+L EE + +I  ++ +  +
Sbjct: 415 QSNNSGTMDKNGDGIQLEEMFKPGDDGAASIISGTLEMSNVDLSEEFTEMITAQRGFQAN 474

Query: 462 NKLIMFTDKMLQTLLEGVK 480
            ++I  +D++LQ L+   +
Sbjct: 475 TRIITTSDEILQELVNLKR 493


>gi|220905353|ref|YP_002480665.1| hypothetical protein Ddes_2091 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869652|gb|ACL49987.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 499

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/508 (7%), Positives = 126/508 (24%), Gaps = 39/508 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           + +            ++       N+ N     Y ++  + +                  
Sbjct: 1   MNSSLYIGATGMKGLAEGMNVTTNNLANVSTIGYKQQGILFSDIFYAEQGGMGNWWNAQD 60

Query: 45  ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                  +    +   S         L + ++        + F  + + +       +  
Sbjct: 61  NSRVALGQVGMGLQVESVRTLFGQGALESSNTVTDMAISGKGFFQVTDGV-------DLY 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  R   E   +  S   L     +           +  +   + + +   +++  
Sbjct: 114 YTRAGDFRPDREGVLRTPSGLALNGYKYNADGSKGGLQQITIDKFATMPSKSTTSVDMRF 173

Query: 161 SNLRRFLSELTVVNDAIK--------FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +      +     N                  + A+ +     +  +  ++         
Sbjct: 174 NLGLETPNSTDAANPYFSLLNTYDANASPPLSNLAYGYAQSITLYGENGNQQQATIYFDA 233

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +D               PRD N     +  + + +      G +      +   +G  
Sbjct: 234 APSDRPGSVVQYLISTGNTPRDENGLAPGTGALMTGTLTFDAKGQLTDMTAFTPSAEGSK 293

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                   ++      Q+         +          +       +      L      
Sbjct: 294 DLADWAPSALSDGGLPQMTVNGVATTVNLGISAAGGWQNAPANAAAVGASQNALGGMGQD 353

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                        S+P   R+  +   +   +  +++   D++  + ++ + +    PV 
Sbjct: 354 ATVAVDATTNYKGSSPVTRRNNQNGYPEGFLSNISISANGDVVGLFSNNQSMDLWQIPVC 413

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
              +   L     N         +   D+       +  I         V++  E++ +I
Sbjct: 414 RFTSEDGLRREGHNMFS--ATADAGQMDMGEAGTENYGTIRAYNIENSNVDVATEMANMI 471

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  ++K++   D+MLQ  +E  +
Sbjct: 472 ITQRGFQSNSKVVTTADQMLQKAVELKR 499


>gi|325921024|ref|ZP_08182906.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865]
 gi|325548506|gb|EGD19478.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865]
          Length = 407

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 102/476 (21%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E   A               +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +         S  ++                                     
Sbjct: 122 LQVFAPNPSGNGFDVGRLSDLQLL------------------------------------ 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D   +  S +    T+  N     V   +                 +S
Sbjct: 146 ----------TTDSPPKSTSTVNLAFTLPGNATAPTVTPFNPADDKTYSHSTGGINVYDS 195

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V+      F+     +  Q      G                                
Sbjct: 196 LGVSHVQTSYFVKTANPNEWQVHNYVDGAAVGAPTA-----------------------L 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +       +    G+   D            +   +  + QY    +             
Sbjct: 233 QFSDTGALTNPANGIIAMDPFTPSTGAGVLNMQLNVTGSTQYGEAFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +  + 
Sbjct: 293 LNEISIDTSGVVFARYSNGADKALGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARIG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I         V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|331007440|ref|ZP_08330617.1| Flagellar hook-associated protein flgK [gamma proteobacterium
           IMCC1989]
 gi|330418747|gb|EGG93236.1| Flagellar hook-associated protein flgK [gamma proteobacterium
           IMCC1989]
          Length = 1062

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/454 (14%), Positives = 143/454 (31%), Gaps = 19/454 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
              +   + +    +     ++  NI NA+   Y R+ T                     
Sbjct: 2   TSDILGVSISGLRVSQNALRTVGHNIANANTAGYTRQSTDINSMGGTQTGVGFLGNGSYT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                         +   ++   +  +     +    + A+D  +   +  +     +++
Sbjct: 62  SNIERVVNEFVTAQVRQDTTLHSELTIYNQNISQLNDLLAND--STGLSQGVQSFFSAVQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S + +     + ++  A  +   FNT A  V  +     + I   +SN+    +E+  
Sbjct: 120 TASDSPTSLASRQLLVSEASNLADRFNTLAARVDAVNEGVVQGIRAGVSNVNNLTAEIAS 179

Query: 173 VNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +N+ I   + S     +D LDQRD  L ++S +I +S  V++ N + V   +G  L    
Sbjct: 180 LNNKIAEFSGSQSASPNDLLDQRDNALLELSALISVSVSVQDGNQINVTVGNGIPLVLGS 239

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            +       N +        I +    +S +  SA   G+I  LL  +++V+    N + 
Sbjct: 240 QQTSIAVGQNEFDPQKP--EILLVNNSISESITSAFSGGEIGGLLDFQNTVIDSTYNDIG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +  +F++        +N  G  I        N         +        NP  L
Sbjct: 298 RIAISIADTFNQLQSQGLTLDNAYGSDIF----TDINDTAIAQERILSNVNNGSGNPDIL 353

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            +    S+    +          +       +   +   +       T+     + +   
Sbjct: 354 VNINDSSQLTTSDYSLTIDDGAGVYQITRLSDNTDVASNLIPTTFPATISFDGLDVVINS 413

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                    L   ++    + S +      V L 
Sbjct: 414 GGFSGGDQFLIQANKTAAQNFSTTGLQASDVALA 447



 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/432 (7%), Positives = 98/432 (22%), Gaps = 4/432 (0%)

Query: 51   TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                 R+   +       A +S       +       +     D+      + +      
Sbjct: 630  GGSDVRAYITDTAQGSALAFASPTHGAGDIVLQNYNADPDGTLDNAPAGQANTLLGFDVE 689

Query: 111  LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +   +       +             +   V           +   +         
Sbjct: 690  ATTSTTGFTTVANANGISGIGLATNNYPVETLTVVTTNPTTGTTSSQNIFTTAGASARTT 749

Query: 171  TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
                  +    A+  +  +       L + +   +   +++  +  ++  +     L   
Sbjct: 750  AGQLSNLTGVNANASNYMELSGSALTLTEPLQLSLNGESLIEYDAGVIATSVPSPALNNG 809

Query: 231  VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               +       +     ++  I+      +S     V            +          
Sbjct: 810  EDFNDYLANEINNNTNLQALGIYATSAYDASTDTFHVSINSPLGDDFSVELTAAATGGGS 869

Query: 291  DEMARVL----IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              +   +      + S  +  +                 L       +         +  
Sbjct: 870  VSVNDGVGTNVALTGSGTNTSSQVVIGGRIDVSLSSDVSLSTNPETSLLFGDSSADGFAQ 929

Query: 347  NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                             +   L    +  +   +  + + +           +  E    
Sbjct: 930  TAYMGIQASISGTPQTGDYFTLGFNTNAESDNRNGISMSGLQQASTIEGETQSFQETYNK 989

Query: 407  SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
             +  +  N + S +    +  V    +   ++  GVNL EE + LI+ EQ Y+ + ++I 
Sbjct: 990  LVETIGINANSSQNNTEAAANVLEQTTSLRNSISGVNLDEEAADLIRYEQLYSANAQVIT 1049

Query: 467  FTDKMLQTLLEG 478
                +   LL  
Sbjct: 1050 VARDLFDRLLSS 1061


>gi|89075502|ref|ZP_01161913.1| hypothetical flagellar hook-associated protein FlgM [Photobacterium
           sp. SKA34]
 gi|89048774|gb|EAR54345.1| hypothetical flagellar hook-associated protein FlgM [Photobacterium
           sp. SKA34]
          Length = 778

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/408 (12%), Positives = 132/408 (32%), Gaps = 20/408 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +     +    + +Q      NI N     Y R+      +               + 
Sbjct: 3   SDLMQLGISGLRTSQKQLDVTSHNISNVHTAGYSRQVVDQKAADAQWSGGNYYGSGAYID 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +          + L   ++ +    + Q    + +  ++    N    + ++   +S+ S
Sbjct: 63  SVNRAYDQFAARELTLSTTQLEASDVRQQHMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S + ++    +TV+D+A +  ++FN+S   +  IR D ++++ + +  +     E+  +
Sbjct: 121 LSDHPNDLGSRQTVLDHANQAAKSFNSSHEMLTNIRRDVNEQLGVTLDRVNALGQEIAAI 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232
           N +++         HD LD++  L+ ++++   ++ +    +    V    G TL   V 
Sbjct: 181 NTSLQEM-PDGDQNHDLLDKQRGLINELAKYTKVTVLADKGSLADKVIIGSGDTLVSGVE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                       +  +   +                 G + A+L IRD V+    +++  
Sbjct: 240 SSQLKMVNGDPDLEDKQIALINGNQAKPIKSDDI--GGGLGAMLFIRDDVIDKSLDEMGR 297

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       ++      +     G  +   +    N         +            + 
Sbjct: 298 MAIGFSKQINDLQQSGTDLTGAIGSALFSDV----NSPTLVKERVLKPLGSQTDIDVKID 353

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           D  ++            G       +  + N+    D  A I++  TL
Sbjct: 354 DVNALKTGDYELTAEFDGTDYSFRLFDPAGNEMKKPDGSAFISSTGTL 401



 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/391 (10%), Positives = 93/391 (23%), Gaps = 7/391 (1%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              ++       L   +      L+ + +        +          R    I  +   
Sbjct: 389 PDGSAFISSTGTLPVEVNVDGLTLTMNTVMGNPPATGQSETVIIQPMRRGAANISVEMSD 448

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
              L        +             T + +          + +   +++   +      
Sbjct: 449 PRGLAGHRQTALIEANPNNAGTAALTTVTDNTPDAVAGNYQIDIINSADLTATNGTGNTG 508

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNS-----YTVTSESNPIFIDGVVVSSNQGSAVPK 269
                               ++              ++  N I   G  V+         
Sbjct: 509 TAQFDAIKGAAAEAAQGVYTLSLNATGDKISMVDAASNPINLIDETGTPVTELDYPLTTT 568

Query: 270 G-KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           G  +  +      V          +           D +   +     L   D       
Sbjct: 569 GNTLTMVASDGSQVSVATLGAGAVVGDTFTLEIKTSDKLTVKNTQTNTLVDLDDGSGTPV 628

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
           +              +    +         +    N     G    +    +      I 
Sbjct: 629 QALAYPLTNANKEITFAGQATPTFSLTDNGQAGD-NFTVSLGRSSAVGGNSNFLAMQQIQ 687

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                     ++++        +   +S++      +Q+ F+  SE  SN  GVNL EE 
Sbjct: 688 HEKTMNEGKSSVIDLFEGLATDIGMMKSNADKTAEVNQLDFDAASERVSNLSGVNLDEEA 747

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + L+K +QSY  S++++    +   TL+  V
Sbjct: 748 ANLMKFQQSYMASSRIMSVAKETFDTLMRAV 778


>gi|317492428|ref|ZP_07950857.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919767|gb|EFV41097.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 414

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/476 (11%), Positives = 116/476 (24%), Gaps = 67/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            FN+A +  N A+     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFNQAVSGLNAAASNLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVKVASVQQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D +    +  +        F  +++                 +   + +++  N     
Sbjct: 62  TDGITTTTNRGLDVAISGNGFFRMQDA------NGGVYYSRNGQFTKNQDNFLTNAQGVF 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L              +  +       +      I++    +    S    ++  +     
Sbjct: 116 L------------TGYPAAGSPPTIQQGAQPSPIQIPTGMMPAKASSSGNMSMNLNSSHE 163

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              ++   +D  D      S  I     + N ++M +Y   G  +  T P          
Sbjct: 164 VPKNSPFKVDDVDSYTYATS--ITTYDSLGNTHNMNLYFVKGAPVAATPPATGMTTPWTV 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           Y+V S +                                                     
Sbjct: 222 YSVDSAAAAGTAPQNA-----------------------------------------GKL 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E D           L +     +        ++ T  +      +               
Sbjct: 241 EFDQNGTLQNPGTPLALNMAANNGAPAQNFNLTFTGSMQQNTGKD-GVTAKSQDGYAAGE 299

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A       L     N   W E   S    + 
Sbjct: 300 MTGYQINDDGTITGTYSNQQTQLLAQIVMANFANPEGLQSEGNNM--WKESATSGQAIVG 357

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        ++        V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 358 VAGASGLGALTSGAVEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 413


>gi|160876197|ref|YP_001555513.1| flagellar hook-associated protein FlgK [Shewanella baltica OS195]
 gi|160861719|gb|ABX50253.1| flagellar hook-associated protein FlgK [Shewanella baltica OS195]
 gi|315268387|gb|ADT95240.1| flagellar hook-associated protein FlgK [Shewanella baltica OS678]
          Length = 641

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 110/352 (31%), Gaps = 17/352 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNNLFSGLNSI 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + + NA++V  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               +  +           I    V+ +   +   G++ A+   RD  +    ++LD++A
Sbjct: 239 SMGTQAGNPFPKELQLNSSISSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             +  +F++      +     G  I   I D    L +    +         
Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRAAGFSGNTGNATLG 348



 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 98/364 (26%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +    G  +   A  V  NFN    +   +       I  +I++    L      +  
Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRAAGFSGN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T         L          +              +   T  G+ L       I+
Sbjct: 342 TGNATLGVTIDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSILSGGSGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I          Q+      
Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +     +  +  +    +    +  D       + T    P   +         +
Sbjct: 461 NRNAANFPVTGSELTIKLDTTVLPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +     N   TL +   N+   +     
Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ V+        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 SSVR 641


>gi|170683657|ref|YP_001744098.1| flagellar hook-associated protein FlgK [Escherichia coli SMS-3-5]
 gi|170521375|gb|ACB19553.1| flagellar hook-associated protein FlgK [Escherichia coli SMS-3-5]
          Length = 547

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/546 (9%), Positives = 134/546 (24%), Gaps = 70/546 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYISKL 107
              + E        L A  +            +  + M +    +           +  L
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF- 166
             + E  +   +     + +++  +   Q      ++V      +  +I      +    
Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180

Query: 167 ------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
                        S   +++   +  +         +  +D     I+   G S +  + 
Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
              +           T    I+    N        N   + G++   +Q     +  +  
Sbjct: 241 ARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300

Query: 275 L------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
           L                D+     ++        ++ +   K  +A  +       +   
Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
              +     Q  +  +  N  +   P           +  +           +    D+ 
Sbjct: 361 DYKISFDNNQWQATRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420

Query: 383 NKNFI------------------------------FDPVAGINTNVTLLEYARNSIGWLE 412
               +                                    +    +  +   + +  + 
Sbjct: 421 VNMDVLITDEAKIAMASEEDVGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIG 480

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +           V   +S    +  GVNL EE   L + +Q Y  + +++   + + 
Sbjct: 481 NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 540

Query: 473 QTLLEG 478
             L+  
Sbjct: 541 DALINI 546


>gi|77918787|ref|YP_356602.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544870|gb|ABA88432.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM
           2380]
          Length = 413

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/491 (8%), Positives = 118/491 (24%), Gaps = 89/491 (18%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M+L +      +  N      + I  NI N +   +    T+ +            + + 
Sbjct: 1   MALSSALYSGISGMNTNGTAMSVIGNNIANTNTVGFKSSRTVFSDLLASSVNGSGGASQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                  + +            S        +    ++E     +   +           
Sbjct: 61  GRGTGLSTVDNLFSQGTFETTESQTDLAIEGEGLFVVRE-----EGAESLYYTRAGSFSF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E +  N     +      N                                       
Sbjct: 116 DGEGFLTNAEGYRVQGKTYVNG-------------------------------------V 138

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L+  +        +        D+  +     +    I+     N+      S+ TT+++
Sbjct: 139 LSSADATDIMVDINAGIEAKMTDKITLSTNLDANEPVITAAFDPNDTTTYNYSNSTTIYD 198

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           ++            +  +  +   +D    +                             
Sbjct: 199 SLGNTHLMTTYFIKSDDNTWDWNVVDENDAT----------------------------- 229

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                     + +  +      +   G      +        Q I+  +    Q+ ++  
Sbjct: 230 ----LYSSATAGNSLEFDTSGKQISGGTATLGPLTPGAGTASQTINFALKNTTQFANDSQ 285

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +    +          ++    +++  Y +          +A  ++   L +   +   
Sbjct: 286 VISQTQNGYGAGNLTNISIDNEGNVLAKYSNGEEIAKSRIVLAKFSSFSGLRKEGASLFS 345

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S    + +    +  +I  +      V+L  E   +I  ++ +  ++K+I  TD
Sbjct: 346 --ATGESGPPRIGVPGTEL-GNIFTNALEQSTVDLAAEFVKMITTQRGFQANSKVITTTD 402

Query: 470 KMLQTLLEGVK 480
           +ML  L+   +
Sbjct: 403 EMLSELINLKR 413


>gi|170742313|ref|YP_001770968.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46]
 gi|168196587|gb|ACA18534.1| flagellar hook-associated protein FlgK [Methylobacterium sp. 4-46]
          Length = 623

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 127/434 (29%), Gaps = 20/434 (4%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENKNMFDKVLHAH 70
                      + +N+ N     YVRR       P    V   T          + L   
Sbjct: 12  GLQVTQAAIGIVSQNVANQGTPGYVRRTLTPVSQPGNSGVATGTVTRALDASALRQLRLE 71

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
           ++      L+ S  A  + +      +++     +    SL + + + +        +  
Sbjct: 72  TAGAAYTDLVSSVHAQIDALYGPPGSDSALDGITNAFAASLRTLASDPASAANRSAAVTA 131

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH-- 188
           A  +      +A  VQ++R+  + ++  ++++    LS +  +N  I        D+   
Sbjct: 132 AGRLAGKVADAANGVQQLRSGLETQLGADVASASTLLSRIADLNLRIAAAGGGAGDSRAA 191

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN------------ 236
           D  DQRD  +  +++ + + T    +  + V T  G TL +                   
Sbjct: 192 DLADQRDQAITDLAKYMDVQTSPAADGTVSVQTGSGVTLVDHGAAASLRFDGRGALGPSS 251

Query: 237 -FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            +    +         +   G  +       +  G I A + +RD  +   Q QLD++A 
Sbjct: 252 RYGTDATARGVGTITAVTPSGARIDLLADQGIRSGAIAAAVSLRDDTLVQAQRQLDDLAA 311

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L  + S++      +    G      +  L       +                L   G
Sbjct: 312 GLSRAMSDRQATGTPATGAAGSGFDIDLTGLQAGNAVTLGLRSAAGVNRN---VILVPTG 368

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +   +           ++       +  +     A +    T+      + G +    
Sbjct: 369 GNAPSPIDPALTDDPTALVVPFDISGGSSTYAGAIAAALGPGFTVSAVPSGAAGAVRILA 428

Query: 416 SDSHDLHMKSQVVF 429
           S        + +  
Sbjct: 429 SGVALTSASASITV 442



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 73/257 (28%), Gaps = 7/257 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +          +   +   T+   P  I G   +     A   G    +  +        
Sbjct: 365 VPTGGNAPSPIDPALTDDPTALVVPFDISGGSSTYAGAIAAALGPGFTVSAVPSGAAGAV 424

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +     +A     +         ++ N                +  G  E          
Sbjct: 425 RILASGVALTSASASITVPTSPTDTRNGAPQIPLFVDSGHGGSVYTGSFEGGAHLTGLAQ 484

Query: 347 NPSFLRDGGSVSKKFLWNVKNL-AGYPDLINHYCDSFNKNFIFDPVAGINTN------VT 399
             +      + + + + +            +   D+  +       A            +
Sbjct: 485 RLAVNGAIAADTSRLVASADGTQDADAARPSFLADALTRESRTFSAASGIGGVQAPARAS 544

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           +  +A+  I       + +  L    ++  +     +S T GV + EELS LI+++ +Y+
Sbjct: 545 VQAFAQAVIAAQGAAAAQAGQLDEGQKIALSTAQGRFSETSGVTIDEELSRLIQLQSAYS 604

Query: 460 ISNKLIMFTDKMLQTLL 476
            + +++     +L TL+
Sbjct: 605 ANARVLTAARDVLDTLM 621


>gi|332701537|ref|ZP_08421625.1| flagellar hook-basal body protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551686|gb|EGJ48730.1| flagellar hook-basal body protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/535 (8%), Positives = 128/535 (23%), Gaps = 59/535 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--------TV 52
           M L      A +   + S+  + I  N+ NA+   +            +          V
Sbjct: 1   MGLSNSMWTAISGLTSHSESMSVIGNNLANANTLGFKSGTVHFEDMFYSQLSTASGFDQV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                 +    +            +    +       +  +    ++          +  
Sbjct: 61  GHGSRVSTIYTN--YTQGPHEASSESTHVALGGKGMFVVTNKTSGSTYYTRAGNFTFNQN 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQ-------------NFNTSAREVQKIRADADKEIELE 159
            Y  + +  ++      +     +             ++ +  +  +K+R  ++ +   +
Sbjct: 119 GYLTDPNGYVVQGWKAADGSSDGKVTTVGSLKDIRLESYQSPPKATEKVRFASNLDKNSD 178

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +++       ++  +          D          +  +      ++      +   +
Sbjct: 179 DNSVDPTNPFFSLFTNWDGTAETPLGDDRYAYQTTIKVYDEGGTAHDLTVYFDPVDAASM 238

Query: 220 YTS-----------------DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
                               DG TL +    +         T T   +       + +  
Sbjct: 239 AADPNGKRVFEYVVTCDPAQDGRTLADGTQLNTTSSAGMLMTGTITFDGSGNMVGMNAFT 298

Query: 263 QGSAVPKGKIKALL-----------------QIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             SA     + AL                           F    D +   +    S+K 
Sbjct: 299 LDSAATGATVSALSSWVPAELSDNGMPTLTANFTGQPNASFTTDADALPIEIDFGLSDKT 358

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +  N           G              +      Y  + +                
Sbjct: 359 NVGWNIPAGVTSAANVGTDFTLLPNYDTPDRSATAFTSYDESSTSTVQTQDGYAPGFLQD 418

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +    +     VA  +    L +   N     E   S        +
Sbjct: 419 ISVNDDGVVSGQYSNGQIIDLFVLAVADFDNYQGLKQEGGNLFS--ETTESGMARTGTAN 476

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 I+ +      V++  E+  LI +++ +  + K+I  TD ++  ++   +
Sbjct: 477 VGGRGDIASATLEQSNVDMSTEMVRLITIQRGFQANGKVITTTDTLMGEVINLKR 531


>gi|83955135|ref|ZP_00963791.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1]
 gi|83840464|gb|EAP79637.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1]
          Length = 433

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/486 (12%), Positives = 127/486 (26%), Gaps = 59/486 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTTISPENVTVVTQR 56
           MS+ +      +     S+   SI  NI N++   Y R      T T        V++  
Sbjct: 1   MSISSALQTGVSGLRANSKAVGSISENIANSNTVGYRRGFAHMVTTTASGGNGDGVLSVN 60

Query: 57  SEN--KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           +           L + +S+         F A+    +     N              +  
Sbjct: 61  AVEELDISTAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYML-TRAGSFLPDEQGN 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            KN +   L         ++     TS ++++ +                         N
Sbjct: 120 LKNAAGYYLAGYPYGLEGDIGSVDRTSFKDMETVNIG----------------------N 157

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I     S   A   L  +D                            G          
Sbjct: 158 LNISAGVTSTITAFGNLPSQDT---------------------------GQADPGAPFVT 190

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +            S          + +   A   G     + I  +            +
Sbjct: 191 SSEVFTALGESQRVSFSWAPGTTANTWDLAIADQNGNGLGSVTIEFNNAGPAAGSPLSYS 250

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            +   + +        +  V  + + +G+   +  +  G         Q+  + S   D 
Sbjct: 251 NINSTATAPAAFTVDPATGVATITLDNGVVPQEIDITLGKPGAFDGISQFAGDFSLAFDR 310

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              S   L   + +     L   + +   +     PVA +     L+E   N   +    
Sbjct: 311 DGSSAGELVRTE-ITEDGTLFGVFDNGMRRALYDIPVAVVANPNGLVEVKGN--AYRLSG 367

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + S      +      I+        V++ +E++ LIK +++++ + K+I   D M+  
Sbjct: 368 ETGSFSALQANSSTVGSINAGALEGSNVDIAQEMTDLIKAQRAFSTNAKVITTVDDMMDE 427

Query: 475 LLEGVK 480
                +
Sbjct: 428 TTRLKR 433


>gi|329402361|gb|AEB91479.1| hook-associated protein 1 [Helicobacter pylori SS1]
          Length = 606

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  100 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ T L   +
Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDTFLGIKQ 606


>gi|210135277|ref|YP_002301716.1| flagellar hook-associated protein FlgK [Helicobacter pylori P12]
 gi|210133245|gb|ACJ08236.1| flagellar hook-associated protein 1 [Helicobacter pylori P12]
          Length = 606

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTAGFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++        F+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTAGFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|34498334|ref|NP_902549.1| flagellar hook-associated protein 1 [Chromobacterium violaceum ATCC
           12472]
 gi|34104188|gb|AAQ60547.1| flagellar hook-associated protein 1 [Chromobacterium violaceum ATCC
           12472]
          Length = 595

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/394 (11%), Positives = 118/394 (29%), Gaps = 15/394 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----------DTMTTISPENVTVVT 54
            VF    +  N A    +    NI N +   Y  +          +       + V   +
Sbjct: 7   DVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQGVDATS 66

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       +    +                 M  +     S +  I     ++++ 
Sbjct: 67  VMRTYNQYLVTQMQTAQTNSSYYTTQSQQLQQVANMIQN--STQSVSPAIQSFFGAMQTL 124

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           ++  +     + V+  A+ +  +  +   ++Q+I+   + +I   + ++     ++  +N
Sbjct: 125 TQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQGVNNQISSSVQSINALAQQIANLN 184

Query: 175 DAIKFKT---ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             I   T    +    +  LDQRD  + ++++++G +    ++    V    G  L    
Sbjct: 185 QQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPLVVGT 244

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                  + +     +    +      ++    + +  G++  LL  RD  +   Q QL 
Sbjct: 245 TTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQKQLG 304

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  L  + + ++ +  +                     Q  +    V     S  +  
Sbjct: 305 TLAINLSAAMNYQNSLGMDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQLACA 364

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +           V     + +L   Y    NK 
Sbjct: 365 SNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKT 398



 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/439 (9%), Positives = 116/439 (26%), Gaps = 15/439 (3%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS----- 110
           +   + + +++  +  S     + + +        +  +     P   + +   +     
Sbjct: 156 QQIQQGVNNQISSSVQSINALAQQIANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLN 215

Query: 111 -LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L   + N + D      I + + +V    T + + Q+   +    +             
Sbjct: 216 QLVGATINKNSDGSYNVSIGSGQPLVVGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTML 275

Query: 170 LTVV-NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
              + N        +  D      Q+ +    I+    ++       D+   T       
Sbjct: 276 PNNIMNGGQLSGLLNFRDGPLVQTQKQLGTLAINLSAAMNYQNSLGMDLNGNTPGAAIFQ 335

Query: 229 E--------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           +                  M+  +  + ++ +   G    S    +     +    Q   
Sbjct: 336 DLSKYVNNPQYAAGQFGVVMSDPSQLACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDI 395

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           +  P   + + +     +   +              +   +G    +  +   +  +  +
Sbjct: 396 NKTPPVLDSVTQHPSYQLTGMTVTASATSPITMTATITGTNGGGPYNVVVDPTLPNSYKL 455

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                                      +       N    +  +         +    + 
Sbjct: 456 QTTAVPPVDVGIGFQLSGVPATNQTFTVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSY 515

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             +    +  +    +  +  +  +Q       ++ SN  GVNL +E + LIK +QSY  
Sbjct: 516 QGFYSTMVASVGNATNTVNLQNQTAQTTLQEAQKNNSNASGVNLDQEAANLIKYQQSYQA 575

Query: 461 SNKLIMFTDKMLQTLLEGV 479
            +K+I        T+L  +
Sbjct: 576 CSKVIQIAQSTFSTILNAL 594


>gi|21242727|ref|NP_642309.1| flagellar hook protein FlgE [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294625274|ref|ZP_06703913.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664591|ref|ZP_06729932.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325927875|ref|ZP_08189099.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118]
 gi|21108203|gb|AAM36845.1| flagellar biosynthesis hook protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292600448|gb|EFF44546.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605648|gb|EFF48958.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541715|gb|EGD13233.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118]
          Length = 407

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/476 (8%), Positives = 106/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +             +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       ++      +    + +      AL    + ++                   
Sbjct: 208 KTANPNEWQVYNYVDGAAVGAPTTLQFSDTGALTTPANGIIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                             D            +   +  + QY    +             
Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVTGSTQYGEAFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I         V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|187478185|ref|YP_786209.1| flagellar hook protein [Bordetella avium 197N]
 gi|115422771|emb|CAJ49299.1| flagellar hook protein [Bordetella avium 197N]
          Length = 406

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 111/476 (23%), Gaps = 75/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +  +    ASQ    I  NI N+    +    T       N  V       + N+  
Sbjct: 2   GFGQGLSGLQAASQNLDVIGNNIANSGTIGFKSGSTSFADVYANSRVGLGVKVAAVNQRF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +                          D  +N       +       +  N     
Sbjct: 62  TAGTVSGTGGEYDIAIDGAKGF-----FRVTDASDNIVYTRSGEFGIDKNFFITNAMGYR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +      +         +     +A        ++++  L+    +  A      
Sbjct: 117 LTGYPVGGIGTNLVPLQVPQANIAPQETNA--------ASIQTNLNANAKIVPAAPAFDP 168

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  D +  L    +     +    +                           +N E +  
Sbjct: 169 ANQDTYTDLVPTTIYDSLGNSHQMVQYF-------------------VKRAPVNGESVYD 209

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T +  P  +DG   SS        G +      RD  +                   
Sbjct: 210 IYYTVDGKPATVDGGQPSSRLT-FNSAGVLTGGQPNRDIEITGL---------------- 252

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                    +            N  +  +    +   +      
Sbjct: 253 ---------------------GSTTSPARDITVRMNYQNVTHFGSDFGPKVTANGYSSGE 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           ++  ++     ++  Y +  ++      +A  N    L     +   W+E   S    + 
Sbjct: 292 FSGISIEKNGTIMAKYTNGESQAVGTIALANFNNVGGLKPVGDS--SWVETGESGQAIMG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +         V + +EL  +I  +++Y  + + I   D++LQ L+  
Sbjct: 350 QPGTNGLATLFGQALEQSNVEMSQELVNMIVAQRTYQANAQTIKTQDEVLQVLINM 405


>gi|167040321|ref|YP_001663306.1| hypothetical protein Teth514_1684 [Thermoanaerobacter sp. X514]
 gi|300914405|ref|ZP_07131721.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561]
 gi|307724359|ref|YP_003904110.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513]
 gi|166854561|gb|ABY92970.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter sp. X514]
 gi|300889340|gb|EFK84486.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561]
 gi|307581420|gb|ADN54819.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513]
          Length = 417

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/478 (10%), Positives = 111/478 (23%), Gaps = 61/478 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                         +
Sbjct: 1   MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFK----------------EI 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F + +   S+  G           +  +       ++        R        N ++  
Sbjct: 45  FSQTIKGASAPQG---NGGGTNPQQIGLGVAIASIDTLFTRGGAQRTD------NPTDLS 95

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +         +   N  T A       +  D         L    ++   VN        
Sbjct: 96  IDGNGFFIVSKGGANLYTRAGNFS-FDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVP 154

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                   +D       +I   I  ST +       +   D                  +
Sbjct: 155 ISLKNWSSIDPAATTQLEIGGNINASTEINGAISYNILVYDSQGGSHIATITFTKNDATT 214

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +  +  S+   I  V  S           +                              
Sbjct: 215 WNWSVSSSDPAISSVDGSGTLTFGADGRIL------------------------------ 244

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P A       G    +    + +     +S  +     + S           ++   
Sbjct: 245 ---PDANGVRIANGTLNFNMNTAVTSATIGPVSLDLSRLTMFSSETDLRELSKDGNEAGS 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 302 LESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 359

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 360 AAGTDTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVNIKR 417


>gi|217972604|ref|YP_002357355.1| flagellar hook-associated protein FlgK [Shewanella baltica OS223]
 gi|217497739|gb|ACK45932.1| flagellar hook-associated protein FlgK [Shewanella baltica OS223]
          Length = 641

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 120/439 (27%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    +                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVND 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQ--IGKVVPQSLNNLFSGLNSI 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + + NA++V  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELAKLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I + N    +       L       
Sbjct: 182 LELMKSP---NQDAQLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               +  +           I    V+ +   +   G++ A+   RD  +    ++LD++A
Sbjct: 239 SMGTQAGNPFPKELQLNSSISSQSVTVDP--SKLGGQLGAMFDYRDQTLIPAGHELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    L               S  +     
Sbjct: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLG---------RAAGFSGNTGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +  +        +        
Sbjct: 348 GVTVDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSGFSIDIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S        +    N I 
Sbjct: 408 ASGDRFAIRPTAGASNGIE 426



 Score = 99.7 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 99/364 (27%), Gaps = 4/364 (1%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +    G  +   A  V  NFN    +   +       I  +I++    L      +  
Sbjct: 282 DQTLIPAGHELDQLALGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRAAGFSGN 341

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T         L          +              +   T  G+TL       I+
Sbjct: 342 TGNATLGVTVDDTSLLTGGAYELSFTSPATYELRDTETGTITPLTLTGSTLSGGSGFSID 401

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     +    +      G           PKG   A  +I          Q+      
Sbjct: 402 IKAGAMASGDRFAIRPTA-GASNGIEVVMKDPKGIAAASPKITADAANSGNTQVKLTQIG 460

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +     +  +  +    +    +  D       + T    P   +         +
Sbjct: 461 NRNAANFPVTGSELTIKLDTTVVPPTYEAFDAAGTSLGAATTYTPPSISAFGFTFEVDST 520

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +     N +             ++     + +     N   TL +   N+   +     
Sbjct: 521 AAA---GNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLDIGSKTK 577

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ V+        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL
Sbjct: 578 AAEVRTGSAEAVYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLL 637

Query: 477 EGVK 480
             V+
Sbjct: 638 SSVR 641


>gi|78047586|ref|YP_363761.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036016|emb|CAJ23707.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 407

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/476 (8%), Positives = 106/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVWSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +             +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       ++      +    + +      AL    + ++                   
Sbjct: 208 KTANPNEWQVYNYVDGAAVGAPTTLQFSDTGALTTPANGIIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                             D            +   +  + QY    +             
Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVTGSTQYGEAFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I         V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|119899027|ref|YP_934240.1| FlgE protein [Azoarcus sp. BH72]
 gi|119671440|emb|CAL95353.1| FlgE protein [Azoarcus sp. BH72]
          Length = 445

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/485 (9%), Positives = 124/485 (25%), Gaps = 54/485 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------- 54
            F +  +  N++S+    I  N+ NA    +   +T+      +                
Sbjct: 2   AFQQGLSGLNSSSKALDVISNNVANASTVGFKASNTIFADMYASAMTGGTSSLQVGIGSK 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +  ++     L A ++ +        F  L           +       +        
Sbjct: 62  VAAVTQSFTQGNLTATNNPLDMAINGNGFFRL------SRSDGSIAYSRNGQFDVDRNGN 115

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N + + L                   + +           E  +  +      +    
Sbjct: 116 IVNATGEKLTGF----------------QALDTSGTQTVFSGEPSVIYIDTT--NIAPRE 157

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +   +      ++ +   I+  +  + I   +                    
Sbjct: 158 TGTASVGVNLDSSEKNPLNKNPVGSDINNFLNYTAIPVESY----------------NYT 201

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +    +S    S  N  F+    V+    +        +   + D   P          
Sbjct: 202 TSMTVYDSLGNASLMNLYFVRDPDVAGVSPNTWTVYGRLSNDVVPDPADPALSTGAPLEN 261

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-FLRD 353
              I   +   P +  + N        G +          +  +  + Q+ ++       
Sbjct: 262 LGTITFTNLGVPDSTIAGNGVFNVTRTGAQLGTGADDLNFTLDLSRSTQWNTDSGVTTSP 321

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                        +++    +   + +   ++     +A  ++   L     N   W E 
Sbjct: 322 RQDGYTTGRLTGLSVSNTGVVQGTFSNGQVRDIARLALANFSSPQGLTSLGDNL--WAES 379

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S    +      V   ++        V+L +EL  +I  +++Y  + + I   D++LQ
Sbjct: 380 FESGQPTVGAPGTGVLGSVTAGQIEESNVDLTQELVSMIVQQRNYQANAQSIRTQDQILQ 439

Query: 474 TLLEG 478
           TL+  
Sbjct: 440 TLVNL 444


>gi|317012896|gb|ADU83504.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           Lithuania75]
          Length = 606

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+  LL   +
Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVITAIDRMIDALLGIKQ 606


>gi|239907786|ref|YP_002954527.1| flagellar hook-associated protein 1 [Desulfovibrio magneticus RS-1]
 gi|239797652|dbj|BAH76641.1| flagellar hook-associated protein 1 [Desulfovibrio magneticus RS-1]
          Length = 710

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/463 (12%), Positives = 124/463 (26%), Gaps = 25/463 (5%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN 49
           MS + ++ +                  NI N D + Y R+  +                 
Sbjct: 1   MSGITSLLSMGAGALRANQAALQVTGNNISNVDTEGYSRQSVVLKDGQYVNTFTGQVGTG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V        +    +       SA  + + L +     + +  ++   +     +S   D
Sbjct: 61  VVAQEVVRAHDKFVEAQYLTKVSARDRYQTLYNGLQSVQNL-VNESNTDGLNTSLSTFFD 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                + N     + +T++D+ E ++    + A  ++++   AD+ I   +  L     +
Sbjct: 120 DWGDLTTNPESAAVRQTLVDDTETLLSTLRSEADSMRQLEDQADQSIAAGVDKLNELAKD 179

Query: 170 LTVVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +  +N+ I         + ++  D RDV L++++ ++ I+ I     D+ VYT+ G T+ 
Sbjct: 180 IADLNNQINQTQIDGKSNPNNLYDLRDVKLREMAGLVDINVIDNGKGDITVYTTAGQTVV 239

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           + V     F+       T         G  VS  Q         +  L++          
Sbjct: 240 DGVVA---FDFKFEQGQTVRQLSPTSLGPPVSDVQAYYDGADNDEYTLKVVSGGAVGGGA 296

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                        +  D      +                       +T   +     + 
Sbjct: 297 AFQVSLDGGRTWLTNDDGTTAVYQAEAEGSKVRVGDLDIWFANVDDPDTPAADNLNVGDT 356

Query: 349 SF------LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                   L    +         +  A   D                    +      L+
Sbjct: 357 FTLVPKKALYWYTTAGTAENITPQQYADGTDNTRRLTGGALAGAFLFRDEELGEFQDTLD 416

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
               S+ W                 V      +  +   V L 
Sbjct: 417 AFAKSMVWEVNRIHSQGAGLTNFSTVLGT---NAVSLTNVALD 456



 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 98/376 (26%), Gaps = 9/376 (2%)

Query: 111 LESYSKNLSEDILGKTVIDNAEEV----VQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             +   +          + +   +       + T+A   + I      +       L   
Sbjct: 336 WFANVDDPDTPAADNLNVGDTFTLVPKKALYWYTTAGTAENITPQQYADGTDNTRRLTGG 395

Query: 167 LSELTVVNDAIKFKT---ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                 +    +           A   + + + +  + + +   ST++  N   +   + 
Sbjct: 396 ALAGAFLFRDEELGEFQDTLDAFAKSMVWEVNRIHSQGAGLTNFSTVLGTNAVSLTNVAL 455

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
            +        D              +  + +DG         A   G     L    + +
Sbjct: 456 DSRSSGLDFGDRLQSGAFMLYAYDANGNLAVDGSGNPVQASIAFTPGV--TTLDDLVTAI 513

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               +        L  S S               F  D    L              +  
Sbjct: 514 DNAFSPPAFSDTYLDASISNNRLSISGVNGRTFQFGDDSSGVLAALGVNTFLTGSRASDV 573

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++          +     +     G         +  N    F        N TL + 
Sbjct: 574 AVNDVVGTDLNRINAGHVGADGLVAVGDNLTAKAMTELENTAISFYVAGKTTVNQTLTDN 633

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             + +  +  + + +         +   ++E   +T GVNL EEL+ +IK + SY  + K
Sbjct: 634 YASLVSKIGSDTAAASYQATYQAALAAELNEQQLSTSGVNLDEELTNMIKFQHSYQAAAK 693

Query: 464 LIMFTDKMLQTLLEGV 479
           L+   + M +T+L   
Sbjct: 694 LVSTANSMFETVLGLK 709


>gi|308183223|ref|YP_003927350.1| flagellar hook-associated protein FlgK [Helicobacter pylori PeCan4]
 gi|308065408|gb|ADO07300.1| flagellar hook-associated protein FlgK [Helicobacter pylori PeCan4]
          Length = 606

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIAKKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAK 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|238796904|ref|ZP_04640408.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC
           43969]
 gi|238719164|gb|EEQ10976.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC
           43969]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/476 (9%), Positives = 106/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++  +  N ASQ    +  NI N+    +               V       S N+N 
Sbjct: 2   GFSQGLSGLNAASQALDVVGNNIANSQTVGFKSGSIAFADVFAGSQVGMGVQVSSVNQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D VL + +S++        F  L                   + +     +  N     
Sbjct: 62  SDGVLGSGASSLDMGIQGNGFFRLTN------EAGRVFYSRNGQFKQDENGFIINNQGMF 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                             +       I+  + 
Sbjct: 116 LTGYQASGTPP---------------------------------AIQPGAAVGPIQIPSG 142

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                          L   +E++  +      ++    +      ++++           
Sbjct: 143 QMPARASDGGSLSGNLDSGTEVVDPAIKFDPADNKSYSSVSQVDGYDSLGNRHTINVYYV 202

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +E      D      +                                   +    
Sbjct: 203 KTSDNEWKAYSSDTTSPKLDNNGDP------------------------------VYQEL 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E               ++      +          +    Q  S+ +      +      
Sbjct: 233 ELKFDTSGQLTTKPAKLSVQSAAYNGGEPLDFELDMDGMTQQASDTAMASPTTTGYAPGQ 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   +     +I  Y +   +      ++       L     N   W E   S      
Sbjct: 293 MNGYTVGDNGQIIASYSNGQQQLLGQVVLSNFTNPGGLSSQGDNC--WSETPASGQPVDG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +       ++  +      V+L +E+  +I  +++Y  +++ I    ++LQ L   
Sbjct: 351 IAGTGNLGNLFGNRLEASNVDLSKEMVNMIVYQRNYQSNSQTIKTQSELLQILANL 406


>gi|332703535|ref|ZP_08423623.1| flagellar hook-basal body protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553684|gb|EGJ50728.1| flagellar hook-basal body protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 556

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/563 (7%), Positives = 123/563 (21%), Gaps = 90/563 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49
           M L A              +   I  NI N     +                      + 
Sbjct: 1   MGLSASMFSGVTGLKAHGDKMGVIGNNIANVSTIGFKGARMFFQDVISQDIPTAAGIGQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V+  +   +           A       + F      +    + + S        R 
Sbjct: 61  GRGVSIGAIYADYTQGGFETTGEATDLAIGGKGFF-----IVKKKNEDTSYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAE-----------EVVQNFNTSAREVQKIRADADKEIEL 158
             + Y  + +  +L     + ++                   +  +++     +  +   
Sbjct: 116 DKDGYLVDPNGLVLQGWRAERSDPTAAVSGVTTNTNTVRIVGTPTDIRLNNFQSPPQETT 175

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            ++ +    S      ++      +  +  D   +  +   + S    +     N N   
Sbjct: 176 NVTVISNLDSSEKSRAESTTDPFFAMFEVWDGTQETPLTEAQYSYQATVKVFDANGNAHD 235

Query: 219 VYTSDGTTLFET------VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           +                     +  +      + S    +  +    S+     +     
Sbjct: 236 LTVYYDQVTLSNSGGRKVWEYMVTSKPTEDGRIFSNGGGVLTNARDTSAAGVLMIGTLSF 295

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD----------- 321
            +  ++ +      Q   +          +  +    +    P                 
Sbjct: 296 NSSGELENQTAFTLQAGFNPAVPGDFKDLTNWELADFSQSGYPTFTANFLGEENASATDA 355

Query: 322 ------------------------------GIKDLDNKLCQGISETICVNPQYRSN---- 347
                                              +  L       I   P+++ +    
Sbjct: 356 LNPSLIELNLGLRNGNLSATGWSAVTDAQTMSTTFNTGLVNPTGTDIAGLPKFQGSELQA 415

Query: 348 ----------PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                      S L          L     +     L   Y +          +A  N  
Sbjct: 416 TATTSYAEKGSSTLFQAQDGYAAGLLLGVAVDSDGILSGRYSNGQILELFAITLADFNNP 475

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L     N   +++   S     +  ++     I+ +      V++ +E   +I  ++ 
Sbjct: 476 WGLRREGGNL--FMDTRDSGGAITNQANRGGKGSIASNSIEQSNVDMADEFVQMITTQRG 533

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  + K+I   D +L  ++   +
Sbjct: 534 FQANGKVITTVDTLLGEVINLKR 556


>gi|332704817|ref|ZP_08424905.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554966|gb|EGJ52010.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 725

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 128/410 (31%), Gaps = 21/410 (5%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PEN 49
           MS +  + + A+     +        +NI N +   Y RR      S             
Sbjct: 1   MSGINNIMDIARKGLFASQAAIEVTGQNISNVNTVGYSRRYVRLEESLQLDYRPGQIGMG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V             +      S+   +   L       + +  +       + Y+S+   
Sbjct: 61  VEAAEVLRHFDRFIETNYLDKSTMQQRYDTLFGSLKSVDSLLYESEKVGGISSYLSQFFG 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +  +       + +T++ +   ++   + +  ++ +++  A++ I+ ++ ++ R L +
Sbjct: 121 DWQKLTSETDNYAVRETLLSDTNNLLSVIHQADAQMTRMQEQANQFIQQDVDDVNRILEK 180

Query: 170 LTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTTL 227
           +  +N  +K       ++A+   D RD L+++++  + I+ I R N  D  + T  G TL
Sbjct: 181 IAGINGQLKQVEIPGQNNANALRDDRDRLVRELAGKLDINVITRGNEQDFTITTKAGHTL 240

Query: 228 FETVPRDINFEKMNSYTVTSESNP-------IFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            +         +    T +  +         ++ DG+         V  G   +      
Sbjct: 241 LQNEQTFSLKFEGPRVTSSLVAGSTFGADGKLYFDGMDDFEYTIDFVSAGTAGSEYSGDP 300

Query: 281 SVVPIFQNQLDEMARVLIGSFS-EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +   +F+  LD     L      E    AG+  ++  +                 S    
Sbjct: 301 TTAAMFRVSLDGGKTWLKDDNGVELQFPAGDEAHLVEVRGVKIWFGQQGSSTTPPSNGPE 360

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           V   +   P         +         +    +  N      +    F+
Sbjct: 361 VGDDFIVAPKSGVYWYQDTSTSENITPQIYANGEDNNRRITGGSLAGFFN 410



 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 1/281 (0%)

Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
           +K+SE  G   +  +   +   TS      +    ++ F   ++      +  +      
Sbjct: 445 KKLSEATGTYQVFDSTVPLANDTSGLFFRDKLQSGNLQFYAYDNTGAMVGTQSLDFTAYS 504

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
                 +     +  +L  +RD+   +F +    +   +  S         +       F
Sbjct: 505 SKIPPDANF-DPEDNSLEDVRDAFNDMFASMGLAVPADMQASIVNGSLRIASGNGHTFGF 563

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
             D    L                   ++          +  +    +   G   + +  
Sbjct: 564 GQDSTGLLAGLGINTYFSGTSARSIEINSAVASNTSLINAGHYNGAGEINEGDNLIASDI 623

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
               +K        G   + TL E+    +  +  + S +         +   +     +
Sbjct: 624 AALKDKKLDIHTDFGGTAHQTLSEFYNALVSSVGGDTSSAQFNFSYQNSLAQDLDAQQQS 683

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             GVNL EE+S LIK + SY  + KLI   D+MLQTLL   
Sbjct: 684 LSGVNLDEEMSNLIKFQHSYTAAAKLISTADQMLQTLLGLK 724


>gi|323699248|ref|ZP_08111160.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132]
 gi|323459180|gb|EGB15045.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans
           ND132]
          Length = 541

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/549 (12%), Positives = 129/549 (23%), Gaps = 77/549 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS               SQ  + +  N+ N +   Y R D +                  
Sbjct: 1   MS-FGSMYVGATGVIAHSQGMSVLANNLANVNTIGYKRSDILFGDLISQQVATGGALYDN 59

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   R       +  L   + A       Q F  + +   +      
Sbjct: 60  GDVRINQMGMGVAVSAIRGI---FTEGALSETTEATDLAISGQGFFGVNDP--SGTIRGA 114

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE--------------VVQNFNTSARE 144
           S        R   E+Y  N     L     D                   V     +AR 
Sbjct: 115 SHYTRAGDFRFDNEAYLVNSEGYRLQGFAYDRETGEWATAVSDVQLPYEDVDVDGQTARV 174

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           V+           +   +           N       A   +  +        L + S  
Sbjct: 175 VRSQPFATTSVEVVTRLDHSAASQISNEDNPFFAMLEAYTANQSNAASPFGDGLPQYSTA 234

Query: 205 IGISTIVRNNNDMVVYTSDGTT------------------LFETVPRDINFEKMNSYTVT 246
           I +     N+ +M +Y     T                  + E       F    +    
Sbjct: 235 IDVYDEDGNSYEMNIYFDPVETTNLSNAVPGYSYWEYLIAMPEDSDASAAFGTSAAGLAG 294

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                    G ++  +  +  P G   A      S VP   +         +   +    
Sbjct: 295 LGVLTFNAQGALIDQSAFTLDPAGTSAAGGTSLSSWVPATFSDDGLPQFNYLFGSNGAAT 354

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF---------------L 351
              ++        +D             +    VN     + +                L
Sbjct: 355 GGVSTIAYDFGINSDTASWTTGGASNAAAVGTNVNALPGLDATNRDARVTTSYDLPSATL 414

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            +          N  ++     L  H+ +   +      V   N+   L         ++
Sbjct: 415 YNIQDGYTWGYLNYVSVDEEGILSGHFTNGQTEELYQVAVYKFNSPWGLRR--DGGTNFV 472

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S +  +          I+++      V++  E S +I  ++ Y  + K+I   D M
Sbjct: 473 ATEASGTAMVGTAGDRGRGIINQNSLEESNVDMSTEFSNMILTQRGYQANTKVITTADSM 532

Query: 472 LQTLLEGVK 480
           L TL+   +
Sbjct: 533 LNTLISIKR 541


>gi|307637788|gb|ADN80238.1| Flagellar hook-associated protein [Helicobacter pylori 908]
 gi|325996386|gb|ADZ51791.1| Flagellar hook-associated protein [Helicobacter pylori 2018]
 gi|325997974|gb|ADZ50182.1| Flagellar hook-associated protein [Helicobacter pylori 2017]
          Length = 606

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNMNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    Q +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|217032694|ref|ZP_03438180.1| hypothetical protein HPB128_202g28 [Helicobacter pylori B128]
 gi|298735878|ref|YP_003728403.1| flagellar hook-associated protein 1 FlgK [Helicobacter pylori B8]
 gi|216945624|gb|EEC24275.1| hypothetical protein HPB128_202g28 [Helicobacter pylori B128]
 gi|298355067|emb|CBI65939.1| flagellar hook-associated protein 1 FlgK [Helicobacter pylori B8]
          Length = 606

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606


>gi|313681828|ref|YP_004059566.1| flagellar hook-associated protein flgk [Sulfuricurvum kujiense DSM
           16994]
 gi|313154688|gb|ADR33366.1| flagellar hook-associated protein FlgK [Sulfuricurvum kujiense DSM
           16994]
          Length = 615

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 123/405 (30%), Gaps = 35/405 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
           S+    +   +  N A     +   NI NA+ + Y R+  +T  +               
Sbjct: 3   SIFNALHIGYSGLNAAQIGIDTTGHNISNAETEGYTRQRVVTAAAAPLGVDPGQRGGGTQ 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V        +         +        L+            +         +    D  
Sbjct: 63  VTDITRIFDSFVYARYTTAAQNKEYSDTLKKNLEELSTYF-PEIDKVGIKDDLQSYYDMW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +S + N S   L   +    + + Q+   +  ++  ++   + ++++ + ++ R   ++ 
Sbjct: 122 QSLANNPSNTSLKVALAQQTQTLTQHIQQTRSQISTLQNSLNDQVKVNVDDINRIGQQIA 181

Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD------G 224
            +N  I    +   + A+D  D+R+ L   +S++I     V N     V  S+      G
Sbjct: 182 DLNLEIDKAESGGLNHANDLRDKRNQLELSLSKLIDAKVFVGNTKTNNVIDSNIAEKEGG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESN------PIFIDGVVVSSNQGSAVPKGKIKALLQI 278
             +       ++    +   + S SN        +     V     + V  GK+ ALL++
Sbjct: 242 YVIQVAGFNLVDGGSFHPIGIDSTSNKNGYNDLYYERQDGVRFPFANTVTGGKLGALLEL 301

Query: 279 R-----------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           R           D  +    N LD  A+ LI S +        +     +      + + 
Sbjct: 302 RGSTIGTNGEFEDGFLQETINNLDSFAQGLIESTNNIYAQTATTSMQSNILNFSDNQSIL 361

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
           +      + T  +           R   S+    L N        
Sbjct: 362 STDENFKAGTFDLIVYDIDGNEVGRRSISIDNGTLINDTPQTSNS 406



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/447 (11%), Positives = 118/447 (26%), Gaps = 17/447 (3%)

Query: 50  VTVVTQRSENKNMFDKVL---HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
           V V       + + D  L    A S  +     L+      E+  +              
Sbjct: 168 VNVDDINRIGQQIADLNLEIDKAESGGLNHANDLRDKRNQLELSLSKLIDAKVFVGNTKT 227

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-AREVQKIRADADKEIELEISNLRR 165
                 + ++     ++     +  +    +     +   +    D   E +  +     
Sbjct: 228 NNVIDSNIAEKEGGYVIQVAGFNLVDGGSFHPIGIDSTSNKNGYNDLYYERQDGVRFPFA 287

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG---ISTIVRNNNDMVVYTS 222
                  +   ++ + ++     +F D          +      I +           + 
Sbjct: 288 NTVTGGKLGALLELRGSTIGTNGEFEDGFLQETINNLDSFAQGLIESTNNIYAQTATTSM 347

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
               L  +  + I     N    T +     IDG  V     S      I    Q  +S+
Sbjct: 348 QSNILNFSDNQSILSTDENFKAGTFDLIVYDIDGNEVGRRSISIDNGTLINDTPQTSNSI 407

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V       D+       +  +   +   +       I              I +      
Sbjct: 408 VGQINISQDDNNDNNSLNDIDDMLVGTFNNQQNIFQINIKAAFEAQGYSFAIEDHGTNFA 467

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT------ 396
                  F     + S     ++++            +  N+  +        +      
Sbjct: 468 GVTGVNRFFDGNDAKSIALNGDLQHDMSKIKGFKSPANGDNQTALDMVQQQFASVTFGIG 527

Query: 397 ----NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 T+  Y  N +  +    + +   +      FN I +   +   V++ EE++ LI
Sbjct: 528 RSKSTDTIYGYFDNLVTRVGTRTNSAIVSNDSITAQFNSIKQEQDSISKVSIDEEMANLI 587

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + + SY  + K+I   D+M+ TLL   
Sbjct: 588 RYQTSYGAAAKVITTIDQMMTTLLGIK 614


>gi|285018203|ref|YP_003375914.1| flagellar hook-associated protein 1 (hap1) [Xanthomonas albilineans
           GPE PC73]
 gi|283473421|emb|CBA15926.1| probable flagellar hook-associated protein 1 (hap1) [Xanthomonas
           albilineans]
          Length = 624

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 122/404 (30%), Gaps = 16/404 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           +V +          +   ++  N+ NA+   Y R+      +               +  
Sbjct: 2   SVMSTGTGALLAFQRALQTVSHNVANANTNGYSRQRASFATNVPNQFGNYYVGNGTHISD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L   +    + + L    +  + + +D           S   D+  S 
Sbjct: 62  ISRVADQLAISRLFDSTGEAARLKQLSDMSSRVDSVFSD--KATGIAGPWSNFFDATSSL 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S +       + ++D+   +V  F     ++  +  + +  +    +      +E+  +N
Sbjct: 120 SSSAPTTANRQNLLDSGNALVTRFKQLNGQIDSLNNEVNGGLVSGTTEANDLATEIAKIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   + +   + D LD RD L+ ++    G S + ++   M VYT+ G  +       
Sbjct: 180 GQI--GSNATDASPDLLDHRDQLISQLVSYTGGSVVQQDGGMMNVYTAGGQAMVVGTTAS 237

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           +     + Y        +   G   S+   S    GKI   L+ R SV+     +L  +A
Sbjct: 238 VLVTTQDPYQPQRLQIALKTPGG--STPLSSQALGGKIGGYLEFRSSVLDPTTAELGRIA 295

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L  S++++     +     G    +      +                  +    ++ 
Sbjct: 296 TGLASSYNQQHKAGMDLYGQMGGNFFNLPPPTVDGNSANTGNAAFTVNVSDVSKLDGQNL 355

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   W+         +      +    F+ + V+   +  
Sbjct: 356 LLSYNGSTWSASRADTGASVAMTGSGTSADPFVVNGVSLQVSGT 399



 Score = 90.1 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/429 (6%), Positives = 115/429 (26%), Gaps = 8/429 (1%)

Query: 59  NKNMFDKVLH-AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
              +  +++     S + Q   + +               +         +      +  
Sbjct: 197 RDQLISQLVSYTGGSVVQQDGGMMNVYTAGGQAMVVGTTASVLVTTQDPYQPQRLQIALK 256

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                   +      ++       +  +    A+  +      S+  +       +   +
Sbjct: 257 TPGGSTPLSSQALGGKIGGYLEFRSSVLDPTTAELGRIATGLASSYNQQHKAGMDLYGQM 316

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEII-GISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                +        +  +      +  +  +S +   N  +    S  +         + 
Sbjct: 317 GGNFFNLPPPTVDGNSANTGNAAFTVNVSDVSKLDGQNLLLSYNGSTWSASRADTGASVA 376

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                +       N + +     ++     + +    A+  +  ++    +       + 
Sbjct: 377 MTGSGTSADPFVVNGVSLQVSGTAAAGDKFLLQPTANAINNLSVAITDPSRIAAATPIKA 436

Query: 297 LIGSFSEKDP-----IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +   ++         A ++ N   L  ++             +           + +  
Sbjct: 437 TVSLSNQGTGIVSKVQAVDATNANLLTPSNIAFVDATHYTIDGTGPFAYTAGQTISANGW 496

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       +   ++      +   ++   + + D  A     +TL          +
Sbjct: 497 SLTLDGKPS-SGDSFAVSPTGPGSSDNGNAQLLSHLDDAKALNGGTITLNGAVSGLSTTI 555

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +        V+ ++  ++  +  GVNL EE + +++++Q+Y  ++ +I   D M
Sbjct: 556 GSAARQAQYSSDAQNVIQSNAQDARDSLSGVNLDEEAANMLQLQQAYEAASHIISTADTM 615

Query: 472 LQTLLEGVK 480
            Q++L  ++
Sbjct: 616 FQSILSAIR 624


>gi|315125984|ref|YP_004067987.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913]
 gi|315014498|gb|ADT67836.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913]
          Length = 442

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/480 (11%), Positives = 124/480 (25%), Gaps = 43/480 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           MS+   FN   +   +          NI N+    Y                   +  N 
Sbjct: 1   MSM---FNIGLSGLKSTQAGLEVTSNNIANSGTAGYKNNTAEFAAVYNGSQRGGVKVANV 57

Query: 60  --KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               +    +    +A+      Q F A+ E          +      + +   +    N
Sbjct: 58  KEDFVTGGEIVRTGNALDIAIDGQGFFAISEN-------GRTAYTQAGQFQLDNDLNVVN 110

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +   L    +   +    +       +  ++ +A        +N+          N + 
Sbjct: 111 ANGGKLQGFGVSQVDG--GDPTIVPGVLTDLKIEASNIEAQASTNIN------FNGNLSS 162

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +   A    D +D      S+   +   + N++ M  Y     T           
Sbjct: 163 SSDVIAYPTAPAVFDPKDGSQYNFSQSTEVFDSLGNSHVMTQYF--NHTGSNEWQAMFFL 220

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           +          +         +    G ++  G I  L    D  +  F   L  +   +
Sbjct: 221 DGKPLTQGQLSALGATTGTQAIDDGAGGSINAGTI-TLNFDTDGQMVPFSGDLTAVDLEV 279

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                            P        +         I+       Q+ S+ S   +  + 
Sbjct: 280 -----------------PITSTPGNAEITSGAAALNIALKFDGTTQFGSSFSVNENDANG 322

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                ++   +     +   + +  +K      +A       L + +     W +   S 
Sbjct: 323 YTSGAFSGVKVEDDGRVFATFTNGESKLQGQVVLASFANVDGLEQGSNTV--WYQTEESG 380

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S             +         V++ E+L  L+  +Q+Y  + K I   D+M+Q L  
Sbjct: 381 SALYGEPESGSLGKLLSGSFMGSNVDISEQLVGLMSFQQNYQANAKTISSADEMMQILFS 440


>gi|238916755|ref|YP_002930272.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750]
 gi|238872115|gb|ACR71825.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750]
          Length = 464

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 123/478 (25%), Gaps = 37/478 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N +   +  +    +         TQ +   N 
Sbjct: 24  MMRSMYSAVSGLKAHQTRMDVIGNNIANVNTVAFKSQSMTFSEVFYQ---TTQTASGPNA 80

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                  ++  IG    + S         A +  +N+    I      + + + N     
Sbjct: 81  ESGKGGTNAKQIGLGSSVGSISTSISTEGASERTDNAFDLKIGGSAFFIVNSAGNTFFTR 140

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G   +D +  +V +    A  +     +  K ++  +S L     E    +        
Sbjct: 141 AGNFKVDESGALVTS--AGANVMGWQVDETGKAVKDVVSKLYVNSPEFAYTSPQRTSAVN 198

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              + +            I+  +     + N+    V         +     +    ++ 
Sbjct: 199 FTGNINA------SSKDTITTTLNFYDSLGNSFQATVNLDYAGVQGDNTQYTMTCVGVSK 252

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               ++        +  ++  G A        L    D+ +      +D        +  
Sbjct: 253 NGNPTDLTFTASGPLSFNTLTGLADQSNANIQLTFSNDATLAQTNENIDIRTIGESETSP 312

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                              G                            + + G       
Sbjct: 313 VLTLSGSGLTMYADKTSIKGNL-------------------------GIDEVGKGKAVGK 347

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++  Y +   KN     VA  +    L +   N       + S    + 
Sbjct: 348 MTSVGIDNSGYIVASYSNGDTKNIGQIAVATFSNPEGLQKEGENLYSATLNSGS-FDGIG 406

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    IS        V+L  E + +I  ++ Y  ++++I  +D +L+ L+   +
Sbjct: 407 EDVTTSDGSISSGVLEMSNVDLSSEFTNMITTQRGYQANSRIITVSDTLLEELINLKR 464


>gi|289666047|ref|ZP_06487628.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 407

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/476 (8%), Positives = 106/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +             +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFDPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +       +    + +      AL    + ++                   
Sbjct: 208 KTANPNEWQVHNYVDGAAVGAPTTLQFSDTGALTTPANGIIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                             D            +   +  + QY    +             
Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVSGSTQYGEAFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +      +         V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APNTSDLGQVESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|325918877|ref|ZP_08180954.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937]
 gi|325534914|gb|EGD06833.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937]
          Length = 407

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/476 (8%), Positives = 105/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDSNGYVINPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +          A  +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFD-----AGRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFSPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +       +    + +      AL    + V+                   
Sbjct: 208 KTANPNEWQVHNYVDGTAVGAPTTLQFSDTGALTTPANGVIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                             D            +   +    QY    +             
Sbjct: 250 -----------------MDPFTPSTGAGVLNMQLNVSGATQYGEAFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I         V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|91792670|ref|YP_562321.1| flagellar hook-associated protein [Shewanella denitrificans OS217]
 gi|91714672|gb|ABE54598.1| Flagellar hook-associated protein [Shewanella denitrificans OS217]
          Length = 639

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 133/421 (31%), Gaps = 19/421 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M++  + N A+     +  Q      NI NA+ + Y R+      +              
Sbjct: 1   MTI-NLLNIARTGVLASQAQLGVTSNNIANANTEGYHRQVAQQGTTDPQMLGGNYYGTGT 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   +    +   + L        +     +++ + E+              ++ L  S
Sbjct: 60  YVSDVKRIYNDYAARELRI--GQTAKGEAQATYDKVSELDQLYSKVGKIVPESLNGLFAS 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++S +   S+  +  T +++AE++ ++ N     +       + +I    + +     E+
Sbjct: 118 MDSVANTPSDIGIRGTALNSAEQLAKSMNQMQTHLDGQIKQTNSQITAITNRISDISKEI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +     S       LD++D L+Q++SE   ++ I  +     +       L   
Sbjct: 178 GTINLELMK---SGEKDSQLLDRQDQLIQELSEYAQVNVIPLSTGAKSIMLGGSVMLVSG 234

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                    +             +    ++ +  S    GK+ +L    ++ +     +L
Sbjct: 235 EVSMKMGTTVGDPFPNEPRLTTTVGSQSLNVDPSSI--GGKLASLYNFVENTLVPASQEL 292

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-SETICVNPQYRSNPS 349
            ++A  +  +F++      +     G  I   I D      +     T   N + R+N  
Sbjct: 293 GQLALGIADTFNQAQRDGFDLTGQVGGRIFTDINDASMSAGRVGEFSTNTGNAKLRANIE 352

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +      + +  +         D       +   N     + G +     ++    + G
Sbjct: 353 SVSALTGSNYELKYTAPATYELTDEKTGQVQALTLNVGAGRLEGGDGFHIYIDSGAFANG 412

Query: 410 W 410
            
Sbjct: 413 D 413



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/385 (10%), Positives = 102/385 (26%), Gaps = 11/385 (2%)

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
             +S    ++ L + +E+     +   LG+  +  A+   Q          ++      +
Sbjct: 266 DPSSIGGKLASLYNFVENTLV-PASQELGQLALGIADTFNQAQRDGFDLTGQVGGRIFTD 324

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           I     +  R        N       A+             L         ++       
Sbjct: 325 INDASMSAGRVGE--FSTNTGNAKLRANIESVSALTGSNYELKYTAPATYELTDEKTGQV 382

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
             +        L       I  +         +   I  +    +  +        + A 
Sbjct: 383 QALTLNVGAGRLEGGDGFHIYIDSGAF--ANGDRFEIRPNAGAAAGLKTVMTDSKGLAAA 440

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                +      N   +M  V   S +                 +            G++
Sbjct: 441 SANITADAANSGNTQVKMLSVSNRSAANFPVTGQELTFEINTAASTFEAFDATGASLGVT 500

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +            ++   + + +F +++    G         ++     + +      
Sbjct: 501 PYVAPTITAFGFSFEVKSTAAATDRFTFDLSFAPGDNT------NAVAMGKLAETKLMNG 554

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            + TL +    +   +      +      +  V+    +   +  GVNL EE + L+K +
Sbjct: 555 GSSTLNDVFEQTKLSIGGKTKSAAVALGSADAVYQQAYDRVQSESGVNLDEEAANLLKFQ 614

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           Q+Y  S +++    ++  TL   V+
Sbjct: 615 QAYQASARIMTTAQQIFDTLFNSVR 639


>gi|254779670|ref|YP_003057776.1| flagellar hook-associated protein FlgK [Helicobacter pylori B38]
 gi|254001582|emb|CAX29629.1| Flagellar hook-associated protein 1 (HAP 1) (FlgK) [Helicobacter
           pylori B38]
          Length = 606

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|51894131|ref|YP_076822.1| flagellar hook protein [Symbiobacterium thermophilum IAM 14863]
 gi|51857820|dbj|BAD41978.1| flagellar hook protein [Symbiobacterium thermophilum IAM 14863]
          Length = 418

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/475 (9%), Positives = 111/475 (23%), Gaps = 59/475 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
                 +   +   +   I  NI N +   +       T                  F++
Sbjct: 3   SLYSGVSGIRSHQTRMDVIGNNIANVNTTGFKASRVTFTDV----------------FNQ 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            L + S+    Q++          +  D+               ++      + +    +
Sbjct: 47  TLSSGSALTNPQQIGLGVAVGSTDLITDEGA---FQMTGRAFDLAISGAGLFVLKGANDE 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            +   A             +         +  + +  +       T+ +  I   T S  
Sbjct: 104 ILYSRAGMFDW---NPDGILINPALGMKVQGWMAVDGVIGRTDRATMQDIQIVRGTVSLP 160

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A   +  +  L     E     TI+              +L   +P  + F K +  T 
Sbjct: 161 QATTKVTFKGNLDAAAEEDSTYETIINA----------YDSLGRDIPITLRFTKGDGNTW 210

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T +      +G               +       D                         
Sbjct: 211 TVQYWDPETEGWSEEHTLDFGSDGRILGPQGPNDDD-------------------PRLWT 251

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +  +               +                 +    R  GS+   ++  +
Sbjct: 252 ITITDPNDQADDLEITLDFRKITQAYDASGSGGTARSTVELDTRDGRPMGSLEAVYVNEL 311

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             + G     +    +      F+ +AG+               + E   S    +    
Sbjct: 312 GEIIGRYTNGDSQLLAQIALAHFNNMAGLIKEGN--------STFAESPASGVPQIGTAG 363

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +         V+L  + + +I  ++ Y  S +++   D MLQ ++   +
Sbjct: 364 TGGRGTLVPGNLEGSNVDLAGQFTEMILTQRGYQASARVVSTADDMLQEIINLKR 418


>gi|238758110|ref|ZP_04619290.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236]
 gi|238703648|gb|EEP96185.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236]
          Length = 428

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 109/476 (22%), Gaps = 53/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTPTTTNRRLDLAISQNGFFRMQD------SSGGVYFARNGQFKLDENRNIVNMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     VQ+        I  ++   +   S   V N        
Sbjct: 116 LTGYPATGTPP----------TVQQGANPVPLSIPQDMITAKATTSGNMVANLT------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S    I+              +  T F+++    +      
Sbjct: 160 -------------------STHKVITDAFDPQKPDTYSFVNNMTTFDSLGNRHDINVYFV 200

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +               +      +K + +  D   P   +    M     G+  
Sbjct: 201 KTAEDSTGGNTW-------TVYTKDSSATLKDVTKPYDPTDPAAASARGTMVFDTNGALK 253

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P    +                               Q     S      +      
Sbjct: 254 SVTPTGSTTSTTDFNMTIPMGVVNGAPAQTFDLNVAGSKQQNTGTDSITAQNQTGYAAGE 313

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +   +    L     N   W E   S +  L 
Sbjct: 314 FTGFQVNKDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLASQGDNV--WKETQSSGNPILG 371

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 372 TAGGGGFGSLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 427


>gi|15612112|ref|NP_223764.1| flagellar hook-associated protein FlgK [Helicobacter pylori J99]
 gi|4155652|gb|AAD06640.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
           J99]
          Length = 606

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    Q +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|15645733|ref|NP_207910.1| flagellar hook-associated protein FlgK [Helicobacter pylori 26695]
 gi|2314271|gb|AAD08163.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Helicobacter
           pylori 26695]
          Length = 606

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +G++ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGRVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  A+ LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTAGFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 124/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGRVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAK 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++        F+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTAGFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|121601827|ref|YP_989383.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583]
 gi|120614004|gb|ABM44605.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583]
          Length = 404

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/490 (10%), Positives = 119/490 (24%), Gaps = 96/490 (19%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M +  + + + +  N   ++ + I  N+ NA    Y R +   +            P  V
Sbjct: 1   MGIYGMMHTSVSGMNAQGKRLSGIAENVANAGTVGYKRTNVQFSNYVTPSGDYAYVPGGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                   +         A             F  +++         N            
Sbjct: 61  KSHV---GHDISIYGPARATGRPGDAMINGNGFFRVED------ENGNEFLTRAGSFSRD 111

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            + Y +N S   L                   + +Q      D       + +    +  
Sbjct: 112 KDGYLRNSSGHYLLN--------------DEGQRIQIRGGPTDLFGPEVTTGIDFKANFD 157

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
                      +      D  D +                      + VY S G  +   
Sbjct: 158 AS-------AESLGEGVIDPEDPK---------------SYNQKKSVTVYDSQGKKVQVD 195

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                  +   +       N +                                  Q  L
Sbjct: 196 FYMRKTADNKWTVDAYHGDNKV---------------------GTADFNFDKEGNLQAPL 234

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +    L           G+      + I  G    D+ + Q              N   
Sbjct: 235 PDFTLTLPE------NDGGDPPGTFQVAINLGGLGEDSLVTQK------------GNSYA 276

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                +  +   ++        ++   Y +   +   +  +A + +  +L   +     +
Sbjct: 277 FEAEANGMEVGSFDGFTFGKNGEVEVKYTNQKTRVISYVGLATVTSPESLTVLSGTV--F 334

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
               R+ +  +      VF  ++  Y     V + EEL+ +I+ +++Y  ++K+     +
Sbjct: 335 QTNTRTGAQMVGRPGDGVFGSLTAGYLEDSNVEMSEELTDMIESQRNYTANSKVFQTGSE 394

Query: 471 MLQTLLEGVK 480
           ++  ++   +
Sbjct: 395 LMDVIVNLKR 404


>gi|114046844|ref|YP_737394.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-7]
 gi|113888286|gb|ABI42337.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-7]
          Length = 641

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/439 (11%), Positives = 117/439 (26%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    T                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQVFSQ--IGKIVPQSLNDLFSGLNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + +++A+++  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLTQTNDQITGMTKRINEISTELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I   N    +       L       
Sbjct: 182 LELMKSP---NQDAMLLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGAIMLVSGEVPM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                              I    V  +       G++ AL + R+  +     +LD++A
Sbjct: 239 SVSTATGDPFPNELQLMSSIGSQSVRVDPN--KLGGQLGALFEYREQTLVPAGLELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    + +    +           +     
Sbjct: 297 LGVADNFNKLQAQGFDLNGQVGTDIFKDINDPLMSIGRVAGFSGN---------TGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +N          +        
Sbjct: 348 GVNIDDTSALSGGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSIDIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S        +    N I 
Sbjct: 408 ASGDRFAIRPTAGAANGIE 426



 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/363 (9%), Positives = 96/363 (26%), Gaps = 8/363 (2%)

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +   L +  +  A+   +          ++  D  K+I   + ++ R         +A 
Sbjct: 287 PAGLELDQLALGVADNFNKLQAQGFDLNGQVGTDIFKDINDPLMSIGRVAGFSGNTGNAT 346

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                    A            ++S     +  +R+     +                + 
Sbjct: 347 LGVNIDDTSALS------GGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSI 400

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           +       + +   I       +  +        I A             N   ++ ++ 
Sbjct: 401 DIKAGAMASGDRFAIRPTAGAANGIEVVMTDPKGIAAAAPKITPDAANSGNTQVKVTQIT 460

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             S +                      +  +     +   +   P   S   F  +  S 
Sbjct: 461 NRSAANFPTTGSELTIQLDTTAVPPTFEAFDVNGASLGAPVAYTPPSISAFGFTFEVDSS 520

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +            + +  N   ++     + +         TL +    +   +      
Sbjct: 521 AAAAGDKFTFDLSFAEGDN--TNALAMAKLSETKVMNGGKSTLADVFEQTKQDIGSQTKA 578

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +  ++        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL 
Sbjct: 579 AEVRVGAADAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMSTAQQIFDTLLT 638

Query: 478 GVK 480
            V+
Sbjct: 639 SVR 641


>gi|108563482|ref|YP_627798.1| flagellar hook-associated protein FlgK [Helicobacter pylori HPAG1]
 gi|107837255|gb|ABF85124.1| flagellar hook-associated protein 1 [Helicobacter pylori HPAG1]
          Length = 606

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  A+ LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDESFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/400 (13%), Positives = 125/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + +I   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQIYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAK 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDESFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|294635610|ref|ZP_06714087.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685]
 gi|291091062|gb|EFE23623.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685]
          Length = 411

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 116/476 (24%), Gaps = 70/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS Q   I  NI N+    +               V    T  S N++ 
Sbjct: 2   GFSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +      Q F  +++         +       +     + +  N     
Sbjct: 62  KDGTTTTTNRGLDVAISGQGFFRMQD------PNGSVYYTRNGQFSKDAKGFLTNAQGMY 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+       +I   +   +       V+N     K  
Sbjct: 116 LTGYPASGTPP----------TIQQGADPVPIQIPTGLMPAKSTTQGSMVLNLNSANKAI 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               +    ++ D      S     S    +N ++     + TT          +   ++
Sbjct: 166 DSKTSPFDPNKVDTYTYATSMTTYDSLGNVHNMNLYFVKGESTTGAAPETAWHVYAVDSA 225

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T +   +       + N                             +   ++  + +
Sbjct: 226 APATDKPQDVGSLTFDANGN-----------------------LIKGGKQTINMVASNGA 262

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  +                                Q               K   
Sbjct: 263 PAQTFTLDFTGT--------------------------RQQNTGKDGVTSKTQDGYKAGE 296

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A       L+    N   W E  +S    + 
Sbjct: 297 LTGYQINDDGTITGSYTNQQKQLLGQIVMANFAAPEGLVSEGNNV--WSESAKSGQPIVG 354

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   +++        V+L ++L  +I  +++Y  + + I   D++LQTL+  
Sbjct: 355 TSGTSGLGNLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVNL 410


>gi|208435016|ref|YP_002266682.1| flagellar hook-associated protein 1 [Helicobacter pylori G27]
 gi|208432945|gb|ACI27816.1| flagellar hook-associated protein 1 [Helicobacter pylori G27]
          Length = 606

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/484 (12%), Positives = 134/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +      +           +          S           D    S    +    +S 
Sbjct: 63  IEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|113969612|ref|YP_733405.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-4]
 gi|113884296|gb|ABI38348.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-4]
          Length = 641

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/439 (11%), Positives = 117/439 (26%), Gaps = 26/439 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
            + N A+     +  Q      NI NA+   Y R+    T                 V  
Sbjct: 4   DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSD 63

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    +   + L    + +          +  + + +           ++ L   L S 
Sbjct: 64  VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQVFSQ--IGKIVPQSLNDLFSGLNSL 121

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   ++  +  + +++A+++  + N     +       + +I      +    +EL  +N
Sbjct: 122 ADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLTQTNDQITGMTKRINEISTELANLN 181

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +       +     LD++D L+Q++S+   ++ I   N    +       L       
Sbjct: 182 LELMKSP---NQDAMLLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGAIMLVSGEVPM 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                              I    V  +       G++ AL + R+  +     +LD++A
Sbjct: 239 SISTATGDPFPNELQLMSTIGSQSVRVDPT--KLGGQLGALFEYREQTLVPAGLELDQLA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +  +F++      +     G  I   I D    + +    +           +     
Sbjct: 297 LGVADNFNKLQAEGFDLNGQVGADIFKDINDPLMSIGRVAGFSGN---------TGNATL 347

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G                        +  +          +N          +        
Sbjct: 348 GVNIDDTSALSGGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSIDIKAGAM 407

Query: 415 RSDSHDLHMKSQVVFNHIS 433
            S        +    N I 
Sbjct: 408 ASGDRFAIRPTAGAANGIE 426



 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/363 (10%), Positives = 96/363 (26%), Gaps = 8/363 (2%)

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +   L +  +  A+   +          ++ AD  K+I   + ++ R         +A 
Sbjct: 287 PAGLELDQLALGVADNFNKLQAEGFDLNGQVGADIFKDINDPLMSIGRVAGFSGNTGNAT 346

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                    A            ++S     +  +R+     +                + 
Sbjct: 347 LGVNIDDTSALS------GGSYELSFTAPATYELRDTQTGTITPLTLNGTKLEGGAGFSI 400

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           +       + +   I       +  +        I A             N   ++ ++ 
Sbjct: 401 DIKAGAMASGDRFAIRPTAGAANGIEVVMTDPKGIAAAAPKITPDAANSGNTQVKVTQIT 460

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             S +                      +  +     +       P   S   F  +  S 
Sbjct: 461 NRSAANFPTTGSELTIQLNTTAVPPTFEAFDANGTSLGAPAAYTPPSISAFGFTFEVDSS 520

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +            + +  N   ++     + +         TL +    +   +      
Sbjct: 521 AAAAGDKFTFDLSFSEGDN--TNALAMAKLSETKVMNGGKSTLADVFEQTKQDIGSQTKA 578

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +  ++        +  GVNL EE + L++ +Q+Y  S +++    ++  TLL 
Sbjct: 579 AEVRVGAADAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMSTAQQIFDTLLT 638

Query: 478 GVK 480
            V+
Sbjct: 639 SVR 641


>gi|317014505|gb|ADU81941.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           Gambia94/24]
          Length = 606

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    Q +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKQSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|194365680|ref|YP_002028290.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia R551-3]
 gi|194348484|gb|ACF51607.1| flagellar basal body FlaE domain protein [Stenotrophomonas
           maltophilia R551-3]
          Length = 407

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+   +    N+ N +   +                   ++   +    
Sbjct: 2   GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61

Query: 66  VLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A     G   Q           E     +             +     Y  N     
Sbjct: 62  SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDPSGYVINPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     +              ++                                     
Sbjct: 122 LQVFAPNADGTNFDAGRMVDLQLL------------------------------------ 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D   ++ SE+    T+  N     V T D T               +S
Sbjct: 146 ----------TTDSAPKQTSEVKVGFTLPANAKQPTVTTFDPTDSNSYNHSSGGITVYDS 195

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V+      F+ G   +         G+                            +  
Sbjct: 196 LGVSHIQVSYFVKGANPNEWTVRNYVDGQPAG-----------------------APTPV 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     +    G                 ++  +  + QY    +             
Sbjct: 233 TFDNSGKLTAPANGKVSLGTFTPTTGAGVLNMTLDVSGSTQYGEKFALRNTQQDGYAAGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   ++    +   Y +  +K      +   N    L     N   W++   S +    
Sbjct: 293 LNEITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNL--WVDTFSSGTPRTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           M        I         V+L E+L  +I  ++++  + ++I   D++ QT++  
Sbjct: 351 MPDTSNLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVINI 406


>gi|84514827|ref|ZP_01002190.1| FlgK flagellar hook-associated protein 1 [Loktanella vestfoldensis
           SKA53]
 gi|84510986|gb|EAQ07440.1| FlgK flagellar hook-associated protein 1 [Loktanella vestfoldensis
           SKA53]
          Length = 1421

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 125/410 (30%), Gaps = 22/410 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           + ++ +  ++      +      +NI NA+ + Y RRD                 + +  
Sbjct: 1   MASLLDIGRSAVQAQREALNVTGQNIVNANTEGYRRRDATLTEVYGIQSELTGLSSQTGL 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V +   R        +   + ++               E +      +      ++   
Sbjct: 61  GVKLGEIRRAYDGFLTESKRSATARFEASDAFVGKLEQLENLIL--PNDGDLGVVMTAFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           D+L   + +  +    +  ++  E V   FNT+A  +  +     +EI +E+ ++ R L 
Sbjct: 119 DNLTQVAASPGDPAPREAALEMGETVANAFNTTAGMLTSLMNGTAEEIGVELVDVNRTLQ 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L ++N  ++         H+ LD+RD LL  ++E I ++  +    D  +    G +  
Sbjct: 179 SLGIINGQLRSSNIGSAPPHNLLDERDRLLDSLAEKIPVNIKIGERLDAELRL--GASDS 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             +       K  S       + +F  G   S    S +  G ++ L+           +
Sbjct: 237 GPLILTGEDAKKLSVVEGESGSIMFRVG---SGQIVSQLETGGLRGLVDAH-GTNRRALS 292

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +LD +AR      +++     + +   G  +   +            +            
Sbjct: 293 ELDALARDFSQKLNDQHAQGIDLDGQLGRELFAVVDFSVTAGASNQGDAQATIRLVPGLA 352

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
             L              +        +     S   +     V G   + 
Sbjct: 353 DRLGALQMTFDGRRGQWQLTDDTGARLGAGRASLEIDGAVILVEGTPKDG 402



 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/415 (10%), Positives = 116/415 (27%), Gaps = 17/415 (4%)

Query: 69   AHSSAIGQQRLLQSFEALKEMMSADDHYNNS-----PTHYISKLRDSLESYSKNLSEDIL 123
              S+         +   +   ++A D              + K  +            + 
Sbjct: 1014 GASARFVLAGAEYTLTRVDNRLTALDFEMTGPEAGRILPRVIKTNEGFSLSLIVADGQLA 1073

Query: 124  GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            G       +   + F  S  ++ +       +       +   +  +          T  
Sbjct: 1074 GAGPRPVTDSGAEAFGLSDTQLTQSLQGRSFDATDGTYQINVTVGGVAK--------TVI 1125

Query: 184  KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                   L Q D    ++S  + I+        + + ++ G  +  +V       K+ + 
Sbjct: 1126 LQAKDGKLTQSDPKPDELS--VDITGGDDEPTSITLTSALGLAVTPSVDAAALGFKLANA 1183

Query: 244  TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
             ++ E+  +       +     A         L + D         +       + +  +
Sbjct: 1184 ELSVENGRLLARSTDETVVDIKARGTSAAGIYLHLDDLPDEELIVVMGSDGARRLSAEFK 1243

Query: 304  KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN--PSFLRDGGSVSKKF 361
                       P  F  + + D   ++      +        S+    F   G ++    
Sbjct: 1244 IGEPLTAKTRGPEQFRIEMMDDASGRVELFDMVSGASIATRMSSGLARFNVTGQTLELAG 1303

Query: 362  LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
              +  +   +        DS N + +       +   T  +  R+    +  +       
Sbjct: 1304 FADTGDSFQFATGQRSSGDSRNLDELIKLGEQGSGRRTFQDNFRSIAAGVGSSLEAGRLT 1363

Query: 422  HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               ++ V +    S S   GVNL EE + L+  +Q+Y  + +++    ++  TL+
Sbjct: 1364 RASNEAVRDAAVASESELSGVNLDEEAAKLMAQQQAYQAAARILQTARELFDTLI 1418


>gi|21231397|ref|NP_637314.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768550|ref|YP_243312.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991641|ref|YP_001903651.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113063|gb|AAM41238.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573882|gb|AAY49292.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733401|emb|CAP51602.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 407

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 103/476 (21%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E   A               +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +         S  ++                                     
Sbjct: 122 LQVFAPNPSGNGFDVGRLSDLQLL------------------------------------ 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D   +  S +    T+  N +   V   +                 +S
Sbjct: 146 ----------TTDSPPKSTSTVNLAFTLPGNASAPTVTPFNPADDKTYSHSTGGINVYDS 195

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V+      F+     +  Q      G                             +  
Sbjct: 196 LGVSHVQTSYFVKTANPNEWQVHNYVDGSAVG-----------------------APTTL 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +       +    G+   D            +   +  + QY    +             
Sbjct: 233 QFSDTGSLTTPANGIVAMDPFTPSTGAGVLSMQLNVSGSTQYGEAFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      +        L     N   W E   S +  + 
Sbjct: 293 LNEISIDTSGVVFARYSNGADKALGQVALNSFVNPQGLQSQGNNM--WAESYTSGAARVG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I         V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|301644994|ref|ZP_07244960.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1]
 gi|301076723|gb|EFK91529.1| flagellar hook-associated protein FlgK [Escherichia coli MS 146-1]
          Length = 293

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 101/289 (34%), Gaps = 14/289 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                     +S   +  +                 +  G +  +L  R
Sbjct: 239 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 287


>gi|317121822|ref|YP_004101825.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591802|gb|ADU51098.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM
           12885]
          Length = 406

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/478 (8%), Positives = 107/478 (22%), Gaps = 72/478 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +   N   +   I  NI N +   +                   R   K +
Sbjct: 1   MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGFKSS----------------RVTFKEL 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F++ L   ++  G  R               +         ++ +    +    N     
Sbjct: 45  FNQTLRGAAAPAGPTR------------GGTNPIQIGLGTALAGIDVIHQ--PGNPQVTG 90

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   +    +      + +         D   +    + N              +     
Sbjct: 91  VATDLAIQGDGFFVLQDAAGGYAYTRAGDFRLDAAGYLVNADGLRVLGWQAQGGVLPARD 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +                           +      V                       +
Sbjct: 151 A-------------------------VNLGPIRVPVDMFVPAQASSRVTWSSNLDATTPT 185

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  + +  ++       +   +    G  +   Q  D+  P        +     G  +
Sbjct: 186 NTPLTRAVDVYDSLGNAHTLIFTFTRTGSNQWSWQAEDAANPGTSLGQGTLTFGNSGLLT 245

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +                            +        QY + PS L           
Sbjct: 246 AGNTGTV-------------SFTPTGAATINLQVDFSGLTQYAA-PSTLEGTADGYPAGE 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   + +   +      +A       L    R+   + E N S    + 
Sbjct: 292 LTSFAIDTSGTITGTFSNGTTQPIAQVALASFANPAGL---LRDGNLYWESNNSGVARIG 348

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +        ++        V+L  E   +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 349 VAGTGGRGALTPGALEMSNVDLSREFVDMIVTQRGFQANSRVITTSDEMLQELVNLKR 406


>gi|152980177|ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacterium sp. Marseille]
 gi|151280254|gb|ABR88664.1| FlgE flagellar hook protein [Janthinobacterium sp. Marseille]
          Length = 416

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/473 (12%), Positives = 126/473 (26%), Gaps = 59/473 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+   +I  N+ N+    + +          +                
Sbjct: 2   SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYAS---------------- 45

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S   Q  +      + ++ S  +   ++    ++   D     S        G+
Sbjct: 46  --TLSGSGAAQIGIGVQVARVAQLFSQGNIAVSNNPLDMAINGDGFFRMSS-GGSITYGR 102

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  +     N S   +    ADA+  ++           EL +    +     +K+
Sbjct: 103 NGQFELTKEGYIQNASGARLTGYMADANGVVQ------NGAPVELVINKADMGPAATTKY 156

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D    LD R  +L  +      +    ++  + VY S G +               S   
Sbjct: 157 DVKLTLDSRKDVLDPLLFNPDDAATFSDSTSVPVYDSLGNSHILRTFYVKTAGGEWSVFA 216

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T++  PI     V ++N    +                                   +  
Sbjct: 217 TNDGVPIGYTLPVTATNPPVPLG--------------------------------VMDFG 244

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                    P   +A             I+  +    Q+       ++     +      
Sbjct: 245 TGGALVSTTPSPMVAAMAVTTGAATPFNITLNVAGTQQFAQAFGVSKNLPDGYRPGTLTG 304

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++A    ++  Y +          ++       L     N   W+E   S         
Sbjct: 305 FDVASDGSIMGRYSNGEVNVLGQVILSSFANPNGLQNIGDNQ--WVETAESGVPLTSTPG 362

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  +      V+L  EL  +I  ++ Y  + + I   D+++QTL+  
Sbjct: 363 SSGLGVVQSARIEESNVDLTAELVNMITAQRVYQANAQTIKTQDQIMQTLVNL 415


>gi|317152080|ref|YP_004120128.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942331|gb|ADU61382.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 535

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/540 (10%), Positives = 136/540 (25%), Gaps = 65/540 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS  +             ++   +  N+ N     + + D +                  
Sbjct: 1   MS-FSSLYVGATGVVAHGERMQVVANNLANVSTIGFKKADALFGDLMSSQLGYGGGQFES 59

Query: 44  -----TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                +   + V++   R+      +  L   ++          F  +++  +       
Sbjct: 60  GSSYASQMGQGVSMSAIRTV---FAEGGLENTTTTTDLAITGNGFFGVRDTTAGGTM-GA 115

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           S        R + ++Y  +  +  L    +D    VV    +  +   +      + + L
Sbjct: 116 SHYTRAGSFRFNNDAYLVDPHDFRLQGYAVDRETGVVATQVSDVQLPYEDVVIDGQPVRL 175

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
             S  R       V N             + F    +              +   ++ + 
Sbjct: 176 VRSQPRATTDVEMVTNLDAVATEQYSSATNPFFAMLEAYNGSSGSKPFGENLPAYSSALT 235

Query: 219 VYTSDG----TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
           +Y +DG     T++       +           E           S   G++        
Sbjct: 236 IYDADGNEHEMTVYFDPVNASSLSNAAPGYSYWEYLVALPGSSDGSGAYGTSAAGLAGMG 295

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           +L    S   + Q+           + S   P   N +  P +    G         Q +
Sbjct: 296 VLTFNGSGQLVGQSAYSLTGGADGKNLSNWAPATFNLDGEPQVSFTFGSNGAAIGTEQLV 355

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVK----------NLAGYPDLINHYCDSFNK 384
           S    +     +  S       V       V+            +        Y      
Sbjct: 356 SYDFGLTSTTSTWLSGAATAAGVGLNVGNLVQMANEARDARITTSYDQSSFTAYQIQDGF 415

Query: 385 NFIFDPVAGINTNVTLLEYARNS------------------------IGWLEKNRSDSHD 420
            + +     ++ +  L  Y  N                           ++  + S +  
Sbjct: 416 TWGYLLNTSVDGDGFLSGYFSNGQTEEFYQVANYRFASEWGLRRDGGNNFVATDASGAAM 475

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                        ++      V++ EE + +I  ++ Y  + K+I  +D +L TL+   +
Sbjct: 476 DGKALVGGRGSFVQNTLEMSNVDMAEEFASMIITQRGYQANTKVITTSDSLLNTLISVKR 535


>gi|240145383|ref|ZP_04743984.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           L1-82]
 gi|257202504|gb|EEV00789.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           L1-82]
          Length = 587

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/392 (11%), Positives = 103/392 (26%), Gaps = 31/392 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SP 47
                       ++         N+ N D   YVR+  +                   S 
Sbjct: 5   FGSMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFNTTAAISNQQSG 64

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             VT+           D++    SS               +     +    +    ++  
Sbjct: 65  LGVTIGDVVHSRDVFLDRLYRTESSRQSFYASTSEALTEVQNYYQ-ELEGQAFQDALTDF 123

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             S +       + +    VI  A+      +     ++  + + + +I  +I  +    
Sbjct: 124 WGSFQELYNYPEDSVYQNLVIQKAQLFTSRSSAVYSGLKSYQYNINSQISDDIDQVNELG 183

Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             ++ +N  I+   A     A    D RD+ L +++ ++ IS     N  + V       
Sbjct: 184 KTISELNLQIQKIEAGNIETAMTLRDARDLALDELASLVDISYKEEVNGVVRVSVEGNEF 243

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFID----------GVVVSSNQGSAVPKGKIKALL 276
           + E     +  +   +    +       D                +  +    G+IKAL+
Sbjct: 244 VNENGYYKVEKQTDKATGFVTPYWSHLSDPDKGEYTYLFNFNRDISTENKNDMGEIKALV 303

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             R   V  +++ L    +    +                  +  GI    N +    +E
Sbjct: 304 LARGDKVANYKDILGVDGKTYDDTTGM---SVMLRAEAQMDQLFHGIATAINDILCPNTE 360

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                     N S        +   +     +
Sbjct: 361 ASNYITGLTGNGSVTMTDADGNTYTVTANTKI 392



 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 13/238 (5%)

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLI 298
            +   ++    +  +G V  ++             +   D        +L   E+   L 
Sbjct: 357 PNTEASNYITGLTGNGSVTMTDADGNTYTVTANTKILDADKCAVGSDGKLPPQELFTRLG 416

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                +      +      +     +D  +   Q    +  VN    ++ + L       
Sbjct: 417 TERYTEVSYTDPASGETKTYYLYNEEDPADTTKQYTMGSTSVNSALITDETLLPHLRQNG 476

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                           +     +                 +  +Y    IG +    +  
Sbjct: 477 DVDQS-----------LMATLAAVWDKESLTVNPNDTKAYSFKDYYAAMIGEVATYGNVY 525

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +            +       +GV+  EEL+++IK + +YN S++ I   ++M++ L+
Sbjct: 526 NSTATNLSQTVQSVDNQRQQVIGVSSDEELTYMIKYQNAYNASSRFINVINEMIEHLI 583


>gi|170725955|ref|YP_001759981.1| flagellar hook protein FlgE [Shewanella woodyi ATCC 51908]
 gi|169811302|gb|ACA85886.1| flagellar basal body FlaE domain protein [Shewanella woodyi ATCC
           51908]
          Length = 453

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/484 (9%), Positives = 108/484 (22%), Gaps = 44/484 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  + A +   +   NI N ++  +            N              T 
Sbjct: 2   SFNIALSGISAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTAVGGGATT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L   ++A+        F      + + DH            +    +Y 
Sbjct: 62  SQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSSLDSQDHT----FTRAGAFKVDSNNYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D          T+   V         ++  EI       +    ++ 
Sbjct: 118 VDSQGNFLQTFGVDKDGNSTSVSLTTTSPVIIPDTAGSPKMTDEIGIQMNLNAGDDTLDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVPRD 234
                           D  D      S  + +   +   +     +       +      
Sbjct: 178 -------------AAFDPNDRDTYNNSTAVTLYDSLGEPHIMTTYFVRPPQAAYTGASNW 224

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           + F  ++   V                    +          +            +    
Sbjct: 225 VAFYAVDGKQVDLAGPAGTYQTDTTGDGNADSSGSATTAGGWKGSVLTYNDTGAYVGSDP 284

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            V+       +                          Q ++       QY S        
Sbjct: 285 AVVTTEELGVNGAGVLGPG--------------ADGTQTLAVKYNNPTQYASTFEVTELT 330

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +         +     +   Y +          +A       L +       W    
Sbjct: 331 QDGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALARFANEQGLTQVGN--TSWKASL 388

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        +   F  I  S      V+L  EL  LI  ++++  +++ +   + + QT
Sbjct: 389 DSGLALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQT 448

Query: 475 LLEG 478
           +L+ 
Sbjct: 449 VLQI 452


>gi|320186970|gb|EFW61683.1| Flagellar hook-associated protein FlgK [Shigella flexneri CDC
           796-83]
          Length = 547

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/546 (9%), Positives = 133/546 (24%), Gaps = 70/546 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYISKL 107
              + E        L A  +            +  + M +    +           +  L
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF- 166
             + E  +   +     + +++  +   Q      ++V      +  +I      +    
Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180

Query: 167 ------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
                        S   +++   +  +         +  +D     I+   G S +  + 
Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
              +           T    ++    N        N   + G++   +Q     +  +  
Sbjct: 241 ARQLAAVPSSADPSRTTVAYVDGTAGNIEITEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300

Query: 275 L------------LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
           L                D+     ++        ++ +   K  +A  +       +   
Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
              +     Q     +  N  +   P           +  +           +    D+ 
Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420

Query: 383 NKNFI------------------------------FDPVAGINTNVTLLEYARNSIGWLE 412
               +                                    +    +  +   + +  + 
Sbjct: 421 VNMDVLITDEAKIAMASEKDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIG 480

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +           V   +S    +  GVNL EE   L + +Q Y  + +++   + + 
Sbjct: 481 NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 540

Query: 473 QTLLEG 478
             L+  
Sbjct: 541 DALINI 546


>gi|320353949|ref|YP_004195288.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122451|gb|ADW17997.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM
           2032]
          Length = 423

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/491 (10%), Positives = 125/491 (25%), Gaps = 79/491 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M L +    A +    +SQ       NI N+    +    T+ +            + + 
Sbjct: 1   MGLSSALFTAISGLQGSSQAMTVTGNNIANSSTVGFKTSSTVFSDLLSANIASSSGNSQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                 ++   +       +  SA         F      +  D   + S          
Sbjct: 61  GRGSQVQTVQTSFSQGGFESTESATDIAIEGSGFF-----IVGDPLSDTSLYTRNGNFSF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y        +  +  +    +       +  +  I+ D   +I+            
Sbjct: 116 DDDGYLVTADGYRVQGSTYNANGVLA------SGNLSDIQVDLVSQIK------------ 157

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                       A + +        D   + ++  +  ST   + ++    T+   +L  
Sbjct: 158 ------------AKRTENVTLQTNLDSNSEVLNAGVFDSTAPEDTSNYATTTTVYDSLGT 205

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                  F K+N  T          D    +S     +  G +                 
Sbjct: 206 AHLLTCYFTKVNDQTWNWNLTVDGADLTGGTSGVLEIIGSGTL----------------- 248

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                          D     S    G   +  +   +          +    Q+ S+ +
Sbjct: 249 -------------VFDQDGNLSTGSTGTTTSGILTWANGADQTQQLAYVFDTTQFDSDST 295

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                            ++A    +   Y +          +A    +  L     +   
Sbjct: 296 VFSQDQDGYASGEVTDVDIAADGTVSAVYSNGETIPVAMIALATFINSDGLDAVGSSL-- 353

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E   S +  +          +         V+L  E   LI ++ +Y+ ++K+I  T+
Sbjct: 354 YRETGESGTPTIGYPG-ASQGTLITQALELSNVDLATEFVDLITIQNAYSANSKVITTTN 412

Query: 470 KMLQTLLEGVK 480
           +ML  L+  ++
Sbjct: 413 EMLDELVNLIR 423


>gi|148554189|ref|YP_001261771.1| flagellar basal body FlaE domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499379|gb|ABQ67633.1| flagellar basal body FlaE domain protein [Sphingomonas wittichii
           RW1]
          Length = 435

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/482 (10%), Positives = 106/482 (21%), Gaps = 59/482 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVVTQR 56
            F  A +    +    A I  NI N     + R  T             S         R
Sbjct: 2   SFYTALSGLKASQTDLAVISNNIANVGTTGFKRSGTEFGDLVSSSPMQSSGIAGQGTRLR 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +      L +   ++      Q F     +  A +                   +  
Sbjct: 62  GIAQQFTQGGLESSERSLDLAISGQGFF----VTRASNSNGQVSYTRNGAFSVDANRFLV 117

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + S   L     D    V     +SAR +Q        +    I                
Sbjct: 118 DSSGAYLQALPTDTKGNVTATGLSSARSIQLPLTSGTSKATQTID--------------- 162

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                               L         + +     +    Y  D T           
Sbjct: 163 --------------------LSVTFPSAGDVPSTRAIYSTTNPYKFDRTDPNSYNQSTTT 202

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                +      +     + +   S   +           +I        Q     +   
Sbjct: 203 TVYDAAGNAFPMTTYYIRENLPGGSVTDTNWTAHTFIGDTEISYDSSAATQPAPLTL--- 259

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                   D     +     + +        +   +             S  +       
Sbjct: 260 ------TFDSTGAKTAPSGAINLGPLTPAGASAPLEFTLNYSGSTKMSASPFTLTSFDQD 313

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +  ++     ++  + +  ++      +A  +    L +   +   W     S
Sbjct: 314 GYAAGQLDNVSVGADGLIVATFSNGDSQALGKIILANFSNPEGLRQLGDSK--WGATGLS 371

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +   S      I         V++ EEL  LI+ +++++ + K I   + M QT++
Sbjct: 372 GEPIIGEASSNGTGQIQSGALEQANVDITEELVALIQAQRNFSANAKTIEAANTMTQTIV 431

Query: 477 EG 478
             
Sbjct: 432 NL 433


>gi|218887610|ref|YP_002436931.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758564|gb|ACL09463.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 702

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 84/243 (34%), Gaps = 12/243 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            + ++ N  Q           +   NI N +   Y R+                      
Sbjct: 3   GVTSLLNMGQLSLLANQTAIQTTGNNIANVNTVGYSRQAVRFEEYPALDGFPGQIGTGAY 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                       +K     +S   +           E +  ++         +S+     
Sbjct: 63  AAEVYRYFNGFVEKSYLDKASQQSRWDSQYEMLQSVESLF-NESTTPGINAAMSQFFADW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++ S+   +      ++ +++ +V+    S   ++ ++   D+ ++ E++     + ++ 
Sbjct: 122 QALSQRPDDKASRDALLSHSDNLVKLLQNSESNLRIMQQQMDQYLKQEVTEANSLIKQIA 181

Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N  I+       ++A+  +D R++L++++S+ + +  +   +    V T  G TL + 
Sbjct: 182 ELNRQIEMHDDPGKNNANTLIDNRNLLVRQLSQKLDVDVVDNGSGKFTVVTKAGHTLVDG 241

Query: 231 VPR 233
           V  
Sbjct: 242 VNA 244



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/448 (10%), Positives = 121/448 (27%), Gaps = 26/448 (5%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
           Y      +            R         +     +        +  +   + +     
Sbjct: 278 YTLDVVQSGAVTSGAGAAMYRVSLDGGKTWLKDETGNDRLFAARPEDQKVKVQGLDIYFS 337

Query: 96  YNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
            +        +   + +S  Y    +   L  +    A+    +   +   +       D
Sbjct: 338 GSTQNLEAGDRFTVTPKSGVYWVTPTTSPLNISPQTMADGTDNSRRITGGTIGGFMIFRD 397

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
            ++   +  +                       +   + + + L  + + +  +S +   
Sbjct: 398 TQVGRYVDRVNAL--------------------SESLIWEVNRLHSQGAGLDHMSVMSGT 437

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
                   + G+        +       S  V   ++  ++       +  +A P  +  
Sbjct: 438 YGVADPSIALGSDSSGLAWLNRLEAGNFSMYVYDANSGAYLSNASGPLDFDTATPGIQN- 496

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                    +   ++ L+      I +    + +   S +     +      L   L   
Sbjct: 497 --FDPTVHSLNDVRDALNNTFGTYINADIVDNKLVVRSNSGYKFGVGADSAGLLAGLGLN 554

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                         P    D   ++        +  AG  D          K        
Sbjct: 555 TYFQGSDASTISVRPDVRSDTNFINAGKVNGGNEANAGDNDTATAIAGLATKEVTISTTF 614

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
              ++ TL EY    +  +  + + +      +  +   + E  S + GVNL EE++ L+
Sbjct: 615 ERASSQTLSEYYSAIVATVGADTASTKFNAAYTATLAKDLDERQSASSGVNLDEEMASLV 674

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           K + +Y  + KL+   D+M+QTLL   +
Sbjct: 675 KFQHAYKAAAKLVTTADQMMQTLLGLKQ 702


>gi|237731007|ref|ZP_04561488.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
 gi|226906546|gb|EEH92464.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
          Length = 417

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 104/476 (21%), Gaps = 64/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  + +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRMVD------SNGSVFYSRNGQFKLDENRNIVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           VQ     A         A K        +    ++            A
Sbjct: 116 LTGYPATGTPPTVQQGANPAPITIPNTLMAAKSTTTASMQVNLNSTDKVPTKTPFNPSDA 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             ++    +   D         I       +N   V      T   E     + F+    
Sbjct: 176 DSYNKKGSVTVFDSQGNAHDMNIFYVKNKESNTWEVFTQDASTGDAEKSAGFMRFDNNGL 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +   S +             +   +  G I                              
Sbjct: 236 FLGISATAAEVPPTAPAVWPKDIKITTGPING---------------------------- 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 268 -------------------------AVPANFSLSFLNSMQQNTGANNIVATNQNGYKPGD 302

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 303 LVSYQINNDGTVVGNYSNEQQQVLGQIVLANFANNEGLASQGDNV--WAATQSSGVALLG 360

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +  F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 361 TAGEGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 416


>gi|118588735|ref|ZP_01546143.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614]
 gi|118438721|gb|EAV45354.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614]
          Length = 463

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/493 (10%), Positives = 121/493 (24%), Gaps = 43/493 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +    N A +     ++   +I  N+ N+    Y R DT  +           +  + 
Sbjct: 1   MGIYGAINSAVSGLAAQAKALENISGNVANSQTTGYKRLDTTFSDLVSGGGSKQAQQVSG 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEM-------------MSADDHYNNSPTHYISKL 107
             F      ++       +                         +    + +        
Sbjct: 61  TTFATSRATNTVQGDITSVDVDTYMAINGPGYFVVTKASDVVDGSTTFADETYYTRAGDF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
               E Y  N S   L    +D         N +  +++     A               
Sbjct: 121 ERDKEGYLINSSGYYLQGFPLDPNTGNAIGDNPTVIQIENQPLAASATTA---------- 170

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                V+           + +D  D+   LL        ++     +      +    T+
Sbjct: 171 -----VDYQANLPRVPATNDYDGTDESTALLNATVGAGNVAVANEADFLNSSISGGSITI 225

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
           +      +  E   + T   ++      G  V  +  +        A     D     F 
Sbjct: 226 YNQNGTAMPVEVRYAKTANYDA------GPPVVEDAWTMYIGTGGDATDAWYDVGTIQFD 279

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +  +     L         + G+ +      +  G     N        ++         
Sbjct: 280 DTGE--MTTLTAGAMAGSAVNGSGDGFTISSLTIGGTTAANVEFSFADGSLTQYSDKDGR 337

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            S +                +     +I  Y ++  +     P+A       L       
Sbjct: 338 ASSVSLDQDGFPAGELTGVAVDASGRVIASYSNNQQRPVYQIPLATFQAEQDLQRV---- 393

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                   + +             I          ++ +E S LI  +Q+Y+ +++++  
Sbjct: 394 ---DGAAFAATAGSGDADLSGGGQILAKKVELSNADIADEFSKLIITQQAYSANSRIVTS 450

Query: 468 TDKMLQTLLEGVK 480
            D+ML   L  V+
Sbjct: 451 ADEMLDDALNMVR 463


>gi|58582195|ref|YP_201211.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624088|ref|YP_451460.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426789|gb|AAW75826.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368028|dbj|BAE69186.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 407

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/476 (7%), Positives = 105/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  + A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +             +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +       +    + +      AL    + ++                   
Sbjct: 208 KTANPNEWQVHNYVDGAAVGSPTTLQFSDTGALTTPANGIIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          +   +  + QY    +             
Sbjct: 250 -----------------MAPFTPSTGAGVLSMQLNVSGSTQYGEQFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTS 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I      +  V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APGTSDLGQIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|332673917|gb|AEE70734.1| flagellar hook-associated protein FlgK [Helicobacter pylori 83]
          Length = 606

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLMVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               ++   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLMVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|308184859|ref|YP_003928992.1| flagellar hook-associated protein FlgK [Helicobacter pylori SJM180]
 gi|308060779|gb|ADO02675.1| flagellar hook-associated protein FlgK [Helicobacter pylori SJM180]
          Length = 606

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/480 (13%), Positives = 135/480 (28%), Gaps = 35/480 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVIKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + N          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSANHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           D       N T     +          S   D       +  +      +   ++L +E 
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVSMKDDGTNFMGALKLNPFFQGDDASNISLNKEY 480



 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  TH ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVIKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          N+ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSANHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDDGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMLNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606


>gi|317009731|gb|ADU80311.1| flagellar hook-associated protein FlgK [Helicobacter pylori India7]
          Length = 606

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQNMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T+ ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + +I   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606


>gi|291334320|gb|ADD93981.1| flagellar hook associated protein 1 [uncultured marine bacterium
           MedDCM-OCT-S09-C247]
          Length = 354

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 121/331 (36%), Gaps = 18/331 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-------------MTTISPEN 49
           +  ++  A++      +  A+  +NI N  NK+Y RR+              ++  +   
Sbjct: 1   MSDIYGIAKSGLQAYKEGLATTGQNIANVGNKDYARREAPVSEVKSSNDVLQVSNTAGFG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V           D  L + +S+              E +        S +  I +L  
Sbjct: 61  VRVDGITRAFDQFIDTQLQSAASSFSFSTSQAVVLNQLETV--VRPSEGSVSQKIQELFS 118

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           SL + +++ S+        D ++ +V +  T A  +  +R    ++IE  I      L++
Sbjct: 119 SLNTVAQDPSDLASRHVAADASKALVNSITTVANGISDLRTFVSQDIESNIGQANDILTQ 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L  V + +   ++S    ++ LD+RD LL  +SE+I I+   ++N  + V    GT    
Sbjct: 179 LANVQNQLLGISSSNRGPNELLDKRDALLNDLSELIDITVDYKSNGILEVN--AGTFGQG 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                              ++ IF+            V  GKI       D  +   ++ 
Sbjct: 237 QSLISGVQISKLEVQKVDGTSKIFMRTANGDGLSKIQVQAGKIAG-NLASDLTLVETKSA 295

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           LD+++R L+  F+E      +     G    
Sbjct: 296 LDQLSRKLVNEFNEAHTFGVDLNGELGRKFF 326


>gi|221639495|ref|YP_002525757.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131]
 gi|221160276|gb|ACM01256.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131]
          Length = 423

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 106/483 (21%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
             N A +  + A    A+   NI N     +            +      R         
Sbjct: 2   SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      + A  + +      Q F A +  +  +                + E  +
Sbjct: 62  LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L    +    + +     SA  +              ++      ++  ++  
Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDDAMLGR 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A+  D  D                   T       + ++ + G  +        
Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                     T  +  + + G                          +   Q  L     
Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                         ++                +     +  T           + +   G
Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDG 302

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        + +G   +   Y            +        L +   +  G+     
Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  I         V+L EEL  LI  +++Y  S K +  ++ ++QT+
Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418

Query: 476 LEG 478
           +  
Sbjct: 419 MNI 421


>gi|114777402|ref|ZP_01452399.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1]
 gi|114552184|gb|EAU54686.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1]
          Length = 467

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/495 (11%), Positives = 120/495 (24%), Gaps = 43/495 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           M +        +   +  +    +  NI N ++  +  +    T                
Sbjct: 1   MGIYNALFSGASGLTSFGEAVRVVGDNIANVNSIGFKSQSVSFTDVLSQTIGVSSTGSQQ 60

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V + T            +   SSA           AL++        N +      
Sbjct: 61  VGNGVKIGTISRNQ---MQGSIQNTSSATDMAINGNGLFALRD-----PATNQTSYSRAG 112

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
             +        +   +I+    ID    +      SA ++      A  +    +++   
Sbjct: 113 SFQLDKNFNLIDGGGNIVQGYAIDP---LSGKAIGSATDLSFGNLAAQAKSTANVTSSLT 169

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             S   V+     F  A     H   D         + ++         +       D  
Sbjct: 170 LDSTAPVLPTGTVFNPADPATFHFKSDVTVFDALGATHVVSQQFTRMGQDAAGNNVWDYH 229

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           T  +            +      ++ +   G V +    +                V   
Sbjct: 230 TSVDGKEIVGGTAGTPTEVGAPTASTVSAGGTVTAIGTQTL---------------VFGP 274

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               + E A     ++S                                   +    Q  
Sbjct: 275 AGELVQENAPPATFNWSGSAASTITLNFGNAAGQGTLYPVATADSQGITGTGLDATVQMA 334

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
              +  +           +         +   + +   +      +A    +  L     
Sbjct: 335 GAFATRQVSKDGYAAGFLDTLTTDSSGTVSGTFTNGQRRALFQVALAKFPNDAVLNHVGG 394

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N +   E  +S S  L          I+        V+L  E   LI V++ Y  ++K I
Sbjct: 395 NLM--QETIQSGSPVLEKPGNGGMGTITPYGLEQSNVDLAAEFVKLIVVQRGYEANSKTI 452

Query: 466 MFTDKMLQTLLEGVK 480
           + TD+ML +L++  +
Sbjct: 453 LTTDQMLSSLMQLKR 467


>gi|123442784|ref|YP_001006761.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161322|ref|YP_004297899.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122089745|emb|CAL12598.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605242|emb|CBY26740.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665552|gb|ADZ42196.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860606|emb|CBX70903.1| flagellar hook protein flgE [Yersinia enterocolitica W22703]
          Length = 419

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 108/476 (22%), Gaps = 62/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTTTTTNRRLDLAISQSGFFRMQD------SSGGVLYARNGQFKLDENRNIVNMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    +      ++     N      T 
Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVALSVPQNMIPAKATT 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S     +     DV        I ++T             +  T F+++           
Sbjct: 151 SGTMVANLTSTHDV--------IPVATTFDPTKPDTYSFVNNMTTFDSLGNRHEINVFYV 202

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S +     D   + S+   A    K  ++    +  +    N              
Sbjct: 203 KRSESTTAGNTWDVYTLDSSAKPAETADKRGSMTFDTNGALQSVTN-------------- 248

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   +                               Q     S +    +      
Sbjct: 249 ----GTNPASTSDFTLTIPMGVVNGAPAQTFTLSVAGSKQQNTGTDSIVTQNQTGYAAGE 304

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +S  +      +        L     N   W E   S +  L 
Sbjct: 305 FTGFQINNDGSIVGTYSNSQTQLLGQIVMVNFANPEGLSSEGDNV--WKETLSSGNPILG 362

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 363 TAGSGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 418


>gi|166712062|ref|ZP_02243269.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 407

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/476 (7%), Positives = 106/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  + A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +             +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +       +    + +      AL    + ++                   
Sbjct: 208 KTANPNEWQVHNYVDGAAVGSPTTLQFSDTGALTTPANGIIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          +   +  + QY    +             
Sbjct: 250 -----------------MAPFTPSTGAGVLSMQLNVSGSTQYGEQFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNM--WAESYTSGAARTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +      I      +  V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APNTSDLGQIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|119477947|ref|ZP_01618047.1| flagellar hook-associated protein K [marine gamma proteobacterium
           HTCC2143]
 gi|119448860|gb|EAW30102.1| flagellar hook-associated protein K [marine gamma proteobacterium
           HTCC2143]
          Length = 676

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 137/409 (33%), Gaps = 21/409 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N   +      +       NI NA  ++Y R+    +                TV  
Sbjct: 2   SLLNVGISALTTNQKLLQVTGNNISNAGVESYSRQRAEVSTRPEQLLGGSYQGTGNTVDN 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       +   +S+              + + +DD      +  +S+   ++ES 
Sbjct: 62  ISRVVDQFLITQIQLDTSSRSSLEAFARNMEQVDGLLSDDFS--GLSAILSEFFAAIESS 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +++ + +   + VI  AE +    N  +  V++     D ++    S        +  +N
Sbjct: 120 AQDPTSEPARQVVITQAESLALKINNLSDRVEQQLNFVDGQLRALSSQATTLAKGIASLN 179

Query: 175 DAIKF--KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           + I            +  LDQRD +L++++EI+ IST+   N D+ V+  +G  L     
Sbjct: 180 EGIADQVARGGGAQPNQLLDQRDEMLRQLAEIVNISTVKDGN-DLNVFIGNGLPLVTGFK 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 +          N + +    VS      +  G++  LL  R  V     N +  
Sbjct: 239 ALALDTQQGVD----GVNIMLVGRGSVSQRVTHLMSGGEMGGLLDFR-EVGGDLLNVIGR 293

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +   L  S ++++ +  + +   G  I   +        + I++     P  ++    + 
Sbjct: 294 IGIGLADSVNQQNALGIDLDGNAGGTIFRDVNAGTIPQSRIIADGDNSAPTLQNMAINIT 353

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
           D G ++    + +  +         Y      +     V GI    ++ 
Sbjct: 354 DVGQLTTS-DYRLSVVDNDGAAPLDYRILRVSDNATTIVNGIAGAQSIA 401



 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/455 (11%), Positives = 126/455 (27%), Gaps = 21/455 (4%)

Query: 34  KNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93
             +      T    + V ++     + +     L +     G     +    L  ++   
Sbjct: 235 TGFKALALDTQQGVDGVNIMLVGRGSVSQRVTHLMSGGEMGGLLDFREVGGDLLNVIGRI 294

Query: 94  DHYNNSPTHYISKLRDSLESYS-------KNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                   +  + L   L+  +        N       + + D         N +     
Sbjct: 295 GIGLADSVNQQNALGIDLDGNAGGTIFRDVNAGTIPQSRIIADGDNSAPTLQNMAINITD 354

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
             +          + N      +  ++  +    T     A       D     IS    
Sbjct: 355 VGQLTTSDYRLSVVDNDGAAPLDYRILRVSDNATTIVNGIAGAQSIAIDGFSIDISSATQ 414

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            +  + +   +    + G           +     +       +   +    + +N    
Sbjct: 415 ANLALNDQFRIRPTRAGGA----------DTTVDITRQQELAYSVPVVTDAKIGNNGTGV 464

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
           +  G++ A++      +    N + + A VL      +   A +          +     
Sbjct: 465 ISSGEMLAVVDDSALALTPA-NPIYQSAGVLAAPVLIQFTTATDYTVYETSDPFNPAVLF 523

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK-NLAGYPDLINHYCDSFNKN 385
              +  G    I       ++P+F+    ++      N +  +    +  +   ++   +
Sbjct: 524 SGTIIPGQKNEI--FGSQGTDPNFIGFQVTIDGAPQVNDEFTIDFNQNGSSDNRNAAALS 581

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            I         +          I  +    + +      S+ +      S  +  GVNL 
Sbjct: 582 GIRAQNILDGNSTNFENSYGRLIERIGTQTAQAKVGRDASESLLFQSQASRDSMAGVNLD 641

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           EE + LIK EQ+YN S +LI    ++  TLL  ++
Sbjct: 642 EEAANLIKFEQAYNASAQLITVARQIFDTLLSSLR 676


>gi|307546968|ref|YP_003899447.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581]
 gi|307218992|emb|CBV44262.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581]
          Length = 422

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/476 (11%), Positives = 132/476 (27%), Gaps = 59/476 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     +  NI N+    +   DT+      N  V          ++ 
Sbjct: 2   GFSQALSGLNAASSSLDVLGNNIANSQTVGFKGSDTLFADVYANSKVGLGTKVSRVLQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  L +    +      + F   ++                 +L  + + Y +N     
Sbjct: 62  GEGNLESTGRNLDLGISGEGFLRFQQN-------GEVVYSRNGQLSMTADGYLENAQGAR 114

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +++A +V      S  +V      A    ++  +     L     V + +     
Sbjct: 115 LMGFGVNDAGQVQTGGQPSVLQVSAEEMAASATTDVATT---LNLDSREAVGEQLDQVDV 171

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   +    +Q+ +     +      ++    N  V Y   G   +              
Sbjct: 172 TTDMSDPANNQQTLDYHYANNFTAYDSLGNPRNATVYYQKTGANSW-----TGRVTMDGH 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           Y  +++    F +   +++  G+          + +          +  E++  L     
Sbjct: 227 YDASNDFTLTFNNSGQLATINGNDAGDPANMPTVSVASDNTTPLGGEPAELSFTL----- 281

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              I  + Q+ +                
Sbjct: 282 ----------------------------------DIAGSTQFGNTSRASDLIQDGYTSGS 307

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     ++ +Y +  ++      +A       L     N   W     S    + 
Sbjct: 308 LVGISIEDDGTIVRNYTNEQSRPAGQVSLASFRNPEGLDPVGDN--AWAATAASGQELVG 365

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    I      +  V++ +EL  +I  +++Y  +++ I   D++LQT +  
Sbjct: 366 APGTGQLGGIQSGVVESSNVDMAQELVDMIVTQRAYQANSQTIKTQDEVLQTAINL 421


>gi|291534844|emb|CBL07956.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           M50/1]
          Length = 589

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 106/395 (26%), Gaps = 30/395 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SP 47
                       ++         N+ N D   YVR+  +                   S 
Sbjct: 5   FGSMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFNTTAAISNQQSG 64

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             VT+           D++    SS               +     +    +  + ++  
Sbjct: 65  LGVTIGDVVHSRDVFLDRLYRTESSRQSFYASTSEALTEVQNYYQ-ELEGQAFQNALTDF 123

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             S +   K   + +    V+  A+      +     ++  + + + +I  +I  +    
Sbjct: 124 WGSFQELYKYPEDSVYQNLVVQKAQLFTSRSSAVYSGLKSYQYNINSQISDDIDQVNELG 183

Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             ++ +N  I+   A     A    D RD+ L +++ ++ IS     N  + V       
Sbjct: 184 KTISELNLQIQKIEAGNIETAMTLRDARDLALDELASLVDISYKEEVNGVVRVSVEGNEF 243

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFID----------GVVVSSNQGSAVPKGKIKALL 276
           + E     +  +        +       D                +  +    G+IKAL+
Sbjct: 244 VNENGYYKVEKQTDKVTGFVTPYWSHLSDPDKGEYTYLFNFNRDISTENKNDMGEIKALV 303

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             R   V  +++ L    +    +      +   ++            +         S 
Sbjct: 304 LARGDKVANYKDILGVDGKTYDDTTGMSVMLRAEAQMDQLFHGIATAINDILCPNTEASN 363

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
            I       +N   + D    +     N K L   
Sbjct: 364 YITGLT--GNNSVTMTDADGNTYTVTANTKILDAD 396



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 48/166 (28%)

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
              V     +               +      QY    + +       +  L +++    
Sbjct: 420 YTEVTYTDTSVNPPTTKTYYLYNEEDPTDTTKQYTMASTGVNSALITDETLLPHLQQNGD 479

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
               +     +                 +   Y    I  +    +  +           
Sbjct: 480 VDQSLMATLAAVWDKESLTVNPNDTKAYSFKGYYTAMIEEVATYGNVYNSTATNLSQTVQ 539

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +       +GV+  EEL+++IK + +YN S++ I   ++M++ L+
Sbjct: 540 SVDNQRQQVIGVSSDEELTYMIKYQNAYNASSRFINVINEMIEHLI 585


>gi|95928662|ref|ZP_01311409.1| protein of unknown function DUF1078-like [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135452|gb|EAT17104.1| protein of unknown function DUF1078-like [Desulfuromonas
           acetoxidans DSM 684]
          Length = 425

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/480 (8%), Positives = 110/480 (22%), Gaps = 55/480 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L +      +     ++  +    NI N++   Y    T+ +                
Sbjct: 1   MGLTSTLYSGISGLQTNAEAMSVTGNNISNSNTIGYKSSSTVFSDM-------------- 46

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 +    +++ Q         ++   S     + S    ++         S   ++
Sbjct: 47  --LSATISTTGTSVNQVGRGSELTTVRSNFSQGSFQSTSSDTDLAVEGAGFFMLSAAGTD 104

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           +++         +       +                               V   +   
Sbjct: 105 EVVYTRNGAFHFDPGGYLVNADGY---------------------------RVQGQLFDA 137

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +         + D+  Q  +       +  N N        G  L +           
Sbjct: 138 DGTPGGGDPVDIKVDLTSQVPALQTSNIVLTTNLNSGTEEIPGGFDLSDPSESSNYSTST 197

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
             Y            G    +         +      + DS          E + V+   
Sbjct: 198 PIYDAL---------GETHLATTYFTKTGDQTWEWNTVVDSADLDPSVASSEESTVIGTG 248

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               D                 +                   Q+    +           
Sbjct: 249 TLTFDDDGQLIGTSGFDLDETTLMWASGADPTQSIAIEFDTTQFGRTSTVYSQDQDGYAA 308

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++     +   Y +   ++     +A       L++   +         S +  
Sbjct: 309 GEVVETSINSDGVVSVSYSNGETRDIATLTLATFTNPGGLVKEGNSLYS--ASRYSGNPQ 366

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +          I  +      V+L +E   +I ++  Y+ ++K+I  TD+MLQ ++  ++
Sbjct: 367 IGTPG-ASQGIIYTNSLELSNVDLSQEFVDMITIQNGYSANSKVITTTDEMLQEVINLIR 425


>gi|254470088|ref|ZP_05083492.1| flagellar hook protein [Pseudovibrio sp. JE062]
 gi|211960399|gb|EEA95595.1| flagellar hook protein [Pseudovibrio sp. JE062]
          Length = 561

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/563 (10%), Positives = 137/563 (24%), Gaps = 85/563 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49
           MS+    N A    +  S+   +I  N+ N+    Y R DT  +                
Sbjct: 1   MSIYGAINSATTGLDAQSKALENISGNVANSSTTGYKRLDTSFSDLVSSTGSRQAEQVSG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             + T R+ N       + +             +  +            S          
Sbjct: 61  TVIATSRATN--YLSGDITSADRNTYMAINGPGYFLVTNRDGLGQETPESFYTRAGDFEL 118

Query: 110 SLESYSKNLSEDILGKTVIDNAEE----------------VVQNFNTSAREVQKIRADAD 153
             E    N +   L    I+ A                    Q       +         
Sbjct: 119 DTERNLVNSAGYFLQGYPINPATGAVSDRAVPIQVSDAPMPAQPSTQINYQANLPSKPTT 178

Query: 154 KEIELEISNLRRFLSELT---------------------------------VVNDAIKFK 180
              +           + +                                  +ND I   
Sbjct: 179 ANYQKTDGAANSQYVDPSVFAEPHELQTPVLDDTSSVKLTADQKLTDAKQFSLNDTITLS 238

Query: 181 TASKHD---AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR--DI 235
                D             LL K+S + G++  ++ +  + + +     + +        
Sbjct: 239 LGGNPDEVFTVKADTTVQDLLDKLSSMHGVTAELQADGKINISSLSELNVVQAGTAVPGQ 298

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL-DEMA 294
            F  M+       S   +   VV        +          + D        +L   + 
Sbjct: 299 TFLNMDFDPQPLASTGTYDPNVVTGDKADDFIKSSIAGGQETVYDENGTPVNVELRWALN 358

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF---- 350
                S           + V    I+D   D   +L    S  + +     +        
Sbjct: 359 AENKWSLFYNTNTKATGDEVAWKKISDMSFDAAGRLTSPASGLVDIPDLEVNGVGMGDIT 418

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L+ G     ++   +   +      + +     ++   D    +    +  +  +     
Sbjct: 419 LKFGLDDLTQYEDVIGGASNIGTSQDGFPSGKLQDVSVDAEGNVIGKYSNDKSQKLFKIP 478

Query: 411 LEKNR-------------SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
           +                 S++             I      +   ++ +E S LI  +Q+
Sbjct: 479 VATFAAEHELQRVDGAAFSETSTSGEPDFRNGGTIRAKALESSNADIAKEFSKLIITQQA 538

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y+ ++K++   ++ML ++L  V+
Sbjct: 539 YSANSKVLSTANQMLDSVLNIVR 561


>gi|291539398|emb|CBL12509.1| flagellar hook-associated protein FlgK [Roseburia intestinalis
           XB6B4]
          Length = 587

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/392 (11%), Positives = 106/392 (27%), Gaps = 31/392 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SP 47
                       ++         N+ N D   YVR+  +                   S 
Sbjct: 5   FGSMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFNTTAAISNQQSG 64

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             VT+           D++    SS               +     +    +    ++  
Sbjct: 65  LGVTIGDVVHSRDVFLDRLYRTESSRQSFYASTSEALTEVQNYYQ-ELEGQAFQDALTDF 123

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             S +   K   + +    VI  A+      +     ++  + + + +I  +I  +    
Sbjct: 124 WGSFQELYKYPEDSVYQNLVIQKAQLFTSRSSAVYSGLKSYQYNINSQISDDIDQVNELG 183

Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
             ++ +N  I+   A     A    D RD+ L +++ ++ IS     N  + V       
Sbjct: 184 KTISELNLQIQKVEAGNIETAMTLRDARDMALDELASLVDISYKEETNGVVRVSVEGNEF 243

Query: 227 LFETVPRDINFEK----------MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           + E     +  +            +  +   +    ++       +  +    G+IKAL+
Sbjct: 244 VNENGYYKVEKQTDKVTGFVTPYWSHLSDPDKGEYTYLFNFNRDISTENKNDMGEIKALV 303

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             R   V  +++ +    +    +                  +  GI    N +    +E
Sbjct: 304 LARGDKVANYKDIVGLDGKTYDDTTGM---SVMLRAEAQMDQLFHGIATAINDILCPNTE 360

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                     N S        +   +     +
Sbjct: 361 ASNYITGLTGNGSVTMTDADGNTYTVTANTKI 392



 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 13/238 (5%)

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLI 298
            +   ++    +  +G V  ++             +   D        +L   E+   L 
Sbjct: 357 PNTEASNYITGLTGNGSVTMTDADGNTYTVTANTKILDADKCAVGSDGKLPPQELFTRLG 416

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                +      +      +     +D  +   Q    +  VN    ++ + L       
Sbjct: 417 TERYTEVSYTDPASGETKTYYLYNEEDPADTTKQYTMGSTSVNSALITDETLLPHLRQNG 476

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                           +     +                 +  +Y    IG +    +  
Sbjct: 477 DVDQS-----------LMATLAAVWDKESLTVNPNDTKAYSFKDYYAAMIGEVATYGNVY 525

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +            +       +GV+  EEL+++IK + +YN S++ I   ++M++ L+
Sbjct: 526 NSTATNLSQTVQSVDNQRQQVIGVSSDEELTYMIKYQNAYNASSRFINVINEMIEHLI 583


>gi|312882653|ref|ZP_07742390.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369614|gb|EFP97129.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 624

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/451 (12%), Positives = 149/451 (33%), Gaps = 23/451 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENV 50
           MS   +          A +Q  +   NI N +   Y R+  +                 V
Sbjct: 1   MS-SDLLTLGSQSVLTAQKQLNTTGHNISNVNTDGYSRQSVIQATETPRYHSGQTYGMGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V   R          L+  ++   ++   ++   +   M +           +++  D+
Sbjct: 60  HVEKVRRSWDQFAVSELNVSTTNYARKMDDETNLDMLSSMLSSISSKK-IPENLNEWFDA 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           ++S + + ++    + V++ A+ + QN N     ++     A+K+++L +  + +   E+
Sbjct: 119 VKSLADSPNDVGAREVVLEKAKLIAQNMNDVHETIRTQADIANKQLDLAVERVNQIGIEI 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFE 229
             ++  +    A     +D +D  + L+ ++SE   ++   R N +   V+  +G TL  
Sbjct: 179 RDLHRLMMRTHA---PHNDLMDTHEKLIAELSEYTKVTVTQRKNKEGFNVHIGNGHTLVS 235

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      + Y    +      +G  + +     +  GK  A+L +RD  +P   ++
Sbjct: 236 GTEASELRTI-DGYPDVHQHRLAMKEGKGLKAITTRDI-DGKFSAILSMRDEKIPQLMDE 293

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L  +A       ++      +     G  +       D          +       ++ +
Sbjct: 294 LGRLATTFSLQVNKLQSQGLDLNGNVGGLMF-----TDFNSDIVAKSRVVTASDSTADLA 348

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              +  S  K   ++++ + G   +     + F    I + +A     + + +   +   
Sbjct: 349 VYVEDISQLKGGEYSLQYVGGNYYVTRPSGEPFTVPVINNAIALDGIRIDIRQNLADGER 408

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
            + +   +              I+       
Sbjct: 409 VMIRPTRNGSAQMKVETNDARDIAAQSYEAS 439



 Score = 90.1 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/340 (10%), Positives = 98/340 (28%), Gaps = 3/340 (0%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
             ++ ++  +  +        + +  S+   +N  +     +  ++      R V     
Sbjct: 284 DEKIPQLMDELGRLATTFSLQVNKLQSQGLDLNGNVGGLMFTDFNSDIVAKSRVVTASDS 343

Query: 202 SEIIGIST---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
           +  + +           +  +    G         +     + +  +  +   I I   +
Sbjct: 344 TADLAVYVEDISQLKGGEYSLQYVGGNYYVTRPSGEPFTVPVINNAIALDGIRIDIRQNL 403

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
               +    P     A +++  +       Q  E +       ++ +     +     + 
Sbjct: 404 ADGERVMIRPTRNGSAQMKVETNDARDIAAQSYEASTTFAQGTAKFEISQVGALKEFEVI 463

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
           ++    +       G               +       +    L N K  A         
Sbjct: 464 VSPTGNEFAVTDTNGKVLLAPQPYPPSGPITVQGTSFVIGPGALPNDKFSANLVPSEGDN 523

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +      I       N   T+L+   N    +    S +  L   S++      E  ++
Sbjct: 524 GNLLKMQDIQTDKVLNNGESTVLDIFHNLNTDVGLQMSTASRLTDVSRLEKEAAQERVAS 583

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             GVNL EE + ++K +Q+Y  S++++  ++     +L  
Sbjct: 584 ISGVNLDEEAANMMKFQQAYMASSRIMQASNDTFNAILAL 623


>gi|332701538|ref|ZP_08421626.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551687|gb|EGJ48731.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 696

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/461 (11%), Positives = 124/461 (26%), Gaps = 22/461 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  ++    N   N          N+ NA+   Y RR                      +
Sbjct: 2   ISNLYYIGANALLNYQTAINVTGNNMANAETAGYSRRTVDFATRTTTDKYYGQVGNGSII 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  +      S+       + S     E +      ++  +  +  L    E
Sbjct: 62  QAIRRNYDSYLEDQYLGQSADSTYWSTVTSNCTAIESLF-VQVEDDGLSAVLDSLWTGFE 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   +         ++  AE +    N    +++      + EI  +++ +   L +L  
Sbjct: 121 ALPSDPGGTANRTELLGTAESLTGMLNDLYADMRSEEERMNAEIRDQVNEVNDILGQLAE 180

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           VN  +     +        D+R  LL  ++E + I TI + +  + V T +G TL +   
Sbjct: 181 VNKGLVAHPENA----GLQDKRSTLLTDLAEYVDIRTIEQEDGQITVQTLEGQTLVDGSK 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                 +    T +  +   F   V    +  + +   +I+ L     S           
Sbjct: 237 AYSFTVQGPRATASLTTTSGFDGAVYFEGSSNNEL---RIEFLTSGDTSGGAGAATFKVS 293

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    ++   +   +       +      +        S     N +     + + 
Sbjct: 294 TDGGNTWLSNDDGSVQTFTAGDIDHQVEVDGLSIWFGDSSDSSIPATTNIEAGDRFNVVP 353

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
             G    K   N+ N+       N          +      +      ++    S+ W  
Sbjct: 354 KTGVYWVKTTSNMVNVTPLEGASNRLSGGSLAGLLASRDEYLGEAQERMDALAASLIWEV 413

Query: 413 KNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNLQEELS 449
                        Q +             +  G++  E L+
Sbjct: 414 NYAHSQGAGLSHHQSLLGTYEAEYTDRALSESGLSFAERLT 454



 Score = 86.6 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/456 (8%), Positives = 115/456 (25%), Gaps = 12/456 (2%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
           +  +    T S    +        +   +  L       G           K      + 
Sbjct: 240 FTVQGPRATASLTTTSGFDGAVYFEGSSNNELRIEFLTSGDTSGGAGAATFKVSTDGGNT 299

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + ++    +         +   +    +      ++         +      +       
Sbjct: 300 WLSNDDGSVQTFTAGDIDHQVEVDGLSIWFGDSSDSSIPATTNIEAGDRFNVVPKTGVYW 359

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           ++   + +     E      +            ++L +    +  ++  +       ++ 
Sbjct: 360 VKTTSNMVNVTPLEGASNRLSGGSLAGLLASRDEYLGEAQERMDALAASLIWEVNYAHSQ 419

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID------------GVVVSSNQ 263
              +                     +  +         +             G+      
Sbjct: 420 GAGLSHHQSLLGTYEAEYTDRALSESGLSFAERLTGGSLSFALYDEDTGEALGITGVDFS 479

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
           G     G   +        +   ++ +++     + +    D +   +E+      A   
Sbjct: 480 GVVATDGNTYSTFDPSVHSLENVRDAINDTFPGQLTASITDDRLMLAAEDGYEFESAGDS 539

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
             L   L      T         NP  L + G V+   +     +            +  
Sbjct: 540 TGLLAGLGLNTFFTGDDLESIAVNPDLLANPGRVNSAHVNGAGEVNQGDGTTALALAALR 599

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              I       +   +L E     +  +  +++ +      S  +   + E   +  GVN
Sbjct: 600 DTEITLSTTDWSMQGSLSECLATLVSKVGGDKAMAKTNFEVSFALAQDLYERQQSVAGVN 659

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + EE+  L +++ +Y+ + KLI   ++M +T+L   
Sbjct: 660 VNEEVVNLTRLQDAYDAAAKLITTANEMFETVLSLK 695


>gi|332558508|ref|ZP_08412830.1| FlgE [Rhodobacter sphaeroides WS8N]
 gi|12057218|gb|AAF14370.2|AF133240_4 flagellar hook protein FlgE [Rhodobacter sphaeroides]
 gi|332276220|gb|EGJ21535.1| FlgE [Rhodobacter sphaeroides WS8N]
          Length = 423

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 106/483 (21%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
             N A +  + A    A+   NI N     +            +      R         
Sbjct: 2   SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      + A  + +      Q F A +  +  +                + E  +
Sbjct: 62  LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L    +    + +     SA  +              ++      ++  ++  
Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDNAMLGR 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A+  D  D                   T       + ++ + G  +        
Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                     T  +  + + G                          +   Q  L     
Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                         ++                +     +  T           + +   G
Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDG 302

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        + +G   +   Y            +        L +   +  G+     
Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  I         V+L EEL  LI  +++Y  S K +  ++ ++QT+
Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418

Query: 476 LEG 478
           +  
Sbjct: 419 MNI 421


>gi|309388826|gb|ADO76706.1| flagellar hook-basal body protein [Halanaerobium praevalens DSM
           2228]
          Length = 548

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/548 (8%), Positives = 124/548 (22%), Gaps = 70/548 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +  N+  Q       NI N +   +                     +    
Sbjct: 1   MLRSMYAGVSGLNSHQQMMDVTGNNISNVNTVGFKSSRVTFKEMLSQTIRGASAPQENRA 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                S  +             +        +            
Sbjct: 61  GTNPQQVGLGVGVGSIDSDMSSGNLQSTGKTSDVAIQGDGFFVLRDGSTEVYSRAGNFNF 120

Query: 110 SLES-YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN------ 162
             +     + +  ++     +   E       +     +++ + + E   +++       
Sbjct: 121 DEQGRLYSSSTGMLVQGWTANENGEYNNGLTRNNLGDIQLKQEINAEATDKVNFAKNLKA 180

Query: 163 --LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +         +  +    T    + +  ++  D         +          D    
Sbjct: 181 NIINDLGIVQGSMQVSDGATTPVTDNINFSMEPVDGSHNVWEYTLKSDDPTTTFTDPTPT 240

Query: 221 T----SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           T      G  + E                   +N    D +              +    
Sbjct: 241 TTTGEYTGQIVLENDGSIDTASSDVDNLTVDINNSGNTDTLNFDDTIKLDKDGESLITNG 300

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                 +   Q    +++  +  S   K  +    E +           L+       + 
Sbjct: 301 TGESIDLSYQQTAKRDVSINVFDSQGGKHSVLLPIEKIDNNTWEIDETKLEIDGNTLTTP 360

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG----YPDLINHYCDSFNKNFIFDPVA 392
               +    ++   +  G +V   F      ++         +  + D  +     D + 
Sbjct: 361 LGGNHEIKFNDSGEILSGETVDLTFTPAGPGVSQTVELDFSAMTQFADGGSLETNSDGMT 420

Query: 393 GINTN------VTLLEYARNSIGWL----------------------------------E 412
              ++       +L  ++    G +                                   
Sbjct: 421 ANFSSVNGYEAGSLESFSFTETGDIVGSFSNGLTQIQGKIAMANFANPAGLSRQEGVFEA 480

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + S    +   +Q  F  ++ S       NL +E + +I  ++ +  ++KLI  +D+ML
Sbjct: 481 TSNSGEAGIGEPAQGGFGSLAPSTLEMSNANLSQEFTNMITAQRGFQANSKLITTSDEML 540

Query: 473 QTLLEGVK 480
           Q L+   +
Sbjct: 541 QELVNLKR 548


>gi|56551501|ref|YP_162340.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543075|gb|AAV89229.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 458

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/490 (14%), Positives = 152/490 (31%), Gaps = 47/490 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +  +     +   N  +    I  N+ NA    Y RRD                  +S  
Sbjct: 1   MSDILQIGASGVLNYGKAIDVIGENVSNASTTGYARRDVSLIEAPNGGSGILGLNQVSGN 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            VT  +            +   +S  G+   +  + +  E               ++   
Sbjct: 61  GVTTQSVTRAWDGFAATHVRNTASDAGEASAVSRWMSSAETALNSGDTGTD--SELTSFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            SL + + N +        I    +  +  + SA  ++ +      E +  +S +   L 
Sbjct: 119 TSLTTLASNPTNATQQAASISALNDSAKAISYSASNLKNVSDGIKDEADGSVSVINSDLK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  VN AI    +    A    DQRD LL  +S  IGI+  + +N  + +  S  +   
Sbjct: 179 TLAKVNAAIIRTPSGTDSAAGLADQRDQLLDDLSSKIGINADIASNGTVKITLSGTSNGQ 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             +      +   S+T + +S+     GV  + N  +                      +
Sbjct: 239 TLLSSTAAGQMAGSFTASMDSSGKLTIGVKDALNSNNNRDMSNSAG----------GSLS 288

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  +A  +    S  +  A +       + + G                          
Sbjct: 289 GLVTVASTVADERSSLNSAASDFVTQVNAWNSQGTTPSGAAGG----------------- 331

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
               D  +++      +         I     S     + +  + +  +  +       +
Sbjct: 332 ----DLLAITDGDATTIATTTSDGSKIASANSSSPNGNLQNVSSALRGSNGIEANYATLV 387

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
               +  S +      ++ ++N  +++  +  GV+L  E + L++ +Q+YN S K++   
Sbjct: 388 SNNAQATSSAATNATNTKNLYNTAAKTRDSLSGVDLSTEAAQLLRYQQAYNASAKILQTA 447

Query: 469 DKMLQTLLEG 478
              +Q +LE 
Sbjct: 448 QTTMQAILEL 457


>gi|241761145|ref|ZP_04759234.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374764|gb|EER64225.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 458

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/490 (14%), Positives = 152/490 (31%), Gaps = 47/490 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +  +     +   N  +    I  N+ NA    Y RRD                  +S  
Sbjct: 1   MSDILQIGASGVLNYGKAIDVIGENVSNASTTGYARRDVSLIEAPNGGSGILGLNQVSGN 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            VT  +            +   +S  G+   +  + +  E               ++   
Sbjct: 61  GVTTQSVTRAWDGFAATHVRNTASDAGEASAVSRWMSSAETALNSGDTGTD--SELTSFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            SL + + N +        I    +  +  + SA  ++ +      E +  +S +   L 
Sbjct: 119 TSLTTLASNPTNATQQAASISALNDSAKAISYSASNLKNVSDGIKDEADGSVSVINSDLK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  VN AI    +    A    DQRD LL  +S  IGI+  + +N  + +  S  +   
Sbjct: 179 TLAKVNAAIIRTPSGTDSAAGLADQRDQLLDDLSSKIGINADIASNGTVKITLSGTSNGQ 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             +      +   S+T + +S+     GV  + N  +                      +
Sbjct: 239 TLLSSTAAGQMAGSFTASMDSSGKLTIGVKDALNSNNNRDMSNSAG----------GSLS 288

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  +A  +    S  +  A +       + + G                          
Sbjct: 289 GLVTVASTVADERSSLNSAASDFVTQVNAWNSQGTTPSGAAGG----------------- 331

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
               D  +++      +         I     S     + +  + +  +  +       +
Sbjct: 332 ----DLLTITDGDATTIATTTSDGSKIASANSSSPNGNLQNVSSALRGSNGIEANYATLV 387

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
               +  S +      ++ ++N  +++  +  GV+L  E + L++ +Q+YN S K++   
Sbjct: 388 SNNAQATSSAATNATNTKNLYNTAAKTRDSLSGVDLSTEAAQLLRYQQAYNASAKILQTA 447

Query: 469 DKMLQTLLEG 478
              +Q +LE 
Sbjct: 448 QTTMQAILEL 457


>gi|217034660|ref|ZP_03440065.1| hypothetical protein HP9810_901g7 [Helicobacter pylori 98-10]
 gi|216942868|gb|EEC22359.1| hypothetical protein HP9810_901g7 [Helicobacter pylori 98-10]
          Length = 606

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/484 (12%), Positives = 135/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + ++   E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALVQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVIKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  A+ LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHHIEGEPVEFNNDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 125/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T+ ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVIKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAK 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNNDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVISTIDRMIDTLLGIKQ 606


>gi|22127327|ref|NP_670750.1| flagellar hook protein FlgE [Yersinia pestis KIM 10]
 gi|45442796|ref|NP_994335.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809055|ref|YP_652971.1| flagellar hook protein FlgE [Yersinia pestis Antiqua]
 gi|108810748|ref|YP_646515.1| flagellar hook protein FlgE [Yersinia pestis Nepal516]
 gi|145597817|ref|YP_001161893.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F]
 gi|150260249|ref|ZP_01916977.1| lateral flagellar hook protein [Yersinia pestis CA88-4125]
 gi|162421081|ref|YP_001604847.1| flagellar hook protein FlgE [Yersinia pestis Angola]
 gi|165924960|ref|ZP_02220792.1| flagellar hook protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939066|ref|ZP_02227618.1| flagellar hook protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008888|ref|ZP_02229786.1| flagellar hook protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211930|ref|ZP_02237965.1| flagellar hook protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399572|ref|ZP_02305096.1| flagellar hook protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419268|ref|ZP_02311021.1| flagellar hook protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425161|ref|ZP_02316914.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167466340|ref|ZP_02331044.1| flagellar hook protein [Yersinia pestis FV-1]
 gi|218927912|ref|YP_002345787.1| flagellar hook protein FlgE [Yersinia pestis CO92]
 gi|229837408|ref|ZP_04457571.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A]
 gi|229840621|ref|ZP_04460780.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842828|ref|ZP_04462980.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900945|ref|ZP_04516069.1| Flagellar hook protein flgE [Yersinia pestis Nepal516]
 gi|270487673|ref|ZP_06204747.1| flagellar hook protein FlgE [Yersinia pestis KIM D27]
 gi|294502788|ref|YP_003566850.1| flagellar hook protein [Yersinia pestis Z176003]
 gi|21960408|gb|AAM87001.1|AE013948_9 putative flagellar hook protein [Yersinia pestis KIM 10]
 gi|45437662|gb|AAS63212.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774396|gb|ABG16915.1| flagellar hook protein [Yersinia pestis Nepal516]
 gi|108780968|gb|ABG15026.1| putative flagellar hook protein [Yersinia pestis Antiqua]
 gi|115346523|emb|CAL19399.1| putative flagellar hook protein [Yersinia pestis CO92]
 gi|145209513|gb|ABP38920.1| flagellar hook protein [Yersinia pestis Pestoides F]
 gi|149289657|gb|EDM39734.1| lateral flagellar hook protein [Yersinia pestis CA88-4125]
 gi|162353896|gb|ABX87844.1| flagellar hook protein [Yersinia pestis Angola]
 gi|165913022|gb|EDR31647.1| flagellar hook protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923160|gb|EDR40311.1| flagellar hook protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992227|gb|EDR44528.1| flagellar hook protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206676|gb|EDR51156.1| flagellar hook protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963262|gb|EDR59283.1| flagellar hook protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167052076|gb|EDR63484.1| flagellar hook protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055924|gb|EDR65705.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229682284|gb|EEO78376.1| Flagellar hook protein flgE [Yersinia pestis Nepal516]
 gi|229690095|gb|EEO82152.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696987|gb|EEO87034.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705531|gb|EEO91541.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A]
 gi|262360820|gb|ACY57541.1| flagellar hook protein [Yersinia pestis D106004]
 gi|270336177|gb|EFA46954.1| flagellar hook protein FlgE [Yersinia pestis KIM D27]
 gi|294353247|gb|ADE63588.1| flagellar hook protein [Yersinia pestis Z176003]
 gi|320016711|gb|ADW00283.1| Flagellar hook protein flgE [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 413

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/477 (11%), Positives = 117/477 (24%), Gaps = 72/477 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
            F+ A    N  ++Q  +I  NI N+  K +    T  +       P  V V        
Sbjct: 2   SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              D         +        F  ++E         +         R  ++ Y  N   
Sbjct: 62  K--DGQKEKTGMGLDLAISGGGFFVVRE------SSGDKAYTRAGMFRSDVDGYLVNGQG 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L     D A  +     +                +L+I+N          ++      
Sbjct: 114 MKLQGYPADAAGNIQAGIIS----------------DLKINNAGVPAKASEQLDFMANLN 157

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            +    +    +  +      +    +   +   + +  Y    TT          +   
Sbjct: 158 ASVTAPSVSVFNPTNEKSYNFTTTSTVYDSLGREHAVAHYFVKSTTPPAGSVAS-EWAVH 216

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++    + + P+ +      +        G                              
Sbjct: 217 HTVDGGTATPPLTLQFTDTGALIPGIPAAGS----------------------------- 247

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                G  +        I        Q     +  R+       
Sbjct: 248 -----------GMKGSAINLHGTFNPAGAADYDIDIDYTGTTQLSQGFTTTRNKSDGYTS 296

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
            + N + +     +   + +          +A   +   L+   +N   W E N+S +  
Sbjct: 297 GVKNAERIESDGSVYATFSNGERVLQGKVVLANFASPSGLVT--QNGTSWSESNKSGAAL 354

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           L      +   +         V++  EL  L+  +++Y  S K+I   D M+  L +
Sbjct: 355 LGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMMNALFQ 411


>gi|283852232|ref|ZP_06369505.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B]
 gi|283572458|gb|EFC20445.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B]
          Length = 518

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/519 (10%), Positives = 134/519 (25%), Gaps = 45/519 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
                  +   + SQ  A+   N+ N +   Y     +       +   T  + ++    
Sbjct: 2   TAIWTGVSGMLSYSQGIANTSNNLANTNTVGYKSSRMLFADMISELAGSTTDTNSQIGMG 61

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSA--------DDHYNNSPTHYISKLRDSLESYSK 116
             +   S + G   +    +++   +          D   + +          + + Y  
Sbjct: 62  VQVGTVSMSTGVGAIATGDQSMDMAIDGEHGYFTVKDPVSDKTYYTRAGDFNFNTDGYLV 121

Query: 117 NLSEDILGKTVIDNA-------EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + + + +    +D A          V        +   IR            ++    + 
Sbjct: 122 SPTGNRVQGWAVDQAAVTQAERTGSVLPEVPVTGDPTDIRITDFTLPAQATGSVSMITNL 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-------NDMVVYTS 222
            ++ +  I   T          D  +      +    I              N   V  +
Sbjct: 182 DSLTDPGILDATDPYCSMFKSYDAANTPPATAAYTSDIKVYDAEGGAHSLTVNYSKVTDT 241

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV------------VVSSNQGSAVPKG 270
            G   +E +      +  +S T  +    + + G                +  G      
Sbjct: 242 GGKEYWEYMVTVPPADDGSSVTGGTSKAGVLMIGTLTFSAQGVLENQTAFTPTGGDPTDL 301

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD--- 327
                  +  + VP        ++   + S        G S +             D   
Sbjct: 302 SSWTQAPLDSTGVPQMSATFKSVSNGSVLSSQTMGFKTGLSASGASWNPNGPSSAADIGT 361

Query: 328 ------NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                           +     Y ++                N  ++     +   + + 
Sbjct: 362 LAAANAGFDPSSTRNAVACTTSYATSSYTQAQSQDGFASGTLNSTSVDENGVVSGTFSNG 421

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             K+     +A       L     N +       S +      +  +++ IS     +  
Sbjct: 422 QTKDLYVLALADFRNPTDLRREGNNLLS--ATTESGAATTGRANSGIYDGISGYSLESSN 479

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V++  E+  LI +++++  ++K++   D M++  LE  K
Sbjct: 480 VDMATEMVNLITLQRAFQSNSKVVTTADTMMEKALEIKK 518


>gi|238782798|ref|ZP_04626827.1| Flagellar hook-associated protein [Yersinia bercovieri ATCC 43970]
 gi|238716221|gb|EEQ08204.1| Flagellar hook-associated protein [Yersinia bercovieri ATCC 43970]
          Length = 544

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/545 (13%), Positives = 161/545 (29%), Gaps = 75/545 (13%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQR 56
            N AQ+  ++A      +  N+ NA    Y R+  M   +             V V   +
Sbjct: 1   MNLAQSGLSSAQAALNVVGNNLNNAMTAGYSRQSIMLGQAGGRTTNVGFFGYGVQVDGVQ 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                  +  L +  +         +  +  + M  DD   N+ +  ++ +  +LE  S 
Sbjct: 61  RAYDGFINNQLRSAVTDFSALTSRHNQLSQIDNMFGDDT--NNISVSMNNIFTALEKMSS 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +       +  +     +   FN+++R +  +    + +I   ++++   + +L  +ND 
Sbjct: 119 DPVSPAARQGALSQFRAISSQFNSNSRTLNGLEKSTNTQINQTVNDINANVKQLAKLNDE 178

Query: 177 IKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVPRD 234
           I      +     D LDQRD+LL+++S  +GI          + V  ++G  L       
Sbjct: 179 ITKIHGQTGGLPADLLDQRDMLLEQLSGAVGIRVNEDTTTGRVNVTLTNGMQLVNGNRAY 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 ++   +                  S +  GK+  L + R+  +   +NQL+++A
Sbjct: 239 ELETSSSAEDPSKTVVSYIDASGNKMQLNESTMTSGKLGGLFKFRNEDLVDARNQLNQLA 298

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +   F+E +    + +  PG  I +    +        S+          +     D 
Sbjct: 299 LQMANKFNEVNAAGYDLDGNPGGDIFNIANPVALANRNNASDATLDISFTDISQVKAEDY 358

Query: 355 GSVSKKFLWNV--KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
               K    N      +    +      +    F    +    T      +  N    + 
Sbjct: 359 TLTYKGPGQNDWEVKTSDGRTITPTIGAAGELEFDGISITPQGTPEPNDSFVLNPTSGIA 418

Query: 413 KNRSDSHDLHM------------------------------KSQVVFNHISESYSNTVGV 442
            + + +                                              S  ++VG 
Sbjct: 419 GSLNVAITQGDEIAASSSSDPSDVSNNENIKEMIAIKDATLIGNGTLTEAYASLVSSVGS 478

Query: 443 NLQ-----------------------------EELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           ++                              EE   L    Q +N + K++     +  
Sbjct: 479 SMTALKSDVTTGGNVLEAVALQQQSVIGVDLNEEYMRLEMYSQYFNANTKVLQTATTLFD 538

Query: 474 TLLEG 478
           TLL  
Sbjct: 539 TLLSI 543


>gi|90415312|ref|ZP_01223246.1| flagellar protein [marine gamma proteobacterium HTCC2207]
 gi|90332635|gb|EAS47805.1| flagellar protein [marine gamma proteobacterium HTCC2207]
          Length = 1001

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 113/354 (31%), Gaps = 13/354 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + +          Q  +++  NI N + + Y R+ + T+ +               +
Sbjct: 1   MADILSIGAGATQLYRQALSTVSNNIANLNTEGYSRQVSETSENAPSQQGTVFVGSGARL 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +  L    S +  Q+ L  +      +   +      +  + K   +  
Sbjct: 61  DNIARAYDEFAESSLRDSGSQLSNQQPLIDYANRVVDIMGSEAS--GLSSAMDKFFAAAS 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S + +   L  + + +AE +   F   + ++  +  +  + IE +++ L     +L  
Sbjct: 119 AVSADPASINLRSSFLRDAEGMASRFRELSDQLGAVELETRESIESQVNQLNNLSEKLAF 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           VN  +  K          LDQRD LL+++S I  I      +  + V  +          
Sbjct: 179 VNKQLNKKLTLSSQPPMMLDQRDQLLREMSAITKIHVTEVTSGQVTVRLASSA-GSVITD 237

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             +++E   S+          I      S   S V  G++  L+  R   +    +  D 
Sbjct: 238 DKLHYELGVSFDDNDPGRVDLIIEPYGDSRVASTVTNGELGGLMNFRSQTLAPAMDSFDF 297

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +A+ L+   ++      +     G  +     D       G +           
Sbjct: 298 LAQTLVAEINQIHSAGLDGRGEAGGDLFAIDLDFTVSAPAGNANAAIAIEVTSG 351



 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/410 (10%), Positives = 105/410 (25%), Gaps = 5/410 (1%)

Query: 69   AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
            + ++++                S      ++    ++    +            +     
Sbjct: 596  STNTSLSATATSADVSLQSNDSSVTVDLISANALVLNDYSMAALELEAGAVSSAVLMATW 655

Query: 129  DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
             NA         +A  +  I  D   +   +++     +   T +    +   A      
Sbjct: 656  INAATDSTGVTATATNLITIEED-SIDFTQQVNINGVLIGNGTPLTSVRELANAINEQTD 714

Query: 189  DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                  ++      EI         N  +    S  +         I   ++        
Sbjct: 715  STNVMANITYDGKLEITNARGYDGENITLSNPDSTSSDNALGQSNKIFVGQLQLEADEEI 774

Query: 249  SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
                  DG+              ++  +    +V     +     A        E    A
Sbjct: 775  RFTFGDDGLPKDLAVLGLRTGIYVEGTVTQDLAVFVTGTDSGRVAAGFSTTDSDEVAASA 834

Query: 309  GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                 +      +             + +             L   GS       ++  +
Sbjct: 835  AAPFIIEFTSATEYTITDTATGTLVATRSYSEGQDIAHKGFTLALEGSPVA---GDLFVV 891

Query: 369  AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                D I    +  N   + D     + + TL E   N +  +    + +       QVV
Sbjct: 892  DSNKDGIGDNGNMLNLVALQDKELMADGS-TLGEAYINLVNGVGSKAALAMMSKEALQVV 950

Query: 429  FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            ++    +     GV+L +E   LI+ +Q+Y  S ++I    K+  ++L  
Sbjct: 951  YDQAVAAKDQVSGVSLDQEAGELIRFQQAYQASAQIIQVASKLFDSILSI 1000


>gi|188527901|ref|YP_001910588.1| flagellar hook-associated protein FlgK [Helicobacter pylori Shi470]
 gi|188144141|gb|ACD48558.1| flagellar hook-associated protein FlgK [Helicobacter pylori Shi470]
 gi|308062395|gb|ADO04283.1| flagellar hook-associated protein FlgK [Helicobacter pylori Cuz20]
          Length = 606

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606


>gi|154175384|ref|YP_001408368.1| flagellar hook-associated protein FlgK [Campylobacter curvus
           525.92]
 gi|112802604|gb|EAT99948.1| flagellar hook-associated protein FlgK [Campylobacter curvus
           525.92]
          Length = 623

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 123/408 (30%), Gaps = 39/408 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +    N   +  N A  Q ++   NI NAD+  Y R+  + + S               V
Sbjct: 4   IFMSLNTGVSGLNAAQTQISTTGNNIANADSAYYTRQRVVQSASPAMNTVPGGVGTGTQV 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T +  +       L   SS +      Q            D  +      I +   +  
Sbjct: 64  DTVKRIHDEFTYSRLKTASSNLENTAYKQRILQEVTKYF-PDLNDKGMIKDIQEYFGAWN 122

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            ++ N  E      +++ A  +  N + SA+ +  ++   D+ I++ I  +     ++  
Sbjct: 123 DFASNPDEGSQKVNLLNKASVLTSNLSQSAKTLYALQTKVDETIKINIKEINSLAKQIAN 182

Query: 173 VNDAIKFKTASKH-----DAHDFLDQRDVLLQKISEIIGI-----------STIVRNNND 216
           +N  I+   A        +A+D  D+RD L   +S+++ +           +      + 
Sbjct: 183 LNAQIQRVEAGADAGIKINANDLRDKRDELELAMSKLVNVSSFKSDLKSDATVDTGITDQ 242

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
              YT +   +      + +   M+S      +   +             +  GKI A L
Sbjct: 243 GKFYTLNIGGVNIVDGPNYHELSMSSTDTGEFTKIYYEREDGKRIPMEDKITNGKIGASL 302

Query: 277 QIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
            +R            D  +  + + LD  ++ LI S +     +    +           
Sbjct: 303 DLRGRNYDVKEQKFTDGAIQKYIDNLDTFSKTLINSTNNIYAESAVERSNSDEISYLEDD 362

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                    I E I     Y +  + +                  G  
Sbjct: 363 KTLMNFSNSIREGIFEAVVYDNKGNVVARKTININGTTTMNDTTYGNS 410



 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 104/384 (27%), Gaps = 5/384 (1%)

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               K           +      +  + + +          RE  K     DK    +I 
Sbjct: 240 TDQGKFYTLNIGGVNIVDGPNYHELSMSSTDTGEFTKIYYEREDGKRIPMEDKITNGKIG 299

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      V +      A +    +       L+   + I   S + R+N+D + Y 
Sbjct: 300 ASLDLRGRNYDVKEQKFTDGAIQKYIDNLDTFSKTLINSTNNIYAESAVERSNSDEISYL 359

Query: 222 SDGTTLFETVPRD----INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
            D  TL                 ++         I I+G    ++               
Sbjct: 360 EDDKTLMNFSNSIREGIFEAVVYDNKGNVVARKTININGTTTMNDTTYGNSIVSDFNSDS 419

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
             ++   +  +  D          +                 +  + D        +   
Sbjct: 420 DDNNDNNMLNDVNDYFQASYDYDKTTNKGTFSLIPKQAQGLYSISLVDKGTNFPGVVGVN 479

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INT 396
                    +     D      K     K + G  ++ N           F      ++ 
Sbjct: 480 RFFKGTDAKSIGVNNDFVQDHTKIRAYSKPVVGNNEVANKMVQLQYTKQTFYSNGTALDR 539

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
           + T+  Y R     +  +   ++  H  +  +     E + +  GV+  EEL+ LI+ + 
Sbjct: 540 DETIEGYYRYFTTDIASDTEANNTTHDTNTALQKTAEEEFQSISGVDTNEELTNLIRFQA 599

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           SY  + K+I   D+ML TLL   +
Sbjct: 600 SYGAAAKIITTVDQMLDTLLTLKQ 623


>gi|15895480|ref|NP_348829.1| flagellar hook-associated protein FlgK [Clostridium acetobutylicum
           ATCC 824]
 gi|15025209|gb|AAK80169.1|AE007721_9 Flagellar hook-associated protein FlgK [Clostridium acetobutylicum
           ATCC 824]
 gi|325509627|gb|ADZ21263.1| Flagellar hook-associated protein FlgK [Clostridium acetobutylicum
           EA 2018]
          Length = 634

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/415 (13%), Positives = 115/415 (27%), Gaps = 28/415 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L    N   +      Q       NI NA    Y R+                      
Sbjct: 3   GLFGTLNIGVSGLTVNQQAIDVTGHNISNASTDGYSRQRVDIQTRSPYGMPSLNSAAGPG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V + +    +  D  +   ++  G  +   ++ +  E M  +           
Sbjct: 63  LFGTGAEVYSVQRVRDSFLDYQIRDLTTRNGTFKTTNNYLSEVESMFDESSSAGISASIT 122

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +         + + +     K++I NA+ +    N    ++ K++ D    I  +I ++ 
Sbjct: 123 TFFSAIQNYTNASSATPTSIKSIISNAQTMTNQLNNIYTQLTKLKGDVQLGINDDIISVN 182

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  +N  I     +  + +D  D RD+LL ++SE  GI+     + D      D 
Sbjct: 183 SMLDKIDSLNQQIITVKQAGKEPNDLEDSRDLLLDQLSEKFGINVDSSPDFDG----EDV 238

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           + L +    +    K       +  + I        +         K  A  +I    V 
Sbjct: 239 SVLDKVGNVNPTLVKSVGNDNVNRFSYIDAVVKGTDTGS-------KNGAGEEIYSYEVD 291

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            ++      +   I                  + + D      +            +   
Sbjct: 292 YYKLGNKASSDNRIKLNINMTESQAKEIEQARVLMTDKNGIALSSADGKTKLDGTASSYN 351

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            S+ S  +  G            + GY D +N    +            +N   +
Sbjct: 352 FSDLSLFKPVGGDINGEQTVQDKINGYIDQMNRVAKTIALAINTVSSGMVNPTQS 406



 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 105/399 (26%), Gaps = 4/399 (1%)

Query: 80  LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139
            +    L ++ + +     S  +        +++  K            +     V  + 
Sbjct: 235 GEDVSVLDKVGNVNPTLVKSVGNDNVNRFSYIDAVVKGTDTGSKNGAGEEIYSYEVDYYK 294

Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
              +     R   +  +    +        L    + I   +A      D          
Sbjct: 295 LGNKASSDNRIKLNINMTESQAKEIEQARVLMTDKNGIALSSADGKTKLDGTASSYNFSD 354

Query: 200 -KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
             + + +G            +               +    ++S  V    + +  DGV 
Sbjct: 355 LSLFKPVGGDINGEQTVQDKINGYIDQMNRVAKTIALAINTVSSGMVNPTQSQLASDGVH 414

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
            + +                 ++     +   D                AGN    P L 
Sbjct: 415 STPSLDELPIFVNSDFTKDASNTTFKPSKYFNDTTNSGKNWEDY---ITAGNISINPDLL 471

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
             +    +     Q    +             +         F     N   Y       
Sbjct: 472 GTNPSLKVRANDDQYGLPSENAVNGSTDQDRAIALAKLQKVAFKIQDVNPDNYTRSDFAK 531

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
               + +   + +      VT+ +Y ++ +  L  +   + +    S  V + I ++   
Sbjct: 532 TLVKDTDTGVNTIKSDPDGVTVDDYLKSFVNTLGIDNQSASEGVKGSNNVLSQIKQTREA 591

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           T GV+L EE++ LI+    Y  S K+I   D++L  ++ 
Sbjct: 592 TSGVSLDEEMTNLIQYSHGYQASAKIISTVDQLLDVVVN 630


>gi|238927685|ref|ZP_04659445.1| flagellar hook-associated protein 1 [Selenomonas flueggei ATCC
           43531]
 gi|238884401|gb|EEQ48039.1| flagellar hook-associated protein 1 [Selenomonas flueggei ATCC
           43531]
          Length = 579

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 124/385 (32%), Gaps = 18/385 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------------VTVVTQR 56
                N      +   NI NA  + Y R+   +  +                 V VV   
Sbjct: 2   VRGIQNNQLSLDTTGHNITNASTEGYSRQRVDSAATNYQERPSLYGGVYVGGGVDVVALN 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                  DK   + SS     +  ++     E +  +D         + +   +  + S 
Sbjct: 62  RARNIYADKQFWSESSTQTLYKTYKTNYDKAEAVF-NDAKETGVLDAMKQFYSAWVNLSD 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S+      V+     +V    T AR++Q        E+ ++++       ++ V+N  
Sbjct: 121 YASDAASRTAVVQKGNNLVDRIKTGARQLQDQINAQYDEMRIQVNKANSITEKIAVLNKN 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I     +   A+D  DQRD+L+ K+SEI  ++          V  S+G TL +    ++ 
Sbjct: 181 IMLAETNGGKANDLRDQRDLLVDKLSEITNVNVYEDATGQYTV-VSNGMTLVQR-DSNLT 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            E              +   +  +   G     G +KAL          + + L +++  
Sbjct: 239 IEMSPPINNERYGINDYTLRIKEAGGMGYVPQGGVLKALQDTIVQD-KKYIDNLADISAT 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L+ +F++   +    +N    +     ++  +    G + T      +    +  R   +
Sbjct: 298 LMTTFNDVHKLGAGIDNDATTWTNFFGRNAFHSDATGNNYTGERYVWHVDPTTGDRWMTA 357

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDS 381
            ++               ++    +
Sbjct: 358 TAQGVTRTATATGATVTAVDTSNAA 382



 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/450 (9%), Positives = 114/450 (25%), Gaps = 11/450 (2%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            R   +   +     + T   + ++  +         + +   +    A+          
Sbjct: 127 SRTAVVQKGNNLVDRIKTGARQLQDQINAQYDEMRIQVNKANSITEKIAVLNKNIMLAET 186

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           N    + +   RD L      ++   + +        V     T  +    +  +    I
Sbjct: 187 NGGKANDLRDQRDLLVDKLSEITNVNVYEDATGQYTVVSNGM-TLVQRDSNLTIEMSPPI 245

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             E   +  +   +                     D      + I  +  IS  +    +
Sbjct: 246 NNERYGINDYTLRIKEAGG--MGYVPQGGVLKALQDTIVQDKKYIDNLADISATLMTTFN 303

Query: 217 MVVYTSDG--------TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
            V     G        T  F       +    N        +     G    +     V 
Sbjct: 304 DVHKLGAGIDNDATTWTNFFGRNAFHSDATGNNYTGERYVWHVDPTTGDRWMTATAQGVT 363

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +        +         +  +  +  +I +    D +                    +
Sbjct: 364 RTATATGATVTAVDTSNAADIHEMRSMQIIKALKVSDELTAQGGQNLVAARQIQNPAPIS 423

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                      V+P   +      +    +   +    +     D  N    +       
Sbjct: 424 PTNPIGKVLPTVSPGTITYTYTFANMNGTADGTMAVELSKFFNMDQGNTINVAKLIGLPA 483

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           +        V++ +Y    +  L  +  + +    +   +   I++   +T GV+  EEL
Sbjct: 484 NECERAVGTVSINQYYNGVMNKLGADAENLNKKMKQQDDLMVQITQWRQSTAGVDWNEEL 543

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S ++K +  Y   ++++   D++L  L+  
Sbjct: 544 SNMLKFQTGYGACSRVLTSMDEILDRLINS 573


>gi|225850267|ref|YP_002730501.1| flagellar basal body and hook protein FlgE [Persephonella marina
           EX-H1]
 gi|225644919|gb|ACO03105.1| flagellar basal body and hook protein FlgE [Persephonella marina
           EX-H1]
          Length = 540

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/553 (9%), Positives = 127/553 (22%), Gaps = 88/553 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++  F       N      + I  NI N +   +                          
Sbjct: 1   MIQSFYTGNAGLNANKNWLSVISDNIANVNTIGFKAERVNFEDLISSSLTTFANNSPKNM 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V +      +     L   ++        + F  +++        + +     
Sbjct: 61  EIGGGSFVGSTTK---DFSQGALMNTNTPTDLALDGEGFFMVRDA------QDVTYYTRA 111

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI---------------- 148
            + R        NL+   L    +D+A  +                              
Sbjct: 112 GQFRTDANGDLINLNGMKLLGWQLDDAGNIAGAIGAINIPNDMPPHVTTKLALKEPTNLD 171

Query: 149 -----------RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD----- 192
                       +DA     +    +   L               ++      +D     
Sbjct: 172 AGSELVTGVFDTSDARTYSYVNAITVYDSLGVPHEAQLYFVHTGPNQWRVFGLMDDEPIQ 231

Query: 193 --------QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                     D L+ + + +  I+ +     +     +   T  E+              
Sbjct: 232 FNVPGDANTYDALVVEFNGVGQINRVFGYGINTDQTITGAGTETESGDLGQFTLNNTPVL 291

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
             S     + DG    +        G I  L      V  I  +          G+ + +
Sbjct: 292 PGSVVITQYTDGATTYNVNWIDDGHGNIIDLNNDNRVVGSISYDDGTVFINQFAGNGATE 351

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-----------------N 347
              AG+ +        + I      +                                 +
Sbjct: 352 TLTAGSYKTYDTTVSTNTIPPDSISIVPIPVNNPNSATLNTGGNPIQFTLDIQNMKQVES 411

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                       K      +++    +   Y +   K++    +A  N    L+    N 
Sbjct: 412 EFIFYAEQDGYAKGDLLSVSVSEDGLVRGVYSNGQVKDWARIAIATFNDKEILIRKGNNL 471

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                   S ++   +    V + I   +     V++  E   LI  +++Y  + + I  
Sbjct: 472 F----LPNSQTYTPIIVPGGVISKIRGGFLELSNVDISREFINLITAQRAYQANARTITT 527

Query: 468 TDKMLQTLLEGVK 480
           +D++LQ  +   +
Sbjct: 528 SDQVLQETMNIKR 540


>gi|299531286|ref|ZP_07044696.1| flagellar hook protein FlgE [Comamonas testosteroni S44]
 gi|298720693|gb|EFI61640.1| flagellar hook protein FlgE [Comamonas testosteroni S44]
          Length = 422

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/483 (9%), Positives = 113/483 (23%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            F +  +  N AS+    I  NI N++   +                      +   V  
Sbjct: 2   GFQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            S ++      + +  + +        F  +K+         +             E   
Sbjct: 62  ASVSQQFRQGSITSTGNNLDIAINGNGFFVVKQ------SDGSIAYTRAGNFGLDKEGNL 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           K +  D +   V+D +   +Q+  T              +   +++      +  T    
Sbjct: 116 KTVDNDNVMGYVVDPSTGKIQSGATPVPMSFPTGQPIPAKQTSKVNVELNLDARATAAAG 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                                +       I ++     +      T +   +F ++    
Sbjct: 176 DATATPPVAATPRATYGTSLNVYDTQGTAIPVNLYFEKD-----ATGNTWNVFNSLDATA 230

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                  +  + +   +  +     S                                  
Sbjct: 231 TPIGKAVFDASGKLTSVTPNAPTTGSGTT------------------------------- 259

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                L ++ G  + +      ++       Q+ +  +      
Sbjct: 260 -------------------LNLSVSGGTANPNGLQPFDVAFDFGGLTQFGTKFAVSSLKQ 300

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N+     ++  Y +   +      +A       L     N   W+  + 
Sbjct: 301 DGYTSGALTGINVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNK--WVATSD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  +         V+L  EL  ++  ++SY  + + I   D++  TL
Sbjct: 359 SGPALNGSAQTGTFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTL 418

Query: 476 LEG 478
           +  
Sbjct: 419 VNL 421


>gi|308063903|gb|ADO05790.1| flagellar hook-associated protein FlgK [Helicobacter pylori Sat464]
          Length = 606

 Score =  122 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLIDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 105/341 (30%), Gaps = 8/341 (2%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606


>gi|146277702|ref|YP_001167861.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555943|gb|ABP70556.1| flagellar hook-associated protein FlgK [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 1365

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 114/329 (34%), Gaps = 22/329 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENVT 51
           ++ + A++   +     +    NI N + + YVRR+ +                S + V 
Sbjct: 2   SILDIARSGILSYRSALSVTAENIANVNTEGYVRREVVLAQVPGGQVSPTSAAGSGQGVR 61

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   R     +  + L    SA    + LQ+  A  E +        S    ++    ++
Sbjct: 62  VEDVRRAFDGLVAQRLRTADSAAASAQSLQTATAAVETLFLSGP--GSVPEALTGFFGAV 119

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              S N ++  L + ++   + +  +F T A  +Q +RAD         +     L +L 
Sbjct: 120 NRLSTNPNDGALRQLMLAAGDTLAGSFVTVASGLQGLRADVADLSAQAAAQATSQLRQLA 179

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  +   + S  +    LD+RD LL+ +S+ IGI+          V            
Sbjct: 180 ELNGRMVGSSGSAMNP--LLDERDRLLRDLSQTIGITASFDPIGRATVTLGS----TPGG 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P  +     ++         +       ++ Q   +  G ++ L     +V      +LD
Sbjct: 234 PLLLEGAVASTIGTAESGGLVLEVNRNGTTLQSRQITGGTLQGLASSLSAV-DNATAELD 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIA 320
            +AR + G  +       +     G  + 
Sbjct: 293 RLARQVAGEMNAIHAQGIDQTGAAGGDLF 321


>gi|187926948|ref|YP_001893293.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12J]
 gi|241665277|ref|YP_002983636.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D]
 gi|187728702|gb|ACD29866.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12J]
 gi|240867304|gb|ACS64964.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D]
          Length = 645

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 131/406 (32%), Gaps = 14/406 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N        A         NI NA+   Y R++ + T +           +   V 
Sbjct: 3   SSLLNIGATGLRVADINLQVTGNNIANANTPGYSRQEAVQTENIPLYAGVGYLGQGANVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          +    +A      L S  +           N+  +  ++   +  + 
Sbjct: 63  TVKRIYDQFLTAQVQNGQAATSAADQLNSLLSGLSKY--VSDSNSGLSSALTSFFNGADG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  ++ A  +   FN+ A ++  +    + +++ +IS++     ++  +
Sbjct: 121 LASNPSSTTARQVFLNGASGLQSRFNSIAGQLNALSGQVNTQVQTQISSVNGTAQQIAAL 180

Query: 174 NDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ND I    AS    A+D  DQRD L+Q +++ I  S +   +    +Y  +G  L +   
Sbjct: 181 NDQIAKAEASTGQPANDLRDQRDQLVQTLNQSIKASVVQTGDGQYNIYVGNGQALVQGNQ 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + Y  T  S         V+ +  S +  G +  L+  R + +   QN L  
Sbjct: 241 SYQLTAVPSEYDPTQLSVGYKSPAGTVTID-DSQLGGGALGGLMDFRRNTLIPAQNSLGR 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  +    + ++ +  ++    G  +                          +N     
Sbjct: 300 LAAAVSADVNTQNKLGMDANGNLGTDLFSVAGPSVAASSNNTGSATLTASITNANAGQGY 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
           D     +   + + +                 + +   ++G   + 
Sbjct: 360 DYQVKYQGGAYTISHYPDGSASQTVTSWPTIIDGVTLNLSGTMNSG 405



 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/442 (8%), Positives = 112/442 (25%), Gaps = 13/442 (2%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                 T     N+ V   ++  +      L A  S     +L   +++           
Sbjct: 214 KASVVQTGDGQYNIYVGNGQALVQGNQSYQLTAVPSEYDPTQLSVGYKS---PAGTVTID 270

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           ++                +   +++ LG+     + +V             +  D     
Sbjct: 271 DSQLGGGALGGLMDFRRNTLIPAQNSLGRLAAAVSADVNTQNKLGMDANGNLGTDLFSVA 330

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
              ++         T+         A+    +D+  +       IS     S      + 
Sbjct: 331 GPSVAASSNNTGSATL---TASITNANAGQGYDYQVKYQGGAYTISHYPDGSASQTVTSW 387

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
             +       L  T+    +F    +    +    +  D   V++     + +G      
Sbjct: 388 PTIIDGVTLNLSGTMNSGDSFLVRPTADAAATMQTLTTDYHDVAAATPVVLTQGSNNTGS 447

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
               S+          +   +  ++S        +           +    N      + 
Sbjct: 448 AAVSSLSVNSTYASSPLTSPISLTYSS-------AVGGSLSGFPSTVTVTANGTSTTYTG 500

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                 Q  +                 +   ++          ++     + +       
Sbjct: 501 GTAPYTQGATYVFNGVQMTLSGTPGNGDTFTISANTANSTDNGNASALASLRNATLLDGG 560

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             ++     + +  +    + +       + +    +    +  GVNL +E   L+K +Q
Sbjct: 561 TASIGTAWNSLVTQVGVQANTAGTNLTSQKALLASSTSQQQSVSGVNLDDEAMNLMKYQQ 620

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
           +Y  + K++   + +  +LL  
Sbjct: 621 AYQAAAKVMQTANSLFDSLLSI 642


>gi|322378745|ref|ZP_08053174.1| flagellar hook-associated protein FlgK [Helicobacter suis HS1]
 gi|321148775|gb|EFX43246.1| flagellar hook-associated protein FlgK [Helicobacter suis HS1]
          Length = 606

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 121/396 (30%), Gaps = 34/396 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            +L+  N +                NI NA++  Y R+  + T               V 
Sbjct: 3   GILSSLNTSYTGLQAHQVMVDVTGNNISNANDPFYSRQRVIATPQSTLMYTNRNMNMGVN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V + +  + +         +                      D         + +  ++ 
Sbjct: 63  VQSIQRVHDDFVFARYTRANQEHAFYSTQFDNLREVSSYF-PDMDEVGIHKDLEEYFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  +KN  E    + ++   + + QN + +   V  ++  A  E+   I  + R  SE+ 
Sbjct: 122 KDLAKNAKEPAQKQALVQKTKTLTQNIHDTRARVVALQKKASAELVSTIKEVNRLGSEIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSD 223
            +N  +K     K    A++  D+RD L  ++ E+IG S           N+  V    D
Sbjct: 182 NINRHLKEMEDPKMLKQANELRDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIKVADFDD 241

Query: 224 GTTLFETVPRDIN-------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           G  L      +I             +      +   F        N    + +GK+ AL+
Sbjct: 242 GYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEGKVGALM 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            I +          + ++ + LD  A+ LI S +     +        +   +G + L +
Sbjct: 302 GIYNDGSHGTTKGKLQVYVDTLDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEGDEALKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                   +  +           +    ++     N
Sbjct: 362 TNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMN 397



 Score = 99.7 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 128/435 (29%), Gaps = 10/435 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              +       K M D  +   ++ + + +  Q    LKE++       +  T+ ++ ++
Sbjct: 177 GSEIANINRHLKEMEDPKMLKQANEL-RDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIK 235

Query: 109 DSL--ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +   + Y  N++              VV+      R  Q      D ++      ++  
Sbjct: 236 VADFDDGYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEG 295

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--SEIIGISTIVRNNNDMVVYTSDG 224
                +          +K     ++D  D   + +  S     +    +N +  V   +G
Sbjct: 296 KVGALMGIYNDGSHGTTKGKLQVYVDTLDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEG 355

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
               +    +I     +     ++   I    + ++          +I A     +    
Sbjct: 356 DEALKDTNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMNDVIEQINANTDDNNDNNT 415

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                        +  +  K              +   IKD  + +   +          
Sbjct: 416 TNDFDDY-----FVAHYDNKTKQFTIQPKNASEGLFVSIKDHGSNITGALGLNPFFEGNN 470

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +                 +  + G  D+ N           F      +  +T+ EY 
Sbjct: 471 ARDIKINEAYRREPTTLRPWLAPIQGNFDVANMMQQLQYDKVDFYQNKFNDKPMTIEEYY 530

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +  +G +      + +     + V + + +      GV+  EE+  LIK +  Y  + K+
Sbjct: 531 QFVVGKIHTEAEHAKNTLDSKEAVLHVVKKEQEAISGVSSDEEMVNLIKFQSGYAANAKV 590

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+M++TLL   
Sbjct: 591 ITAIDRMIETLLGIK 605


>gi|297380296|gb|ADI35183.1| flagellar hook-associated protein FlgK [Helicobacter pylori v225d]
          Length = 606

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVSMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESKNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGESVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 126/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESKNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         ++N        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G ++             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GESVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVISAIDRMIDTLLGIKQ 606


>gi|260752892|ref|YP_003225785.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552255|gb|ACV75201.1| flagellar hook-associated protein FlgK [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/490 (14%), Positives = 152/490 (31%), Gaps = 47/490 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +  +     +   N  +    I  N+ NA    Y RRD                  +S  
Sbjct: 1   MSDILQIGASGVLNYGKAIDVIGENVSNASTTGYARRDVSLIEAPNGGSGILGLNQVSGN 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            VT  +            +   +S  G+   +  + +  E               ++   
Sbjct: 61  GVTTQSVTRAWDGFAATHVRNTASDAGEASAVSRWMSSAETALNSGDTGTD--SELTSFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            SL + + N +        I    +  +  + SA  ++ +      E +  +S +   L 
Sbjct: 119 TSLTTLASNPTNATQQAASISALNDSAKAISYSASNLKNVSDGIKDEADGSVSVINSDLK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  VN AI    +    A    DQRD LL  +S  IGI+  + +N  + +  S  +   
Sbjct: 179 TLAKVNAAIIRTPSGTDSAAGLADQRDQLLDDLSSKIGINADIASNGTVKITLSGTSNGQ 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             +      +   S+T + +S+     GV  + N  +                      +
Sbjct: 239 TLLSSTAAGQMAGSFTASMDSSGKLTIGVKDALNSNNNRDMSNSAG----------GSLS 288

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L  +A  +    S  +  A +       + + G                          
Sbjct: 289 GLVTVASTVADERSSLNSAASDFVTQVNTWNSQGTTPSGAAGG----------------- 331

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
               D  +++      +         I     S     + +  + +  +  +       +
Sbjct: 332 ----DLLTITDGDATTIATTTSDGSKIASANSSSPNGNLQNVSSALRGSNGIEANYATLV 387

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
               +  S +      ++ ++N  +++  +  GV+L  E + L++ +Q+YN S K++   
Sbjct: 388 SNNAQATSSAATNATNTKNLYNTAAKTRDSLSGVDLSTEAAQLLRYQQAYNASAKILQTA 447

Query: 469 DKMLQTLLEG 478
              +Q +LE 
Sbjct: 448 QTTMQAILEL 457


>gi|90579916|ref|ZP_01235724.1| flagellar hook-associated protein [Vibrio angustum S14]
 gi|90438801|gb|EAS63984.1| flagellar hook-associated protein [Vibrio angustum S14]
          Length = 778

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 132/408 (32%), Gaps = 20/408 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +     +    + +Q      NI N     Y R+      +               + 
Sbjct: 3   SDLMQLGISGLRTSQKQLDVTSHNISNVHTAGYSRQVVDQKAADAQWSGGNYYGSGAYID 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +          + L   ++ +    + Q    + +  ++    N    + ++   +S+ S
Sbjct: 63  SVNRAYDQFAARELTLSTTQLEASDVRQQHMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S + ++    +TV+++A +  ++FN+S   +  IR D ++++ + +  +     E+  +
Sbjct: 121 LSDHPNDLGSRQTVLEHANQAAKSFNSSHEMLTNIRRDVNEQLGVTLDRVNALGQEIAAI 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232
           N +++         HD LD++  L+ ++++   ++ +    +    V    G TL   V 
Sbjct: 181 NTSLQEM-PDGDQNHDLLDKQRGLINELAKYTKVTVLADKGSLADKVIIGSGDTLVSGVE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                       +  +   +                 G + A+L IRD V+    +++  
Sbjct: 240 SSQLKMVNGDPDLEDKQIALINGNQAKPIKSDDI--GGGLGAMLSIRDDVIDKSLDEMGR 297

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       ++      +     G  +   +    N         +            + 
Sbjct: 298 MAIGFSKQINDLQQSGTDLTGAIGSALFSDV----NSPTLVKERVLKPLGSQTDIDVKID 353

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           D  ++            G       +  + N+    D  A I++  TL
Sbjct: 354 DVNALKTGDYELTTEFDGTDYSFRLFDPAGNEMKKPDGSALISSTDTL 401



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/390 (9%), Positives = 92/390 (23%), Gaps = 5/390 (1%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              ++       L   +      L+ + +        +          R    I  +   
Sbjct: 389 PDGSALISSTDTLPVEVNVDGLTLTMNTVMGNPPATGQSETVIIQPMRRGAANISVEMSD 448

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
              L        +             T + + +        + +   +++          
Sbjct: 449 PRGLAGHRQTALIEANPNNAGTAALTTVTDNTSDAVAGNYQIDIINSADLTATDGTGNTG 508

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNS-----YTVTSESNPIFIDGVVVSSNQGSAVPK 269
                               ++              ++  N I   G  V+         
Sbjct: 509 AAQFDAIKGAAAEAAQGVYTLSLNATGDKISMVDAASNPINLIDATGTPVTELDYPLTTT 568

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G    ++    S V +                                 +       +  
Sbjct: 569 GNTLTMVASDGSQVSVATLGAGAAVGDSFTLNITTSDKLTVKNTQTNTLVDLDDGSGNPV 628

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                  T        +  +      + + +   N     G    +    +      I  
Sbjct: 629 QALAYPLTNANKEITFAGQATPTFSLTDNGQAGDNFTVSLGRSSAVGGNSNFLAMQQIQH 688

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                    ++++        +   +S++      +Q+ F+  SE  SN  GVNL EE +
Sbjct: 689 EKTMNEGKSSVIDLFEGLATDIGMMKSNADKTAEVNQLDFDAASERVSNLSGVNLDEEAA 748

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            L+  +QSY  S++++    +   TL+  V
Sbjct: 749 NLMNFQQSYMASSRIMSVAKETFDTLMRAV 778


>gi|322380594|ref|ZP_08054746.1| flagellar hook-associated protein FlgK [Helicobacter suis HS5]
 gi|321146916|gb|EFX41664.1| flagellar hook-associated protein FlgK [Helicobacter suis HS5]
          Length = 606

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 121/396 (30%), Gaps = 34/396 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            +L+  N +                NI NA++  Y R+  + T               V 
Sbjct: 3   GILSSLNTSYTGLQAHQVMVDVTGNNISNANDPFYSRQRVIATPQSTLMYTNRNMNMGVN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V + +  + +         +                      D         + +  ++ 
Sbjct: 63  VQSIQRVHDDFVFARYTRANQEHAFYSTQFDNLREVSSYF-PDMDEVGIHKDLEEYFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  +KN  E    + ++   + + QN + +   V  ++  A  E+   I  + R  SE+ 
Sbjct: 122 KDLAKNAKEPAQKQALVQKTKTLTQNIHDTRARVVVLQKKASAELVSTIKEVNRLGSEIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSD 223
            +N  +K     K    A++  D+RD L  ++ E+IG S           N+  V    D
Sbjct: 182 NINRHLKEMEDPKMLKQANELRDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIKVADFDD 241

Query: 224 GTTLFETVPRDIN-------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           G  L      +I             +      +   F        N    + +GK+ AL+
Sbjct: 242 GYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEGKVGALM 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            I +          + ++ + LD  A+ LI S +     +        +   +G + L +
Sbjct: 302 GIYNDGSHGTTKGKLQVYVDALDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEGDEALKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                   +  +           +    ++     N
Sbjct: 362 TNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMN 397



 Score = 99.7 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 128/435 (29%), Gaps = 10/435 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              +       K M D  +   ++ + + +  Q    LKE++       +  T+ ++ ++
Sbjct: 177 GSEIANINRHLKEMEDPKMLKQANEL-RDKRDQLEFQLKELIGGSVFKKHIQTNSMNDIK 235

Query: 109 DSL--ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +   + Y  N++              VV+      R  Q      D ++      ++  
Sbjct: 236 VADFDDGYVLNVANGFNIVDGAIFHPLVVEENKNENRLAQVYFRGDDFKVVNITDRIQEG 295

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--SEIIGISTIVRNNNDMVVYTSDG 224
                +          +K     ++D  D   + +  S     +    +N +  V   +G
Sbjct: 296 KVGALMGIYNDGSHGTTKGKLQVYVDALDTFAKGLIESTNAIYAQSAAHNIEGKVMDFEG 355

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
               +    +I     +     ++   I    + ++          +I A     +    
Sbjct: 356 DEALKDTNHNIKVGSFDLIAYNTDGQIIAKKTIQITPITTMNDVIEQINANTDDNNDNNT 415

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                        +  +  K              +   IKD  + +   +          
Sbjct: 416 TNDFDDY-----FVAHYDNKTKQFTIQPKNASEGLFVSIKDHGSNITGALGLNPFFEGNN 470

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +                 +  + G  D+ N           F      +  +T+ EY 
Sbjct: 471 ARDIKINEAYRREPTTLRPWLAPIQGNFDVANMMQQLQYDKVDFYQNKFNDKPMTIEEYY 530

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +  +G +      + +     + V + + +      GV+  EE+  LIK +  Y  + K+
Sbjct: 531 QFVVGKIHTEAEHAKNTLDSKEAVLHVVKKEQEAISGVSSDEEMVNLIKFQSGYAANAKV 590

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+M++TLL   
Sbjct: 591 ITAIDRMIETLLGIK 605


>gi|317178579|dbj|BAJ56367.1| flagellar hook-associated protein FlgK [Helicobacter pylori F30]
          Length = 606

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VTAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 DVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTVAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 125/401 (31%), Gaps = 9/401 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKI 201
             + ++   +D      I++         +++        + K    D++D  D   + +
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLDVYNDGSNGTLKGKLQDYIDLLDSFARGL 330

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            E          ++ +      G  +             N    + +      DG  ++ 
Sbjct: 331 IESTNAIYAQSASHHIE-----GEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIAR 385

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFI 319
              +  P   +  ++Q  ++     Q+    ++       SF+ +              +
Sbjct: 386 KTVAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGL 445

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              +KD        +           SN S  ++           +  + G  D+ N   
Sbjct: 446 FVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +  F         + + E+ +   G +  +   S  +    + +   I +   + 
Sbjct: 506 QLQYDSVDFYNDKFDVKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 566 SQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|317182372|dbj|BAJ60156.1| flagellar hook-associated protein FlgK [Helicobacter pylori F57]
          Length = 606

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/485 (12%), Positives = 133/485 (27%), Gaps = 45/485 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIV--------------RNNN 215
            +N  IK    +K    A++  D+RD L   + E++G +                   + 
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLIDKDSADFDE 241

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +    G  + +         K +             D   V +N    + +GK+ AL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKV-TNITDKLNQGKVGAL 300

Query: 276 LQIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           L + +          +  + + LD  A+ LI S +     + +          +  +   
Sbjct: 301 LDVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDEAFK 360

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +      + +  +   Y ++   +                +       +   D+  +N  
Sbjct: 361 DTNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDF 419

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVN 443
            D       N T     +          S    +          +         +   ++
Sbjct: 420 DDYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNIS 475

Query: 444 LQEEL 448
           L +E 
Sbjct: 476 LNKEY 480



 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T+ +     +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTNSLIDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++   +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTLKGKLQDYIDLLDSFAK 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|330875990|gb|EGH10139.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 686

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/417 (11%), Positives = 128/417 (30%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNGYLDAQLQTSTALSADAVAYSGQASKIDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  +    N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNEAVRQLNGLVGVKVVENYGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVITGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYANINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T     +          G  ++          AG  D  N       +      V 
Sbjct: 540 YTDNTTTPASKTAFEVQMTLSGSPLANDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     + +  +             S  V      +  +  GV+L EE + LI
Sbjct: 600 NGGVGTSLSGAYSDLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|315657526|ref|ZP_07910408.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491998|gb|EFU81607.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 688

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 91/327 (27%), Gaps = 34/327 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   R  +    D  L   +      +         E  S D+    S +  +  
Sbjct: 63  GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSEAWKGIES-SMDELGRMSVSDSMRT 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + N        + +  AE +V N  T    +  +  +  ++++  +++L   
Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +  +  +ND I+  T S  +A        D+RD L+  IS++ G +              
Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQ----------- 230

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK--IKALLQIRD 280
            G +++             +Y   +    +  + +V          +G   +  +     
Sbjct: 231 -GYSVYTKENAPHPSMIGQAYEDGTVEVMLGGNSLVGKDYVNHFEVEGARDMAGIDAAPR 289

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPI 307
                  + L            +    
Sbjct: 290 DKYKAAVDALKAKFPTNWNDTFDYHGQ 316



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
               Y +      +   +    +   + +     S+  +  +   + D H  ++      
Sbjct: 581 AAGQYVNGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 640

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +   +   V++ EE+  LI+ + +Y  + +++   + ML+ L+   +
Sbjct: 641 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 688


>gi|264676570|ref|YP_003276476.1| FlgE [Comamonas testosteroni CNB-2]
 gi|262207082|gb|ACY31180.1| FlgE [Comamonas testosteroni CNB-2]
          Length = 422

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/483 (9%), Positives = 113/483 (23%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            F +  +  N AS+    I  NI N++   +                      +   V  
Sbjct: 2   GFQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            S ++      + +  + +        F  +K+         +             E   
Sbjct: 62  ASVSQQFRQGSITSTGNNLDIAINGNGFFVVKQ------SDGSIAYTRAGNFGLDKEGNL 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           K +  D +   V+D +   +Q+  T              +   +++      +  T    
Sbjct: 116 KTVDNDNVMGYVVDPSTGKIQSGATPVPMSFPTGQPIPAKQTSKVNVELNLDARATAAAG 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                                +       I ++     +      T +   +F ++    
Sbjct: 176 DATATPPVAATPRATYGTSLNVYDTQGTAIPVNLYFEKD-----ATGNTWNVFNSLDATA 230

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                  +  + +   +  +     S                                  
Sbjct: 231 TPIGKAVFDASGKLTSVTPNAPTTGSGTT------------------------------- 259

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                L ++ G  + +      ++       Q+ +  +      
Sbjct: 260 -------------------LNLSVSGGTANPNGLQPFNVAFDFGGLTQFGTKFAVSSLKQ 300

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N+     ++  Y +   +      +A       L     N   W+  + 
Sbjct: 301 DGYTSGALTGINVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNK--WVATSD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  +         V+L  EL  ++  ++SY  + + I   D++  TL
Sbjct: 359 SGPALNGSAQTGTFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTL 418

Query: 476 LEG 478
           +  
Sbjct: 419 VNL 421


>gi|317180851|dbj|BAJ58637.1| flagellar hook-associated protein FlgK [Helicobacter pylori F32]
          Length = 606

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTANFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++   +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       +F+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTANFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVISTIDRMIDTLLGIKQ 606


>gi|289578425|ref|YP_003477052.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9]
 gi|289528138|gb|ADD02490.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9]
          Length = 413

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/478 (8%), Positives = 108/478 (22%), Gaps = 65/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + +            +S   +     S   +   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                     +         + +  +  D         + +   +   + +  A   +  
Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGKTVNTDTGNLVPISIKNWSSIAPAATTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +              ++    I+  +  N  +            T  R        S
Sbjct: 173 IGGN--------------LNASTEINGSISYNILVYDSQGGSHIATLTFTRTDASTWDWS 218

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            + +  +         ++      +                                   
Sbjct: 219 VSSSDPAISSVDGSGTLTFGADGKI----------------------------------- 243

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   +    G    +   +  N     +   +     + S         + ++   
Sbjct: 244 ------APNTTATGTLTFNMNTNETNATIGPVQLDLSQLTMFSSETDLRELSKNGNEAGS 297

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 298 LESINIDKYGVVSGIYSNGRKQIIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 355

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + K+I  +D+MLQ L+   +
Sbjct: 356 AAGTGTRGSINPGTLEMSNVDLANEFADMIVTQRGFQANAKIITASDEMLQDLVNMKR 413


>gi|319409169|emb|CBI82813.1| Flagellar hook protein FlgE [Bartonella schoenbuchensis R1]
          Length = 403

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/488 (9%), Positives = 124/488 (25%), Gaps = 93/488 (19%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQR 56
           MS+  +     +  N    + + +  N+ N +   Y R D   +     S +   V    
Sbjct: 1   MSIYGMMRTGVSGMNAQGTRLSGVAENVANVNTIGYKRTDVQFSNYVIPSGDYAYVPGGA 60

Query: 57  SEN---KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                          A             F  + +                       + 
Sbjct: 61  RSYVGHDISISGPARATGRMGDVMIDGNGFFRVAD------ENGIEYLTRAGSFSRDKDG 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y +NL+   L        +E  Q              +   +I+ +++            
Sbjct: 115 YVRNLAGYYL-------LDEDGQRVQIKGGPTDLFGPEVTTKIDFKVN------------ 155

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
                                       +E + +   +  N+          T +++  +
Sbjct: 156 ------------------------FDASAEALDVHGDIDPNDPESYNHKKSVTTYDSQGK 191

Query: 234 DINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            I  +     T  ++     ++ G  V +        G +K  +      +P    +   
Sbjct: 192 KIQVDFYMRKTDDNKWTVDAYVGGEKVGTTDLVFDKDGNLKDPVDDFTLTLPENDGEDGT 251

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
               +      KD +                                       N S   
Sbjct: 252 FEVAVNLGGVGKDSLVT----------------------------------QVGNLSAFE 277

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                 +   ++        ++   Y +   +   +  +  + +  +L   + +  G   
Sbjct: 278 LEADGMESGAFDGFTFGRNGEIEVRYTNHQMRVVGYVGMTTVTSPESLTVLSGSVFGT-- 335

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +R+    +      VF  +   Y     V + +EL+ +I+ +++Y  ++K+     +++
Sbjct: 336 NSRTGGQMMGRPGDGVFGLLFSGYLEDSNVEMSDELTDMIEAQRNYTANSKVFQTGSELM 395

Query: 473 QTLLEGVK 480
             ++   +
Sbjct: 396 DVIVNLKR 403


>gi|304390261|ref|ZP_07372215.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326743|gb|EFL93987.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 687

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 20/234 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   R  +    D  L   +      +         E    D+    S +  +  
Sbjct: 63  GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSEAWKGIESAM-DELGRMSVSDSMRT 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + N        + +  AE +V N  T    +  +  +  ++++  +++L   
Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNND 216
           +  +  +ND I+  T S  +A        D+RD L+  IS++ G +     +  
Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQGYSVY 235



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
               Y +      +   +    +   + +     S+  +  +   + D H  ++      
Sbjct: 580 AAGQYVNGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 639

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +   +   V++ EE+  LI+ + +Y  + +++   + ML+ L+   +
Sbjct: 640 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 687


>gi|292489133|ref|YP_003532020.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430]
 gi|292900252|ref|YP_003539621.1| flagellar hook protein [Erwinia amylovora ATCC 49946]
 gi|291200100|emb|CBJ47226.1| flagellar hook protein [Erwinia amylovora ATCC 49946]
 gi|291554567|emb|CBA22181.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430]
 gi|312173291|emb|CBX81546.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158]
          Length = 410

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 111/476 (23%), Gaps = 71/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--KNMF 63
            F++  +  N A+     +  NI N+    +                +  +     +N  
Sbjct: 2   SFSQGLSGLNAAASALDVVGNNIANSQTFGFKSGSIGFADIFAGAQGMGVQVAGSGQNFK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D  L      +        F  L +          +      +    +  Y  NL+  + 
Sbjct: 62  DGGLTGTGRNLDMGINGNGFFRLMD------EAGQAYYSRNGQFDTDVNGYITNLTNGLR 115

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                            +   +Q                                    +
Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQ---------------------------------IDKT 142

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                     +       S  +   T   + +     +S     F+++      +     
Sbjct: 143 GMPPVASTSGKLNGNLTASSEVITKTPFDHTDADTFNSSSQIEAFDSLGNRHTIDIYYVK 202

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T T E      D     ++                                         
Sbjct: 203 TATGEWKAYANDASAPVTSGTPPKS---------------------------EYTELAIT 235

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFL 362
            D     + +     +      L+      +   +    Q+ S+ S              
Sbjct: 236 FDENGKLTNDAASSILNVKSAGLNGATPLDLQLDLSGITQHESDASTFEPVKTDGHAAGN 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +    ++  +Y +   +      +A       L +   N   W+E  +S    + 
Sbjct: 296 YVNFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNN--TWVESPQSGGSIIG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L  E+  +I  +++Y  +++ I    +MLQTL+  
Sbjct: 354 TAGSGSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVNL 409


>gi|188576756|ref|YP_001913685.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576947|ref|YP_001913876.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521208|gb|ACD59153.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521399|gb|ACD59344.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 407

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/476 (7%), Positives = 106/476 (22%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  + A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     + +             +  ++           S +    +              
Sbjct: 122 LQVFAPNPSGNGFDV-----GRLSDLQLLTTDSPPKSTSTVNLAFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              +    ++     ++    +++ G  +++++           
Sbjct: 167 -------------------ATAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +       +    + +      AL    + ++                   
Sbjct: 208 KTANPNEWQVHNYVDGAAVGSPTTLQFSDTGALTAPANGIIA------------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          +   +  + QY    +             
Sbjct: 250 -----------------MTPFTPSTGAGVLSMQLNVSGSTQYGEQFALRDTRQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y +  +K      ++       L     N   W E   S +    
Sbjct: 293 LNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNV--WAESYTSGAARTS 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +      I      +  V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 APNTSDLGQIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINI 406


>gi|83814503|ref|YP_446705.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Salinibacter ruber DSM 13855]
 gi|294508641|ref|YP_003572700.1| flagellar hook protein FlgE [Salinibacter ruber M8]
 gi|83755897|gb|ABC44010.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Salinibacter ruber DSM 13855]
 gi|294344970|emb|CBH25748.1| Flagellar hook protein FlgE [Salinibacter ruber M8]
          Length = 432

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/480 (9%), Positives = 122/480 (25%), Gaps = 48/480 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  +   +   +   +  ++  NI N+    + R+    +       +   R+   
Sbjct: 1   MSLQS-LSIGVSGLRSHQTRLDTVSNNIANSSTTAFKRQRAAFSEELGQAILGVGRTAG- 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +    +     S  ++    S     +      ++   D     +   S 
Sbjct: 59  --------GSNINPSKVGRGVSVASIDRNFSQGSLNDTGIKTDLALNGDGFF-VASPKSG 109

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               +  +  A                                          N  +   
Sbjct: 110 AASDQRRLTRAGNFT-----------------------------------FNQNGELVTA 134

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                   +  +       ++  +                   G    +    D +    
Sbjct: 135 NGLNVQGWEVGEDGTANTGELKNVQFDPNAQSAAKATTEAQVGGNLSADAEAGDTSEISS 194

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
             Y    +++ + I+    S +  +   +     L              +       + S
Sbjct: 195 VVYDEQGKAHNVVINFENTSEDTWTFSVEDPDGVLQDANGGGPGDANGTITFKDDGSVDS 254

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            S          N     ++    +   +  + +  ++    Q+  + +    G + +  
Sbjct: 255 ISGMTNAYDPDGNGTNDGVSLDWTNDAVQGGKSLGISLRDITQFSGSTTSKFQGQNGNSS 314

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +         L  +Y +   +      +  +N    L +   N         S    
Sbjct: 315 GELSGVQFTPEGKLQLNYTNGVQEEEYQLAIGDVNNPNGLEQQGENFFTTTG--ASGDLQ 372

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L    + +   +      +  V+L +E S LIK ++SY  S+++I   D++L   ++  +
Sbjct: 373 LGRAGRDLQTSVVSGALESSNVDLAKEFSDLIKAQRSYQASSQIITTADEVLNQTVQLKR 432


>gi|289651639|ref|ZP_06482982.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 686

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVIGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/386 (9%), Positives = 94/386 (24%), Gaps = 6/386 (1%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               ++           N    +       +A        T+             +    
Sbjct: 301 LADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGDTSKL 360

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++               +             D         S  +  + +   +   V 
Sbjct: 361 TADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDVFKVT 420

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T +G +    V  D       +    +  +     G        +            +R
Sbjct: 421 PTRNGASGISVVLTDPKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSVQTSDLR 480

Query: 280 DSVVPIFQNQLD--EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +++      +L    ++   + S++  +       +  G  ++  I    +   +     
Sbjct: 481 NAIKDSAPMKLVMGAVSSTGVQSYTLINASGAPVLDQNGSAVSGTIIQGQSNAVKLSIGY 540

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAG 393
                      +F           + +  ++       +   ++     +       V  
Sbjct: 541 TDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVTN 600

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                +L     + +  +             S  V      +  +  GV+L EE + LIK
Sbjct: 601 GGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIK 660

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q Y  S+++I     +  TL+  +
Sbjct: 661 YQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|298345981|ref|YP_003718668.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC
           43063]
 gi|298236042|gb|ADI67174.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC
           43063]
          Length = 687

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 20/234 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   R  +    D  L   +      +         E    D+    S +  +  
Sbjct: 63  GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSEAWKGIESAM-DELGRMSVSDSMRT 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + N        + +  AE +V N  T    +  +  +  ++++  +++L   
Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVRNNND 216
           +  +  +ND I+  T S  +A        D+RD L+  IS++ G +     +  
Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQGYSVY 235



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
               Y +      +   +    +   + +     S+  +  +   + D H  ++      
Sbjct: 580 AAGQYVNGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 639

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +   +   V++ EE+  LI+ + +Y  + +++   + ML+ L+   +
Sbjct: 640 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 687


>gi|260574380|ref|ZP_05842384.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp.
           SW2]
 gi|259023276|gb|EEW26568.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp.
           SW2]
          Length = 435

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/491 (10%), Positives = 119/491 (24%), Gaps = 67/491 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53
           M++ +  +      N  + + ASI  NI N+    Y R  T                +  
Sbjct: 1   MTISSALSAGVAGLNANATRLASISDNIANSGTYGYKRASTDFESMVITQAAGAGTYSAG 60

Query: 54  TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRD 109
             R+    + D+   L + S+A+      +    +     +  D    N         R 
Sbjct: 61  GVRASTTRLIDERGALVSTSNALDLAVSGRGMLPVSATAGLGTDLAGTNLMMTTTGSFRP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                 +  S  +L     +    +      +   +  +  +++++     + ++  ++ 
Sbjct: 121 DANGVLRTQSGLVLLGWPANADGTIPVLPRDTIAGLTPVVINSNQQAGDPTTEMKLGVNL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                 A    T        F +        ++    +     +N   +           
Sbjct: 181 PATQTTAGAAGTTLPLSIEYFGNLGTSETLDVTFTPTVPATGSSNEWKMEIRDSAQGGAL 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                I F+        S  N   I  V   S        G +   +      +      
Sbjct: 241 VGEYTIVFD-------DSRGNGGTIASVTTVSGGAYNAADGTLALTVAGGPLTM------ 287

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                          DP      +      +             +            +  
Sbjct: 288 ---------TIGKVGDPNGLTQLSDSFAPTSITKNGSPVGNLMEVEVDENGYLTASYDTG 338

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
           F R    +      N+  L    +       +    F++D                    
Sbjct: 339 FTRRLYQIPLVDTPNLNGLIALNNQTYQISPNSGSFFLWD-------------------- 378

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                                 +          ++  EL+ LI+ +++Y+ + K+I   D
Sbjct: 379 --------------AGDGPTGAVVGYSREGSTTDVAAELTNLIQTQRAYSSNAKVIQTVD 424

Query: 470 KMLQTLLEGVK 480
           +MLQ      +
Sbjct: 425 EMLQETTNIKR 435


>gi|329849962|ref|ZP_08264808.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19]
 gi|328841873|gb|EGF91443.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19]
          Length = 474

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/489 (12%), Positives = 144/489 (29%), Gaps = 24/489 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           M++              +   ++I  NI NA+   Y R  T  T      +     + N 
Sbjct: 1   MTINRAMQSGVTALAANASALSTISNNIANANTTGYKRVTTNFTNLVSGTSGTATYASNG 60

Query: 60  -------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                         L+A SS        Q F    +   A +  +               
Sbjct: 61  VTAAVQQNMTARGELNAASSGYSLGIDGQGFFVTSDTSDAINQGSTMLFTRDGSFNTDTS 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y +N +   L                 S+  V     D  +   + ++N+       T 
Sbjct: 121 GYLRNAAGLYLQGW-----------QADSSGTVNPSSTDITRLGPINVANIANRAESTTR 169

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEII-GISTIVRNNNDMVVYTSDGTTLFETV 231
           V+      +++           D      +  +   +  +    D  V  +   +L +  
Sbjct: 170 VSFDANLDSSTDISDAAANGTYDATSATAAMSVYDAAAGIGTKPDSTVSMTVSDSLGQQH 229

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
              ++  K  +    +      +    V+    + + +     L    D  + +  +  +
Sbjct: 230 TVTMSLLKRGTDAANNTLWDYEVWSPDVT--DTAGLAQLATGTLAFNPDGTLDLAASTTN 287

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           +         S+    A NS   P    + G       +    +           + +  
Sbjct: 288 DATGAPGAFTSDYTIGASNSTAAPRWNNSFGAAGQSLSMGLSGASPTSEITHLAGDSTTT 347

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           R   + ++  L     +     +   Y +   +      +A       L   + N   + 
Sbjct: 348 RLTANGTEFGLLTKVEIDKDGIVTAIYNNGNTRTLAQVALATFINANGLTPISGN--AFT 405

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             ++S    L    +    +++ +      V+L +E + LI  +++Y+ ++K+I  +D+M
Sbjct: 406 VSSQSGGFTLREPGEGGAGNLAPAALEASTVDLAQEFTGLITTQRAYSAASKIITTSDEM 465

Query: 472 LQTLLEGVK 480
           LQ LL   +
Sbjct: 466 LQELLALKR 474


>gi|237755390|ref|ZP_04584017.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692431|gb|EEP61412.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 413

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 109/478 (22%), Gaps = 65/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L  F  A    N   Q    I  NI N +   +                          
Sbjct: 1   MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDL--------IAHSLTTF 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +          G    L +     +  S     N +    ++   +       N     
Sbjct: 53  ANNTPKNTEIGGGSFIALTT-----KDFSQGSFMNTNSPTDLALDGEGFFMVKDNQGTVY 107

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +             N    ++Q    D    I   +  +    +    +   I     
Sbjct: 108 YTRAGQFRLNADGDLVNVDGMKLQGWTLDDKGNIIGALDKINVPYAINPTITTKISLVEP 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  D               S    IS      +       +  T+++++           
Sbjct: 168 TNLD---------------SRSNVISATFDPTDSTTFNYVNSMTVYDSLGNPHTLSFYFQ 212

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  S +   +   V + ++  + V    +                              
Sbjct: 213 KTNESSTGSTWKVYVYMDNDLTTQVGSSTL------------------------------ 242

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     +   P       +   +               +  ++            K  
Sbjct: 243 NFDTNGNLTSGSP---FTLSLTLTNGATSPQSITVDVSKIKQVASDFIFYANQDGFAKGD 299

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +A    +   Y +   KN     VA       L+    N         + +    
Sbjct: 300 LIGVAVAEDGIIKGMYSNGNVKNIARLAVATFKDKEMLVRKGNNLY----LPNTQTFTPI 355

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    + + +   +     V++  E   LI  +++Y  + ++I   D++LQ  +   +
Sbjct: 356 ITPGGILSKVRSGFLELSNVDISREFINLITAQRAYQANARVITTDDQILQEAMNIKR 413


>gi|146335607|gb|ABQ23406.1| FlgK [Pseudomonas syringae pv. averrhoi]
          Length = 686

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/386 (9%), Positives = 94/386 (24%), Gaps = 6/386 (1%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               ++           N    +       +A        T+             +    
Sbjct: 301 LADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGDTSKL 360

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++               +             D         S  +  + +   +   V 
Sbjct: 361 TADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDVFKVT 420

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T +G +    V  D       +    +  +     G        +            +R
Sbjct: 421 PTRNGASGISVVLTDPKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSVQTSDLR 480

Query: 280 DSVVPIFQNQLD--EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +++      +L    ++   + S++  +       +  G  ++  I    +   +     
Sbjct: 481 NAIKDSAPMKLVMGAVSSTGVQSYTLINASGAPVLDQNGSAVSGTIIQGQSNAIKLSIGY 540

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAG 393
                      +F           + +  ++       +   ++     +       V  
Sbjct: 541 TDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQMAKTVGVTN 600

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                +L     + +  +             S  V      +  +  GV+L EE + LIK
Sbjct: 601 GGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIK 660

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q Y  S+++I     +  TL+  +
Sbjct: 661 YQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|126462484|ref|YP_001043598.1| flagellar basal body FlaE domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104148|gb|ABN76826.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 423

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 106/483 (21%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
             N A +  + A    A+   NI N     +            +      R         
Sbjct: 2   SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      + A  + +      Q F A +  +  +                + E  +
Sbjct: 62  LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L    +    + +     SA  +              ++      ++  ++  
Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDNAMLGT 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A+  D  D                   T       + ++ + G  +        
Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                     T  +  + + G                          +   Q  L     
Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                         ++                +     +  T           + +   G
Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDG 302

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        + +G   +   Y            +        L +   +  G+     
Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  I         V+L EEL  LI  +++Y  S K +  ++ ++QT+
Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418

Query: 476 LEG 478
           +  
Sbjct: 419 MNI 421


>gi|259907634|ref|YP_002647990.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96]
 gi|224963256|emb|CAX54740.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96]
 gi|283477476|emb|CAY73392.1| flgE [Erwinia pyrifoliae DSM 12163]
          Length = 410

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 113/476 (23%), Gaps = 71/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE--NKNMF 63
            F++  +  N A+     +  NI N+    +                +  +    ++N  
Sbjct: 2   SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFAGAQGMGVQVAGSSQNFK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D  L      +        F  L +          +      +    +  Y  NL+  + 
Sbjct: 62  DGGLTGTGRNMDMGINGNGFFRLMD------EAGQAYYSRNGQFDTDVNGYITNLTNGLR 115

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                            +   +Q                                    +
Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQ---------------------------------IDKT 142

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                     +       S  +   T   + +     +S     F+++      +     
Sbjct: 143 GMPPVASTSGKLNGNLTASAEVVTKTPFDHTDGETFNSSSQIEAFDSLGNRHTIDIYYVK 202

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T T E      D     ++                                        +
Sbjct: 203 TATGEWKAYANDASAPVTSGTPPKS---------------------------EYTELDIK 235

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFL 362
            D     + +     +      L+      +   +    Q+ S+ S              
Sbjct: 236 FDENGKLTNDAASSILNVKSAGLNGATPLDLQLDLSGITQHESDASTFEPVKTDGHAAGN 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +    ++  +Y +   +      +A       L +   N   W+E  +S    + 
Sbjct: 296 YVNFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNN--TWVESPQSGGSIIG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L  E+  +I  +++Y  +++ I    +MLQTL+  
Sbjct: 354 TAGTGSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVNL 409


>gi|167770210|ref|ZP_02442263.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM
           17241]
 gi|167667532|gb|EDS11662.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM
           17241]
          Length = 556

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/558 (8%), Positives = 114/558 (20%), Gaps = 86/558 (15%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------------P 47
                    +  Q+   I  NI N +   +                             P
Sbjct: 1   MYSGVAGMKSHQQRMDVIGNNIANVNTYGFKSSRVTFRDMFYQNIRNASAGTSTRGGVSP 60

Query: 48  ENVTVVTQRSENKNMFDKV-LHAHSSAIGQQRLLQSFEALKE----------MMSADDHY 96
             V   +Q +    +  +  + +    +        F  +++           M   D  
Sbjct: 61  SGVGYGSQIASIDKLMTQSSMTSTGQPLDCAITGDGFFQVQDSDGNKFYTRAGMLDIDQA 120

Query: 97  NNSPTHYISKLRDSLESYSK-----------------NLSEDILGKTVIDNAEEVVQNFN 139
                          +                       +     +T+ +    +     
Sbjct: 121 TGYLVDLNGYFVLGTQGPDVIGKAPGNSKIKVELDPLEPAAGSKVQTIQNVEYTLSATNY 180

Query: 140 TSAREVQKIRADADKEIELE-----------------ISNLRRFLSELTVVNDAIKFKTA 182
           T+A  V    +  ++    +                  +      + +  VN AI     
Sbjct: 181 TTAGNVNFNFSLDNEMPTGQNIRVVVDGNSIAVKVNPTAQFASLSAFMDEVNKAITDARG 240

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                                                   DG        +        S
Sbjct: 241 GVEHPAGLFTITADPEPAGPLTGEQIVNSDRGPTGGKIVFDGALKTGYAVKSYGSAFSAS 300

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +T E           + +   +     +        +V     +          G   
Sbjct: 301 GNLTFEIQRTAPANNTTAPDSADSRYTVTVTGTNAAGQAVTYTMADLTYAQLTNSAGVHL 360

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +    +  +   L I     + ++                           + S    
Sbjct: 361 VNNAAGADPNDSFDLRIPSSFYEKNDNGTPDNPADDTYTFPAAGTALGTATPQTPSGNIG 420

Query: 363 WNVKN--------------------LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              K+                      G   +I       +       +A  +    L +
Sbjct: 421 LGSKDFLLEGGTEGGPQSLMNLTGIAIGADGIIRAQNAGKDIIVGRIDLANFDNPQGLDQ 480

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              +       + S      +  +     +  S      V+L +E S +I  ++ +  ++
Sbjct: 481 AGNSYFT--ATDNSGKAKYAVPGEDGTGALKNSALEMSNVDLSQEFSDMIVTQRGFQANS 538

Query: 463 KLIMFTDKMLQTLLEGVK 480
           +LI  +D ML+ L+   +
Sbjct: 539 RLITVSDTMLEELINLKR 556


>gi|229524192|ref|ZP_04413597.1| flagellar hook protein FlgE [Vibrio cholerae bv. albensis VL426]
 gi|229337773|gb|EEO02790.1| flagellar hook protein FlgE [Vibrio cholerae bv. albensis VL426]
          Length = 434

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 113/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        S+
Sbjct: 63  VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D    +  E   +           
Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A     A+     D  D     +         ++    ++    Y      L +    +
Sbjct: 157 TANIDLGANLPANGDLKDPTLFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T E     + G   S              +    D  +    N    + 
Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDAASPTGHVGHT------MRFNNDGTLASLNNGQPIVT 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  +  D    +                     Q +S  +    Q+ +     +  
Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFKLDTATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +      ++  F  IS        +++ +EL  LI  ++++  +++ +   + + Q 
Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|12620925|gb|AAG61142.1| flagellar hook-associated protein 1 [Helicobacter pylori]
          Length = 606

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++   +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  DL N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDLANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|77463652|ref|YP_353156.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1]
 gi|77388070|gb|ABA79255.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1]
          Length = 423

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 107/483 (22%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
             N A +  + A    A+   NI N     +            +           + V  
Sbjct: 2   SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      + A  + +      Q F A +  +  +                + E  +
Sbjct: 62  LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L    +    + +     SA  +              ++      ++  ++  
Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTIPLTMGSPVGTSTVALSVDLPTDNAMLGT 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A+  D  D                   T       + ++ + G  +        
Sbjct: 182 QAAVPPAAAFDPAD------------------PTTYAAVTAVPIFDAKGNAVEAAAYFIK 223

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                     T  +  + + G                          +   Q  L     
Sbjct: 224 TANPTAGNPQTDWAVRLVVAGEP------------------------LTPAQGDL----- 254

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                         ++                +     +  T           + +   G
Sbjct: 255 ------------TFDATGALSGGTGALSFTAASGSSYTLDLTETQLADRSFEVNTVSQDG 302

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        + +G   +   Y            +        L +   +  G+     
Sbjct: 303 KSASALTSLEVDASG--TVWAAYGAGSPVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  I         V+L EEL  LI  +++Y  S K +  ++ ++QT+
Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418

Query: 476 LEG 478
           +  
Sbjct: 419 MNI 421


>gi|325111107|ref|YP_004272175.1| flagellar hook-associated protein FlgK [Planctomyces brasiliensis
           DSM 5305]
 gi|324971375|gb|ADY62153.1| flagellar hook-associated protein FlgK [Planctomyces brasiliensis
           DSM 5305]
          Length = 565

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/414 (12%), Positives = 133/414 (32%), Gaps = 20/414 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M L A    A       S       +N+ NA++ NYVR   + + +              
Sbjct: 1   MGLTASLYTAGQSLELFSAGIQVAGQNVANANSPNYVRERLLVSTASPYQSGGLLFGTGA 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                R +     +  +H  ++ +       +  A  +++   +   N  +  +++   +
Sbjct: 61  QADGIRQQIDKNLESQIHLANADVASANARVNGYAQLQLIVG-ELGENDLSTRLNEFLGA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           +             + V+   E +     +   ++ + R   +  +   +      + ++
Sbjct: 120 MNDVVNQPELPANRQLVVQEGELLANTIQSMRAQIDRARTSINSSLNELVVEANELIQQI 179

Query: 171 TVVNDAIKFKTASK---HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N  I    ++     DA     +R   L +++EII I T+ + N  + V++ +   +
Sbjct: 180 ADLNPQIVRMESAGLLNSDAGGLRTERLTALNRLAEIIPIRTVEQENGIVDVFSGNDYLV 239

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +     +   +     V  +            +    +V  G++   ++ RD+++  F 
Sbjct: 240 IQGSTNTLELTREEDRGVAVDQVRF------AKTQHSMSVESGELMGAIEARDNILGGFV 293

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +QLD+ +R L+   ++       +           I D    L Q        +  +   
Sbjct: 294 DQLDQYSRALVFDMNKIHSSGEGTVGYESTTSLYEINDTAAALNQAGLTYTPQHGSFDVK 353

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                     +     ++  L G    ++    S +     +        +T+ 
Sbjct: 354 VYDKTTDTFKTTTIDIDLDGLGGNDTSLDDLQASLDAIGNLNASIDTTGRLTIT 407



 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/429 (9%), Positives = 106/429 (24%), Gaps = 15/429 (3%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             +   R+   +  ++++   +  I Q   L       E     +              +
Sbjct: 152 AQIDRARTSINSSLNELVVEANELIQQIADLNPQIVRMESAGLLNSDAGGLRTERLTALN 211

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L       + +     V   +         S   ++  R +       ++   +   S 
Sbjct: 212 RLAEIIPIRTVEQENGIVDVFSGNDYLVIQGSTNTLELTREEDRGVAVDQVRFAKTQHSM 271

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                + +    A  +    F+DQ D   + +   +               T+    + +
Sbjct: 272 SVESGELMGAIEARDNILGGFVDQLDQYSRALVFDMNKIHSSGEGTVGYESTTSLYEIND 331

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           T           +    S    ++             +    +       D+ +   Q  
Sbjct: 332 TAAALNQAGLTYTPQHGSFDVKVYDKTTDTFKTTTIDIDLDGLGG----NDTSLDDLQAS 387

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +  +     +               F  D    L                    + +
Sbjct: 388 LDAIGNLNASIDTTGRLTITADTGYDVRFSNDTSNTLAALGINTFFN--------GKDAN 439

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +    ++           AG         ++       +         +L E+    + 
Sbjct: 440 EISVNSALVDNPNL---LAAGAGGGPGDNSNAIRLANFMEQPLDSLGGFSLDEFYERVVT 496

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            + +  S    +          +        GV+L EE   +++++  Y  S ++I   +
Sbjct: 497 QVAEGASAESAIASGFTSFQASLLGQRQQISGVSLDEEAIRILEMQHGYTASARIISTLE 556

Query: 470 KMLQTLLEG 478
           ++  TL+  
Sbjct: 557 ELFNTLVNL 565


>gi|152990394|ref|YP_001356116.1| flagellar hook-associated protein 1 FliK [Nitratiruptor sp.
           SB155-2]
 gi|151422255|dbj|BAF69759.1| flagellar hook-associated protein 1 FliK [Nitratiruptor sp.
           SB155-2]
          Length = 596

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/444 (14%), Positives = 143/444 (32%), Gaps = 6/444 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV-VTQRSENKN 61
           +    N          +    +  NI N + + Y R +   +  P   T+    +     
Sbjct: 11  MANALNNISQTLLQNQKAIDIVNNNIANLNTEGYSRVEAGFSSLPTGGTLLSEAKRVFDK 70

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
            +   +   +        L S     E +  D       +  I +  +SL     +  + 
Sbjct: 71  NYFVRMINTNQEKSYYENLNSTLNQLESLFKDSL-GGGFSKQIDEFYNSLNDVISSPDDL 129

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +  K+ +  A+ +V    + +  +  +           +  +      +T +N  IK+  
Sbjct: 130 VARKSFLTTAKMLVGRVRSVSEGMNDLGGLVKNSFRETVMQINNLARRITDLNKNIKYFA 189

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
             +   + +LDQRD  ++K+S +I I  +   NN + + T+ G  L           + N
Sbjct: 190 NDQTKLNSYLDQRDQAIKKLSSLIDIKVLYHQNNTVDISTAKGHMLVLQDKATPIQTRTN 249

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV-PIFQNQLDEMARVLIGS 300
             T+ +       + +    +  +      I   L  +D      +QN+        I S
Sbjct: 250 KITMVNSYAVAPANTLSSPKDVITDPGTLTINYKLDGKDKSFSVDYQNRSLLDIAAEINS 309

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            S+       +                 +  Q    +I  +    +    + +   + K+
Sbjct: 310 QSDDLKANVVNVGDQTNPDYRLTISTTMQNVQNEIVSIEDSDANDTTGFDINNSNEIYKQ 369

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-EKNRSDSH 419
               ++ L+G  DL N +      + I            +  + ++    +   +R+  +
Sbjct: 370 NYATLRVLSGSVDLTNLFQYGKIASLIKSQSLINQALYNVNRFTQDFAYQINSVHRNGYN 429

Query: 420 DLHMKSQVVFNHISESYSNTVGVN 443
             +     +F  ISE   N +GV+
Sbjct: 430 LDNETGLDLF--ISEQSGNGLGVD 451



 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/444 (12%), Positives = 144/444 (32%), Gaps = 14/444 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYN 97
           R+T+  I+     +       K   +     +S    + + ++   +L ++ +    +  
Sbjct: 165 RETVMQINNLARRITDLNKNIKYFANDQTKLNSYLDQRDQAIKKLSSLIDIKVLYHQNNT 224

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
              +     +    +  +   +       V   A       ++    +            
Sbjct: 225 VDISTAKGHMLVLQDKATPIQTRTNKITMVNSYAVAPANTLSSPKDVITDPGTLTINYKL 284

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                      +   + D      +   D    +             + IST ++N  + 
Sbjct: 285 DGKDKSFSVDYQNRSLLDIAAEINSQSDDLKANVVNVGD-QTNPDYRLTISTTMQNVQNE 343

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
           +V   D          D     +N+     + N   +  +  S +  +    GKI +L++
Sbjct: 344 IVSIEDS------DANDTTGFDINNSNEIYKQNYATLRVLSGSVDLTNLFQYGKIASLIK 397

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
            +  ++      ++   +      +       N +N  GL +    +  +       +  
Sbjct: 398 SQS-LINQALYNVNRFTQDFAYQINSVHRNGYNLDNETGLDLFISEQSGNGLGVDATNIR 456

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +      +      ++  + +       K   G     +   +S  +    D + G+   
Sbjct: 457 LNFEDPEKLAAGTKQNMPADNTLAKAIEKTKDGTISYFDSATNSLQEYEQPDFLDGL--- 513

Query: 398 VTLLEYARN-SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
            T  ++  +  +  +      + D    + ++FN ++E   +  GVNL EEL  L ++++
Sbjct: 514 -TYNDFYNSKIVSDIAFEAEYTKDRLDDTTLLFNTLNEKIEDISGVNLDEELVKLTQLQR 572

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           SY  + +++M TD++ +TL+E  +
Sbjct: 573 SYQATARVMMVTDELFKTLIEMTR 596


>gi|222824502|ref|YP_002576076.1| flagellar hook protein FlgE [Campylobacter lari RM2100]
 gi|222539723|gb|ACM64824.1| flagellar hook protein FlgE [Campylobacter lari RM2100]
          Length = 541

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/548 (10%), Positives = 117/548 (21%), Gaps = 77/548 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENV 50
           +   F    N   + S    +   NI N +   +   D                   +  
Sbjct: 1   MFTAFYNGVNGVKSQSYGIDNTAHNISNVNTVGFKYSDVAFKDVFYSTVTTQSYNKGQTG 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                 + N       L A           + F           + N          R  
Sbjct: 61  YGSVAGATNDVFEQGPLVATDHEFDVAIAGKGF-------FGVSNGNGIYYTRNGAFRPD 113

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI------ELEISNLR 164
                 + + + +  T+  + +E+  +   S    Q++       I        +I  + 
Sbjct: 114 ANGNLVDANGNYVLGTMNPSLQEIQLSDRVSNIFGQQLGQKVTTAITGKPNENFQIGGVN 173

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL----QKISEIIGISTIVRNNNDMVVY 220
                    N  +  +          LD             +     +       ++   
Sbjct: 174 TQGPISVPKNLYLPPQPTQNITWSGNLDTSTKTEAVKVDVDASKFNFTKNEDGTVNISGS 233

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-------------- 266
             D           I F   +    +        + +  +                    
Sbjct: 234 VKDEQVFGLKPGDTIYFTIKDEKGASETLQATLDENLAFNIENKKIDKIDLENAKLESSH 293

Query: 267 ------------------VPKGKIKALLQIRDSVVPIFQNQLDE---------------- 292
                              P G    +    D V+P     L+                 
Sbjct: 294 LSVEKEVADSSELSAKLINPDGSTSWVKVKLDRVLPQNGTNLEYKAVAQVYDNDGNKIGG 353

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
               LI        I     +V        I           +          +    + 
Sbjct: 354 TTEGLITFNESGALIGNTLTSVDNNGTKVNINLGSFYDPNKPNSGYDGLHALPNKKPSVH 413

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   N   +     +I  + +          +        L +   N  G   
Sbjct: 414 TQTDGKGEGFLNNYAINTDGTIIATFTNGEQIPMAKLALFNFTNEQGLEKLGENLYGQTG 473

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + + +  L             SY     V+L    + LI ++++Y+ S+K I   D+M+
Sbjct: 474 NSGNPTFLLDANGNFSTATFKGSYLEQSNVDLSVAFTNLITLQKAYDSSSKSITTADQMI 533

Query: 473 QTLLEGVK 480
           Q  +   +
Sbjct: 534 QKAINMKR 541


>gi|261838448|gb|ACX98214.1| flagellar hook-associated protein 1 [Helicobacter pylori 51]
          Length = 606

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASFFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPMEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIVQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++   +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPMEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIVQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDVKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|289627770|ref|ZP_06460724.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866430|gb|EGH01139.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 686

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/386 (9%), Positives = 94/386 (24%), Gaps = 6/386 (1%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               ++           N    +       +A        T+             +    
Sbjct: 301 LADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGDTSKL 360

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++               +             D         S  +  + +   +   V 
Sbjct: 361 TADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDVFKVT 420

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T +G +    V  D       +    +  +     G        +            +R
Sbjct: 421 PTRNGASGISVVLTDPKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSVQTSDLR 480

Query: 280 DSVVPIFQNQLD--EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +++      +L    ++   + S++  +       +  G  ++  I    +   +     
Sbjct: 481 NAIKDSAPMKLVMGAVSSTGVQSYTLINASGAPVLDQNGSAVSGTIIQGQSNAVKLSIGY 540

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAG 393
                      +F           + +  ++       +   ++     +       V  
Sbjct: 541 TDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVTN 600

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                +L     + +  +             S  V      +  +  GV+L EE + LIK
Sbjct: 601 GGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIK 660

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q Y  S+++I     +  TL+  +
Sbjct: 661 YQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|28869148|ref|NP_791767.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967575|ref|ZP_03395723.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato T1]
 gi|301385720|ref|ZP_07234138.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060067|ref|ZP_07251608.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato K40]
 gi|302134826|ref|ZP_07260816.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852388|gb|AAO55462.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927876|gb|EEB61423.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tomato T1]
 gi|331017018|gb|EGH97074.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 686

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNGYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++     + +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSSFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNEAVRQLNGLVGVKVVENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVITGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYANINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFNDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLKGNALAA 413



 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T     +          G  ++          AG  D  N       +      V 
Sbjct: 540 YTDNTTTPASKTAFEVQMTLSGSPLANDTFSIGLTGAGSSDNRNALAIVGLQTAKTVGVT 599

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     + +  +             S  V      +  +  GV+L EE + LI
Sbjct: 600 NGGVGTSLSGAYSDLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|302134834|ref|ZP_07260824.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB
           1108]
          Length = 441

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/479 (10%), Positives = 106/479 (22%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +         +
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E +  N  
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  +                ++NL    +  T+       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATSAITNVANLNSTTALPTL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +      +  
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTAADKNDLTFDSSGNLVVAAPGTVPSDSANIKFNTDGIFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +       +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGVPESGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|257484939|ref|ZP_05638980.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|49205098|dbj|BAC75962.2| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tabaci]
 gi|330986475|gb|EGH84578.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011049|gb|EGH91105.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 686

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 42/147 (28%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T     +          G  +           AG  D  N       +      V 
Sbjct: 540 YTDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     + +  +             S  V      +  +  GV+L EE + LI
Sbjct: 600 NGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|297580843|ref|ZP_06942768.1| flagellar hook protein FlgE [Vibrio cholerae RC385]
 gi|297534669|gb|EFH73505.1| flagellar hook protein FlgE [Vibrio cholerae RC385]
          Length = 434

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 113/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        S+
Sbjct: 63  VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D    +  E   +           
Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A     A+     D  D     +         ++    ++    Y      L +    +
Sbjct: 157 TANIDLGANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T E     + G   S              +    D  +    N    + 
Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDAASPTGHVGHT------MRFNNDGTLASLNNGQPIVT 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  +  D    +                     Q +S  +    Q+ +     +  
Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFKLDTATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +      ++  F  IS        +++ +EL  LI  ++++  +++ +   + + Q 
Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|315587007|gb|ADU41388.1| flagellar hook-associated protein FlgK [Helicobacter pylori 35A]
          Length = 606

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++   +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTAIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|71733906|ref|YP_275555.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487849|ref|ZP_07005889.1| Flagellar hook-associated protein flgK [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554459|gb|AAZ33670.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157574|gb|EFH98654.1| Flagellar hook-associated protein flgK [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325100|gb|EFW81169.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 686

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 42/147 (28%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T     +          G  +           AG  D  N       +      V 
Sbjct: 540 YTDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     + +  +             S  V      +  +  GV+L EE + LI
Sbjct: 600 NGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|320329359|gb|EFW85352.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 686

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 130/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVNLNGNALAA 413



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 42/147 (28%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T     +          G  +           AG  D  N       +      V 
Sbjct: 540 YTDNTTTPAGKTAFEVQMTLSGSPLVNDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVT 599

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     + +  +             S  V      +  +  GV+L EE + LI
Sbjct: 600 NGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|57238490|ref|YP_179621.1| flagellar hook-associated protein FlgK [Campylobacter jejuni
           RM1221]
 gi|57167294|gb|AAW36073.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni RM1221]
 gi|315058921|gb|ADT73250.1| Flagellar hook-associated protein flgK [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 608

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AVESIVRLHDEYSYYKLKGASTQLEYTKYIASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510



 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 129/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     ++            A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|205356101|ref|ZP_03222868.1| putative flagellar hooK associated protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205345944|gb|EDZ32580.1| putative flagellar hooK associated protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 608

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 129/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     ++            A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|157415691|ref|YP_001482947.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386655|gb|ABV52970.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307748332|gb|ADN91602.1| Putative flagellar hook-associated protein FlgK [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315930976|gb|EFV09951.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 608

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/514 (11%), Positives = 145/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N  + A
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNDHNA 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 128/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     +             A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|86151883|ref|ZP_01070096.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315124902|ref|YP_004066906.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840991|gb|EAQ58240.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315018624|gb|ADT66717.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 608

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNDNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 129/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     D+            A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|148925638|ref|ZP_01809326.1| putative flagellar hook-associated protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845648|gb|EDK22739.1| putative flagellar hook-associated protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 608

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510



 Score = 89.7 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 129/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     ++            A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|255262922|ref|ZP_05342264.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62]
 gi|255105257|gb|EET47931.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62]
          Length = 422

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/487 (10%), Positives = 117/487 (24%), Gaps = 72/487 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M++ +  N         + + A+I  NI N+    Y R               T  +   
Sbjct: 1   MTISSSLNAGIAGLAANASKLATISDNIANSSTFGYKRAGADFHSLVTGSGNGTYSAGGV 60

Query: 61  NMFDKV-------LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           ++  +        L + S+A       +    +      +   +          R     
Sbjct: 61  SVTTQRMVDARGSLVSTSNATDLSISGRGMLPVTNRSGVESGDSAMMLTSTGSFRTDSNG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y       +L     D    V      +   +Q I+ D        +      +     +
Sbjct: 121 YLTTSGGLVLMGVPADGDGVVPTFSRDTQAALQPIKID----RTKFVGEPTTSIQLGVNL 176

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
                   A        ++  D L    + I+  +    N  +M                
Sbjct: 177 PATDAVAGALGSAQELAVEYYDNLGNSENLIVTFTPTGSNEWEMAFSDPS---------- 226

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                    +  +  +     D +  S    +    G+I+  +                 
Sbjct: 227 --LTTYTLLFDDSRSNGGALADIMDSSGASIATSFTGEIELTMDA--------------- 269

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                      +     S                +K    +   I +    +     + D
Sbjct: 270 ------GPISVNIGELGSGGGLSQLGGTFAPTSISKNGSPVGNMISIEVNEKGIVQGIFD 323

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G+    +   + ++     L      +F+ +                            
Sbjct: 324 TGTTRALYQVPIVDVPNPNGLKAGNQQTFSIS---------------------------- 355

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S S  L          +          ++  EL+ LI+ +++Y+ + K+I   D+MLQ
Sbjct: 356 QNSGSFYLWDAGAGPVGDVVSYAREESTTDVAAELTQLIQTQRAYSTNAKVIQTVDEMLQ 415

Query: 474 TLLEGVK 480
                 +
Sbjct: 416 ETTNIKR 422


>gi|261211322|ref|ZP_05925610.1| flagellar hook protein FlgE [Vibrio sp. RC341]
 gi|260839277|gb|EEX65903.1| flagellar hook protein FlgE [Vibrio sp. RC341]
          Length = 434

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 114/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        S+
Sbjct: 63  VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D    +  E   +           
Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A     A+     D  D     +         ++    ++    Y      L +    +
Sbjct: 157 TANIELGANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T E     + G   S              +    D  +    N    + 
Sbjct: 217 TWQTYYTVTDKTGEKPVNVVGGDAASPTGHVGHT------MRFNNDGTLASLNNGQPIVT 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  +  D    +                     Q +S ++    Q+ +     +  
Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFSLDSATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +      ++  F  IS        +++ +EL  LI  ++++  +++ +   + + Q 
Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|221069322|ref|ZP_03545427.1| flagellar basal body FlaE domain protein [Comamonas testosteroni
           KF-1]
 gi|220714345|gb|EED69713.1| flagellar basal body FlaE domain protein [Comamonas testosteroni
           KF-1]
          Length = 422

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/483 (9%), Positives = 110/483 (22%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQ 55
            F +  +  N AS+    I  NI N+    +                      +   V  
Sbjct: 2   GFQQGLSGLNAASKNLDVIGHNIANSSTTGFKASRADFAEMIASAIGSASGQSSGIGVNV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            + ++      + +  + +        F  +K+         +             E   
Sbjct: 62  AAVSQQFRQGSITSTGNNLDLAINGNGFFVVKQ------SDGSIAYTRAGNFGLDKEGNL 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           K +  D +   V+D     +Q+  T              +    ++      +  T    
Sbjct: 116 KTVDNDNVMGYVVDPTTGKIQSGATPVPMSFPTGQPIPAKQTSTVNVELNLDARATDAAG 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                                +       I ++     +      T +   +F ++    
Sbjct: 176 DATATPPVAATPRATYGTSLNVYDTQGTAIPVNLYFEKD-----ATGNTWNIFNSLDASA 230

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                  +  + +   +  +     S     +                            
Sbjct: 231 TPIGTAVFDASGKLTSVTPNAPTTGSGTTLDLS--------------------------- 263

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                  I+ G  + +      ++       Q+ +  +      
Sbjct: 264 -----------------------ISGGTANPNGLPAFDVAFDFGGLTQFGTKFAVSSLKQ 300

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N+     ++  Y +   +      +A       L     N   W+  + 
Sbjct: 301 DGYTSGALTGINVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNK--WVATSD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  +         V+L  EL  ++  ++SY  + + I   D++  TL
Sbjct: 359 SGPALNGSAQTGTFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTL 418

Query: 476 LEG 478
           +  
Sbjct: 419 VNL 421


>gi|262404540|ref|ZP_06081095.1| flagellar hook protein FlgE [Vibrio sp. RC586]
 gi|262349572|gb|EEY98710.1| flagellar hook protein FlgE [Vibrio sp. RC586]
          Length = 434

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/484 (8%), Positives = 116/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YISLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        SY
Sbjct: 63  VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDKMVPQQNE---LTRNGAFHLDKNSY 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D+   +  E   +           
Sbjct: 117 MVTANDEFLLGY--------------------EVNPDSGDVLSYEPKPINIPPQFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A     A+     D  D     +         ++    ++    Y      L +    +
Sbjct: 157 TANIDLAANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMTQAN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T E     + G   S              +    D  +    N    ++
Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDATSPKGHVGHT------MKFNNDGTLASLNNGQPIVS 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L    +  D    ++                    Q +S ++    Q+ +     +  
Sbjct: 271 EALGAGANPVDLNGADA-------------------TQTLSFSLDNATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGQNTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        ++  F  +S        +++ +EL  LI  ++++  +++ +   +++ Q 
Sbjct: 370 FSGDKIWGESNKGSFGSVSNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|253998482|ref|YP_003050545.1| flagellar hook-associated protein FlgK [Methylovorus sp. SIP3-4]
 gi|253985161|gb|ACT50018.1| flagellar hook-associated protein FlgK [Methylovorus sp. SIP3-4]
          Length = 647

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 134/407 (32%), Gaps = 14/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N  ++  N A    +    NI NA +  Y R+    + +           +   V 
Sbjct: 3   SDILNIGKSALNAAQIGISVTGNNISNASSAGYNRQVISQSAAASQNVGFGYLGKGTQVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +       +  K ++   +   +     S  +    M AD   +   +  +    DS++ 
Sbjct: 63  SIERVYSALLAKQVNVSQARSSELSTYSSQISSINNMLAD--SSAGLSPALQDFFDSVQD 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N       + ++ ++E +   F + +  + ++    + ++    S +  +  ++  +
Sbjct: 121 LTNNPGSASSRQAMLSSSEALASRFQSLSSRLTEMENSVNSQLRSSTSLVNSYAQQIASL 180

Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ND+I     A+    +D +DQRD+L+ K+S  I  + +   N+   V+  +G  L     
Sbjct: 181 NDSINNAMGATGKTPNDLMDQRDLLVSKMSSQIKTTIVQSGNSY-NVFVGNGLPLVVDKE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +    T         G        ++V  G +  L+Q R+  +   +NQL +
Sbjct: 240 SYSLSVVNSPTDSTRLEVAYSGKGGTPIILGENSVTGGTLGGLVQFRNHSLDTTKNQLGQ 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  +F+ +  +  +     G+   + I              +       ++     
Sbjct: 300 IAISLTETFNAQQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTS 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           D                      N+       + +   V+    +  
Sbjct: 360 DYTLTYNGGTNYSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSG 406



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/336 (8%), Positives = 76/336 (22%), Gaps = 4/336 (1%)

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
           + +   D      ++        +    +       +                  +    
Sbjct: 311 QQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTSDYTLTYNGGTN 370

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            S    ++     YTS   T+        +    +      +        + VS      
Sbjct: 371 YSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSGDNFLIQPTADAARQISVSITGTDQ 430

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLD----EMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
           +         +   +      + L      M      + +        + N      A  
Sbjct: 431 IAAASPLIAAKSSSNTGSGAISNLTVNSAYMGSPFSSALTLTYNSGTGTLNGFPATEAVT 490

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           +K          +          +                 +   L       +    + 
Sbjct: 491 VKTSSGTTTTYAAGAAVPYTAGATYTVAGASFTMGGTPNNGDSFTLTPSTGSSSGNNTNA 550

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                    + ++ N +        +  +    S+          +         +  GV
Sbjct: 551 LLLAKLQTASTVSGNKSYEAAFAQIVSAVGNKTSELQVTGAAEATLLEQAQAEMESNSGV 610

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           NL EE + L++ +QSY  + K++    +M  TL+  
Sbjct: 611 NLDEEAANLLRYQQSYQAAAKVMQIASQMFDTLINI 646


>gi|302669847|ref|YP_003829807.1| flagellar hook-associated protein FlgK2 [Butyrivibrio
           proteoclasticus B316]
 gi|302394320|gb|ADL33225.1| flagellar hook-associated protein FlgK2 [Butyrivibrio
           proteoclasticus B316]
          Length = 615

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/440 (12%), Positives = 128/440 (29%), Gaps = 16/440 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49
           S     N A +    ++    +   NI NA+   Y R+      S               
Sbjct: 3   SQFFGLNIAASGLRASNASLNTTANNIANANTDGYSRQKVTQAASNALRVFATYGCAGAG 62

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V  +       + +D     +   +G       +  L E    DD  N+  +   +K+  
Sbjct: 63  VDTLAIDRVRDSFYDVKFRNNEQLLGNASQKNYYNQLVEKYL-DDDGNSGFSTLFNKMEA 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           SLES            T I   + V + FN     +Q  +AD + EI+L    +     E
Sbjct: 122 SLESVMTAAGTTETKSTYISQLKSVTEYFNNVYNNLQNEQADINAEIKLCADRISSIAQE 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  VN  I     +   A++  D+RD ++ ++S+++ I T      D    +        
Sbjct: 182 IASVNKQINVIEMTGAKANELRDKRDTMVDELSKMVSIETKETPVIDENNPSRVTGATRY 241

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +    ++E +++Y    +   +  D    +                  +D       + 
Sbjct: 242 QIWIAGSYELVDTYDF-RKMICVARDEDGSTDQNDIQGLFDIKWGYGSYKDGDNVNELSD 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
               ++++ G       +   +        +   + + +++   +               
Sbjct: 301 FTLDSQLIGGELQGLLAMRDGNNGQYFHGKSANAEWVGDQMVVTVEVDATYLKDMTKCT- 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +   G++         +   Y     +      +     P  G    +      +    
Sbjct: 360 -IPKEGNIHIGPKDYKYDSWTYNGDSTYTFVIDKETLTSVPDVGRGVQIGYANSYQGIPY 418

Query: 410 WLEKNRSDSHDLHMKSQVVF 429
           ++ +           +  + 
Sbjct: 419 YMAQMNEWLRQFSDATNEIM 438



 Score = 83.5 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 7/356 (1%)

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
               +   E+   + N               +    ++ L  F  +  ++   ++   A 
Sbjct: 259 KMICVARDEDGSTDQNDIQGLFDIKWGYGSYKDGDNVNELSDFTLDSQLIGGELQGLLAM 318

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
           +   +           +      + T+  +   +   T         +       K +S+
Sbjct: 319 RDGNNGQYFHGKSANAEWVGDQMVVTVEVDATYLKDMTKCTIPKEGNIHIGPKDYKYDSW 378

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T   +S   F+      ++        +I          +P +  Q++E  R    + +E
Sbjct: 379 TYNGDSTYTFVIDKETLTSVPDVGRGVQIGYANSY--QGIPYYMAQMNEWLRQFSDATNE 436

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                  S+++ G+ I  G  D  N L Q   E +    + +          +V+   L 
Sbjct: 437 IMVNGYTSDSLEGINILTGTMD-TNSLAQYSYEQLTTLSENKGYYFLTGGNFAVNAVLLD 495

Query: 364 NVKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
           N   LA   D+    + + +      +FD         +  E+    +  +  N+S+S+ 
Sbjct: 496 NADRLATKADVTEGESEFMNLKKLKEMFDTKKIFRGATS-GEFLTKVLADVALNKSNSNT 554

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           L    + + N I     +  GV+  EE S L+K + +Y +S+K+I    ++   L+
Sbjct: 555 LEETYKSLENTIDNQRLSDSGVDEDEEASNLVKYQNAYALSSKMIQTLSEIYDRLI 610


>gi|109947182|ref|YP_664410.1| flagellar hook-associated protein FlgK [Helicobacter acinonychis
           str. Sheeba]
 gi|109714403|emb|CAJ99411.1| flgK [Helicobacter acinonychis str. Sheeba]
          Length = 606

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/431 (13%), Positives = 124/431 (28%), Gaps = 35/431 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +      +           +          S           D    S    +    +S 
Sbjct: 63  IEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLIDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVIKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHNIEGEPVEFNDNEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +  +   Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFDLI-AYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNKDNNAENDFD 420

Query: 389 DPVAGINTNVT 399
           D       N T
Sbjct: 421 DYFTASFNNET 431



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 102/340 (30%), Gaps = 6/340 (1%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTLKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHNIEGEPVEFNDNEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     ++    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNKDNNAENDFDDYFTASFNNETKKFIIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           S  S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASTISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +     +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKQMKISEFYQFLTSKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|121612872|ref|YP_001001115.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249591|gb|EAQ72550.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 608

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/514 (10%), Positives = 144/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINTSFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASNM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLSGVDSGNDMANKIIQLQ 510



 Score = 89.7 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 128/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     ++                  + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNNKNSNDDVDDHINTSFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLS----GVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|124268254|ref|YP_001022258.1| flagellar basal body and hook protein [Methylibium petroleiphilum
           PM1]
 gi|124261029|gb|ABM96023.1| flagellar basal body and hook protein [Methylibium petroleiphilum
           PM1]
          Length = 420

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/483 (12%), Positives = 120/483 (24%), Gaps = 75/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQ---- 55
            F +  +  N AS+    I  N+ NA                    +     +V      
Sbjct: 2   SFQQGLSGLNAASKNLEIIGNNVANASTFGAKSSRAEFGDVYANALNGSGTNMVGIGVNL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      +    + +        F  + +        N +      + +   E + 
Sbjct: 62  ATVAQQFTQGNITTTDNPMDLAINGSGFFQVSD------GKNPTMYARNGQFKIDREGFI 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L     D    +V     +              I+L  + +    ++   +  
Sbjct: 116 VNNSGYKLLGYPADGQGVIVPGQAQA--------------IQLPTAGIAPRATDRIAIEM 161

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +  + A    A   +D  D                 N   + VY + G  +  T     
Sbjct: 162 NLDARQAVTTPATGGIDFDD------------PATYNNATSVTVYDAKGQDVALTYYFQK 209

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +        VT+   PI +DG   +    +                              
Sbjct: 210 SGADQWDVYVTANGTPISVDGTGAALPSTT------------------------------ 239

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            +    +   P A        +               GI   +    QY S         
Sbjct: 240 -MTFPANGSAPTAPVGAVPINIPATTNAAGGTTLPITGIELDVTSATQYGSGFGVTDMSQ 298

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +       +  ++     ++  Y +  +K      +A       L     N   W     
Sbjct: 299 TGYAPGQLSGISIEANGVIMARYSNGQSKPGGQLELANFRNPQGLQPLGNNV--WATTFT 356

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +       F  +         ++L  EL  +I  ++ Y  + + +   D M+QTL
Sbjct: 357 SGDPVVGAAGDGNFGVLQSGALEESNIDLTGELVNMITAQRVYQANAQTVKTQDSMMQTL 416

Query: 476 LEG 478
           +  
Sbjct: 417 VNL 419


>gi|68164540|gb|AAY87269.1| predicted flagellar hook-associated protein 1 [uncultured bacterium
           BAC17H8]
          Length = 1404

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/409 (13%), Positives = 124/409 (30%), Gaps = 21/409 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------SPE 48
           +  +F+  ++  N+  Q  A   +NI N +   Y RR                    S  
Sbjct: 1   MANLFDIGRSGLNSYRQGLAITGQNIANINTDGYKRRGAELEELSAAKASVLESSQGSGM 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V + T R            +  +         S  +  E +      + +  + I +  
Sbjct: 61  GVRIGTIRRAFDEFLLNKARSAIAYSESTSAFASAASQIENILL--PGDANLGNVIGRFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           + L+  + + ++ I     I+ A++V  NF      + +++     + E  +  +    +
Sbjct: 119 EGLQEIASDPADLIGRTVAIEQAKQVSDNFKQLHSLLDEMKGGLFTQAEHMLDEVNVLTA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           EL  +N  +   + +K + +  LD RD L+ K++E + +S  +       V   +     
Sbjct: 179 ELQRINKQLAAGSQTKAN-NSLLDARDNLIDKLNEYVEVSVSLDKRGAARVILGN----N 233

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
              P  +  EK++S  V  E++ +       +    +    G     L    +       
Sbjct: 234 PNGPALVTPEKVSSLGVEQEASELLFFIEPQAEKILTKRVDGGAVHGLATAYNTAVEVMA 293

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           ++D +A  ++   +         E   G      ++           +          + 
Sbjct: 294 EVDGLAFEMVRDINAIHRQGLTLEGEAGGDFFQSLRLDLAASPVNTGDASATLRVLNPDA 353

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              +                A    L+     S   N +     G    
Sbjct: 354 ITSQRVKFNYDDDSDMWNGTANDGSLVVKGRHSVAFNGVEITFIGQANQ 402



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/482 (9%), Positives = 114/482 (23%), Gaps = 15/482 (3%)

Query: 4    LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
             A  +      +  +    +    I N  +      +  +  S   V  V   + N    
Sbjct: 932  SAAMSSGNA--SAIATAINTA---ISNNASDGDGGANMSSVASATAVGKVVTLTVNDGTK 986

Query: 64   DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
             ++L   ++ +       +   +    +     +   +     +RD     +K  +  + 
Sbjct: 987  VEILRDGNT-LSTGAGKVTVNPVTSGGAQKTLDDAYVSPGYELVRDGKNVSAKVQAAGVS 1045

Query: 124  GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
              +            N    ++     D      +         +        I    A 
Sbjct: 1046 DDSFTVAGTGSASQTNNI--KLTFSEDDTYDFALVFDDKPNSGATSANNKQLDINATVAG 1103

Query: 184  KHDAHDFLDQRDVLLQ------KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                       + L         +S +  +S        + V             R  + 
Sbjct: 1104 GDATAIANAINNALANNFLNGADMSGVASVSVSGNE-VTLTVNDGSKVEFLRIGNRISSG 1162

Query: 238  EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                +    +                       +   L  + D  + +F          +
Sbjct: 1163 TGQITIDPVTLGGSKKTLADAPVITASGKSLVDQRLILSDLPDEELIVFIGDQGAKRVAM 1222

Query: 298  IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  +       +    +  A+             S             +   D    
Sbjct: 1223 QFDELPEGAPRLMRDIEIRVKDAETNTVEFFDAETQTSIATRTLDAESRTSAVGFDFELD 1282

Query: 358  SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +  +++          +      + +P +         +   N++  L      
Sbjct: 1283 GTFDADDKFHISANTSGTGDNRNLQAILDLQNPPSDGRVTGGFQKKFNNAVSRLGAIVQS 1342

Query: 418  SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                   +  +     E+ S   GVNL  E + LI+ +Q+Y  S +++    ++ +TLL 
Sbjct: 1343 GKIAAESAVSLREASIEAESAYSGVNLDTEAANLIQQQQAYQASARILSTARELFETLLR 1402

Query: 478  GV 479
             V
Sbjct: 1403 VV 1404


>gi|330967097|gb|EGH67357.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 686

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/417 (11%), Positives = 128/417 (30%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L   ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNGYLDAQLQTSTALSADAVAYSGQASKTDTLLSD--SATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNEAVRQLNGLVGVKVVENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVITGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +          + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYANINSADAISQRSTGKATNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413



 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T     +          G  ++          AG  D  N       +      V 
Sbjct: 540 YTDNTTTPASKTAFEVQMTLSGSPLANDTFSIGLTGAGSSDNRNALAIVGLQTAKTVGVT 599

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     + +  +             S  V      +  +  GV+L EE + LI
Sbjct: 600 NGGVGTSLSGAYSDLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAANLI 659

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 660 KYQQYYTASSQIIKAAQTIFSTLINSL 686


>gi|315654567|ref|ZP_07907473.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC
           51333]
 gi|315491031|gb|EFU80650.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC
           51333]
          Length = 681

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/486 (12%), Positives = 133/486 (27%), Gaps = 43/486 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  +  N        A +      +NI N +   Y R+                      
Sbjct: 3   STFSSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQ 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +   R  +    D  L   +      +   +     E    D+    S +  +  
Sbjct: 63  GGGVEITRIRRLDDFFLDAKLRLETGRAAGTKETSAAWKGIESAM-DELGRMSVSDSMRT 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              S    + N        + +  AE +V N  T    +  +  +  ++++  +++L   
Sbjct: 122 FFKSWGDVNNNSDNRGARASTLGAAEALVTNIKTGYTHINDLWKNGREQLDALVADLNTT 181

Query: 167 LSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTI-----------V 211
           +  +  +ND I+  T S  +A        D+RD L+  IS++ G +              
Sbjct: 182 MDSVQKLNDRIRKTTVSGGNASGAVNHLKDERDQLIMHISKLTGATVRQGYSVYTKENAP 241

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS----SNQGSAV 267
             +     Y      +       +  + +N + V    +   ID         +      
Sbjct: 242 HPSMIGQAYEDGTVEVMLGGNSLVGKDYVNHFEVEGARDMAGIDAAPRDKYKAAIDALKA 301

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARV---LIGSFSEKDPIAGNSENVPGLFIADGIK 324
                    +     +  +Q  +         L    S K   +G+ E          ++
Sbjct: 302 GGKNTDTTFEYHGQKIQKYQAHVQRYEVGDKILNPDGSTKTLKSGDPEVGTKYVAFYDME 361

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D+     +     +    Q  +  +F++D G    ++      +A     I     +   
Sbjct: 362 DVQKGTKKLKEAKVEKTEQGFTEFTFMKDEGPARLRWELGGHVVAIEDGTIGGLMQNLKP 421

Query: 385 NFIFDPVAGINTNVTLLE---YARNSIGWLEKNRSD--SHDLHMKSQVVFNHISESYSNT 439
                    I +     E      +    L    +   ++++          +    +  
Sbjct: 422 AQFPGVSGTIGSGGAWAETGKLYNDLATNLADEINGIHANNIAEGGTNNTKTLVTKETKF 481

Query: 440 VGVNLQ 445
             V+L 
Sbjct: 482 YKVDLT 487



 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 374 LINHYCDSFNKNFIFDPVAG-INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
               Y +      +   +    +   + +     S+  +  +   + D H  ++      
Sbjct: 574 AAGQYINGVYDGSVSLALGNRQDAPTSAMNEWSKSVVDIGVHAKGADDKHTLAEQTRQIA 633

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +   +   V++ EE+  LI+ + +Y  + +++   + ML+ L+   +
Sbjct: 634 EQQQKSQSSVDMNEEVINLIQGQHAYAGAARIMSTVNSMLEALINIGR 681


>gi|317177869|dbj|BAJ55658.1| flagellar hook-associated protein FlgK [Helicobacter pylori F16]
          Length = 606

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIARPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKETSAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 EINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESQNKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 124/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESQNK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDVKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|319403978|emb|CBI77566.1| Flagellar hook protein FlgE [Bartonella rochalimae ATCC BAA-1498]
          Length = 402

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/481 (7%), Positives = 120/481 (24%), Gaps = 80/481 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +  +     +  N    + + +  N+ NA    Y R +   +                
Sbjct: 1   MGIYGMMRTGVSGMNAQGTRLSGVADNVANAGTIGYKRTNVQFS---------------- 44

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     S                ++           +       +     +    +
Sbjct: 45  -----NYVTPSGQYAYVSGGVKSHIGHDISIGGPARATGRSGDTMIHGNGFFRVADENGK 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      ++     NT+   +                       +   +       
Sbjct: 100 EFLTRAGSFVRDKDGYLRNTAGYYL--------------------LNEDGEKIQIKGGPT 139

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                +A   +D +         +      +              T +++  + +  +  
Sbjct: 140 DLFGPEATTKIDFKVNFNPSAKVVEPKDGKIDPEKPETYSQKKSMTTYDSQGKKVQVDFY 199

Query: 241 NSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              T  ++     + DG  V S + +   +G + A  +     +P  +    E+     G
Sbjct: 200 MRKTAENKWVVDAYSDGKKVGSTEFNFDKEGNLIAPTKEFKLTLPDSEGNTFEVNVNFGG 259

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             ++                                         + N           +
Sbjct: 260 VGADSLVT------------------------------------QKGNLFAFEGEADGME 283

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
              ++        ++   Y +   +   +  V  + +  +L  +   ++           
Sbjct: 284 SGAFDGFTFGKNGEIEVMYSNQKTRTIGYIGVTTVASPDSLT-FLGGTVFETNSQT-GPQ 341

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +      VF  +S  Y     V++ +EL+ +I+ +++Y  ++K+     +++  ++   
Sbjct: 342 MMGRPGDGVFGTLSSGYLEDSNVDMGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLK 401

Query: 480 K 480
           +
Sbjct: 402 R 402


>gi|313200557|ref|YP_004039215.1| flagellar hook-associated protein flgk [Methylovorus sp. MP688]
 gi|312439873|gb|ADQ83979.1| flagellar hook-associated protein FlgK [Methylovorus sp. MP688]
          Length = 647

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 133/407 (32%), Gaps = 14/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N  ++  N A    +    NI NA +  Y R+    + +           +   V 
Sbjct: 3   SDILNIGKSALNAAQIGISVTGNNISNASSAGYNRQVISQSAAASQNVGFGYLGKGTQVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +       +  K ++   +   +     S       M AD   +   +  +    DS++ 
Sbjct: 63  SIERVYSALLAKQVNVSQARSSELSTYSSQINSINNMLAD--SSAGLSPALQDFFDSVQD 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N       + ++ ++E +   F + +  + ++    + ++    S +  +  ++  +
Sbjct: 121 LTNNPGSASSRQAMLSSSEALASRFQSLSSRLTEMENSVNSQLRSSTSLVNSYAQQIASL 180

Query: 174 NDAIKFKT-ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ND+I     A+    +D +DQRD+L+ K+S  I  + +   N+   V+  +G  L     
Sbjct: 181 NDSINNAMGATGKTPNDLMDQRDLLVSKMSSQIKTTIVQSGNSY-NVFVGNGLPLVVDKE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +    T         G        ++V  G +  L+Q R+  +   +NQL +
Sbjct: 240 SYSLSVVNSPTDSTRLEVAYSGKGGTPIILGENSVTGGTLGGLVQFRNHSLDTTKNQLGQ 299

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  L  +F+ +  +  +     G+   + I              +       ++     
Sbjct: 300 IAISLTETFNAQQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTS 359

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           D                      N+       + +   V+    +  
Sbjct: 360 DYTLTYNGGTNYSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSG 406



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/336 (8%), Positives = 76/336 (22%), Gaps = 4/336 (1%)

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
           + +   D      ++        +    +       +                  +    
Sbjct: 311 QQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAVTTSDYTLTYNGGTN 370

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            S    ++     YTS   T+        +    +      +        + VS      
Sbjct: 371 YSVKRLSDGTTTNYTSMPITIDGVSISVSSGTMSSGDNFLIQPTADAARQISVSITGTDQ 430

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLD----EMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
           +         +   +      + L      M      + +        + N      A  
Sbjct: 431 IAAASPLIAAKSSSNTGSGAISNLTVNSAYMGSPFSSALTLTYNSGTGTLNGFPATEAVT 490

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           +K          +          +                 +   L       +    + 
Sbjct: 491 VKTSSGTTTTYAAGAAVPYTAGATYTVAGASFTMGGTPNNGDSFTLTPSTGSSSGNNTNA 550

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                    + ++ N +        +  +    S+          +         +  GV
Sbjct: 551 LLLAKLQTASTVSGNKSYEAAFAQIVSAVGNKTSELQVTGAAEATLLEQAQAEMESNSGV 610

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           NL EE + L++ +QSY  + K++    +M  TL+  
Sbjct: 611 NLDEEAANLLRYQQSYQAAAKVMQIASQMFDTLINI 646


>gi|319405421|emb|CBI79040.1| Flagellar hook protein FlgE [Bartonella sp. AR 15-3]
          Length = 402

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/480 (7%), Positives = 117/480 (24%), Gaps = 78/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+  +     +  N    + + +  N+ N     Y R +   +                
Sbjct: 1   MSIYGMMRTGVSGMNAQGTRLSGVADNVANVGTVGYKRTNVQFS---------------- 44

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     S                ++  +   +    +  +          +    +
Sbjct: 45  -----NYVTPSGQYAYVPGGVKSHIGHDISISGPAHATGRSGDVMIHGSGFFRVADENGK 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      ++     NT+   +     +  +             +            
Sbjct: 100 EFLTRAGSFTRDKGGYLRNTAGYYLLNEDGERIQIKGGPTDLFGPEATTKIDFKANFNPS 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                     +D  D                     M  Y S G  +          E  
Sbjct: 160 AKVVESEDGEIDPDDPK------------SYSQKKSMTTYDSQGKKVQVDFYMRKTAENK 207

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                       + +G  V S + +   +G +    +     +P  + +  E+     G 
Sbjct: 208 WVVDA-------YSNGEKVGSTEFNFDKEGNLIEPTEEFKLTLPDSEGETFEVDVNFGGV 260

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            ++                                         + N           + 
Sbjct: 261 GADSLVT------------------------------------QKGNLFAFEAEADGMES 284

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
             ++        ++   Y +   +   +  +  + +  +L     +       +++ +  
Sbjct: 285 GAFDGFTFGKNGEIEVMYSNQKTRIIGYVGMTTVASPESLTFLGGSVFET--NSQTGAQM 342

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +      VF  +S  Y     V++ +EL+ +I+ +++Y  ++K+     +++  ++   +
Sbjct: 343 MGRPGDGVFGTLSSGYLEDSNVDIGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLKR 402


>gi|302878276|ref|YP_003846840.1| fagellar hook-basal body protein [Gallionella capsiferriformans
           ES-2]
 gi|302581065|gb|ADL55076.1| fagellar hook-basal body protein [Gallionella capsiferriformans
           ES-2]
          Length = 498

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/504 (11%), Positives = 123/504 (24%), Gaps = 39/504 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
            F +  +  N AS+   +I  N+ NA    + +               +           
Sbjct: 2   SFQQGLSGLNGASRHLDTIGNNVANASTVGFKQSQAQFADMFAASLSGSGAMPIGTGTKL 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      +   ++ +      Q F  L +   A             + +       
Sbjct: 62  VAVAQQFTQGNITNTNNPLDTAISGQGFFRLTDAAGAV------LYSRNGQFQVDKTGNV 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N    I+   + D A  +V+           +         +  +   R     T    
Sbjct: 116 VNNQGHIVSGYLADAAGTIVKQTVPLKITSTNLAPVMTTTTTVGANLDSRAAVPATAAFS 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLL-------QKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            I   + +   +    D             ++    +G  +    +  M V ++ G  + 
Sbjct: 176 TIDPTSYTSSTSLSVFDSLGASHVGTMYFARQPIATVGNGSFAAADTVMTVGSTVGLAVG 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
            TV        +   T  +          VV++   +      +       D+V+     
Sbjct: 236 NTVTLAGTTYTITGVTNATTLAVTPAAAGVVAAAAATTNAPSNLWNTYLTIDNVLVPPIV 295

Query: 289 QLDEMARVLIGSFSEKDPI--------------AGNSENVPGLFIADGIKDLDNKLCQGI 334
                A                                  P       I      +    
Sbjct: 296 APATTATPFATLGFSPTGTLSTLTAGAGSTAGATLGKVTTPSFNPVSTITTSPQTITFDF 355

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           +       Q+  N        +       N  +      ++  Y +  ++      +   
Sbjct: 356 NSLAAGTTQFGGNFGVNTLTQNGYTSGQLNSTSTGTDGTILGRYSNGQSRALGQITLTNF 415

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
                L     N   W+E + S S             +  S +    V+L  EL  +I  
Sbjct: 416 INPQGLQPVGNN--EWVETSASGSPTTGTPGSSSLGMLQASATEDSNVDLTAELVNMITA 473

Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478
           ++ Y  + + I   D +LQT+   
Sbjct: 474 QRVYQANAQTIKTQDSLLQTITSL 497


>gi|242278416|ref|YP_002990545.1| hypothetical protein Desal_0941 [Desulfovibrio salexigens DSM 2638]
 gi|242121310|gb|ACS79006.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 513

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/522 (9%), Positives = 120/522 (22%), Gaps = 51/522 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPEN---- 49
           MSL +      +     S   + +  N+ N+    +   D +          +       
Sbjct: 1   MSLTSSLYTGISGLYVNSFATSVVSNNLANSSTVGFKSSDAIFEDVFYSTLTTGGGLAQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                  + N +         S +         +  + +        + +          
Sbjct: 61  GNGAGVSTINTDYSQGTYQNSSISTNVAINGDGYYMVVD-----PDTSTTYYTRAGNFDF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK---------IRADADKEIELEI 160
             + +  +   + +    ++N             + Q          +  + D +   E 
Sbjct: 116 DKDGFLVDAYGNQVQGWEMENGSASGSLTTIQLDQSQSPPKATSEIALTMNLDSQSVDEA 175

Query: 161 SNLRRFLS----ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                + S         N  +     S        D+          +  +      N  
Sbjct: 176 ITANPYTSLFELYDGTQNPPLDDSQYSYSTTMTVYDENGSAHDMTYYMDPVDVDADGNIV 235

Query: 217 MVV-----------YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
                           SDG  L  T    +      ++    +   +    +  S+   +
Sbjct: 236 WEYVAAYEAEDDMRSGSDGLDLNTTSGAGLAMTGTLTFNSEGQMTSMTAFTLNDSAASTA 295

Query: 266 AVPKG-------KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
                             +   +     + Q       +    +  D   G         
Sbjct: 296 TKDPANWELASLSPAGYPEANLNFTGSAEGQNVSFNFGMSSDNATWDTSGG--ITSLADI 353

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            A               ET        S+ +                  +     LI +Y
Sbjct: 354 TAATDYSDLPSFSDYTLETGATTSYSDSSSATYDIAQDGYPTGSLVSVEVDENGILIGNY 413

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +S +       +A       L         +     S    +       F  +  +   
Sbjct: 414 TNSQSIELFQLGLASFTNESGLKAEGGTL--FRATTDSGEAIIGTAGSSGFGSVVSNALE 471

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V+L  +++ LI ++ SY  ++K++   D +LQT +   K
Sbjct: 472 GSNVDLASQMTELIIIQSSYQANSKVVTTADTLLQTAISLKK 513


>gi|310764860|gb|ADP09810.1| Flagellar hook protein FlgE [Erwinia sp. Ejp617]
          Length = 410

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 114/476 (23%), Gaps = 71/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE--NKNMF 63
            F++  +  N A+     +  NI N+    +                +  +    ++N  
Sbjct: 2   SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFAGAQGMGVQVAGSSQNFK 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D  L      +        F  L +          +      +    +  Y  NL+  + 
Sbjct: 62  DGGLTGTGRNMDMGINGNGFFRLMD------EAGQAYYSRNGQFDTDVNGYITNLTNGLR 115

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                            +   +Q                                    +
Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQ---------------------------------IDKT 142

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                     +       S  +   T   + +     +S     F+++      +     
Sbjct: 143 GMPPVASTSGKLNGNLTASAEVVTKTPFDHTDGETFNSSSQIEAFDSLGNRHTIDIYYVK 202

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T T E      D     ++                                        +
Sbjct: 203 TATGEWKAYANDASAPVTSGTPPKS---------------------------EYTELDIK 235

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGSVSKKFL 362
            D     + +     +      L+      +   +    Q+ S+ S              
Sbjct: 236 FDENGKLTNDAASSILNVKSAGLNGATPLDLQLDLSGITQHESDASTFEPVKTDGHAAGN 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +    ++  +Y +   +      +A       L +   N   W+E  +S    + 
Sbjct: 296 YVNFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNN--TWVESPQSGGSIIG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           M     F  ++        V+L  E+  +I  +++Y  +++ I    +MLQTL+  
Sbjct: 354 MAGTGSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVNL 409


>gi|146277708|ref|YP_001167867.1| flagellar basal body FlaE domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555949|gb|ABP70562.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 423

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/483 (9%), Positives = 107/483 (22%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
             N A +  + A    A+   NI N     +            +           + V  
Sbjct: 2   SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSIARTAVGSGVQT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      + A  + +      Q F A +  +  +                + +  +
Sbjct: 62  LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNDKGVA 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L    +    + +     +A  +              +       ++  ++  
Sbjct: 122 VNASGQKLLAWPVSVEGDALSQVPGTAVPLTIPLTMGSPVGTKAVRMTVDLPTDDAMLGQ 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A+  DA D            +    ++ I   +       +    +    P   
Sbjct: 182 QAAVPPAAAFDAADP-----------TTYAAVTAIPVFDAKGNAVEAAAYFIKTENPAAG 230

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           + +   +  +      +      ++ +   A+  G   +L        P   +       
Sbjct: 231 SPDTGWAVRLVVAGETLTPAEGDLAFDATGALAGGT-GSLSFTTGIGTPYTLDLTGTALT 289

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 +  +                                                  
Sbjct: 290 NRSFEVNTVNQDG----------------------------------------------- 302

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     +   Y    +       +        L +   +  G+     
Sbjct: 303 --KSAAALTSLEVDASGTVWAAYGAGDSVAMGQVVLVTFANPQALRQLGAS--GFAATAD 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  I         V+L EEL  LI  +++Y  S K +  ++ ++QT+
Sbjct: 359 SGQPVAGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTI 418

Query: 476 LEG 478
           +  
Sbjct: 419 MNI 421


>gi|238788315|ref|ZP_04632109.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641]
 gi|238723561|gb|EEQ15207.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641]
          Length = 428

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 105/476 (22%), Gaps = 53/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTPTTTNRRLDLAISQSGFFRMQD------SSGGVYFARNGQFKLDENRNIVNMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    +      +      +      T 
Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQDMIAAKATE 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +   +     DV          IS              +  T ++++           
Sbjct: 151 SGNMVANLTSTHDV----------ISATFDPEKPDTYSFVNNMTTYDSLGNRHVINVYYV 200

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +N              +      +    +  D   P   +    M     G+  
Sbjct: 201 KTAEDAANGNTW-------AVYTKDSSATLADATKPFDPTDPAAASLRGTMVFDTNGALK 253

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 G +                               Q       +    +      
Sbjct: 254 TVANGGGAASATNFNMTIPMGVVNGAPAQTFALNVAGSKQQNTGTDGIVTQNQTGYAAGE 313

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +   +    L     N   W E   S +  L 
Sbjct: 314 FTGFQINNDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLSPEGDNV--WKETKSSGNPILG 371

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 372 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 427


>gi|183598617|ref|ZP_02960110.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827]
 gi|188020796|gb|EDU58836.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827]
          Length = 406

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/476 (11%), Positives = 123/476 (25%), Gaps = 75/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS    SI  NI N+    +    T          V       +  +N 
Sbjct: 2   SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +               F  +++         +       +          N     
Sbjct: 62  KDGPITRTDRPTDVAISGNGFFRVQDQ------NGDIFYSRDGQFIRDKSGNLVNNQGMT 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        E            V        + + +    +    S+L  +   +  +  
Sbjct: 116 VTGYPAGLDEN---------GNVVVQSGGVPQGLNIPTDMMDAQASDLAKLTINLNSEDK 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K    D  +  D      S  +       N +++ VY      +     +   + K   
Sbjct: 167 VKSKPFDINNPDDTGSYNFSTTMTAFDSQGNTHEISVYF-----VKTDDNKWTAYAKDAG 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V  +   +  DG    ++  +AV     + L    +  +                   
Sbjct: 222 DKVAKKLGDMEFDGNGRLNSPTNAVFAFDYQGLNGANNGTLQ------------------ 263

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                            +      Q  S  S      +      
Sbjct: 264 --------------------------------IDLNKTRQQKVSESSVSAIDVNGYPAGE 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++ +Y +   +      ++       L+    N   W   N S +    
Sbjct: 292 YTNFKVEDNGLIVANYSNQQKRVVGQVALSAFANPNGLVSQGGNV--WAPSNASGNPMDG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++     +  V++ +EL  +I ++++Y  + + I   D+MLQT++  
Sbjct: 350 VPGVGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVNL 405


>gi|319898656|ref|YP_004158749.1| flagellar hook protein FlgE [Bartonella clarridgeiae 73]
 gi|319402620|emb|CBI76165.1| Flagellar hook protein FlgE [Bartonella clarridgeiae 73]
          Length = 402

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/480 (7%), Positives = 118/480 (24%), Gaps = 78/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +  +     +  N    + + +  N+ NA    Y R +   +                
Sbjct: 1   MGIYGMMRTGVSGMNAQGTRLSGVADNVANAGTVGYKRTNVQFS---------------- 44

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     S                ++  +   +    +       +     +    +
Sbjct: 45  -----NYVTPSGQYAYVPGGVKSHIGHDISISGPAHATGRSGDAMIHGNGFFRVADENGK 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      ++     NT+   +     +  +            ++            
Sbjct: 100 EFLTRAGSFTRDKDGYLRNTAGYYLLNEDGERIQIKGGPTDLFGPEVTTKIDFKANFNPS 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                     +D +D                     M  Y S G  +          E  
Sbjct: 160 AKVMEPEGGQIDPKDPK------------SYNQKKSMTTYDSQGKKVQVDFYMRKTAENK 207

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                       + +G  V S   +   +G +    +     +P  + +  E+     G 
Sbjct: 208 WVVDA-------YSNGEKVGSTDFNFDKEGNLIEPTKEFKLTLPDSEGKTFEVDVNFGGV 260

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            ++                                         + N           + 
Sbjct: 261 GADSLVT------------------------------------QKGNLFAFEAEADGMES 284

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
             ++        ++   Y +   +   +  +  + +  +L     +       +++ +  
Sbjct: 285 GAFDGFTFGKNGEIEVMYSNQKTRIVGYVGITTVASPESLTFLGGSVFET--NSQTGAQM 342

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +      VF  +S  Y     V++ +EL+ +I+ +++Y  ++K+     +++  ++   +
Sbjct: 343 MGRPGDGVFGTLSSGYLEDSNVDMGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLKR 402


>gi|294084412|ref|YP_003551170.1| flgK flagellar hook-associated protein 1 [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663985|gb|ADE39086.1| FlgK flagellar hook-associated protein 1 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 1402

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 118/350 (33%), Gaps = 22/350 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48
           + ++F+  ++  ++  Q  A   +NI N +   Y RR+                   S  
Sbjct: 1   MASLFDIGKSGLSSYRQALAVTGQNIANINTDGYKRREANLEEIQGSTGSVNSVPDQSGL 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   R            A SS         S  +  E +       ++    +++  
Sbjct: 61  GVRVTDVRRSFDEFLLNKARATSSYAEGAEAYSSNISNLEDVLL--PGEHNLGSMLAQFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           D L+  S   ++       ++ A  + ++F   + E+  ++    ++    I +L   ++
Sbjct: 119 DGLQEVSVAPADRAPRTVALEQANALAESFRQLSTEMTAVKKGIVQQTNQNIRDLNGLVA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           EL  +N +I   TA+K +    LD RD L+ KIS  + ++ +   +    +      T  
Sbjct: 179 ELANLNRSIGAGTANKSN--SALDARDALIDKISNYVEVTIVGNEDGSTSLTLGTTGTGP 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V  D             + N  F+ G        S +  G +K L            +
Sbjct: 237 AIVRHDRFATLQVV---EGDKNLSFLIGEGSGFVPTSQIKNGSLKGLSDSFSK-ASETMD 292

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
           ++D +A   +   +       N E +PG            +  Q +   +
Sbjct: 293 KVDGLAYSFVRDINTIHEQGINLEGLPGGKFFQMADIKTIESSQNLGSGV 342



 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/411 (11%), Positives = 106/411 (25%), Gaps = 13/411 (3%)

Query: 69   AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
            + + A  Q      +  L  +       ++  T    K   +        S      + +
Sbjct: 1005 SQNVAEVQSIAGFDYTGLTNLAGQTITLSDGVTTISHKFITA-------PSSVSAIVSAL 1057

Query: 129  DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
             NA          A     +  +         ++  +  + +TV        +       
Sbjct: 1058 QNATGYSNLLFDVATGSNALTLNYKNSGMATTASYTQTTNAVTVEFSTTPSISDVALALQ 1117

Query: 189  DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                  D+     +    ++   +    +    +     F     +I     N      +
Sbjct: 1118 SHSSYADLDFTVSTGTGALTLTYKTQAAVSNAPTAEINSFYDRDFNIKVNGANIIATHID 1177

Query: 249  SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
            S           S  G  V  G +     +        +            +      IA
Sbjct: 1178 STEDLQASATADSLMGQRVTLGDMPDEDLVVVLTGQGARKISATYDVRPPEAKVMIRDIA 1237

Query: 309  GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                +     +     +    +     +                +     K  +    + 
Sbjct: 1238 VTVTDPINGIVDFVDTETGTTMATRTLDAYKEASAKGFAVKLSGELEIEDKFHIATNYDG 1297

Query: 369  AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
             G    +    D    N     + G        E   + +  L  +   S      +Q +
Sbjct: 1298 VGDGRNLKAIIDLQTPNDEELDIGG------FQEVFGSMVAELGSSVRTSKLTLEAAQTL 1351

Query: 429  FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   E+ ++  GVNL  E S LI+ +Q+Y  S +++    ++ QTL++ +
Sbjct: 1352 RDASLEAEASYSGVNLDTEASRLIEQQQAYQASARILSTARELFQTLMQSI 1402


>gi|312962289|ref|ZP_07776780.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens
           WH6]
 gi|311283216|gb|EFQ61806.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens
           WH6]
          Length = 678

 Score =  120 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/403 (12%), Positives = 131/403 (32%), Gaps = 16/403 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVT 54
           ++ N   +  N A    + +  NI N +   Y R+ T                   T+  
Sbjct: 2   SLLNIGMSGLNAAQGSLSVLSNNIANVNTPGYSRQQTTQNAGASNPYGGVYIGTGTTLAD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R    +         ++            A  +   +D   +   +  +S    SL++ 
Sbjct: 62  VRRIYNDFLGAAYQGSTALNSDATTYAGQAAAIDKTLSD--KSTGMSAVLSAFFASLQTA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   S+    + ++ +A+ +   FN  + ++ + +   + ++      + +  S +  +N
Sbjct: 120 AATPSDVSARQLLVTSAQTLSNRFNAISTQLTQQKEGINAQLSTMSDQVNKLTSSIASLN 179

Query: 175 DAIKFKTASKHDAHD-FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             I    +S   A    LD R+  ++ ++E+IG++   +N    +   +  + +   +  
Sbjct: 180 AQITTAQSSSTSAPANLLDARNEAVRSLNELIGVTATEKNGQFSINTGTGQSLVEGNIAN 239

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            I+          +    I ++    + + G+ V  G I  LL+ R   +    N L  +
Sbjct: 240 TISAVPS---KADNSQYTIQLNMGDTAIDIGNVVSGGSIGGLLRYRSDALMPAINDLGRI 296

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A     S + +     +  +  G  +   I        +  + T         N +    
Sbjct: 297 AIATADSVNSQLGQGLDLNSDFGSSLFGDINSAIAIAQRSQASTGNSAGSGNLNVTIADS 356

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
               +  +     +   Y  + +      + +    P   I+ 
Sbjct: 357 SKLSTFDYKVTFTSGNLYNVVRSDGKAMGSFDTTTTPPPVIDG 399



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/347 (9%), Positives = 79/347 (22%), Gaps = 4/347 (1%)

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                 N++      +      ++      +      L  V  +      S         
Sbjct: 336 SQASTGNSAGSGNLNVTIADSSKLSTFDYKVTFTSGNLYNVVRSDGKAMGSFDTTTTPPP 395

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
             D     +     ++             + G ++    P  + F    +   +  +   
Sbjct: 396 VIDGFTLALDGAGPVAAGDSFKISPTANGASGISVELKDPNKLAFAAPLAGNASKTNTG- 454

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                  +    +        A      + +           +                 
Sbjct: 455 ---TGAFTPPTLTVPIDINGGAATAQLRTGIENSMPVKMLFGKPAADGTQPYSISDAQGN 511

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
            +    I  G  +              + P    +      G            N     
Sbjct: 512 PLGTGTIIPGQGNKITINVPMRDAAGALIPGKSFSFDTSVSGAPADGDSTTFSFNSGATS 571

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           D  N       +          N  V+L+      +  +    + ++     +  +    
Sbjct: 572 DGRNAQQLLGLQTKATVGAVDGNAGVSLVSANSRLVSQVGSKAAQANTDSTATGALLAAN 631

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             + ++   VNL EE   +IK +Q Y  S+++I    +   TL+  +
Sbjct: 632 KAASNSVSQVNLDEEAGDMIKFQQYYTASSQIIKAAQETFSTLINAL 678


>gi|302392387|ref|YP_003828207.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204464|gb|ADL13142.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM
           5501]
          Length = 557

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/559 (10%), Positives = 136/559 (24%), Gaps = 83/559 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49
           ++       +       +   I  NI N +   Y                          
Sbjct: 1   MMRSMYAGVSGLKAHQTKMDVIGNNISNVNTTGYKGSRVTFKEMLNQTMEGASAPQDGRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T   Q     ++     +  +  +     +       E     +    +       L  
Sbjct: 61  GTNPQQIGLGVSLGSIDNNMETGNLQSTGKMTDVALQGEGFFIVNDGTKNLYTRAGNLSF 120

Query: 110 SLESY-------------------------SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
             E Y                         + NL +  L +++  +A    +  +     
Sbjct: 121 DEEGYLTNSSNGNRVQGWTADEDGTIDKTNAANLEDISLDESMDASATTEAKYKDNLNPT 180

Query: 145 VQKIR----ADADKEIELEISNLRRFLSELTVVNDA------------------------ 176
           ++++     +D  +       N+   LSE    N+                         
Sbjct: 181 LEELNLTEGSDVFEIDNGATDNINVSLSEGENENEWNFTLSADDPDTEFVASSGSNTLSG 240

Query: 177 ------------IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                       I   + S       L   D+ + +++   G + I   +        + 
Sbjct: 241 TIQLNSDGTVSDIVDSSGSSFTDSGGLATPDIEVNQVAGTAGSTYIELPDFSSSTPHVNA 300

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           +TLF+            +    + +  ++       +        G     +      V 
Sbjct: 301 STLFDNTNDGGTTADAITNNTRTITTNVYDSQGAEHTVTMDITKVGANDWQIAESSIDVT 360

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPG---LFIADGIKDLDNKLCQGISETICVN 341
                 D     L         I  +++                      Q ++      
Sbjct: 361 DADINDDNGDGDLDWLGGSDHTIQFDADGNIDSGTEATLTFDPATGAADGQEVTLDFSSL 420

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            Q+  + +   D      +       + G   +   Y + +NK      VA  +    L 
Sbjct: 421 TQFDGDMTAGFDTADGYPQGSLESFTIDGSGTITGSYDNGYNKALAKIGVATFSNPAGLS 480

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +           N S    +          I+        V+L  + + +I  ++ +  +
Sbjct: 481 KEGDTLFDT--SNNSGDPQVGQAGIGGRGMIAPGSLEMSNVDLARQFTEMITAQRGFQSN 538

Query: 462 NKLIMFTDKMLQTLLEGVK 480
           +K I  +D+MLQTL+   +
Sbjct: 539 SKAISTSDQMLQTLVNLKR 557


>gi|225375212|ref|ZP_03752433.1| hypothetical protein ROSEINA2194_00837 [Roseburia inulinivorans DSM
           16841]
 gi|225212879|gb|EEG95233.1| hypothetical protein ROSEINA2194_00837 [Roseburia inulinivorans DSM
           16841]
          Length = 594

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/389 (9%), Positives = 103/389 (26%), Gaps = 28/389 (7%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT----------------MTTISP 47
                   +   N+     +   N+ N + K YVR+                      S 
Sbjct: 5   FGSLYIGASGLQNSQNALNTTSNNLANVNTKGYVRQQVLQVDRNYTTFNTTASISQQQSG 64

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             + +           DK     S                      +    +    +   
Sbjct: 65  LGMKIGDVVHARDIFLDKSYRNASGRQAFYAATYEAVDEVYTFYQ-ELQGQAFQTTLEDF 123

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + + ++K   + +    VI  A   V   N     +   ++  + +I  +I  +    
Sbjct: 124 WTAFQEWAKAPDDSVQQNLVIQKANLFVSRSNAVYTGLSDYQSTINTQISDDIDRINELG 183

Query: 168 SELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           + +  +N  I+   +     A    D+RD  L +++  + IS    ++  + V       
Sbjct: 184 NTIFKLNLEIQKVESGNVETAMTLRDERDNALDELASYVDISYKENSDGIVKVSVEGVEF 243

Query: 227 LFETVPRDIN----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           + E    ++                  +     +   +       +       G++KAL+
Sbjct: 244 VDEARCYEMGKNRDEITGFVTPYWTHLSDIENGDYDNVFSFTTPISSDLNNDLGELKALI 303

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
             R      +++ +   +     S ++      +        +   +  +   +   +  
Sbjct: 304 LARGDRKATYKDIVGLTSDEYNRSTADSIATGMSVMLQAQAQLDQLVHGMITAINDTLCP 363

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              +     +  S      + +   + + 
Sbjct: 364 NTTLGELTGNTASLTGTDENGNTVTITSG 392



 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 78/270 (28%)

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            S     +    + T     L      D     M +    +      +  +  ++   + 
Sbjct: 320 TSDEYNRSTADSIATGMSVMLQAQAQLDQLVHGMITAINDTLCPNTTLGELTGNTASLTG 379

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
             +      +     V+           ++       +      ++       A+G    
Sbjct: 380 TDENGNTVTITSGMKVLDTKNCSTGSDKQIPPQELFTRLGTERYTKVSVQETDANGNTVT 439

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           ++            + QY      + D     +  L ++         +     +  K  
Sbjct: 440 NDYYVYNEESETDTSKQYTLASVSVNDKLVEQESLLPHLSQNGKVNYDLAQKVAALWKGE 499

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                      VT ++Y  N +G      S               +    S  +GV+  E
Sbjct: 500 YLTLDPDDTNKVTFIDYYNNMVGAFGTIGSVYESTAKSLSGTVTAVDNQRSQVMGVSSDE 559

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           EL+ +IK + +YN S++ I   ++M+++++
Sbjct: 560 ELTKMIKFQNAYNASSRFINVVNEMIESMI 589


>gi|188997539|ref|YP_001931790.1| protein of unknown function DUF1078 domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932606|gb|ACD67236.1| protein of unknown function DUF1078 domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 413

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/478 (9%), Positives = 109/478 (22%), Gaps = 65/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L  F  A    N   Q    I  NI N +   +                          
Sbjct: 1   MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDL--------VAHSLTTF 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +          G    L +     +  S     N +    ++   +       N     
Sbjct: 53  ANNTPKNTEIGGGSFVALTT-----KDFSQGSFMNTNSPTDLALDGEGFFMVKDNQGTVY 107

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +      N    ++Q    D +  I   +  +    +    +   I     
Sbjct: 108 YTRAGQFRLDANGDLVNVDGMKLQGWTLDNNGNIAGALDKINVPYAINPTITTKINLVEP 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  D               S    IS      N       +  T+++++           
Sbjct: 168 TNLD---------------SRSNVISATFDPTNSTTFNYVNSMTIYDSLGNPHTLSFYFQ 212

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  S +   +       ++  + V    +                              
Sbjct: 213 KTNESSTGSTWKVYAYKDNDLTTQVGSSTL------------------------------ 242

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D     +   P       +   +      +        +  ++            K  
Sbjct: 243 NFDTNGNLTSGSP---FTLSLTLSNGATSPQVISVDVSKIKQVASDFIFYANQDGFAKGD 299

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   KN     VA       L+    N         + +    
Sbjct: 300 LLGVAVTEDGIVKGMYSNGNVKNIARLAVATFKDKEMLVRKGNNLY----LPNTQTFTPI 355

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    + + +   +     V++  E   LI  +++Y  + ++I   D++LQ  +   +
Sbjct: 356 ITPGGILSKVRSGFLELSNVDISREFINLITAQRAYQANARVITTDDQILQEAMNIKR 413


>gi|15642196|ref|NP_231828.1| flagellar hook protein FlgE [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586263|ref|ZP_01676053.1| flagellar hook protein FlgE [Vibrio cholerae 2740-80]
 gi|121726540|ref|ZP_01679789.1| flagellar hook protein FlgE [Vibrio cholerae V52]
 gi|147674037|ref|YP_001217714.1| flagellar hook protein FlgE [Vibrio cholerae O395]
 gi|153213649|ref|ZP_01948922.1| flagellar hook protein FlgE [Vibrio cholerae 1587]
 gi|153817107|ref|ZP_01969774.1| flagellar hook protein FlgE [Vibrio cholerae NCTC 8457]
 gi|153820826|ref|ZP_01973493.1| flagellar hook protein FlgE [Vibrio cholerae B33]
 gi|153825324|ref|ZP_01977991.1| flagellar hook protein FlgE [Vibrio cholerae MZO-2]
 gi|153829329|ref|ZP_01981996.1| flagellar hook protein FlgE [Vibrio cholerae 623-39]
 gi|183179565|ref|ZP_02957776.1| flagellar hook protein FlgE [Vibrio cholerae MZO-3]
 gi|227082321|ref|YP_002810872.1| flagellar hook protein FlgE [Vibrio cholerae M66-2]
 gi|229507726|ref|ZP_04397231.1| flagellar hook protein FlgE [Vibrio cholerae BX 330286]
 gi|229512079|ref|ZP_04401558.1| flagellar hook protein FlgE [Vibrio cholerae B33]
 gi|229513841|ref|ZP_04403303.1| flagellar hook protein FlgE [Vibrio cholerae TMA 21]
 gi|229519215|ref|ZP_04408658.1| flagellar hook protein FlgE [Vibrio cholerae RC9]
 gi|229522146|ref|ZP_04411563.1| flagellar hook protein FlgE [Vibrio cholerae TM 11079-80]
 gi|229528798|ref|ZP_04418188.1| flagellar hook protein FlgE [Vibrio cholerae 12129(1)]
 gi|229607230|ref|YP_002877878.1| flagellar hook protein FlgE [Vibrio cholerae MJ-1236]
 gi|254225801|ref|ZP_04919406.1| flagellar hook protein FlgE [Vibrio cholerae V51]
 gi|254849326|ref|ZP_05238676.1| flagellar hook protein FlgE [Vibrio cholerae MO10]
 gi|255747104|ref|ZP_05421049.1| flagellar hook protein FlgE [Vibrio cholera CIRS 101]
 gi|262161352|ref|ZP_06030462.1| flagellar hook protein FlgE [Vibrio cholerae INDRE 91/1]
 gi|262167777|ref|ZP_06035479.1| flagellar hook protein FlgE [Vibrio cholerae RC27]
 gi|262191689|ref|ZP_06049865.1| flagellar hook protein FlgE [Vibrio cholerae CT 5369-93]
 gi|298500425|ref|ZP_07010230.1| flagellar hook protein FlgE [Vibrio cholerae MAK 757]
 gi|9656753|gb|AAF95342.1| flagellar hook protein FlgE [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549529|gb|EAX59555.1| flagellar hook protein FlgE [Vibrio cholerae 2740-80]
 gi|121630993|gb|EAX63372.1| flagellar hook protein FlgE [Vibrio cholerae V52]
 gi|124115848|gb|EAY34668.1| flagellar hook protein FlgE [Vibrio cholerae 1587]
 gi|125621707|gb|EAZ50036.1| flagellar hook protein FlgE [Vibrio cholerae V51]
 gi|126512375|gb|EAZ74969.1| flagellar hook protein FlgE [Vibrio cholerae NCTC 8457]
 gi|126521618|gb|EAZ78841.1| flagellar hook protein FlgE [Vibrio cholerae B33]
 gi|146315920|gb|ABQ20459.1| flagellar hook protein FlgE [Vibrio cholerae O395]
 gi|148875170|gb|EDL73305.1| flagellar hook protein FlgE [Vibrio cholerae 623-39]
 gi|149741008|gb|EDM55077.1| flagellar hook protein FlgE [Vibrio cholerae MZO-2]
 gi|183012976|gb|EDT88276.1| flagellar hook protein FlgE [Vibrio cholerae MZO-3]
 gi|227010209|gb|ACP06421.1| flagellar hook protein FlgE [Vibrio cholerae M66-2]
 gi|227014093|gb|ACP10303.1| flagellar hook protein FlgE [Vibrio cholerae O395]
 gi|229332572|gb|EEN98058.1| flagellar hook protein FlgE [Vibrio cholerae 12129(1)]
 gi|229341071|gb|EEO06076.1| flagellar hook protein FlgE [Vibrio cholerae TM 11079-80]
 gi|229343904|gb|EEO08879.1| flagellar hook protein FlgE [Vibrio cholerae RC9]
 gi|229349022|gb|EEO13979.1| flagellar hook protein FlgE [Vibrio cholerae TMA 21]
 gi|229352044|gb|EEO16985.1| flagellar hook protein FlgE [Vibrio cholerae B33]
 gi|229355231|gb|EEO20152.1| flagellar hook protein FlgE [Vibrio cholerae BX 330286]
 gi|229369885|gb|ACQ60308.1| flagellar hook protein FlgE [Vibrio cholerae MJ-1236]
 gi|254845031|gb|EET23445.1| flagellar hook protein FlgE [Vibrio cholerae MO10]
 gi|255735506|gb|EET90906.1| flagellar hook protein FlgE [Vibrio cholera CIRS 101]
 gi|262023842|gb|EEY42541.1| flagellar hook protein FlgE [Vibrio cholerae RC27]
 gi|262028663|gb|EEY47317.1| flagellar hook protein FlgE [Vibrio cholerae INDRE 91/1]
 gi|262032428|gb|EEY50990.1| flagellar hook protein FlgE [Vibrio cholerae CT 5369-93]
 gi|297541118|gb|EFH77172.1| flagellar hook protein FlgE [Vibrio cholerae MAK 757]
 gi|327484716|gb|AEA79123.1| Flagellar hook protein FlgE [Vibrio cholerae LMA3894-4]
          Length = 434

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 114/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        S+
Sbjct: 63  VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNSF 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D    +  E   +           
Sbjct: 117 MVTANDEFLLGY--------------------EVNPDTGDVLSYEPKPINIPPQFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A     A+     D  D     +         ++    ++    Y      L +    +
Sbjct: 157 TANIDLGANLPANGDLKDPALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQAN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T E     + G   S              +    D  +    N    + 
Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDAASPTGHVGHT------MRFNNDGTLSSLNNGQPIVT 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  +  D    +                     Q +S ++    Q+ +     +  
Sbjct: 271 EPLGGGANPVDLNGADVN-------------------QTLSFSLDSATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +      ++  F  IS        +++ +EL  LI  ++++  +++ +   + + Q 
Sbjct: 370 FSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|297544701|ref|YP_003677003.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842476|gb|ADH60992.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 413

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/478 (8%), Positives = 110/478 (23%), Gaps = 65/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +   +   +   I  NI N +   Y                       K  
Sbjct: 1   MLRSMYSAVSGLKSHQARMDVIGNNIANVNTVGYKASRMTFKEIFS--------QTIKGA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L  +  ++  + ++           +S   +     S   +   
Sbjct: 53  SAPQGNGGGTNPQQIGLGVAIASIDTLFTSGGAQRTDNPTDLSIDGNGFFIVSNGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                     +         + +  +  D +       + +   +   + +  A   +  
Sbjct: 113 TRAGNFSFDSQGDLVTPDGYKVLGWMSTDGETVNTDTGNLVPISIKNWSSIAPAATTQLE 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +              ++    I   +  N  +            T  R        S
Sbjct: 173 IGGN--------------LNASTEIDGSISYNILVYDSQGGSHIATLTFTRTDASTWNWS 218

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            + +  +         ++      +                                   
Sbjct: 219 VSSSDPAISSVDGSGTLTFGADGKI----------------------------------- 243

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   +    G    +   +  N     +   +     + S         + ++   
Sbjct: 244 ------ATNTTATGTLTFNMNTNETNATIGPVQLDLSQLTMFSSETDLRELSKNGNEAGS 297

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A     + L +       ++    S    + 
Sbjct: 298 LESINIDKYGVVSGIYSNGREQIIGQIAIADFQNPMGLEKVGNTM--FINTVNSGEPMIG 355

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    I+        V+L  E + +I  ++ +  + K+I  +D+MLQ L+   +
Sbjct: 356 AAGTGTRGSINPGTLEMSNVDLANEFADMIVTQRGFQANAKIITASDEMLQDLVNMKR 413


>gi|163793271|ref|ZP_02187246.1| flagellar basal body FlaE domain protein [alpha proteobacterium
           BAL199]
 gi|159181073|gb|EDP65588.1| flagellar basal body FlaE domain protein [alpha proteobacterium
           BAL199]
          Length = 433

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/488 (11%), Positives = 114/488 (23%), Gaps = 63/488 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTV 52
           MS+        +     SQ F  I  NI N +   Y                    +   
Sbjct: 1   MSIYGGMFSGVSALAAQSQAFGIISDNIANVNTIGYKDTTARFQTLVTESSSSSRYSPGG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V  R         +L   +S      +   F  + E                    +  E
Sbjct: 61  VLARPFVNPEKQGLLQGTTSNTDISLVGDGFFIVNENDDPLTSGGEYLLTRAGSFTEDEE 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N +   L     D+   +V +   +  ++  +    +      +SN     +    
Sbjct: 121 GNLVNAAGFFLQGWRTDSTGTIVNS--NTKDQLSSLET-VNLAGFTSVSNPSSTANLAVN 177

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +       +    +   F       L  I+              + V    GTT    V 
Sbjct: 178 LPANATTASTQTTNLTIFDSLGVEHLMTINWTKNAQANEWA-YSLDVTNQAGTTTAAIVA 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             I+F+  +      ++    +DG    +            A                  
Sbjct: 237 GTIDFDPADGTIEDIDNGGTLVDGDTAQTTLPITALAFGSGAA----------------- 279

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                                                +  G         Q   +     
Sbjct: 280 --------------------------------ASSIVINWGTVGQTNGMSQLSGSYEATL 307

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              + S         +     +   + +   +      +  +     L     N   +  
Sbjct: 308 LNQNGSSPSALTAVEIDNEGVVTARFKNGDTRPIYKIAIGTVPAATELRS--ENGNAYKL 365

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +RS    L          I  S      V+L +E + LI  +++Y+ + KLI   D++L
Sbjct: 366 SSRSGDLLLTEAGLQGAGAIESSALEQSTVDLSDEFTDLIITQRAYSAATKLITTGDELL 425

Query: 473 QTLLEGVK 480
             ++   +
Sbjct: 426 DEIIRVKR 433


>gi|237751406|ref|ZP_04581886.1| flagellar hook-associated protein FlgK [Helicobacter bilis ATCC
           43879]
 gi|229372772|gb|EEO23163.1| flagellar hook-associated protein FlgK [Helicobacter bilis ATCC
           43879]
          Length = 606

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 125/378 (33%), Gaps = 34/378 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            +L+  + +    +           NI NA ++ Y R+  +                 V 
Sbjct: 3   GILSSLHTSTTGLHAHQLMVDVTGNNIANASDEFYTRQRVIVHPEAPLYFPDYNLGRGVN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V + +  +           ++                     D       + + +  +S 
Sbjct: 63  VDSIQRLHDEFVFSRYSKAATEHNFFDTEFVTLREASTFF-PDVEGVGIYNDLEEYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  ++N ++    + +  NA  + +N N +  ++  ++    +E+E +I++  +  +++ 
Sbjct: 122 KDIAQNPNDTAQKQVLAKNAMILTRNLNDTKEKLLILQRKKSEEMEAQINDANKLGAQIA 181

Query: 172 VVNDAIKFKTASKH--DAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217
            +N  +K    S     A++  D+RD L  ++ EI+G +                 + D 
Sbjct: 182 EINKKMKEMEDSLTLKQANELRDRRDELEFRLKEILGGNVFKGKLKANNLVGSQAADFDE 241

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV-VSSNQGSAVPKGKIKALL 276
               S G         + +   +N     +  N ++I G      +    + +GK+ AL+
Sbjct: 242 DYNFSVGHGFSFIDGANFHPIVLNKSNNAAGLNRLYIRGYDFKDVDITDRMDEGKVGALI 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + ++         +  + N LD  AR LI S +     +G       +      + L +
Sbjct: 302 DLYNNGYEGTKVGKLQYYMNLLDSFARGLIESTNTIYAQSGTDSIKSDILEIGKNEALRD 361

Query: 329 KLCQGISETICVNPQYRS 346
                      +     +
Sbjct: 362 TNYNIKMGKFTLYAYNAN 379



 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 46/113 (40%)

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           ++G  D+ N           F        ++ L E+ + + G +     +        + 
Sbjct: 494 VSGNFDIANMMQQLQYDEVEFYQNKLDKKHMKLNEFYQYTTGAVANQTQEVKITLDTKKS 553

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V   I + +     V++ EE+  LIK +  Y  + K+I   D+M++TLL   +
Sbjct: 554 VLEAIKKEHLAISQVSVDEEMVNLIKFQGGYAANAKVITTIDRMIETLLGIKQ 606


>gi|330875983|gb|EGH10132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 441

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/479 (10%), Positives = 104/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +         +
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E +  N +
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  +                ++NL    +  T+       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATTAITNVANLNSTTALPTL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSIADPATTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGSSIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDSTGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                       I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGSITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|237799206|ref|ZP_04587667.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806225|ref|ZP_04592929.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022061|gb|EGI02118.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027338|gb|EGI07393.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 442

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/478 (11%), Positives = 103/478 (21%), Gaps = 43/478 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60
            FN   +    A++       NI N     +    T                 +  S   
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVT 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   +  S               +      +                E Y  N S 
Sbjct: 62  TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLFTRAGAFHTDKEGYVVNSSG 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D +  VV    +                                        
Sbjct: 122 MKLQGYNVDASGSVVTGALS------------------------------------DLRV 145

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            +S  +        +      +  +         +     T   T  ++T       ++ 
Sbjct: 146 DSSNLEPKATTTITNSANLNSTTPMPSVATFDATDTKTYNTKYSTPTYDTQGNAHTLDQY 205

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              T T+  +   +      SN  S  P           + V         + A +   +
Sbjct: 206 FVKTGTNTWSMYSLMDGRSISNPASTTPDKNNLTFNSAGNLVTAAPGTVPSDSANIKFNA 265

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G   +             I   +    Q  S    L+        
Sbjct: 266 DGTFAVNNWVPGVQIGTGSSATWAANGATGAASIKLNMSDITQTASVSGLLKQDQDGYAT 325

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  N+    +L   Y +  ++      +        L +       W E   S    
Sbjct: 326 GQLSAMNVDSTGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFSSGVPV 383

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 384 SGAPQSGTLGYITGQALEESNVDLTVELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441


>gi|226939374|ref|YP_002794447.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9]
 gi|226714300|gb|ACO73438.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9]
          Length = 526

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/526 (9%), Positives = 122/526 (23%), Gaps = 55/526 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55
            F    +  N AS+Q  +I  N+ N+    +                     +N   V  
Sbjct: 2   AFQHGLSGINAASKQLDAIGNNVANSSTVGFKGSRAEFADMFAANFYGVAATQNGIGVNT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +    + +        F  ++         N           ++     
Sbjct: 62  TLIAQQFGQGNITTTGNQLDLAISGNGFFVMQNANGISYTRNGQFQIDREGYINNNGDKL 121

Query: 116 K--NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
               + +     +V +     ++  N+                 + + +    +    + 
Sbjct: 122 MGWQVDDRTTPPSVQNGNLGPLKIDNSLLEPRPSDYGGESMRFNINLDSRNNPVEYNALT 181

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE---- 229
             A      +              ++       I+          ++ +DGT + +    
Sbjct: 182 EGASLTGVTTLAPPATADFNASTKVKLPDGRYVITGTSGTTQVGQLFNADGTPINDAAGA 241

Query: 230 ---------TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                     +      ++      T       I  V ++ N           AL     
Sbjct: 242 PTFYDKKLGWLDAAGTVQQYTPNATTPAGAAGTIAAVSIAFNPSDPATYNSKTALTAYDS 301

Query: 281 SVVP--------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI------------- 319
              P           +   ++      +      +   +                     
Sbjct: 302 LGNPIQVAVYFKKTADGQWDVYATAKHTDGSVVDLGTGNTAASPYTALGTGLAFGPDGKL 361

Query: 320 -------ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                  A             +      + Q+ ++ +            + +   +    
Sbjct: 362 TNGGPIAAATYTPAGGGAPLALKFDFSGSTQFGTSFAVNELVQPGYASAVVSNLQIDKTG 421

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            +   Y +   K      +A       L     N   W+E   S +  L+         I
Sbjct: 422 IVSARYSNGQTKVIGQVVLANFANQQGLQPIGNN--RWMETYNSGNPTLNDPGSTNVGLI 479

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    V+L  EL  +I  ++ Y  + + I   D++LQ+L++ 
Sbjct: 480 QSQALEDSNVDLTGELVNMITAQRYYQANAQTIKVHDQVLQSLMQM 525


>gi|114765247|ref|ZP_01444379.1| putative flagellar hook protein [Pelagibaca bermudensis HTCC2601]
 gi|114542382|gb|EAU45410.1| putative flagellar hook protein [Roseovarius sp. HTCC2601]
          Length = 433

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/486 (11%), Positives = 120/486 (24%), Gaps = 59/486 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           MS+        +     S+    I  NI NAD   Y R  +        + S    T V 
Sbjct: 1   MSISNAMASGVSGLMANSKAVEKISYNIANADTVGYRRSFSQMVTSGSTSASGSFSTGVA 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
               + N  +      S           F  +   + A  +   +    +       +  
Sbjct: 61  TEVTHSNTAEGSFMDTSVNSNLTITGSGFFVVNSNIDA-SYTAGNMFTRVGSFEPDEDGN 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N +   L      +   +      S  +++ +            + +    +  +   
Sbjct: 120 LVNAAGLYLMGFGYGDDGTLGAVDRASFNDLEPVNIANQTISGTATTAVSISGNLPSQET 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  A    A  F    +     +S    ++            T  GT         
Sbjct: 180 GLDTPGDAFVTSAEYFNALGESERLTLSFQPSVNDDEWVVTVSDATTEYGTV-------- 231

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                                         S    G+          V            
Sbjct: 232 ----------------------------TMSFNDTGENAGAPAAYGDVTVTAAAPAGFAF 263

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
               G  +                     +     +  G   +     Q+  + + +   
Sbjct: 264 DPATGEMTLTIDNGT--------------EPQVVTMALGAPGSFEGLTQFSGDYTPMTVR 309

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            + S+           + D+   + +   K     P+A       L     N+  +   N
Sbjct: 310 PNGSESGTLTRVEFDEFGDVWGVFDNGTRKALYSIPLATFANPNGLET--SNNSTFHTSN 367

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S S+ L          ++     +  V++ EEL+ LI+ +++Y+ + K+I   D+ML  
Sbjct: 368 TSGSYYLGQPGTGETGTMTSGGVESANVDIAEELTSLIQRQRAYSSNAKIITTADEMLNE 427

Query: 475 LLEGVK 480
            +   +
Sbjct: 428 TVNLKR 433


>gi|28869140|ref|NP_791759.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213967582|ref|ZP_03395730.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1]
 gi|301385713|ref|ZP_07234131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13]
 gi|302060075|ref|ZP_07251616.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40]
 gi|28852380|gb|AAO55454.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927883|gb|EEB61430.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1]
 gi|331017026|gb|EGH97082.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 441

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/479 (10%), Positives = 105/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +         +
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E +  N  
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  +                ++NL    +  T+       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATSAITNVANLNSTTALPTL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTAADKNDLTFDSSGNLVVAAPGTVPSDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +       +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGVPESGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|319787121|ref|YP_004146596.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465633|gb|ADV27365.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 406

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/476 (8%), Positives = 109/476 (22%), Gaps = 75/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSENKNM 62
            FN + +  N A+        NI N++   +            + +             +
Sbjct: 2   SFNASLSGINAANADLNVTSNNIANSNTVGFKSSRAEFADLFSSTSYGLASNAVGSGVKV 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +         I        F    E +       ++        +     +        
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDFAIDGEGLFTVSKNGDTFYTRAGNFQPDNRGFVVTPDGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                   ++                ++  T+
Sbjct: 122 L-----------------------------------QVYAPNANGGFDVGRTTDLQLATS 146

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                   L +  V L   +    +     + ++    +S G T+++++           
Sbjct: 147 DSPPRQTGLVELMVTLPGAAAEPTVQPFDPSESNSYNASSGGVTVYDSLGVAHVQTSYFV 206

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +    ++         + + +      +L+   D  +                   
Sbjct: 207 KTENANEWQVYNYVDGNQVGEPTTLQFDSNGSLVSPADGRIA------------------ 248

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                             D            +   I  + QY ++ +             
Sbjct: 249 -----------------MDPYTPGTGAGQLELGLDISGSTQYGNSFALRSINQDGFASGK 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++A    +   Y +  +       +        L     N   W   + S +    
Sbjct: 292 LTTIDVAEDGVVYARYSNGDDVALGQIVLTNFVNPQGLQAVGNNM--WAATHSSGTPRSG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  I         V+L E+L  +I  ++++  + ++I   D+  QT++  
Sbjct: 350 APDSSDFGRIQAGALEASTVDLTEQLVNMITAQRNFQANAQMISTQDQATQTVINI 405


>gi|308050366|ref|YP_003913932.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM
           9799]
 gi|307632556|gb|ADN76858.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM
           9799]
          Length = 636

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/441 (10%), Positives = 138/441 (31%), Gaps = 25/441 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + + A++    A +Q      NI N   + Y R+      S               V
Sbjct: 1   MADLMSIARSGVLAAQKQMGVTSNNIANVGTEGYNRQVAEQRTSESTHIAGHFLGTGTYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              +    +   + L    S   Q        +  + + +      +  + ++ L +++ 
Sbjct: 61  SDVKRIYNDYAQRELSLSISQHSQAETRFGKMSELDQLFSIV--GKAVPNSLNTLFENVN 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +     S+  + + ++ +A ++   FN+  +E++      +++++  +  +    +EL  
Sbjct: 119 NLVDMPSDLGVRENLLTSAGQLTAAFNSLGQELEGQVRQVNQQLDGVVDRVNAITAELAD 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  ++            LDQ+D L+ +++E + ++ I ++     V       L     
Sbjct: 179 INLQLQKV---NGQDLQLLDQQDRLINELAEYVQVNVIPQDMGVKSVMAGGSIMLVAGET 235

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         +    +       +   G++   G+++AL+  R+  +     +L  
Sbjct: 236 PMQLGLTSG--DPITHETRLTGTSGDQTVVLGTSAVGGEMQALMDYRNQDLAGAIQKLGV 293

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA  +  +F++      + +   G  +   I   +  + +          Q         
Sbjct: 294 MALGVADAFNQSQAAGFDLDGNVGQNLFSDINSPNMTIGRVAVYAGNTGTQALG---VEI 350

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           D  S      +++        + + Y  +   +   +    + +         +      
Sbjct: 351 DDTSALTGGRYDLSFDGTDYQITDQYGTTTTLSADPNDATRLISPDGF-----SLRVGAG 405

Query: 413 KNRSDSHDLHMKSQVVFNHIS 433
              +        S      I 
Sbjct: 406 TPAAGDKWTLTPSAGAAASIE 426



 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 94/364 (25%), Gaps = 8/364 (2%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N       + +   A  V   FN S      +  +  + +  +I++    +  + V    
Sbjct: 281 NQDLAGAIQKLGVMALGVADAFNQSQAAGFDLDGNVGQNLFSDINSPNMTIGRVAVYAGN 340

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                A   +  D             +        +      +            P   +
Sbjct: 341 -TGTQALGVEIDDTSALTGGRYDLSFDGTDYQITDQYGTTTTLSADPNDATRLISPDGFS 399

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                      +   +       +S +        + A     ++V    +  L  + R 
Sbjct: 400 LRVGAGTPAAGDKWTLTPSAGAAASIEVVMDNPRGLAAAGYGLETVTGNGEATLLAVDRT 459

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                   + +  + +          I D         + T         + +   D  +
Sbjct: 460 NPNLPGNGEVMTIDVDYSTTPSPTYSISDSQGNALATGAFTGNQIDALGFSLALNPDTAT 519

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
             +  L                 ++ N   +         N T+ +        +     
Sbjct: 520 GDQFSLDISFGPGDN-------RNAVNMAGLATAKIMGGGNATMTDVYEGITTSVGGQTR 572

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +      ++ V    +E  +   GVNL EE + L++ +Q+Y  S +++    +   TL 
Sbjct: 573 AAEVALDSAETVKMQATERVAAESGVNLDEEAANLMRFQQAYQASARIMTVAKETFDTLF 632

Query: 477 EGVK 480
             V+
Sbjct: 633 AAVR 636


>gi|220934394|ref|YP_002513293.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995704|gb|ACL72306.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 408

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/475 (10%), Positives = 110/475 (23%), Gaps = 73/475 (15%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRSENKNMF 63
           F  A +  N AS        NI N+    + +                  T       + 
Sbjct: 3   FRTALSGLNAASADLRVTGNNIANSGTTGFKQSRAEFADVFALSYGGISQTAIGTGVRLS 62

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
                     I             +     +             + + E Y  N     L
Sbjct: 63  AVTQQFSQGNIEFTGNNLDLAMNGQGFFVLNDSGTQVYSRAGAFQVNREGYVVNTQGQRL 122

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                 NAE    N       +  ++    +      +++   L+  +VV          
Sbjct: 123 QVYTPQNAEGTQFN----TGSLADLQLSLSEAPPSATTDVNVRLNLSSVVEPI------- 171

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
             D     D  D      S  + +   +   +   +Y  +           + ++   + 
Sbjct: 172 --DPAIAFDVADPSSFHYSTSLTVYDTLGQAHTASLYFRNTD--------TLQWDSYLAI 221

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                  P+ ++     +   +            + +                       
Sbjct: 222 DGNLAGGPLPLEFNSDGTLNTATTTTPLNFGTYALTN----------------------- 258

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                                         I   +    QY    +      +       
Sbjct: 259 ------------------------GADDLNIDFDLANATQYGGAFNVTSLSQNGFTTGRL 294

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           N  ++     +   + +  ++      +A       L +   N   W E   +    L  
Sbjct: 295 NSIDIDPTGVVFARFTNGQSQALGRVALANFANPQGLQQLGDN--AWGESFAAGDVILGE 352

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                F  I      +  V++ E+L  LI  ++++  + ++I   D + QT++  
Sbjct: 353 ADTGNFGLIQAGGLESSNVDIAEQLVKLITAQRNFQANAQVITTADAVTQTIINI 407


>gi|300938647|ref|ZP_07153376.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1]
 gi|300456432|gb|EFK19925.1| flagellar hook-associated protein FlgK [Escherichia coli MS 21-1]
          Length = 547

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/553 (9%), Positives = 127/553 (22%), Gaps = 84/553 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAH----------------------SSAIGQQRLLQSFEALKEMM 90
              + E        L A                       +S       +Q F    + +
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---------------- 134
            ++     +    I K    +  +             ++ A                   
Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180

Query: 135 -----------VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                        + N    +  ++ ++ ++ + +E+S        +T+ N     + ++
Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240

Query: 184 KHDAHDFLDQRDVLLQKISEIIGIS------------------TIVRNNNDMVVYTSDGT 225
                      D     ++ I G +                     R+ +      + G 
Sbjct: 241 ARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                        K             F  G               I A +    +V+  
Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVSIGATVTDASAVLAT 360

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                 +  +  +   +         +    +                 S T+       
Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   L    +            +          +      +      +    +  +   
Sbjct: 421 VNMDVLITDEAKIAMASAEDAGDSDN-------RNGQALLDLQSNSKTVGGAKSFNDAYA 473

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    +           V   +S    +  GVNL EE   L + +Q Y  + +++
Sbjct: 474 SLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 533

Query: 466 MFTDKMLQTLLEG 478
              + +   L+  
Sbjct: 534 QTANAIFDALINI 546


>gi|226327746|ref|ZP_03803264.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198]
 gi|225203450|gb|EEG85804.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198]
          Length = 406

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 119/476 (25%), Gaps = 75/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+    +I  NI N+    +                         ++N 
Sbjct: 2   SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGASVSFADVFAGSGAGLGVKVAGISQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +   +           F  +++                 +       +  N+    
Sbjct: 62  KDGSITTTNRPTDVAISGGGFFRIEDQ------NGGVFYSRNGEFGKDKNGFLTNMQGMR 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +    +           +   +    +      I +    +    ++   +   +     
Sbjct: 116 VTGYPVQ----------SVDGKNVVQKGATPTPIVIPTDMMNASATDKVDMTVNLNSAEE 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                    + +D                          S   T ++++  + N      
Sbjct: 166 PIDQTTHAFNPKDN--------------------DSYNFSTNVTTYDSLGNEHNLNLFFV 205

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +E      D       Q        +  L+   + V+      +     V      
Sbjct: 206 KTKDNEWEVHAQDSTTGEPAQN-------LGKLVYKNNGVLDETATSIKNFTTVSYKGSE 258

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D                                     Q  +  S  +   +  +   
Sbjct: 259 TMD---------------------------MAMNFTGSTQQKVAESSVSKLAQNGYQAGE 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +  ++      +A       L     N   W E N S S  + 
Sbjct: 292 FTNFRIEQDGSIMATYSNQQSQVVGQIALANFANAGGLSSQGDNM--WSETNGSGSPIVG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +    VF  ++ +      V++ +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 350 VAGSGVFGKLTNNALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLVSL 405


>gi|292670031|ref|ZP_06603457.1| flagellar hook-associated protein [Selenomonas noxia ATCC 43541]
 gi|292648332|gb|EFF66304.1| flagellar hook-associated protein [Selenomonas noxia ATCC 43541]
          Length = 564

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 128/385 (33%), Gaps = 18/385 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------------VTVVTQR 56
                N      ++  NI NA  + Y R+   +  +                 V VV   
Sbjct: 2   VRGIQNNQLSLDTVGHNITNASTEGYSRQRVDSAATNYQERPSLYGNVYVGGGVDVVALN 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                  DK   + +S+    +  ++     E +  +D       + + +   +  + S 
Sbjct: 62  RARNVYADKQYWSETSSQNLYKTYKTNYDKVESIF-NDAKKTGILNAMQQFYSAWVNLSD 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S+      V+     +V    T A+++Q        E+ +++  +     E+  +N  
Sbjct: 121 YASDAASRTAVLTKGNNLVDRIKTGAKQLQDQITAQYDEMRIQVGKVNGITEEIARLNKN 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I     +   A+D  DQRD+L+ K+SEI  ++     N    V  S+G TL +   R + 
Sbjct: 181 IMLAETNGAKANDLRDQRDLLVDKLSEITNVNVYEEANGQYTV-VSNGMTLVQRDNR-LT 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            E              +   +  +   G     G +KAL          + + + ++A  
Sbjct: 239 LEMSEPINNDRYGITDYTIRIKEAGGLGYVPQGGILKALQDTIVQD-KGYIDNVADIAAT 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L+ +F++   +    +N    ++    ++  +    G + T      +    +  R   +
Sbjct: 298 LLTTFNDVHKLGAGIDNNATSWMNFFGRNSFHSNATGSNYTGERYTWHVDPTTGDRWMTA 357

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDS 381
             ++              ++    +
Sbjct: 358 TGQQVTRTTAAGTTTVTTVDTSNAA 382


>gi|307945688|ref|ZP_07661024.1| flagellar basal body FlaE domain protein [Roseibium sp. TrichSKD4]
 gi|307771561|gb|EFO30786.1| flagellar basal body FlaE domain protein [Roseibium sp. TrichSKD4]
          Length = 459

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 122/483 (25%), Gaps = 27/483 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSE 58
           M +    N A +     S+   +I  N+ N+    Y R DT      S       TQ S 
Sbjct: 1   MGIYGAINSAVSGLTAQSRALENISGNVANSQTTGYKRLDTTFADLVSGGGSRQATQVSG 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 +  +     I  + +        E        N       S       + + + 
Sbjct: 61  TTYATSRATNTLQGDIAARDVGTYMAINGEGYFIVTEANAVVDGTTSFEETDYYTRAGDF 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             D  G  V  +   +                    +I  +     +  +     N    
Sbjct: 121 ERDQNGYLVNSSGYYLQGFELNPDTGNPVGDTPEVVQISDQPLPANKTTAINYQANLPPT 180

Query: 179 FKTASKHDAHDFLDQRDVLLQ-KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
            +T       D  +   + +   I+    I+    +       +    T++      IN 
Sbjct: 181 PETNRAKSNPDLANSDQLNITGSITATSDITNDDNDAFVDSSISGGSITIYNQNGTAINV 240

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E   + T     N  +      +    +    G+         + +              
Sbjct: 241 ETRWAKTADDTWNVYYASDRGTAGTDAAYTRLGQAAFNADGSLNAITA------------ 288

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                                 +  + D+          +  +     ++ +      + 
Sbjct: 289 --------GTGVAVNGNTFEIASLQVGDVSAANVNLNFGSNSLTQFAANSGAASSVDLAQ 340

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +  +A       +   S ++      +              +   +   + S 
Sbjct: 341 DGYPAGELVGIAVDSSGRVNASYSNSQTRALYEIPLATFEAEFELRRVDGAAFAATSTSG 400

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  L   +     +I          ++  E S LI  +Q+Y+ +++++   D+ML + L 
Sbjct: 401 APVLISSN----GNIVPEAVELSNADIATEFSKLIVTQQAYSANSRIVTSADEMLDSALN 456

Query: 478 GVK 480
            V+
Sbjct: 457 MVR 459


>gi|99082779|ref|YP_614933.1| hypothetical protein TM1040_2939 [Ruegeria sp. TM1040]
 gi|99039059|gb|ABF65671.1| Flagellar hook protein flgE [Ruegeria sp. TM1040]
          Length = 422

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/480 (10%), Positives = 123/480 (25%), Gaps = 58/480 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M++ +  N         S + A+I  NI N+    Y R  T       + +     +   
Sbjct: 1   MTISSSLNAGVAGLAANSTRLAAISDNIANSSTAGYKRVVTSFESMVISQSGGRYAAGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           ++ +  +    S++                                +  +     +   E
Sbjct: 61  SVNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVKAGEDPNMLLTTSGSFRTNDE 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L  +          N + +   V +   D  + I  + + L    +    +   +   
Sbjct: 121 GYLTTSSGLVLLGWPANSDGTLPSVARDTDDPLEPIRFDTAQLSAAPTTAVSLGVNLPAS 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           +A    A    +        +                                       
Sbjct: 181 SAVTGAAGAAEENTIQYFDNL--------------------------------------- 201

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                  + N ++       +     +  G    ++                ++ V   +
Sbjct: 202 ---GGQQDLNIVYTPTGAADNEWTMTLTDGVTGTVVGDYTLTFDDSVTGKGTLSTVTTTT 258

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               DP  G                +       I   I V  Q  S+ S         + 
Sbjct: 259 GGAYDPATGAI--------------IVTTDSGPIEIEIGVMTQLASSFSAATIEKDGYEA 304

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
             +    +     +   Y +  ++     P+A +     +     +S  ++    S ++ 
Sbjct: 305 ASFAGVEVDEGGYVHALYENGSSRIVYQIPLADMPNANGMRSL--DSQTFMPSPDSGAYY 362

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L          ++       G ++  EL+ +I+ +++Y+ + K+I   D+MLQ      +
Sbjct: 363 LWDAGAGPTGTVASYRQEESGTDVASELTTMIQTQRAYSSNAKVIQTVDEMLQETTNIKR 422


>gi|253990127|ref|YP_003041483.1| flagellar hook protein FlgE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781577|emb|CAQ84740.1| flagellar hook protein flge [Photorhabdus asymbiotica]
          Length = 404

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 115/473 (24%), Gaps = 71/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI NA    +               V             
Sbjct: 2   AFSQAVSGLNAAAANLDVIGNNIANAATYGFKSSSAAFADIFAGSQVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +          + T  ++  +        +       +
Sbjct: 50  -------------LGVKMSGINQNFKDGTPTTTNRTLDMAITQGGFFRMQSSDGTIRYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E                             +     +LT          A + 
Sbjct: 97  NGEFKLDENRNI-------------------------INMQGMKLTGYPAVSVNGGAPEI 131

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 +   +    +S        +  N + +   + G    E          + ++  
Sbjct: 132 QKGANPEPITISQDMLSAKATTKVTMTANLNSMHKKTTGAFSPEEADSYNYTTSVTTFDS 191

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               + + +  V  + N+                       Q+   E A+       + D
Sbjct: 192 LGNPHNVRVFFVKTNDNEWQVH------------------AQDSTVEGAKAASLGTLKFD 233

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  +           +  N     I        +  ++ S L           +N 
Sbjct: 234 GNGKLIGDNNQFTFNVPSLNGSNAADITIDFNGSKQQKIDAD-SILAPKQDGYAAGKFNG 292

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +I  Y +  ++      +        L     N   W+E   S S  + +  
Sbjct: 293 YRIEKDGRVIGTYSNLQSQVLGQIVLTNFANPEGLAAQGDNV--WVETGASGSSIIGIAG 350

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V++ +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 351 SGGFGELLSSTLEASNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVSM 403


>gi|319406994|emb|CBI80631.1| Flagellar hook protein FlgE [Bartonella sp. 1-1C]
          Length = 402

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/480 (8%), Positives = 113/480 (23%), Gaps = 78/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +  +     +  N    + + +  N+ NA    Y R D   +                
Sbjct: 1   MGIYGMMRTGVSGMNAQGTRLSGVADNVANAGTIGYKRTDVQFS---------------- 44

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     S                ++           +       +     +    +
Sbjct: 45  -----NYVTPSGKYAYVPGGVKSHIGHDVSIGGPARATGRSGDTMIHGNGFFRVADENGK 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      ++     NT+   +                           +N+  +  
Sbjct: 100 EFLTRAGSFIRDKDGYLRNTAGYYL---------------------------LNEDGEKI 132

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                         D+   + +  I                     + E     IN E  
Sbjct: 133 QIKGGPT-------DLFGPEATTKIDFKANFNP----------SAKVVEPKDGTINPENP 175

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +Y+           G  V  +            +    D           +    LI  
Sbjct: 176 ETYSQKKSMTTYDSQGKKVQVDFYMRKTDENKWVVDAYSDGKKVGSTEFNFDKEGNLIEP 235

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
             E      +SE        +      + L              + N           + 
Sbjct: 236 TKEFKLTLPDSEGNTFEVNVNFGGVGADSLV-----------TQKGNLFAFEGEADGMES 284

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
             ++        ++   Y +   +   +  V  + +  +L  +   ++            
Sbjct: 285 GAFDGFTFGKNGEIEVMYSNQKTRTIGYIGVTTVASTDSLT-FLGGTVFETNSQT-GPQM 342

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +      VF  +S  Y     V++ +EL+ +I+ +++Y  ++K+     +++  ++   +
Sbjct: 343 MGRPGDGVFGTLSSGYLEDSNVDMGDELTDMIEAQRNYTANSKVFQTGSELMDVIVNLKR 402


>gi|317154735|ref|YP_004122783.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944986|gb|ADU64037.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 554

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/561 (9%), Positives = 119/561 (21%), Gaps = 88/561 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M L +            S++   I  N+ N +   +                      + 
Sbjct: 1   MGLGSSLYAGITGLTVHSERMTVIGNNLANVNTVGFKGTWMQFEDLLSQDFATVNGVGQI 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   +   +       + + A                + +    ++         R 
Sbjct: 61  GRGVRVSTIYSDFGQGSFESSTEATDVAISGDGMF-----VLSPKGLDSKFYSRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA----------REVQKIRADADKEIELE 159
             + Y  +    ++    ++ A   V + + +                IR D  +     
Sbjct: 116 DNDGYLVDPHGYVVQGWAVEQATTSVSSTSATTTSTVNSTRIVGTPTDIRLDNFQSSPKA 175

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNN 214
            S++    +      D     T       +  D       D      S  + +   +   
Sbjct: 176 TSSMSVVTNLDPTATDKSTSATHPYFAMFENWDGTEDTPLDATRYSYSTTMKVFDDIGTA 235

Query: 215 NDMVVYT-------SDGTTLFETVPR---------------------------------- 233
           +++ VY        + G T++E +                                    
Sbjct: 236 HNVTVYFDPVTLSNAGGDTVWEYMVTVNPSEDRRMLSGADGNITSIGKGLTEASGVLMVG 295

Query: 234 -----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                      M+++T+ S          + +         G                  
Sbjct: 296 TLTFTTGQLTAMSAFTLKSNGGMTGGPDDLRNWTPADFSTGGYPVFTANFLGKSNASTAE 355

Query: 289 QLDEMARVLIGSFSEKDPIAGNS---------ENVPGLFIADGIKDLDNKLCQGISETIC 339
             +     +    S  D                                         + 
Sbjct: 356 AANATPIQMDFGISNNDLSGNGWTVSLGTMPSNAAAAQLAITNSTGYLPSFRDPAVSALA 415

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                    S L  G       +    +++    L  HY +          +A       
Sbjct: 416 TQSYNTGGSSTLFQGQDGYSAGILQNISVSREGVLTGHYSNGEVIELYALTLATFTNKHG 475

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N     E   S               +  +      V++  E   +I  ++ + 
Sbjct: 476 LRREGGNLFS--ETRESGPALTGQAGSSGKGTVDGNALELSNVDMATEFVRMITTQRGFQ 533

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            + K+I  TD ML  ++   +
Sbjct: 534 ANTKVITTTDSMLGEVIAMKR 554


>gi|258621049|ref|ZP_05716083.1| flagellar hook protein [Vibrio mimicus VM573]
 gi|258625277|ref|ZP_05720185.1| flagellar hook protein [Vibrio mimicus VM603]
 gi|262170825|ref|ZP_06038503.1| flagellar hook protein FlgE [Vibrio mimicus MB-451]
 gi|258582450|gb|EEW07291.1| flagellar hook protein [Vibrio mimicus VM603]
 gi|258586437|gb|EEW11152.1| flagellar hook protein [Vibrio mimicus VM573]
 gi|261891901|gb|EEY37887.1| flagellar hook protein FlgE [Vibrio mimicus MB-451]
          Length = 434

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 114/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YISLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        SY
Sbjct: 63  VAQ---QFHEGSSIYTNNPLDLRIAGTGFFAVAKDKIVPQQNE---LTRNGAFHLDKNSY 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D+   +  E   +           
Sbjct: 117 MVTANDEFLLGY--------------------EVNPDSGDVLSYEPKPINIPPQFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A     A+     +  D     +         ++    ++    Y      L +    +
Sbjct: 157 TANIDLGANLPANGELKDPTLFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQPN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      T E     + G   S              +    D  +    N    + 
Sbjct: 217 TWQTYYTVTDKTGEKPINVVGGDATSPGGHVGHT------MRFNNDGTLASLNNGQPIVT 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  +  D    +                     Q +S ++    Q+ +     +  
Sbjct: 271 EPLGGGTNPVDLNGADV-------------------SQTLSFSLDSATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 QDGATTGFLTKIDFDENGSVLATYSNGQNTTLGRVALVRVANEQGLDK--KGGTQWDATQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        ++  F  IS        +++ +EL  LI  ++++  +++ +   + + Q 
Sbjct: 370 FSGDKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|163735543|ref|ZP_02142975.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och
           149]
 gi|161391163|gb|EDQ15500.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och
           149]
          Length = 416

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/469 (11%), Positives = 118/469 (25%), Gaps = 62/469 (13%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENKNMFDKV--LHAHSSA 73
            ASI  NI N+    Y R  T            +      R+  + + D+   L + S++
Sbjct: 1   MASISDNIANSSTFGYKRVQTDFESMVLSSGGGSYAAGGVRANTQRLIDERGTLVSTSNS 60

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
                       + +         ++          R   E Y  + S  +L        
Sbjct: 61  TDLAVRGGGMLPVAQSAQVQTAGADAPMFLTTTGSFRTDAEGYLTSQSGLVLMGWPAAAD 120

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
             +      +A  ++ +R    +             S    +N       A      + +
Sbjct: 121 GSIPVYPRDTADGLEPVRIATGQLAG------NPTTSMSLGINLPATETEADSAGLTEQI 174

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
                     S+ + I+            T                E  +S         
Sbjct: 175 SVEYFDNLGTSQSVSITFTPDVPAPGNPAT-----------NTWTMEMFDSVNPAVSIGS 223

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
             ++     +  GS      I A     D+                              
Sbjct: 224 YTLEFNDSRTGGGSLFDVTPIGASPAYSDTT----------------------------- 254

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                  I   +     ++  G         Q   + + +      S    +   ++   
Sbjct: 255 -----GLITINVAAGPIEVDIGALGDTEGLSQLSYSFAPISVTKDGSAIGNFVGVDVDPN 309

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +   +     +     P+  +     L  +  +S  +L   +S +  L          
Sbjct: 310 GFVRASFDTGEIRTIYQIPLINVPNPNGLQAF--DSQTYLPSRQSGAFFLWNAGDGPTGD 367

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I          ++  EL+ +IK +++Y+ + K+I   D+MLQ      +
Sbjct: 368 IVSFAREESTTDVAGELTDMIKTQRAYSSNAKVIQTVDEMLQETTNIKR 416


>gi|148258440|ref|YP_001243025.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1]
 gi|146410613|gb|ABQ39119.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/487 (10%), Positives = 118/487 (24%), Gaps = 28/487 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53
           MS+      A +     S   A+I  NI N     Y   DT  +    +          V
Sbjct: 1   MSISTALLTAFSGMKAQSYAMANISGNIANTQTPGYKYVDTSFSDLISSQTRKQAVAGSV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              +   N     L A  ++        +F ++++                       + 
Sbjct: 61  VAEARFTNSVQGALRATGTSTNMAINGPAFFSVQQKTGDSKFSGVPLYTRRGDFTIDKDG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y  N ++  L  T +D A     +          +       I+   +  +  ++     
Sbjct: 121 YLMNGADLYLFGTNLDPATGSAVSSGPIRINNSNMPGRQTTRIDYGANLPKAPVTTAGSA 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            D+  +  A+       L   D   +  +               +     G T       
Sbjct: 181 GDSTPYAVATAIVTDPTLATPDTSKKVPAAQAQSFLDKSLPGPSLTMYGAGGT--PVSVS 238

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
               +  ++    +       +    SS+ GS              D             
Sbjct: 239 TRWAKVQDANAAATPPKNATWNLFYASSSTGSKASDWTNVGHAFAFDG------------ 286

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   +        S  +    +     +  +      S  +          +    
Sbjct: 287 -AGKFVPPAAAVVAGDGSVALKIPQLTVDGVNSGDVTLSIGSGGLTQLATSSGAVTTNTL 345

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                        ++     ++  + +          VA       L   +     + + 
Sbjct: 346 AQDGYPAGSLKSLSVTSEGTIVGTFTNDMTAAVAVAGVANFANPNALKPASGG--SYEQT 403

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S      +    +              ++  E S LI  +Q+Y+ + K++  + +M+ 
Sbjct: 404 RDSGPPIAGLNGATIVG----GNVEASNSDVAGEFSKLIATQQAYSANVKVMTTSQQMMS 459

Query: 474 TLLEGVK 480
            LL  ++
Sbjct: 460 DLLNAIR 466


>gi|283477483|emb|CAY73399.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae DSM
           12163]
          Length = 427

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/425 (14%), Positives = 122/425 (28%), Gaps = 61/425 (14%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           K+ S     ++       +   FN+S+  +  +    + +I+  + ++     +L  +N+
Sbjct: 3   KDPSAPAARQSAYSTLGSLTYQFNSSSERLTGLEKSTNTQIKQSVDDINSCTQQLAKLNE 62

Query: 176 AI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVPR 233
            I K  +       D LD RD LL+ +S   GI          M V  +DG  L      
Sbjct: 63  NIEKIVSQHGTPPADLLDARDGLLEDLSMQTGIKVNEDKLTGRMDVTLADGRPLVSGTRV 122

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                + ++                 +      +  G +  L   R+  +   +N+L++M
Sbjct: 123 YQLKAEASAENPNKTVVSYIDASGNATRLDEERMTGGALGGLFTFRNEDLSKARNELNQM 182

Query: 294 -------------------------------ARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                                             L    +  D         P   +   
Sbjct: 183 ALKMAGRFNEVNGQGYDQNGNPGGDLFNVPTPEALANRNNGGDASIDARLTAPYTDVKAE 242

Query: 323 IKDLDNKLCQGISETICVN-----------------------PQYRSNPSFLRDGGSVSK 359
              +         +                                 +   L     V++
Sbjct: 243 DYTITFTNGDWEVKGADGRVVPHTVNAAGELEFDGVSLGVSGTAEEGDSFMLNPAAGVAE 302

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-----TNVTLLEYARNSIGWLEKN 414
                V N        +   +  + N     + GI         TL E   + +  L  +
Sbjct: 303 NVSVAVDNGEAIAASDSSDPEEVSNNKNLAKLLGIQDEKLIGKATLTESYASLVSGLGSS 362

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S     +  +  V N ++  + + VGVNL++E   L   E+ Y  + +++     ML T
Sbjct: 363 TSALKADYATAGSVLNELTTKWQSVVGVNLEDEYVTLSMFEKYYQANAQVLQTATTMLDT 422

Query: 475 LLEGV 479
           LL   
Sbjct: 423 LLAIK 427


>gi|89902477|ref|YP_524948.1| hypothetical protein Rfer_3717 [Rhodoferax ferrireducens T118]
 gi|89347214|gb|ABD71417.1| protein of unknown function DUF1078-like [Rhodoferax ferrireducens
           T118]
          Length = 404

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/473 (8%), Positives = 105/473 (22%), Gaps = 71/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F    +  N +S+    I  NI NA+                                 
Sbjct: 2   SFQTGLSGLNASSRSLDVIGNNIANANTTGMKSSRAEFGDLVA----------------- 44

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +       +  +  ++ +  S  +         ++         +         +
Sbjct: 45  -SSLGAGGSSGAGIGVAVGSISQQFSQGNINITGNDLDVAINGGGFFQLALPDGSAAYTR 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +        S   V     D   +       + +               +A   
Sbjct: 104 DGSFKLDANGYIKTNSGANVLGYPTDKTGKTTSVKPEILQL------------PTSAPIA 151

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            +       ++ L   + I    T     +      +   +   T+P ++ F K+   T 
Sbjct: 152 ASATTAISAELNLDARAPIATSVTPPTPRSTYGTSLTAYDSQGVTMPVNLYFSKVTPTTA 211

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            ++   ++      S         G +++                               
Sbjct: 212 GTDQWAVYDSPTGASVGSLVFDASGALQS------------------------------- 240

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                        +              ++  +    Q+ +  +                
Sbjct: 241 --------STMGSLTLTPAPPSIVPAFPVTVDVSKVTQFGAAFAVSNLTQDGYAPGELTG 292

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +   +      +A       L     N   W+    S    L    
Sbjct: 293 LKIGENGQITARYSNGQTQIAGQLSLADFRNVQGLSPIGGN--SWVASYTSGDPVLGSPG 350

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +         V+L  EL  ++  +++Y  + + I   D+++ TL+  
Sbjct: 351 VGKFGALRSGALEESNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVNL 403


>gi|330445355|ref|ZP_08309007.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489546|dbj|GAA03504.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 777

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 130/408 (31%), Gaps = 20/408 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +     +    + +Q      NI N     Y R+      +               + 
Sbjct: 3   SDLMQLGISGLRTSQKQLDVTSHNISNVHTPGYSRQVVDQKAADAQWSGGNYYGSGAYID 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +          + L   ++ + +  +      + +  ++    N    + ++   +S+ S
Sbjct: 63  SVNRAYDQFAARELTLSTTQLEESNVRHQHMMMLDDFTSKSAVNTV--NSMNDFYNSVRS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S + ++    +TV+++A +   +FN S   +  IR D ++++++ +  +     EL  +
Sbjct: 121 LSDHPNDLGSRQTVLESANQAANSFNNSYETLTNIRRDVNEQLDVTLERVNALGQELAAI 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFETVP 232
           N +++         HD LD++  L+ ++++   ++ +    +    V    G TL   V 
Sbjct: 181 NTSLQEL-PDGDKNHDLLDKQRGLINELAKYTKVTVLADKGSLADKVIIGSGDTLVSGVE 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                       +  +   I       +         G + ++L IRD V+    +++  
Sbjct: 240 FSQLKMVSGDPDLEDKQIAIVNGNQAKAIKSD--HIGGGLGSMLSIRDDVIDKSLDEMGR 297

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           MA       ++      +     G  +        N         +            + 
Sbjct: 298 MAIGFSKQINDLQQSGTDLTGAMGSALF----TDVNSPTLLKERVLKPLGSQTDIDVKID 353

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           D  ++         +  G       +  + N+    D  A I    TL
Sbjct: 354 DVNALKAGDYKLTTSFDGTDYSFRLFDPAGNEMKQADGSAYIAATDTL 401



 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/446 (10%), Positives = 120/446 (26%), Gaps = 22/446 (4%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                 +  +  +   +        +S  G     + F+     M   D           
Sbjct: 342 LGSQTDIDVKIDDVNALKAGDYKLTTSFDGTDYSFRLFDPAGNEMKQADGSAYIAATDTL 401

Query: 106 KLRDSLESYS-----KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
            L  +++  +        +    G++     + + +       E+   R  A       +
Sbjct: 402 PLEVNVDGLTLTMNTVMGTPPATGQSETVIIQPMRRGAANIGVEMNDPRGLAGHRQTNIV 461

Query: 161 S-NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
             N     +              +     D ++  D++    +   G +T    +     
Sbjct: 462 EANPNNTGTAQLSQTSQQTPDALAGTYQIDIINSADLVSTANAANSGTATFEAISGAAAE 521

Query: 220 YTSDGTTLFETVPRDINFEKMNS------YTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
                 T+       ++    +           +E   +        +        G   
Sbjct: 522 NAVGNYTITVNAANKLSMADDSGNAVKLIDDTGAEVTELDYPLTTTGNTLTMVASDGSQV 581

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
           ++  + +      +  L       +   + +     + ++  G  +      L N   + 
Sbjct: 582 SVATLSNGAAANDEFTLAITTSDKLTVRNTQTNTLMDLKDDAGNTVQALAYPLTNANKEI 641

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
              +        S+                N     G    +    +      I      
Sbjct: 642 TFASQTAPTLSLSD----------DANVGDNFSVTLGRSSAVGGNTNFLAMQQIQHEKTM 691

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                ++++        +   +S++      +Q+ F+  SE  SN  GVNL EE + L+K
Sbjct: 692 NEGKSSVIDLFEGLATDIGMQKSNADKTAEVNQLDFDAASERVSNISGVNLDEEAANLMK 751

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +QSY  S++++    +   TL+  V
Sbjct: 752 FQQSYMASSRIMSVAKETFDTLMRAV 777


>gi|325982371|ref|YP_004294773.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212]
 gi|325531890|gb|ADZ26611.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212]
          Length = 423

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/473 (11%), Positives = 113/473 (23%), Gaps = 51/473 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS     +  NI N +   Y +     T                 +F  
Sbjct: 2   GFQQGLSGLSAASTNLDVVGNNIANVNTVGYKQSQAQFTD----------------IFAN 45

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            L    S+  Q  +      + ++ +  D    +    I+         S N    ++  
Sbjct: 46  SLDGAGSSRTQVGIGARVATVAQLFNQGDIAPTNNPLDIAINGQGFFRMSDN---GVISY 102

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           +           F T A  +       D    +            T ++  +        
Sbjct: 103 SRNGQFRLDGNGFLTDASGINLTGYAPDANGNINTGQATNLKLNTTDISPRVTSTFNLGF 162

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +     D                T    NN            F+++  D  F      + 
Sbjct: 163 NLPSNADA------------PAVTTFDANNTQSFNEKKSGVFFDSLGNDHAFTYYFQKSG 210

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T  +       V  + +         +     +  +               +    +  +
Sbjct: 211 TLANTWDMYASVDGAIDPTGVPMGVTLDGAASVTLTFDDNGILTAPTAPFNVSVDLATIN 270

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           P                   L        +  +    Q+ S                   
Sbjct: 271 PT------------------LGAGSPLVFALDLTTATQFGSQFGINLAQSDGYASGRLAG 312

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
              +    +  +Y +  NK      +A       L         W+E   S    +   +
Sbjct: 313 FTTSPEGIIQGNYSNGQNKTLGQVVLASFVNPQGLNPIGDG--RWIETPSSGQPLVGEPN 370

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  S   +  V+L  EL  +I  ++ Y  + K I   D +LQTL+  
Sbjct: 371 SGTLGVLQASAVESANVDLTSELVKMITAQRMYQANAKTIETQDAILQTLVNL 423


>gi|218700416|ref|YP_002408045.1| flagellar hook-associated protein FlgK [Escherichia coli IAI39]
 gi|218370402|emb|CAR18207.1| flagellar hook-filament junction protein 1 [Escherichia coli IAI39]
          Length = 547

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/553 (9%), Positives = 127/553 (22%), Gaps = 84/553 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAH----------------------SSAIGQQRLLQSFEALKEMM 90
              + E        L A                       +S       +Q F    + +
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---------------- 134
            ++     +    I K    +  +             ++ A                   
Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180

Query: 135 -----------VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                        + N    +  ++ ++ ++ + +E+S        +T+ N     + ++
Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240

Query: 184 KHDAHDFLDQRDVLLQKISEIIGIS------------------TIVRNNNDMVVYTSDGT 225
                      D     ++ I G +                     R+ +      + G 
Sbjct: 241 ARQLAAVPSSADPSRTTVAYIDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                        K             F  G               I A +    +V+  
Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                 +  +  +   +         +    +                 S T+       
Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 420

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   L    +            +          +      +      +    +  +   
Sbjct: 421 VNMDVLITDEAKIAMASAEDAGDSDN-------RNGQALLDLQSNSKTVGGAKSFNDAYA 473

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    +           V   +S    +  GVNL EE   L + +Q Y  + +++
Sbjct: 474 SLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 533

Query: 466 MFTDKMLQTLLEG 478
              + +   L+  
Sbjct: 534 QTANAIFDALINI 546


>gi|207092063|ref|ZP_03239850.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 606

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQHVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 NVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHYIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTAGFNNETKKFVIQPKNASQGLFVS----MKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 124/400 (31%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T+ ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++N  +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKLTNITDKLNQGKVGALLN--VYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++        F+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTAGFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|304413323|ref|ZP_07394796.1| flagellar hook-filament junction protein 1 [Candidatus Regiella
           insecticola LSR1]
 gi|304284166|gb|EFL92559.1| flagellar hook-filament junction protein 1 [Candidatus Regiella
           insecticola LSR1]
          Length = 470

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/484 (11%), Positives = 153/484 (31%), Gaps = 36/484 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQR 56
            +   +    A     ++  N+ N  N NY  ++   + +               +    
Sbjct: 13  LHIITSGLKVAQAGLKTVETNMGNKLNSNYSNQEMTISTTGPGLNSGINPGNGAKIEGIY 72

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   K     SS       +       E     +  N      ++     L     
Sbjct: 73  RRVNESHIKQESQTSSEYHYSETMSDSLTSLEKSVTVNLKNR-LQLKLNDFVVQLSEAEL 131

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + ++     +VI+ A+ +   FN   +++ + + +  ++ +  ++++ +  +++   N  
Sbjct: 132 HSTDKTTRLSVIEKAKGLASTFNDFNQQINQQKENLAEKSKSVVNDINQLCAQIAQANQK 191

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I    ++    +   DQRD  ++++S ++ +           +   DG  L +       
Sbjct: 192 IIEYQSNGTTNNSLCDQRDATVRELSTLLEMDLHRDAKGQYNISLKDGKQLVDGNMARKL 251

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T   +           +S+  +    G++ A+  +    +   Q  +  +A+ 
Sbjct: 252 -----ELTPLPQGGQTVKLHYSHTSDAINPACGGQLGAINDLAFETLSDLQKNIQTIAQT 306

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L   F+++     +     G  +     +        + +       + ++ +   D G+
Sbjct: 307 LADKFNQQLQAGYDLNGNKGEPLFKFFNNDPQGKILQVEQITPDQLAFSADATLPNDNGN 366

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           +                     C   NK    + ++ +    TL          +     
Sbjct: 367 I----------------KELENCLILNKEVRINTMSEMTIRETLDAVINQFTMGVA---- 406

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              ++   +++    I +  ++  GV+  E+ +  ++  Q Y    +LI    K+  +LL
Sbjct: 407 GHQEVTKLAKMNLEEIYQIRTSLSGVDENEQYAKFMEFTQHYQSMMELISSYKKIFDSLL 466

Query: 477 EGVK 480
             ++
Sbjct: 467 AAIR 470


>gi|261839850|gb|ACX99615.1| flagellar hook-associated protein FlgK [Helicobacter pylori 52]
          Length = 606

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 133/484 (27%), Gaps = 43/484 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNASYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQEAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKVNYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTSSLTDKDSADFDE 241

Query: 230 TVPRDIN-------------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           +   +I                   S      +   F       +N    + +GK+ ALL
Sbjct: 242 SYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDKLNQGKVGALL 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +          +  + + LD  AR LI S +     + +          +  +   +
Sbjct: 302 DVYNDGSNGTSKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + +      Y ++   +                +       +   D+  +N   
Sbjct: 362 TNYNIKNGSFD-LIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFD 420

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE----SYSNTVGVNL 444
           D       N T     +          S    +          +         +   ++L
Sbjct: 421 DYFTASFNNETKKFVIQPKNASQGLFVS----VKDNGTNFMGALKLNPFFQGDDASNISL 476

Query: 445 QEEL 448
            +E 
Sbjct: 477 NKEY 480



 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 123/400 (30%), Gaps = 7/400 (1%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQNFNTSA 142
             L+E++  +   ++  T  ++    +    S NL+               +V   + + 
Sbjct: 211 FHLRELLGGNVFKSSIKTSSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENK 270

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
             + ++   +D      I++         ++   +    ++        D  D+L     
Sbjct: 271 GGLNQVYFQSDDFKVTNITDKLNQGKVGALL--DVYNDGSNGTSKGKLQDYIDLLDSFAR 328

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            +  I +          +  +G  +             N    + +      DG  ++  
Sbjct: 329 GL--IESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARK 386

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQL--DEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
             +  P   +  ++Q  ++     Q+    ++       SF+ +              + 
Sbjct: 387 TIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLF 446

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             +KD        +           SN S  ++           +  + G  D+ N    
Sbjct: 447 VSVKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRSWLAPINGNFDVANMMQQ 506

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               +  F         + + E+ +   G +  +   S  +    + +   I +   +  
Sbjct: 507 LQYDSVDFYNDKFDVKQMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSIS 566

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++ EE+  LIK +  Y  + K+I   D+M+ TLL   +
Sbjct: 567 QVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ 606


>gi|331682584|ref|ZP_08383203.1| flagellar hook-associated protein FlgK [Escherichia coli H299]
 gi|331080215|gb|EGI51394.1| flagellar hook-associated protein FlgK [Escherichia coli H299]
          Length = 547

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/553 (9%), Positives = 123/553 (22%), Gaps = 84/553 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAH----------------------SSAIGQQRLLQSFEALKEMM 90
              + E        L A                       +S       +Q F    + +
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120

Query: 91  SADD----------------------------HYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++                               +      I    D + +Y+K ++   
Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180

Query: 123 LGKTVIDNAEEVVQNFNTSAR---------EVQKIRADADKEIELEISNLRRFLSELTVV 173
              + +          N   +         ++  +           I+    +       
Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKI--------SEIIGISTIVRNNNDMVVYTSDGT 225
              +    +S   +   +   D     I        +  +G     R+ +      + G 
Sbjct: 241 ARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 300

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                        K             F  G               I A +    +V+  
Sbjct: 301 LALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLAT 360

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                 +  +  +   +         +    +   D             S T+       
Sbjct: 361 DYKISFDNNQWQVTRLASNTTFTVTPDASGKVAFDDLELTFTGTPAVNDSFTLKPVSDAI 420

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   L    +            +          +      +      +    +  +   
Sbjct: 421 VNMDVLITDEAKIAMASAEDTGDSDN-------RNGQALLDLQSNSKTVGGAKSFNDAYA 473

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +    +           V   +S    +  GVNL EE   L + +Q Y  + +++
Sbjct: 474 SLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 533

Query: 466 MFTDKMLQTLLEG 478
              + +   L+  
Sbjct: 534 QTANAIFDALINI 546


>gi|149911696|ref|ZP_01900304.1| Flagellar hook-associated protein [Moritella sp. PE36]
 gi|149805226|gb|EDM65243.1| Flagellar hook-associated protein [Moritella sp. PE36]
          Length = 659

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 144/428 (33%), Gaps = 17/428 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT---MTTISPENVTVVTQRSEN 59
           +  +     +      +   +   NI N + + Y R+ T     T +      VT R  N
Sbjct: 1   MANLLQIGTSGVLGHQKMLNTTGNNISNVNTEGYSRQRTQHNSQTDNMGLARSVTGREIN 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
           +    +VL   S    + + L       +++      +N+    +S L +S  + + + +
Sbjct: 61  RFAQAEVLLDTSKFNNRDKFLTEITRTDQVL---SDSSNNLGSGVSTLFESFHTLNDDPT 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                +  + +A+ +V +F +  +++Q     A+ EI  +   L   + E+  +N  +  
Sbjct: 118 SLSTRELALSDAKSLVSSFRSVGKQLQSQMKTANDEITAKPDLLNALIKEIHGLNQQVMI 177

Query: 180 KTASKHDAHD-FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +        LD+RD  ++ ++  + ISTIV +N  + +    G  L       ++  
Sbjct: 178 ANNTSQGVSGTLLDKRDESIKALASEVDISTIVNDNKSISINLISGQPLVMQ--SSVSQF 235

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +    +  N + ++      +       G + AL   RD VV     ++ ++A  + 
Sbjct: 236 TAVTNNPQTSINELVLNIDNNQISLQETELGGTVGALFTFRDDVVYPALREIGQLALGIG 295

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            + + ++ +  +     G  I    + +              N ++    S     G   
Sbjct: 296 SAINSQNRMGLDLNGQLGKDIYGMPETMAQGY------HDNSNSEHMVTSSIRPTEGGSL 349

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA--RNSIGWLEKNRS 416
               + V   +     +    D                 VT+ E+    +    +   +S
Sbjct: 350 TVSQYQVTMTSPLTFDVYEIKDGQKSTNPLPISGAYPGPVTVDEHGFDIDFSAAVGGFKS 409

Query: 417 DSHDLHMK 424
               +   
Sbjct: 410 GDKFILSP 417



 Score = 90.9 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/368 (10%), Positives = 98/368 (26%), Gaps = 3/368 (0%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N    +         +++     T A+                       L+    
Sbjct: 295 GSAINSQNRMGLDLNGQLGKDIYGMPETMAQGYHDNSNSEHMVTSSIRPTEGGSLTVSQY 354

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                   T   ++  D     + L    +    ++      +        G    +   
Sbjct: 355 QVTMTSPLTFDVYEIKDGQKSTNPLPISGAYPGPVTVDEHGFDIDFSAAVGGFKSGDKFI 414

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   + Y VT+           + S++ +         +  I DS +    N L+ 
Sbjct: 415 LSPTLFNFDDYQVTASRPEDIALSSALRSSRNANNITDSQLVVSNIFDSSLSFSNNALNM 474

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A   +   +  D    ++        +  +   D               + + + +   
Sbjct: 475 AAPQRVTVNNSGDFDIFDANGTLLATTSSTLLGSDLLANSVPPLNPQTGYEIKISGN--- 531

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                S    +N  +     + +             + V      +T+ E     I  + 
Sbjct: 532 PNPGESFSLHYNSNSAGDNTNGLKLAGLESENTLRQNKVTSGGNQMTISEGISTLISGIG 591

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +      S+           +  GVNL EE + +++ EQ+YN S +++  + ++ 
Sbjct: 592 NKTRAARVDQSASESKLTQSQNWVESVSGVNLDEEAANMVRYEQAYNASARVVSISKEIF 651

Query: 473 QTLLEGVK 480
            T+L   +
Sbjct: 652 DTILNAAR 659


>gi|163785770|ref|ZP_02180270.1| Flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878962|gb|EDP72966.1| Flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 219

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 2/220 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSEN 59
           MS+  + +          +       NI N  +  Y R++       PE V +       
Sbjct: 1   MSIFGLLSLGSQALLTNQKSVNITNENIANQYSDGYARQNVSLQDIVPEGVDIKRIERVF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            N   K     +  +       +  +  E M  +D         ++K  +S    + N  
Sbjct: 61  DNGLFKRYLNLNQEVSSDETYTNLLSEIETMF-NDIQGTGFYKNVNKFFNSFSDVAINPD 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +      VI  A ++V     +   + K+R +    I+  ++ +   +  +  +N  IK 
Sbjct: 120 DPAARDAVISAANQLVAKIRDTYNNMTKVRDEISLSIKDNVNKVNNIIKHIAQLNKNIKA 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
               +   +++L+QRD LL+++S  + I  + R++N   V
Sbjct: 180 FKFDETRLNNYLNQRDALLKELSSYMDIKVVYRDDNTTDV 219


>gi|300854137|ref|YP_003779121.1| Flagellar hook-associated protein [Clostridium ljungdahlii DSM
           13528]
 gi|300434252|gb|ADK14019.1| Flagellar hook-associated protein [Clostridium ljungdahlii DSM
           13528]
          Length = 638

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 141/446 (31%), Gaps = 24/446 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++FN A++              NI NA+   Y R+      +               
Sbjct: 3   GLFSIFNTAKSGLFAQQTAINVTSHNIANANTDGYSRQRADMETTTPYTLPSVDGAAGAG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTH 102
                VTV +      +  D  +     A GQ +    + +  E +     +      + 
Sbjct: 63  QLGTGVTVDSIERIRDSFLDYQIRVEKGANGQYKARDKYLSQVEKVLGTDVESSGTGISS 122

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            I K      S+    +      TV + A ++    N +  +V  I+ + + EI+  + N
Sbjct: 123 LIQKF---FSSWQSLSTSSQNVSTVKEQAYQLTNELNHTYSQVSNIKTNTNTEIKNVVVN 179

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   L +++ +N  IK   A+  + +D LD RD+LL ++S   GI+   ++++ + V TS
Sbjct: 180 VNNILGKISNLNQQIKDTKATGQNPNDLLDSRDLLLDQLSSEFGINITDKDSDGIDVTTS 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +  ++          +      V S++       V   S   +          +    + 
Sbjct: 240 NSASVEGDNGSAPLLDGKPLNIVQSDNPDDT--NVASFSYITNITAVADSNGNVTKDSNG 297

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
             +++    +    L  +      +   S+    L     +    + +   ++     + 
Sbjct: 298 NTVYKVDYYKKGDTLTDANKVSIYVGMTSDQEKELDENRVLWADADGVAYKVTGGQDPSG 357

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +  +     +  G+      ++   +   P        S  KN         N    L  
Sbjct: 358 KAATVVDGEKLDGTSVDPISFSELAIFRPPTGELKGYTSVQKNIDDYQDELNNFAKGLAL 417

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVV 428
                I       +D+         +
Sbjct: 418 SVNAIISQSSTWVADNVTDGSAEGGI 443



 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 66/190 (34%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N      +     +S  D     + N+                 +  S+   ++     N
Sbjct: 445 NFFVNADQKDSSKYSAVDENNITAANITVNVAIMNDPSKIKVDTKYDSKGNSLSTSTDGN 504

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +      + S   +  + + +   DL+ +   S +       V  ++   TL  Y  + 
Sbjct: 505 RAVAVAQLANSLMNIGGITSDSSRSDLLKNIFKSDSTINNVYSVGKVDGGSTLDNYFNDL 564

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +  ++        V     ++S     GV++ EE++ LI+ +  Y  + K+I  
Sbjct: 565 VNKVGNHEQEAKQTLDTQSVQLQSYTQSREANSGVSIDEEMTNLIQFQHCYQANAKMIST 624

Query: 468 TDKMLQTLLE 477
            D++L  ++ 
Sbjct: 625 VDELLDVVIN 634


>gi|88704306|ref|ZP_01102020.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71]
 gi|88701357|gb|EAQ98462.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71]
          Length = 429

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/483 (10%), Positives = 113/483 (23%), Gaps = 66/483 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F+ A +  N A+     +  NI NA    +                          V+ 
Sbjct: 2   AFSTAISGINAATADLGVVSNNIANASTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++++        F  L                     +   E + 
Sbjct: 62  AGVTQEFGQGNITFTNNSLDLAINGNGFFQL-------SVEGAVEYTRAGNFQVDREGFL 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +     L    +D   +V         ++  I+ D         SN+    +  +    
Sbjct: 115 VSNQNARLQGFQVDGGGDVT-------GQLGDIQIDTSLIDPNPTSNVSLTSNLDSREVT 167

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  +       +          +     +      N  V+        +       
Sbjct: 168 TGTGFATNGPYDAFAVPPTAPSPADFNATTSTTIFDSLGNPHVLSLY-----YVKTANPN 222

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            FE  +     S+       G  V+    S                              
Sbjct: 223 EFEVYSLIDGQSQDPGTGTVGDPVTLQFTS------------------------------ 252

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                  + DP +    +V      D    ++    Q     +    Q+ +  +      
Sbjct: 253 -----NGQFDPASDTQIDVTAWTPVDSTGAVNGAAAQTFVVDLQQTTQFGTAFAVSSVIQ 307

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +         Y +  ++      +A  N    L         W+E   
Sbjct: 308 DGFAAGQLRGLEIDESGIAFARYTNGESRALGQIALASFNNQNGLQPVGD--TNWVETFS 365

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S S ++          +  +      V + +EL  LI  ++++  + ++I   D + QT+
Sbjct: 366 SGSPNVGEPGTSGLGAVQSAALEDSNVEITQELVDLIVAQRNFQANAQVIQAEDAITQTV 425

Query: 476 LEG 478
           +  
Sbjct: 426 INL 428


>gi|295097203|emb|CBK86293.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 404

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/475 (9%), Positives = 112/475 (23%), Gaps = 75/475 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--ENKNMF 63
            F++  +  N A++    +  NI N+    +              T +  +     +N  
Sbjct: 2   SFSQGLSGLNAAAKALDVVGNNIANSQTAGFKAGSVAFADIFAGTTGLGVQVAGVTQNFG 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D  L A +S++      + F  +                   + +        N +  + 
Sbjct: 62  DGGLTAGNSSLDMGLQGKGFFRMV------SEGGAVYYGRNGQFKQDQNGNIINSTNGLY 115

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                                ++    D         S      S+ T +          
Sbjct: 116 LTGYQATGTPPTIAPGAPVGPIRIPTEDMPPAASTAGSLTGNLKSDDTTI---------- 165

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                                  I+     ++             +T+      +     
Sbjct: 166 -----------------------ITDSFDYSDPKTYNYQSQIEATDTLGNKHTVKVYFVQ 202

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T   E      D     +                  D      +   +        + ++
Sbjct: 203 TAAGEWKAYARDETAPGTP-----------------DVTSLDLKFDSNGNMDTAAMASTK 245

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                        L I                  +    +  ++     D         +
Sbjct: 246 MTINGAAFNGSAPLSIDM---------------DLSSLTRRATDSLVKVDTIDGQAPGKY 290

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
               +    +++  Y +   +      +A    +  L     N   W E  +S    L  
Sbjct: 291 QSFVIGDSGEVVATYSNGQRQTVAQIVLADFANSGGLAAEGNNV--WSETPQSGQPFLGT 348

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                F  I+ +      V+L +E+  +I  +++Y  +++ I    ++LQTL+  
Sbjct: 349 SGSGSFGTINGNMLEQSNVDLGQEMVNMIVYQRNYQSNSQTIKTQSELLQTLVNL 403


>gi|317153838|ref|YP_004121886.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944089|gb|ADU63140.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 711

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 104/323 (32%), Gaps = 21/323 (6%)

Query: 1   MSL--LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PE 48
           MS    ++ +  +     +  Q      NI N + + Y RR  +                
Sbjct: 1   MSFGANSILDMGRWALFASQVQLQVTGENIANVNTEGYSRRSAILEEGPYIDYSPGQLGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V           M + +    +S   +   L       E +  ++      ++ +S+  
Sbjct: 61  GVKAKEVVRNFDEMVESMYVGQASMRDKWGALWEQLKGVENLL-NESTGTGISNSLSQYF 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +S    S+  +     + V+++A  ++       +++  ++   +  +  +++     + 
Sbjct: 120 NSWNEVSQRPNNYGARQGVLNDAATLISTLAQVDQDLSLMQQRINTTVAAQVTEANTLME 179

Query: 169 ELTVVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           E+  +N  I+       ++A+   D+R   ++++SE++ I+TI        V T  G TL
Sbjct: 180 EIADLNKEIQVHNIEGSNNANALFDERARKIRELSELLDITTIDSGGGKFTVLTKAGHTL 239

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-------KGKIKALLQIRD 280
            +              +   ++   F   +    N              G   A     D
Sbjct: 240 VDGANHYSLEFLAPQKSADLQNTSTFAGNIYFDGNDDFEYTIEFVSPGGGSAVAGEVGSD 299

Query: 281 SVVPIFQNQLDEMARVLIGSFSE 303
           S    ++  LD     +      
Sbjct: 300 SSAAQYRVSLDGGKTWVADEDGN 322



 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 55/444 (12%), Positives = 116/444 (26%), Gaps = 17/444 (3%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                       V  +   + +     +    S  G +  +   +  +++  A D+ +  
Sbjct: 280 TIEFVSPGGGSAVAGEVGSDSSAAQYRV----SLDGGKTWVADEDGNEKLFYARDYDSRV 335

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               +     S      +             +      +  +    Q+I        E  
Sbjct: 336 NVEGLQLWFGSTTDSKGDPIGQFAVGDRFIISPHQGLYWVENTSSKQEITPQTHFNGEEN 395

Query: 160 ISNLRR---FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            S L             N   K++   ++     + + +    + + +   S +      
Sbjct: 396 TSRLTGGSLAALLTFRDNYIGKYREKLENLTETLVWETNRRHSQGAGLQAFSVVEGTYGV 455

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                + G+     V             V + S  +      +              A  
Sbjct: 456 SDPTKALGSDSTGLVFGSRLQSGTAFMYVYNTSTGLLASSASLDFG---------GGATF 506

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                 +   Q  ++      I +    + +   +E             L   L      
Sbjct: 507 NPEIHSLEDVQAAINTTFAGSISASIVNNKLILEAEEGRTFAFGTDSSGLMAALGINTFF 566

Query: 337 TICVNPQYRSNPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                   + N     D   ++        +  AG                    V    
Sbjct: 567 QGSTPMDIQINAKLSGDLDYLATGHVNGAGEMNAGDNTTALSMYALREAQVTISSVVEGT 626

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           T  +LL+Y    +G +  + + +         +   ++E      GVNL EE+S LI+ +
Sbjct: 627 TKTSLLDYYNGLVGNVGTDTNRAKFNFNFYNTLATDLNERQQQVAGVNLDEEMSNLIRYQ 686

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
            SY  + KLI   D+MLQT+L   
Sbjct: 687 ASYTAAAKLITTADQMLQTILSLK 710


>gi|84502376|ref|ZP_01000512.1| flagellar hook protein FlgE, putative [Oceanicola batsensis
           HTCC2597]
 gi|84389188|gb|EAQ01985.1| flagellar hook protein FlgE, putative [Oceanicola batsensis
           HTCC2597]
          Length = 422

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/473 (11%), Positives = 121/473 (25%), Gaps = 58/473 (12%)

Query: 15  NNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRS--ENKNMFDKVL 67
              S+  A I  NI N+D   + R       S        V+    R+   ++N  D   
Sbjct: 1   MANSKAVARISYNIANSDTYGFRRSFAQMLTSGATIPTGTVSASGVRAEVVHQNTQDGTP 60

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
               +A         F A+   ++                +   E Y +N S   L    
Sbjct: 61  LTTGAATNLAISGNGFFAVTRNINEGTGEPEHFMTRAGDFQPDSEGYLRNASGMYLAGFP 120

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
            D +  +          +Q +R           S +    +  +                
Sbjct: 121 YDESGSLGVIDRNQFSGLQTVRIAEMSIAGNPTSEMTLTGNLPSQETGLATPGDPFISSI 180

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
             F         + S     +             +   +L             +S  +  
Sbjct: 181 EYFTPLGAAERLQFSWQPSSTANEWQLEVTDSSGASYGSL--------TATFNDSGPLAG 232

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
             +         ++    +       A + + +   P                       
Sbjct: 233 TPSGFSAVTSTATAPAAFSFDTSTGVATVTVNNGTTPQTI-------------------- 272

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                                 +  G   T     Q+  +   L      ++        
Sbjct: 273 ---------------------TVDMGAPNTFGGLSQFSGDYVPLVGNADGTQSGSLARAE 311

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           ++    +   + +   +     P+A +     L+    ++  +L    S S  L M    
Sbjct: 312 ISNDGVVYGIFDNGMRRALYQIPLATVPNPNGLMT--ADNATFLVSEASGSFTLSMAGSG 369

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               I+     +  V++ EEL+ LI+ +++++ + K+I   D+ML   +   +
Sbjct: 370 TAGEITGGSVESSNVDIAEELTELIQKQRAFSSNAKIITTADEMLDETVRLKR 422


>gi|270262401|ref|ZP_06190672.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13]
 gi|270043085|gb|EFA16178.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13]
          Length = 410

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 104/476 (21%), Gaps = 71/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          +N 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   S A+        F  L++                 + +        N+    
Sbjct: 62  KGGTTTGTSRALDVAISDNGFFRLQDK------DGGIFYSRNGQFKLDENRNLTNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L       +             +Q+        I   +   +   S   V N     K  
Sbjct: 116 LTGFPAAGSPP----------TIQQGANPVPLSIPEGMMTAKSTTSGTMVANLKSTHKVP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                                                   +  T ++++    N      
Sbjct: 166 DNK------------------------TFDPAKQDSYNYVNSITAYDSLGNVHNINAYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       +G +  S    A                                 S +
Sbjct: 202 KTSDNNWQVYTQEGNIPGSPVTDAGTM--------------------------AFDTSGN 235

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                +          +                       Q  S+ S  +          
Sbjct: 236 LVSTTSKQGTTGEFSMLIPMSATNGAPAQNFSLSFAKSMQQSVSSDSVSKVSQDGYTAGE 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +   +    L     N   W E   S    + 
Sbjct: 296 YTNFQINNDGSVVGIYSNQQTQLLGQIVLTNFSNPEGLSSQGDNV--WQETGASGQPRVG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++        V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 354 LAGSGGFGKLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 409


>gi|115523193|ref|YP_780104.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53]
 gi|115517140|gb|ABJ05124.1| flagellar basal body FlaE domain protein [Rhodopseudomonas
           palustris BisA53]
          Length = 411

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/481 (8%), Positives = 99/481 (20%), Gaps = 71/481 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  V     +  N  S + +++  NI N +   Y R  T  +         +  S + 
Sbjct: 1   MSLYGVMRTGGSGMNAQSNKLSTVADNIANVNTTGYKRASTEFSSLILKSGSGSYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYSKNLS 119
               +   +                      A                    E    N  
Sbjct: 61  ETQVRYAISDPGTTQYTTSATDLAIQGNGFFAVADARGTPFLTRAGSFVPDGEGNLVNAG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                    +               ++K+       I                 N     
Sbjct: 121 G--YYLLGYNLKNGPPNVVANGLTGLEKV------NIGQTALEGNPSTKGTASANLDSNA 172

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +   A                                 +      ++ +   +  + 
Sbjct: 173 AITAGPPA-------------------------------YTSKTSLVTYDNIGNKVTLDI 201

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
               T  +  N    D    ++                                +  L  
Sbjct: 202 YAYKTAANTWNMEVYDNATSTAG--------------------------GFPYSSPALAT 235

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                D  A     +           +       +  +        +     +     + 
Sbjct: 236 DTFTFDVSATGKGRLDAASPTSLALTIPGGSAFTLDLST---MTQVAAEFQFKATVDGNS 292

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                   + G   +   Y D         P+A + +   L+    N    +  + S + 
Sbjct: 293 PSAIEKVEVDGDGTMYAIYNDGTRLATYRIPLATVPSPDKLVPEVGNVYS-VGID-SGNV 350

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +          +         V+L  EL+ +I+ ++ Y  ++K+      +L  L+   
Sbjct: 351 QVDFAGNSGLGTVKAKALEQSNVDLASELTAMIESQRGYTANSKVFQTGADLLDVLVNLK 410

Query: 480 K 480
           +
Sbjct: 411 R 411


>gi|315453582|ref|YP_004073852.1| putative flagellar hook-associated protein [Helicobacter felis ATCC
           49179]
 gi|315132634|emb|CBY83262.1| putative flagellar hook-associated protein [Helicobacter felis ATCC
           49179]
          Length = 606

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/463 (13%), Positives = 129/463 (27%), Gaps = 50/463 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTI--SPENVT 51
            +L+  N +                NI NA+++ Y R+  +         T       V 
Sbjct: 3   GILSSLNTSYTGLQAHQVMVDVTGNNISNANDEFYSRQRVIARPQNSLAFTDRNVNMGVN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V T +  +           +                      D       + +     + 
Sbjct: 63  VETIQRVHDEFVFARYAKANQEHAFYSTQFDNLREASSYF-PDMNEVGIQNDLQNYFSAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  +KN       + +    + + +N   +   +  ++  A +E+   +  + R  +E+ 
Sbjct: 122 KDLAKNAKSPATKQALAQKTQTLTRNIQDTRARLVALQYKASQELVSSVKEVNRIGAEIA 181

Query: 172 VVNDAIKFKTASKH--DAHDFLDQRDVLLQKISEIIGIST------IVRNNNDMVVYTSD 223
            +N  +K    SK    A++  D+RD L   + E+IG +           N+  V    D
Sbjct: 182 NINRHLKEMEDSKTLKQANELRDKRDALEFHLKELIGGNVSKFHVQTNSANDIKVADFDD 241

Query: 224 GTTLFETVPRDIN-------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           G         +I            NS      +   F      + N    + +GK+  L+
Sbjct: 242 GYVFNVGYGFNIVDGAIFHPLVVDNSDNKDHLAQIYFQGDDFKTINITDKINQGKVGGLM 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            I +          +  + + LD  A+ LI S +     +        +   +    L +
Sbjct: 302 GIYNDGSHGTIKGKLQNYIDALDTFAKGLIESTNAIYAQSAAHNVQGKIVEFEDRTALKD 361

Query: 329 KLCQGISETIC----------------VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                   +                        +    +    + +     N        
Sbjct: 362 TNYNIKEGSFDVVAYNTDGKVLAKRTIHITPITTMKDVIAQINANTDDNHDNNTTNDFDD 421

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               H+ +   K  I          V++ ++  N  G L  N 
Sbjct: 422 YFSAHFDNKTKKFSIQAKNPSQGLFVSIRDHGSNFTGALGLNT 464



 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/401 (10%), Positives = 107/401 (26%), Gaps = 27/401 (6%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               I          + + ++  +          V   FN     +       + + +  
Sbjct: 213 LKELIGGNVSKFHVQTNSANDIKVADFDDGYVFNVGYGFNIVDGAIFHPLVVDNSDNKDH 272

Query: 160 ISNLRRFLSELTVVN--DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
           ++ +     +   +N  D I                   +  K+   I            
Sbjct: 273 LAQIYFQGDDFKTINITDKINQGKVGGLMGIYNDGSHGTIKGKLQNYIDALDTFAKGL-- 330

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                    ++          K+  +   +       +    S +  +    GK+ A   
Sbjct: 331 ---IESTNAIYAQSAAHNVQGKIVEFEDRTALKDTNYNIKEGSFDVVAYNTDGKVLAKRT 387

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           I  + +   ++ + ++        +  +    + ++       +  K    +        
Sbjct: 388 IHITPITTMKDVIAQINAN--TDDNHDNNTTNDFDDYFSAHFDNKTKKFSIQAKNPSQGL 445

Query: 338 ICVNPQYRSNPSF---LRDGGSVSKKFLWNVKN---------------LAGYPDLINHYC 379
                 + SN +    L             + N               + G  D+ N   
Sbjct: 446 FVSIRDHGSNFTGALGLNTFFDGDSARNIALNNTYKKEPTALRPWLAPINGNFDVANMMQ 505

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                   F      N  +T+ E  +  +  +      S       + +   + + ++  
Sbjct: 506 QLQYDKIDFYQHKLSNAPMTIEESYQFVVSKVHTEAEKSQRTLESKEAILGVVKKEHNAI 565

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            GV+  EE+  LIK +  Y  + K+I   D+M++TLL   +
Sbjct: 566 SGVSTDEEMVNLIKYQGGYAANAKVITAIDRMIETLLGMKQ 606


>gi|297538896|ref|YP_003674665.1| fagellar hook-basal body protein [Methylotenera sp. 301]
 gi|297258243|gb|ADI30088.1| fagellar hook-basal body protein [Methylotenera sp. 301]
          Length = 422

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/483 (10%), Positives = 115/483 (23%), Gaps = 73/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55
            F +  +  N AS+Q   I  N+ NA+   + +          N                
Sbjct: 2   SFQQGLSGLNAASKQLEVIGNNVANANTVGFKQSRAEFADVFANSLTGGGGTQIGIGTNL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      + + ++++        F  +                   + +   + Y 
Sbjct: 62  STVAQQFTQGNVTSTNNSLDIAINGGGFFRMTNN-------GAVTYSRNGQFKMDKDGYI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +   L     D    + +                D +I       +     + +VN 
Sbjct: 115 VDSASKHLTGYAADTTGAIQKGAP------------VDLKINTADLQPKATAKIVGLVNL 162

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
             +  T +                  S     +        +     +  TL     +D 
Sbjct: 163 DSRKATPAVTP--------------FSPTDPTTYTDSTAVTVFDSLGNSHTLQTYFVKDP 208

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                  +T     +   +     +    +                              
Sbjct: 209 APNVWKVFTTADGISTTTLPTPTTTLTFPATGTG-------------------------- 242

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +G           +   P +  A             ++     + Q+ SN S      
Sbjct: 243 --LGPTPATPTAVTFAPLNPPIPPATTPTIPTGAAPVTLTIDYSASTQFGSNYSINSLTQ 300

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N      +   Y +  ++      ++       L     N   W E + 
Sbjct: 301 DGYTSGRLAGFNTGADGIITGRYSNGQSRALGQVVLSSFANPNGLQSLGGN--AWSESST 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +    + +      +  S       +L  EL  +I  ++ Y  + + I   D++LQTL
Sbjct: 359 SGTPLTGVPNTGTLGVLQSSAVEDSNTDLTAELVNMITAQRYYQANAQTIKTQDQVLQTL 418

Query: 476 LEG 478
           +  
Sbjct: 419 VNL 421


>gi|89072308|ref|ZP_01158887.1| putative flagellar hook-associated protein [Photobacterium sp.
           SKA34]
 gi|89051840|gb|EAR57292.1| putative flagellar hook-associated protein [Photobacterium sp.
           SKA34]
          Length = 286

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 109/313 (34%), Gaps = 27/313 (8%)

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +S +  +N  +    A+  +    +D+RDVL++++SE++ IS+  + +  + V  + G  
Sbjct: 1   MSNIADINHRVVETQATGGNPSQLIDERDVLIKQLSEVVEISSTQQLDGSLQVTLASGQP 60

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L                    ++  I   G   +    +    G++ A        +   
Sbjct: 61  LILGSDAAQLKSTPIVNEPFIKNIEIDFSGQTFAV---TGELGGQLGAFDNYLKDTLKPT 117

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           Q  LDEMA+ L   F++      +    PG  +     +                     
Sbjct: 118 QQALDEMAQNLATEFNQVLATGTDLNGDPGQALFSFDPNSPA------------------ 159

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
             S L        +   +     G  D++    D   K      +     +VTL +   +
Sbjct: 160 --SSLDITAIKPAELALSSDGAPGNSDVLQDLIDLSTKPMTITGL----GSVTLNDAFAS 213

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +G        +      ++ +F+  + +  N   VN  EE + L+    +Y  + K+I 
Sbjct: 214 MVGKTAIETRQAAVDQKAAETLFSQANAARDNLSAVNSDEEAANLMTFTNAYQANMKVIS 273

Query: 467 FTDKMLQTLLEGV 479
             +++  ++L  +
Sbjct: 274 TANELFDSVLRLL 286


>gi|330889076|gb|EGH21737.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 546

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/417 (12%), Positives = 128/417 (30%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  MTT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + +          +  ++     ++
Sbjct: 62  SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLL--SDSATGVSTQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++       +  A  +   FN+ A ++     + + ++      +    + L  
Sbjct: 120 GIATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I    A     +  LD R+  +++++ ++G+  I  N N  +   +  + +     
Sbjct: 180 LNKQITQAGAGNTTPNSLLDSRNETVRQLNGLVGVKVIENNGNYDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YTMSATPSPADPLQYNVQIAY---GQTKTDVTSVISGGSIGGLLRYRSDVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    +   +T         + +   
Sbjct: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTPNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAA 413


>gi|268679766|ref|YP_003304197.1| flagellar hook-associated protein FlgK [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617797|gb|ACZ12162.1| flagellar hook-associated protein FlgK [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 614

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/472 (12%), Positives = 145/472 (30%), Gaps = 30/472 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M + +  N   +  N A    A+  +NI N DN  Y R+    + S             V
Sbjct: 1   MGIFSTLNTGTSALNAAQVAVATTSQNIANVDNPYYTRQRVTLSASDALNTKGVSIGTGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           ++ +    +       L   S+++      +            D  ++  +  ++    +
Sbjct: 61  SITSIVRIHDEFVFSKLRTSSTSLAYDSYSKQVLEEVAQKF-PDLDDSGISQNVADYFAA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
               S N SE      ++  A  +  N  +S   ++ ++   +++++  +  +     ++
Sbjct: 120 WNDLSTNASEGSQKIALVQLASTLTSNIQSSKESLRSLQDTLNEQLKTSVDEINSIGQQM 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIV---RNNNDMVVYTSDGTT 226
             +N  I    +   + A+D  DQRD L   +S ++G++       ++  +    +D  T
Sbjct: 180 ADLNKQINLIESEEGNYANDLRDQRDELELTLSNLVGVTVSKGKVNSDTTVDANMTDSGT 239

Query: 227 LFETVPRDINFEKMNSYTV---------TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
            +       +F   +++           ++  +           +    +  GK+ A L 
Sbjct: 240 DYYINIAGSSFVDGSTFHPIVIDNTSNTSNFYSVYSESQDGTRYDLTELLSGGKVGATLD 299

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +R  +V   QN    +   + G     D  A           A   ++        +   
Sbjct: 300 LRGRIVDASQNDGYPLDGTIQGYIDNLDTFAQTLITETNNIYAQSAQEGMQSPVLDLKAN 359

Query: 338 ICVNPQYRS------NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
             +   Y +      +       G    +   ++ +     D           N   D  
Sbjct: 360 TALQNAYNNIQNGTFDLIVYNSEGEEVARKSVSINSATTMGDDTFSESILTQINTNSDDN 419

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              N    L +Y   +              +    + F     ++   +GV+
Sbjct: 420 GDNNGLNDLDDYFTATFLDDGTFSLTPKGYNTGYTIAFEDKGTNFPGVIGVS 471



 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/435 (12%), Positives = 120/435 (27%), Gaps = 33/435 (7%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +   VTV   +  +    D  +    +         S          D    +      
Sbjct: 212 SNLVGVTVSKGKVNSDTTVDANMTDSGTDYYINIAGSS--------FVDGSTFHPIVIDN 263

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +    +  S      +          +   V         +     +    ++  I    
Sbjct: 264 TSNTSNFYSVYSESQDGTRYDLTELLSGGKVGATLDLRGRIVDASQNDGYPLDGTIQGYI 323

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L               ++            L    +     + I     D++VY S+G
Sbjct: 324 DNLDTFAQTLITETNNIYAQSAQEGMQSPVLDLKANTALQNAYNNIQNGTFDLIVYNSEG 383

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             +        +   M   T +            ++    ++   G    L  + D    
Sbjct: 384 EEVARKSVSINSATTMGDDTFSESI---------LTQINTNSDDNGDNNGLNDLDDYFTA 434

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            F +              +                  G+  +   L    +  I V  QY
Sbjct: 435 TFLDD------GTFSLTPKGYNTGYTIAFEDKGTNFPGVIGVSQFLTGTNASDISVATQY 488

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           + +PS ++   +           + G   + N           F    G +   T+  + 
Sbjct: 489 KKDPSLMQGYSAP----------VDGNNKVANAMVQMQYSTLGFYSKTGSSVQDTIEGFY 538

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +    +  + S ++  +  +  +++ +   Y +  GVN  EEL+ LI+ + SY+ + K+
Sbjct: 539 SSLTTKIGSDASTANSNYDTNDALYSSVYTQYQSVSGVNKDEELANLIQYQSSYSAAAKI 598

Query: 465 IMFTDKMLQTLLEGV 479
           I   D+ML+TLL   
Sbjct: 599 ITTIDQMLETLLGIK 613


>gi|238793998|ref|ZP_04637616.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909]
 gi|238726630|gb|EEQ18166.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909]
          Length = 425

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 115/476 (24%), Gaps = 56/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTPTTTNRRLDLAISQSGFFRMQD------SSGGVFFARNGQFKLDENRNIVNMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    +      +      +      T 
Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQDMIAAKATT 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +   +     DV          I+              +  T ++++           
Sbjct: 151 SGNMVANLTSTHDV----------ITATFDPQKPDTYSFVNNMTTYDSLGNRHVINVYYV 200

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T     N         S N  +    G +    +  D   P   +    M     G+  
Sbjct: 201 KTAEDAVNG-------NSWNVYTKDSSGTLADATKPFDPADPAAASLRGTMVFDTNGALK 253

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                AG ++    + +A             ++ +   N         +    +      
Sbjct: 254 SVKNGAGTTDFNLTVPMAVVNGAPAQTFALNVAGSKQQNTGTDG---IVTQNQTGYAAGE 310

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +   +    L     N   W E   S +  L 
Sbjct: 311 FTGFQINNDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLSPEGDNV--WKETKSSGNPILG 368

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 369 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 424


>gi|330967090|gb|EGH67350.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 441

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/479 (10%), Positives = 104/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +         +
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E +  N +
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  +                ++NL    +  T+       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLKVDSSNLEPKATTAITNVANLNSTTALPTL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSIANPATTTADKNDLTFDSSGNLVVAAPGTVPTDSANITFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQTGTGTTTSWVANGATGSSIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDSTGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                       I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGSITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|22126390|ref|NP_669813.1| flagellar hook protein FlgE [Yersinia pestis KIM 10]
 gi|45441409|ref|NP_992948.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596011|ref|YP_070202.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953]
 gi|108807173|ref|YP_651089.1| flagellar hook protein FlgE [Yersinia pestis Antiqua]
 gi|108812483|ref|YP_648250.1| flagellar hook protein FlgE [Yersinia pestis Nepal516]
 gi|145598610|ref|YP_001162686.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F]
 gi|149366251|ref|ZP_01888286.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125]
 gi|153950658|ref|YP_001401290.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758]
 gi|162421636|ref|YP_001606473.1| flagellar hook protein FlgE [Yersinia pestis Angola]
 gi|165925992|ref|ZP_02221824.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938693|ref|ZP_02227248.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010935|ref|ZP_02231833.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210871|ref|ZP_02236906.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401045|ref|ZP_02306548.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420383|ref|ZP_02312136.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425748|ref|ZP_02317501.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|170024647|ref|YP_001721152.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis YPIII]
 gi|186895114|ref|YP_001872226.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+]
 gi|218928922|ref|YP_002346797.1| flagellar hook protein FlgE [Yersinia pestis CO92]
 gi|229896242|ref|ZP_04511412.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A]
 gi|229897177|ref|ZP_04512333.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897903|ref|ZP_04513054.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902865|ref|ZP_04517982.1| flagellar hook protein FlgE [Yersinia pestis Nepal516]
 gi|270486645|ref|ZP_06203719.1| flagellar hook protein FlgE [Yersinia pestis KIM D27]
 gi|294504030|ref|YP_003568092.1| flagellar hook protein [Yersinia pestis Z176003]
 gi|21959376|gb|AAM86064.1|AE013853_12 hook protein [Yersinia pestis KIM 10]
 gi|45436269|gb|AAS61825.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589293|emb|CAH20914.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953]
 gi|108776131|gb|ABG18650.1| flagellar hook protein FlgE [Yersinia pestis Nepal516]
 gi|108779086|gb|ABG13144.1| flagellar hook protein FlgE [Yersinia pestis Antiqua]
 gi|115347533|emb|CAL20442.1| flagellar hook protein FlgE [Yersinia pestis CO92]
 gi|145210306|gb|ABP39713.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F]
 gi|149292664|gb|EDM42738.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125]
 gi|152962153|gb|ABS49614.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758]
 gi|162354451|gb|ABX88399.1| flagellar hook protein FlgE [Yersinia pestis Angola]
 gi|165913307|gb|EDR31929.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922196|gb|EDR39373.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990279|gb|EDR42580.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208051|gb|EDR52531.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962078|gb|EDR58099.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049434|gb|EDR60842.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055147|gb|EDR64944.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169751181|gb|ACA68699.1| flagellar basal body FlaE domain protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186698140|gb|ACC88769.1| flagellar basal body FlaE domain protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680312|gb|EEO76411.1| flagellar hook protein FlgE [Yersinia pestis Nepal516]
 gi|229688944|gb|EEO81009.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693514|gb|EEO83563.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701165|gb|EEO89194.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A]
 gi|262361784|gb|ACY58505.1| flagellar hook protein [Yersinia pestis D106004]
 gi|262366080|gb|ACY62637.1| flagellar hook protein [Yersinia pestis D182038]
 gi|270335149|gb|EFA45926.1| flagellar hook protein FlgE [Yersinia pestis KIM D27]
 gi|294354489|gb|ADE64830.1| flagellar hook protein [Yersinia pestis Z176003]
 gi|320015467|gb|ADV99038.1| flagellar hook protein FlgE [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 428

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 108/476 (22%), Gaps = 53/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGMNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +        N+    
Sbjct: 62  NDGTATTTNRRLDLAISQNGFFRMQD------SSGGIYYARNGQFKLDENRNIVNMQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    +      +      +      T 
Sbjct: 116 LTGYPA-------------------------TGTPPTVQQGANPVPLSIPQDMISAKATT 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +   +     DV+ +  S           +N       +  T F+++           
Sbjct: 151 SGNMVANLTSTHDVIAEATSP-------FDPDNPDTYSFVNNMTTFDSLGNRHEINVFYV 203

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                 ++    D             +     +    D   P    +   M     G+  
Sbjct: 204 KRAEDATDGNTWD----------VYTRDSSAKVTDPADPTDPAAAAKRGSMVFDSNGALK 253

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                   +      F                        Q     S +    +      
Sbjct: 254 NVTNGTNATSTTDFTFTIPMGVVNGAPAQSFALNVAGSKQQNTGADSIVAQNQTGYAAGE 313

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +   +    L     N   W E   S +  L 
Sbjct: 314 FTGFQINSDGSVVGTYSNQQTQLLGQIVMVNFSNPEGLSSEGDNV--WKETQSSGNPTLG 371

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 372 TAGSGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVSL 427


>gi|34556699|ref|NP_906514.1| flagellar hook-associated protein FlgK [Wolinella succinogenes DSM
           1740]
 gi|34482413|emb|CAE09414.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 [Wolinella succinogenes]
          Length = 609

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/467 (13%), Positives = 133/467 (28%), Gaps = 55/467 (11%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
           S+ +  N A           +    NI NA N+ Y R+    T             + V 
Sbjct: 3   SIFSSLNLAYTGLQTHQVMVSVTGNNIANASNEFYSRQRVDATAKDPLKLSNYSLGQGVE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             T    +           ++   Q     S           +         +    DS 
Sbjct: 63  ASTIVRIHDEYVYSRYKKAATEEQQTASQYSVLREASSYF-PEMDGIGLYKTLQTYFDSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            S ++   +      +  N E +      +   + +++   ++E+++ +  +     ++ 
Sbjct: 122 TSLAQKSGDPAQKLVLAQNTETLANTIQETRARLVQLQKTTNEELKVTVDEVNSLAKQIA 181

Query: 172 VVNDAIK--FKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--------------RNNN 215
            +N  I+      S   A+D  D+RD L   +S++IG +                   N 
Sbjct: 182 EINKQIQTYEAEHSNKKANDLRDKRDELEFNLSKLIGGTAFKTGISSYSKVDTEIADFNE 241

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +  + G TL + V         NS +        +      S +    + +GK+ AL
Sbjct: 242 TYNLTVAGGYTLVDGVTFHPL-VIDNSTSAEGIYTISYQGQDFKSVDITRDLTEGKVGAL 300

Query: 276 LQI-----------RDSVVPIFQNQLDEMARVLIGSFSEKDP---------------IAG 309
           L             +   +  + N LD  A+ LI S +                    + 
Sbjct: 301 LDTCLGNPGESCMGKIGKIQQYINDLDTFAQGLIESTNNIYAESSQLSLTSDKLTLLTSD 360

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +         +     +             V     +    + +  + +     +   + 
Sbjct: 361 SVVGSGYNITSGSFDIVMYDNTGKEMGRKSVKVDALTTMQDIVNQLNANTDDNGDGNAIN 420

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNR 415
            + D      ++  K F   P    +   ++  +   N  G L  NR
Sbjct: 421 DFDDNFYATYNNETKTFQILPKNPSDGIYISYQDNGTNFAGALGINR 467



 Score = 90.5 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 8/272 (2%)

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
             +Y         +    +        +  + ++  F   +  ++ +       K+ AL 
Sbjct: 338 NNIYAESSQLSLTSDKLTLLTSDSVVGSGYNITSGSFDIVMYDNTGKEMGRKSVKVDALT 397

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN--------VPGLFIADGIKDLDN 328
            ++D V  +  N  D      I  F +      N+E          P   I    +D   
Sbjct: 398 TMQDIVNQLNANTDDNGDGNAINDFDDNFYATYNNETKTFQILPKNPSDGIYISYQDNGT 457

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +      +     N +                + + G   + N           F
Sbjct: 458 NFAGALGINRFFDGNSAQNINLAMRYRDDPTLIRGYREAVEGNIVVANKMQQLQYNKVNF 517

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
               G   N TL ++ +     +  + +D+   +   + V   + + Y +   V+  EEL
Sbjct: 518 FDYNGNQYNETLADFFKLVTTKIATDTADAKTSNEIKKAVLTSVKQEYVSISEVSTDEEL 577

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + LI+ +  Y  + K++   DKML TLL   +
Sbjct: 578 TNLIRFQGGYTANAKVVATLDKMLDTLLGIKQ 609


>gi|288574709|ref|ZP_06393066.1| flagellar hook-associated protein FlgK [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570450|gb|EFC92007.1| flagellar hook-associated protein FlgK [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 856

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/461 (12%), Positives = 129/461 (27%), Gaps = 43/461 (9%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46
              F   +   +   Q F +   NI NAD + Y R+    + +                 
Sbjct: 5   FFGFEMGRRALSYFRQGFETSGHNISNADVEGYSRQRVEASSTDPFTEPGLNRPALPGQI 64

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V V           D      S+  G   ++       E    ++    S    +  
Sbjct: 65  GTGVKVDAIVRLRDQFLDLQYREESTVKGYWDIMTQGLDTLET-FVNEPNGESVRVGLDD 123

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              +L+  SKN       + +I  A  +    ++ +R  ++ R   ++++ L ++    +
Sbjct: 124 FWAALQEASKNADSSSARENLISKAGTLGTYLDSLSRNYEEYRTGLNEQVSLAVNEANTY 183

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN---DMVVYTSD 223
           + +++ +N  I+    +  + +D  D+RD+L +K+  +I       ++    +  +Y   
Sbjct: 184 IDQISALNLTIREVEGTGGNPNDLYDRRDLLAEKLCSLIDCEVSAPSDMEDGEYKIYLGG 243

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              +     R +  +   S    S    + ++         + V    I           
Sbjct: 244 RILVQGDKARHLELK---SVPGNSGFYDVQVEDNTFDHVSDTDVLTASIG---------- 290

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                 +  +A   + S +      G      G          D      I  TI +   
Sbjct: 291 QKASEAIHSVAVERLASETTWKVGGGTINGAVGRL-----PVSDPDEAMNIEGTIRLQVG 345

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                +      +     +                  S + N +      +   V+    
Sbjct: 346 SSGVRATGNQMNNEMGSPVLLKFPGGTDRTEYTFRIASQDLNSMPGNPEEMYVTVSWNSA 405

Query: 404 AR--NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                       + S    +    ++  + +     N  GV
Sbjct: 406 TSEWEMSSRCGNSSSG--TVSAGGELSLDELQSFLQNDTGV 444



 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/449 (14%), Positives = 131/449 (29%), Gaps = 27/449 (6%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--SPT 101
             S   V+   + S ++      L   +   G+  +        + +      ++  S  
Sbjct: 417 NSSSGTVSAGGELSLDE--LQSFLQNDTGVGGRLEVYVESSGSVDRLVIKSGDDHLLSFN 474

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L         +     +     D    +    N +      +  D  + +   + 
Sbjct: 475 DMKGDLLSGTLGLENDAPVVTVEIDNDDTLRSIANKINGAYNNGDGMPDDPSEWLHASVK 534

Query: 162 NLRR---FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           +      +L   + V            DA D    R + L   +     +  +  + D +
Sbjct: 535 SDGGGDYYLVLESDVVGESSRINVMGSDAGDSYAARRLGLMGGTAAEYSTETLSTSTDAL 594

Query: 219 VYTSDGTTLFETV--------PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
           V   D   L                 ++  +   V S       D    +      V  G
Sbjct: 595 VMVDDDRYLSSFNEFRQARKISASDGYKASSMEDVASGIVLSLKDTGSSAIRVEHHVSGG 654

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           +I AL+++RD V+       D +A  LI   +                   G  D  +  
Sbjct: 655 EINALMEVRDDVILQHLESFDAIAYNLINEMNAVHYAG------------HGSGDYSDIT 702

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                    V      N S        S  F  +  +  G      +  ++     +   
Sbjct: 703 GTAFFSPTSVMSGASRNLSVNDQLVQASGLFAASADDGNGQSKGEGNGDNAIAMAQLKQA 762

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
                 + T  EY  + I  L      S  +      + + IS    + +GVN+ EE+  
Sbjct: 763 KVMAGDSATFNEYYEDFIARLGVESQRSQAMLSNQTTLVDQISSQRQSVMGVNIDEEMMQ 822

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +++ +QS+N  ++ +   D+ML  ++ G+
Sbjct: 823 IMQFQQSFNAISRYVTTLDEMLDRVINGM 851


>gi|167561212|ref|ZP_02354128.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis
           EO147]
          Length = 668

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 138/476 (28%), Gaps = 39/476 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI N+    Y     +   +          P+ V
Sbjct: 1   MS-NTLMNLGISGLNAALWGITTTGQNISNSATPGYSVERPVYAEASGQYTSSGYLPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           T VT   +        L+A  +         S  A               +  I+     
Sbjct: 60  TTVTVERQYNQYLSNQLNAAQTQGSSLSTYYSLVAQLNNYVGSPTA--GISTAITNYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++    +T I NA+ +      + ++  ++R   + ++   ++ +  + +++
Sbjct: 118 LQTVANNAADPSARQTAISNAQTLASQLVAAGQQYSQLRQTVNSQLTDTVTQINSYTAQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   ++     +  LDQRD+ +  +S++ G+  +   N    V+ S G  L   
Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSNLSQLAGVQVVP-GNGSYSVFLSGGQPLVVG 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                 ++  G +  L+  R   +  
Sbjct: 237 NASYQLAAVASPSDPSELTIVSKGMAGANPPGDTQYLPDVSLTGGTLGGLIAFRRQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------- 338
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALAVSFASQVNAQNALGIDLSGNPGGNLFTVGSPTVYSNQGNTGGATLSVSIAD 356

Query: 339 -------CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                    +  +  +   L D  + S        +      +        +     D  
Sbjct: 357 GTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPASTPPTMTIGGLKLSLTSTPAAGDSF 416

Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVG 441
             + T   L  +A  +              + +        +    +S  Y    G
Sbjct: 417 TVLPTRGALDGFALATANGSAIAAASPVLAASAPTNSGTGAITQGAVSAGYQLPSG 472



 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 104/393 (26%), Gaps = 12/393 (3%)

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           + S T        +    + + ++  LG   +  A   V   N    ++          +
Sbjct: 275 DVSLTGGTLGGLIAFRRQTLDPAQAQLGALAVSFA-SQVNAQNALGIDLSGNPGGNLFTV 333

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                   +  +    ++ +I   T      +                  +       + 
Sbjct: 334 GSPTVYSNQGNTGGATLSVSIADGTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPAST 393

Query: 217 MVVYTSDGT--TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSA 266
               T  G   +L  T     +F  + +            +G  +++           ++
Sbjct: 394 PPTMTIGGLKLSLTSTPAAGDSFTVLPTRGALDGFALATANGSAIAAASPVLAASAPTNS 453

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
                 +  +     +           +   +  F     +         + I      +
Sbjct: 454 GTGAITQGAVSAGYQLPSGTTTLTYNASSKTLSGFPAGTTVTVAGPPQTSIDITSATTPV 513

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYCDSFNKN 385
                +G S TI    Q  S+P+ +            +      G     N   ++   +
Sbjct: 514 PYDPSKGASMTISSTTQPPSSPTVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALS 573

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            + +     N   TL       +  +    S           +   I+    +  GVN  
Sbjct: 574 QLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSTAQTALVGQITAQQQSVSGVNQN 633

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EE + L++ +Q Y  + K+I   D + +T+L  
Sbjct: 634 EEAANLMQYQQLYQANAKVIQTADSLFKTVLGL 666


>gi|167568430|ref|ZP_02361304.1| flagellar hook-associated protein FlgK [Burkholderia oklahomensis
           C6786]
          Length = 668

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 138/476 (28%), Gaps = 39/476 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI N+    Y     +   +          P+ V
Sbjct: 1   MS-NTLMNLGISGLNAALWGITTTGQNISNSATPGYSVERPVYAEASGQYTSSGYLPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           T VT   +        L+A  +         S  A               +  I+     
Sbjct: 60  TTVTVERQYNQYLSNQLNAAQTQGSSLSTYYSLVAQLNNYVGSPTA--GISTAITNYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++    +T I NA+ +      + ++  ++R   + ++   ++ +  + +++
Sbjct: 118 LQTVANNAADPSARQTAISNAQTLASQLVAAGQQYSQLRQTVNSQLTDTVTQINSYTAQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   ++     +  LDQRD+ +  +S++ G+  +   N    V+ S G  L   
Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSNLSQLAGVQVVP-GNGSYSVFLSGGQPLVVG 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                 ++  G +  L+  R   +  
Sbjct: 237 NASYQLAAVASPSDPSELTIVSKGMAGANPPGDTQYLPDVSLTGGTLGGLIAFRRQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------- 338
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALAVSFASQVNAQNALGIDLSGNPGGNLFTVGSPTVYSNQGNTGGATLSVSIAD 356

Query: 339 -------CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                    +  +  +   L D  + S        +      +        +     D  
Sbjct: 357 GTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPASTPPTMTIGGLKLSLTSTPAAGDSF 416

Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVG 441
             + T   L  +A  +              + +        +    +S  Y    G
Sbjct: 417 TVLPTRGALDGFALATANGSAIAAASPVLAASAPTNSGTGAITQGAVSAGYQLPSG 472



 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/393 (11%), Positives = 105/393 (26%), Gaps = 12/393 (3%)

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           + S T        +    + + ++  LG   +  A   V   N    ++          +
Sbjct: 275 DVSLTGGTLGGLIAFRRQTLDPAQAQLGALAVSFA-SQVNAQNALGIDLSGNPGGNLFTV 333

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                   +  +    ++ +I   T      +                  +       + 
Sbjct: 334 GSPTVYSNQGNTGGATLSVSIADGTQPPSSDYSLSFDGSKYTLTDRATGSVVGTATPAST 393

Query: 217 MVVYTSDGT--TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSA 266
               T  G   +L  T     +F  + +            +G  +++           ++
Sbjct: 394 PPTMTIGGLKLSLTSTPAAGDSFTVLPTRGALDGFALATANGSAIAAASPVLAASAPTNS 453

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
                 +  +     +           +   +  F     +         + I      +
Sbjct: 454 GTGAITQGAVSAGYQLPSGTTTLTYNASSKTLSGFPAGTTVTVAGPPQTSIDITSATTPV 513

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA-GYPDLINHYCDSFNKN 385
                +G S TI    Q  S+P+ + D          +      G     N   ++   +
Sbjct: 514 PYDPSKGASMTISSTTQPPSSPTVMNDVSVSLSGTPADGDQFTIGANKGTNDGRNALALS 573

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            + +     N   TL       +  +    S           +   I+    +  GVN  
Sbjct: 574 QLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSTAQTALVGQITAQQQSVSGVNQN 633

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EE + L++ +Q Y  + K+I   D + +T+L  
Sbjct: 634 EEAANLMQYQQLYQANAKVIQTADSLFKTVLGL 666


>gi|330975976|gb|EGH76042.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 442

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/479 (11%), Positives = 100/479 (20%), Gaps = 45/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN        A++       NI N     +                  +          
Sbjct: 2   SFNIGLCGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     S   G    L       +      +                E Y  N S
Sbjct: 62  TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +                                       
Sbjct: 121 NMKLQGYNVDANGSVVTGALS------------------------------------DLR 144

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             AS  D        +      +  +         +         T  ++T       ++
Sbjct: 145 VNASNLDPKATSTITNSANLNSTTPLPTVATFDATDTKSYNNKYSTPTYDTQGNAHTLDQ 204

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
               T T+  +   +      S+  S  P           + V         + A +   
Sbjct: 205 YFVKTGTNTWSMYSLMDGRSISDPTSTAPDKNDLTFDSSGNLVTTAGAAVPTDSANIKFN 264

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +               G                 I   +    Q  S    L+   +   
Sbjct: 265 ADGTFAVNNWVPGVQVGTGTTATWAANGAAGAASIKLDMSSTTQTASVSGLLKQDQNGYA 324

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  N+    +L   Y +  ++      +        L +       W E   S   
Sbjct: 325 TGQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVP 382

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 383 VSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441


>gi|315635632|ref|ZP_07890895.1| flagellar hook-associated protein FlgK [Arcobacter butzleri JV22]
 gi|315479929|gb|EFU70599.1| flagellar hook-associated protein FlgK [Arcobacter butzleri JV22]
          Length = 636

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/453 (13%), Positives = 124/453 (27%), Gaps = 30/453 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52
           MSL   FN AQ   N +     ++  NI N D   Y +R T  +         +   V V
Sbjct: 1   MSLFGTFNVAQTGLNASRYGIETVSNNIANKDTDGYKKRVTDLSEIGQMGSSITGRGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                              +       L +     E + A +      +  I+    ++E
Sbjct: 61  DGVSRVTSQYLYDNYTKEYTKTSYYDKLTNMLGNVEKIFA-ETSTAGLSVDINNYFTAIE 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N +  I    +    + +V N       V++ ++    E++  +  +   L E+  
Sbjct: 120 QLRSNPNSQIYKSYLQSQGQALVDNLQRLYSSVEQQQSIEKVELKTNVKEVNSILKEIAD 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  +       +  +D LD+RD L  K+S+ + +     N  ++ +             
Sbjct: 180 INGKL---ENYTNSTNDLLDKRDALELKLSQYVNVDINRDNGYEIKI------------- 223

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++S T+  E    + D   V            + +L    D       +  D 
Sbjct: 224 --GGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNEDGTAKAAYDANDV 281

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +   L    ++ +               D      +       + +     ++ N     
Sbjct: 282 IKYTL---NNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVTMDNLTRALAFKINNDPKL 338

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +    +N   +    D      DS     +    AG +   T             
Sbjct: 339 SQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKSNEFTGSISIVRYDATNA 398

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
               ++   +                   VNL 
Sbjct: 399 VQEREALYKNESQSTTAESDVVLKILEQNVNLS 431



 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/438 (13%), Positives = 142/438 (32%), Gaps = 21/438 (4%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V V   R     +    + A SS    + L  S++  K++   +   +N       K  +
Sbjct: 209 VNVDINRDNGYEIKIGGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNE 268

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
              + +   + D++  T+ ++    V                +  +    ++      + 
Sbjct: 269 DGTAKAAYDANDVIKYTLNNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVTMDNLTRAL 328

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----IVRNNNDMVVYTSDGT 225
              +N+  K          D+ D   V       +   S     +  N        +   
Sbjct: 329 AFKINNDPKLSQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKSNEFTGSI 388

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ-----IRD 280
           ++      +   E+   Y   S+S     D V+    Q   +  G IKA ++       +
Sbjct: 389 SIVRYDATNAVQEREALYKNESQSTTAESDVVLKILEQNVNLSSGSIKAQVENLSSSSPN 448

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           + +  + + LD +A  L   + +   +            +D I   +       +    +
Sbjct: 449 NKIQSYLDNLDSLAATLSDIYDQYIQVG----------ESDYIYGQNAANDYNGTPKGEI 498

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                 + + ++             ++   Y   I    D        D  A      +L
Sbjct: 499 VSVGLFSGTSVKTLAFNKNAVNDLKQDQIEYLATIQWKTDLSFDGKAQDSTAE--NVTSL 556

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            E+ RN+   +  +  ++         +   I  +Y+N V V+  +E+  L+K++ +Y+ 
Sbjct: 557 SEFFRNTKVNVSSDTENAKYSKEVQANIAQTIGTTYNNIVKVDEDDEMVNLMKLQAAYSA 616

Query: 461 SNKLIMFTDKMLQTLLEG 478
           + ++I   D+M++ +L  
Sbjct: 617 NAQMITAVDEMIKVILGL 634


>gi|304316900|ref|YP_003852045.1| fagellar hook-basal body protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778402|gb|ADL68961.1| fagellar hook-basal body protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 420

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/491 (8%), Positives = 110/491 (22%), Gaps = 84/491 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52
           +L     A +       +   I  NI N +   +                   +P+    
Sbjct: 1   MLRSMYSAVSGLKAHQAEMDVIGNNIANVNTVGFKASRMTFKEIFNQTIKGASAPQGSGG 60

Query: 53  VTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T   +      +        +    +                 ++   +          
Sbjct: 61  GTNPQQVGLGVAIASIDTLFTNGGSQRTDNPTDLSIDGNGFFIVNNGGANLYTRAGNFSF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                        +                  +++ + +  D      + I N       
Sbjct: 121 DSNGDLVTPDGYKVMGW--------------ISQDGKTVNTDTGNLSPISIKNWSSTSPA 166

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            T +                 LD    +   +S  + I      ++   +  +       
Sbjct: 167 STKL-----------IQLGGNLDAGTSIGSSVSYNVTIYDSQGGSHVATIQFTKKDNAGN 215

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                 NF+  +          I  D   + +N   ++    + +L              
Sbjct: 216 WDAAITNFDGNDLSASPVTIGSIQFDSNGLITNPAGSIFSVNVSSLP------------- 262

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                                              +        I+  +     Y S+  
Sbjct: 263 -------------------------------ITNTNATLGDGTNITIDLSNLTMYSSSTD 291

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                   ++       N+  Y  +   Y +   +      +A       L +       
Sbjct: 292 IRELSKDGNEAGSIESINIDQYGVVSGIYSNGRTQVIGQIALADFQNTQGLEKVGNTM-- 349

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++    S    +   +      I+        V+L  E + +I  ++ +  ++K+I  +D
Sbjct: 350 FINTVNSGDPMIGAANTGTRGTINPGTLEMSNVDLANEFANMITTQRGFEANSKVITTSD 409

Query: 470 KMLQTLLEGVK 480
           ++LQ L+   +
Sbjct: 410 EILQDLVNLKR 420


>gi|163856441|ref|YP_001630739.1| flagellar hook-associated protein FlgK [Bordetella petrii DSM
           12804]
 gi|163260169|emb|CAP42471.1| flagellar hook-associated protein 1 [Bordetella petrii]
          Length = 549

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/547 (8%), Positives = 125/547 (22%), Gaps = 73/547 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            ++N A    N +         NI NA N  Y R+  +T+ +             V V T
Sbjct: 2   NLYNLALTGLNASQAGMEVTSHNINNAANAGYSRQRLVTSTAGATETGQGFFGRGVQVDT 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--------------------------- 87
            + +  +   + +        Q        +                             
Sbjct: 62  VKRQYDSFLYRQMVGAQGTGAQLATHYDQVSQINNLFGDRTVGITPALENFFASLNAGAS 121

Query: 88  ---------EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG-KTVIDNAEEVVQN 137
                    +++   +           +L++  E  +  +S  +    + ++   ++ + 
Sbjct: 122 NPADPAVRQDILGKTNSLVTQINTAYRELQNLREGVNTQISTTVEQVNSYLERINDLNKQ 181

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA---------- 187
              +  +      D   + +  +S L + +             T                
Sbjct: 182 IVVAQGKSGHAPNDLLDQRDQALSELNQLVGVRYYEQGNSLNITLQSGQTLLSGTTVYPL 241

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP--RDINFEKMNSYTV 245
                  D     ++  +   +      ++      G  L   +           +    
Sbjct: 242 AAVQSASDPTRMALAYSLPAGSGSTVQVELSDSEISGGKLAGFLQFRSQSLDAVQDQLGQ 301

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ---------IRDSVVPIFQNQLDEMARV 296
            +    +  +    +    +  P   +  L Q           D  +         +   
Sbjct: 302 LAIGLALAFNAQHEAGLDLNGDPGEALFGLSQPAAIPKVGNTGDGSLTAEFTDASAIHAT 361

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                          ++   +       D    +                +   L+    
Sbjct: 362 SYDIVYNGTQYVVTRQSDGAVQTLTPSADTPPTIEFDGMTVTVDGTPAAGDVWKLQATRD 421

Query: 357 VSKKFLWNVKNLA-----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            ++     + + A            +  +      +          ++L       I  +
Sbjct: 422 AARDLKALITDPAKLALADAAGGTTNGANGLLLAKLQTEKVLGGGTLSLSGQFSQLINNI 481

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                           +    + +Y +  GVNL EE   L   ++ Y  S K++     +
Sbjct: 482 GVQTQQIKTAATAQDNLITQQTSAYLSVSGVNLNEEYVNLTIYQEQYQASAKILDVASTV 541

Query: 472 LQTLLEG 478
             TLL  
Sbjct: 542 FDTLLGL 548


>gi|37525841|ref|NP_929185.1| flagellar hook protein FlgE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785270|emb|CAE14211.1| Flagellar hook protein FlgE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 404

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 109/473 (23%), Gaps = 71/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI NA    +       +       V             
Sbjct: 2   AFSQAVSGLNAAAGNLDVIGNNIANAATYGFKSSTVAFSDIFAGSQVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +          + T  ++  +                +
Sbjct: 50  -------------LGVKVSGVNQNFKDGTPTTTNRTLDLAITQGGFFRMQGGDGGIYYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++               +++     E+    +          
Sbjct: 97  NGQFKMDENRNIINMQGMKLTG----------YPAASVNGGAPEIQKGANPEPITIPQGI 146

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                  +  +     S     +      N+         T F+++      +     T 
Sbjct: 147 LMAKATTKVTMTANLNSMHKKPTEAFSPENNDSYNYPTSVTTFDSLGNPHAIQVFFVKTN 206

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E      D  V  +   S                                     + D
Sbjct: 207 DNEWQVHAQDSAVEGAKAASLGT---------------------------------LKFD 233

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  +           +  N     I        +  ++ S             +  
Sbjct: 234 GNGKLIGDNNQFTFNVPSLNGSNAADITIDFNGSKQQKIDTD-SISAPKQDGYAAGEFKG 292

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +I  Y +  ++      +        L     N   W+E + S +  + +  
Sbjct: 293 YRIEQDGRVIGTYTNEQSQLLGQIVLTNFANPEGLAAKGDNV--WVETSASGNPVVGIAD 350

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +         V++ +EL  +I  +++Y  S + I   D++LQTL+  
Sbjct: 351 SGGFGKLLSGSLEASNVDMSQELVNMIVAQRNYQSSAQTIKTQDQILQTLVSM 403


>gi|242278491|ref|YP_002990620.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens
           DSM 2638]
 gi|242121385|gb|ACS79081.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens
           DSM 2638]
          Length = 704

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/397 (8%), Positives = 107/397 (26%), Gaps = 16/397 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            + ++ N        +    +    NI N + + Y RR                    V 
Sbjct: 3   GVNSLLNLGTGALFASQSAISVTGDNISNVNTEGYSRRKVRLEERVSINYNPGQLGTGVR 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                       +   +  ++   +   L S  +  E +  ++         ++K  +  
Sbjct: 63  AAEVYRNFDQFVENSYNDKATMRERWDTLYSTLSSVESLF-NESKGYGLNSSLTKFFNDW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  S+  ++    + ++ +   +V + ++   ++ + +   +  I+ +++     +  + 
Sbjct: 122 QDLSQRPNDAASRQQLLSDTTNLVNSLHSMQDDMTRYQQQVEDYIKQDVTKANDIMQRIA 181

Query: 172 VVNDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N  I        ++ +   D+R  L++++SEI+    I     ++ + T  G TL + 
Sbjct: 182 EINQRINVDQVEGQNNPNALYDERATLVRELSEIMDTKMIDNGKGNITITTGAGQTLVD- 240

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV---PKGKIKALLQIRDSVVPIFQ 287
             +  +       +  + +     DG    +                +      V     
Sbjct: 241 GDKHFSLSYDGPQSQNNLTPASNFDGKAYFAGSSEFEYTLECVTAGGMGTAEYRVSLDGG 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
               +     + +F+          +   ++   G                       + 
Sbjct: 301 TTWLKNDDGTVKTFTANAESGAIQVDDLQIWFGTGSDPSTAPATNMSVGDKFNIVPKSAL 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                     +     N         +          
Sbjct: 361 YWVENTSTRENITPQINFAGQDNTRRVTGGSLAGLFN 397



 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/408 (10%), Positives = 110/408 (26%), Gaps = 12/408 (2%)

Query: 80  LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---- 135
             ++    +        N                   + S        + +   +V    
Sbjct: 300 GTTWLKNDDGTVKTFTANAESGAIQVDDLQIWFGTGSDPSTAPATNMSVGDKFNIVPKSA 359

Query: 136 ---QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                  ++   +      A ++    ++            N   ++K       ++ + 
Sbjct: 360 LYWVENTSTRENITPQINFAGQDNTRRVTGGSLAGLFNFRDNAVGRYKERMDALTNELVW 419

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
           Q + +  + + +   +++           + G+        D      +     + S   
Sbjct: 420 QTNRIHSQGAGLKAHTSLEGTYAVNTDTAALGSGSSGLPFADRLQSGNSLMYFYNSSTGA 479

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                 +  +  +                 +   +  +D      + +      +   ++
Sbjct: 480 LESSGQIDFSSIAPPG----VQNFDPSVHSLEDVEAAIDASFGTYVDASIVNHKLHITAK 535

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK-FLWNVKNLAGY 371
           +     +      L   L      +         N     D   ++        +  +G 
Sbjct: 536 DGYNFQMGTDTSGLYAALGLNTYFSGSQASDIAVNGGVNGDIDFINAGHVNGAGEFNSGD 595

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
                        +          T  TL+EY   ++  +  +   +       + + + 
Sbjct: 596 NTNAIKMKQMGMTDLDITTAFDGTTKQTLIEYYDGTVAVVGADTGTAKFNKNFQETLASD 655

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++E   +  GVN+ EE+S LIK + SY  + KLI   D+MLQTLL   
Sbjct: 656 LNEKQQSVSGVNIDEEMSNLIKYQHSYTAAAKLITTADQMLQTLLGMK 703


>gi|149927798|ref|ZP_01916049.1| flagellar hook protein E [Limnobacter sp. MED105]
 gi|149823420|gb|EDM82651.1| flagellar hook protein E [Limnobacter sp. MED105]
          Length = 437

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/488 (10%), Positives = 124/488 (25%), Gaps = 66/488 (13%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
           S    F +  +  N A +    I  N+ NA    +   +   +            +    
Sbjct: 4   SAGGSFQQGLSGLNAAQRGLEVIANNVSNASVVGFKGSEAEFSDVFARAFNGARSTNGIG 63

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
              +  +  +N     ++   + +        F  ++          ++      +   +
Sbjct: 64  LGTSLAAVTQNFKQGNINVTGNPLDLAISGTGFFKVQ------AGNGDNIYTRNGQFTLN 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            E    N   D L    +D A       +  A+++   R           +         
Sbjct: 118 NEGVIVNSRGDKLQGFPVDAA---TGRPSDVAQDILVPRGSIPPAATRSANLELNL---- 170

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
                      A+  D     D  ++     S  + +   +   + M +Y     +   +
Sbjct: 171 --------DARATAIDPALAFDPANLNTFNNSTSMTVYDELGGAHIMAIYMRKEASNDWS 222

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           V   ++  +++  T                                          Q+  
Sbjct: 223 VFATVDGTQVDVGTAPVA--------------------------------VTTAPAQSTS 250

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +   + G  +  +      +    +  +              +  +    QY S+   
Sbjct: 251 ANLQYGVDGLLTTPNSGNLTVDMSRFVTASGVPFSSTGTAPNQFTFDMSNTTQYGSSFVV 310

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
              G    +   +   ++     L   Y +    N     +        L     N  GW
Sbjct: 311 QNLGQDGFESSPFAGFDVGADGMLTISYANGQLVNHAQIGLYRFPNPEGLQPVGSN--GW 368

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L  N S    + +     F  I         ++L  EL  +I  ++ Y  +++ I   D 
Sbjct: 369 LATNSSGPELVSLSEDTAFGIIQSGALEESNIDLTAELVAMISAQRVYQANSQTIKTQDS 428

Query: 471 MLQTLLEG 478
           + QT+   
Sbjct: 429 IFQTITNL 436


>gi|66046707|ref|YP_236548.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257414|gb|AAY38510.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078:Flagellar basal body FlaE [Pseudomonas syringae
           pv. syringae B728a]
          Length = 442

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/479 (11%), Positives = 101/479 (21%), Gaps = 45/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     S   G    L       +      +                E Y  N S
Sbjct: 62  TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +                                       
Sbjct: 121 NMKLQGYNVDANGAVVTGALS------------------------------------DLR 144

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             AS  +        +      +  +         +         T  ++T       ++
Sbjct: 145 VNASNLEPKATTTITNSANLNSTTALPTVATFDATDTNSYNVKYSTPTYDTQGNAHTLDQ 204

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
               T T+  +   +      S+  S  P             V         + A +   
Sbjct: 205 YFVKTGTNTWSMYSLMDGRSISDPTSTTPDKNNLTFDSSGKLVTTAGGAVPTDSANIKFN 264

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +               G   A             I   +    Q  S    L+   +   
Sbjct: 265 ADGTFAVTNWVPGVQVGTGTAATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYA 324

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  N+    +L   Y +  ++      +        L +       W E   S   
Sbjct: 325 TGQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVP 382

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 383 VSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441


>gi|330986468|gb|EGH84571.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 441

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/479 (10%), Positives = 105/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E Y  N  
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +                +L + +        T + +    
Sbjct: 121 GMKLQGYNVDANGSVVTGALS----------------DLRVDSSNLQPKATTPITNVANL 164

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            + +   +    D  D     +           N + +  Y                   
Sbjct: 165 NSTTALPSLTTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVK--------------TG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|118589967|ref|ZP_01547371.1| flagellar basal body FlaE [Stappia aggregata IAM 12614]
 gi|118437464|gb|EAV44101.1| flagellar basal body FlaE [Stappia aggregata IAM 12614]
          Length = 424

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/481 (8%), Positives = 105/481 (21%), Gaps = 58/481 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L  V     +  N  S +  ++  NI N+    Y R  +  +    +    +  S   
Sbjct: 1   MGLFGVMRSGVSGMNAQSSKLGTVAENIMNSSTTGYKRAKSEFSSLVVSQGAGSFNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-YNNSPTHYISKLRDSLESYSKNLS 119
               +        +                    +    S            + Y  N +
Sbjct: 61  EAHTQYEITKKGNLSFTTSKLDLAIDGNGFFVVGNEAGESFLTRAGHFVPDGDGYLLNTA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    I                +++I    ++      S               +  
Sbjct: 121 GYYLQGYPIT-GNTAPTTVANGLGGLERINITQNQLEATPTSEA----------FLRVNV 169

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +       L   +      S    +       N++ +              D     
Sbjct: 170 SEDAAIVPAADLPSANAATASYSHKTSMIVYDNLGNEVKLDVYYSKVTETGTDSDWEVTI 229

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N+          +    + +      V  G +        ++                 
Sbjct: 230 YNAADAAPGGGFPYTAPALNTQTLTFDVTTGNLTGASATSINIAVP-------------- 275

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                                                 +  +    ++ +        + 
Sbjct: 276 ------------------------------NGGTFDLDLDQSTYLNADFTVTNVDADGNA 305

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                    A    L   Y +   +     P+A + +   L   + N         S   
Sbjct: 306 PSAVKNVEFADDGTLFAVYANGDRRAIYKIPLANVPSPDRLSNRSGNVYST--SFDSGDV 363

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +    +     I         V+L  EL+ +I+ +++Y  ++++      +L+ L+  V
Sbjct: 364 RVGFAGEGGMGAIKVGGLEDSNVDLGNELTSMIESQRTYTANSQVFKAGSDLLEQLVNLV 423

Query: 480 K 480
           +
Sbjct: 424 R 424


>gi|330961196|gb|EGH61456.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 442

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/478 (11%), Positives = 107/478 (22%), Gaps = 43/478 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60
            FN   +    A++       NI N     +    T                 +  S   
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVM 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   +  S               +      +                E +  N + 
Sbjct: 62  TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSTG 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D   +VV                      L + +        + + ++    
Sbjct: 122 MKLQGYNVDANGDVVTGAL----------------GNLRVDSSNLEPKATSTITNSANLN 165

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +   +    D  D                         T   T  ++T       ++ 
Sbjct: 166 STTALPSVATFDATDT--------------------KSYNTKYSTPTYDTQGNAHTLDQY 205

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              T T+  +   +      S+  +  P           + V         + A V   +
Sbjct: 206 FVKTGTNTWSMYSLMDGRSISDPTTTTPDKNDLTFDSSGNLVTTAGGAVPTDSANVKFNA 265

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G                 I   +    Q  S    LR   +    
Sbjct: 266 DGTFSVNNWVPGVQVGTGTTATWAANGATGAASIKLDMSDITQTASVSGLLRQDQNGYAT 325

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  N+    +L   Y +  +K      +        L +       W E   S    
Sbjct: 326 GQLSAMNVDRTGNLFATYTNGQSKTIGQTSLTSFANVQGLAQ--AGGTNWRETFDSGVPV 383

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 384 SGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441


>gi|116248740|ref|YP_764581.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115253390|emb|CAK11778.1| putative flagellar hook protein flgE [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 430

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/481 (11%), Positives = 116/481 (24%), Gaps = 52/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  +  + + +++  NI NA+   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +     +  + +             +    N +
Sbjct: 61  QTSVRQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNGA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +       I    +     L+    V      
Sbjct: 121 GFTLMGYSYDSGVPAVVVNGFDGLVPVNVSQSGLSAIASSSAYFSGNLNSEATVVTNTTT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++   +     Q+  L+   S    +          V   + G     T    + +  
Sbjct: 181 LPSANTASVTDDTQKMSLVAYDSLGGTVQYDYYFTKTGVTTDASGAVTGSTWEVAV-YRN 239

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++ T ++ S P   D V V++    A  +        I D V              L  
Sbjct: 240 ADAATGSTTSFPYSSDAVSVATLSFDADGQLTSATDTDIVDPVTAKTVTMDYSDFTQLAS 299

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            FS                                                         
Sbjct: 300 DFSA------------------------------------------------TGSADGQA 311

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +   K     P+A + +   L   + N         S   
Sbjct: 312 ASAVSSVSIGADGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYS--ANGLSGVT 369

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I      +  V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429

Query: 480 K 480
           +
Sbjct: 430 R 430


>gi|254502675|ref|ZP_05114826.1| conserved domain protein [Labrenzia alexandrii DFL-11]
 gi|222438746|gb|EEE45425.1| conserved domain protein [Labrenzia alexandrii DFL-11]
          Length = 477

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/496 (9%), Positives = 128/496 (25%), Gaps = 35/496 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +    N A +  +  +    +I  N+ N+    + R DT  +              + 
Sbjct: 1   MGIYGAINSAVSGLSAQATALENISGNVANSQTVGFKRLDTTFSDLVSGGGSTQADQVSG 60

Query: 61  NMFDKVLHAHS---------SAIGQQRLLQSFEALKEM----MSADDHYNNSPTHYISKL 107
             +      ++                  + +  + +       +    +++        
Sbjct: 61  TTYATSRATNTIGGDISSNDVDTYMAINGEGYFVVTQAADFVDGSTTFADDTFYTRAGDF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + E Y  N S   L    +D A                I+ ++        + +    
Sbjct: 121 EVNKEGYFVNQSGYYLKGFPLDPATGNP-----VGDNPSVIQINSQPLAASSTTTVNYQA 175

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           S   V          +  +  +            +  IG +  +  +      +    T 
Sbjct: 176 SLPRVPATTNYDPNTANSELLNDGANGAPGPNLGATEIGDTGTLEADFLASSISGGSVTA 235

Query: 228 FETVPRDINFEKMN---SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           + +   ++           T  +E   +++D    +      V         Q+      
Sbjct: 236 YNSNGSEVPLNVRWAKVDNTAGAEVWSMYVDTGGEAGTSYYKVGDVTFDGTGQVSALANT 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                L            ++  + G +    G           N        ++      
Sbjct: 296 GATAALGVTTSGTTSFTLDEITVGGVTAGTAGNAADSITISFAN-------GSLTQFADP 348

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               + +    +           +     +I  Y ++  +     P+A      +L    
Sbjct: 349 DGIATSVNLSQNGYAAGELTNIAIDESGRVIASYSNNQTRALYEIPLATFQAEQSLRRV- 407

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
                      + + D           +  +       ++ +E S LI  +Q+Y+ ++++
Sbjct: 408 ------DGAAFAATSDSGDADLSGGGAVISNALELSNADIADEFSKLIITQQAYSANSRI 461

Query: 465 IMFTDKMLQTLLEGVK 480
           +   D+ML + L  V+
Sbjct: 462 VTSADEMLDSALNMVR 477


>gi|254251198|ref|ZP_04944516.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158]
 gi|124893807|gb|EAY67687.1| Flagellar hook-associated protein [Burkholderia dolosa AUO158]
          Length = 655

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/459 (13%), Positives = 140/459 (30%), Gaps = 24/459 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVFAEASGQYTSSGYLPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L+   S  G      S  A               +  I+     
Sbjct: 60  NTVTVQRQYSQYLSDQLNGAQSQGGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+  + +T I N + +    N + ++   +R   + ++   +S +  + +++
Sbjct: 118 LQNVANNASDPSVRQTAISNGQILADQLNAAGQQYDALRQSVNTQLTNTVSQINTYTAQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  IK  ++     +  +DQRD+ +  +S + G+  +  ++    V+ + G  L   
Sbjct: 178 AQLNQQIKAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNDDGY-SVFLAGGQPLVVA 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +S   +     S+            +   +++  G +  LL  R   +  
Sbjct: 237 DKSYQLATVTSSSDPSELTVVSQGIAGANPPGPNQTLPDASLSGGTLGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +    PG  +            +  +    V     
Sbjct: 297 AQAQLGAIAVSFAAQVNAQNGLGIDLAGQPGGSLF--TTPAPATYAKQGNTGNAVLAVSF 354

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           ++ +              N          +     +   +      +  + ++   +   
Sbjct: 355 ADATKPPTSDYTLSFDGTNYTLADRTSGAVIGTSTAMPGSIGGLNFSFSSGSMQPGDQFA 414

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                   +      L   S       S    +  G NL
Sbjct: 415 VLPTRGALSGFG---LATTSGSAIAAASPVVVSASGTNL 450



 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/421 (9%), Positives = 102/421 (24%), Gaps = 3/421 (0%)

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +K+     + + S       + Q               + S +        +  S + +
Sbjct: 236 ADKSYQLATVTSSSDPSELTVVSQGIAGANPPGPNQTLPDASLSGGTLGGLLAFRSQTLD 295

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            ++  LG   +  A +V            +                +       +     
Sbjct: 296 PAQAQLGAIAVSFAAQVNAQNGLGIDLAGQPGGSLFTTPAPATYAKQGNTGNAVLAVSFA 355

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                   D     D  +  L   +    I T       +       ++           
Sbjct: 356 DATKPPTSDYTLSFDGTNYTLADRTSGAVIGTSTAMPGSIGGLNFSFSSGSMQPGDQFAV 415

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                              +  +S    +     +     ++  V   +Q    ++    
Sbjct: 416 LPTRGALSGFGLATTSGSAIAAASPVVVSASGTNLGTGKIVQGGVTAGYQIPTTKLTYDA 475

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                   P                I +  + +    +    +      N   +   G+ 
Sbjct: 476 ATKTLSGFPAGTTVTIAGTPPTTVTISNPTDPVPYDPTAGAKMTMSGTMNGVTVTLSGTP 535

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S     +   +  Y    +   ++   + + +  +      TL     + +  +    S 
Sbjct: 536 S---NGDSFTIGPYAGGTSDGSNALALSQLVNAKSLGGGTTTLTGAYASYVNGVGNTASQ 592

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                     +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+L 
Sbjct: 593 LKSSSAAQTALVGQITTAQQSVSGVNQNEEAANLMQYQQYYQANAKVIQTAATLFQTVLG 652

Query: 478 G 478
            
Sbjct: 653 L 653


>gi|289679013|ref|ZP_06499903.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           syringae FF5]
          Length = 560

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 135/417 (32%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L + ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNGYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--SATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + +++     +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   ++K++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRKLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R+ V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQYNVQVAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + I +T         N +   
Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAA 413


>gi|330953732|gb|EGH53992.1| flagellar hook-associated protein FlgK [Pseudomonas syringae Cit 7]
          Length = 686

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/417 (12%), Positives = 135/417 (32%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L + ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--NATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + ++      +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLNTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   +++++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R+ V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   +    + I +T         N +   
Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSAEAITQRSIGKTTNSVGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTANDYEVTFSDSSNFTVRRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAA 413



 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 82/309 (26%), Gaps = 4/309 (1%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +    +    +      +      +S          +   +   T             
Sbjct: 378 RRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAAGDSFKVIPTRTGASGISVVLTDAK 437

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         SN           N  S +      A L+         +  +  ++
Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVS 497

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              + S++  +   G   +  G  +   I        +             S+ +F  + 
Sbjct: 498 STGVQSYTLINASGGAVLDQNGNAVGGSIIQGQANTIKLNVGYTDTTTTPSSSTAFQLEM 557

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYARNSIGW 410
                    +  ++       +   ++     +         N     +L     +++  
Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVVGLQTAKTVGVVNGGVGTSLSGSYADTVSV 617

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S S +    +  V +    S  +  GV+L EE S LIK +Q Y  S+++I     
Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677

Query: 471 MLQTLLEGV 479
           +  TL+  +
Sbjct: 678 IFSTLINSL 686


>gi|283956843|ref|ZP_06374316.1| putative flagellar hook-associated protein FlgK [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791569|gb|EFC30365.1| putative flagellar hook-associated protein FlgK [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 608

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 146/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESINNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYKDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N  + A
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNDHNA 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   +++ GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510



 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 128/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K+K        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYKDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     +             A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|330972421|gb|EGH72487.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 686

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/417 (11%), Positives = 133/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L + ++            +  + +          +  ++     ++
Sbjct: 62  SDVRRIYNSYLDTQLQSSTALSADAVAYSGQASKTDTLL--SDSATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + ++      +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLNTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   +++++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R+ V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + + +T         N +   
Sbjct: 297 TAMVLSDQVNSQMSQGIDSKGNFGSNLFSSINSADAITQRSVGKTTNSVGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAA 413



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 81/309 (26%), Gaps = 4/309 (1%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +    +    +      +      +S          +   +   T             
Sbjct: 378 RRLPNGESVGAGSLADNPPKQFDGFSVSLNGNTLAAGDSFKVIPTRTGASGISVVLTDAK 437

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         SN           N  S +      A L+         +  +  ++
Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVS 497

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              + S++  +   G   +  G  ++  I        +             S  +F    
Sbjct: 498 STGVQSYTLINASGGAVLDQNGNAVSGSIIQGQANTVKLNVGYTDTTTTPSSKTAFELQM 557

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYARNSIGW 410
                    +  ++       +   ++     +         N     +L     +++  
Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVVGLQTAKTVGVVNGGVGTSLSGSYADTVSV 617

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S S +    +  V +    S  +  GV+L EE S LIK +Q Y  S+++I     
Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677

Query: 471 MLQTLLEGV 479
           +  TL+  +
Sbjct: 678 IFSTLINSL 686


>gi|66046700|ref|YP_236541.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257407|gb|AAY38503.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078 [Pseudomonas syringae pv. syringae B728a]
          Length = 686

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 136/417 (32%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L + ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSD--SATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + +++     +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   +++++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R+ V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + I +T         N +   
Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAA 413



 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 77/309 (24%), Gaps = 4/309 (1%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +    +    +      +      +S          +   +   T             
Sbjct: 378 RRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGASGISVALTDAK 437

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         SN           N  S +      A L+         +  +  + 
Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVVNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVN 497

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              + S++      G   +  G  I   I        +             S  +F    
Sbjct: 498 SSGVQSYTVIKANGGAVLDQNGNAIGGSIIQGQANTVKLNVGYTDTTTTPNSKTAFELQM 557

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----GINTNVTLLEYARNSIGW 410
                    +  ++       +   ++     +               +L     +++  
Sbjct: 558 TISGSPVANDTFSIGLTGGGSSDNRNALAVVGLQTAKTVGVINGGVGTSLSGSYASTVSV 617

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S S +    +  V +    S  +  GV+L EE S LIK +Q Y  S+++I     
Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677

Query: 471 MLQTLLEGV 479
           +  TL+  +
Sbjct: 678 IFSTLINSL 686


>gi|330961205|gb|EGH61465.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 686

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 131/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYLGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L + ++               + + +D+         +      ++
Sbjct: 62  SDVRRIYNSYLDTQLQSSTALSADAVAYSGQAGKTDTLLSDNAS--GVAVQLGDFFSKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++     + +  A  +   FN+ A ++     + + ++      +    + +  
Sbjct: 120 GIATNATQASDRSSFLTQAGALSARFNSVASQLSSQNDNVNAQLTTFTKQVNELTNTVAG 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  LD R   +++++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASVGNSTPNTLLDSRSEAVRQLNELVGVKVVENNGNYDLYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R  V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQFNVQVAY---GQTQTDVTSVITGGSIGGLLRYRSEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + I +T         N +   
Sbjct: 297 TAMVLSDQVNSQLNQGIDSKGNFGSNLYSSINSADAITQRSIGKTANSLGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFSDTSNFTVRRLPNGESVGAGALSDNPPKQFDGFSVSLNGNTLAA 413



 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 80/309 (25%), Gaps = 4/309 (1%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +    +    A      +      +S          +   +   T             
Sbjct: 378 RRLPNGESVGAGALSDNPPKQFDGFSVSLNGNTLAAGDSFKVIPTRTGASGISVVMTDAK 437

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         SN           N  S +      A L+         +  +  ++
Sbjct: 438 DIAAAAPLTATAGASNAGTGSFTQPVLNTKSDIYSSTRTADLRNALKDSTPMKLVMGAVS 497

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              + S+S  +   G   +  G  +   I        +             S  +F  + 
Sbjct: 498 STGVQSYSLINASGGAVLDQNGNAVGGSIIQGQTNTLKLNVGYTDTTTTPGSKTAFQLEM 557

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP----VAGINTNVTLLEYARNSIGW 410
                  + +  ++       +   ++     +       VA      +L     + +  
Sbjct: 558 SISGSPVVNDTFSVGITGSGSSDNRNALAVVGLQTAKTVGVANGGAGTSLSGSYADLVSV 617

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S   +    +  V      S  +  GV+L EE S LIK +Q Y  S+++I     
Sbjct: 618 VGTLASQGKNDVTATAAVVGQAKASRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677

Query: 471 MLQTLLEGV 479
           +  TL+  +
Sbjct: 678 IFSTLINSL 686


>gi|86149406|ref|ZP_01067637.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88596766|ref|ZP_01100003.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218563069|ref|YP_002344848.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840188|gb|EAQ57446.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88191607|gb|EAQ95579.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360775|emb|CAL35574.1| putative flagellar hook-associated protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926674|gb|ADC29026.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927413|gb|EFV06751.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929004|gb|EFV08247.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 608

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 145/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNDNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   +++ GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510



 Score = 90.1 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 129/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     D+            A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       K   
Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYKKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|86360902|ref|YP_472789.1| flagellar hook protein FlgE [Rhizobium etli CFN 42]
 gi|86285004|gb|ABC94062.1| flagellar hook protein [Rhizobium etli CFN 42]
          Length = 430

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/481 (9%), Positives = 114/481 (23%), Gaps = 52/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  +  + + +++  NI NA+   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +     +  + +             +    N +
Sbjct: 61  QTSVRQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNSA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +       I    +     L+    V      
Sbjct: 121 GYTLMGYSYDSGVPAVVVNGFDGLVPVNVAQSGLSAIASTSAYFSGNLNSEATVVTDTTT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++         Q+  L+   S    +                           +  + 
Sbjct: 181 LPSANTSGVTDDTQKMSLVAYDSLGATVQYDY-----------------YFTKTGVTTDA 223

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T ++    ++ +    +    S                                  
Sbjct: 224 SGAVTGSTWEVAVYRNADAATGGTTSFPYSSS---------------------------- 255

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                     + +    L  A     +D    + I+       Q  S+ S          
Sbjct: 256 ---AVSVATLSFDADGQLTSATDTDIVDPVTAKTITMDYSDFTQLASDFSATGS-ADGQA 311

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +   K+    P+A + +   L   + N         S   
Sbjct: 312 ASAVSSVSIGTDGVVSVSYANGTTKSLYQIPLATVASPDNLTLLSGNVYT--ANGMSGVT 369

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I      +  V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429

Query: 480 K 480
           +
Sbjct: 430 R 430


>gi|77457733|ref|YP_347238.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens
           Pf0-1]
 gi|77381736|gb|ABA73249.1| putative flagellar hook-associated protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 681

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 138/402 (34%), Gaps = 15/402 (3%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ N   +    +S   A    NI N D   Y R+ T+                  T+  
Sbjct: 2   SLLNIGMSGLAASSSSLAVTGNNIANVDTAGYSRQQTVQGTKSSIQYGNVFIGTGTTLAD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R    +  +  L   +S   +     +     +   +    N   T  + K   S++  
Sbjct: 62  VRRVYNSYLESQLRTATSLNSEAAAFGAQATALD--GSLSDTNTGLTGVLQKFFTSMQGV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S + ++D   ++V+  A+ +   FN  A+++    A  +  +    S + +  + +  +N
Sbjct: 120 STSATDDTSRQSVLTGAQALTSRFNALAKQMNDQNATLNGNLSDMASQVNKLATSIATLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I   + S    +D LD R+  ++++SE+ G   + R  +   +Y   G  L      +
Sbjct: 180 QKIGEISTSGGQPNDLLDSRNEAVRQLSELTGAQVVERGTSF-DIYIGSGQPLVIGNTTN 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                      +     I +D    + +  SA+  G+I  LL  R  V+    N+L  +A
Sbjct: 239 TLSTVPLKGDPSR--MGIQMDRGSSTIDITSAMTGGEIGGLLTYRKEVLDPALNELGRVA 296

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
            V+    + +     +     G  I + I        + I+++         + +    G
Sbjct: 297 LVVADQINRQQAQGIDKNGDFGAAIFNNINSAALISQRSIAQSGNSAGSGNLDVTIKDTG 356

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
              +  +     +   Y    +   D  + +    P   I+ 
Sbjct: 357 KLTTSDYQVTFTSATNYTVKRSDGTDMGSFSTTTTPPPVIDG 398



 Score = 77.4 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 94/391 (24%), Gaps = 5/391 (1%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
            +   D  N      I K  D   +   N++   L                     ++  
Sbjct: 296 ALVVADQINRQQAQGIDKNGDFGAAIFNNINSAALISQRSIAQSGNSAGSGNLDVTIKDT 355

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
                 + ++  ++   +  + +   D   F T +            +    +S      
Sbjct: 356 GKLTTSDYQVTFTSATNYTVKRSDGTDMGSFSTTTTPPPVIDGFTLALNGGALSAGDTFK 415

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                N    + T             +      + + T     +     + +    + + 
Sbjct: 416 VTPTRNAASSIQTVLTDPKKIAAAGPLTGVASANNSGTYTQPTLTDVVDIYNPASQAELQ 475

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                AL       +             ++ +                            
Sbjct: 476 ----NALKYSTPVKLVFGATTSGSQTYNMVDAKGATIGSGVIVPGQANTLNLKIGMVDST 531

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 +  I    +  +  + +       + F  N+   A   +               
Sbjct: 532 GAPVMDTTVIPNVQKTFTVQTTVGATPKSGETFTINLTGAASSDNRNAQALVGLQTKQTV 591

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           D        ++L +     +  +    + S      + V+ +    +  +   VNL EE 
Sbjct: 592 DTGTASKG-ISLTDAYNKLVTNVGTQAAQSKSDSAATTVILDQAQGARDSLSQVNLDEET 650

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             L+K +Q Y  S+++I    +   TL+  +
Sbjct: 651 GNLVKYQQYYTASSQIIKAAQETFATLINSL 681


>gi|260597445|ref|YP_003210016.1| flagellar hook protein FlgE [Cronobacter turicensis z3032]
 gi|260216622|emb|CBA29917.1| Flagellar hook protein flgE [Cronobacter turicensis z3032]
          Length = 410

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 114/476 (23%), Gaps = 71/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   AFSQAVSGLNAASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D V       +        F  L +                 + +   +S   N+    
Sbjct: 62  GDGVTTNTGRKLDVAISQNGFFRLLD------SNGGVFYSRNGQFKLDEKSNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +           VQ                   I L I   +   S+ T  N  +   ++
Sbjct: 116 VTGYPATGTPPTVQQGAD--------------PIPLTIPTAQMPASQTTSANFVMNLNSS 161

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               A    D  +      S  + +   + N +++ +Y                    N 
Sbjct: 162 DDVPAQTPFDPANSSTFNKSVPLTVYDSLGNEHNLKLYYVK--------------TADNK 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           + V +    +            +    G +  +     +        +  +      SFS
Sbjct: 208 WDVYNMDTSVSSATPTTPLTSLTFSDSGALTGITNAAPAGSQQVPISVTSLNGSAAFSFS 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                   Q       L    +  K   
Sbjct: 268 MNLTGTT--------------------------------QQNSGANVLLTSNQNGYKPGD 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     L+ +Y +  ++      +A       L     N   W     S    L 
Sbjct: 296 LVGYQVNEDGSLVGNYSNEKSQLLGQIVLANFANPEGLSSQGDNV--WSASTASGVALLG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 354 SAGTGNFGKLTSGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 409


>gi|56460252|ref|YP_155533.1| flagellar hook protein FlgE [Idiomarina loihiensis L2TR]
 gi|56179262|gb|AAV81984.1| Flagellar hook protein FlgE [Idiomarina loihiensis L2TR]
          Length = 449

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/473 (10%), Positives = 119/473 (25%), Gaps = 26/473 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F  A +  N + +       NI N     + +                           
Sbjct: 2   SFKIALSGINASQKDLDVTANNISNVKTSGFKQSRAEFA---------------DVYATS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           + +A ++ +G   L  S           +   NS    IS       +      +    +
Sbjct: 47  IFNAGNTKVGDGVLTSSVAQQFSQ-GTLEFTENSLDMAISGNGFFATTDGLGSRDMTYTR 105

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           +      +     +     +Q  + D +      ++        +  V        A   
Sbjct: 106 SGAFKLNDDKFIVDNQGNYLQGYQVDRNSGTNSSVALATTQPIRIPDV--------AGAP 157

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            + D +     +  + S I G +            +S   T+++++              
Sbjct: 158 QSTDNVFTAFNVDARRSPIDGAANPFDPETPSTYQSSTSATVYDSLGESHTLSTYYVKRD 217

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            ++ +              +        A +     +   F    D        +F    
Sbjct: 218 NNQWDVYATFDGDEIDMTPTGTATASPDASVNGYAGLRVEFLGSGDPDVAAGQNTFDPGS 277

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +      ++ +G      +             Q+ S+          S       
Sbjct: 278 IDLSGNNVDGDPYLNNGADAQTIQFNFQDLTGTTTPTQFASDFEVTALDQDGSTVGRLTN 337

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +   +      +        L +       W E   S        +
Sbjct: 338 VDIDKSGLIAATYSNGDVQYLGQVAIVRFANEQGLTQIGG--TKWRESIDSGEPLSGEAN 395

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  I  S      VNL +EL  LI  ++++  +++ +   + + QT+L+ 
Sbjct: 396 TGTFGGIEASALENSNVNLTKELVDLITAQRNFQANSRSLEVNNTINQTILQI 448


>gi|239996708|ref|ZP_04717232.1| Flagellar hook-associated protein [Alteromonas macleodii ATCC
           27126]
          Length = 680

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/427 (13%), Positives = 139/427 (32%), Gaps = 14/427 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
           MS + +F+ A +  N +S+   +   NI N +   YVR  T    S    V +       
Sbjct: 1   MSSVDLFSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELQNSQVFGVEIGNTERII 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L    +++G+     S  A  + + A +   NS +  +S+   +L++ + + +
Sbjct: 61  NVFAQNQLRRDITSVGELEAFSSKTAAIDNLLASEA--NSISQGLSEYFAALQTAADDPT 118

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                  V+  +E + Q   T +  + +   + + E    ++     +  +  +N  I  
Sbjct: 119 NLASRDQVLGKSESLYQRMKTLSDYMLEKEEELNLEFTSMVNRANTLIGNIGDLNRNIVI 178

Query: 180 KTASKH--DAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLFETVPRDI 235
              +         L++RD  + +++ I+GI+       N  + +  + G +L        
Sbjct: 179 ANGNNTSDQPSALLNERDQAIDELASIMGITVKESTTQNGAVTINLTSGESLVLENGAFN 238

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGS-----AVPKGKIKALLQIRDSVVPIFQNQL 290
            FE   +  +T +   +  +    +    S         G +  L   R+ ++      +
Sbjct: 239 LFELNTNADLTFKQLKLETNFGSQTKADASIRIVEDDLGGALGGLFGYRNEILGPAMRDV 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            +++     + + ++ +  + +   G  I D              + +          + 
Sbjct: 299 GQLSVAFADAMNTQNKLGMDLDGQLGSNIFDIPSFRGLAYSDTNGDYVVTAQITEGKGAE 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           L D     +         +     I                  I +N  +        G 
Sbjct: 359 LTDADYKIEVTAVTAGVPSQI--EITLLNADGTPKKDASGNDIIYSNYAVTAGFNELPGG 416

Query: 411 LEKNRSD 417
           +E + S 
Sbjct: 417 IEVDFSG 423



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 104/365 (28%), Gaps = 23/365 (6%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + + D +    I   +           EV  + A    +IE+ + N      +    ND
Sbjct: 339 SDTNGDYVVTAQITEGKGAELTDADYKIEVTAVTAGVPSQIEITLLNADGTPKKDASGND 398

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I    A     ++       +    S     +             +   TL    P D+
Sbjct: 399 IIYSNYAVTAGFNELP---GGIEVDFSGTDPYTVGNEFLIQPTKDIASKITLETNRPEDL 455

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            F         + +        V  SN                                 
Sbjct: 456 AFASPVRAGANNTNLGSANVIDVTVSNTEVGASAFDGAG--------------------G 495

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
           +L  + ++ +  A ++ +V                   +     ++P    + S      
Sbjct: 496 LLNSAPAQINFTAADTYDVVDGSGNVLATVTGTTDLTNLISQAGISPDPGFDLSLDGVPK 555

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +     +    +         +     N+N         NT  T  +   + +G + ++ 
Sbjct: 556 AGDSFSISYNTDGFNDNSNALNLAAIQNENTAQVSSEATNTPRTFQDAYASMVGRIGEDA 615

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      ++ +       + +  GV+L EE + LIK +QSY  + +++    ++  T+
Sbjct: 616 SMAKVTLASAEAMKVQSQNWFESVSGVSLDEEAANLIKYQQSYAAAARILSTAQELFNTI 675

Query: 476 LEGVK 480
           L+  +
Sbjct: 676 LQSAR 680


>gi|30248322|ref|NP_840392.1| flagellar hook protein FlgE [Nitrosomonas europaea ATCC 19718]
 gi|30138208|emb|CAD84216.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718]
          Length = 410

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 106/473 (22%), Gaps = 64/473 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F    +    AS +      NI NA+   + +          N     +          
Sbjct: 2   GFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFADVYANALGGGRNQI------- 54

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                                                 ++ +       +   + + L  
Sbjct: 55  ---------------------------------GIGTQLAAVAQEFNQGNVTPTNNPLDV 81

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            +  N    + N  + +               +  SN              I     +  
Sbjct: 82  AITGNGFFRMDNNGSISFTRNGQFHLDKDGFLVNASNYNVTGFGADASGQIIPNIPVNLR 141

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +          S + G++   R +     +               N    ++YT 
Sbjct: 142 LPTADM----TPNPTTSFMTGVNLDARADVVTDPF---------------NVANPDTYTH 182

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           ++        G     N            +    D  V      L      +  SF+   
Sbjct: 183 STSGEIFDSFGNSHILNLYFQKTAASTWGVYTAVDGTVVDPSTGLSGTDSPITLSFN--- 239

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           P    +                          +  + Q+ S                   
Sbjct: 240 PSGIMTSTGSSTINVAASVLGAGVSPLAFELDLTRSTQFGSKFGVNVMSQDGFASGRLAG 299

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            +++    +   Y ++  +      +AG +    L     N   W E   S    +    
Sbjct: 300 YSISDDGQIRASYSNNVTRTVGQLVLAGFSNPNGLKPLGSNQ--WGETAESGLPLVGTPE 357

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             V   +  S      V+L  EL  LI  ++ Y  + K I   D ++QT++  
Sbjct: 358 TGVLGSLQSSAVEESNVDLTTELVTLIMTQRVYQANAKTIETQDAVMQTIMNI 410


>gi|300312833|ref|YP_003776925.1| flagellar hook protein [Herbaspirillum seropedicae SmR1]
 gi|300075618|gb|ADJ65017.1| flagellar hook protein [Herbaspirillum seropedicae SmR1]
          Length = 420

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/483 (10%), Positives = 119/483 (24%), Gaps = 75/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55
            F +  +  + AS+    I  N+ NA    + +       +  N             VT 
Sbjct: 2   SFQQGLSGLHGASKHLDVIGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVTV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            + ++      +   ++A+        F  +   ++              + + + + Y 
Sbjct: 62  ANVSQAFTQGNIATTNNALDVAINGDGFFRMAASLTDQSPR----YGRNGQFQLNKDGYL 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S +    T                        +    + L+I       +  T V+ 
Sbjct: 118 INPSMNGAYLTGYPAG------------------TNGGDPVPLKIDTATLPATATTRVST 159

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +   +          D  +      S    +   + N   +  +   G           
Sbjct: 160 KVNLDSRKSVPTVSPFDPANPNSYSNSTGATVYDSLGNPYSLQTFYVKG----------- 208

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 + T  S +  ++      +          ++   L+   +        +     
Sbjct: 209 ----AATGTPPSTTWSVYATLDGKTIINAPPATGPQLLGTLRFDATGALTASTGMSLNLS 264

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L                                    I+     + Q  S  + L    
Sbjct: 265 TLAK--------------------------GGATFPGPIALGYAGSTQTGSAFANLAQSQ 298

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     +I  Y +   +      +        L     N   +     
Sbjct: 299 DGMPPGTLSSFSIGKDGSIIGAYSNQQTRVMGQIVLVNFANPHGLQPIGNNL--YQASEA 356

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + S  +   +   F  +         V+L  EL  +I  ++ Y  +++ I   D +LQTL
Sbjct: 357 AGSALVGTPTTGAFGALQGRAVEQSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTL 416

Query: 476 LEG 478
           +  
Sbjct: 417 VSL 419


>gi|90577344|ref|ZP_01233155.1| flagellar hook protein [Vibrio angustum S14]
 gi|90440430|gb|EAS65610.1| flagellar hook protein [Vibrio angustum S14]
          Length = 408

 Score =  117 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/474 (10%), Positives = 115/474 (24%), Gaps = 67/474 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  +  + Q  +I  NI N     +    T  +     +              +
Sbjct: 2   SFDIALSGLDATNVQLNTISNNIANVSTSGFKESRTEFSAVYNGMQAGGVEVA---AISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S  G  R L    +        DH   +            ++   + +   L  
Sbjct: 59  NFDKTGSITGTGRPLDLAISGSGFFVTKDHTGQTLYTRSGVFNSDKDNNIVSNNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +                                 +    L    V N  I   +    
Sbjct: 119 YTV---------------------------------DANNNLQAGAVDNLKITTASLQAK 145

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              D     + L  + S I   +     N      +S  + +++++       +  S   
Sbjct: 146 ATDDLAFVAN-LDARSSVINPATNPFDPNATDSFNSSYTSKVYDSLGNPHTVTQYFSKRE 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             + N                              +      +    +        +E+ 
Sbjct: 205 EYDPNSP----------------------------NTTANRWDVNVVVDGDDANITTEEI 236

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +              +        I+  I    Q+ ++     +  +         
Sbjct: 237 IFNTDGTLQSPTAPFAVNFNPAGADAANINIDIAGTTQFGADFGVSTNAPNGYTSGELAG 296

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L++   N   W++   S +      S
Sbjct: 297 VRVEDNGMVFATYTNGQSQLQGQVMLADFANPQGLVK--TNGTSWIQSFSSGAPVNGAPS 354

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +         V+L  EL  L+  +++Y  + K I  +DK+ Q+L   V
Sbjct: 355 TGTLGGLVAGALEGSNVDLTSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 408


>gi|298487857|ref|ZP_07005897.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157582|gb|EFH98662.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 441

 Score =  117 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E Y  N  
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  R                ++NL    +  ++       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQSGTGTTASWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|313634367|gb|EFS00963.1| flagellar hook-associated protein FlgK [Listeria seeligeri FSL
           N1-067]
          Length = 479

 Score =  117 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 61/482 (12%), Positives = 133/482 (27%), Gaps = 36/482 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47
           M L   FN + +  + A        +NI N +   Y+R+                   + 
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQALYSDGGLLGGNKQTG 59

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V   +           +   +                 +      N  P+  +   
Sbjct: 60  YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +  + +KN  +      ++ +        N     ++++      + E  + +L   +
Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +L  +N AI    A  +  +D L+QRD +L  +S   GIS     NN  V   + G  L
Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236

Query: 228 FETVPRDINFEKMNSYTV----TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                         + +              +G + +S + +       +A ++   + +
Sbjct: 237 VVQGDETTEITSTRTASGFEFSVGGQTLHMPEGSISASVRVNQNEIKSYQAKIETFSNGL 296

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               + +       I    +K   A  +       +++  + L                 
Sbjct: 297 AKALDDIQVKNVNKIMDDLQKIGDALQANPNDEKLLSNREELLRQLEKFPGVTRSGDTID 356

Query: 344 YRSNPSFLRDGGSVS---------------KKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                  +   G+ +                   W +            +      +   
Sbjct: 357 IGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWTINPAISNNAENKQFLGVIAADIAS 416

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                     T   +    I  +  + S S           + +SES S+  GVN+ EE+
Sbjct: 417 LKTDKNIEGTTFPNFMDGIITEVATDASKSSATSTADTQALSSLSESKSSLEGVNIDEEM 476

Query: 449 SF 450
           + 
Sbjct: 477 TN 478


>gi|330943214|gb|EGH45621.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 686

 Score =  117 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 135/417 (32%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L + ++            +  + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNGYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--SATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + +++     +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   ++K++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRKLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R+ V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQYNVQVAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + I +T         N +   
Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAA 413



 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 77/309 (24%), Gaps = 4/309 (1%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +    +    +      +      +S          +   +   T             
Sbjct: 378 RRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGAAGISVALTDAK 437

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         SN           N  S +      A L+         +  +    
Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSDIYDSTQTADLRNALKSSTPMKLVMGAAN 497

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              + S++  +   G   +  G  +   I        +             S  +F    
Sbjct: 498 SSGVQSYTLINASGGAVLDQNGNAVGGSIIQGQANTVKLNVGYTDTTTTPSSKTAFELQM 557

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----GINTNVTLLEYARNSIGW 410
                    +  ++       +   ++     +               +L     +++  
Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVAGLQTAKTVGVINGGVGTSLSGAYASTVSV 617

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S S +    +  V +    S  +  GV+L EE S LIK +Q Y  S+++I     
Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677

Query: 471 MLQTLLEGV 479
           +  TL+  +
Sbjct: 678 IFSTLINSL 686


>gi|32490790|ref|NP_871044.1| hypothetical protein WGLp041 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165996|dbj|BAC24187.1| flgE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 410

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 124/474 (26%), Gaps = 65/474 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  N  N+A+Q    I  NI N+    +       +       V             
Sbjct: 2   SFIQGINGINSAAQALDVIGNNIANSQTIGFKSSYVSFSDIFSGSMVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  ++      S    ++   +     S +  +    +
Sbjct: 50  -------------LGSQLSNVTQNFASGSMVTGSKNLDMAISGNGFFRLSDSGGKIYFTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                     Q  N   + +   +A  +       S++   +   T +N      +    
Sbjct: 97  NGEFKLNSHRQIVNLQNKFLTGYQARGNPPSIDSGSSIENIIIPSTSMNP---VVSTEGE 153

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +     DV    I  I    +           +     + +        +       
Sbjct: 154 IHGNLKSDVDVPKNSIFNIKNPKSYNFTTQLEAYDSLGKKHVIKIFFVKQEAQGNWMVHG 213

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             E++PI  D   + +N                                       S  +
Sbjct: 214 YDETSPIVDDSKNIKTNPIL-----------------------------------ISFDE 238

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                       +I+     LD      +   +    QY S+        +      +N 
Sbjct: 239 NGNLKKSENSNKYISIDGSSLDGSDPLKVEINLEEMTQYSSDNQINYQKINGHGVGKFND 298

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            N++    +I +Y +   +      +A    N+ L     N   WLE   S    + +  
Sbjct: 299 YNVSDSGKIIANYSNGQTQLIAQIAMANFTNNLGLTPNGENC--WLESAESGPAIIGLSE 356

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              F  IS     +  V++  EL  ++  + +Y  + + I   D++LQ L+   
Sbjct: 357 TGSFGRISGQKLESSNVDISNELVKMMTQQSNYQSNAQTIKTQDQLLQILVNMK 410


>gi|241113584|ref|YP_002973419.1| protein of unknown function DUF1078 domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240861792|gb|ACS59458.1| protein of unknown function DUF1078 domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 430

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/481 (11%), Positives = 116/481 (24%), Gaps = 52/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  +  + + +++  NI NA+   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +     +  + +             +    N +
Sbjct: 61  QTSVRQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNGA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +       +    +     L+    V      
Sbjct: 121 GFTLMGYSYDSGVPAVVVNGFDGLVPVNVSQSGLSAVASSSAYFSGNLNSEATVVTDTTT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++   +     Q+  L+   S    +          V   + G     T    + +  
Sbjct: 181 LPSANTASVTDDTQKMSLVAYDSLGGTVQYDYYFTKTGVTTDASGAVTGSTWEVAV-YRN 239

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++ T ++ S P   D V V++    A  +        I D V              L  
Sbjct: 240 ADASTGSTTSFPYSSDAVSVATLSFDADGQLTSATDTDIVDPVTAKTITMDYSDFTQLSS 299

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            FS                                                         
Sbjct: 300 DFSA------------------------------------------------TGSADGQA 311

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +   K     P+A + +   L   + N         S   
Sbjct: 312 ASAVSSVSIGTDGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYS--ANGLSGVT 369

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I      +  V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429

Query: 480 K 480
           +
Sbjct: 430 R 430


>gi|289627763|ref|ZP_06460717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651647|ref|ZP_06482990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330866422|gb|EGH01131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 441

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E Y  N  
Sbjct: 62  TAAVSQQFTQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  R                ++NL    +  ++       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|148980302|ref|ZP_01815989.1| flagellar hook protein E [Vibrionales bacterium SWAT-3]
 gi|145961321|gb|EDK26631.1| flagellar hook protein E [Vibrionales bacterium SWAT-3]
          Length = 408

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/474 (11%), Positives = 120/474 (25%), Gaps = 67/474 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  N ++ +  +I  NI N     +    T                       +
Sbjct: 2   SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSEAGGVEVVG---VSQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 +  G  R L    +       +D    +          + +      S   L  
Sbjct: 59  NFEKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSGAALQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D                                     L  +  V  +     A + 
Sbjct: 119 YSVDGNN-------------------------------NLLLGSVGTVQISTASLQARET 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D+ +F+   D   Q  +     S     N+                         +S   
Sbjct: 148 DSIEFVANLDAREQVPASAFDYSDSSTYNH------------------SYTTPVYDSLGN 189

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +  F+ G     +    V    I     +  +  P   +                 
Sbjct: 190 PHTVSQYFVKGASNDWDVHILVDGKAIDGADALVPAASPTATDT-------------ANF 236

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +     G   +      +      ++  +    Q+ S+    ++  + S    +  
Sbjct: 237 TFNADGTISSGGNYSVSFDPANGANSVTVNIDLSAVTQFGSDFVVSKNSPNGSTSGDYAS 296

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A   +   +++   +   WL+   S +  L    
Sbjct: 297 VRMENDGRIFATYTNGQSQLQGQVVLADFASPQNMIK--TSDTAWLQSFSSGTPVLGTAG 354

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             VF  ++        V+L  EL  L+  +++Y  + K I  +D++ Q L   V
Sbjct: 355 SGVFGDLTSGALEGSNVDLTSELVALMTAQRNYQANTKSISTSDQLTQALFNVV 408


>gi|54297182|ref|YP_123551.1| flagellar hook protein FlgE [Legionella pneumophila str. Paris]
 gi|53750967|emb|CAH12378.1| Flagellar hook protein FlgE [Legionella pneumophila str. Paris]
          Length = 437

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/482 (10%), Positives = 126/482 (26%), Gaps = 58/482 (12%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQR 56
           FN A +    +++    I  NI N+    +            +             V   
Sbjct: 3   FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +++     L   ++ +        F  L +                 + + + E+Y  
Sbjct: 63  RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKVYTRAGQFKLNNENYIV 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +   L   + D+   +      ++ +++   A+        +S      S+    N  
Sbjct: 116 NANNQRLTGLLTDSNGAITG----ASGDLRINTANIPPRASSNVSVGVNLSSQSKAPNV- 170

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                                   +      +    N     +Y S G +   ++     
Sbjct: 171 ----------------------DWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                + +  + S     +   V+    +      + A            QN  +     
Sbjct: 209 DSTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                S       ++  +P   I       +      +S  +  + Q+ S  +      +
Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSNPLSLSIDLSDSTQFGSPFAVQSTFNN 316

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     ++     +   Y +  + +     +A      +L         W E   S
Sbjct: 317 GYTTGSLAGLDIDDSGVIYGRYTNGQSLSMGQIQLANFADPESLQNLGN--TNWAETTSS 374

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          I+        V+L  EL  LI  ++++  + + I   D + QT++
Sbjct: 375 GQPLISAPGSGGLGLINSGRLEESNVDLTSELVNLISAQRNFQANAQTIRTGDAITQTII 434

Query: 477 EG 478
             
Sbjct: 435 NI 436


>gi|86153170|ref|ZP_01071375.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85844055|gb|EAQ61265.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 608

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/514 (10%), Positives = 145/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKINGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNDNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   +++ GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510



 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 129/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSI--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKINGGQLGAQLDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     D+            A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+ LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LAALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|57505236|ref|ZP_00371165.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter
           upsaliensis RM3195]
 gi|57016372|gb|EAL53157.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter
           upsaliensis RM3195]
          Length = 608

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/514 (11%), Positives = 161/514 (31%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M + A  +        +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFATLHTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L   S+       L             D  N    + +     +
Sbjct: 61  AIESIVRLHDEHAYFKLKNASTQQEYTGYLGQVLEEISQRF-PDLKNKGILNNLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     +++  + + ++ N +   ++KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVNATKTLAESINEAHSTLKKIQQKVNDDIKSTVEEINRIGEEI 179

Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A   D A++  D+RD L   +S+++                 TI    +
Sbjct: 180 AHINKQIYGEEALPTDHANELRDRRDELELTLSKLVSAVASKNEIVQNNRFEQTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 HYNLSIEGFSIVDGVNFHPLKLD---YDDKNKSYSIYYQTPDEKIHDLTAKLKGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDP----------------- 306
           L +R            + ++  + + L+  ++ LI   +                     
Sbjct: 297 LDLRGRDYDKLEGAYDNGILQGYIDSLNTFSKTLITETNNLYAGSAKNSVTSDYLEGLTG 356

Query: 307 -IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +   + +         I   D K  + + ++I ++     N    +   +       N 
Sbjct: 357 DVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMNQIKANTDDNGNKNN 416

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL---EKNRSDSHDLH 422
           ++        +   DS + + +F   A     V+L +   N  G                
Sbjct: 417 QDDVDDFINASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSGKDASDI 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
              + + +  S   ++  GV+   +++  +I+++
Sbjct: 477 RVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQ 510



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 4/257 (1%)

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            G        R I     +      + N      + +           +IKA     D+ 
Sbjct: 355 TGDVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMNQIKANTD--DNG 412

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
               Q+ +D+          +    +G  +          ++D         S     + 
Sbjct: 413 NKNNQDDVDDFIN--ASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSG 470

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +  S+        S       +   +    D+ N           F    G    +T+ E
Sbjct: 471 KDASDIRVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQYDKVSFYNKDGTIDELTMEE 530

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           Y R   G +  +  +++ +H  +  ++N +   Y +  GVN  EEL+ LI+ + SY  + 
Sbjct: 531 YYRKFTGKIASDGENNNVIHKSNMTLYNSVYAEYQSKSGVNTNEELAALIQWQSSYGAAA 590

Query: 463 KLIMFTDKMLQTLLEGV 479
           K++   D+ML TLL   
Sbjct: 591 KIVSTVDQMLDTLLGLK 607


>gi|330889085|gb|EGH21746.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 441

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E Y  N  
Sbjct: 62  TAAVSQQFTQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  R                ++NL    +  ++       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISNPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|254461659|ref|ZP_05075075.1| FlgK flagellar hook-associated protein 1, putative [Rhodobacterales
           bacterium HTCC2083]
 gi|206678248|gb|EDZ42735.1| FlgK flagellar hook-associated protein 1, putative
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 1431

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 119/339 (35%), Gaps = 22/339 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT--------------MTTISPE 48
           + ++ +  ++  +   +      +NI NA+ + Y RR+               + + +  
Sbjct: 1   MASLLDIGRSAVSAQREALNVTGQNIVNANTEGYRRREASLTEVSDIKSELTSVMSQTGL 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V +   R    +   +     ++           + L+++       +      ++   
Sbjct: 61  GVKLGEIRRAYDSFLSESKRGATARFESSDAF--VKKLEQLEDTILPTDGDLGVTLTAFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DSL   +    +       I+    V  +FNT+A  +  +     +EIE+ ++   + + 
Sbjct: 119 DSLSEVAAQPGDRAPRALAIEVGHTVSNSFNTTAMMLNDLGEGTFQEIEMRLAEASQNIE 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  +N  ++      +  H  LD+RD  +  +S I+ ++  +   ND+ +    G+++ 
Sbjct: 179 VLGKLNAQLRSSNFGANPPHSLLDERDRFIDTLSGILPVNVTIGERNDVELRL--GSSVA 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V       K  S  +T +    F  G   S      +   +++ L+            
Sbjct: 237 GPVILTGADAKTLSAMMTDQGAVAFRIG---SGQIVPQLESAELRGLVDAF-ETTQRAIL 292

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           +LDE+AR      + +     + +   G  +    +   
Sbjct: 293 ELDELARNFSTQMNRQHAQGVDLDGDLGRELFSTAQFTP 331



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/373 (9%), Positives = 109/373 (29%), Gaps = 14/373 (3%)

Query: 110  SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            ++     +    +           +    + ++ + ++I A           +L     E
Sbjct: 1068 AVVGGQLSGQGPVAVADETAQQFGLGATQSKASLQGREILAGLADGEYQFDVDLNGIEHE 1127

Query: 170  LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            ++V  +   F       A   +  + V        + +S +      + V  S+      
Sbjct: 1128 VSVAVEDGTFAITLPQSAQGLISAQIVSTSSGQSALSLSVLQSQMGALSVSPSEAAQKLG 1187

Query: 230  TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                 ++    N       +  + +D V            G   A   +R + +P  +  
Sbjct: 1188 FKVGTVDLTVQNGILNARSTGGVAVDIVA----------GGVSSAESYVRLNDIPDEELI 1237

Query: 290  LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            +    +      +E +     S+   G                 + +            +
Sbjct: 1238 VVMGGQGAKRLAAEFETGPVMSDADRGSAQFRIEMIDAETGRVELFDLDSGASIATRTSN 1297

Query: 350  FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN----VTLLEYAR 405
             +       +   ++     G    +     +   +   D +A    N     +  +  R
Sbjct: 1298 GVTHFNVSGQNIEFSGFAETGDSFELATGQRAPGDSRNMDVLAAYGQNRAGITSFQDDFR 1357

Query: 406  NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
            N    +      +   ++ ++ V++    + S   GV + +E + L+  +Q+Y  + +++
Sbjct: 1358 NIASEVGATLEAARLTNLSNEAVYDAAVAAESELSGVKMDDEAAQLMSQQQAYQAAARIL 1417

Query: 466  MFTDKMLQTLLEG 478
                ++  T+L+ 
Sbjct: 1418 QTARELFDTILQI 1430


>gi|71736953|ref|YP_275563.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257484949|ref|ZP_05638990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|71557506|gb|AAZ36717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320325093|gb|EFW81162.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329352|gb|EFW85345.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|331011042|gb|EGH91098.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 441

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 103/479 (21%), Gaps = 46/479 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E Y  N  
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  R                ++NL    +  ++       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 382 VSGTPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440


>gi|323697478|ref|ZP_08109390.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. ND132]
 gi|323457410|gb|EGB13275.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans
           ND132]
          Length = 711

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 91/276 (32%), Gaps = 12/276 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ +  +     +  Q      NI N + + Y RR                    V   
Sbjct: 6   NSILDMGRWALFASQAQLQVTGENIANVNTEGYSRRSVNLEEGTYIDYSPGQLGTGVKAT 65

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                   M + +    SS       L       E +  ++  ++  +  +S+  +S   
Sbjct: 66  EVVRSFDEMVEAMYLQQSSLSNMWGNLFEQLQGVEDLL-NESSDSGVSDALSQYFNSWNE 124

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S+        +TV+++A  ++         +  ++   + E+  +++     + ++  +
Sbjct: 125 VSQRPDNYGARQTVVNDAATLITTLKAVETNLSLMQERINSEVASQVAEANSLMEDIADL 184

Query: 174 NDAIKFKTASK-HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           N  I+       ++A+   D+R   ++ ++E++ + TI     +  V T  G TL +   
Sbjct: 185 NKEIQIHDVPGQNNANALYDERARKVRALAELVDVKTIDNGGGNFTVLTQSGQTLVDGAS 244

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 +  + T     +  F   +    N      
Sbjct: 245 SFSLDFRSATKTTDLRPDSTFEGNIYFDGNDDYEYT 280



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/393 (12%), Positives = 110/393 (27%), Gaps = 10/393 (2%)

Query: 90  MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
            SA ++ +      +     S      + +   +       +      +  +    ++I 
Sbjct: 325 FSAREYDDRVNVEGLQIWFGSATDSQGSPTGTFVDGDRFIISPHQGLYWVQNTSHAEEIT 384

Query: 150 ADADKEIELEISNLRR---FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
                  E     L             N   K+++     +   + + +    + + +  
Sbjct: 385 PQLHFNGEENTERLTGGSIAALLSFRDNYVGKYRSKLDELSGTVIWETNRRHSQGAGLQA 444

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            +          +  + G+        D      +   + + S  +      +  +    
Sbjct: 445 FTVADGTYGVDYIDKALGSDSTGLAFGDKLQSGSSFMYIYNASTGLLASSAALDFDGSGG 504

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
               +I  L  +RD+    +   ++            +D              A    + 
Sbjct: 505 TFNPEIHTLEDVRDAFNRTYAGAINATIVNNKLRLEAEDGYTFAFGTDTAGLYAGLGLNT 564

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
             K     S  I        +          +       +   G              + 
Sbjct: 565 FFKGDDANSMAINEKITSDLD-------YLATGHVNGAGEMNTGDNTTALSMYALREVSV 617

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                    T+ T+L+Y    +G +  + + +       Q + N +++      GVNL E
Sbjct: 618 TTSTAFEGTTSQTILDYYNGIVGNVGTDTNRAQFNQNFYQTLANDLNDRQQEVSGVNLDE 677

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           E+S LI+ + SY  + KLI   D+MLQT+L   
Sbjct: 678 EMSDLIRYQASYTAAAKLITTADEMLQTILSLK 710


>gi|315639201|ref|ZP_07894363.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter
           upsaliensis JV21]
 gi|315480527|gb|EFU71169.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter
           upsaliensis JV21]
          Length = 608

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/514 (11%), Positives = 161/514 (31%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M + A  +        +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFATLHTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L   S+       L             D  N    + +     +
Sbjct: 61  AIESIVRLHDEHAYFKLKNASTQQEYTGYLGQVLEEISQRF-PDLKNTGILNNLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     +++  + + ++ N +   ++K++   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVNATKTLAESVNEAHSTLKKVQQKVNDDIKSTVEEINRIGEEI 179

Query: 171 TVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A   D A++  D+RD L   +S+++                 TI    +
Sbjct: 180 AHINKQIYGEEALPTDHANELRDRRDELELTLSKLVSAVASKNEIVQDNRFEQTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 HYNLSIEGFSIVDGVNFHPLKLD---YDDKNKSYSIYYQTPDEKIHDLTAKLKGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDP----------------- 306
           L +R            + ++  + + L+  ++ LI   +                     
Sbjct: 297 LDLRGRDYDKLEGAYDNGILQGYIDSLNTFSKTLITETNNLYAGSAKNSATSDYLEGLTG 356

Query: 307 -IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +   + +         I   D K  + + ++I ++     N    +   +       N 
Sbjct: 357 DVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMRQIKANTDDNGNKNN 416

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL---EKNRSDSHDLH 422
           ++        +   DS + + +F   A     V+L +   N  G                
Sbjct: 417 QDDVDDFINASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSGKDASDI 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
              + + +  S   ++  GV+   +++  +I+++
Sbjct: 477 RVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQ 510



 Score = 89.7 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 4/257 (1%)

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            G        R I     +      + N      + +           +IKA     D+ 
Sbjct: 355 TGDVPLMNYDRTIQAGTFDIVIYDEKGNEKVRKSITIDVTTTMNDLMRQIKANTD--DNG 412

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
               Q+ +D+          +    +G  +          ++D         S     + 
Sbjct: 413 NKNNQDDVDDFIN--ASFSFDSKSNSGLFQINAKNGFKVSLEDKGTNFAGAFSVGGFFSG 470

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +  S+        S       +   +    D+ N           F    G    +T+ E
Sbjct: 471 KDASDIRVKESLLSDPSTVRASKNGVDSGNDMANQIIQLQYDKVSFYNKDGTIDELTMEE 530

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           Y R   G +  +  +++ +H  +  ++N +   Y +  GVN  EEL+ LI+ + SY  + 
Sbjct: 531 YYRKFTGKIASDGENNNVIHKSNMTLYNSVYAEYQSKSGVNTNEELAALIQWQSSYGAAA 590

Query: 463 KLIMFTDKMLQTLLEGV 479
           K++   D+ML TLL   
Sbjct: 591 KIVSTVDQMLDTLLGLK 607


>gi|209547530|ref|YP_002279448.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209538774|gb|ACI58708.1| protein of unknown function DUF1078 domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 430

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/481 (11%), Positives = 116/481 (24%), Gaps = 52/481 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  +  + + +++  NI NA+   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I             +        + +             +    N +
Sbjct: 61  QTSVRQAISQQGDISYTTSDYDLAISGDGFFIVQSADGTPVLTRAGDFSVDSDGNLVNGA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +       +    +     L+    V      
Sbjct: 121 GFTLMGYSYDSGVPAVVVNGFDGLVPVNVSQSGLSAVASTSAYFSGNLNSEATVVTDTTT 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++   A     Q+  L+   S    +          V   S G     T    + +  
Sbjct: 181 LPSANTSAVTDDTQKMSLVAYDSLGGTVQYDYYFTKTSVTTDSAGAVTGSTWEVAV-YRN 239

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            ++ T  + S P   D V V++    A  +    A   I D V              L  
Sbjct: 240 ADATTGGTTSFPYSSDAVSVATLSFDADGQLTSAADTDIVDPVTAQTITMDYSDFTQLAS 299

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            FS                                                         
Sbjct: 300 DFSA------------------------------------------------TGSADGQA 311

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +   K     P+A + +   L   + N        +S   
Sbjct: 312 ASAVSSVSIGTDGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYS--ANGQSGVT 369

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       I      +  V+L  EL+ +I+ ++SY  ++K+      ++  L+   
Sbjct: 370 VTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLK 429

Query: 480 K 480
           +
Sbjct: 430 R 430


>gi|149191153|ref|ZP_01869411.1| flagellar hook protein E [Vibrio shilonii AK1]
 gi|148834991|gb|EDL51970.1| flagellar hook protein E [Vibrio shilonii AK1]
          Length = 408

 Score =  117 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/474 (11%), Positives = 124/474 (26%), Gaps = 67/474 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  N ++ +  +I  NI N     +    T                       +
Sbjct: 2   SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSEAGGVEVVG---VSQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 +  G  R L    +       +D    +          + +      S   L  
Sbjct: 59  NFEKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSGAALQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D                                     L  +  V  +     A + 
Sbjct: 119 YSVDGNN-------------------------------NLLLGSVGTVQISTASLQARET 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D+ +F+   D   Q  +     S     N+         T +++++       +      
Sbjct: 148 DSIEFVANLDAREQVPAAAFDYSDSSTYNHSYT------TPVYDSLGNPHTVSQYFVKGA 201

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           +++ N   +      +   + VP G                             + S   
Sbjct: 202 SNDWNVHVLVDGQAINAADALVPAGS-------------------------PTTTDSANF 236

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +     G   +      +      ++  +    Q+ S+    ++  +      +  
Sbjct: 237 TFNADGTIASGGNYSVSFDPANGANGVTVNIDLSSVTQFGSDFVVSKNSPNGYTSGDYAS 296

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L++   +   WL+   S +  L    
Sbjct: 297 VRMENDGRIFATYTNGQSQLQGQVVLADFAAPQNLIK--TSDTAWLQSFSSGTPVLGTAG 354

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             VF  ++        V+L  EL  L+  +++Y  + K I  +D++ Q L   V
Sbjct: 355 SGVFGDLTSGALEGSNVDLTSELVALMTAQRNYQANTKSISTSDQLTQALFNVV 408


>gi|330975982|gb|EGH76048.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 686

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 133/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R       D  L + ++            +  + +          +  ++     ++
Sbjct: 62  SDVRRIYNGYLDTQLQSSTALSADAVAYSGQASKTDTLL--SDSATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + +++     +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   ++K++E++G+  +  N N  +   +  + +     
Sbjct: 180 LNKQITQASAGNATPNTLLDSRSEAVRKLNELVGVKVVENNGNFDIYTGTGQSLVSGGTS 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     S  +       +       ++  S +  G I  LL+ R+ V+    N+L  
Sbjct: 240 YKMSASPSPSDPLQYNVQVAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + I +T         N +   
Sbjct: 297 TAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTANDYEVTFSDSSNFSVRRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAA 413



 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 77/309 (24%), Gaps = 4/309 (1%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +    +    +      +      +S          +   +   T             
Sbjct: 378 RRLPNGESVGAGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGAAGISVALTDAK 437

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                         SN           N  S +      A L+         +  +    
Sbjct: 438 DIAAAAPLTATAGSSNSGTGGFTQPVLNTKSNIYDSTQTADLRNALKSSTPMKLVMGAAN 497

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              + S++  +   G   +  G  +   I        +             S  +F    
Sbjct: 498 SSGVQSYTLINASGGAVLDQNGNAVGGSIIQGQANTVKLNVGYTDTTTTPSSKTAFELQM 557

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----GINTNVTLLEYARNSIGW 410
                    +  ++       +   ++     +               +L     +++  
Sbjct: 558 TISGSPVANDTFSIGMTGGGSSDNRNALAVAGLQTAKTVGVINGGVGTSLSGAYASTVSV 617

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +    S S +    +  V +    S  +  GV+L EE S LIK +Q Y  S+++I     
Sbjct: 618 VGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQT 677

Query: 471 MLQTLLEGV 479
           +  TL+  +
Sbjct: 678 IFSTLINSL 686


>gi|330830297|ref|YP_004393249.1| flagellar hook-associated protein FlgK [Aeromonas veronii B565]
 gi|328805433|gb|AEB50632.1| Flagellar hook-associated protein FlgK [Aeromonas veronii B565]
          Length = 667

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 126/384 (32%), Gaps = 7/384 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENKN 61
             +     +      +   +   NI N +++ YVR  T+   +   +       +    +
Sbjct: 3   SDLLGIGSSGVLAQQRLLQTTSNNIVNVNSQGYVRERTLVYTNTIGLGTGDIKTQRVIND 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   +S       L  +E L  + S     +NS    I+    S  S +++ +E 
Sbjct: 63  YMQGEVRRDTS--AYHASLTHYEQLAGVDSLLGDTSNSVGAAITSYFKSFHSANESPAEI 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              K V+     +V  F+T + ++ K     +  IE E   +   L+ +  +N AI    
Sbjct: 121 GGRKVVMTELSGMVNRFHTLSAQLDKQSDTLNTRIEDETKQVNSLLTSINDLNQAIIRTQ 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            S  +     DQRD  ++++SE + I T+ + N  M+V  S G +L              
Sbjct: 181 GSPEENLMLFDQRDEAIRQLSEKMDIRTVAQPNGSMLVNMSTGHSLILDGGVAQFKVIAG 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                 +   + +     + +  +    G +  L + R + +   + +L ++A  +  + 
Sbjct: 241 DPDSRDQELQLTLGDNQATIDHDTF--GGAMGGLFKAR-TDLEPTKRELGQLAVAMADAM 297

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           ++++ +  + +N  G  I                             + +       +  
Sbjct: 298 NQQNRLGMDLDNEIGGDIFTLPTSKGLPYGNNTGTVGANVSFVPGKGTSVTPFDYEVRFS 357

Query: 362 LWNVKNLAGYPDLINHYCDSFNKN 385
                 +       N    +    
Sbjct: 358 SATGYEVFSLDKSGNRTSVATGTT 381



 Score = 93.2 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 69/230 (30%), Gaps = 5/230 (2%)

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
             +G       G     G          + +     Q+ ++         + D       
Sbjct: 441 TNNGGGADIKLGGVFNTGAGSG---FGTNSLSPTAPQVVKIDANGNYQVFQADGTTLIGT 497

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                   + +  + N    G +             S      +     L    N     
Sbjct: 498 APASSKGQNLMSAIVNPFPAGAAVYANPKQAPGYEFSITGTVNANDSFKLSYNSNGFADN 557

Query: 373 DLINHYCDSFNKNFIFDPVAGINTN--VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                  +  NK+ +     G  TN  +T  +     +  +  N S +  L   ++    
Sbjct: 558 SNGLVLAELQNKDLVRKSTNGGTTNDKMTFNQAYSGLVMEVGNNTSQAKTLLKANESKLI 617

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  + +  GVNL+EE + LI+ +QSY  S +++     +  TLL  V+
Sbjct: 618 QSTGIFESVSGVNLEEEAANLIRFQQSYAASAQIVSTAKTIFDTLLSSVR 667


>gi|157736472|ref|YP_001489155.1| flagellar hook-associated protein FlgK [Arcobacter butzleri RM4018]
 gi|157698326|gb|ABV66486.1| flagellar hook-associated protein FlgK [Arcobacter butzleri RM4018]
          Length = 636

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/453 (13%), Positives = 123/453 (27%), Gaps = 30/453 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52
           MSL   FN AQ   + +     ++  NI N D   Y +R T  +         +   V V
Sbjct: 1   MSLFGTFNVAQTGLSASRYGIETVSNNIANKDTDGYKKRVTDLSEIGQMGSSITGRGVNV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                              +       L +     E + A +      +  I+    ++E
Sbjct: 61  DGVSRVTSQYLYDNYTKEYTKTSYYDKLTNMLGNIEKVFA-ETDTAGLSVDINNYFTAVE 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N +  I    +    + +V N       V++ ++    E++  +  +   L E+  
Sbjct: 120 QLRSNPNSQIYKSYLQSQGQALVDNLQRLYSSVEQQQSIEKVELKTNVKEVNSILKEIAD 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  +       +  +D LD+RD L  K+S+ + +     N  ++ +             
Sbjct: 180 INGKL---ENYTNSTNDLLDKRDALELKLSQYVNVDINRDNGYEIKI------------- 223

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                  ++S T+  E    + D   V            + +L    D       +  D 
Sbjct: 224 --GGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNEDGTAKAAYDANDV 281

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +   L    ++ +               D      +       + +     ++ N     
Sbjct: 282 IKYTL---NNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVTMDNLTRALAFKINNDPKL 338

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +    +N   +    D      DS     +    AG     T             
Sbjct: 339 SQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKANEFTGTISIVRYDATNA 398

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
               ++   +                   VNL 
Sbjct: 399 VQEREALYKNESQSTTAESDVVLKILEQNVNLS 431



 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/434 (9%), Positives = 120/434 (27%), Gaps = 15/434 (3%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +   + +    + +    ++ L        Q       ++   ++ +  +  +      
Sbjct: 216 DNGYEIKIGGVTALSSGTLNRELEISYKDTKQVDKFNYIQSNGTVLDSLKYNEDGTAKAA 275

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               D ++    N     +   + +       N  ++    + +    D         + 
Sbjct: 276 YDANDVIKYTLNNDDNLSVTIQIGEVVNGDWDNDPSTPDTGEAVT--MDNLTRALAFKIN 333

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                   V                          K   +        N     +     
Sbjct: 334 NDPKLSQYVTAHNGDYNDGYMVYPGDNRGLSTDSDKYLRVESNEAGKANEFTGTISIVRY 393

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                   R+  ++  +  T       + I    V+ + GS   + +  +     +  + 
Sbjct: 394 DATNAVQEREALYKNESQSTTAESDVVLKILEQNVNLSSGSIKAQVENLSSSSPNNK-IQ 452

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            + + LD +A      + +   +            ++ +   +       +    +    
Sbjct: 453 SYLDNLDSLAATFSDIYDQYIQVG----------KSEYVYGQNAANDYNGTPKGEIVSVG 502

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             + + ++             +    Y   I    D        D  A      +L E+ 
Sbjct: 503 LFSGTSVKTLAFNKNAVNDLKQEQIEYLATIQWKTDLSFDGKGQDSTA--TNTTSLSEFF 560

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           RN+   +  +  ++         +   I  +Y+N V V+  +E+  L+K++ +Y+ + ++
Sbjct: 561 RNTKVNVSSDTENAKYSKEVQANIAQTIGTTYNNIVKVDEDDEMVNLMKLQAAYSANAQM 620

Query: 465 IMFTDKMLQTLLEG 478
           I   D+M++ +L  
Sbjct: 621 ITAVDEMIKVILGL 634


>gi|15964432|ref|NP_384785.1| flagellar hook protein FlgE [Sinorhizobium meliloti 1021]
 gi|307311574|ref|ZP_07591215.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C]
 gi|20141447|sp|Q9X5Y0|FLGE_RHIME RecName: Full=Flagellar hook protein flgE
 gi|15073609|emb|CAC45251.1| Flagellar hook protein [Sinorhizobium meliloti 1021]
 gi|306899591|gb|EFN30220.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C]
          Length = 406

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/480 (9%), Positives = 106/480 (22%), Gaps = 74/480 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL        +  N  S + +++  NI NA+   Y R  T  +         +      
Sbjct: 1   MSLYGTMRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSY----- 55

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +S   Q  +  S              + +                    +
Sbjct: 56  ----------NSGGVQTEVRYSISQQGATTFTTSASDLAIDGG------GFFIVEGANGQ 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      +      N S   +     +A  +  + ++            +  I   
Sbjct: 100 EYLTRAGSFVPDSEGNLVNASGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASDGLIAAG 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           +       +                                                   
Sbjct: 160 STKGSMGANLP----------------------------------------------SGA 173

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
               V++ S  ++           +    G     L+I D                    
Sbjct: 174 PVGDVSTTSLVVYDSQGNTRILDFNYEKTGANAWTLEIVDRASGDALTVPPVTLAFNAAG 233

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                P    +     +            +   I+       Q     +        +  
Sbjct: 234 ELTTSPATVVANGALIV-----PPPATGAVVGSITIDFSKTTQLGYAFNADGGSIDGNAP 288

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +          +A + +   L   + N         S    
Sbjct: 289 SKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLRPESGNVYSQ--GVDSGVII 346

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   F  I      +  V++ EEL+ +I+ +++Y  ++K+     ++L+ L+   +
Sbjct: 347 TGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 406


>gi|23092321|gb|AAN08646.1| FlgK [Aeromonas hydrophila]
          Length = 664

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 118/367 (32%), Gaps = 7/367 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--TISPENVTVVTQRSENKN 61
             +     +      +   +   NI N +++ YVR  T+            +        
Sbjct: 3   SDLLGIGTSGVMAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNSVGLGTGDMLTERVINA 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   +S          +E L    +     +NS    I+    +  + ++  ++ 
Sbjct: 63  YAQGEVRRDTS--AYFASATRYEQLSNTDTLLGDTSNSVGAAITSYFKAFHTANEAPADI 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              KT +     +V  F+T + ++ K     +  I  E   +   ++ +  +N AI    
Sbjct: 121 AGRKTTLSELSGMVNRFHTLSAQLDKQTDTINTTIGDETKRVNGLINSINDLNQAIIRTQ 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            S  +     DQRD  ++++SE + I T+ + N  M++  S G +L              
Sbjct: 181 GSPEENLMLFDQRDEAIRQLSEKMEIRTVPQANGSMLINMSTGHSLVLNGGVAQFSVVPG 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                S  + + +      ++   +   G +  L   R+  +   + +L ++A  +  + 
Sbjct: 241 --NPDSRESELQLTAGTNKTSINESTIGGGMGGLFSARND-LEPAKRELGQLAAAMADAM 297

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           ++++ +  + +N  G  +            Q                S +       +  
Sbjct: 298 NQQNRLGMDLDNELGGDLFSLGVSDGLPYDQNTGTGAAKVNFVPGKGSEVTTFDYEVQFS 357

Query: 362 LWNVKNL 368
                 +
Sbjct: 358 GATGYEV 364



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 50/199 (25%)

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                     +++ P     +          ++                           
Sbjct: 456 NTSTGSGFGTNTLDPTAPQVVKVDNSGNYEVYAADGTTLIGVAPASSKGQNLMAAIESPL 515

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               +      +P Y  + +                        L      + +      
Sbjct: 516 GGPKVYANPTQSPGYEFSITGTVQPKDSFTLSYNQDGFADNANGLALAELQNKDLVRKST 575

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                N  +T  E     +  +  N S +  L   ++      +  + +  GV+L+++ +
Sbjct: 576 NTGTSNDKMTFNEAYSGLVTGVGNNTSQAKTLLQANEAKLTQSTNIFESVSGVSLEKKAA 635

Query: 450 FLIKVEQSYNISNKLIMFT 468
            LI+ +QSY  S +++   
Sbjct: 636 NLIRYQQSYAASAQVVSTA 654


>gi|85712254|ref|ZP_01043305.1| flagellar hook protein [Idiomarina baltica OS145]
 gi|85693881|gb|EAQ31828.1| flagellar hook protein [Idiomarina baltica OS145]
          Length = 466

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/483 (12%), Positives = 122/483 (25%), Gaps = 29/483 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            FN A +  ++A +       N+ N     +                     +       
Sbjct: 2   SFNIALSGISSAQKDLDVTANNVANVRTTGFKGSRAEFADVFANNIFSGSDQQTGNGSAT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            S  +      L+   +++        F A    ++  D             + + +SY 
Sbjct: 62  ASVAQQFSQGTLNFTQNSLDMAISGNGFFATTSGIAQQDFT----YTRAGAFKLNDDSYI 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L    +D+A    Q+ + +A    +I   A      E       L        
Sbjct: 118 VNNQGRFLHGFPVDSASGATQSTSLAASGPIRIPDSAGAPSATENQYQSFNLDARAP--- 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                     D  +  +  D      S    I   +  ++ M  Y             ++
Sbjct: 175 --------GIDVSNGFNPEDPTSYTSSTSTTIYDSLGESHVMTTYYVKRNAADVGGQENV 226

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                       ++NP    G   + +   +   G    +   R                
Sbjct: 227 WDVYNTVDGQMVDTNP--SQGYTGAPSYEPSPGDGVDNTVSSQRIVFDQSGSPVGVPNPG 284

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                     P + +  NV                 +          Q+ S+ S      
Sbjct: 285 GYNLDSDTFPPASISLANVLSNGADTSQNVQIFYRDRLDQGGDTAPTQFASDFSVNLLEQ 344

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        ++A    +   Y +   +      +        L +       W E   
Sbjct: 345 DGTTVGRLTNIDIAEDGLISASYSNGDVQYLGKVALVRFANEQGLTQLGDA--SWSESQS 402

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +  VF  I  S      V+L +EL  LI  ++++  +++ +   + + Q +
Sbjct: 403 SGIATSGEANSGVFGTIEASALENSNVDLTKELVDLISAQRNFQANSRSLEINNSLQQNI 462

Query: 476 LEG 478
           L+ 
Sbjct: 463 LQI 465


>gi|114777912|ref|ZP_01452826.1| probable flagellar hook-associated protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551699|gb|EAU54251.1| probable flagellar hook-associated protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 575

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 136/452 (30%), Gaps = 21/452 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +    N A +      +    +  NI NA+   Y R+                    V V
Sbjct: 2   IFDSLNIAASSLQTQQKSINVVSHNIANANTAGYSRQVADIATLTPESVGGLSLGRGVNV 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                    M +  L  + S +       +       +      N      +     S +
Sbjct: 62  TGISRIVDPMINSALSNNGSQMNYWTTQNTGLNSVANVFG-SLQNTGLASALDNFFLSWQ 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N  +      V    E ++ N  + ++++   ++ AD +I+ +I    + +  +  
Sbjct: 121 QLANNPQDSAQQFNVRTKGETLITNLGSMSQQLSAAQSSADGQIDSQIQQANKLIDTIAA 180

Query: 173 VNDAIKFKT----ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           ++  I+ +     +S   A+D  DQRD  ++ ++ ++ +  I  NN  +++ T+ G  L 
Sbjct: 181 LSTQIRKQENALSSSAGTANDLRDQRDQAVRSLANLLPVQQISDNNGGLLLQTASGDLLT 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +                T+         +  +    +    G I  L+ +RD+ +  + +
Sbjct: 241 QDGVARHLA------RGTAIGGGFAGLVIAQTGQAVNIGQSGSIGGLIDLRDNKLGGYMS 294

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q++ +A  L  S ++    A ++     +                 S          S  
Sbjct: 295 QINSLAANLAFSVNQIHASAASATTDTTMTAGQPSNVALALNDPAQSAAFANQIVSGSFK 354

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             + +    +        N+      +     S N            + + +     +S 
Sbjct: 355 IHVYNATGTATPAGGTAINITAGTTTMADVITSLNAVTGISASMDAGSRLNITAATGSSF 414

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                  +      + S    +  +    +T 
Sbjct: 415 ALSNDTSNTLAAYEVNSYFTGSSAATLNLSTS 446



 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 111/410 (27%)

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
           S      +L+ +  AL   +   ++  +S     + LRD  +   ++L+  +  + + DN
Sbjct: 166 SQIQQANKLIDTIAALSTQIRKQENALSSSAGTANDLRDQRDQAVRSLANLLPVQQISDN 225

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
              ++    +     Q   A                +   T     I    +        
Sbjct: 226 NGGLLLQTASGDLLTQDGVARHLARGTAIGGGFAGLVIAQTGQAVNIGQSGSIGGLIDLR 285

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
            ++    + +I+ +        N       ++   T             +N    ++   
Sbjct: 286 DNKLGGYMSQINSLAANLAFSVNQIHASAASATTDTTMTAGQPSNVALALNDPAQSAAFA 345

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
              + G        +               +      + +  +  V   S S       N
Sbjct: 346 NQIVSGSFKIHVYNATGTATPAGGTAINITAGTTTMADVITSLNAVTGISASMDAGSRLN 405

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
                G   A      +      ++     +     N S        +          + 
Sbjct: 406 ITAATGSSFALSNDTSNTLAAYEVNSYFTGSSAATLNLSTSIQASPAAIHTGRVDPLTST 465

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                N    +  +          + + +L             + + S           +
Sbjct: 466 ISSSDNSAAIAIMQLQNQAVSFDGSLSSSLHNRTTAVSTQYGNDVATSLQQRQYRTAEAD 525

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++       GVN  EEL  +IK +++Y  S K+I  T++M+ +LL  ++
Sbjct: 526 SLNAQRQAISGVNTDEELVSMIKFQRAYEASAKIITTTNQMMDSLLGLIR 575


>gi|52841451|ref|YP_095250.1| flagellar hook protein FlgE [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628562|gb|AAU27303.1| flagellar hook protein FlgE [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 437

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/482 (10%), Positives = 124/482 (25%), Gaps = 58/482 (12%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQR 56
           FN A +    +++    I  NI N+    +                          V   
Sbjct: 3   FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGSNAVGGGVKLS 62

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +++     L   ++ +        F  L +                 + + + E+Y  
Sbjct: 63  RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKIYTRAGQFKLNNENYIV 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +   L   + D+   +      ++ +++   A+        +S      S+    N  
Sbjct: 116 NANNQRLTGLLTDSNGAITG----ASGDLRINTANITPRASSNVSVGVNLNSQSKAPNV- 170

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                                   +      +    N     +Y S G +   ++     
Sbjct: 171 ----------------------DWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                + +  + S     +   V+    +      + A            QN  +     
Sbjct: 209 DSTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                S       ++  +P   I       +      ++  +  + Q+ S  +      +
Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNN 316

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     ++     +   Y +  +       +A      +L         W E   S
Sbjct: 317 GYTTGSLAGLDIDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGN--TSWAETTAS 374

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          I+        V+L  EL  LI  ++++  + + I   D + QT++
Sbjct: 375 GQPLISAPGSGGLGLINSGRLEESNVDLTGELVKLINAQRNFQANAQTIRTGDAITQTII 434

Query: 477 EG 478
             
Sbjct: 435 NI 436


>gi|254516989|ref|ZP_05129047.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3]
 gi|219674494|gb|EED30862.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3]
          Length = 429

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/483 (8%), Positives = 104/483 (21%), Gaps = 66/483 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F+ A +  N A+     I  NI N+    +                          V+ 
Sbjct: 2   AFSTAISGINAATADLGVISNNIANSSTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++++        F  L                     +   E + 
Sbjct: 62  AGVTQEFGQGNITFTNNSLDLAINGNGFFQL-------SVEGAIEYTRAGNFQVDREGFL 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +     L    +D   +V                    +I+  + +     S     N 
Sbjct: 115 VSNQNSRLQGFQVDAGGDVTGQLGDI-------------QIDTSLIDPNATASVSLTSNL 161

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
             +  +                                      +        E      
Sbjct: 162 DSREVSPGTG----------------------------------FGGAAAPFTEYDAFAA 187

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +     + ++    D +           K        +   +  + QN    +  
Sbjct: 188 TPTSPSPADFNATTSTTIYDSLGNPHVLSLYYVKTANANEWNVFSLIDGVSQNAGAPVTL 247

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +         +        +               +  +    Q+ +  +      
Sbjct: 248 NFASNGQFTAASLTDIPIAGWDPLNTDGSSTGALSPASFNVDLAQTTQFGTAFAVSSVVQ 307

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +         Y +  ++      +A  N    L         W+E   
Sbjct: 308 DGFSAGQLRGLEIDESGVAFARYTNGESRALGQIALASFNNQNGLQPVGD--TNWVETFS 365

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S S ++          +  +      V + +EL  LI  ++++  + ++I   D + QT+
Sbjct: 366 SGSPNVGEPGTSGLGVVQSAALEDSNVEITQELVDLIVAQRNFQANAQVIQAEDAITQTV 425

Query: 476 LEG 478
           +  
Sbjct: 426 INL 428


>gi|77165838|ref|YP_344363.1| hypothetical protein Noc_2375 [Nitrosococcus oceani ATCC 19707]
 gi|254433154|ref|ZP_05046662.1| conserved domain protein [Nitrosococcus oceani AFC27]
 gi|76884152|gb|ABA58833.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207089487|gb|EDZ66758.1| conserved domain protein [Nitrosococcus oceani AFC27]
          Length = 425

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/483 (11%), Positives = 119/483 (24%), Gaps = 70/483 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------ 59
            FN + +  N AS        NI NA    + R            +    ++        
Sbjct: 2   AFNTSLSGLNAASSDLDITANNIANASTTGFKRSRGEFADIFAVSSFGRSQTAVGSGVLL 61

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L    +++      +   AL   +++DD                 E Y 
Sbjct: 62  NKTAQQFEQGNLDFTQNSLDLAISGRGLFALSPSLNSDDL----VYSRAGAFSVDKEGYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L     +          +++  ++   +    +   ++S      S+   ++ 
Sbjct: 118 VNSSGQYLRTFPTNANGTATAASLSNSHPLRLPTSAGTPQATSQVSIGANLPSDAAALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                          LD  D      S    +   + N++   +Y    T          
Sbjct: 178 -------------ASLDLLDASTYTASTSETVYDSLGNSHISTLYFLKDTNGINQWAVYH 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           + +   +      +    I    ++ +    +                            
Sbjct: 225 SLDGTLANINGGTAGAGGIQYGTLNFDATGILTG-------------------------- 258

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                          S   P +     + +  N +   +        Q  S  +      
Sbjct: 259 ---------------SVPDPLITDPLALNNGANDIAMRLDFAANNTTQVASPFNVAVLNQ 303

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      +++    +  +Y +  N       +A       L +   N   W E   
Sbjct: 304 DGFTSGRLTGLDISNTGIIQANYSNGQNSTLGKIALAQFPNEQGLRQLGNN--AWAETVS 361

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +          F  I      +  V+L  EL  LI  ++++  + K I     +  T+
Sbjct: 362 SGTALAGEAGVGSFGLIQTGALESSNVDLTAELVHLITAQRNFQANAKAIETASTVTDTI 421

Query: 476 LEG 478
           +  
Sbjct: 422 INI 424


>gi|327480020|gb|AEA83330.1| flagellar basal body FlaE domain-containing protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 558

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/558 (10%), Positives = 129/558 (23%), Gaps = 87/558 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---------- 55
            FN   +    AS+       NI NA    + +     +       + T           
Sbjct: 2   SFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVLM 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY------------ 103
            + ++      ++   +A+        F  +    +                        
Sbjct: 62  SNISQQFNQGNINYTQNALDLAINGNGFFQVSNNGAVSYTRAGYFGTDREGFLVDNFGYK 121

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +           +N     L     + A +     NT+      ++A A  +   +    
Sbjct: 122 LQGFPVDNNGNLQNGVVGNLQVQTTNQAPKATSQINTAFNLNSTLKAPATWQASYDGVID 181

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT-- 221
           + +    T  +  +    A   +A       D L    S  +    IV +  D+   T  
Sbjct: 182 KVYRDNFTTESALVPLLPAGGTNAARGQAYMDALASSPSLTVYDQAIVDHMGDITSSTVE 241

Query: 222 --------------------------SDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
                                     +DG  L      +  F   +  T  S ++    D
Sbjct: 242 EVGQKLAGAIAAAELAAVEIAKAASGADGVKLLALRTANATFNPADPTTYNSSTSLNIYD 301

Query: 256 GVVVSSNQG----------------------SAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
               +                          +    G   + +    ++      +L  M
Sbjct: 302 SQGNAHVMTQYFVKTAPNTWTMNVLVDGVRPNFDSDGAQYSKVPFAYNLSFDANGKLSAM 361

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD-------------NKLCQGISETICV 340
               +                 G+        +                  +G +  +  
Sbjct: 362 TAADVVVGGNPVSTPTALGGALGVIAFAPGDWVPVSVDASGAATPNRADNPKGFTFDMRN 421

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             QY S  +                  +     +   Y +  +K      +A       L
Sbjct: 422 ATQYASAFAVNSVAQDGYTTGELAGLEIDDTGVIFARYTNGQSKVQGQIILANFANVQGL 481

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
               +    W++   S    +          +         V L ++L  LI  +++Y  
Sbjct: 482 TPVGK--TQWVQSFESGEPVVGTPGSGTLGALQAGALEDSNVELSDQLVNLIVAQRNYQA 539

Query: 461 SNKLIMFTDKMLQTLLEG 478
           + K I     + QT++  
Sbjct: 540 NAKTIETESAITQTIINL 557


>gi|154252984|ref|YP_001413808.1| hypothetical protein Plav_2542 [Parvibaculum lavamentivorans DS-1]
 gi|154156934|gb|ABS64151.1| protein of unknown function DUF1078 domain protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 454

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 55/491 (11%), Positives = 115/491 (23%), Gaps = 48/491 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS       A       S     I  NI N+    + R DT         T        V
Sbjct: 1   MSFFGSMTTAITGIRAQSSALGHISDNIANSQTIGFKRTDTNFQDIVTASTSRNHLPGAV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFE----ALKEMMSADDHYNNSPTHYISKLRD 109
                  N     + A             F      +  +       N +          
Sbjct: 61  LAAPSFTNNVQGSIDASEVPTHMAINGSGFFVVSARVATVDGNPVFDNVNYYTRRGDFSM 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N     L    ID           +   V    +      +   +     +S 
Sbjct: 121 DKYGYLVNGGGYTLQGLAIDPV---------TGNPVGDTPSRIQINRDFLAARTTSTISY 171

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              +    K   A    A+  L         ++++  IS    +       +    T ++
Sbjct: 172 KANLPAWPKTVNADPAIANSELLTVGRFTPALADLSVISAANEDIFLDNSLSGGAVTGYD 231

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +    N +   +     +      +    +S+  +              D  V + Q+ 
Sbjct: 232 ELGAPANVQFRWAKIDNEDGGGDTWNLFYKTSDSATGAT-----------DKWVNVGQDY 280

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             +    L  +             V           L N      +  +           
Sbjct: 281 AFDGQGRLTPAVDSTTITGLTVNGVS----------LGNVTLDHGASNVTQFEDDNGTVK 330

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           ++    +   Y +    +     +A  N +  L +       
Sbjct: 331 TTELDQNGYPSGELVSIAVSENGRITGTYSNGKTVDLAQVSLATFNASDKLKKL------ 384

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 + + +           I  S      V++ +E S LI  +Q+Y    +++   D
Sbjct: 385 -DGTAFAATQESGEPMLGGGGDIIASAREASNVDIADEFSKLIVTQQAYTAGTRIVTTAD 443

Query: 470 KMLQTLLEGVK 480
           ++++  L   +
Sbjct: 444 ELIRETLNMKR 454


>gi|330972413|gb|EGH72479.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 442

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 101/478 (21%), Gaps = 43/478 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60
            FN   +    A++       NI N     +                      +  S   
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   +  S               +      +                E Y  N S 
Sbjct: 62  TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSSN 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D    VV    +                                        
Sbjct: 122 MKLQGYNVDANGAVVTGALS------------------------------------DLRV 145

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            AS  +        +      +  +         +         T  ++T       ++ 
Sbjct: 146 NASNLEPKATTTITNSANLNSTTALPTVATFDATDTNSYNVKYSTPTYDTQGNAHTLDQY 205

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              T T+  +   +      S+  S  P           + V     +   + A +   +
Sbjct: 206 FVKTGTNTWSMYSLMDGRSISDPTSTAPDKNDLTFDSSGNLVTTAGGSVPTDSANIKFNA 265

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G                 I   +    Q  S    L+   +    
Sbjct: 266 DGTFAVSNWVPGVQVGTGTTATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYAT 325

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  N+    +L   Y +  ++      +        L +       W E   S    
Sbjct: 326 GQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVPV 383

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 384 SGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 441


>gi|300114799|ref|YP_003761374.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113]
 gi|299540736|gb|ADJ29053.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113]
          Length = 425

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 118/483 (24%), Gaps = 70/483 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------ 59
            FN + +  N AS        NI NA    + R  +         +    ++        
Sbjct: 2   AFNTSLSGLNAASSDLDVTAHNIANASTTGFKRSRSEFADIFAVSSFGRSQTAVGSGVLL 61

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      L    +++      Q   AL   ++  D                 E Y 
Sbjct: 62  NKTAQQFEQGNLDFTQNSLDLAISGQGLFALSPSLNDKDL----VYSRAGAFSVDKEGYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L     +           +++ ++   +    +    IS      S+   ++ 
Sbjct: 118 VNSSGQYLRTFPTNENGTATAASLNNSQPLRLPTSAGTPQATSRISIGANLPSDTAALDP 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                          LD  D      S    +   + N++   +Y    T          
Sbjct: 178 V-------------NLDLLDTSTYTASTSETVYDSLGNSHISTLYFLKDTNGTNQWAVYH 224

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           + +   +      +    +    ++ +   A+                            
Sbjct: 225 SLDGTLANINGGTAGAGGVQYGTLNFDATGALTG-------------------------- 258

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                          S   P    +  + +  N +   +        Q  S  +      
Sbjct: 259 ---------------STPDPLATDSIALNNGANDIALTLDFAANNTTQVASPFNVAALNQ 303

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      +++    +  +Y +  N       +A       L +   N   W E   
Sbjct: 304 DGFTSGRLTGLDISKTGVIQANYSNGQNSTLGKVALAQFPNEQGLRQLGNN--AWGETVS 361

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S S          F  I      +  V+L  EL  LI  ++++  + K I     +  T+
Sbjct: 362 SGSALAGEAGVGSFGTIQTGALESSNVDLTAELVHLITAQRNFQANAKAIETASTITDTI 421

Query: 476 LEG 478
           +  
Sbjct: 422 INI 424


>gi|54294163|ref|YP_126578.1| flagellar hook protein FlgE [Legionella pneumophila str. Lens]
 gi|53753995|emb|CAH15466.1| Flagellar hook protein FlgE [Legionella pneumophila str. Lens]
 gi|307609977|emb|CBW99506.1| flagellar hook protein FlgE [Legionella pneumophila 130b]
          Length = 437

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/482 (10%), Positives = 121/482 (25%), Gaps = 58/482 (12%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQR 56
           FN A +    +++    I  NI N+    +            +             V   
Sbjct: 3   FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +++     L   ++ +        F  L +                 + + + E+Y  
Sbjct: 63  RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKIYTRAGQFKLNNENYIV 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +   L   + D+   +             I   A   + + ++               
Sbjct: 116 NANNQRLTGLLTDSNGAITGASGDLRINTANITPRASSNVSVGVNM-------------- 161

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                            +   +  +      +    N     +Y S G +   ++     
Sbjct: 162 -------------NSQSKAPNVDWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                + +  + S     +   V+    +      + A            QN  +     
Sbjct: 209 DPTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                S       ++  +P   I       +      ++  +  + Q+ S  +      +
Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNN 316

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     ++     +   Y +  +       +A      +L         W E   S
Sbjct: 317 GYTTGSLAGLDIDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGN--TSWAETTSS 374

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          I+        V+L  EL  LI  ++++  + + I   D + QT++
Sbjct: 375 GQPLVSAPGSGGLGLINSGRLEESNVDLTGELVKLISAQRNFQANAQTIRTGDAITQTII 434

Query: 477 EG 478
             
Sbjct: 435 NI 436


>gi|251772436|gb|EES53003.1| probable flagellar hook protein FlgE [Leptospirillum
           ferrodiazotrophum]
          Length = 458

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/490 (13%), Positives = 133/490 (27%), Gaps = 50/490 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT------ 54
           M +L+    A +  +      + I  NI N +   +     +                  
Sbjct: 1   MGILSSMYVANSGLSAMGTDMSVIGNNISNMNTNGFKAGRAVFANIYGQTLAGKSNAVGP 60

Query: 55  --------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                     S         +   S+A+        F + +    A              
Sbjct: 61  SQPGSGVYVESIEPLFTQGSVQTTSNALDLAIQGNGFFSFRNRQGAI------LYGRNGA 114

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           L         +    IL   + D   +++      +     I   A + +   I+     
Sbjct: 115 LSLDRNGRIVDQGGHILQGYMADARGKILPKVRDLSVPQSTIPPKASQNVYSRIN----- 169

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
                 ++  +  K  +        +  D L  +           +     V  T DG T
Sbjct: 170 ------LDANMTEKLKTGKTFSKSSNIFDSLGIEHLLTYKFHPTNQVGVWAVEATLDGAT 223

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L +            SYT  S   P+ I G+V S           +              
Sbjct: 224 LTKGGGS-------ISYTPASGGKPMTIKGMVASVAFDGNGNVETVNYGGSPVSQSSDGV 276

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           QN +  MA                +     LFI    + + +    G ++ +    QY  
Sbjct: 277 QNVVYTMAL----------ADKAKTPVNLSLFIPKAGQKVADNSKDGTTQQVLDLTQYAE 326

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
             + + +     K    +   +     ++  + +    N     V+  N    L+    N
Sbjct: 327 PSTTIEETQDGYKAGDLSNIAIDRAGRIVGSFSNGTEHNLGAIAVSTFNNPNGLVSVGAN 386

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              + E   S   ++    Q     +  +      V+L  ++  +I  E+ Y  +  +I 
Sbjct: 387 L--YKESIGSGIANIGRAGQGGRGQVLANSLEQSNVDLGRQMIDMISAERGYQANASVIS 444

Query: 467 FTDKMLQTLL 476
             ++++ TLL
Sbjct: 445 ADNQLMNTLL 454


>gi|312882659|ref|ZP_07742396.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369620|gb|EFP97135.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 435

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/481 (8%), Positives = 116/481 (24%), Gaps = 60/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N             V    
Sbjct: 4   YISLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSIFTHAKTTPGQGVQASK 63

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + ++Y   
Sbjct: 64  VAQQFHEGSSIYTNNPMDLRINGTGFFAVAKDRLTPTTNE---LTRNGAFHLNKDNYMVT 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    ++     V ++  S+               + I        +   +   +
Sbjct: 121 SNDEFLLGYQVNKDTGDVLSYEPSS---------------IMIPKEFGKPKQTANIEVGV 165

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +        D  D      S    I   +  +  M  Y     T   T       
Sbjct: 166 NLPANAPLRDPALFDYTDPETYNRSTSSTIYDSMGQSYKMTTYYLKDQTQPNTWQTYYTV 225

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +     +            + +       G + +L                      
Sbjct: 226 TDTDGEKPINIVGGDATSPTGQTGHTMKFNNDGTLASL---------------------- 263

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                       +  + P    A+ +        Q +S  +    Q+ +     +     
Sbjct: 264 --------NSGQDIVSEPLGAGANPVNLNGADPTQTLSFGLDSATQFAAPFELTKFDEDG 315

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 316 ATTGFLTKVDFDENGSVLGTYSNGENVILGRVAMVRVANEQGLDK--KGGTQWDATQFSG 373

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I         +++ +EL  LI+ ++++  +++ +   +   Q +L+
Sbjct: 374 DKIWGESNKGSFGTIRSGTLEQANIDMTQELVDLIQAQRNFQANSRALEVHNTTQQNILQ 433

Query: 478 G 478
            
Sbjct: 434 I 434


>gi|300693344|ref|YP_003749317.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum
           PSI07]
 gi|299075381|emb|CBJ34676.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum
           PSI07]
          Length = 642

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 132/407 (32%), Gaps = 15/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N        A         NI NA    Y R++ + T +           + V V 
Sbjct: 3   SSLLNIGATGLRVADINLQVTGNNIANASTPGYSRQEAVQTENTPMATGAGYLGQGVNVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  ++      L S  +  +   +D   N+     ++   ++ +S
Sbjct: 63  TVKRIYDQFLTAQVQSGQASTSAADQLNSLVSGLDSYLSD--SNSGLGSALTGFFNAADS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  +  A  +   FN  A ++  +    + +++ +++++     ++  +
Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAVAGQMNSLSTQVNTQVQTQVNSVNSTAQQIAAL 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ND I    A+     A+D  DQRD L+Q +++ I  S +   +    +Y  +G  L +  
Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKTSVVQTGDGQYNIYVGNGQALVQGN 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    + Y  T  S         V+ +  S +  G +  L+Q R + +   QN L 
Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVTID-DSQLGGGALGGLMQFRQNTLIPAQNSLG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    + ++    +     G  +                          +N    
Sbjct: 300 RLAAAITADVNTQNKEGMDLNGKLGTDLFSAAGPSVAASSSNTGTGSLTATITNANAGQG 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V +       +         + +   + G   + 
Sbjct: 360 YDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGAMNSG 406



 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/457 (7%), Positives = 104/457 (22%), Gaps = 17/457 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +         R +   +   +  +  +++ Q    Q    +    +      +
Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKTSVVQTGDGQYNIYVGNGQALVQGNQS 242

Query: 99  SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                ++       L    K+ +  +           +          +   +    +  
Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVTIDDSQLGGGALGGLMQFRQNTLIPAQNSLGRLA 302

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +++     E   +N  +     S           +     ++  I  +   +  + 
Sbjct: 303 AAITADVNTQNKEGMDLNGKLGTDLFSAAGPSVAASSSNTGTGSLTATITNANAGQGYDY 362

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261
            V Y+    T+             +  T                         +      
Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGAMNSGDSFLVRPTANAASTMQ 422

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              +        + + +           +  +      + S        + +   L    
Sbjct: 423 TLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGSPLASAINLTYSGGSLSGFP 482

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   +                Q  +                 +   ++          ++
Sbjct: 483 GNVTVTVNGTSTTYSGTAPYTQGATYSFNGIQMSLTGTPASNDTFTVSANTANSTDGHNA 542

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + +         +L     N +  +    S +       + +    +    +  G
Sbjct: 543 SAFAQLRNATVLDGGTTSLGSAWTNLVTQVGIQASQASANLTSQKALLASSTSQQQSVSG 602

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL +E   L+K +Q+Y  S K++   + +  +LL  
Sbjct: 603 VNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSI 639


>gi|114762177|ref|ZP_01441645.1| flagellar hook protein FlgE, putative [Pelagibaca bermudensis
           HTCC2601]
 gi|114545201|gb|EAU48204.1| flagellar hook protein FlgE, putative [Roseovarius sp. HTCC2601]
          Length = 432

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/489 (10%), Positives = 127/489 (25%), Gaps = 66/489 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M++ +  N   +     + + ++I  NI N+    Y R +T  T    +       +   
Sbjct: 1   MTISSSLNAGVSGLAGNASRLSAISDNIANSSTYGYRRVETDFTALVMSSGSQRAYTAGG 60

Query: 61  NMFDKVL--------HAHSSAIGQQRLLQSFEAL-KEMMSADDHYNNSPTHYISKLRDSL 111
              D +          + S+A            +  +                   R   
Sbjct: 61  TAIDNLRLIDEGGAIVSTSNATDLAVDGIGMLPVASQAQYEATGEPELLLTSTGSFRIDE 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
             Y  + +   L          +      +   ++ ++       +   +          
Sbjct: 121 NGYLASENGYYLMGWPAALDGSIPPYPRDTINGLEPVKFSLSLTGDPTTAVDMAL----- 175

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +        A+    +  ++  D +    S  I  +                      V
Sbjct: 176 NLPATETQAGAAGDAEYLEIEYFDNVGISQSISITFTPT--------------------V 215

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P      + +     S  +   I    ++ +  +    G    +  + ++    +     
Sbjct: 216 PATGISNEWSMVMTDSAQDGAVIGDYTITFDATT----GAGGTIATVVETTGGAYNAGTG 271

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                + G   E D  A  +                +K    +   + V        S L
Sbjct: 272 LFTVDVAGGPIEFDIGATGTTGGLSQLGDSFAPISISKDGSSVGNMVSVEVDENGYVSAL 331

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            D G     +   + +L  Y  +I     +F  +         + +  L +      G +
Sbjct: 332 YDSGQSQVLYQIPLVDLPNYNGMIAVDGSTFRPSP-------ESGSFFLWDAGDGPTGSV 384

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +                              ++ +EL+ +I+ +++Y+ + K+I   D+M
Sbjct: 385 KSYARQ---------------------ESATDIAQELTDMIRTQRAYSSNAKVIQTVDEM 423

Query: 472 LQTLLEGVK 480
           LQ      +
Sbjct: 424 LQETTNMKR 432


>gi|296122953|ref|YP_003630731.1| flagellar hook-associated protein FlgK [Planctomyces limnophilus
           DSM 3776]
 gi|296015293|gb|ADG68532.1| flagellar hook-associated protein FlgK [Planctomyces limnophilus
           DSM 3776]
          Length = 566

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 140/431 (32%), Gaps = 22/431 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MSL      A       S        NI NA+ K +VR     T               V
Sbjct: 1   MSLNGALAVASRSLEIFSASVQVSSNNIANANTKGFVRDAVSLTPAGSYQTGSLLVGSGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             V  R +     +  +HA +       +  +     E     +  +   +  ++    S
Sbjct: 61  LAVGVRQQLDTYLESRIHAANGDAASSTIKSATWQRLEATLG-ELGDEDLSTALNDFVAS 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ +         +  +   + +V +  +   +V  +R   + ++  ++    R ++++
Sbjct: 120 LQTLTGAPDSAGQRQITLQETQALVSHITSLRGKVDDLRTTLNDQLTSQVDEANRLINQI 179

Query: 171 TVVNDAIKFKTASK---HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             +N  I    A+     DA     +R   + ++SE+I +  I R +  + +Y+     +
Sbjct: 180 VNLNPKISALEANGLNQSDAGALRVERLNAINRLSELIPVKAIERPSGQVDLYSGSEYII 239

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
            +       + +    T  ++     ++     +        G+I+  ++ RDS++  F 
Sbjct: 240 LD------GYTQNLEVTPATDGTFGVLNVQTTITKASVTNGGGEIQGTIESRDSILGGFT 293

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  LI   +              +     + D +  L    +  +    Q+ S 
Sbjct: 294 KQLDQLASGLIYEANRIHSQGEGLTGYSTVTGTYQVADANAALNTSAAG-LNFPVQHGSF 352

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL-EYARN 406
              +R+  S          +L G            + N +    A +  +  L    A  
Sbjct: 353 TIKVRNLTSGETTESKISIDLDGLGTDTTLNDVVASLNAVGQVSAQVTADGQLQINAAAG 412

Query: 407 SIGWLEKNRSD 417
                  + S 
Sbjct: 413 YELRFGADSSG 423


>gi|238755324|ref|ZP_04616667.1| Flagellar hook protein FlgE [Yersinia ruckeri ATCC 29473]
 gi|238706460|gb|EEP98834.1| Flagellar hook protein FlgE [Yersinia ruckeri ATCC 29473]
          Length = 427

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/476 (9%), Positives = 110/476 (23%), Gaps = 54/476 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKSGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  L++                            +     
Sbjct: 62  NDGTPTTTNRRLDLAISQSGFFRLED----------------------------SSGGIS 93

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +E     +     +    A        + +N         ++         
Sbjct: 94  YARNGQFRLDENRNIVSQQGLHLTGYPATGTPPTVQQGANPVPLTIPQGMIAAKATTAGT 153

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              + +   D  D                  N        +  T F+++           
Sbjct: 154 MVVNLNSSHDVIDAAK-----------TFDPNKPDTYSFVNNITTFDSLGNSHVVSMYFV 202

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +  +    D     ++           A            +          + + +
Sbjct: 203 KTANNTWDVYSKDTSAKLTDP----------AKPFDPADPAAAAKRGTMNFNNEGVLTGT 252

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +    A ++           +   D  +            Q   + S      +      
Sbjct: 253 KDTAGAASAAPFTLNIPMGALNGADANVAGFALNMAGAMQQNTGSDSVSAQTQTGYAAGE 312

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +        L     N   W E   S +  + 
Sbjct: 313 FTGFQIEKDGSVVGTYSNQQKQLLGQIVLTNFANPEGLSPQGDNV--WKETGSSGAAIIG 370

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 371 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 426


>gi|313200563|ref|YP_004039221.1| flagellar basal body flae domain-containing protein [Methylovorus
           sp. MP688]
 gi|312439879|gb|ADQ83985.1| flagellar basal body FlaE domain protein [Methylovorus sp. MP688]
          Length = 402

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/473 (12%), Positives = 124/473 (26%), Gaps = 73/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+    I  N+ NA+   + +          N                
Sbjct: 2   SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANA--------------- 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G   +      ++   +  +  N      I+   +     S N       +
Sbjct: 47  ---LNGSGTGSAGIGVKVADIQRQFTQGNITNTENPLDIAINGNGFFRLS-NSGAITYSR 102

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 ++      +S   +    AD +  ++         L+++ + +  +  + ++K 
Sbjct: 103 NGQFQLDKAGYIVTSSGERLTGYVADTNGALQTGA------LTDIKISSADLAPQASTKV 156

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +    LD R  +L   S      T       + VY S G                 S   
Sbjct: 157 NDVFNLDSRSAVLPIASFNPADPTTYTQVVPISVYDSQGNPHTLQSYLIKTAANTWSVRT 216

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T +     +    ++ +    +     +A+                              
Sbjct: 217 TVDGGTTAVGSSTLTFDTNGLLTGTTTQAVTLA--------------------------- 249

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                     Q I+     + Q+ S+ S              + 
Sbjct: 250 -------------------PPTVPASQAITIDFASSTQFGSDYSLNSQVQDGYASGRLSS 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            + A    +I  Y +   K      +A       L     N     E   +    +    
Sbjct: 291 FSTAADGTIIGRYTNGQAKALAQVVLAKFANPNGLSALGNNQFA--ETADAGVPVIGKAG 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  S +    V+L  EL  +I  ++ Y  + + I   D++LQTL+  
Sbjct: 349 TGGLGTLQSSATEDSNVDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVNL 401


>gi|186477704|ref|YP_001859174.1| flagellar hook-associated protein FlgK [Burkholderia phymatum
           STM815]
 gi|184194163|gb|ACC72128.1| flagellar hook-associated protein FlgK [Burkholderia phymatum
           STM815]
          Length = 657

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 122/410 (29%), Gaps = 18/410 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             +F+   +  N A     +  +NI N     Y     +   S             V+  
Sbjct: 3   SNLFSIGLSGLNAAQWGLTTTGQNISNQATPGYSVERPVYAESSGQYTGSGYLGSGVSTT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +        L+   S  G      +  A    M          +  I+     L++
Sbjct: 63  TVQRQYSQYLTTELNNAQSQSGSLNSYYNLIAQLNNMVGSPTS--GISSAITSYFTGLQN 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + S   + ++ I NA+ +    N +  +  ++R + + ++   +  +  + S++  +
Sbjct: 121 VANDASNPAMRQSAISNAQSLADQINAAGDQYDQLRTNVNTQLGDTVKQINTYSSQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+  +A     +  LDQRD+ +  +S+++G+  + + +    V+  +G  L      
Sbjct: 181 NAQIQSLSAQGQPPNQLLDQRDLAVSNLSQLVGVQVV-QGDTGYSVFMGNGQPLVVADKS 239

Query: 234 DINFEKMNSYTVTSESNPI-----FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    T  +                    S    G+I  L+  R   +   + 
Sbjct: 240 FNLTTVTSPADPTETAVAYAGLSSLAGTTTPQILPDSTPLGGQIGGLMTFRSQTLDPAEA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +A       + ++ +  +     G  +                           + 
Sbjct: 300 QLGAIATSFAAQVNAQNALGIDLNGNKGGALFTVGNPTVYANANNTGGATLGATLSNPSQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
               D         + + N      +      +     I   ++G     
Sbjct: 360 PVSGDYSLAYDGTNYTLTNRDTGQVVGQASSLTSPIGGIQFNLSGTMNAG 409



 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/441 (8%), Positives = 108/441 (24%), Gaps = 2/441 (0%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             +   +  +V +   +          L   +S         ++  L  +          
Sbjct: 215 QVVQGDTGYSVFMGNGQPLVVADKSFNLTTVTSPADPTETAVAYAGLSSLAGTTTPQILP 274

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            +  +      L ++     +    +          Q    +A  +            + 
Sbjct: 275 DSTPLGGQIGGLMTFRSQTLDPAEAQLGAIATSFAAQVNAQNALGIDLNGNKGGALFTVG 334

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +    +              S+  + D+    D     ++       + + ++    
Sbjct: 335 NPTVYANANNTGGATLGATLSNPSQPVSGDYSLAYDGTNYTLTNRDTGQVVGQASSLTSP 394

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI--KALLQ 277
                  L  T+    +F    +    +       DG  ++++    V  G         
Sbjct: 395 IGGIQFNLSGTMNAGDSFTVEPTRGALNGFALTTSDGSAIAASSPVLVSTGTANTGTSTV 454

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
            + +V   +             +          S                       +  
Sbjct: 455 TQGTVSSGYTLPSTSTTLTYNSATGSLSGFPVGSTVTIDGTPPTSYNITATTTPVPYNPA 514

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              +                      +   +A  P       ++   + +    +  N  
Sbjct: 515 TGASMTITGAAINNVSLQITGSPANGDTYTIAPNPAGGKDGRNAQLISNLVTAKSMGNGT 574

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
           +TL +   N +  +    +     +     +   I+ +     GVN+ EE + L++ +Q 
Sbjct: 575 LTLTDSYANYVNDIGNQTNQVQTSNKAQSALVTQITTAQQAISGVNINEEAANLLQYQQL 634

Query: 458 YNISNKLIMFTDKMLQTLLEG 478
           Y  ++K+I     + QT+L  
Sbjct: 635 YQANSKVIQTAQTLFQTILGI 655


>gi|225871951|ref|YP_002753405.1| flagellar hook-associated protein FlgK [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791881|gb|ACO31971.1| flagellar hook-associated protein FlgK [Acidobacterium capsulatum
           ATCC 51196]
          Length = 472

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 75/495 (15%), Positives = 154/495 (31%), Gaps = 50/495 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
           S+   FN A           + +  N+ NA+   Y R   +               + V 
Sbjct: 3   SIGTAFNIATGALEADQAALSIVSNNVANANTTGYTREVPVWQMADSIQINGITYGDGVN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN--------SPTHY 103
           +   +S+   +  + L   + A        S     + + +     +          +  
Sbjct: 63  MTGPQSQRSPVLQQSLDQQTQAQSDSAARLSALQQVQGVFSSSISTSSSSTSSTVGISQD 122

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +S    +  +   N ++  L + V+  A  +  +FN++A+++    A  D +    ++ +
Sbjct: 123 LSSFFSAWSALEANPTQTSLRQGVLSAAANLTSDFNSAAQQLSSQAASVDHQSAGLVTQI 182

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               +++  +N  I    +   DA    D R   + ++S ++G++ I    N + + T+ 
Sbjct: 183 NNLTAQIAKLNTQIS-SQSPNSDAGSLEDARATAISQLSALVGVNQIQNQGNSLTLTTTS 241

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G  L                +        F D        G     G +  LL +RD  +
Sbjct: 242 GAVLVSGSQSFAL------SSGLVNGVTHFFDSNNNDITAGLTGAGGSLGGLLTVRDQDI 295

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P  Q+ LD +A  L  + + ++    ++   PG  I            Q           
Sbjct: 296 PQMQSALDTLAYSLGSAVNTQNEAGSDASGNPGTAIFSLPTSATGAATQI---------- 345

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                             + +   +A           S            I +  T   Y
Sbjct: 346 ---------------SVIMTDPNKVAAAASGDGSQNGSNATAVANLATQQIVSGDTPTNY 390

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  L    SD    +   Q     +     +  GV+L EE + L  +EQ+Y  ++K
Sbjct: 391 YSAFMTSLGSLVSDVQSQNSFQQASVTQLQNQIGSLSGVSLNEEAASLETLEQAYQAASK 450

Query: 464 LIMFTDKMLQTLLEG 478
                  ++   L  
Sbjct: 451 TFTVLSNVMTAALNL 465


>gi|293395583|ref|ZP_06639866.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582]
 gi|291421902|gb|EFE95148.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582]
          Length = 411

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 110/476 (23%), Gaps = 70/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          +N 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATAGFKSGSVSFADMFAGSQVGLGVKVAGITQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 + + A+        F  +++                 + +        N+    
Sbjct: 62  NGGTTTSTNRALDVAITENGFFRMQD------SDGGIFYSRNGQFKLDENRNLVNMQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+        I   + N +   S   V N        
Sbjct: 116 LTGYPAAGTPP----------TIQQGADPVPLSIPEGMMNAKSTTSGSMVANLKSTHSVP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +                              N        +  T ++++    N      
Sbjct: 166 ANG------------------------TFDPNKSDSYNYVNTITTYDSLGNAHNVNAYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  ++ +    DG V  +         K  +L       +    +              
Sbjct: 202 KTADNKWDVYTQDGSVTGAPAA------KAGSLNFNASGALTETLDA------------- 242

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                   Q   + S  +   +      
Sbjct: 243 ------SGVATADFNLTIPMSAKDGAPAQNFTLSFAGSMQQNVGSDSVSKVAQNGYTAGE 296

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +N   +     ++  Y +   +      +A  +    L     N   W E   S    + 
Sbjct: 297 YNNFQIEKDGTVVGIYSNQQKQVLGQIVLANFSNPEGLASKGDNV--WQETGASGQPRVG 354

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F +++        V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 355 TAGGGGFGNLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 410


>gi|117621121|ref|YP_857337.1| flagellar hook-associated protein FlgK [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562528|gb|ABK39476.1| flagellar hook-associated protein FlgK [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 666

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 119/367 (32%), Gaps = 7/367 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT--QRSENKN 61
             +     +      +   +   NI N +++ YVR  T+   +   +             
Sbjct: 3   SDLLGIGTSGVMAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNANGLGTGDMLTERVINA 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   +SA           A  + +  D   +NS    IS   +   + ++  ++ 
Sbjct: 63  YAQGEVRRDTSAFYASSTRYQQLANTDSLLGDT--SNSVGAAISSYFEGFHTANEAPADI 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              KT +     +V  F+T + ++ K     +  I  E   +   ++ +  +N AI    
Sbjct: 121 SGRKTTLSQLSGMVNRFHTLSAQLDKQTDTINTTIGDEAKRVNSLINSINDLNQAIIRTQ 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +  +     DQRD  ++++SE + I T+ ++N  M+V  S G +L              
Sbjct: 181 GTPEENLMLFDQRDEAIRQLSEKMEIRTVPQDNGSMLVNMSTGHSLVLNGSVAQLSVVPG 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           +         + ++         +    G +  L   R+  +   + +L ++A  +  + 
Sbjct: 241 NPDAREP--ELQLNMDPNKITLNNKDIGGGLGGLFSARND-LEPSKRELGQLAAAMADAM 297

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           ++++ +  + +N  G  +            Q                + +       +  
Sbjct: 298 NQQNRLGMDLDNELGGDLFSLGSSDGLAYSQNTGSGAAKVSFVPGKGTEVTTFDYEVQFS 357

Query: 362 LWNVKNL 368
                 +
Sbjct: 358 SATGYEV 364



 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 54/212 (25%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                      +S+ P     +          ++                          
Sbjct: 455 TNTGAGSGFGTNSLNPASPQVVKIDGSGNYQVYAADGTTLIGVAPASSKGQNLMAALESP 514

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +  T    P Y  + +   +                    L      + +     
Sbjct: 515 LGGPKVYATPAQTPGYEFSITGKVEAKDSFTLSYNTDGFADNANGLALADLQNKDLVRKS 574

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                 N  +T  E   + +  +    S +       +         + +  GV+L+EE 
Sbjct: 575 SNAGTSNDKMTFNEAYSSLVTGVGNTASQAKSQLKADETKLTQSRGIFESVSGVSLEEEA 634

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + LI+ +QSY  S +++     +  TLL  V+
Sbjct: 635 ANLIRYQQSYAASAQIVSTAKTIFDTLLSSVR 666


>gi|156934440|ref|YP_001438356.1| flagellar hook protein FlgE [Cronobacter sakazakii ATCC BAA-894]
 gi|156532694|gb|ABU77520.1| hypothetical protein ESA_02271 [Cronobacter sakazakii ATCC BAA-894]
          Length = 409

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/476 (11%), Positives = 115/476 (24%), Gaps = 72/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   AFSQAVSGLNAASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D V       +        F  L +                 + +   +S   N+    
Sbjct: 62  GDGVTTNTGRKLDVAISQNGFFRLLD------SNGGVFYSRNGQFKLDEKSNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +           +Q                   I L I   +   S+ T  N  +   ++
Sbjct: 116 VTGYPATGTPPTIQQGAD--------------PIPLTIPTAQMPASQTTSANFVMNLNSS 161

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               A    D  +      S  + +   + N +++ +Y                 +  ++
Sbjct: 162 DDVPAQSPFDPANSSTFNKSVPLTVYDSLGNEHNLKLYY---------------VKTADN 206

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                 ++              +    G + ++     +        +  +      +FS
Sbjct: 207 QWDVYNNDTSVSGSTPTKLTSLTFSDSGALTSITNAAPAGSQQVPISVASLNGSAAFTFS 266

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                   Q       L    +  K   
Sbjct: 267 MNLTGTT--------------------------------QQNSGANVLLTSNQNGYKPGD 294

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     L+ +Y +  ++      +A       L     N   W     S    L 
Sbjct: 295 LVGYQVNEDGSLVGNYSNEKSQLLGQIVLANFANPEGLSSQGDNV--WSASTASGVALLG 352

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 353 SAGTGNFGKLTSGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 408


>gi|323967017|gb|EGB62443.1| fagellar hook-basal body protein [Escherichia coli M863]
 gi|327253475|gb|EGE65113.1| flagellar hook protein flgE [Escherichia coli STEC_7v]
          Length = 401

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T                
Sbjct: 160 SSDPLPSVKGFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPK 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++S+    +  G I                              
Sbjct: 220 GTANPATTLLFNANGVLTSDPTKDITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|153951647|ref|YP_001398768.1| flagellar hook-associated protein FlgK [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939093|gb|ABS43834.1| putative flagellar hook-associated protein FlgK [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 608

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 148/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + +    +       L + S+ +   + + S           D  N      +     +
Sbjct: 61  AIESIVRLHDEYSYYKLKSASNQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + +   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINKIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A S   A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALSTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSVVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKISGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N  + A
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMNDIMRQINANTDDNNDHNA 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NNDVDDHINASFNYDAKTGDGLFQINAKSGYKVAIEDKGTNFAGAFSIGGFFSGTDASDM 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   +++ GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510



 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 127/392 (32%), Gaps = 6/392 (1%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
             ++ D+  + + T    +   S+E +S    + I    +  + ++  ++++       +
Sbjct: 222 NEINQDNRLDTTITDPGHQYNLSIEGFSV--VDGINFHPLKLDYDDKNKSYSIYYETPDE 279

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              D   +I       +  L          K++        D LD     +   +  +  
Sbjct: 280 KVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINETNNLYA 339

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           S+   +     +    G        R I     +      + +      + +  N     
Sbjct: 340 SSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITIDVNTTMND 399

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              +I A     +             A     + +       N+++   + I D   +  
Sbjct: 400 IMRQINANTDDNNDHNANNDVDDHINASFNYDAKTGDGLFQINAKSGYKVAIEDKGTNFA 459

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G   +       +   S L D  +V          +    D+ N       +   
Sbjct: 460 GAFSIGGFFSGTDASDMKVKDSILNDPSTVRAS----SNGVDSGNDMANKIIQLQYEKVN 515

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           F    G   N+T+ EY R   G +  +  +++ ++  ++ ++N +   Y +  GVN  EE
Sbjct: 516 FYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQSKSGVNTNEE 575

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L  LI+ + SY  + K++   D+ML TLL   
Sbjct: 576 LVALIQYQSSYGAAAKIVSTVDQMLDTLLGLK 607


>gi|27380964|ref|NP_772493.1| hypothetical protein bll5853 [Bradyrhizobium japonicum USDA 110]
 gi|27354130|dbj|BAC51118.1| bll5853 [Bradyrhizobium japonicum USDA 110]
          Length = 627

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/453 (12%), Positives = 143/453 (31%), Gaps = 18/453 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-----TMTTISPENVTVVTQ 55
           M L +    A +         + +  N+ N+    YV +        T            
Sbjct: 1   MGLSSALASAMSGLRANQAALSIVSSNVANSQTPGYVVQTPNQIEVTTGDFGSTAMTTGV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             E  +     L   +   G    + +     + +      + +    ++K   +L++ S
Sbjct: 61  SRELDSYVLNQLRTETGGSGYADQMANILKQLQSVYGTPGNSGTLETALNKFTTALQALS 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +          +  A+ + Q  N + + +Q +R++ ++++          + ++  +N 
Sbjct: 121 TSAGASSAQTVALGAAQALAQQLNVTTKGIQSLRSNVEQDLGTSAQQANASMQQIADINT 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV---- 231
            ++  +A+   A   +DQRD  +  +S+ + +      +N   +YT+ G  L        
Sbjct: 181 KLQGLSANDPSAATLMDQRDQAINTLSKYVDVRVTTDGSNQANIYTTTGIQLVGAGLASQ 240

Query: 232 ---------PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                         ++   + +     N    +G  V     + V  G+I A L++RD  
Sbjct: 241 FTFASAGALSATSLYDMDPAKSGVGALNIRLPNGSQVDVVANNVVSSGQIAADLKLRDQT 300

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   QNQ+D++A  +  + S+K          P  F  D                   N 
Sbjct: 301 LVQAQNQIDQLAATMSSALSDKTTAGSTVSGPPAGFDMDLAGAAPGNTVNITYTDTTTNT 360

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q +     + D  ++  +   N   +    +         +        + ++ +     
Sbjct: 361 QRQVTLVNVTDPAALPLQNATNANPMRIGVNFSGGMGAIASALNTALSGSHLSFSAAPSP 420

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               ++   + N   +           + ++  
Sbjct: 421 ATATTLRVTDDNTGLAKVNSSSISKTISSLTSG 453



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 97/331 (29%), Gaps = 1/331 (0%)

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
           +R     + + +I  L   +S             +      D           ++     
Sbjct: 296 LRDQTLVQAQNQIDQLAATMSSALSDKTTAGSTVSGPPAGFDMDLAGAAPGNTVNITYTD 355

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           +T        +V  +D   L      + N  ++                  +S +  S  
Sbjct: 356 TTTNTQRQVTLVNVTDPAALPLQNATNANPMRIGVNFSGGMGAIASALNTALSGSHLSFS 415

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                     +R +       +++  +     S               G  +  G     
Sbjct: 416 AAPSPATATTLRVTDDNTGLAKVNSSSISKTISSLTSGNPQLAVFTDGGQALYTGAITAS 475

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                G++  I VN Q  S+P+ L    +       +          + +   S++    
Sbjct: 476 GSQMTGLAGRIAVNTQLVSDPTRLSVYNTSPVTPAGDTTRSDYLYSQLTNAVFSYSPTTG 535

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
               A      ++  Y +  +       + +  L     VV + +   +++T  VNL  E
Sbjct: 536 LGS-ANQPFTGSVSNYLQQFLSIQGNAATQATQLQQGQSVVVSTLQAKFNSTSSVNLDSE 594

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +S LI+++ +Y  +  ++     M+ TL++ 
Sbjct: 595 MSNLIQLQNAYAANAHVMSVVQSMMNTLIQA 625


>gi|205373385|ref|ZP_03226189.1| flagellar hook protein FlgE [Bacillus coahuilensis m4-4]
          Length = 426

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 123/478 (25%), Gaps = 52/478 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   NA  +   I  NI N +   + +                        
Sbjct: 1   MLRSMYSGISGMKNAQTKLDVIGNNIANVNTYGFKKGRVTFQDLMNQTMSGATTPTENR- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                        +Q  L    A  +++S       +       +        +N   ++
Sbjct: 60  --------GGQNAKQIGLGGTIASIDIISTQGSLQTTGRSLDVAISGDGYFVVRNGQNEM 111

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +      + +   +Q  +ADA+  I+          S+ T+   +    T 
Sbjct: 112 YTRAGNFYLDSNGSLVDGNGNLIQGYQADANGVIDYGGMTDIVIDSDSTMAPRSTSEVTF 171

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           + +                +        V           D       +         NS
Sbjct: 172 NGNLKASAPIYDATNATTQAATADGRVTVD------YSVKDSLGSDIPLKVTFTKTASNS 225

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +  T            ++    S    GK+                              
Sbjct: 226 WDTTISYTDTLGATQTITGPALSFSSDGKL------------------------------ 255

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                      +  + +     +      Q I        Q+ S+ S   +  + + +  
Sbjct: 256 ----DPATVTTLANINLPVNNINPGAVSPQAIDIDFAQITQFDSSTSANINTINGNSEGY 311

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                ++   ++   Y +   +      +A  +    LL    N+      N S   +  
Sbjct: 312 LESFTISSSGEINGIYSNGEVQAISQLVMATFSNAGGLLSQGGNTFT--ASNNSGLPNYG 369

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + ++     I         V+L EE + +I  ++S+  + ++I  +D++LQ L+   +
Sbjct: 370 IANEG-RGAIQSGSLEMSNVDLSEEFTEMITAQRSFQANTRIITTSDEILQELVNLKR 426


>gi|261253614|ref|ZP_05946187.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891]
 gi|260937005|gb|EEX92994.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891]
          Length = 434

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/484 (8%), Positives = 116/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             A +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YVALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                     + ++Y
Sbjct: 63  VAQ---QFHEGSSIYTNNPMDLRIGGTGFFAVAKDRLTPTSNE---LTRNGAFHLNKDNY 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L    ++     V ++               +   + I        +   + 
Sbjct: 117 MVTANDEFLLGYQVNKDTGDVLSY---------------EPSPINIPKEFGKPKQTANIE 161

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +      +       D  D      S    I   +  +  +  Y     T   T    
Sbjct: 162 VGVNLPAGGELKDPALFDYSDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTY 221

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                       + +            +       G + +L                   
Sbjct: 222 YTVTDSAGEKPLNITGGDATSPTGHIGHTMKFNNDGTLASL------------------- 262

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                          N  + P    A+ ++     + Q +S  +    Q+ +     +  
Sbjct: 263 -----------NNGQNIVSEPLGTGANPVELNGADVNQTLSFGLQDATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 EDGATTGFLTKVDFDENGSVLGTYSNGENIILGRVAMVRVANEQGLDK--KGGTQWDSTQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        ++  F  IS        +++ +EL  LI  ++++  +++ +   ++  Q 
Sbjct: 370 FSGDKIWGESNKGSFGSISSGTLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQTQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|148358806|ref|YP_001250013.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby]
 gi|296106851|ref|YP_003618551.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy]
 gi|148280579|gb|ABQ54667.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby]
 gi|295648752|gb|ADG24599.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy]
          Length = 437

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/482 (10%), Positives = 125/482 (25%), Gaps = 58/482 (12%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQR 56
           FN A +    +++    I  NI N+    +            +             V   
Sbjct: 3   FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +++     L   ++ +        F  L +                 + + + E+Y  
Sbjct: 63  RVHQSFATGTLSTSNNTLDLAVNGSGFFILSD-------QGAKIYTRAGQFKLNNENYIV 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N +   L   + D+   +      ++ +++   A+        +S      S+    N  
Sbjct: 116 NANNQRLTGLLTDSNGAITG----ASGDLRINTANITPRASSNVSVGVNLNSQSKAPNV- 170

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                                   +      S    N     +Y S G +   ++     
Sbjct: 171 ----------------------DWVGGASPASDTYNNVTSSTIYDSLGNSHVLSMYFIHA 208

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                + +  + S     +   V+    +      + A            QN  +     
Sbjct: 209 DPTALAGSPNAASPAGTENQWYVAFQIDNQNVPPNVGA------------QNTNNLFRAN 256

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                S       ++  +P   I       +      ++  +  + Q+ S  +      +
Sbjct: 257 FNSDGSFAGVFDTSNAALPNNLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNN 316

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     ++     +   Y +  +       +A      +L         W E   S
Sbjct: 317 GYTTGSLAGLDIDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGN--TSWAETTSS 374

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          ++        V+L  EL  LI  ++++  + + I   D + QT++
Sbjct: 375 GQPLVSAPGSGGLGLVNSGRLEESNVDLTGELVKLISAQRNFQANAQTIRTGDAITQTII 434

Query: 477 EG 478
             
Sbjct: 435 NI 436


>gi|207108518|ref|ZP_03242680.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 267

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------TTISPENVT 51
            +L+  N +                NI NA ++ Y R+  +          T      V 
Sbjct: 3   GILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V      +           +          S           D    S    +    +S 
Sbjct: 63  VEAIERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYF-PDIDEASLFTDLQDYFNSW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN  +    + +    E +  N   +   +  ++  A +E++  I  +    S++ 
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181

Query: 172 VVNDAIKFKTASK--HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +N  IK    +K    A++  D+RD L   + E++G +    +     +   D     E
Sbjct: 182 QINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDE 241

Query: 230 TVPRDI 235
           +   +I
Sbjct: 242 SYNLNI 247


>gi|303249022|ref|ZP_07335267.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ]
 gi|302489608|gb|EFL49548.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ]
          Length = 519

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/520 (9%), Positives = 122/520 (23%), Gaps = 46/520 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSEN 59
           +      +   + S   A+   N+ N     Y     +                   +  
Sbjct: 2   SAIWTGVSGLLSYSTGIANTGNNLANTGTTGYKSSRLLFADMISEMAGGTSDGSQIGTGV 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISKLRDSLESYSKN 117
           +     +  +  S I   + +      +           + +           +  Y   
Sbjct: 62  QVGSVSMTTSTGSPISASQSMDMAINGERGYFVVKKPGTDKTYYTRDGAFNFDVNGYLTT 121

Query: 118 LSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
            +   +    +D  A    +   T   +V       D +I+   S  +   +   + N  
Sbjct: 122 ETGLNVQGWAVDQTAVTAAKRTGTVLSQVPTTGTLTDIQIKDYTSAAQATSAVTMITNLD 181

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIS--------------TIVRNNNDMVVYTS 222
            + +  +      +           S  I  +              T         V   
Sbjct: 182 GQTEPGTLDATDPYFSMFKRYNADNSPPISNTAYSAPIKVYDSEGGTHTLTTYYSKVSDE 241

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV------------------VVSSNQG 264
           +G   +E +      +  +S T  +    + + G                          
Sbjct: 242 NGKEYWEYMVTMPPEDDGSSTTSGTSKAGVLMIGTLTFSAQGELENETAFTPSGSDPTDL 301

Query: 265 SAVPKGKIKALLQ----IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           ++  +  +                   N L     V     S  +     S       I 
Sbjct: 302 ASWTQASLDGSGNPKLNATFRSASNSSNILSSQPIVYKDGLSSSNASWSASAPATAADIG 361

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                                  Y ++                   ++     +   + +
Sbjct: 362 TLTSANAGFNSANTKNAATCTSNYSTSSYTASSTQDGYASGTLLSTSVDENGVISGTFSN 421

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                     +A       L     N +       S    L   +  VF+ +S     + 
Sbjct: 422 GQTIELFVVGLADFVNPTDLYREGNNLLS--ATKESGDASLGRANSGVFDSVSGYTLESS 479

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++  E+  LI +++++  ++K++   D+M+Q  LE  +
Sbjct: 480 NVDMATEMVNLITLQRAFQSNSKVVTTADEMMQKALEIKR 519


>gi|323976551|gb|EGB71639.1| fagellar hook-basal body protein [Escherichia coli TW10509]
          Length = 401

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T                
Sbjct: 160 SSDPLPSVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPK 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++S+    +  G I                              
Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|83816398|ref|YP_446735.1| flagellar hook-associated protein FlgK [Salinibacter ruber DSM
           13855]
 gi|83757792|gb|ABC45905.1| flagellar hook-associated protein FlgK [Salinibacter ruber DSM
           13855]
          Length = 600

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/462 (11%), Positives = 140/462 (30%), Gaps = 22/462 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----------------RRDTMT 43
           MS+ ++F+          ++  +  +NI NA+++ Y                    +   
Sbjct: 1   MSVNSLFDIGSTSLRAVGEKIDATSQNIANAESEGYRRRRVSLSSRSVAATGLYASNGAQ 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
            ++   V V         M     +   S+    R       + E   A    + S +  
Sbjct: 61  DVTSSGVGVEQFERVRDGMLVGARNEARSSESAAREEGRVLGVLEGALA-TDTDASLSAS 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +  L D   + + N     + ++V+  A ++   F    + + ++ +   K +   +   
Sbjct: 120 LQGLADGFSNLANNPESQGVRESVLGRARQLTDTFGRLDQRLGELTSSTTKALASNVEKA 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L ++  +N+ I+   A     +   DQRD  ++++S+++ +      ++   + T D
Sbjct: 180 NGLLDKVASLNEQIESARAGGSPDYAAEDQRDQTVKELSKLLPVEAQENRSDGYTL-TVD 238

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G T+ +         +  +             GV     +      G    LL    +  
Sbjct: 239 GMTVVQGDDATTLSTENKNDPSKPTRVEFGDTGVAFDPGEEGGGEIGAQARLLNDTLTGK 298

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              Q++LD +A  ++   +       +     G             +   +     +   
Sbjct: 299 QSVQDRLDTLADSVVEKVNTAHRKGADQNGDTGENFFVDKSRTAGNIELNVDGPKDIAAV 358

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                       +       +  + +G  ++ +      + +     V+ I+ +  L   
Sbjct: 359 ATPALGTPEGNETAVTIGQGDFGDSSGAGNIEDRLTVGPDGSASTVEVSSISPDGNLPGG 418

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                  +    + +           N    S S   GV++ 
Sbjct: 419 VEGGTFDITVEDNANTGELDF---TINRPDGSTSAQTGVDVS 457


>gi|54308097|ref|YP_129117.1| flagellar hook protein FlgE [Photobacterium profundum SS9]
 gi|46912523|emb|CAG19315.1| putative flagellar hook protein FlgE [Photobacterium profundum SS9]
          Length = 435

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/486 (8%), Positives = 117/486 (24%), Gaps = 66/486 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
            FN + +    + +   +   NI NA+   +                    T +   V  
Sbjct: 2   GFNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +      ++ +  +     F A+ +      + N            + +
Sbjct: 62  SVVAQ---QFHEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNSN---LTRNGAFHLNKD 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    +D   + V ++   A +V            ++I            
Sbjct: 116 NQIVNSEGQYLLGYGVDQETDQVTSYEPQAMKVPDQFGQPRASTSIDIG----------- 164

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
               +    +++       D  D      S  + +   +     +  Y     +      
Sbjct: 165 ----VNLPASAEAKDATLFDFNDSNSYDKSTSVSMYDSLGQPYKLSTYYVKDNSAPNRWS 220

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         + +N           +       G +  +                 
Sbjct: 221 VYYTGTDATGEKPINITNGGTTAANGHQGSTLDFNTDGSVAQINN--------------- 265

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             + ++      D    +              D   +                      +
Sbjct: 266 -GQPILSEALGADGAGLDLNGADETQTLTMNFDSPTQYAAPFEIR--------------K 310

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              + +        ++     ++  Y +  N       +  +     L+   +    W  
Sbjct: 311 FSENGATTGYLAKVDIDAKGSIVATYSNGENVTLGRVGMVRVANEQGLVS--KGGTQWAT 368

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +      SQ  F  +         +++ +EL  LI  ++++  +++ +   +++ 
Sbjct: 369 GQDSGAAIWGEASQGAFGSVKSGTLEQSNIDMTQELVDLITAQRNFQANSRALEVDNQLQ 428

Query: 473 QTLLEG 478
           QT+L+ 
Sbjct: 429 QTILQI 434


>gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae
           SmR1]
 gi|167731109|emb|CAP19667.1| flagellar hook-filament junction protein 1 [Herbaspirillum
           seropedicae]
 gi|300074143|gb|ADJ63542.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae
           SmR1]
          Length = 778

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 136/420 (32%), Gaps = 15/420 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVV 53
             +F+  Q+    A    A+   NI N     Y R++ + + +               V 
Sbjct: 3   TNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQVN 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             +    +  +K   A +S      L   +  + ++ +         +  +     ++++
Sbjct: 63  EIKRVYNDFLNKQ--ALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N +     ++V+  A  +V   ++   ++    A  + +I   ++++  F  +++ +
Sbjct: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180

Query: 174 NDAIKFK--TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           N AI     T      +D LDQRD ++ ++++++ I+T+ ++   + V+   G +L    
Sbjct: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQL 290
                    +   V+       I G   S+   S     G +  LL+ R   +   QN L
Sbjct: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A  +  +F+++  +  +     G  + +               T         +   
Sbjct: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             D         +    L+     I                 G                +
Sbjct: 361 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY 420



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/394 (8%), Positives = 79/394 (20%), Gaps = 6/394 (1%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L      +       +F  L +           P         +  +     +  +  
Sbjct: 357 SALTTSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAA 416

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
                           S              I   I+      + +   N      + + 
Sbjct: 417 GNTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTS 476

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN------FE 238
            D+  +     V      +      +  +          G T+        +      F+
Sbjct: 477 LDSSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFD 536

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +  T+TS      + G   + ++ +  P    K    I    V               
Sbjct: 537 YKSGMTITSGGVTYALTGSPAAGDKFNFAPVSANKGTATISTGSVTPAYLTTTTPLTKPT 596

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                           P +    G     +     I+           +   +       
Sbjct: 597 TLTYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAI 656

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                N        +      +           A      +        +  +    ++ 
Sbjct: 657 SGQPGNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEI 716

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
           +  +   +     I     +  GVN  EEL+ +I
Sbjct: 717 NVTNTAEKARLTAIQNQQQSESGVNQDEELAHMI 750


>gi|238752866|ref|ZP_04614331.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC
           43380]
 gi|238708905|gb|EEQ01158.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC
           43380]
          Length = 411

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/477 (10%), Positives = 108/477 (22%), Gaps = 74/477 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
            F+ A    +  ++Q ++I  NI N+  K +    T          P  V V        
Sbjct: 2   SFSIANTGLSAVTEQLSTISNNIANSATKGFKASRTEFASMYAQSQPLGVAVSGVSQSIN 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              D  +    +A+        F  +K          +                  N S 
Sbjct: 62  K--DGSIDRTGNAMDLAIAGNGFFVVKN------SNGDEAYTRAGMFTSDKSGMLVNGSG 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D A  +          +  ++           + +    +        +   
Sbjct: 114 MKLQGYPVDAAGNIQTGI------ISDLKVSTAGLPAKASTQIDFMANLPAGAAVPLAAF 167

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             S  D++        +   +     ++     N                    +     
Sbjct: 168 DKSNPDSY-NNMSMSTVYDSLGREHAVAQYFVKNAPPPPPGPLAPPAPIVSEWTVYTAID 226

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 + S+ +  D   V +   +    G                              
Sbjct: 227 GVIPANNPSHTLVFDVSGVLTLGNNMAISGGYG--------------------------- 259

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                            I        Q+ SN     +       
Sbjct: 260 -------------------------SPGAAPYSIDVDYAGTTQFDSNFLPTTNKSDGYTS 294

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              N + +     +   + +          +A       L   A+N   W   ++S +  
Sbjct: 295 GSKNGERIENDGSVYATFSNGERMLQGRLVLANFANPNGL--AAQNGTTWSATSKSGAAL 352

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           L      +   I         V+L  EL  L+  +++Y  + K+I   D M+  L +
Sbjct: 353 LGEAGSGMLGSIEAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 409


>gi|118474675|ref|YP_891310.1| flagellar hook-associated protein FlgK [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413901|gb|ABK82321.1| flagellar hook-associated protein FlgK [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 617

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/407 (12%), Positives = 120/407 (29%), Gaps = 26/407 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +        +  N A  Q     +NI N ++  Y R+  + + +              
Sbjct: 1   MGIFDSLYTGASGLNAAQLQIQVTGQNITNINSDYYTRQRVVQSATTPLHTSPGDVGMGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + T    +       L   ++        Q            D  +      I     +
Sbjct: 61  RIDTIIRIHDEFTFDKLKTATTNKENTAYKQQVLQEIAQRF-PDLKDTGLLKDIENYFGA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
             +++ +  E      +++    +    N ++ +++ +  + +++++L +  + R   ++
Sbjct: 120 WNNFASHPYESAQKTNLLNLTSTLTNRLNDTSSQLKTVHNNINEQVKLAVDEINRIGKQI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS------- 222
             +N  I+     +  +A+D  D+RD L   ++ I+ IST   + +    +         
Sbjct: 180 ADLNAQIQKVETGTTQNANDLRDKRDQLELTLANILNISTFKNDISSNSTFGGTLTDQGR 239

Query: 223 ------DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                 DG TL + V         N        N  +        +  S +  GK+ A+L
Sbjct: 240 NYNLNIDGITLIDGVNFHPLTLDTNGNKDGFT-NIYYELNDGTRVDMASKINSGKLGAML 298

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
            +R   +       D M      +            N      A       +      + 
Sbjct: 299 DLRGRTMGDNGEVKDGMITEFRNNLDTFAKTLIIQTNNIYASAAQEGMSSTDLSQMKPNT 358

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
           T+    Q   + +F     +     +            ++      +
Sbjct: 359 TLQNFDQNVQSGNFDVIIYNSQGVEVARKTINVNSSTTMDDTKQGNS 405



 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/479 (12%), Positives = 147/479 (30%), Gaps = 20/479 (4%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
            N+ S Q  ++  NI N        +  +  I+     +    ++ + +        +  
Sbjct: 147 LNDTSSQLKTVHNNI-NEQV-----KLAVDEINRIGKQIADLNAQIQKVETGTTQNANDL 200

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
             ++  L+   A    +S   +  +S + +   L D   +Y+ N+    L   V  +   
Sbjct: 201 RDKRDQLELTLANILNISTFKNDISSNSTFGGTLTDQGRNYNLNIDGITLIDGVNFHPLT 260

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
           +  N N        I  + +    +++++         +++   +    +       + +
Sbjct: 261 LDTNGN--KDGFTNIYYELNDGTRVDMASKINSGKLGAMLDLRGRTMGDNGEVKDGMITE 318

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
               L   ++ + I T     +      S            +     N  +   +     
Sbjct: 319 FRNNLDTFAKTLIIQTNNIYASAAQEGMSSTDLSQMKPNTTLQNFDQNVQSGNFDVIIYN 378

Query: 254 IDGVVV---------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
             GV V         S+          I                  D           ++
Sbjct: 379 SQGVEVARKTINVNSSTTMDDTKQGNSIVGDFNSDTDDNNNGNLNDDVNDFFTAKFNYDE 438

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL-- 362
               G+    P     +    +++K                 + S ++   S++      
Sbjct: 439 KTGLGHLSFSPLFSSGEYTMAIEDKGTNFPGVFGMSQFFEGDSASNIKIESSLASDTSKI 498

Query: 363 -WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             N   + G   + N   +   ++  F    G   + T+  Y R     +       + L
Sbjct: 499 KGNKAPVDGDNSMANAMINLQYQSLNFYANDGTIRSETITGYYRYLTTDIASKTESVNAL 558

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +  ++  ++  + +  GVN+ EEL  LIK + SY  + K++   +KML+TL+   +
Sbjct: 559 NNTNLSLYKSVNAEFQSISGVNMDEELGNLIKFQSSYGAAAKIVTTVEKMLETLIGMKQ 617


>gi|302185583|ref|ZP_07262256.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae 642]
          Length = 445

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 105/478 (21%), Gaps = 40/478 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60
            FN   +    A++       NI N     +                      +  S   
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRIEFADQYAQSIRGTSGGTSVGSGVT 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   +  S                      +  +S            + Y  N S 
Sbjct: 62  TAAVSQQFSQGSLTTGTGNSLDLAINGNGFFMLSNKGDSLYTRAGAFHTDKDGYVVNSSG 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D    V+                     +L + +  +  S  +++ +     
Sbjct: 122 MNLQGYNVDANGTVM----------------VGSSGDLRVDSSNQLASPTSMITNTANLN 165

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + S        D  +      +    +     N + M  Y                    
Sbjct: 166 STSAIPTVTPFDATNSKTYNDTYSTTVFDSQGNEHRMESYF-----------AKNGTNSW 214

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
             Y++    N       V  +N  +    G +        +      N           +
Sbjct: 215 TMYSLIDGRNISNPASTVPDANNLTFDSSGSLIINTGTTPTSPSPSANVAVNADGTFKVT 274

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                   G   +           +    +  GI   +  + Q  S         +    
Sbjct: 275 NWVPAIQTGTGNSAT------WGPNGAAGVASGIQLDMTASTQTASATGRSAQAQNGYAA 328

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++     L   Y +  +K      +        L         W E   S    
Sbjct: 329 GQIKDMSVDASGKLFASYTNGQSKVIGQVSLTSFANVQGLAP--AGGTNWRETFSSGIPG 386

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +++        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 387 TGAPQSGTLGYVTGQALEESNVDLTLELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 444


>gi|296103611|ref|YP_003613757.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058070|gb|ADF62808.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 399

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/473 (11%), Positives = 116/473 (24%), Gaps = 76/473 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++  +  + A++    +  NI N+    +              T +            
Sbjct: 2   GFSQGLSGLSAAAKALDVVGNNIANSQTVGFKAGSVSFADIFAGSTGMGV---------- 51

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                               + +        N +    +                   G+
Sbjct: 52  ----------------QVAGVSQNFGDGALMNGASALDMGISGRGFFRMVDEAGSVFYGR 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 ++     N +           D  I          +    +   A    + + +
Sbjct: 96  NGQFEQDQNGFIVNKTNGLFLTGYQATDGVINPGAQVGPIRIPTDDMPPAASTKGSVAGN 155

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              D             ++I  +     +N          T  +++      +    +T 
Sbjct: 156 LKSDD------------KVIPATPAFDPDNADTYNYVSEVTATDSLGNKHAIKVYYVHTA 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             E                              +DS  P       E             
Sbjct: 204 EGEWKA-------------------------HAQDSTAPGAAGGWSEQTLKFGTDGKLTA 238

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           P+  N +       A    +LD               Q  S+     D         +N 
Sbjct: 239 PVTLNIKGAAYNGSAALDLNLDLN-----------ITQNASDTQVKLDEIDGQAPGKFNS 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             ++   ++I  Y +   +      +A       L +   N   W E ++S    L    
Sbjct: 288 YQVSDTGEVIAIYSNGKRQTVAQVVLADFANAGGLEQQGNNL--WAETSQSGQPFLGTSG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  IS +   +  VNL +E+  +I  +++Y  +++ I    ++LQTL+  
Sbjct: 346 SGSFGDISGNMLESSNVNLGDEMVNMIVYQRNYQSNSQTIKTQSEVLQTLVNL 398


>gi|145298497|ref|YP_001141338.1| flagellar hook-associated protein FlgK [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851269|gb|ABO89590.1| flagellar hook-associated protein FlgK [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 666

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 119/384 (30%), Gaps = 7/384 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--TISPENVTVVTQRSENKN 61
             +     +      +   +   NI N +++ YVR  T+            +        
Sbjct: 3   SDLLGIGTSGVLAQQRLLQTTSNNIVNVNSQGYVRERTLIYTNSVGMGTGDMLTDRVINT 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   +SA           +  +++  D   +NS    ++    +  + ++  ++ 
Sbjct: 63  YAQGEVRRDTSAYYASASRYEQLSNTDILLGD--ASNSVGAAVTSYFKAFHTANEAPADI 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              KT +     +V  F+T + ++ K     +  I  E   +   ++ +  +N AI    
Sbjct: 121 AGRKTTLSELSGMVNRFHTLSAQLDKQTDTINTTIGDETKKVNNLINSINDLNQAILRTQ 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +  +     DQRD  ++++SE + IST+ + N  M+V    G +L              
Sbjct: 181 GTPEENLMLFDQRDEAIRQLSEKMEISTVPQANGSMLVNMRTGHSLVLNGGVAQFSVVSG 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           +         + +     + +       G +  L   R+  +   + +L ++A  +  + 
Sbjct: 241 NPDSRESELQLTMGANKTTISD--KDIGGGVGGLFSARND-LEPSKRELGQLAAAMADAM 297

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           + ++ +  + +N  G  +            Q                + +       +  
Sbjct: 298 NRQNRLGMDLDNELGGDLFSLASSDGLAYEQNTGTGAAKVSFVPGKGTEVTTFDYEVQFS 357

Query: 362 LWNVKNLAGYPDLINHYCDSFNKN 385
                 +       N    +    
Sbjct: 358 SATGYEVFSLDKDGNRTSLATGST 381



 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 55/211 (26%)

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                     +++ P     +          ++                           
Sbjct: 456 NTGTGSGFGTNTLDPAVPQVVKIDGSGNYEVYAADGTTLIGVAPASSKGQDLMASIESPL 515

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               +       P Y  + +                        L      + +      
Sbjct: 516 GGPKVYADPTQAPGYEFSITGTVRANDSFTLSYNQDGFADNANGLALAELQNKDLVRKST 575

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                N  +T  E     +  +    + +  L   ++   N  +  + +  GV+L+EE +
Sbjct: 576 NAGTSNDKMTFNEAYSGLVTGIGNQTNQAKTLLKANETKLNQSTSIFESVSGVSLEEEAA 635

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI+ +QSY  S +++     +  TLL  V+
Sbjct: 636 NLIRYQQSYAASAQVVSTAKTIFDTLLSSVR 666


>gi|301051140|ref|ZP_07197970.1| flagellar hook protein FlgE [Escherichia coli MS 185-1]
 gi|300297161|gb|EFJ53546.1| flagellar hook protein FlgE [Escherichia coli MS 185-1]
          Length = 401

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNKWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++S+    +P G I                              
Sbjct: 220 GTAEPAMTLVFNANGVLTSDPTKDIPPGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|283850852|ref|ZP_06368138.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B]
 gi|283573775|gb|EFC21749.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B]
          Length = 551

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/553 (9%), Positives = 128/553 (23%), Gaps = 79/553 (14%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------P 47
            L        +     S + ++I  N+ N +   +    T                    
Sbjct: 4   GLGTSMWSGVSGLLANSTKMSTIGNNLANVNTVGFKGARTDFMDLMSANIGTAAGDKQIG 63

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL-------KEMMSADDHYNNSP 100
             V V T  S   +     L   S+++        F  +             +     + 
Sbjct: 64  RGVRVGTVVS---DYSQGGLETTSNSLDMAINGNGFFMVKQKSQVGSNGKMLNTGNQTNY 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDN-------AEEVVQNFNTSAREVQKIRADAD 153
                      + Y        +    +D        A   V +    + E+Q IR    
Sbjct: 121 YSRAGNFSFDSDGYLVTPQGLAVQGWKVDQERIDAANASGTVLSQTPVSGEIQDIRLSQF 180

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK--------ISEII 205
                  S++    +  +    A     ++ +  +   +  D                 +
Sbjct: 181 TSPAKATSSVTLITNLDSDTKSASTRSASNANYYYAMTESWDGTQDPAMPSTAYSYQTTV 240

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS----S 261
            +     + + +  Y      +      +       +      SN     G   +    +
Sbjct: 241 KVYDENGSPHTLTTYYDKVADVNGKEYWEYTVTCAPNEDGRVASNGTPFGGTEAAGLLMT 300

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              +    G ++ +               D          +       N ++V      +
Sbjct: 301 GTMTFDSSGSMENMSAYTMKASNATPGDFDATQWTAADVSNGYPVFTANFKSVSNASFTN 360

Query: 322 GIKDLDNKLCQGISETICVN----------------------------------PQYRSN 347
              +  N         I                                       Y ++
Sbjct: 361 STNNPLNIALNFGISNIAGFSAGASGSSLATAGHDPANLVHFNPSTMKVNSNVTTNYATS 420

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            S +    +     L N  ++     L   + +   +      +A       L     N 
Sbjct: 421 SSTVFSSQNGYTSGLLNNVSVDADGILTGSFSNGQTQKLWALALANFTNLQGLSREGSNL 480

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                   S     +  +      IS +   +  V++  E+  +I  ++ +  ++K I  
Sbjct: 481 YA--ATLESGQGTTNRANTGSVGSISGNTLESSNVDMATEMVSMILTQRGFEANSKTITT 538

Query: 468 TDKMLQTLLEGVK 480
            D ML  +++  +
Sbjct: 539 VDSMLSEVIQLKR 551


>gi|57169005|ref|ZP_00368134.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter
           coli RM2228]
 gi|305432258|ref|ZP_07401421.1| flagellar hook-associated protein FlgK [Campylobacter coli JV20]
 gi|57019671|gb|EAL56360.1| flagellar hook-associated protein 1 (HAP1) (flgK) [Campylobacter
           coli RM2228]
 gi|304444606|gb|EFM37256.1| flagellar hook-associated protein FlgK [Campylobacter coli JV20]
          Length = 608

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/514 (11%), Positives = 145/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +             +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           TV +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  TVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRF-PDLQNTGILQDLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+     ++  ++ + ++ N +   + KI+   + +I+  +  + R   E+
Sbjct: 120 WNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKKVNDDIKNTVDEINRIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
             +N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 ATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPGH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGVNFHPLKLD---YDDKNKAYSIYYETPDEKVRDLTAKINGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPI--------------AG 309
           L +R            D ++  + + L+  A+ +I   +                     
Sbjct: 297 LDLRGRNYSKSEGKYSDGIIQGYMDSLNTFAKTMINETNNLYASSAKSSVTSDYLPGLTE 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N  N A
Sbjct: 357 DIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITVDVNTTMEDIMRQITANTDDNGNNNA 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +          +    
Sbjct: 417 NDDVDDHINASFSYDAKTGDSLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTNASDI 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   ++  GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASLNGVDSGNDMANKIIQLQ 510



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 58/137 (42%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              S+        +       ++  +    D+ N           F    G   N+T+ E
Sbjct: 471 TNASDIKVKDSILNDPSTVRASLNGVDSGNDMANKIIQLQYDKVNFYNEDGTIDNLTMEE 530

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
           Y R   G +  +  +++ ++  +Q ++N +   Y +  GVN  EEL+ LI+ + SY  + 
Sbjct: 531 YYRKLTGKIGSDGENNNVVNASNQTLYNSVYSEYQSKSGVNTNEELAALIQWQSSYGAAA 590

Query: 463 KLIMFTDKMLQTLLEGV 479
           K++   D+ML TLL   
Sbjct: 591 KIVTTVDQMLDTLLGLK 607


>gi|323705438|ref|ZP_08117013.1| fagellar hook-basal body protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535340|gb|EGB25116.1| fagellar hook-basal body protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 424

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/478 (8%), Positives = 106/478 (22%), Gaps = 54/478 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +       +   I  NI N +   +                     ++   
Sbjct: 1   MLRSMYSAVSGLKANQAEMDVIGNNIANVNTVGFKASRMTFKEIFNQTIKGASAPQDN-- 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +   Q  L  +  ++  + S            +S   +     +   +   
Sbjct: 59  ------GGGTNPQQIGLGVAIASIDTLFSNGGSQRTDNPTDLSIDGNGFFIVNNGGANLY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                               + +  I  D         +     +   +  + A      
Sbjct: 113 TRAGNFSFDSNGDLVTPDGYKVMGWISQDGKTVNTDTGNLSPISIKNWSSTSPASTKTIQ 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +    LD    +   +S  + I      ++   +  +             NF+  N 
Sbjct: 173 LGGN----LDAGTSVGSSVSYNVTIYDSQGGSHVATIQFTKQDNAGNWNATITNFDGTNL 228

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +     F    V+                                           
Sbjct: 229 STPVTIGTITFDSSGVI----------------------------------------QQP 248

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                      V    +     +        I+  +     Y +           +    
Sbjct: 249 APPASPVGIFTVGVSSLPITNTNATLGDGTNITVDLSKLTMYSNPTDIRELSKDGNSAGS 308

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               N+  Y  +   Y +   +      +A       L +       ++    S    + 
Sbjct: 309 IESINIDQYGVVSGIYSNGRTQVIGQIALADFQNTQGLEKVGNTM--FINTVNSGDPMIG 366

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +      I         V+L  E + +I  ++ +  + K+I  +D++LQ L+  ++
Sbjct: 367 AANTGTRGTIDPGTLEMSNVDLANEFANMITTQRGFEANAKVITTSDEILQDLVNLIR 424


>gi|148256817|ref|YP_001241402.1| putative flagellar hook-associated protein FlgK [Bradyrhizobium sp.
           BTAi1]
 gi|146408990|gb|ABQ37496.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein)
           [Bradyrhizobium sp. BTAi1]
          Length = 611

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 139/442 (31%), Gaps = 20/442 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRR-----DTMTTISPENVTVVTQRSENKNMFDK 65
            +   +     + I  N+ NA+   YV +     +  +      V       +       
Sbjct: 1   MSGLRSTQAALSIISSNVANANTPGYVAQNPNQIEVASGGFGSTVMTTGVNRQLDLFVQN 60

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            L   +S       + +     + +      + +    ++    +L+S S N S      
Sbjct: 61  QLRTETSGGAYADQIANILKQLQSVYGTPGGSGTLETSLNNFTTALQSLSNNPSNQSAQS 120

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  A+ + Q  N + + +Q +R++ +++I   ++     +S++  +N  ++    S  
Sbjct: 121 VAMSAAQGLAQQLNATTKGIQTLRSNVEQDIGNSVTQANAAISQIATLNTQLQGLNTSDP 180

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-------------FETVP 232
            +    DQRD  +  +S+ + I  +   +N + V+T+ G  L               T+ 
Sbjct: 181 LSATLQDQRDNAINTLSKYVDIRVVSDGSNGVSVFTNSGVQLVGAGLSSQFTFSSPGTLD 240

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               +    + +   + N    +GV +     + +  G+I A L++RD  +   Q Q+D+
Sbjct: 241 ATSQYNSNPTKSGVGQLNIKLSNGVSLDVVSNNLLNSGQIAADLKLRDQTLVQAQTQVDQ 300

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +A  +  + S+K          P  F       L                +     +   
Sbjct: 301 LAATMASALSDKTTAGTAVAGPPAGFDVSTTGLLAGNTINLTYTDSSNVQRQVKIVNVND 360

Query: 353 DGGSVSKKFLWNVKNLAG--YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 +       +  G  +   +       N       +   N + T L    +    
Sbjct: 361 PAALPLQNATNANPSYVGVDFSLGMASVVSQLNSALGSAHLQFSNPSGTTLRITDDGTSQ 420

Query: 411 LEKNRSDSHDLHMKSQVVFNHI 432
                + +             +
Sbjct: 421 ATVKSASATTTVQTLASGSAQL 442



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 100/337 (29%), Gaps = 4/337 (1%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
           + ++       D+ +    + + +  + +            +        D     L   
Sbjct: 277 SGQIAADLKLRDQTLVQAQTQVDQLAATMASALSDKTTAGTAVAGPPAGFDVSTTGLLAG 336

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           + I    T   N    V   +        +    N          S      +  +  + 
Sbjct: 337 NTINLTYTDSSNVQRQVKIVNVNDPAALPLQNATNANPSYVGVDFSLGMASVVSQLNSAL 396

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
                         L+I D        +       +    S    +   ++      +  
Sbjct: 397 GSAHLQFSNPSGTTLRITDDGTSQATVKSASATTTVQTLASGSAQLPVFTDGGA---LYT 453

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G          G++  + VNP   ++P+ L    +  +    +          +     +
Sbjct: 454 GTITASGSQMTGLAGRLNVNPALLNDPTKLSTYSTSPQTAAGDSTRPDFLFAQLTSATFT 513

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
           ++        A      T+  Y +  +       + +  L     VV + + E +++T G
Sbjct: 514 YSPKTGLGSAAQ-PFQGTVSGYLQQVVSQQGSASTLATQLSQGQSVVVSTLKEKFNSTAG 572

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VN+  E+S LI+V+ +Y+ +  ++     M+Q+LL+ 
Sbjct: 573 VNMDSEMSNLIQVQNTYSANAHIMSVVQSMMQSLLQA 609


>gi|27464952|gb|AAN63049.1| flagellar component FlgE [Vibrio vulnificus]
          Length = 434

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/481 (9%), Positives = 120/481 (24%), Gaps = 60/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RS 57
             + +  + A     +   NI NA+   +            N  V               
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLVTNAKTTPGGGVQANQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +     +               S ++Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNE---LTRNGAFHLSKDNYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    +D     V ++       +    +   E           +        A+
Sbjct: 120 ANDEYLLGYQVDPLSGDVASY-------EPQPLNIPAEFGKPKQTSNVTVGVNLPARGAL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K   A         D  D      S    I  ++  +  +  Y     T   T       
Sbjct: 173 KDPQA--------FDFEDPDTYNRSTSSTIYDLMGQSYKLTTYYLKDQTQPNTWQTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +     +      +       G + +L                      
Sbjct: 225 TDSQGEKPLNIAGGDATNATGHIGHTVKFNNDGTLASL---------------------- 262

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                          + P    A  I        Q I+  +  + Q+ +     +     
Sbjct: 263 --------NNGQPIISDPLGAGAVPIDMNGGDPTQTIAFDLNSSTQFAAPFELTKFDEDG 314

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        ++     +   Y +  N       +  +     L +  +    W   N S 
Sbjct: 315 ATTGFLTKVDIDENGSVYGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWNSTNNSG 372

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  +S        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 373 DKIWGESNKGSFGTVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432

Query: 478 G 478
            
Sbjct: 433 I 433


>gi|313650466|gb|EFS14873.1| flagellar hook-associated 1 domain protein [Shigella flexneri 2a
           str. 2457T]
 gi|332758242|gb|EGJ88565.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri 4343-70]
 gi|332759634|gb|EGJ89939.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri 2747-71]
 gi|332761428|gb|EGJ91712.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-671]
 gi|332767690|gb|EGJ97883.1| flagella basal body rod family protein [Shigella flexneri 2930-71]
 gi|333005757|gb|EGK25275.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-218]
 gi|333008286|gb|EGK27760.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-272]
 gi|333019422|gb|EGK38705.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-304]
 gi|333019776|gb|EGK39048.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-227]
          Length = 274

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDTFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +   
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMP 230


>gi|170683341|ref|YP_001744104.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5]
 gi|300938641|ref|ZP_07153370.1| flagellar hook protein FlgE [Escherichia coli MS 21-1]
 gi|170521059|gb|ACB19237.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5]
 gi|300456426|gb|EFK19919.1| flagellar hook protein FlgE [Escherichia coli MS 21-1]
          Length = 401

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++S+    +  G I                              
Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|58039489|ref|YP_191453.1| flagellar hook-associated protein 1 FlgK [Gluconobacter oxydans
           621H]
 gi|58001903|gb|AAW60797.1| Flagellar hook-associated protein 1 FlgK [Gluconobacter oxydans
           621H]
          Length = 509

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 79/507 (15%), Positives = 162/507 (31%), Gaps = 28/507 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L +  + A +  N      A    N+ NA    Y++ +     +         R+   
Sbjct: 1   MGLNSALSIATSGLNAVQNAMAVASNNVSNAGTSGYIKENANVQSTVAGNMGTGVRTAAT 60

Query: 61  NMFDK---------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            +                 ++       L +  AL+   SA    + + +  +  L+ +L
Sbjct: 61  TLATNEQVQKALYAQNADVAAYTATSNSLSNITALQGSTSATSGSSGTLSDELGNLQSAL 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            S +          TVI  A    Q+ NT A   Q  R  A   +   +S++   L+ + 
Sbjct: 121 TSLTSTPDSASAQSTVISAASTFAQSVNTLASAYQTQRQTAQDTVVSSVSDINTDLTTIG 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            ++  I    +   D     +QR   L  +S  + +S     N DM + T++G TL    
Sbjct: 181 ALSTKIMNLKSIGQDTAALENQRYTALSSLSSELSVSWSESANGDMTISTANGVTLPTRD 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSS---------------NQGSAVPKGKIKALL 276
                   ++S    S S+         S+               +  + +  G + A +
Sbjct: 241 TSSTQGATVSSTWPLSTSSAQISVSSTYSATSADSSIPAITLNGRDVTADLTGGTLGANI 300

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEK----DPIAGNSENVPGLFIADGIKDLDNKLCQ 332
            +RD+ +P  Q QLD +   +    S++         + +                    
Sbjct: 301 TLRDTTLPTMQAQLDSLTSTVATRLSDQGMPLFTSGTDGDVPGTSRTDLTPTGSVGFSQV 360

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               +   +   +   S      ++ K   +     +           S N         
Sbjct: 361 MSVSSTYSDDPSKLLDSSTSGTQTIQKVLSYGFGTTSDSAGTSQTAAPSTNLGLTGTLST 420

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
           G   N  ++  A +         SD+      SQ     ++ + S T  V++  E++ ++
Sbjct: 421 GYTGNQGIISLATSLTAKQAATASDASSGLALSQTTQTSLTSNLSGTSTVSVDTEMANIV 480

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
            ++ +Y  + K++     M   LL  +
Sbjct: 481 TLQNAYAANAKVVSTVQTMFSALLSAI 507


>gi|254258855|ref|ZP_04949909.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1710a]
 gi|254217544|gb|EET06928.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1710a]
          Length = 419

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 127/413 (30%), Gaps = 19/413 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           + VT   +        L+A  +         +  A                  I+     
Sbjct: 60  STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++
Sbjct: 118 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   ++     +  LDQRD+ + K+S++ G+  + ++N +  V+ S G  L   
Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                 ++  G +  LL  R   +  
Sbjct: 237 NASYQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  D         + + + A    +      S         +    ++ 
Sbjct: 357 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSST 409


>gi|239628984|ref|ZP_04672015.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519130|gb|EEQ58996.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 541

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/541 (7%), Positives = 114/541 (21%), Gaps = 74/541 (13%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------NVTVVTQRSENK 60
                 +   I  NI N +   +                           T  +Q     
Sbjct: 1   MQAHQTKLDVIGNNIANVNTYGFKSSRARFQDVYYQTLQSATSGDNNRGGTNASQVGYGA 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSL-ESYSKNL 118
            +    L+   SA+             E        + +        L+         + 
Sbjct: 61  QLAGIDLNMERSALQSTGRPMDVAITGEGFFQVMDSDGNIFYTRAGNLQLDYKSGNLVDA 120

Query: 119 SEDILGKTVIDNAEEVVQNFN-----TSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           +   +     D   +   +        S    Q         ++  I++          +
Sbjct: 121 NGYTVLGVTGDPLGKAASSDKIHLSIPSKNNAQSSSTQEINGVKYTITSQNATGDANVSI 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLL--QKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           +  +        D      + +      +IS+    +++   N  M    S         
Sbjct: 181 SFKLDETLPDGADVVVQPSEFNTSSIVVRISDKASFASLSDFNEKMNSAISRANNGTPHP 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-------GKIKALLQIRDSVVP 284
             +       + T       +  +   +   +             G IK      + V  
Sbjct: 241 AGNFTITAQPAQTGGFTGKELMGENFGIKPGEQIFNDTYKDSGIFGGIKPSSTSTEPVFT 300

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +    + +      + K       +    +F     ++  +     + ET       
Sbjct: 301 ASGDVEYTIVKAGTSPDAWKLTATVKKDGKTRIFEGQISENSTSANSVWLKETGTPPSGE 360

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS--------FNKNFIFDPVAGINT 396
            +           +    +   N      +      +                       
Sbjct: 361 EAGQYIEVKHPGYTAIEDYFKINPTADTTVAAGSITAATNSRDLGLGSKAFTLTDGSAGG 420

Query: 397 NVTLLEYARNSIGW-------------------------------------LEKNRSDSH 419
            V+L +     +                                            S   
Sbjct: 421 TVSLSDAGVTILANGIIEANHPNLGKIQIGRIDLVTFDNPYGLEGVGNSYFKATGNSGDA 480

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +     +  S      V++  E + +I  ++ +  ++++I  +D +L+ L+   
Sbjct: 481 KACKAGEDGTGALKTSSLEMSNVDISTEFADMIVTQRGFQANSRIITVSDSILEELVNLK 540

Query: 480 K 480
           +
Sbjct: 541 R 541


>gi|300024588|ref|YP_003757199.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526409|gb|ADJ24878.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 417

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/480 (9%), Positives = 114/480 (23%), Gaps = 63/480 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L  +   + +     S +  ++  NI N +   Y               V +    + 
Sbjct: 1   MGLYGLMTTSISGMAVQSDRMGTVADNIANVNTTGYKEASAEFATLVAEGHVASYVPGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +    H   +                      + +P    +    S      N + 
Sbjct: 61  STIARRAVTHQGDLSYTNSPTDLAVSGNGFFMVQSPSGTPYLTRAGSFISTNGELVNAAG 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    + N        + +            K       N +  L     V+ ++   
Sbjct: 121 FTLLGYDLLNGGSSSVINSAAGLVPVGTANLGLKATPSTSGNFQVNLPSDAAVSTSLPSA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            A+  D                                         ++ +   +  +  
Sbjct: 181 NAAGADFAG--------------------------------KTSIITYDNLGHKVTLDIY 208

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           ++ T  ++      D    S+  G     G                              
Sbjct: 209 SAKTGPNQWEVSVYDNAGASAGGGFPYAAGS----------------------------- 239

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                 +  +         +     ++      ++  +    Q       +    + +  
Sbjct: 240 QLTTQALTFSGTTGKLTSPSPATLSVNVPNGATLNFNMGNTTQLAGAYIPVDASANGNGP 299

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +   ++    +   Y D    +    P+A + +   L   + N         S    
Sbjct: 300 SAVDRLEISAQGIVTAVYADGSRVDAFKIPLANVASPDNLTAISGNVFAT--NKESGDLQ 357

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L   +      I         V+L  EL+ +++ ++SY  ++K+     ++L  L+  V+
Sbjct: 358 LGTANSGSLGKIVSGALEKSSVDLASELTTMVEAQRSYTANSKVFQTGTELLDVLVNLVR 417


>gi|300311352|ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herbaspirillum seropedicae
           SmR1]
 gi|300074137|gb|ADJ63536.1| flagellar basal-body rod FlgE protein [Herbaspirillum seropedicae
           SmR1]
          Length = 432

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 114/483 (23%), Gaps = 63/483 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55
            F +  +  N A++    I  N+ NA    + +          N             V+ 
Sbjct: 2   GFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVSV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      + + ++ +        F  L   ++              + +     Y 
Sbjct: 62  PAVAQQFTQGNISSSNNPLDIAINGDGFFQLSASLTNKSP----MYGRNGQFQLDKSGYI 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S +           +              ++ D         + +   ++  + ++ 
Sbjct: 118 VNPSMNGAYLMGWAAGAQGGDPVP--------LQIDTSSIPATPTTTISTKVNLDSRLSV 169

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  +             L   +     + T            +   T++  +    
Sbjct: 170 PTTTPFNAADPTSYNSSTGVDLYDSLGNPYSMQTYYVKAAPTGTPPTTTWTVYAKIDNTT 229

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                      +                   +       + QI  + +    N L     
Sbjct: 230 LNNGATPAVPVALGT----------------MTFDSTGTMTQINGAAISPTNNTLTISTA 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L                                    I+ +   + Q  S    L    
Sbjct: 274 QLATVAKA-----------------------GGVFAAPINISYSGSTQTGSAFVNLAQVQ 310

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +       +  ++     +I  Y +   KN     +        L     N   +   + 
Sbjct: 311 NGMPPGSLSSFSVDKDGSIIGSYSNQQTKNLGTVVLVNFANPNGLQPLGNNL--YQASSA 368

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + S  +   +   F  +         V+L  EL  +I  ++ Y  +++ I   D +LQTL
Sbjct: 369 AGSPLVGKPTTGTFGTLQARAKEDSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTL 428

Query: 476 LEG 478
           +  
Sbjct: 429 VSL 431


>gi|146281771|ref|YP_001171924.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501]
 gi|145569976|gb|ABP79082.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501]
          Length = 438

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/476 (8%), Positives = 98/476 (20%), Gaps = 43/476 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSENKNM 62
            FN A +  N AS        NI N     +                 +           
Sbjct: 2   TFNVALSGLNAASTDLNVTGNNIANVGTTGFKASRAEFADLYATSMLGSGGNAVGSGVTT 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         I                    +  +         +   E Y  N     
Sbjct: 62  ADIAQQFTQGNITNTGNSLDLAISGNGYFMVSNNGSMLYTRAGAFKTDDEGYVINSEGYN 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    ++   ++V    T+                                        +
Sbjct: 122 LQGYGVNANGDIVSGVTTN------------------------------------LKVDS 145

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S    +      + L    +  +  +T    ++      S    L++T        +   
Sbjct: 146 SNQAPNATSSVVETLALNSNSSVPNNTPFDASDSSTYNWSTSVPLYDTQGNSHTMTQYFV 205

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              +++     +      ++  S                 +    +   ++      + +
Sbjct: 206 KDDSNQWTMYTLIDGRNPADPTSTEAYEVSIGFTASGALDLTSLASTDFDVNADGTLTLN 265

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P          +                    I       S                
Sbjct: 266 TWVPATVTDSTTSPVTWGSNGAAASASGISIDLRNISQ--TNTSFAVLSSPVQDGYTTGQ 323

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +  ++     +   Y +  +K      +A    +  L         W +   S    + 
Sbjct: 324 LSGLSIDDTGMMFATYTNGQSKVIGQVVLANFTNSQGLASVGG--TAWAQTLASGEPAIG 381

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +         V+L  +L  LI  +++Y  + K +     + QT++  
Sbjct: 382 TPGSGTLGSLQSGALEDSNVDLTAQLVNLIVAQRNYQANAKTVETESAIAQTIINL 437


>gi|304392493|ref|ZP_07374433.1| flagellar hook protein FlgE [Ahrensia sp. R2A130]
 gi|303295123|gb|EFL89483.1| flagellar hook protein FlgE [Ahrensia sp. R2A130]
          Length = 423

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/485 (9%), Positives = 114/485 (23%), Gaps = 67/485 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRS 57
           MSL  +   + +     S + +++  N+ N D   Y +  T          +  V +   
Sbjct: 1   MSLYGMMRTSVSGMQAQSNRLSTVADNVANVDTTGYKKYSTEFAQLVRPGASSGVDSSLG 60

Query: 58  ENKNMFD-KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYS 115
               + D +   +    +   +               +    S +             + 
Sbjct: 61  SGGVLTDARQHISQQGNVSYTQSSTDIAINGNGFFVVEDSGGSNSLTRAGSFVADASGFL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N                         + ++ + AD        I ++            
Sbjct: 121 VNAGG----------------------QRLKGVAADDQGNFPASIGSISALEPVSVDKQA 158

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                T +     +            S  +   T V N+           T ++ +    
Sbjct: 159 LAAVPTQNGRFVPNLPAN--------SVAVTGDTPVDNSAASTFAHKTSLTAYDNLGDAK 210

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +  ++ T          D    S   G       +                       
Sbjct: 211 VIDIYSTPTGPLTWEMTAFDASTASPTGGFPYASAALGT--------------------- 249

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                      +  +  N      +           + +   +    Q  ++ S +    
Sbjct: 250 ---------STLTFDPANGQLAAGSPDTLTFTVPNGRPVDLALAGTTQLAADYSIVTADL 300

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +         + G   L   Y D   ++    P+A + +   +         +L    
Sbjct: 301 DGAPPASMEGIVVDGEGVLSARYSDGSLRDLYRIPLAAVVSPDRMDS--DTGTVFLANTE 358

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +          +         V L +EL+ +I+ ++ Y  ++K+      ++  +
Sbjct: 359 SGDIRVDFAGTGSNGVLISGALEQSNVELADELTDMIRAQRGYTANSKVFQTGADLMDVI 418

Query: 476 LEGVK 480
           +   +
Sbjct: 419 VNLRR 423


>gi|302874597|ref|YP_003843230.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
 gi|307690792|ref|ZP_07633238.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
 gi|302577454|gb|ADL51466.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
          Length = 474

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/489 (10%), Positives = 115/489 (23%), Gaps = 26/489 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++               +   I  NI N     +       T S                
Sbjct: 1   MIKGMYSGITGLKANQTKLDVIGNNIANVGTTAFKSSSIRFTDSLYQNMTSASAPGYN-- 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                      +G          +K      +    +  +  S L  +++     +    
Sbjct: 59  -----------LGGTNPSVVGLGVKVSAVTTNMTQGNLQNTGSNLDCAIDGDGFFMVATG 107

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
              T  +    +    ++                    ++     +    +      +T 
Sbjct: 108 PLPTGNEFGVTLDTLSHSIINGNGMGVNYTRDGSFSLDADGNLLSNSGYRILGYPLQETG 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV-----YTSDGTTLFETVPRDINF 237
               + D+    +      +   GI+        M +       +   TL  T       
Sbjct: 168 LGISSVDYAANGNCNFVDANSPYGITAATDTLVPMKIPNKVAIAATRNTLDATGAPVGLA 227

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                 + T++   I I+    +    + V             +V P        ++   
Sbjct: 228 MTYTGSSTTTDKPDITINNADNTYVGDTDVTIKIFFNDKYQDTTVTPPMTTPRYVISING 287

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + +  D    N +   G        D+          T         N          
Sbjct: 288 SDAVAVADADTINIKMADGSTKTLSQLDIVLNNAPTDPATPADIQAAAKNSWQFTVNADG 347

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK---- 413
            K       N+     +     D          ++     V L +   N           
Sbjct: 348 EKAIKN--FNIEKNGVIKGVLQDGRVTVLGQLAMSTFKNTVGLQKLGNNLYNVSANSGEP 405

Query: 414 --NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S   +    ++  F            V+L E+ + +I   +++  ++K+I  +D++
Sbjct: 406 IIRSSVGTEKDRSNEDAFGSCVNGVVEMSNVDLAEQFTEMIVASRAFQANSKIITTSDEI 465

Query: 472 LQTLLEGVK 480
           LQ L++  +
Sbjct: 466 LQELVQLKR 474


>gi|323495377|ref|ZP_08100454.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546]
 gi|323310300|gb|EGA63487.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546]
          Length = 434

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/484 (8%), Positives = 115/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             A +  + A     +   NI NA+   +                        + V    
Sbjct: 3   YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +   +                 + ++Y
Sbjct: 63  VAQ---QFHEGSSIYTNNPMDLRISGTGFFAVAKDRLSPTTNE---LTRNGAFHLNKDNY 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L    ++     V ++               +   + I        +   + 
Sbjct: 117 MVTANDEFLLGYQVNKDTGDVLSY---------------EPSPINIPKEFGKPKQTANIE 161

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +      +       D  D      S    I   +  +  +  Y     T   T    
Sbjct: 162 VGVNLPAGGELKDPALFDYTDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTY 221

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                       +              +       G + +L                   
Sbjct: 222 YTVTDSAGEKPLNILGGDATAPTGHVGHTMKFNNDGTLASL------------------- 262

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                          N  +      A+ ++     + Q +S  +    Q+ +     +  
Sbjct: 263 -----------NNGQNIVSEALGTGANPVELNGADVNQTLSFGLQDATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 EDGATTGFLTKVDFDENGSVLGTYSNGENIILGRVSLVRVANEQGLDK--KGGTQWDSTQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        ++  F  IS        +++ +EL  LI  ++++  +++ +   ++  Q 
Sbjct: 370 FSGDKIWGESNKGSFGTISSGTLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQTQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|126441590|ref|YP_001057329.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           668]
 gi|134283597|ref|ZP_01770296.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           305]
 gi|217425071|ref|ZP_03456567.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           576]
 gi|226199842|ref|ZP_03795393.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810468|ref|YP_002894919.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           MSHR346]
 gi|238562529|ref|ZP_00440322.2| flagellar hook-associated protein FlgK [Burkholderia mallei GB8
           horse 4]
 gi|251767452|ref|ZP_02267340.2| flagellar hook-associated protein 1 [Burkholderia mallei PRL-20]
 gi|254188065|ref|ZP_04894577.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254201902|ref|ZP_04908266.1| flagellar hook-associated protein 1 [Burkholderia mallei FMH]
 gi|254207237|ref|ZP_04913588.1| flagellar hook-associated protein 1 [Burkholderia mallei JHU]
 gi|254295821|ref|ZP_04963278.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           406e]
 gi|126221083|gb|ABN84589.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           668]
 gi|134245006|gb|EBA45101.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           305]
 gi|147747796|gb|EDK54872.1| flagellar hook-associated protein 1 [Burkholderia mallei FMH]
 gi|147752779|gb|EDK59845.1| flagellar hook-associated protein 1 [Burkholderia mallei JHU]
 gi|157805698|gb|EDO82868.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           406e]
 gi|157935745|gb|EDO91415.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           Pasteur 52237]
 gi|217392091|gb|EEC32117.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           576]
 gi|225928193|gb|EEH24229.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506435|gb|ACQ98753.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           MSHR346]
 gi|238522496|gb|EEP85940.1| flagellar hook-associated protein FlgK [Burkholderia mallei GB8
           horse 4]
 gi|243062745|gb|EES44931.1| flagellar hook-associated protein 1 [Burkholderia mallei PRL-20]
          Length = 714

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/501 (12%), Positives = 146/501 (29%), Gaps = 50/501 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 48  MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 106

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           + VT   +        L+A  +         +  A                  I+     
Sbjct: 107 STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 164

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++
Sbjct: 165 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 224

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   ++     +  LDQRD+ + K+S++ G+  + ++N +  V+ S G  L   
Sbjct: 225 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 283

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                 ++  G +  LL  R   +  
Sbjct: 284 NASYQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDP 343

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI----------- 334
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 344 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 403

Query: 335 ---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                T      Y      L D  + S        +      +        +     D  
Sbjct: 404 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSF 463

Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
             + T   L  ++  +              +          +    +S  Y    G    
Sbjct: 464 TVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG---- 519

Query: 446 EELSFLIKVEQSYNISNKLIM 466
                      +YN ++K + 
Sbjct: 520 -------TTTLAYNAASKTLS 533



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S    V+     +  +   A  +   +  L  + +  +  +    +    +     
Sbjct: 390 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 449

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             +L  T     +F  + +       +    +G  +++            +   +     
Sbjct: 450 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 509

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                QL      L  + + K            +                +         
Sbjct: 510 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 569

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395
              + +       V      ++       D          N   ++   + + +     N
Sbjct: 570 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 629

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL       +  +    S           +   I+++  +  GVN  EE + L++ +
Sbjct: 630 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 689

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           Q Y  + K+I   + + QT+L  
Sbjct: 690 QLYQANAKVIQTANSVFQTVLGL 712


>gi|90411005|ref|ZP_01219019.1| flagellar hook protein [Photobacterium profundum 3TCK]
 gi|90328218|gb|EAS44529.1| flagellar hook protein [Photobacterium profundum 3TCK]
          Length = 435

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/486 (8%), Positives = 116/486 (23%), Gaps = 66/486 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPENVTV 52
            FN + +    + +   +   NI NA+   +                    T +   V  
Sbjct: 2   GFNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                      +      ++ +  +     F A+ +      + N            + +
Sbjct: 62  SVVAQ---QFHEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNNN---LTRNGAFHLNKD 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N     L    +D   + V ++   A +V            ++I            
Sbjct: 116 NQVVNSEGQFLLGYGVDQETDQVTSYEPQAMKVPDQFGQPRASTNIDIG----------- 164

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
               +    +++       D  D      S  + +   +     +  Y     +      
Sbjct: 165 ----VNLPASAEAKDATLFDFNDSNSYDKSTSVTMYDSLGQPYKLSTYYVKDNSAPNRWS 220

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                         + +N           +       G +  +                 
Sbjct: 221 VYYTGTDATGEKPINITNGGTTAANGHQGSTLDFNTDGSVAQINN--------------- 265

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             + +I           +              D   +                      +
Sbjct: 266 -GQPIISEALGAGGAGLDLNGADEAQTLTMQFDSPTQYAAPFEIR--------------K 310

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              + +        ++     ++  Y +  N       +  +     L+   +    W  
Sbjct: 311 FSENGATTGYLAKVDIDAKGSIVATYSNGENVTLGRVGMVRVANEQGLVS--KGGTQWAT 368

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +      SQ  F  +         +++ +EL  LI  ++++  +++ +   +++ 
Sbjct: 369 GQDSGAAIWGEASQGAFGSVKSGTLEQSNIDMTQELVDLITAQRNFQANSRALEVDNQLQ 428

Query: 473 QTLLEG 478
           QT+L+ 
Sbjct: 429 QTILQI 434


>gi|260767769|ref|ZP_05876704.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972]
 gi|260617278|gb|EEX42462.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972]
 gi|315179399|gb|ADT86313.1| flagellar hook protein FlgE [Vibrio furnissii NCTC 11218]
          Length = 434

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/484 (8%), Positives = 112/484 (23%), Gaps = 66/484 (13%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             + +  + A     +   NI NA+   +                          V    
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                        +Y
Sbjct: 63  VAQ---QFHEGSSIYTNNPMDLRISGTGFFAVAKDRLVPQQNE---LTRNGAFHLDKNNY 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L                       ++  D    +  E + L           
Sbjct: 117 MVTSNDEYLLGY--------------------QVNPDTGDVLSYEPAPLNIPAEFGKPKQ 156

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            +      +     D  D               ++    ++    Y      L +    +
Sbjct: 157 TSNIEVGVNLPANGDLKDPTLFDFTDPDTYNRSTSSTIYDSMGQAYKLTTYYLKDQTQPN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                        E       G   +++            +    D  +    N    ++
Sbjct: 217 TWQTYYTVTDKEGEKPLNITGGDATTASGQVGHT------MKFNNDGTLASLNNGQPIVS 270

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L G  +  +    +                     Q +S  +    Q+ +     +  
Sbjct: 271 EPLGGGTNPVNLNGADVN-------------------QVLSFGLDAATQFAAPFELTKFD 311

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 312 EDGATTGFLTKIDFDENGSVLGTYSNGENITLGRVALVRVPNEQGLDK--KGGTQWDSTQ 369

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q 
Sbjct: 370 FSGDKIWGESNKGSFGTINNGTLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQN 429

Query: 475 LLEG 478
           +L+ 
Sbjct: 430 ILQI 433


>gi|283955071|ref|ZP_06372574.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793438|gb|EFC32204.1| flagellar hook-associated protein FlgK, putative [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 608

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/514 (11%), Positives = 149/514 (28%), Gaps = 63/514 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +    +        +  Q A+   NI NA+   Y R+  + T +              
Sbjct: 1   MGIFGTLHTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQTTNGYITTGGVQVGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V +    +       L   S+ +   + + S           D  N      +     +
Sbjct: 61  AVESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRF-PDLQNTGILKNLENYNKA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              ++ N +E+    T++  ++ + ++ N +   + KI+   D +I+  ++ + +   E+
Sbjct: 120 WNDFASNPNENATKITLVKASQTLTESINNTFTTLDKIQKKVDNDIKNTVNEINKIGEEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGI--------------STIVRNNN 215
            ++N  I  + A     A++  D+RD L   +S+++                +TI    +
Sbjct: 180 AIINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAVASKNEINQDNRLDTTITDPRH 239

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +     + +       +  +           +  +        +  + +  G++ A 
Sbjct: 240 QYNLSIEGFSIVDGINFHPLKLD---YDDKNKSYSIYYETPDEKVRDLTAKINGGQLGAQ 296

Query: 276 LQIR------------DSVVPIFQNQLDEMARVLIGSFSEKDPIA--------------G 309
           L +R            D ++  + + LD  A+ +I   +     +              G
Sbjct: 297 LDLRGRNYSKNEGKYEDGIIQGYMDSLDTFAKTMINETNNLYASSAKSSVTSDYLSGLKG 356

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +   V                     + +        N +       ++     N    +
Sbjct: 357 DIPLVNYDRTIQPGSFDIIIYDDKGDKKLTKTITIDVNTTMNDIMSQINANTDDNNNKNS 416

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHDLH 422
                 +            D +  IN                  +               
Sbjct: 417 NDDVDDHINASFSYDAKTGDGLFQINAKSGFKVAIEDKGTNFAGAFSIGGFFSGTDASDI 476

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSF-LIKVE 455
                + N  S   +++ GV+   +++  +I+++
Sbjct: 477 KVKDSILNDPSTVRASSNGVDSGNDMANKIIQLQ 510



 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%)

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
             +           I + +           +  D    +      +     G  +     
Sbjct: 386 TKTITIDVNTTMNDIMSQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKS 445

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                I+D         S     +    S+        +       +   +    D+ N 
Sbjct: 446 GFKVAIEDKGTNFAGAFSIGGFFSGTDASDIKVKDSILNDPSTVRASSNGVDSGNDMANK 505

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
                 +   F    G   N+T+ EY R   G +  +  +++ +++ ++ ++N +   Y 
Sbjct: 506 IIQLQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNLSNETLYNSVYSEYQ 565

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  GVN  EEL+ LI+ + SY  + K++   ++ML TLL   
Sbjct: 566 SKSGVNTNEELAALIQYQSSYGAAAKIVSTVNQMLDTLLGLK 607


>gi|157146226|ref|YP_001453545.1| flagellar hook protein FlgE [Citrobacter koseri ATCC BAA-895]
 gi|157083431|gb|ABV13109.1| hypothetical protein CKO_01983 [Citrobacter koseri ATCC BAA-895]
          Length = 401

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       I+     ++       +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PGPITIPNTLMAAKATTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S  +               ++   ++      N   V      T   T           +
Sbjct: 160 SSDELPSKTPFDPSDADSYNKKGTVTVFDSQGNAHDVNVFFVKTQDNTWEVHTMDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T T  +   F +  ++ S   + +  G I                              
Sbjct: 220 ATPTLSTTMEFNENGMLVSGGSANIVTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPASFSLSFLNSMQQNTGANNIVATNQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGKLTNGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|297517866|ref|ZP_06936252.1| flagellar hook protein FlgE [Escherichia coli OP50]
          Length = 401

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMATKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|324007916|gb|EGB77135.1| flagellar hook protein FlgE [Escherichia coli MS 57-2]
          Length = 401

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNHWDVYTLDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++S+    +  G I                              
Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|238799107|ref|ZP_04642563.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969]
 gi|238717054|gb|EEQ08914.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969]
          Length = 420

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 109/476 (22%), Gaps = 61/476 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +   +    N+    
Sbjct: 62  NDGTATTTNRRLDLAISQNGFFRMQD------SSGGIFYARNGQFKLDADRNIVNMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    I      +      +      T 
Sbjct: 116 LTGYPA-------------------------TGTPPTIQQGANPIPLSIPQDMISARATD 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S     +     D        I+  +     +        +  T ++T+           
Sbjct: 151 SGSMVANLTSTHD--------IVPATPAFDPDKPATYSFVNNMTTYDTLGNRHEINVFYV 202

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S +     D     S+   A     ++  +Q   +                 G+ S
Sbjct: 203 KRTESSTTGNSWDVYTRDSSANPAQTAPLLRGSMQFDTN-----------------GALS 245

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                A                                  Q     S +    +      
Sbjct: 246 SVTNGANPPSTTDFTLTIPMGIVNGATAGPFALSVAGTKQQNTGTDSIVSQNQTGYAAGE 305

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +S  +      +A       L     N   W E   S +  L 
Sbjct: 306 FTGFQINNDGSVVGTYSNSQTQLLGQIVMANFANPEGLSSEGDNV--WKETRASGNPMLG 363

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 364 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 419


>gi|27363705|ref|NP_759233.1| flagellar hook protein FlgE [Vibrio vulnificus CMCP6]
 gi|37679147|ref|NP_933756.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016]
 gi|320157109|ref|YP_004189488.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O]
 gi|27359821|gb|AAO08760.1| Flagellar hook protein flgE [Vibrio vulnificus CMCP6]
 gi|37197889|dbj|BAC93727.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016]
 gi|319932421|gb|ADV87285.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O]
          Length = 434

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/481 (9%), Positives = 120/481 (24%), Gaps = 60/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N             V    
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +     +               S ++Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNE---LTRNGAFHLSKDNYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    +D     V ++       +    +   E           +      + A+
Sbjct: 120 ANDEYLLGYQVDPLSGDVASY-------EPQPLNIPAEFGKPKQTSNVTVGVNLPASGAL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K   A         D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPQA--------FDFEDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +     +      +       G + +L                      
Sbjct: 225 TDSQGEKPLNIAGGDATNATGHIGHTVKFNNDGTLASL---------------------- 262

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                          + P    A  I        Q I+  +  + Q+ +     +     
Sbjct: 263 --------NNGQPIISDPLGAGAVPIDMNGGDPTQTIAFDLNSSTQFAAPFELTKFDEDG 314

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        ++     +   Y +  N       +  +     L +  +    W   N S 
Sbjct: 315 ATTGFLTKVDIDENGSVYGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWNSTNNSG 372

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  +S        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 373 DKIWGESNKGSFGTVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432

Query: 478 G 478
            
Sbjct: 433 I 433


>gi|333004892|gb|EGK24412.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri VA-6]
          Length = 274

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDTFITNQLRAVQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +   
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMP 230


>gi|322435945|ref|YP_004218157.1| flagellar hook-associated protein FlgK [Acidobacterium sp.
           MP5ACTX9]
 gi|321163672|gb|ADW69377.1| flagellar hook-associated protein FlgK [Acidobacterium sp.
           MP5ACTX9]
          Length = 469

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/494 (13%), Positives = 149/494 (30%), Gaps = 51/494 (10%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-------- 53
           SL ++++ ++           +   N+ N +   Y R+        + VT+         
Sbjct: 3   SLSSLYDLSRGALQADQVALTTTANNVANQNTVGYTRQVVTFASGADRVTLSDGAIASAN 62

Query: 54  ----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYI 104
               T  S    + ++ +   +          +  +  E + +    +           I
Sbjct: 63  APEATVSSARDRVLEQRVQQQTQLQAGTSAQATALSQLEAVFSISGSSATVGSTQIGTAI 122

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                SL + + N S+    + V+  A  + Q FN  A+++  + A  +  +   ++ + 
Sbjct: 123 DGFFSSLTALTSNPSDSSTRQAVLTAAGTLAQAFNAGAQQISSVAAGINSGVASSVTAVN 182

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              + +  +N  I    +   DA    DQR   + ++S+ IG+  I   +N + + T+ G
Sbjct: 183 SLTATIAGLNAQI-QSQSPNTDAGALEDQRQTAIAQLSQYIGLDQISTESNGIALTTASG 241

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
            TL                  ++             ++  + +  G I   L  +   + 
Sbjct: 242 ATLVSGTKSY--------DISSAVVGGSAKIYDSTGADITAGITGGSIGGQLAAQGGALT 293

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                LD +A  +  + + ++    N        I                         
Sbjct: 294 TASTALDALAYRIATAVNTQNEAGLNGSGSAAGAIFTV---------------------- 331

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
              PS              +V  +A          ++                 T+    
Sbjct: 332 ---PSSSAGAAGALVVSATSVNAIASAGSGEGVTGNTNALALAAIATGTDANGATIDGSF 388

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              +  +  + S         Q     ++    +   V+L EE + L + ++SY+ + KL
Sbjct: 389 AALLSQVGSSSSSLQAQSTAQQATLTALTSQRDSLSAVSLDEEAANLSQYQRSYDAAAKL 448

Query: 465 IMFTDKMLQTLLEG 478
               D +  T L  
Sbjct: 449 FSIVDSVTVTALNL 462


>gi|253996319|ref|YP_003048383.1| flagellar hook protein FlgE [Methylotenera mobilis JLW8]
 gi|253982998|gb|ACT47856.1| flagellar basal body FlaE domain protein [Methylotenera mobilis
           JLW8]
          Length = 421

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 108/476 (22%), Gaps = 60/476 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---M 62
            F +  +  N AS+Q   I  N+ NA+   + +          N       S+      +
Sbjct: 2   SFQQGLSGLNAASKQLEVIGNNVSNANTVGFKQSRAEFADVFANSITGGGGSQIGIGTNL 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                      I                               + +   + +  + +   
Sbjct: 62  ATVAQQFTQGNITATNNSLDIAINGNGFFRMSSGGAVTYTRNGQFQLDKQGFIVDSASKR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L     D    ++              A  D +I                +N   +    
Sbjct: 122 LTGYAADANGNILSG------------AAVDLQINTADIQPVATTKIEGTINLDSRNNPM 169

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                    D                T   N+  + VY S G +             +  
Sbjct: 170 PAAPVFSSTDP---------------TTYNNSTAVTVYDSLGNSHTLQNFFRKTAANVWD 214

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T +  PI   G                                Q+      +  + +
Sbjct: 215 IYTTVDGAPIPASGAAT----------------------------AQMTFTGTGVSPTIT 246

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P  G                 +       +     + Q+ S  S             
Sbjct: 247 PTAPATGIPSVTFTPMNTATTPVANGAANVTTTIDYSKSTQFGSAFSINALSQDGFTSGR 306

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +  N A    ++  Y +  +KN     ++       L     N   W     S      
Sbjct: 307 LSGFNTASDGTIVGRYSNGQSKNLGRVVLSSFTNPNGLQSLGGN--AWAVSASSGPALTG 364

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +   +  S      V+L  EL  +I  ++ Y  + + I   D++LQTL+  
Sbjct: 365 APGSGLLGVLQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKTQDQVLQTLVNL 420


>gi|209545589|ref|YP_002277818.1| flagellar hook-associated protein FlgK [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533266|gb|ACI53203.1| flagellar hook-associated protein FlgK [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 503

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/508 (14%), Positives = 173/508 (34%), Gaps = 33/508 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M LL+  + A +  N    Q   +  N+ N+    YV      + +      V  +    
Sbjct: 1   MDLLSSLSTATSGLNGIEYQLGVLSNNVSNSSTTGYVSETAEVSSAVAGGVGVGIKIGTT 60

Query: 61  NM---------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            +                 +S       L +   ++   SAD     +    +  ++ +L
Sbjct: 61  QLSVNKALMAALYGQNAQVASLTATNNSLAAVSDIQGSTSADAGSTTTLADELGNVQSAL 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            + +   +       V   A+ +     + +      R DA+  +   +S++   L++L 
Sbjct: 121 TTLTSTPTNSASQSAVYSAAQSLTTTIQSLSSTYTAQRQDAENSVVSTVSSVNYDLTQLG 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            ++  I    AS     D  +QR  ++  +S  + ++    +  DM+V T+DGT L    
Sbjct: 181 QLSQQIMSLRASGGSTADVENQRLQVMSSLSSELSVTFSETSTGDMIVRTADGTELPTRP 240

Query: 232 PR-------------------DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            +                     +    +SY    ++N      ++  ++  + +  G +
Sbjct: 241 DQIGENDSTVTLPTSTWPLSTSGSTITPSSYYQAGDTNSTISGIMLNGTDITAHLTGGTL 300

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
            A + +RDS  P  Q QLD  +  L   FS+                    +     +  
Sbjct: 301 GANITLRDSTYPTMQAQLDSFSSTLATRFSDAGLSLFTDGTGAVPATDPTAETPSGIVGL 360

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               ++  +    ++         +S  F     +++G  +  +            +   
Sbjct: 361 SSVISVDTSAPLTTDGDTSTITAVLSTAFGTASTDVSGSLEAPSSGLGPEG-----NLST 415

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
           G +    L+  A +          D+ D    +  V   +  S +N  GVN+ +++S ++
Sbjct: 416 GYSGTQGLVALATSLTSAQGAVIGDATDDLTSATSVQTTLQTSVANVSGVNVDDQMSTVV 475

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +Y  + K++     M   LL+ ++
Sbjct: 476 ALQNAYAANAKVVTAVQTMFTALLDAIQ 503


>gi|148976394|ref|ZP_01813100.1| flagellar hook protein E [Vibrionales bacterium SWAT-3]
 gi|145964217|gb|EDK29473.1| flagellar hook protein E [Vibrionales bacterium SWAT-3]
          Length = 434

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/473 (9%), Positives = 120/473 (25%), Gaps = 44/473 (9%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
             A +  + A     +   NI NA+   +                           + + 
Sbjct: 3   YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFG---------------DVYSNSLF 47

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
               +  G                                 +    Y+ N  +  +  T 
Sbjct: 48  TNAKTTSGGGAQASQVAQQ--------------------FHEGSSIYTNNPMDLRVSGT- 86

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
                      +    E+ ++  +    +  +   +      L   +          +  
Sbjct: 87  ----GFFAVAKDRMVPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYAP 142

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
                  +    K +E I +   +  N D+    +      +T  R  +    +S   + 
Sbjct: 143 KPLDIPAEFGKPKQTENIEVGVNLPANGDLKDPAAFNFKDADTYNRATSSTVYDSMGQSY 202

Query: 248 ESNPIFI--DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           +    ++       +      +     +  L I        Q  +    +          
Sbjct: 203 KLTTYYLKDQTQPNTWQTYYTMTDETGEKPLNITGGDATNAQGHVGHTMKFNNDGTLASL 262

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  + P    A+ I        Q +   +  + Q+ +     +     +       
Sbjct: 263 NSGQPINSDPLGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTGFLTK 322

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            +   Y  ++  Y +  N       +  +     L +  +    W   N S        +
Sbjct: 323 IDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDK--KGGTQWDSTNDSGDKIWGESN 380

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+ 
Sbjct: 381 KGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433


>gi|323498420|ref|ZP_08103416.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326]
 gi|323316493|gb|EGA69508.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326]
          Length = 438

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 120/484 (24%), Gaps = 62/484 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVT 54
             A +  + A     +   NI NA+   +                          V    
Sbjct: 3   YVALSGISAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQAAK 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                    +      ++ +  +     F A+ +                     + ++Y
Sbjct: 63  VAQ---QFHEGSSVYTNNPMDLRISGTGFFAVAKDRLTPTTNE---LTRNGAFHLNKDNY 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +++ L    ++     V ++               +   + I        + + + 
Sbjct: 117 MVTANDEFLLGYQVNGDTGDVLSY---------------EPSPINIPKEFGKPKQTSNIE 161

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +      +       D  D      S    I   +  +  +  Y      L +    +
Sbjct: 162 VGVNLPAGGELKDPALFDYSDPETYNRSTSSTIYDSMGQSYKLTTYY-----LKDQTQAN 216

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                        E     + G   +         G +   ++  +       N    + 
Sbjct: 217 TWQTYYTVTDSAGEKPINIVGGDATTPT-------GHVGHTMKFNNDGTLASLNNGQNIV 269

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              +G     DP A N                   + Q +S  +    Q+ +     +  
Sbjct: 270 SGPLGGTGPDDPNAINLNG--------------ADVTQTLSFGLSDATQFAAPFELTKFD 315

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        +      ++  Y +  N       +  +     L +  +    W    
Sbjct: 316 EDGATTGFLTKVDFDENGSVLGTYSNGENITLGRVAMVRVANEQGLDK--KGGTQWDSTQ 373

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S        ++  F  I+        +++ +EL  LI  ++++  +++ +   ++  Q 
Sbjct: 374 FSGDKIWGESNKGSFGSINSGTLEQSNIDMTQELVDLITAQRNFQANSRSLEVHNQTQQN 433

Query: 475 LLEG 478
           +L+ 
Sbjct: 434 ILQI 437


>gi|254503336|ref|ZP_05115487.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11]
 gi|222439407|gb|EEE46086.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11]
          Length = 421

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 111/478 (23%), Gaps = 61/478 (12%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
                +  N  S +  ++  NI N+    Y R +T            +  S       K 
Sbjct: 1   MRTGVSGMNAQSSKLGAVADNIANSSTTGYKRAETEFASQVLAQGGGSYNSGGVQAHTKY 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT----HYISKLRDSLESYSKNLSEDI 122
             +   ++                        +                + Y  N +   
Sbjct: 61  AISDQGSMSFTTSKLDLAVDGNGFFIVSDSTGAGASQALTRAGSFVPDGQGYLVNTAGMY 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    I N        N              + + +  + L    +    ++  +   +A
Sbjct: 121 LQGYPITNGNAPSVVANGLGGL---------EPVNITQNQLEATPTSTATLHANVDEDSA 171

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               A+                + +   + N   + VY +  T    T   ++       
Sbjct: 172 IVAAANLPSANAATAEYSHKTSMVVYDNLGNEVTLDVYYTKTTDTPPTTDWEVTVYNAAD 231

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               +   P     +  S+ Q                                  + + +
Sbjct: 232 RDPATGGFPYGAANIGTSTIQFDTTTG-----------------------QRTGAVTAVN 268

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P  G  +                                 +  +        +    
Sbjct: 269 ITVPNGGTYDIDLENSTYT-----------------------DAGFTVTNVDADGNAPSS 305

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                      L + Y +   +     P+A + +   L   + N   +     S    + 
Sbjct: 306 VEKVEFGEDGTLYSIYTNGDRRPIYKIPLADVPSPDKLDPVSGNI--YRPSIDSGDVRVG 363

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    ++        V+L  EL+ +I+ +++Y  ++++      ++Q L+  V+
Sbjct: 364 FPGDGGLGELAVGALEGSNVDLANELTSMIESQRTYTANSQVFKAGSDLMQELVNLVR 421


>gi|71906391|ref|YP_283978.1| flagellar hook protein FlgE [Dechloromonas aromatica RCB]
 gi|71846012|gb|AAZ45508.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078:Flagellar basal body FlaE [Dechloromonas
           aromatica RCB]
          Length = 442

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/483 (10%), Positives = 117/483 (24%), Gaps = 53/483 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQ---- 55
            F +  +  N +S+       NI NA    +    T               + V      
Sbjct: 2   AFQQGLSGLNTSSKALDVTSNNIANASTVGFKSASTHFADVYAASLAGGGASQVGIGVSA 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      +   S+++        F  + +                 +       Y 
Sbjct: 62  SAIAQQFTQGNITTTSNSLDIALNGNGFFRMTQ-------DGAVRYTRNGQFHLDSTGYI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +++ L     D   ++V +  +               I  + +         ++  +
Sbjct: 115 VNDNKENLTGYAADAQGKIVASTPSG-------IKVDTAPISPQATGATSDGVRFSLNLN 167

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           +      +   +    +  D      S  + +   + N + M +Y          V  + 
Sbjct: 168 STDKVPGTAWTSPTGTNVPDTSTYNYSNAVTVYDTLGNAHTMTMYFVKSAPTAAEVLANP 227

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                       +       G                  L    DS              
Sbjct: 228 TTTGAWDVHYQVDGTSEANVGGSP---------------LRMTFDSTGAYLAPTTPATLA 272

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
           V +   +       N              +                 QY S+ +      
Sbjct: 273 VNLNGVATNLSTPANVVTNSATSPLSFAMNFAGS------------TQYGSDFAIASKTQ 320

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +   +     +   Y +   +N     +A       L+    N   ++E   
Sbjct: 321 DGYASGQLSSLTIGDNGVIQGVYSNGQTRNMAQIVLANFQNPNGLMSIGNN--DYIETAD 378

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +   +   F  +         V+L  EL  +I  +++Y  + + I   D+++QTL
Sbjct: 379 SGQSMIGTPNTGTFGVLQSGAVEDSNVDLTAELVNMIVQQRNYQANAQSIKTQDQIMQTL 438

Query: 476 LEG 478
           +  
Sbjct: 439 VNI 441


>gi|168699687|ref|ZP_02731964.1| probable flagellar hook-associated protein [Gemmata obscuriglobus
           UQM 2246]
          Length = 562

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/446 (13%), Positives = 134/446 (30%), Gaps = 23/446 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQRS 57
           +   +    +    A +    I +N+ NA    Y R D          +   V + +   
Sbjct: 1   MTNSYAIGTSAIATAQKALDLIGQNVANATTPGYHRVDPQLVSRTTGPNVTGVDIGSVTR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +       +   +   G+   L       E   A           +    + +E  +  
Sbjct: 61  YSLPAVRTAVLTGNGDQGRYTALLDTNRQIETALAT--GQGGVGDKLESFFNQVEELTAR 118

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                  +T++  A ++    N +A ++ ++R+D  ++I   +  +    + +  +N  I
Sbjct: 119 PDSLASRRTILTAATDLSNQLNATAGDIDRLRSDLGRKIGATVDQVNTLATRIASLNTQI 178

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
             K      A+D  DQRDV +  +S++I +  +   N  + V + D   +          
Sbjct: 179 LTKENRGLTANDLRDQRDVAIDDLSKLIDVKIVEVPNGQINVISGDSAVVVGEFANRFTV 238

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            +  +           I     S+        G +   +Q  ++ +P  + +LD +A  L
Sbjct: 239 SQNANDD---------IVITDTSAAATRTFRSGSLAGDVQSFNTDIPALRARLDTLAGQL 289

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I   ++       S  +  L   +    +       ++             +      +V
Sbjct: 290 IQKVNQVQATGLGSTPITSLSGTNQASSVTA----PLNAAGLPFSVQAGTLTVSVTNNNV 345

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S     N                +              T+ TL   A+    +   + + 
Sbjct: 346 SPATRTNTAVAINPATQSLTDIATALSAVPGLTATVNATSNTLDIQAQAGFSF---DFAG 402

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVN 443
              L      V N  +      +GVN
Sbjct: 403 RDTLPAGPGAVANTDTSGLLVALGVN 428



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/444 (9%), Positives = 115/444 (25%), Gaps = 6/444 (1%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQS-FEALKEMMSADDH 95
            RR  +T  +  +  +     +   +   +     + + Q   L +   +L   +   ++
Sbjct: 124 SRRTILTAATDLSNQLNATAGDIDRLRSDLGRKIGATVDQVNTLATRIASLNTQILTKEN 183

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
              +      +   +++  SK +   I+             +         +     +  
Sbjct: 184 RGLTANDLRDQRDVAIDDLSKLIDVKIVEVPNGQINVISGDSAVVVGEFANRFTVSQNAN 243

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
            ++ I++     +             +   D      + D L  ++ + +          
Sbjct: 244 DDIVITDTSAAATRTFRSGSLAGDVQSFNTDIPALRARLDTLAGQLIQKVN-QVQATGLG 302

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              + +  GT    +V   +N   +              +  V  + + +          
Sbjct: 303 STPITSLSGTNQASSVTAPLNAAGLPFSVQAGTLTVSVTNNNVSPATRTNTAVAINPATQ 362

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                +        L         +   +     + +      +  G   + N    G+ 
Sbjct: 363 SLTDIATALSAVPGLTATVNATSNTLDIQAQAGFSFDFAGRDTLPAGPGAVANTDTSGLL 422

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             + VN  +  + +               +              +          VA   
Sbjct: 423 VALGVNGLFVGSSAASIRVSPTISADPTLLAAGRTGEVGDGTNLERLGAVRDVQAVA--- 479

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL +   +    L  + +   DL          ++     TVGV+  EEL  L+  +
Sbjct: 480 -TRTLTQDFADIAATLGSSINSFDDLQTTQTSALRELATQEQATVGVDTNEELLKLLAFQ 538

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           +    ++K +   +  +  L   +
Sbjct: 539 RMIQGASKYLSVVNTSMDALFNII 562


>gi|116626495|ref|YP_828651.1| hypothetical protein Acid_7458 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229657|gb|ABJ88366.1| protein of unknown function DUF1078 domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 421

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 115/483 (23%), Gaps = 67/483 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPENVTVVTQRS 57
           +   F+ A +  +  +     +  N+ N +   +       RD +T      +       
Sbjct: 1   MFTSFSTALSALSATATAVDVVGNNLANLNTPGFKTNVVYFRDLVTQSLGAGLGETQVGF 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                         +      LL +         A +   N+        +       K 
Sbjct: 61  GTGRPLTIRQFTQGAIQSSTGLLDAAVQGDGFFVAKNAQGNTVYTRAGNFQVDDAGNLKT 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            + + +                               +    + +    + ++ V   A 
Sbjct: 121 NTGESVQGW-------------------------TSLDSTTGVLDTNGAIGDIVVPVGAA 155

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K   AS     D         +  S+      +            +   L     +    
Sbjct: 156 KQPIASTGFTLDLNLNSSAAAEDTSKFSDTIKVYD-------SLGESHILTVHFQKTDAS 208

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           +   S +V  E       G         ++  G    L        P   + +      L
Sbjct: 209 QWSYSVSVPGEDLSGGTAGTPTDIGASGSLTFGADGQL------TSPAAGSVIGLDITGL 262

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               ++         +  G  I    +                  +              
Sbjct: 263 ASGAADMHLDWNPRTDNGGGRITQFGQPSSASASSQNGSAAAQLIR-------------- 308

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                     LA    ++  Y D          +A +    +L+    N   +    R+ 
Sbjct: 309 --------VGLADGGKMLAQYSDGQQVVVGQVAMASVRNPESLIAVGNN--NYQASARTA 358

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +  + + +      I         V++ +E + LI +++ Y  ++++I   D++ Q  + 
Sbjct: 359 TPAIGLPNTGGRGDIVGGAIEASTVDIAKEFTNLIVLQRGYQANSRVITTVDELSQETIN 418

Query: 478 GVK 480
             +
Sbjct: 419 LKR 421


>gi|258592496|emb|CBE68805.1| putative Flagellar hook protein flgE [NC10 bacterium 'Dutch
           sediment']
          Length = 412

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/477 (9%), Positives = 104/477 (21%), Gaps = 67/477 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
           + F+ A             I  NI NA+   Y       +                    
Sbjct: 2   STFSTAITGLKAYQTDLGVIGNNIANANTTGYKASRAQFSEL------------------ 43

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                        + ++      +     D         +  + +     +   +     
Sbjct: 44  -----------LVQTIEGATPPSDSTGGIDPMQIGAGVIVGGILNIQTQGAIEPTGRSSD 92

Query: 125 KTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
             +       +    +     V     DA+  +    + L+    +   ++  +    A+
Sbjct: 93  LAIQGEGFYVLSNGESQIYTRVGSFELDANGNLVDAGTGLKVQGID-GDIHIPLGSNEAA 151

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                + +   +         +  +      +  ++ T  G          +N       
Sbjct: 152 GTTEVELVGNLNASDADDPITLTENESTLETSFFIIDTLGGK-------HQVNVTFSVPG 204

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           +  +      +      +   +    G+I                             + 
Sbjct: 205 SANTGLWDYAVSAASNDTGVFTGASAGQI-----------------------QFASGGNV 241

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                  S       I            Q  S        + +  S              
Sbjct: 242 LSITGPGSGGG----IFTFNPGNAAASAQEFSIDFDALTGFAALSSVSMKQQDGVPPGSL 297

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
               ++    +   Y +          +A  +    LL  A       E   S      +
Sbjct: 298 TSFTVSNDGMVNGIYSNGLVTEMDTLKLASFSNPAGLLRLANGQFA--ETPNSGVAQYGV 355

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   I         V+L  EL  LI  ++ Y  + ++I   +++ QT L  ++
Sbjct: 356 AGTGGRGTIVAGALEQSNVDLGTELVNLIIAQRGYEANAQVISVANQIQQTTLNLLR 412


>gi|302185576|ref|ZP_07262249.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           syringae 642]
          Length = 686

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 131/417 (31%), Gaps = 17/417 (4%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------NVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  +TT S +              T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGTGYIGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L   ++            +  + +             +S     ++
Sbjct: 62  SDVRRIYNSYLDTQLQTTTALSADAVAYSGQASKTDTLL--SDSATGIATQLSDFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + N ++     + +  A  +   FN+ A ++     + + ++    + +    + +  
Sbjct: 120 GIATNATQSSDRSSFLTQANALSARFNSIASQLSSQNDNVNAQLANFTTQVNELTNTVAS 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +A     +  LD R   +++++E++G+     N N  V   +    +  +  
Sbjct: 180 LNKQITQASAGNGTPNTLLDSRSEAVRQLNELVGVKVSENNGNYDVYTGTGQALVSGSTA 239

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++     +  +       +       ++  S V  G I  LL+ R  V+    N+L  
Sbjct: 240 YKMSTAPSAADPLQYNVQIAY---GQTQTDVSSVVTGGSIGGLLRYRSDVLVPAANELGR 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A VL    + +     +S+   G  +   I   D    + I +T         + +   
Sbjct: 297 TAMVLSDQVNSQMSQGIDSKGNFGSNLYSSINGADAITQRSIGKTTNSAGSGNLDVTIGD 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                +  +     + + +        +S     + D         ++         
Sbjct: 357 TSKLTADDYEVTFNDASNFTVRRLPNGESVGTGSLADNPPKQFEGFSVSLNGNTLAA 413



 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/444 (9%), Positives = 108/444 (24%), Gaps = 17/444 (3%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
           Y +  T  +      ++        ++     +             + +  + + S  + 
Sbjct: 260 YGQTQTDVSSVVTGGSIGGLLRYRSDVLVPAANELGRTAMVLSDQVNSQMSQGIDSKGNF 319

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            +N  +        +  S  K  +    G   +   +      +              + 
Sbjct: 320 GSNLYSSINGADAITQRSIGKTTNSAGSGNLDVTIGDTSKLTADDYEVTFNDASNFTVRR 379

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +    S     L++           + + +        +    +  +  I +      + 
Sbjct: 380 LPNGESVGTGSLADNPPKQFEGFSVSLNGNTLAAGDIFKVTPTRNGASGISVVLTDAKDI 439

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                 +       +         +N+ +    S         V ++    V  G + + 
Sbjct: 440 AAAAPLTATAGTSNSGTGGFTQPVLNTKSDIYNSTQTADLRNAVKNSTPMKVVMGAVSST 499

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                      Q+     A          + + G+        +   I   D        
Sbjct: 500 ---------GVQSYTLLNASGGAVLDQNGNAVGGSIIQGQSNKLKLSIGYTDTTTTPSSK 550

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
               +      +P                    AG  D  N       +          +
Sbjct: 551 TAFELEMTISGSPVANDTFSIGMTG--------AGSSDNRNALAVVGLQTAKTVGATNGS 602

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              +L     + +  +    S   +    +  V      S  +  GV+L EE S LIK +
Sbjct: 603 VGTSLSGSYADLVSVVGTLASQGKNDVTATAAVVGQAKASRDSVSGVSLDEEASNLIKYQ 662

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           Q Y  S+++I     +  TL+  +
Sbjct: 663 QYYTASSQIIKAAQTIFSTLINSL 686


>gi|162147480|ref|YP_001601941.1| flagellar hook-associated protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786057|emb|CAP55639.1| putative flagellar hook-associated protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 503

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 75/508 (14%), Positives = 172/508 (33%), Gaps = 33/508 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M LL+  + A +  N    Q   +  N+ N+    YV      + +      V  +    
Sbjct: 1   MDLLSSLSTATSGLNGIEYQLGVLSNNVSNSSTTGYVSETAEVSSAVAGGVGVGIKIGTT 60

Query: 61  NM---------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            +                 +S       L +   ++   SAD     +    +  ++ +L
Sbjct: 61  QLSVNKALMAALYGQNAQVASLTATNNSLAAVSDIQGSTSADAGSTTTLADELGNVQSAL 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            + +   +       V   A+ +     + +      R DA+  +   +S++   L+++ 
Sbjct: 121 TTLTSTPTNSASQSDVYSAAQSLTTTIQSLSSTYTAQRQDAENSVVSTVSSVNYDLTQIG 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            ++  I    AS     D  +QR  ++  +S  + ++    +  DM+V T+DGT L    
Sbjct: 181 QLSQQIMSLQASGGSTADVENQRLQVMSSLSSELSVTFSETSTGDMIVRTADGTELPTRP 240

Query: 232 PR-------------------DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            +                     +    +SY    ++N       +  ++  + +  G +
Sbjct: 241 DQIGENDSTVTLPTSTWPLSTSGSTITPSSYYQAGDTNSTISGITLNGTDITAHLTGGTL 300

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
            A + +RDS  P  Q QLD  +  L   FS+                    +     +  
Sbjct: 301 GANITLRDSTYPTMQAQLDSFSSTLATRFSDAGLSLFTDGTGAVPATDPTAETPSGIVGL 360

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               ++  +    ++         +S  F     +++G  +  +            +   
Sbjct: 361 SSVISVDTSAPLTTDGDTSTITAVLSTAFGTASTDVSGSLEAPSSGLGPEG-----NLST 415

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
           G +    L+  A +          D+ D    +  V   +  S +N  GVN+ +++S ++
Sbjct: 416 GYSGTQGLVALATSLTSAQGAVIGDATDDLTSATSVQTTLQTSVANVSGVNVDDQMSTVV 475

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +Y  + K++     M   LL+ ++
Sbjct: 476 ALQNAYAANAKVVTAVQTMFTALLDAIQ 503


>gi|254182133|ref|ZP_04888730.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1655]
 gi|184212671|gb|EDU09714.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1655]
          Length = 714

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/501 (12%), Positives = 146/501 (29%), Gaps = 50/501 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 48  MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 106

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           + VT   +        L+A  +         +  A                  I+     
Sbjct: 107 STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 164

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++
Sbjct: 165 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 224

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   ++     +  LDQRD+ + K+S++ G+  + ++N +  V+ S G  L   
Sbjct: 225 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 283

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                 ++  G +  LL  R   +  
Sbjct: 284 NASYQLATVASPSDPSELTIVSKGVAGSAQPGATQYLPDVSLTGGALGGLLAFRSQTLDP 343

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI----------- 334
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 344 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 403

Query: 335 ---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                T      Y      L D  + S        +      +        +     D  
Sbjct: 404 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSF 463

Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
             + T   L  ++  +              +          +    +S  Y    G    
Sbjct: 464 TVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG---- 519

Query: 446 EELSFLIKVEQSYNISNKLIM 466
                      +YN ++K + 
Sbjct: 520 -------TTTLAYNAASKTLS 533



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S    V+     +  +   A  +   +  L  + +  +  +    +    +     
Sbjct: 390 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 449

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             +L  T     +F  + +       +    +G  +++            +   +     
Sbjct: 450 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 509

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                QL      L  + + K            +                +         
Sbjct: 510 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 569

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395
              + +       V      ++       D          N   ++   + + +     N
Sbjct: 570 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 629

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL       +  +    S           +   I+++  +  GVN  EE + L++ +
Sbjct: 630 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 689

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           Q Y  + K+I   + + QT+L  
Sbjct: 690 QLYQANAKVIQTANSVFQTVLGL 712


>gi|218663527|ref|ZP_03519457.1| flagellar hook-associated protein FlgK [Rhizobium etli IE4771]
          Length = 291

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 149/284 (52%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N  Q+I NN  QQ + +  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSALNSVQSIFNNTGQQSSVVSTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     ++    Q+ L +     + +   + Y  SP+ Y+S  +++L++++ + S 
Sbjct: 61  TALLAQYLQSNAKDSAQQTLVTGLESLKSLVGGNDYETSPSTYLSAFQEALQTFATSPSS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               ++ +  A+++  + NT++  VQ IRA+AD EI  ++S L   LS+    N+A+K  
Sbjct: 121 TTSAQSAVTAAQDLANSLNTASDGVQSIRAEADAEIATQVSTLNTLLSQFEAANNAVKLA 180

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA+  D    LD+R+ LL++IS I+G++++VR+NNDM +Y SDGT LFETVPR +     
Sbjct: 181 TATGTDMSSALDEREKLLKQISSIVGVNSVVRDNNDMALYASDGTVLFETVPRTVTSAST 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
            +Y   +E+ P           +        ++ALLQ+RD    
Sbjct: 241 ATYVAGTEAMPSISTRCTRCPAKIDDERLRSLQALLQLRDESPD 284


>gi|254227983|ref|ZP_04921413.1| Flagellar hook protein FlgE [Vibrio sp. Ex25]
 gi|262396035|ref|YP_003287888.1| flagellar hook protein FlgE [Vibrio sp. Ex25]
 gi|151939479|gb|EDN58307.1| Flagellar hook protein FlgE [Vibrio sp. Ex25]
 gi|262339629|gb|ACY53423.1| flagellar hook protein FlgE [Vibrio sp. Ex25]
          Length = 398

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/474 (10%), Positives = 113/474 (23%), Gaps = 77/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T  +     +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S  G  R +             D+   +            +++    S   L  
Sbjct: 59  NFDKDGSISGTGRAMDLAINGGGFFVTKDNMGQTLYTRSGVFATDKDNFVTANSGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +                                 +    L   +V N  +   + +  
Sbjct: 119 YSV---------------------------------DSNNNLMTGSVGNIQVSTSSLNAK 145

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 D         S I    T    ++     +S  T +++++       +  + T 
Sbjct: 146 ATDGL-DFVANFDASASAIDKTVTPFNPDDPNSFNSSYTTKVYDSLGNSHTVTQYFTKTA 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           ++            +      V   K  +L                              
Sbjct: 205 SNSWEVNVQVDGGATPVTTVPVTFDKDGSL------------------------------ 234

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                          +            +   +  + Q+ +      +  +         
Sbjct: 235 --------SSPTAPFNVSFPAAGANAMSVDINLKGSTQFGAKFGVSTNSPNGYTSGELAG 286

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             + G   +   Y +  ++      +A       L +   +   W +   S +    +  
Sbjct: 287 VRVEGNGMVYATYTNGQSQLQGQVVLADFANTQGLAKV--SGTAWTQSFSSGAPITGVPG 344

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++        V+L  EL  L+  +++Y  + K I  +DK+ Q L   V
Sbjct: 345 SGTLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398


>gi|86146155|ref|ZP_01064481.1| flagellar hook protein [Vibrio sp. MED222]
 gi|218708804|ref|YP_002416425.1| flagellar hook protein FlgE [Vibrio splendidus LGP32]
 gi|85836102|gb|EAQ54234.1| flagellar hook protein [Vibrio sp. MED222]
 gi|218321823|emb|CAV17792.1| Flagellar hook protein flgE [Vibrio splendidus LGP32]
          Length = 434

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/481 (7%), Positives = 117/481 (24%), Gaps = 60/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            +                  
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTPGGGAQASQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +     +               + ++Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINE---LTRNGAFHLNKDNYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L                        +  ++ + +      L              
Sbjct: 120 ANDEFLLGY--------------------DVDPNSGEVLSYAPKPLDIPAEFGKPKQTEN 159

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +     D  D      +        ++    ++    Y      L +    +   
Sbjct: 160 IEVGVNLPANGDLKDPATFDFKDPDTYNRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQ 219

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                   T E       G   +S             +    D  +    +    ++  +
Sbjct: 220 TYYTMSDETGEKPVNITGGDATNSAGHVGHT------MKFNNDGTLASLNSGQPILSDPI 273

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               +  D    +                     Q ++  +  + Q+ +     R     
Sbjct: 274 GAGENAIDLNGADP-------------------TQVLNFGLDSSTQFAAPFELSRFDEDG 314

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +   Y  ++  Y +  N       +  +     L +  +    W   N S 
Sbjct: 315 ATTGFLTKIDFDEYGSVLGSYSNGENVILGRVGLVRVPNEHGLDK--KGGTQWDSTNASG 372

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 373 DKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432

Query: 478 G 478
            
Sbjct: 433 I 433


>gi|254437430|ref|ZP_05050924.1| conserved domain protein [Octadecabacter antarcticus 307]
 gi|198252876|gb|EDY77190.1| conserved domain protein [Octadecabacter antarcticus 307]
          Length = 1436

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/416 (12%), Positives = 119/416 (28%), Gaps = 22/416 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           + ++F   ++  N   Q      +NI NA+ + Y RRD                 +    
Sbjct: 1   MASLFEIGRSAINAQRQALNVTGQNIVNANTEGYRRRDANLTEVFGVQSELNSMTSQVGL 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V +                                 L+ + +A    +      ++   
Sbjct: 61  GVKLGVVNRAYDAFLTDTKRVSVGRFEASDAFVG--KLESLENAILPNDGDLGAVMTAFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           + L   S    ++      ++    V   FN +A  +  +     +EIE+ +  + R L 
Sbjct: 119 EQLRQVSAEPGDNAPRSAAVEMGHTVANAFNNTANLLGGLAEGTVEEIEIRLVEVNRNLE 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L+V+N  ++      +  +  +D+RD +L  +SE+I ++  +    D  V     T   
Sbjct: 179 ALSVLNGQLRASNIGANPPNSLMDERDRILDNLSEVIPLNVSIGGRFDAEVRLGGSTAGP 238

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             +  +         +           G        S +  G ++ L+            
Sbjct: 239 IILSGEDAKNLTVVASEQGSIMLRIGSGQ-----IVSQLEAGSLRGLVDAH-GTTQRAVM 292

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +LD +AR      + +     + +   G  +   +    +       +            
Sbjct: 293 ELDALARDFTQKMNAQHSQGIDLDGQLGRELFSVVDFEVSARTVNQGDAEASIYLVPGRA 352

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             L D            +      + +         +     V G   +  ++ +A
Sbjct: 353 DRLSDMQMTYDAKRGQWQLSNETGETLGTGRGRIELDGAVIDVTGTPEDGDVISFA 408



 Score = 36.5 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 68/287 (23%), Gaps = 17/287 (5%)

Query: 201  ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
            +S  I        +   +     G       P  +             S          +
Sbjct: 1153 LSAEIDFDASTGLSIITLTSQQAGADAMVITPSSVATNLGFKLAAAELSVENGQLFARST 1212

Query: 261  SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
            +     +  G   A            +  L  M        S +  I            +
Sbjct: 1213 NGSAVDIKSGGTSAAGSYLHLTDIPDEELLVMMGLEGAKRLSAQYEIGVPVSAEDREPES 1272

Query: 321  DGIKDLDNKLCQGISETICVNPQYRS-NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              ++ +D+   +             +   S         +    +    +G         
Sbjct: 1273 FRVQMMDDNSGRVELFDNASGASIATRMSSGFARFNVSDQMVELSGFAESGDSFEFITGQ 1332

Query: 380  DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK----------SQVVF 429
             S   +   D +       +     ++    +                       ++ V 
Sbjct: 1333 RSAGDSRNMDMLLAFGQQGSDRRSFQDDFRTIAAGA------GATLEAARMTLSSNEAVR 1386

Query: 430  NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +    S     GV+L EE + L+  +Q++  + +++    +M  TL+
Sbjct: 1387 DAAVASEGELSGVSLDEEAAKLMSQQQAFQAAARILQTAREMFDTLI 1433


>gi|254508422|ref|ZP_05120542.1| flagellar hook protein [Vibrio parahaemolyticus 16]
 gi|219548632|gb|EED25637.1| flagellar hook protein [Vibrio parahaemolyticus 16]
          Length = 438

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/471 (9%), Positives = 116/471 (24%), Gaps = 36/471 (7%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
             A +  + A     +   NI NA+   +                      + ++F    
Sbjct: 3   YVALSGISAAQLDLNTTSNNIANANTFGFKESRAEFGDV-----------YSNSLFTNAK 51

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
                 +  Q++ Q F     + + +                + +  +   +E       
Sbjct: 52  TTPGGGVQAQKVAQQFHEGSSVYTNNPMD--LRISGTGFFAVAKDRLTPTTNELTRNGAF 109

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
             N +  +   N       ++  D    +  E S +            +      +    
Sbjct: 110 HLNKDNYMVTANDEYLLGYQVNGDTGDVLSYEPSPINIPKEFGKPKQTSNIEVGVNLPAG 169

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
            D  D               ++    ++    Y      L +    +             
Sbjct: 170 GDLKDPALFDYSDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQTQANTWQTYYTVTDSAG 229

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           E     + G   +         G +   ++  +       N  + +    +G     DP 
Sbjct: 230 EKPVNILGGDATTPT-------GHVGHTMKFNNDGTLASLNSGNNIVSGPLGGTGPDDPN 282

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
           A N              D                 Q+ +     +     +        +
Sbjct: 283 AINLNGADVSQTLSFGLDSA--------------TQFAAPFELTKFDEDGATTGFLTKVD 328

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                 ++  Y +  N       +  +     L +  +    W     S        ++ 
Sbjct: 329 FDENGSVLGTYSNGENITLGRVAMVRVANEQGLDK--KGGTQWDSTQFSGDKIWGESNKG 386

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            F  I+        +++ +EL  LI  ++++  +++ +   ++  Q +L+ 
Sbjct: 387 SFGSINSGTLEQSNIDMTQELVDLITAQRNFQANSRSLEVHNQTQQNILQI 437


>gi|222823431|ref|YP_002575005.1| flagellar hook-associated protein FlgK [Campylobacter lari RM2100]
 gi|222538653|gb|ACM63754.1| flagellar hook-associated protein FlgK [Campylobacter lari RM2100]
          Length = 609

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/444 (10%), Positives = 124/444 (27%), Gaps = 24/444 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           M +        +    A  Q  +   NI NA+   Y R+  + +                
Sbjct: 1   MGIFDSLYTGVSGIKAAEIQINTTGNNISNANAVFYTRQRAVQSSGMSIDRGGLHLGTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            + T +  +       L   ++       L             D              D+
Sbjct: 61  QIDTIKRLHDEHSYYELKNATTQQNYTNYLGQILQEASQRF-PDMQGTGILQDYKNYYDA 119

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
             +++ N S+      ++++A  + QN   + +++ K++   +++I   +  +     E+
Sbjct: 120 WNNFASNPSDGASKIDLVNSANVLAQNIQKTLQDLDKMQQTVNEQIRQTVDEINNIGQEI 179

Query: 171 TVVNDAIKFKTA-SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV----------- 218
             +N  ++ +      +A+   D+RD L  ++S+++        ++              
Sbjct: 180 ANINKQLENEEVLPTDNANQLRDRRDELELRLSKLVDAVAWKGKSSQDSTLESTMTDSGR 239

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
            Y               +  K++           +        +  S +  G++ A L +
Sbjct: 240 YYDLSIQGFSIVNGSSFHPLKLDDNNQNGFYQIYYEVNDENRYDLTSKISGGQLGAQLDL 299

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
           R        +   +                  ++       A   K   + L     +T 
Sbjct: 300 RGRNYDGNHDTYSDGILQEYKDMLNTFTKTLITQTNNVYAQAATEKVNSDDLKGLKPDTS 359

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            ++                 K      + +    +             I D   G   N 
Sbjct: 360 LMSYDRNIQAGSFDLTVYNEKGDPVATRTIKIDVNTTIEDIIKQINADIDDNHDGKPGND 419

Query: 399 TLLEYARNSIGWLEKNRSDSHDLH 422
            L +Y +    +  ++ S +  ++
Sbjct: 420 -LNDYFKAFYHYDGQSDSGNFQIN 442



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 118/389 (30%), Gaps = 5/389 (1%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           S D    ++ T        S++ +S           +  +       +        + R 
Sbjct: 225 SQDSTLESTMTDSGRYYDLSIQGFSIVNGSS--FHPLKLDDNNQNGFYQIYYEVNDENRY 282

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           D   +I       +  L       +   +      +  D L+     L   +  +     
Sbjct: 283 DLTSKISGGQLGAQLDLRGRNYDGNHDTYSDGILQEYKDMLNTFTKTLITQTNNVYAQAA 342

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
               N   +      T   +  R+I     +      + +P+    + +  N        
Sbjct: 343 TEKVNSDDLKGLKPDTSLMSYDRNIQAGSFDLTVYNEKGDPVATRTIKIDVNTTIEDIIK 402

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           +I A +       P   N L++  +       + D        +   +         N  
Sbjct: 403 QINADIDDNHDGKPG--NDLNDYFKAFYHYDGQSDSGNFQINGLKKGYKISFKDKGTNFP 460

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                 +   N Q  S+ +      +       +   + G  D+ N      N+   F  
Sbjct: 461 GALNVSSF-FNGQDASSINVNSSIRNDPNTLKASSNGVDGNNDIANAMLQLQNQKVNFYN 519

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
             G   ++TL  Y R   G +  N   +   H  +  VFN     Y +  GVN  EEL+ 
Sbjct: 520 KDGTVDSLTLDGYYRKFTGKIASNAESNSFAHATNMTVFNTAYAEYQSKSGVNTNEELAA 579

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           LI+ + SY  + K++   D+M++TLL   
Sbjct: 580 LIQYQASYGAAAKIVTTVDQMIETLLGLK 608


>gi|89072315|ref|ZP_01158894.1| flagellar hook protein [Photobacterium sp. SKA34]
 gi|89051847|gb|EAR57299.1| flagellar hook protein [Photobacterium sp. SKA34]
          Length = 398

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/474 (9%), Positives = 104/474 (21%), Gaps = 77/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  +  + Q  +I  NI N     +    T  +     +              +
Sbjct: 2   SFDIALSGLDATNIQLNTISNNIANVSTSGFKESRTEFSAVYNGMQAGGVEVA---AISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S  G  R L    +        D    +            +             
Sbjct: 59  NFDKTGSITGTGRPLDLAISGSGFFVTKDLTGQTLYTRSGVFGSDKD------------- 105

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                                 I ++   +++    +    L    V N  I   +    
Sbjct: 106 --------------------NNIVSNNGAKLQGYTVDANNNLQAGAVGNLKITTASLPAK 145

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +     ++  +       I+    N  D    +                +       
Sbjct: 146 ATDELAFVANLDARSSVIDPAINPFDPNATDSFNSSYTSKVYDSLGNPHTVTQYFTKTNA 205

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                 + +DG    +   +                                        
Sbjct: 206 NEWQVNVVVDGAATPTQTQNV--------------------------------------- 226

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +                       I+  I    Q+ +N     +  +         
Sbjct: 227 VFNTDGTLQSPTAPFAVNFIPAGADAANINIDIAGTTQFGANFGVSTNAPNGYTSGELAG 286

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L++   N   W++   S +      S
Sbjct: 287 VRVEDNGMVFAAYTNGQSQLQGQVMLADFANPQGLVK--TNGTSWIQSFSSGAPVNGAPS 344

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +         V+L  EL  L+  +++Y  + K I  +DK+ Q+L   V
Sbjct: 345 TGTLGGLVAGALEGSNVDLTSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 398


>gi|224825164|ref|ZP_03698270.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum
           2002]
 gi|224602835|gb|EEG09012.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum
           2002]
          Length = 419

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/483 (9%), Positives = 105/483 (21%), Gaps = 76/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS-------- 57
            F +  +    AS+Q   +  N+ NA    + R  +       +       +        
Sbjct: 2   GFQQGLSGLAAASKQLEVVGNNVANASTNGFKRSRSEFADMYGSSLYGVSNAQAGIGVRT 61

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              ++      +++  + +      + F  LK         +          +     Y 
Sbjct: 62  AEVSQLFDQGNINSTGNNLDLAISGKGFFVLKS---PSAASSQDAYSRNGAFQVDANGYL 118

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L      N                                + ++ +    +  
Sbjct: 119 VNGDGYKLQGYAAQNG-------------------------------VIQYTATPVDLQF 147

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                + +     D     +     IS    ++    +  +         +L  T     
Sbjct: 148 QTSLISPTATSNVDLGVNLNSSAMVISPTPTVNPTDTSTYNSATSVKVYDSLGNTHDLSF 207

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            F K       ++            ++                                 
Sbjct: 208 YFVKGTPTATGTDWTVNLYVDGTAVTSPAGPQT--------------------------- 240

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L    +      G   N+               +    +  +  + Q+ S+        
Sbjct: 241 -LSFDTNGVLTSGGVLSNIQYTATTPNGSTTPMTIA---TVDLSKSTQFNSSFGVNSLSA 296

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        N+     +   Y +          +A       L     N    +  + 
Sbjct: 297 DGNAPGTLTSTNINNQGIIEATYSNGKTVAIGQVALANFTNVQGLQSMGGNLWKDVASST 356

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +             I         V+L  EL  +I  ++ Y  + + I   D +LQTL
Sbjct: 357 GGAKV-GAPMSADLGEIQSQALEQSNVDLNSELVDMIVAQRFYQANAQSIKTEDTILQTL 415

Query: 476 LEG 478
           +  
Sbjct: 416 INL 418


>gi|17548572|ref|NP_521912.1| flagellar hook-associated protein FlgK [Ralstonia solanacearum
           GMI1000]
 gi|17430820|emb|CAD17502.1| probable flagellar hook-associated protein 1 [Ralstonia
           solanacearum GMI1000]
          Length = 642

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 133/407 (32%), Gaps = 15/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N        A         NI NA    Y R++ + T +           + V V 
Sbjct: 3   SSLLNIGATGLRVADINLQVTGNNISNASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  +A      L S  +  +   +D   N+     ++   ++ +S
Sbjct: 63  TVKRIYDQFLTAQVQSGQAASSAADQLNSLVSGLDTYLSD--SNSGLGSALTSFFNAADS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  +  A  +   FN  + ++  +    + +++ +++++     ++  +
Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAISGQMASLSNQVNTQVQTQVNSVNSTTQQIAAL 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ND I    A+     A+D  DQRD L+Q +++ I  S +  ++    +Y  +G  L +  
Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGN 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    + Y  T  S         V+ +  S +  G +  L+Q R + +   QN L 
Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVTID-DSQLGGGALGGLMQFRQNTLIPAQNSLG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    + ++    +     G  +                          +N    
Sbjct: 300 RLAAAVSADVNTQNKEGMDLNGKLGTDLFSTAGPSVAASSSNTGTGALTATITNANAGQG 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V +       +         + +   + G   + 
Sbjct: 360 YDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASG 406



 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +         R +   +   +  +  +++ Q    Q    +    +      +
Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGNQS 242

Query: 99  SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                ++       L    K+ +  +           +          +   +    +  
Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVTIDDSQLGGGALGGLMQFRQNTLIPAQNSLGRLA 302

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +++     E   +N  +     S           +     ++  I  +   +  + 
Sbjct: 303 AAVSADVNTQNKEGMDLNGKLGTDLFSTAGPSVAASSSNTGTGALTATITNANAGQGYDY 362

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261
            V Y+    T+             +  T                        ++      
Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASGDSFLVRPTVNAASTMQ 422

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              S        + + +           +  +      + S        + +   L    
Sbjct: 423 TLTSDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGSPLASAVSLTYSGGSLSGFP 482

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   +                Q  +                 +   ++          ++
Sbjct: 483 GSVTVTVNGTATTYSGTAPYTQGATYSFNGIQMSLTGTPAANDTFTVSANTANSTDGHNA 542

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + +     N   ++     N +  +    S +       + +    +    +  G
Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQASQASANLTSQKALLASSTSQQQSVSG 602

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL +E   L+K +Q+Y  S K++   + +  +LL  
Sbjct: 603 VNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSI 639


>gi|260768782|ref|ZP_05877716.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972]
 gi|260616812|gb|EEX41997.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972]
          Length = 397

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/474 (10%), Positives = 110/474 (23%), Gaps = 78/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N ++Q+  +I  NI N     +    T              +        +
Sbjct: 2   SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVYNGQQAGGVQVMG---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              A  S     R L             D                 +    + +   L  
Sbjct: 59  NFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTGGSLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D                                        +  +   +    A   
Sbjct: 119 YTVDGNN-------------------------------NLLAGSMGPLKVDMSSLEAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +  DF    D  +  I            ++    YT   T ++++   +    +    T 
Sbjct: 148 NKVDFAANLDDRVDAIDTKENPFDPKNVDSYNNSYT---TPVYDSKGNEHTLTQYFVKTG 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +      I     S+   +         L       +                      
Sbjct: 205 DNTWEIHSIVDGDTSTLTTTPATFDSKGNLTSATAYTI---------------------- 242

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I+  +    QY S+    ++  +      +  
Sbjct: 243 -----------------SASAAGADTLNITVDMTNLSQYGSDFVVSKNNPNGYTSGSFTD 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  +       +A  N    L++   ++  W +   S      +  
Sbjct: 286 IRVEANGMVYATYSNGQSLLQGQLVLANFNAPQELMQ--TSNTAWTQTYGSGQPVYGIPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              F  ++        V+L  EL  L+  +++Y  + K I   D+++ +L   V
Sbjct: 344 SGQFGELASGVLEGSNVDLTSELVHLMSAQRNYQANTKTITTADQLMMSLFNAV 397


>gi|239906284|ref|YP_002953024.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1]
 gi|239796149|dbj|BAH75138.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1]
          Length = 518

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 52/519 (10%), Positives = 125/519 (24%), Gaps = 45/519 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSENK 60
           +      +     SQ  A+   N+ N +   Y     +     +      +  +Q     
Sbjct: 2   SSIWTGVSGLLTYSQGIATTGNNLANVNTVGYKSSRMLFADMISTMAGGTSDGSQIGTGV 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKE---MMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +    L     ++             E    +  D   + +                 +
Sbjct: 62  QVGSIALQTEVGSLQDASNSTDLAITGERGYFVVKDAANDKTYYTRAGDFNFDKNGNLMS 121

Query: 118 LSEDILGKTVIDNAEEVVQNFNT----------SAREVQKIRADADKEIELEISNLRRFL 167
            +   +    +D    +    N           +  ++       D +    +  +    
Sbjct: 122 ATGCNVQGWAVDQDAILKAKRNNVILSEVPTTGTVTDITIKDFTIDPQATGTMEVVTNLD 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           S+ +V          +    +D  +   V        I I       +   VY S  +  
Sbjct: 182 SQSSVGELDATDPYFTMFKNYDATNDTPVADSDYQATIKIYDSNGVAHTATVYYSKTSDN 241

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGV-----------------VVSSNQGSAVPKG 270
                 +           ++ ++     GV                    +  GS     
Sbjct: 242 SGKEYWEYMVTVPPEEDGSATTSGTTKAGVLMVGTLTFSAQGVLENQTAFTPNGSDPTSL 301

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLI---------GSFSEKDPIAGNSENVPGLFIAD 321
                  +  S VP F       +                S  D    +        I  
Sbjct: 302 SNWTQASLTSSGVPEFSATFKSASNGSALPSQTIAFKTGLSATDGSWNSGSAANAGAIGT 361

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
                           +     Y ++            K      N+     +   + + 
Sbjct: 362 NAALNIGYNPSSTLNAVYCTTNYATSSYTQTSSQDGYAKGEMTATNVDENGVIWGSFTNG 421

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             K      +A       L     N +       S    +   +  VF+ I+ +   +  
Sbjct: 422 QTKALYVLALADFTNPTDLYRNGNNLLSP--TTESGKATVGRANSGVFDSIAGNTLESSN 479

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V++  E+  LI  ++++  ++K++   + +++T L+  K
Sbjct: 480 VDMASEMVNLIINQRAFQANSKVVTTAESLMETALQIKK 518


>gi|73539450|ref|YP_299817.1| flagellar hook protein FlgE [Ralstonia eutropha JMP134]
 gi|72122787|gb|AAZ64973.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078:Flagellar basal body FlaE [Ralstonia eutropha
           JMP134]
          Length = 417

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/476 (9%), Positives = 104/476 (21%), Gaps = 63/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F +  +  N A+     I  NI N++   Y               +    T  S  ++ 
Sbjct: 2   GFGQGVSGINAAAANLDVIGNNIANSNTVGYKASTAQFADVYAGTKIGLGTTVNSVVQSF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               + A + ++       S               +       +   + +    N     
Sbjct: 62  TQGNIQATNRSLDVAITNGSGF-----FRLVGTDGSVHFSRNGQFARTDDGRIVNAQGLQ 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L       +              Q                                 K  
Sbjct: 117 LTGFPPAGSGGGALPQPLVVSSAQMPPKPTGN------------------------IKVG 152

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              D+   +                 T        +   S+  T+++++           
Sbjct: 153 YNLDSRSSVPATAFSSTAADPTATPPTPAALPTSDMYSYSNSMTVYDSLGNSQQLVAYFG 212

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            + +  +     D  +  ++    V  G    L    +  +         + + +     
Sbjct: 213 KSSSGPTVTGGTDWTMNVTDAAGNVMGGSPITLAFDSNGKLTSTSPATITLTKTMTN--- 269

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          +   +    Q+ S+   +           
Sbjct: 270 -------------------------GASDLSMKLDLAGTTQFGSDNDVMSPSQDGYASGA 304

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                + G   +   Y +   +      +A       L     N   W     S    + 
Sbjct: 305 LLGFAIEGDGTVRASYSNEQTQVLGQVVLASFGNPEGLKPEGGN--TWAATGASGEAIVG 362

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +  S      V+L  EL  LI  +++Y  + K I   ++++ +L+  
Sbjct: 363 APG-GARGQLLSSAVEASNVDLSGELVNLIVAQRNYQANAKTIETQNQVMNSLMNM 417


>gi|239906013|ref|YP_002952752.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1]
 gi|239795877|dbj|BAH74866.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1]
          Length = 550

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/549 (8%), Positives = 110/549 (20%), Gaps = 72/549 (13%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQR 56
            L        +     S +  +I  N+ N +   +    T               V    
Sbjct: 4   GLGTSMWSGVSGLLANSTKMGTIGNNLANVNTYGFKGARTDFMDLMSANVGTAAGVKQIG 63

Query: 57  S------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-------NNSPTHY 103
                     +     L   S  +        F  +K+      +          +    
Sbjct: 64  RGVRVGTIVSDYSQGGLETTSENLDMAISGNGFFMVKQKSQVGSNGKMLNTGNTTTYYTR 123

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAE------------------------------- 132
                   + Y        +    +D                                  
Sbjct: 124 AGDFSFDSDGYLVTPQGLAVQGWKVDQDRIDAASASGTVLSQVPVTGEIQDIRLTQFTSP 183

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
               +  T   ++       +                    + A+              D
Sbjct: 184 AKATSSVTMVTQLDSDTTTQNTRTAGTNYYYAMTEQWDGTASPAMPSTAYGYQSTLKVYD 243

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTS----------------DGTTLFETVPRDIN 236
           +             + +    +      T                    T    +   + 
Sbjct: 244 ENGSPHTLTVYYDKVVSEDGKDYWEYCVTCDPSEDGRVDSAGNPIAGTETAGLLMTGTMT 303

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           F+   S    S       +      +                  +   +      +    
Sbjct: 304 FDSSGSLENMSAYTLQASNATGGPFDATQWAAASVKNGYPVFTANFKSVSDASFTDSPNA 363

Query: 297 LIGSFSEKDPIAGNSENVPGLFI-----ADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           L  +F+         +      +     A    +L +           V   Y ++ S +
Sbjct: 364 LNIAFNVGISNTTGFQPGATGTLLSAAAAHDPDELVSFNPSTTKVNSTVTTSYATSSSTV 423

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               +     L    ++     L   + +   +      +A       L     N     
Sbjct: 424 FSSQNGYTSGLLTSVSVDSDGILTGTFSNGQTQKLWALALANFTNLQGLSRQGSNLYA-- 481

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S     +  +      IS +   T  V+L  E+  +I  ++ +  ++K I   D M
Sbjct: 482 ATLDSGQGTTNRANTGSVGSISGNTLETSNVDLATEMVSMILTQRGFEANSKTITTVDSM 541

Query: 472 LQTLLEGVK 480
           L  +++  +
Sbjct: 542 LSEVIQLKR 550


>gi|283850813|ref|ZP_06368099.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. FW1012B]
 gi|283573736|gb|EFC21710.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. FW1012B]
          Length = 709

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/415 (10%), Positives = 129/415 (31%), Gaps = 16/415 (3%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQRSE 58
             ++  + +         NI N D + Y ++  +T                V        
Sbjct: 10  IGRSALSTSQAALQVTGNNIANVDTEGYSKQTLITKDGSYVSGSAGQLGSGVVAQEVVRS 69

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +    +       +A  + + L +  +  + +  ++  +      +S L       + N 
Sbjct: 70  HDQFIEAQYLQRGTARDRFQTLYAGLSSMQNL-VNESNSKGVNASLSNLFGDWGDLTGNT 128

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                 +T++D+   ++  + + +  ++++R+ AD+ I  ++  + +   ++  +N  I 
Sbjct: 129 DSAATRQTMLDDTNTLLGLYRSMSSSIEQLRSQADQAIAADVETVNQLAKDIADLNKQIN 188

Query: 179 FKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD--I 235
                  +  +   D RD  ++++S ++ ++ I     ++ V T+ G T+ + +      
Sbjct: 189 STQVDGQNIPNGLYDARDKKIRELSALVDVNVIDNGRGNLTVNTNAGQTIVDGMVSYEFK 248

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +      ++S+S     D         ++    ++K    +       F+  LD    
Sbjct: 249 YEQGKTVRQLSSDSITAGSDVQAYYEGSDTSEYTLRVKTSGGLGGVGGATFEASLDGGKT 308

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L            + +          +           + T+     +   P       
Sbjct: 309 WLTNDDGTVATFQADGDTGKVKVGDLDVWFGSTTDPTDATGTLEEGDTFTLVPKKALYWY 368

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDS--FNKNFIFDPVAGINTNVTLLEYARNSI 408
           + +   +       G                 F+F      +   TL   A++ +
Sbjct: 369 TTAGTPVNVTPQQYGDGTDNPSRLTGGSLTGTFLFRDEELGSYQKTLDAMAKSLV 423



 Score = 99.7 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                 F  D    L       +           ++                +    +G 
Sbjct: 541 TGSSFRFGDDSSGALAALGVNTLLTGSTAGDVAVNSVVASDTNKVCVGHVGADGLLASGD 600

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
                      +K+  F        + TL EY    +G +  + +++         +   
Sbjct: 601 NTTAKALAALEDKDISFYVTGQAPVSQTLGEYYSGLVGKIGSDTANASYQASYQSTLAAQ 660

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  +  +  GVNL EEL+ +IK + SY  + KLI   D++++T+L   
Sbjct: 661 LDAAQLSASGVNLDEELTNMIKFQHSYQAAAKLISTADQLMETVLGLK 708


>gi|225181603|ref|ZP_03735044.1| protein of unknown function DUF1078 domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167711|gb|EEG76521.1| protein of unknown function DUF1078 domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 408

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/479 (8%), Positives = 103/479 (21%), Gaps = 72/479 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +   N   +   I  NI N +   +                         +
Sbjct: 1   MQRSLFTGVSGLRNHQTKMDVIGNNIANVNTTAFKAGRVRFQD----------------I 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + +   S+              +  +       ++     S             ++  
Sbjct: 45  LSQNIRGASAPQD---GRGGINPAQVGLGMSVASIDTIHTPGSLQSTGR------PTDLA 95

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +  +      +    F +                      L         +N     +  
Sbjct: 96  IQGSGFFVMSDGANEFYSRDGAFSLGSDGDLVNGANGFKPLGWQADAFGNINTNGPLQPL 155

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV-VYTSDGTTLFETVPRDINFEKMN 241
           +    H+   +    L   S +  ++ I   +     VY S G +    +          
Sbjct: 156 NIPLGHNVTTRATENLTFSSNLDSLAEIGTEHMAESLVYNSQGGSHLVEIIFTKTGSNTW 215

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            +  +  +    + G                                             
Sbjct: 216 EWEASGITGNETVSGQGTIEFDE------------------------------------- 238

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                    +        A  I D+D      ++       Q   + +            
Sbjct: 239 -------FGNLLQATGDAAISITDIDGADDISMAVDFNNMSQVVGHSNAQVRYQDGFPAG 291

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +     +   Y +          +A  +    L++ A N   +   + S    +
Sbjct: 292 ELTEFTIGKTGVISGIYTNGLVVELGQIALASFDNPEGLMKAAGNM--YQVSSNSGQARV 349

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                     I         V+L  E + +I   + +  ++++I  +D +LQ ++   +
Sbjct: 350 GGAGLEGRGVIETGTLEMSNVDLSYEFTEMITTSRGFQANSRVITTSDDLLQEVVNLKR 408


>gi|157371207|ref|YP_001479196.1| flagellar hook protein FlgE [Serratia proteamaculans 568]
 gi|157322971|gb|ABV42068.1| flagellar basal body FlaE domain protein [Serratia proteamaculans
           568]
          Length = 407

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          +N 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   S A+        F  +++                 + +        N+    
Sbjct: 62  KGGTTTGTSRALDVAISGNGFFRMQDQ------DGGVFYSRNGQFKLDENRNLTNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                                     N        
Sbjct: 116 LTGYPAAGTPPTIQQ----------------------------------GANPVPLSIPE 141

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +A        V   K +  +  +              +  T ++++    N      
Sbjct: 142 GMMNAKASTSGTMVANLKSTHKVPDNKTFDPAKQDSYNYVNTITAYDSLGNAHNINAYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  ++      DG     + G+                                  S +
Sbjct: 202 KTDENKWQVYTQDGSAAPVDAGTM-----------------------------TFDTSGN 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                +          +                       Q  S  S  +          
Sbjct: 233 LTGTTSKQGTAAEFSMLVPMSAKDGAPAQNLSLSFAKSMQQSVSADSVSKVSQDGYGAGE 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +   +      +A  +    L     N   W E   S    + 
Sbjct: 293 YTNFQINNDGTVVGIYSNQQTQVLGQIVMANFSNPEGLSSQGDNV--WQETGASGQPRVG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  ++        V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 351 IAGGGGFGKLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 406


>gi|26247216|ref|NP_753256.1| flagellar hook protein FlgE [Escherichia coli CFT073]
 gi|227886566|ref|ZP_04004371.1| flagellar hook protein FlgE [Escherichia coli 83972]
 gi|300974380|ref|ZP_07172592.1| flagellar hook protein FlgE [Escherichia coli MS 45-1]
 gi|26107617|gb|AAN79816.1|AE016759_90 Flagellar hook protein flgE [Escherichia coli CFT073]
 gi|227836770|gb|EEJ47236.1| flagellar hook protein FlgE [Escherichia coli 83972]
 gi|300410623|gb|EFJ94161.1| flagellar hook protein FlgE [Escherichia coli MS 45-1]
 gi|307553078|gb|ADN45853.1| flagellar hook protein FlgE [Escherichia coli ABU 83972]
 gi|315291070|gb|EFU50433.1| flagellar hook protein FlgE [Escherichia coli MS 153-1]
          Length = 401

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNKWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++S+    +  G I                              
Sbjct: 220 GTAEPAMTLVFNANGVLTSDPTKDITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|299068738|emb|CBJ39977.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum
           CMR15]
          Length = 642

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 133/407 (32%), Gaps = 15/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N        A         NI NA    Y R++ + T +           + V V 
Sbjct: 3   SSLLNIGATGLRVADINLQVTGNNISNASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  +A      L S  +  +   +D   N+     ++   ++ +S
Sbjct: 63  TVKRIYDQFLTAQVQSGQAASSAADQLNSLVSGLDTYMSD--SNSGLGSALTSFFNAADS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  +  A  +   FN  + ++  +    + +++ +++++     ++  +
Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAISGQMASLSNQVNTQVQTQVNSVNSTTQQIAAL 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ND I    A+     A+D  DQRD L+Q +++ I  S +  ++    +Y  +G  L +  
Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGN 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    + Y  T  S         VS +  S +  G +  L+Q R + +   QN L 
Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNTLIPAQNSLG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    + ++    +     G  +                          +N    
Sbjct: 300 RLAAAVSADVNTQNKEGMDLNGKLGSDLFSTAGPSVAASSSNTGTGALTATITNANAGQG 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V +       +         + +   + G   + 
Sbjct: 360 YDYQVKYSGGSYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASG 406



 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +         R +   +   +  +  +++ Q    Q    +    +      +
Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGNQS 242

Query: 99  SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                ++       L    K+ +  +           +          +   +    +  
Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNTLIPAQNSLGRLA 302

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +++     E   +N  +     S           +     ++  I  +   +  + 
Sbjct: 303 AAVSADVNTQNKEGMDLNGKLGSDLFSTAGPSVAASSSNTGTGALTATITNANAGQGYDY 362

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261
            V Y+    T+             +  T                        ++      
Sbjct: 363 QVKYSGGSYTVSHYPDGSGAVTVSSWPTTVDGVTLNLTGSMASGDSFLVRPTVNAASTMQ 422

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              S        + + +           +  +      + +        + +   L    
Sbjct: 423 TLTSDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSPVSLTYSGGSLSGFP 482

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   +                Q  +                 +   ++          ++
Sbjct: 483 GSVTVTANGTSTTYSGTAPYTQGATYSFNGIQMSLSGTPAANDTFTVSANTANSTDGHNA 542

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + +     N   ++     N +  +    S +       + +    +    +  G
Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQASQASANVTSQKALLASSTSQQQSVSG 602

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL +E   L+K +Q+Y  S K++   + +  +LL  
Sbjct: 603 VNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSI 639


>gi|74311638|ref|YP_310057.1| flagellar hook protein FlgE [Shigella sonnei Ss046]
 gi|157157539|ref|YP_001462310.1| flagellar hook protein FlgE [Escherichia coli E24377A]
 gi|191168462|ref|ZP_03030250.1| flagellar hook protein FlgE [Escherichia coli B7A]
 gi|193064513|ref|ZP_03045593.1| flagellar hook protein FlgE [Escherichia coli E22]
 gi|194438060|ref|ZP_03070153.1| flagellar hook protein FlgE [Escherichia coli 101-1]
 gi|209918330|ref|YP_002292414.1| flagellar hook protein FlgE [Escherichia coli SE11]
 gi|218694610|ref|YP_002402277.1| flagellar hook protein FlgE [Escherichia coli 55989]
 gi|253773900|ref|YP_003036731.1| flagellar hook protein FlgE [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161182|ref|YP_003044290.1| flagellar hook protein FlgE [Escherichia coli B str. REL606]
 gi|256018667|ref|ZP_05432532.1| flagellar hook protein FlgE [Shigella sp. D9]
 gi|260843316|ref|YP_003221094.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009]
 gi|260854559|ref|YP_003228450.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368]
 gi|260867439|ref|YP_003233841.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128]
 gi|293433366|ref|ZP_06661794.1| flagellar hook protein FlgE [Escherichia coli B088]
 gi|300816778|ref|ZP_07096998.1| flagellar hook protein FlgE [Escherichia coli MS 107-1]
 gi|300821143|ref|ZP_07101292.1| flagellar hook protein FlgE [Escherichia coli MS 119-7]
 gi|300902467|ref|ZP_07120449.1| flagellar hook protein FlgE [Escherichia coli MS 84-1]
 gi|300922602|ref|ZP_07138702.1| flagellar hook protein FlgE [Escherichia coli MS 182-1]
 gi|300928372|ref|ZP_07143906.1| flagellar hook protein FlgE [Escherichia coli MS 187-1]
 gi|301304985|ref|ZP_07211087.1| flagellar hook protein FlgE [Escherichia coli MS 124-1]
 gi|301328554|ref|ZP_07221615.1| flagellar hook protein FlgE [Escherichia coli MS 78-1]
 gi|309798070|ref|ZP_07692445.1| flagellar hook protein FlgE [Escherichia coli MS 145-7]
 gi|331667476|ref|ZP_08368340.1| flagellar hook protein FlgE [Escherichia coli TA271]
 gi|331676867|ref|ZP_08377563.1| flagellar hook protein FlgE [Escherichia coli H591]
 gi|332279736|ref|ZP_08392149.1| flagellar hook protein FlgE [Shigella sp. D9]
 gi|73855115|gb|AAZ87822.1| flagellar hook protein [Shigella sonnei Ss046]
 gi|157079569|gb|ABV19277.1| flagellar hook protein FlgE [Escherichia coli E24377A]
 gi|190901481|gb|EDV61242.1| flagellar hook protein FlgE [Escherichia coli B7A]
 gi|192927765|gb|EDV82379.1| flagellar hook protein FlgE [Escherichia coli E22]
 gi|194422996|gb|EDX38990.1| flagellar hook protein FlgE [Escherichia coli 101-1]
 gi|209911589|dbj|BAG76663.1| flagellar hook protein FlgE [Escherichia coli SE11]
 gi|218351342|emb|CAU97048.1| flagellar hook protein [Escherichia coli 55989]
 gi|253324944|gb|ACT29546.1| flagellar basal body FlaE domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973083|gb|ACT38754.1| flagellar hook protein E [Escherichia coli B str. REL606]
 gi|253977297|gb|ACT42967.1| flagellar hook protein E [Escherichia coli BL21(DE3)]
 gi|257753208|dbj|BAI24710.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368]
 gi|257758463|dbj|BAI29960.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009]
 gi|257763795|dbj|BAI35290.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128]
 gi|291324185|gb|EFE63607.1| flagellar hook protein FlgE [Escherichia coli B088]
 gi|300405499|gb|EFJ89037.1| flagellar hook protein FlgE [Escherichia coli MS 84-1]
 gi|300421079|gb|EFK04390.1| flagellar hook protein FlgE [Escherichia coli MS 182-1]
 gi|300463630|gb|EFK27123.1| flagellar hook protein FlgE [Escherichia coli MS 187-1]
 gi|300526442|gb|EFK47511.1| flagellar hook protein FlgE [Escherichia coli MS 119-7]
 gi|300530552|gb|EFK51614.1| flagellar hook protein FlgE [Escherichia coli MS 107-1]
 gi|300839703|gb|EFK67463.1| flagellar hook protein FlgE [Escherichia coli MS 124-1]
 gi|300844946|gb|EFK72706.1| flagellar hook protein FlgE [Escherichia coli MS 78-1]
 gi|308118353|gb|EFO55615.1| flagellar hook protein FlgE [Escherichia coli MS 145-7]
 gi|313848602|emb|CAQ31597.2| flagellar hook protein FlgE, subunit of Flagellum [Escherichia coli
           BL21(DE3)]
 gi|315253877|gb|EFU33845.1| flagellar hook protein FlgE [Escherichia coli MS 85-1]
 gi|323156883|gb|EFZ43017.1| flagellar hook protein flgE [Escherichia coli EPECa14]
 gi|323163758|gb|EFZ49577.1| flagellar hook protein flgE [Escherichia coli E128010]
 gi|323165584|gb|EFZ51371.1| flagellar hook protein flgE [Shigella sonnei 53G]
 gi|323175693|gb|EFZ61287.1| flagellar hook protein flgE [Escherichia coli 1180]
 gi|323185801|gb|EFZ71162.1| flagellar hook protein flgE [Escherichia coli 1357]
 gi|323947622|gb|EGB43626.1| fagellar hook-basal body protein [Escherichia coli H120]
 gi|323962675|gb|EGB58253.1| fagellar hook-basal body protein [Escherichia coli H489]
 gi|323973335|gb|EGB68524.1| fagellar hook-basal body protein [Escherichia coli TA007]
 gi|324017420|gb|EGB86639.1| flagellar hook protein FlgE [Escherichia coli MS 117-3]
 gi|324117353|gb|EGC11260.1| fagellar hook-basal body protein [Escherichia coli E1167]
 gi|331065061|gb|EGI36956.1| flagellar hook protein FlgE [Escherichia coli TA271]
 gi|331075556|gb|EGI46854.1| flagellar hook protein FlgE [Escherichia coli H591]
 gi|332102088|gb|EGJ05434.1| flagellar hook protein FlgE [Shigella sp. D9]
          Length = 401

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|84388091|ref|ZP_00990987.1| flagellar hook protein [Vibrio splendidus 12B01]
 gi|84377158|gb|EAP94028.1| flagellar hook protein [Vibrio splendidus 12B01]
          Length = 434

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/481 (8%), Positives = 114/481 (23%), Gaps = 60/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQRS 57
             A +  + A     +   NI NA+   +                               
Sbjct: 3   YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQASQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +     +               + ++Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINE---LTRNGAFHLNKDNYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L                        +  ++ + +      L              
Sbjct: 120 ANDEFLLGY--------------------DVDPNSGEVLSYAPKPLDIPAEFGKPKQTEN 159

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +     D  D      Q        ++    ++    Y      L +    +   
Sbjct: 160 IEVGVNLPANGDLKDPAAFNYQDADTYNRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQ 219

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                     E       G   ++             +    D  +    N     +  L
Sbjct: 220 TYYTMSDENGEKPVNITGGDATNAQGHVGHT------MKFNNDGTLASLNNGQPINSEAL 273

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
               +  D    +                     Q +   +  + Q+ +     +     
Sbjct: 274 GAGANPIDLNGADP-------------------TQVLKFGLDSSTQFAAPFELTKFDEDG 314

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +   Y  ++  Y +  N       +  +     L +  +    W   N S 
Sbjct: 315 ATTGFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDK--KGGTQWDSTNDSG 372

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S      ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 373 SKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432

Query: 478 G 478
            
Sbjct: 433 I 433


>gi|300918678|ref|ZP_07135259.1| flagellar hook protein FlgE [Escherichia coli MS 115-1]
 gi|300414172|gb|EFJ97482.1| flagellar hook protein FlgE [Escherichia coli MS 115-1]
          Length = 401

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++  V   N   +      T               +
Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFVSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|300722682|ref|YP_003711972.1| flagellar hook protein [Xenorhabdus nematophila ATCC 19061]
 gi|139522504|gb|ABO77656.1| FlgE [Xenorhabdus nematophila]
 gi|297629189|emb|CBJ89785.1| flagellar biosynthesis; hook protein [Xenorhabdus nematophila ATCC
           19061]
          Length = 398

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 111/476 (23%), Gaps = 83/476 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          +N 
Sbjct: 2   SFSQAVSGLNAAASNLDVIGNNISNSATFGFKSSSAAFADVFSGSEVGLGVKVSGMVQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++         N       + +   +    N+    
Sbjct: 62  KDGSTTTTNRKLDMAINQGGFFRMQD------SNGNILYSRNGQFKMDEDRNLINMQGMK 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           V         V  I    D       + +    +              
Sbjct: 116 LTGYPA------VNGEIQIGGAVGPISIPTDMLDAKATTEITLKANLS------------ 157

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S    I+     +       S    +F+++    +      
Sbjct: 158 -------------------SMETAITGEFDPDKKDTFNYSAPLQVFDSLGNQHDINVFFV 198

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  ++     +D  V  +        G+++     +   +P F+ ++  +        +
Sbjct: 199 KTDNNKWTAHALDRSVAGAKP---QELGELEFNTSGQMKDIPPFKFEVPALNGSAAAQIN 255

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   +                                      +    +  G +     
Sbjct: 256 IELNGSKQQSIAQNSISPPKQDGYAAGHFTDYRVDDDGKIYGVYSNDQKQVLGQIVLANF 315

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N + LA   D +                          E   +    +    S +    
Sbjct: 316 ANPEGLAAQGDNVWA------------------------ESGASGSSVIGVAGSGN---- 347

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   ++         V++ +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 348 ------LGNLISGALEASNVDMSQELVNMIVSQRNYQSNAQTIKTQDQILQTLVSM 397


>gi|163802603|ref|ZP_02196495.1| flagellar hook protein E [Vibrio sp. AND4]
 gi|159173686|gb|EDP58505.1| flagellar hook protein E [Vibrio sp. AND4]
          Length = 437

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/471 (8%), Positives = 114/471 (24%), Gaps = 37/471 (7%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
             + +  ++A     +   NI NA+   +            N                  
Sbjct: 3   YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNS------------LFSNA 50

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
                   Q   +         +  ++  +   +        + E  +   +E       
Sbjct: 51  KTTPGGGAQASQVAQQFHEGSSIYTNNPMDLRISGT-GFFSVAKERLTPQQNEMTRNGAF 109

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
             N +  +   N       ++  D+ +    E   +                   +    
Sbjct: 110 HLNKDNYMVTANDEFLLGYQVDPDSGEVASYEPQAINIPAEFGKPKQTENIEVGVNLPAN 169

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
            D  D               ++    ++    Y      L +    +             
Sbjct: 170 ADLKDPAQFDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQNQPNTWQTYYTVTDKDG 229

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           E      +G   S    +      IK       + +   Q            + +  D  
Sbjct: 230 EKPLNVANGDAASP---TGHVGHTIKFNNDGTLASLNSGQPITSVAMGDPATNTTPVDLN 286

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             + E                   Q ++  +    Q+ +     +     +        +
Sbjct: 287 GADPE-------------------QTLNFGLNSATQFAAPFELTKFDEDGATTGFLTKVD 327

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                +++  Y +  N       +  +     L +  +    W     S +      ++ 
Sbjct: 328 FDENGNVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQNSGAKVWGESNKG 385

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            F  IS        +++ +EL  LI  ++++  +++ +   +++ Q +L+ 
Sbjct: 386 SFGTISNGTLEQSNIDMTQELVDLISAQRNFQANSRALEVDNQLQQNILQI 436


>gi|28897552|ref|NP_797157.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839685|ref|ZP_01992352.1| FlgE [Vibrio parahaemolyticus AQ3810]
 gi|260364611|ref|ZP_05777213.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030]
 gi|260878284|ref|ZP_05890639.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034]
 gi|260898114|ref|ZP_05906610.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466]
 gi|5361008|gb|AAD42915.1|U12817_9 polar flagellar FlgE homolog [Vibrio parahaemolyticus]
 gi|28805764|dbj|BAC59041.1| polar flagellar FlgE [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746795|gb|EDM57783.1| FlgE [Vibrio parahaemolyticus AQ3810]
 gi|308086119|gb|EFO35814.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466]
 gi|308090147|gb|EFO39842.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034]
 gi|308115102|gb|EFO52642.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030]
 gi|328473453|gb|EGF44301.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329]
          Length = 437

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/481 (8%), Positives = 111/481 (23%), Gaps = 57/481 (11%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N                  
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + E+Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKENYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    ++     V ++       +    +   E           +      N  +
Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K  T          D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +     + +            +       G + +L                     +
Sbjct: 225 TDKSGEKPLNVAGGDAQTPTGHIGHTMKFNNDGTLASLNSGN-------------PITSV 271

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  +    +          +                     Q+ +     +     
Sbjct: 272 ALGDPATNTTPLDMNGADPAQTLNFGLGAA--------------TQFAAPFELTKFDEDG 317

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435

Query: 478 G 478
            
Sbjct: 436 I 436


>gi|281178185|dbj|BAI54515.1| flagellar hook protein FlgE [Escherichia coli SE15]
          Length = 401

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWDVYTLDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++S+    +  G I                              
Sbjct: 220 GTANPATTLVFNANGVLTSDPTKDITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|269961599|ref|ZP_06175961.1| flagellar hook protein [Vibrio harveyi 1DA3]
 gi|269833640|gb|EEZ87737.1| flagellar hook protein [Vibrio harveyi 1DA3]
          Length = 437

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/481 (8%), Positives = 118/481 (24%), Gaps = 57/481 (11%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  ++A     +   NI NA+   +       +    N                  
Sbjct: 3   YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + ++Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKDNYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    ++     V ++       +    +   E           +      N  +
Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K  T          D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +N           +       G + +L           Q          
Sbjct: 225 TDKGGEKPLNVANGDAATPTGHVGHTMKFNNDGTLASLN--------NGQPITSVALGDP 276

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + +  D    +                     Q ++  +    Q+ +     +     
Sbjct: 277 ATNANPVDLNGADP-------------------AQTLNFGLGSATQFAAPFELTKFDEDG 317

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 435

Query: 478 G 478
            
Sbjct: 436 I 436


>gi|260901953|ref|ZP_05910348.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037]
 gi|308106765|gb|EFO44305.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037]
          Length = 437

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/481 (8%), Positives = 111/481 (23%), Gaps = 57/481 (11%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N                  
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + E+Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKENYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    ++     V ++       +    +   E           +      N  +
Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGMNLPANGDL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K  T          D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +     + +            +       G + +L                     +
Sbjct: 225 TDKSGEKPLNVAGGDAQTPTGHIGHTMKFNNDGTLASLNSGN-------------PITSV 271

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  +    +          +                     Q+ +     +     
Sbjct: 272 ALGDPATNTTPLDMNGADPAQTLNFGLGAA--------------TQFAAPFELTKFDEDG 317

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435

Query: 478 G 478
            
Sbjct: 436 I 436


>gi|253998488|ref|YP_003050551.1| flagellar hook protein FlgE [Methylovorus sp. SIP3-4]
 gi|253985167|gb|ACT50024.1| flagellar basal body FlaE domain protein [Methylovorus sp. SIP3-4]
          Length = 402

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/473 (10%), Positives = 111/473 (23%), Gaps = 73/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+    I  N+ NA+   + +          N                
Sbjct: 2   SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANA--------------- 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G   +      ++   +  +  N      I+   +     S + +      
Sbjct: 47  ---LNGSGTGSAGIGVKVADIQRQFTQGNITNTENPLDIAINGNGFFRLSNSGAITYSRN 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +               I   + + +   +++    L    + +  I     +  
Sbjct: 104 GQFQLDKAGY------------IVTSSGEHLTGYVADSNGALQTGALTDIKINSADLAPQ 151

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            +    D  +                                          +  ++   
Sbjct: 152 ASTKVSDVFN-----------------------------------------LDSRSAVLP 170

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +P                 +G    L            +    +        S + 
Sbjct: 171 IASFDPADPTTYTQVVPISVYDSQGNPHTLQSYLIKTAANTWDVRTTVDGGTTAVGSSQL 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               N            +        Q I+     + Q+ S+ S              + 
Sbjct: 231 TFDTNGLLTGTTTQTVTLAPPTVPAAQSITVDFASSTQFGSDYSLNSQVQDGYASGRLSS 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            + A    +I  Y +   K      +A       L     N     E + +    +    
Sbjct: 291 FSTAADGTIIGRYTNGQAKALAQVVLAKFANPNGLAALGNNQFA--ETSDAGVPVIGKAG 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  S +    V+L  EL  +I  ++ Y  + + I   D++LQTL+  
Sbjct: 349 TGGLGVLQSSATEDSNVDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVNL 401


>gi|153834474|ref|ZP_01987141.1| FlgE [Vibrio harveyi HY01]
 gi|156973586|ref|YP_001444493.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116]
 gi|148869170|gb|EDL68202.1| FlgE [Vibrio harveyi HY01]
 gi|156525180|gb|ABU70266.1| hypothetical protein VIBHAR_01289 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/481 (8%), Positives = 118/481 (24%), Gaps = 57/481 (11%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  ++A     +   NI NA+   +       +    N                  
Sbjct: 3   YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + ++Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEM---TRNGAFHLNKDNYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    ++     V ++       +    +   E           +      N  +
Sbjct: 120 ANDEFLLGYQVNPESGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K  T          D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWQTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +N           +       G + +L           Q          
Sbjct: 225 TDKGGEKPLNVANGDAATPTGHVGHTMKFNNDGTLASLN--------NGQPITSVALGDP 276

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + +  D    +                     Q ++  +    Q+ +     +     
Sbjct: 277 ATNTNPVDLNGADP-------------------AQTLNFGLGSATQFAAPFELTKFDEDG 317

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 435

Query: 478 G 478
            
Sbjct: 436 I 436


>gi|242277990|ref|YP_002990119.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens
           DSM 2638]
 gi|242120884|gb|ACS78580.1| flagellar hook-associated protein FlgK [Desulfovibrio salexigens
           DSM 2638]
          Length = 694

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 15/241 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           L  +F+  +    NA    +    N+ N     Y RR  +   S              T+
Sbjct: 2   LGNIFSIGRGAMQNAQIGLSVHGNNVANLKTPGYRRRTVIQDESMSIREGRWSYGTGATI 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + R       ++ +   S    +        ++ E     +  +      +  +  + +
Sbjct: 62  DSIRRNLSQFLERGVLDKSPEFSRWNAEAGNLSMVEKFF-VESKDAGIAKSMGDMWAAWQ 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           S + N         ++  A++     ++   ++++ +      ++ E+      + EL  
Sbjct: 121 SLADNPQLGANRVALVGAAQKFTAQLSSVVGDLRRQQDLITTHLKQEVGKANDAIKELAE 180

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I     +  + +  LD+RD++L+ +S ++ IS     +  ++V   +G  L E   
Sbjct: 181 LNKQI----IANPNDNTLLDRRDIVLRGLSSLVDISVQEEPSGQVIVSLGEGQKLVEGAK 236

Query: 233 R 233
            
Sbjct: 237 A 237



 Score = 93.2 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/394 (11%), Positives = 114/394 (28%), Gaps = 9/394 (2%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL-GKTVIDNAEEVVQNFNTSAREVQ 146
           E +      N++ T    K        S + +   L          +    +  +    +
Sbjct: 308 EKLFTAGGQNDAVTVGGVKFWFGKAGSSASAATTQLKDGDRFTLTPKSEVRWYKNTSTSE 367

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
            I   A  + E  +                  +       A     + +    + + ++ 
Sbjct: 368 SISPLAGNDGERRLKGGSIAGLLRARDEKIGSYIEKLNAFAKSIAWEVNRAHSQGAGLVN 427

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            +  +              +      +  +     ++   +    + +  V  SS     
Sbjct: 428 HANTIGTYEVRDSTVPLAKSNLPYADKLTSGSFSMAFYSATTGKKVSVSAVDFSSIPPGK 487

Query: 267 VP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                 + +L  +RD++   F  +   +      S            N     +A     
Sbjct: 488 KNFDPAVHSLENVRDAINASFPGKAQAVITDGKLSIKGLGDNRFQFSNDTSGVLA--GLG 545

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
           ++       + +I V+    ++PS +      +       +   G             K 
Sbjct: 546 INTFFEGHDAASIKVHESIEADPSKI-----GAAHVNGAGEVNKGDNATARAVAALTGKK 600

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            +     G +T  +  +Y  + +  +  + +D+      SQ V   + +   +  GV++ 
Sbjct: 601 NVNFKSGGTSTESSFNDYYSSLVATVGSDAADAKANLSISQTVLKGLVDKQESVGGVSID 660

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           EE+  +   ++SY  + +LI   ++M  TLL   
Sbjct: 661 EEMDIIASYQRSYRTAAQLIKTANEMFDTLLSLK 694


>gi|260774938|ref|ZP_05883839.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609193|gb|EEX35351.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450]
          Length = 434

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/471 (8%), Positives = 115/471 (24%), Gaps = 40/471 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
             A +  + A     +   NI NA+   +                      + ++F    
Sbjct: 3   YVALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDV-----------YSNSLFTHAK 51

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
                 +   ++ Q F     + + +                + +  +   +E       
Sbjct: 52  TTPGQGVQAAKVAQQFHEGSSIYTNNPMDLRVSGT--GFFAVAKDRLAPTTNELTRNGAF 109

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
             N +  +   N       ++  D    +  E S +            +      +    
Sbjct: 110 HLNKDNYMTTANDEFLLGYQVNKDTGDVLSYEPSPINIPKEFGKPKQTSNIDVGVNLPAG 169

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
            +  D               ++    ++    Y      L +    +             
Sbjct: 170 GELKDPALFDFSDPETYNRSTSSTIYDSMGQSYKLTTYYLKDQNQANTWQTYYTVTDSAG 229

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           E     + G   +              +    D  +    N  + ++  L    +  +  
Sbjct: 230 EKPINIVGGDATAPTGHVGHT------MRFNNDGTLASLNNGQNIVSEPLGTGATPVELN 283

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +                       +S  +    Q+ +     +     +        +
Sbjct: 284 GADVNQA-------------------LSFGLQDATQFAAPFELTKFDEDGATTGFLTKVD 324

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                 ++  Y +  N       +  +     L +  +    W     S +      ++ 
Sbjct: 325 FDENGSVLGTYSNGENIILGRVALVRVPNEQGLDK--KGGTQWDSTQFSGNKIWGESNKG 382

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            F  IS        +++ +EL  LI  ++++  +++ +   ++  Q +L+ 
Sbjct: 383 SFGTISSGVLEQANIDMTQELVDLISAQRNFQANSRSLEVHNQTQQNILQI 433


>gi|285018209|ref|YP_003375920.1| flagellar hook protein flge [Xanthomonas albilineans GPE PC73]
 gi|283473427|emb|CBA15932.1| probable flagellar hook protein flge [Xanthomonas albilineans]
          Length = 407

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/476 (9%), Positives = 111/476 (23%), Gaps = 74/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +    A+        NI N +   +                   R+   +    
Sbjct: 2   GFNTSLSGIKAANTDLNVTANNIANVNTTGFKSSRAEFADQFTVSGYGLARNAVGSGVRV 61

Query: 66  VLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I                    +            +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRNLDLAISGSGFFTLSNNGARVYSRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                 +   +  ++           S +    +              
Sbjct: 122 LQVFPPT-----ANGNGFAVGTLSDLQLQTTDSPPNPTSTVNLMFTLPGN---------- 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              ++   ++T   NN +    ++ GTT+++++           
Sbjct: 167 -------------------AQPPTVTTFDPNNANSYNSSTGGTTVYDSLGVSHIQTSYFV 207

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T T     ++     V++   S +       L    D  +                   
Sbjct: 208 KTATPNQWQVYNYIDGVAAGGASTLQFSGSGMLTSPADGKI------------------- 248

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                          ++  +  + QY    +             
Sbjct: 249 ----------------TLGSFTPSTGAGPLNLTLNVTGSTQYGETFALRGASQDGYASGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     +   Y ++ +K      ++       L     N   W E + S +    
Sbjct: 293 LNSISIDSSGVIFARYSNNADKALGQVAMSNFVNPQGLTSLGDN--AWAESSGSGAPRTG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     F  +      +  V+L E+L  +I  ++++  ++++I   D++ QT++  
Sbjct: 351 VAGSSDFGSVQSGALESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTVINI 406


>gi|15801193|ref|NP_287210.1| flagellar hook protein FlgE [Escherichia coli O157:H7 EDL933]
 gi|15830708|ref|NP_309481.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai]
 gi|168747148|ref|ZP_02772170.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113]
 gi|168758631|ref|ZP_02783638.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401]
 gi|168767735|ref|ZP_02792742.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486]
 gi|168773921|ref|ZP_02798928.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196]
 gi|168783606|ref|ZP_02808613.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076]
 gi|168790011|ref|ZP_02815018.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869]
 gi|168802021|ref|ZP_02827028.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508]
 gi|195935466|ref|ZP_03080848.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4024]
 gi|208809224|ref|ZP_03251561.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206]
 gi|208814886|ref|ZP_03256065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045]
 gi|208822570|ref|ZP_03262889.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042]
 gi|209395987|ref|YP_002269922.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115]
 gi|254792458|ref|YP_003077295.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14359]
 gi|261227019|ref|ZP_05941300.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256253|ref|ZP_05948786.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK966]
 gi|291282096|ref|YP_003498914.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
 gi|12514614|gb|AAG55822.1|AE005317_11 flagellar biosynthesis, hook protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360918|dbj|BAB34877.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai]
 gi|187770405|gb|EDU34249.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196]
 gi|188018069|gb|EDU56191.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113]
 gi|188999079|gb|EDU68065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076]
 gi|189354568|gb|EDU72987.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401]
 gi|189363151|gb|EDU81570.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486]
 gi|189370482|gb|EDU88898.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869]
 gi|189375951|gb|EDU94367.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508]
 gi|208729025|gb|EDZ78626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206]
 gi|208731534|gb|EDZ80222.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045]
 gi|208738055|gb|EDZ85738.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042]
 gi|209157387|gb|ACI34820.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115]
 gi|209773378|gb|ACI85001.1| flagellar hook protein FlgE [Escherichia coli]
 gi|209773382|gb|ACI85003.1| flagellar hook protein FlgE [Escherichia coli]
 gi|209773384|gb|ACI85004.1| flagellar hook protein FlgE [Escherichia coli]
 gi|209773386|gb|ACI85005.1| flagellar hook protein FlgE [Escherichia coli]
 gi|254591858|gb|ACT71219.1| flagellar hook protein [Escherichia coli O157:H7 str. TW14359]
 gi|290761969|gb|ADD55930.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
 gi|320189759|gb|EFW64415.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC1212]
 gi|320637527|gb|EFX07327.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. G5101]
 gi|320643088|gb|EFX12289.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. 493-89]
 gi|320648546|gb|EFX17201.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. H 2687]
 gi|320653860|gb|EFX21934.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320659340|gb|EFX26909.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664475|gb|EFX31626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. LSU-61]
 gi|326339298|gb|EGD63112.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1125]
 gi|326344741|gb|EGD68489.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1044]
          Length = 401

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                     +        +    Q     + +    +  K   
Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|209773380|gb|ACI85002.1| flagellar hook protein FlgE [Escherichia coli]
          Length = 401

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPA 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                     +        +    Q     + +    +  K   
Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|145297454|ref|YP_001140295.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850226|gb|ABO88547.1| lateral flagellar hook protein LfgE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 397

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 111/473 (23%), Gaps = 78/473 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+   +     +Q+ + I  N+ NA    +             V +           + 
Sbjct: 2   SFSIGLSGLRAVNQELSVISNNVANASTAGFKSSRAEFAAI-YGVEMNNVSQNFDR--NG 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +      +        F  LK+          +        +    +Y    +   L  
Sbjct: 59  DVMRTGKGLDLAISGSGFFVLKD------SNGQTSYTRAGMFQRDASNYLTTANGTRLQG 112

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
              ++A E+                                      +        A   
Sbjct: 113 YTTNDAGELQSGVV-------------------------------GDIQVKAGSLPAKAS 141

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D  +F+         I+     +     N       S  + +++++  +    +    T 
Sbjct: 142 DQLEFVANLKADASIITPPPPPAPAFDPNKSETFSYSQSSKVYDSLGTEHTVTQYFVKTG 201

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +  +     V    G+ +       L     ++                       
Sbjct: 202 ANAWDVHYTFNGAVVPPVGAKMNFDLNGKLDIAASTIPASL------------------- 242

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       +   +    QY S+ +  R+  +         
Sbjct: 243 -----------------ALAPAGASPIALQLDMSRVSQYASDFNATRNQSNGYAAGDLTG 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   + +  N       +A       L++   N+  W +   S    L    
Sbjct: 286 VKVDADGGVYATFTNGQNLLQGQVVMANFTNPNGLIQ--TNNTTWQQSFSSGQPVLGAPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 ++     +  V+L  EL  L+  +++Y  + K I   DKM Q L   
Sbjct: 344 TGTMGSLTAGAYESSNVDLTGELVSLMTSQRNYQANAKTISSADKMTQVLFNS 396


>gi|76809667|ref|YP_331888.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1710b]
 gi|167892419|ref|ZP_02479821.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           7894]
 gi|167909135|ref|ZP_02496226.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           112]
 gi|76579120|gb|ABA48595.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1710b]
          Length = 667

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/501 (12%), Positives = 145/501 (28%), Gaps = 50/501 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           + VT   +        L+A  +         +  A                  I+     
Sbjct: 60  STVTVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++
Sbjct: 118 LQTVANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N+ I   ++     +  LDQRD+ + K+S++ G+  + ++N +  V+ S G  L   
Sbjct: 178 AQLNEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVG 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                 ++  G +  LL  R   +  
Sbjct: 237 NASYQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI----------- 334
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVD 356

Query: 335 ---SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                T      Y      L D  + S        +      +        +     D  
Sbjct: 357 GTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSF 416

Query: 392 AGINTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
             + T   L  ++                 +          +    +S  Y    G    
Sbjct: 417 TVLPTRGALDGFSLAIANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG---- 472

Query: 446 EELSFLIKVEQSYNISNKLIM 466
                      +YN ++K + 
Sbjct: 473 -------TTTLAYNAASKTLS 486



 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S    V+     +  +   A  +   +  L  + +  +  +    +    +     
Sbjct: 343 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 402

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             +L  T     +F  + +       +    +G  +++            +   +     
Sbjct: 403 KLSLSSTPNAGDSFTVLPTRGALDGFSLAIANGSAIAAASPVLAAGVATNSGTGVISQGS 462

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                QL      L  + + K            +                +         
Sbjct: 463 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 522

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395
              + +       V      ++       D          N   ++   + + +     N
Sbjct: 523 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 582

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL       +  +    S           +   I+++  +  GVN  EE + L++ +
Sbjct: 583 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 642

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           Q Y  + K+I   + + QT+L  
Sbjct: 643 QLYQANAKVIQTANSVFQTVLGL 665


>gi|291276682|ref|YP_003516454.1| putative flagellar hook-associated protein [Helicobacter mustelae
           12198]
 gi|290963876|emb|CBG39712.1| putative flagellar hook-associated protein [Helicobacter mustelae
           12198]
          Length = 606

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/431 (12%), Positives = 121/431 (28%), Gaps = 35/431 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
            +      +                NI NA N+ Y R   ++                V 
Sbjct: 3   GIFTSLGTSYTGLQANQLMVDVTGNNISNASNEFYSRERVLSAPEKSLLIGGNLVGRGVD 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           +   +  + +         + A        +           D  +      + +  ++ 
Sbjct: 63  IQAVQRIHNDFVFDRYSKAAEAYSFAETEFNHLEEASSFF-PDVDDLGIMSDLKEYFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  SKN S     + + + A+   Q+      +V  ++  A  ++E+ +  +    + + 
Sbjct: 122 KDISKNPSYSAQKQVLAEKAKVFTQHLKDVRSKVVDLQKKASDDLEIRVKEINDIGAHIA 181

Query: 172 VVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217
            +N  IK          A+   DQRD L  K+ E++G +                 + D 
Sbjct: 182 KLNKEIKVMEDKEIYKRANTLRDQRDELEFKMRELLGGNVFKDKLASQGRLDRDSADFDE 241

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALL 276
               S G  L        +   +     ++  N +++ G           +  GKI AL+
Sbjct: 242 DYLFSIGRGLNIVDGGTFHPIVLQKDNNSAGLNRVYLQGYDFKPIEITDKLVSGKIGALI 301

Query: 277 QIRDSV--------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            + +             + N LD  AR  I + +     +            +      +
Sbjct: 302 DLYNDGHNGTKVGKFQNYINMLDTFARSFIEASNAIYAQSATHRIESAPLELEDNVAFGD 361

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                   +  +   Y ++ + +                +       +   D  +KN + 
Sbjct: 362 TNYNLKQGSFDLV-VYDADGNEVVKKSVQISDITTMRDVVNQINANTDDNGDHNSKNDVD 420

Query: 389 DPVAGINTNVT 399
           D       N +
Sbjct: 421 DFFRAYYNNKS 431



 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 77/261 (29%), Gaps = 10/261 (3%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             + G T +       +    ++         + I  +    +  + +            
Sbjct: 356 NVAFGDTNYNLKQGSFDLVVYDADGNEVVKKSVQISDITTMRDVVNQINANTDDNGDHNS 415

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            + V  F                 K     +           G+  +++      +  I 
Sbjct: 416 KNDVDDFFRAYYNNKSKRFIIEPTKSVNGFSVAIRDHGTNFPGVFGINSFFEGDSAANIE 475

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +N  Y+ + + +R            +  + G  ++ N        +  F         + 
Sbjct: 476 LNYAYQKDATTIRTW----------MAPVTGNFEIANMMQQMQYDDIEFYDNKFDIKKMK 525

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L E+       L  +   +       + +     + + +   V++ EE+  LIK +  Y+
Sbjct: 526 LSEFYEFIATKLATDTQSAQTTMNTKKALLESAKKEHLSISQVSVDEEMVNLIKFQSGYS 585

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            + K+I   DKM+ TLL   +
Sbjct: 586 ANAKVITAIDKMIDTLLSIKQ 606


>gi|115522799|ref|YP_779710.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           BisA53]
 gi|115516746|gb|ABJ04730.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           BisA53]
          Length = 589

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 149/428 (34%), Gaps = 16/428 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL    + A +       Q +    NI NAD   Y  +    T           +V   
Sbjct: 1   MSLDIARSIAVSSLMVTQVQISVTSSNISNADTTGYTVKTASQTSEVTSGVGTGTSVTGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA----DDHYNNSPTHYISKLRDSL 111
            S    +  K L    S +G      S     + +      DD    S  + I+    ++
Sbjct: 61  TSNVDKLLMKSLVQAISGLGAADSTNSMLERLQALYGSTSDDDGSGTSLANSIAAFETAI 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            S +       L    +   + +      ++  +Q +R+DAD+ I   + ++   L+ + 
Sbjct: 121 ASLAATPGSASLQANAVSALDSLASQLRETSSGIQDLRSDADQSIASAVDDVNEQLNAIA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N  IK   AS     D  DQR+  LQ+I+  I +S  + ++ DM +YTS G  L ++ 
Sbjct: 181 SLNAQIKQAAASNQPTGDLEDQRNTALQEIASRINVSYFISSSGDMQIYTSSGQALLDSS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVV----VSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             ++++   ++   ++  +     G        ++  S +  G + AL+ +RD+ +P  Q
Sbjct: 241 VHELSYTTASTVAASTTYSTTPPSGFSGILVNGTDITSQISSGSVGALITLRDTTLPAAQ 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENV---PGLFIADGIKDLDNKLCQGISETICVNPQY 344
            QLD++A  L  S +    +  +        G         L       ++ T       
Sbjct: 301 AQLDQLATTLADSLNAVSNLGTSLPPPQTLTGTTAVTSSTALSATGSVRVAVTDQSGALA 360

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 L    +V                + +        +   + V+  N   ++    
Sbjct: 361 SYADLDLASYTTVGALVTAINGISGLSASIDSSGHVVIAASSSSNGVSIGNMTASVGSDG 420

Query: 405 RNSIGWLE 412
            +   WL 
Sbjct: 421 ASLSDWLG 428



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 93/297 (31%), Gaps = 5/297 (1%)

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                   Q D L   +++ +   + +  +       +  T +  +           + T
Sbjct: 294 TTLPAAQAQLDQLATTLADSLNAVSNLGTSLPPPQTLTGTTAVTSSTALSATGSVRVAVT 353

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
             S +   + D  + S     A+                          +   +   +  
Sbjct: 354 DQSGALASYADLDLASYTTVGALVTAINGISGLSASIDSSGHVVIAASSSSNGVSIGNMT 413

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             +  +  ++      + +          +S  I  +P      S      S +      
Sbjct: 414 ASVGSDGASLSDWLGLNDLVTATGASDFKLSAAILADPSKLQTSSL----DSAATLTTGG 469

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKNRSDSHDLHM 423
               +G   +++    +   +  F  V G+ +   +L +YA   I  +    S + D + 
Sbjct: 470 TVLSSGSATIVDKLSSALTGSSSFAAVGGLGSTTGSLADYASALIAKVAAQASAAGDAYT 529

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             Q   + ++ + ++  GVNL EE + L  ++  Y  +++LI   + M   L+  V+
Sbjct: 530 AKQTTRSTLASAMASQSGVNLDEETAKLSTLQNQYAAASQLIQAVNAMFDALISAVQ 586


>gi|149201615|ref|ZP_01878589.1| FlgK flagellar hook-associated protein 1 [Roseovarius sp. TM1035]
 gi|149144663|gb|EDM32692.1| FlgK flagellar hook-associated protein 1 [Roseovarius sp. TM1035]
          Length = 1335

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 100/395 (25%), Gaps = 10/395 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSENK 60
           ++ + +  +               NI N D   Y RRD +         V VV  R    
Sbjct: 1   MVDLMDIGRGGVLAYRTALGVTGENIANVDTAGYRRRDAVMQEVGVGGGVDVVDIRRAFD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +         S +G      S     E               +    D+L+  S+   +
Sbjct: 61  GLVAARSRDAQSTLGAAETHLSHVQALEDRLL--PGEGGLPDLLDGFFDALDGLSQVPED 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L + V+     +       A  +  +  +  +E    +      LS L  V + +   
Sbjct: 119 QGLRQAVLSAGTALAGGVADLAEGIDVLTRNVREETAQTVERANTVLSGLAEVQEQLAQV 178

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T  +   +  LDQRD LL  ++E++ I   + +     V         +     +     
Sbjct: 179 T-DERARNPLLDQRDRLLVNLAELVAIDVEMDDAGRATVRLG-----ADGSGPMVLERGR 232

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                   +    +      + +     +G +   L      +    + LD  A  +   
Sbjct: 233 AGRIEVGTAGRYTVTSADTKAVEVQTTLRGGMLGGLANAAGAMAQAASDLDLWASRMAEE 292

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +             G  +                          +          V   
Sbjct: 293 INAVHAQGLTPTGGRGGALFSVSGWEATPGALMRGTGAASVTITDATVMPAGPLTLVQDA 352

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                +       ++     + +   +   ++G+ 
Sbjct: 353 PSGLWQARDAAGQVLATGEQTLSLPGLRIEMSGVP 387


>gi|149188066|ref|ZP_01866361.1| flagellar hook protein E [Vibrio shilonii AK1]
 gi|148838054|gb|EDL54996.1| flagellar hook protein E [Vibrio shilonii AK1]
          Length = 432

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/481 (8%), Positives = 111/481 (23%), Gaps = 62/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N                  
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGAQPSK 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +    + ++ +  +     F A+ +                     + +SY   
Sbjct: 63  IAQQFHEGSSISTNNPMDLRISGTGFFAVSKDRLVPQQNE---LTRNGAFHLNKDSYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    ++     V ++               +   + I        +   +   +
Sbjct: 120 SNDEFLLGYEVNKDTNEVVSY---------------EPRPINIPPEFGKPKQTANIEIGV 164

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                         D  D      S    I   +  +  M  Y     T   T       
Sbjct: 165 NLPANGDLKDPALFDFTDPETYNRSTSSTIYDSMGQSYKMTTYYVKDQTQQNTWQSYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +            +       G + +L   +  V               
Sbjct: 225 TDGQGEKPVNIAGGDATTPTGHVGHTMRFNNDGTLASLNNGQPIVTTDL----------- 273

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                       +              D                 Q+ +     +     
Sbjct: 274 -------GANGIDMNGADPAQTLSFSLDSA--------------TQFAAPFELTKFQEDG 312

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +     +++  Y +  N       +  +     L +  +    W     S 
Sbjct: 313 ATTGFLTKVDFDEQGNVLGTYSNGENVTLGRVAMVRVANEQGLDK--KGGTQWDSTTASG 370

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 371 AKIWGESNKGSFGTINNGTLEQSNIDMTQELVDLISAQRNFQANSRALDVHNQLQQNILQ 430

Query: 478 G 478
            
Sbjct: 431 I 431


>gi|78219159|gb|ABB38508.1| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 527

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/534 (9%), Positives = 108/534 (20%), Gaps = 81/534 (15%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVTQRSENKNMFDKVLHA 69
              +  NI N +   +                    + +    V   +   +        
Sbjct: 1   MNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQVGRGVGIGTIYGDFSQGSFET 60

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            + A       + F A+     +      +        R   E Y  +    +L    I+
Sbjct: 61  TTEATDLAIGGRGFFAV-----SPKGEETAYYTRAGNFRFDKEGYLVDPHGYVLQGWQIE 115

Query: 130 -----------------------------NAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                                                   ++        D     +   
Sbjct: 116 TPRPSLATSTAGSVSSTSKIKGAGVPKDIQLPGFTAEPKHTSNVTIISNLDDASGGDNST 175

Query: 161 SNLRRF--------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVL--------- 197
           +                   LSE +               AH+     D +         
Sbjct: 176 NAANPMFALFNSWDGTAEPPLSENSFAYQTTIKVYDEGGTAHNLTIYYDQVASDTISGEG 235

Query: 198 --LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
              +    I+ +       +   +           +   + F+        S   P    
Sbjct: 236 SGQKHWEYIVTMDPADEQRSINGIDFKGTPAAGMLMAGTLTFDSSGQLIDQSAFTPGSSA 295

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDS---------VVPIFQNQLDEMARVLIGSFSEKDP 306
              +                     +         V P            L       DP
Sbjct: 296 TGSMKDLSNWNPTTFSTNGYPMFVANFSGISNASYVTPNPDPAAQPYIMELNLGLKNSDP 355

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
               S  V    +          L             +  + S                 
Sbjct: 356 STWASAGVSNASLVGTNVANLPSLGNQAERQSSATTSFSGSSSTPTRYQDGYTFGFLQNV 415

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     L   Y +    +     +    +   L     N     E N S        + 
Sbjct: 416 TVTRDGILQGRYSNGAVLDLYQITLYDFQSKDNLRREGGNLFS--ESNASGLAAPGPANA 473

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  ++ +      V+L +E   +I  ++ +  ++K+I  TD ML+ +++  +
Sbjct: 474 NGYGTVNSNSLEQSNVDLAKEFVNMITTQRGFQSNSKVITTTDTMLEVVIQMKR 527


>gi|307721502|ref|YP_003892642.1| flagellar hook-associated protein FlgK [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979595|gb|ADN09630.1| flagellar hook-associated protein FlgK [Sulfurimonas autotrophica
           DSM 16294]
          Length = 626

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/412 (10%), Positives = 122/412 (29%), Gaps = 16/412 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
           S+    +   +  + A     +   NI NA+N+ Y R+  +T+               V 
Sbjct: 3   SIFNTLSIGYSGLSTAQVGINTTGHNIANAENEGYTRQRVVTSAANPLITSAGDVGNGVE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   +    N      ++ SS        +            +         +++  +  
Sbjct: 63  VQDIKRVFDNFVFDRYNSISSDKEYSDFERQTLEELSTYF-PEVDGVGIKADLAEYYNMW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++++ N   D +   +    E + ++   +  +V  ++   + ++   I+ +     +L 
Sbjct: 122 QTFADNPDNDSIKVALAKQTETLTEHITQTQNQVLNLQMQVNDQLSANITEVNSLAQQLA 181

Query: 172 VVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N +I    +     A+D  D+R+++ + +S +IG           +   S+  T    
Sbjct: 182 DLNISIDTAESGGGYSANDLRDKRNIIEKSLSRLIGAEVNQGQLESNIQIDSNSNT---R 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                      +    +  +P+ I+             + +   L+ + + +       +
Sbjct: 239 TGSYTLSVNGFNLVDGNTFHPLHIEKGTNPYGFYELSYERQDGTLIPLEEKINGGKIGAI 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +    I + S           V           +++                  N + 
Sbjct: 299 FNLRGGAIDTTSGMPTDGVLQNVVADFDAFAKGL-IESTNNLYAKSARSKMESNNINLNP 357

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                S S        ++  Y    N              ++G++ + ++  
Sbjct: 358 ASSLVSSSLNINPGSFDMIVYDIDGNEVAKRTIDINAATSMSGVSGSNSIQG 409



 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/445 (9%), Positives = 119/445 (26%), Gaps = 8/445 (1%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
              T  S    +    R +   +   +     + + Q +L  + +      +    Y  S
Sbjct: 186 SIDTAESGGGYSANDLRDKRNIIEKSLSRLIGAEVNQGQLESNIQIDSNSNTRTGSYTLS 245

Query: 100 PTH----YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +           N            +   +      +  ++  I       
Sbjct: 246 VNGFNLVDGNTFHPLHIEKGTNPYGFYELSYERQDGTLIPLEEKINGGKIGAIFNLRGGA 305

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           I+         + +  V +    F        ++   +      + + I         ++
Sbjct: 306 IDTTSGMPTDGVLQNVVADFD-AFAKGLIESTNNLYAKSARSKMESNNINLNPASSLVSS 364

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
            + +       +   +  +   ++       +  + +     +      +        A 
Sbjct: 365 SLNINPGSFDMIVYDIDGNEVAKRTIDINAATSMSGVSGSNSIQGQIIANKDDNSDANAN 424

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
             I D +   +        ++ +   +  +        V  L         +     G+ 
Sbjct: 425 NDIDDYINFNYTPSATGDTKLELSMDTLAESQGYTFAIVDNLLDGKFASGTNFAGAIGLG 484

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                      +        +          + AG   +         +++ F  V+   
Sbjct: 485 SFFEGTNAR--DIKLNSQYSNNPTGLHAGYSSNAGDNRVALDMVQQQFESYKF-KVSNEE 541

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            + T       +  ++  + + +   +      FN     Y++   V++ EE++ LIK +
Sbjct: 542 YDATTYGMFDITSTFVGISTNSAITRNETVSTQFNATEMEYNSITKVSIDEEMTNLIKYQ 601

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
            SY  + K+I   D+M+QTLL   +
Sbjct: 602 TSYGAAAKVITTVDQMMQTLLGIKQ 626


>gi|315180485|gb|ADT87399.1| flagellar hook protein E [Vibrio furnissii NCTC 11218]
          Length = 397

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/474 (10%), Positives = 110/474 (23%), Gaps = 78/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N ++Q+  +I  NI N     +    T              +        +
Sbjct: 2   SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVYNGQQAGGVQVMG---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              A  S     R L             D                 +    + +   L  
Sbjct: 59  NFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTGGSLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D                                        +  +   +    A   
Sbjct: 119 YTVDGNN-------------------------------NLLAGSMGPLKVDMSSLEAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +  DF    D  +  I            ++    YT   T ++++   +    +    T 
Sbjct: 148 NKVDFAANLDDRVDAIDTTENPFDPKNVDSYNNSYT---TPVYDSKGNEHTLTQYFVKTG 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +      I     S+   +         L       +                      
Sbjct: 205 DNTWEIHSIVDGDTSTLTTTPATFDSKGNLTSATAYTI---------------------- 242

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I+  +    QY S+    ++  +      +  
Sbjct: 243 -----------------SASAAGADTLNITVDMTNLSQYGSDFVVSKNNPNGYTSGSFTD 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  +       +A  N    L++   ++  W +   S      +  
Sbjct: 286 IRVEANGMVYATYSNGQSLLQGQLVLANFNAPQELMQ--TSNTAWTQTYGSGQPVYGIPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              F  ++        V+L  EL  L+  +++Y  + K I   D+++ +L   V
Sbjct: 344 SGQFGELASGVLEGSNVDLTSELVHLMSAQRNYQANTKTITTADQLMMSLFNAV 397


>gi|308050024|ref|YP_003913590.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799]
 gi|307632214|gb|ADN76516.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799]
          Length = 407

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/474 (10%), Positives = 105/474 (22%), Gaps = 68/474 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +   + SQ   +I  NI N     +    T                 N      
Sbjct: 2   SFNIALSGLRSTSQDLNTISNNIANVSTPGFRGSRTEFASVYAGGQGGGVAVAN----VS 57

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                   +                   ++   +            + Y  +     L  
Sbjct: 58  QNFNTGGDVLYTGRELDMAISGSGFFMTNNQGTTTYTRSGMFAQDKDGYVVDSHGGKLQG 117

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +    +++                 D +++          S   V+N           
Sbjct: 118 YQVGPNGQLLTGAV------------TDLQVQTGSLPANATTSMGLVLN----------- 154

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                LD R+  +   +     ++     N   +Y S G     T               
Sbjct: 155 -----LDSRNDAVDPANFDPADASTYHALNSTKIYDSLGNEHNLTQYYMKTGPNQWEVRY 209

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             +   +       S    S              +  +   Q+    +   L+ +     
Sbjct: 210 ELDGTDVTAYASDTSITFDS--------------NGALVGGQDLTLNIPDNLVDADGNPI 255

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       IS +     Q+ S+ +              + 
Sbjct: 256 LDG--------------------SSALDISLSFNGATQFGSDFAVASMRQDGYSSGELSG 295

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     L   Y +  ++      +A       L +       W     S         
Sbjct: 296 IRIDDNGMLYGVYTNGQDQLQGQVILANFANPNGLQQVGN--TAWTATFASGQPVTGAAG 353

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++        V+L  EL  L+  +++Y  + K+I   DK+ Q L   +
Sbjct: 354 TGTMGSLTAGAIEGSNVDLTGELVNLMTAQRNYQSNAKVISTQDKLTQALFSAI 407


>gi|331657138|ref|ZP_08358100.1| flagellar hook protein FlgE [Escherichia coli TA206]
 gi|331055386|gb|EGI27395.1| flagellar hook protein FlgE [Escherichia coli TA206]
          Length = 401

 Score =  112 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNHWDVYTLDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++SN  + +  G I                              
Sbjct: 220 GTANPATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|221215578|ref|ZP_03588541.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           CGD1]
 gi|221164566|gb|EED97049.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           CGD1]
          Length = 698

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/394 (12%), Positives = 123/394 (31%), Gaps = 19/394 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 40  MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 98

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L+   +  G      S  A               +  I+     
Sbjct: 99  NTVTVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTG 156

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++  + +T I NA+ +      + ++   +R   + ++   +S +  + +++
Sbjct: 157 LQNVANNAADPTVRQTAISNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 216

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  +DQRD+ +  +S + G+  +  ++    V+ + G  L   
Sbjct: 217 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDGY-SVFLAGGQPLVVA 275

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                +++  G +  LL  R   +  
Sbjct: 276 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDP 335

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q +L  +A       + ++ +  +     G  +            +   +         
Sbjct: 336 AQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSFSN 395

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           ++     D         + + + A    +     
Sbjct: 396 ASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNT 429



 Score = 87.8 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 94/363 (25%), Gaps = 4/363 (1%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    K     A    Q    +A  +            +    +            ++ F
Sbjct: 334 DPAQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSF 393

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFE 238
             AS+    D+    D     +++    S +   N     +   D +    T+     F 
Sbjct: 394 SNASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSSGTMQAGDQFT 453

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            + +            +G  +++     ++            +  V   +Q     +   
Sbjct: 454 VLPTRGALDGFQLATSNGSAIAAASPVVTSAASTNAGTATITQGPVSAGYQVPATTLTYD 513

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGG 355
                    P                I      +    +    +     +  +       
Sbjct: 514 AATKSLSGFPAGTTVTIAGTPPQTVTIASSTTPVPYDPAAGATLTMSGTAPGALNGVTVS 573

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +   +  Y    N   ++   + +    +  N  VTL     + +  +    
Sbjct: 574 LSGAPADGDTFQIGPYAGGTNDGTNALALSKLVTAKSFGNGTVTLTGAYASYVNDIGNAA 633

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S           +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+
Sbjct: 634 SQLKSSSAAQTALVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 693

Query: 476 LEG 478
           L  
Sbjct: 694 LGL 696


>gi|331682578|ref|ZP_08383197.1| flagellar hook protein FlgE [Escherichia coli H299]
 gi|331080209|gb|EGI51388.1| flagellar hook protein FlgE [Escherichia coli H299]
          Length = 401

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++S+  + +  G I                              
Sbjct: 220 GTAEPAMTLVFNANGVLTSDPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                     +        +    Q     + +    +  K   
Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|94968673|ref|YP_590721.1| flagellar basal body FlaE [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550723|gb|ABF40647.1| flagellar basal body FlaE [Candidatus Koribacter versatilis
           Ellin345]
          Length = 409

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/474 (8%), Positives = 110/474 (23%), Gaps = 68/474 (14%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           F+   +    +S   A+I  N+ N +   Y +   +                    + ++
Sbjct: 4   FSIPLSGLTASSTALATIANNLANQNTIGYKQTRALF---------------RDLFYQQI 48

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
               S    Q         +    +            ++ + D      +N ++      
Sbjct: 49  GQTGSGDPIQVGAGTMIGTIDTNFTDGSVSPTGVPTDVAIMGDGFFVAQQNGNDIYTRAG 108

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                 +        A  +              +       S L  +N      ++    
Sbjct: 109 NFKVGADGTLRTQDGAVVLG----------YQAVDGKVTTGSGLGALNLGQGQVSSPSAT 158

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                         +     ++   +  +          +L         F K  + T  
Sbjct: 159 T------------SLQLTTNLNASAKVGDSYNTSLKVYDSLGGVHVVTFTFTKTGTNTWD 206

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            +++    +G V   +    +       L     ++        D  + +   ++   D 
Sbjct: 207 YDASLPTGEGTVSLPSGSHTLTFDSDGKLTTPSSNINFDLTGLSDGASDMKGVTWKLYDA 266

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
             G                                 Q  ++ +            +    
Sbjct: 267 TGG-----------------------------SSMTQMAADSATPATAQDGYGSGMLQNF 297

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           N+     +   + +          +A       L +  +N   ++    S    L     
Sbjct: 298 NIGADGTIEGTFSNGKTSIIGQIAIASFPNVQGLRKVGQN--AYVGTLASGQAALGAPGS 355

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                +         V++  E S LI  ++ Y  + K+I   D++ Q  +   +
Sbjct: 356 GGRGTLGGGALELSNVDMATEFSNLIVAQRGYQANAKVITTFDEITQDTINLKR 409


>gi|222084885|ref|YP_002543414.1| flagellar hook protein [Agrobacterium radiobacter K84]
 gi|221722333|gb|ACM25489.1| flagellar hook protein [Agrobacterium radiobacter K84]
          Length = 425

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/481 (9%), Positives = 113/481 (23%), Gaps = 57/481 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + A++  NI N+    Y +  T  +      +     S   
Sbjct: 1   MSIFGSMKTAISGMNAQANRLATVSDNIANSSTTGYKQASTSFSSLVLPSSSGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYSKNLS 119
               +   +    +                         +                 N +
Sbjct: 61  ETTVRYAISQQGTVSATTSSTDLAIQGNGFFVVQSAAGQTFLTRSGDFSADASGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L      +    V     S      +           + ++   L+    +      
Sbjct: 121 GFTLMGYSSASGAPSVVVNGFSGMVPINVTPSGTSVAATTVGSMTGNLNSNATIAT---- 176

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                 S   G              +    T +++    + F+ 
Sbjct: 177 ----------------------SSSTGYLPSENTYPVTTDTSKSSITGYDSQGNAVTFDI 214

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T  +  +    +   + ++  S  P                           +   
Sbjct: 215 YYTKTADNTWDVQVYNQADLVASPTSGGP---------------------------LYSS 247

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +      +  + +          +        Q I+  +    Q  ++ S        + 
Sbjct: 248 AAVGSTEMTFDDDGALVSGGTFDLSFTSGSTTQSIAMDMTGFTQVATDFSATGKMDGQAP 307

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                   +A    +   Y DS  K     P+A + +  +L   + N         S   
Sbjct: 308 NP-VTSVTIAKDGTVSAVYKDSSTKELYRIPLATVASPDSLTLESGNVYS--ANGDSGVT 364

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                      +I         V+L  EL+ +I  ++SY  ++K+      +L  L+   
Sbjct: 365 VTGWPQSGGLGYIQSGALEESNVDLATELTNMITAQKSYTANSKVFQAGSDLLDVLVNLQ 424

Query: 480 K 480
           +
Sbjct: 425 R 425


>gi|308186399|ref|YP_003930530.1| Flagellar hook-associated protein 1 (HAP1) [Pantoea vagans C9-1]
 gi|308056909|gb|ADO09081.1| Flagellar hook-associated protein 1 (HAP1) [Pantoea vagans C9-1]
          Length = 550

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/551 (10%), Positives = 146/551 (26%), Gaps = 77/551 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  + A    ++   NI N     Y R+ T+   +             V +
Sbjct: 1   MSSIINSAMSGLSAAQAALSTTSNNISNYTVAGYSRQTTVLAQANSTLQGNSYYGNGVNI 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L   S+      +      +  +         S +  +     +L+
Sbjct: 61  TGVQREYDAFIATQLRGSSAN--YSAVSTQHSQISNIDDLLSTSTTSLSTSLQGFFTNLQ 118

Query: 113 SYSKNLSEDILGKTV-------IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   N ++    +++       +   +   Q  N     V      + K++    S +  
Sbjct: 119 NVVSNANDPSARQSMLSNAQGLVSQFQTSAQYLNNMQNSVNADIGSSIKQVNTITSQIAD 178

Query: 166 F------------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
                         +   +++   +      +     + Q+D     ++   G++ +  +
Sbjct: 179 LNQQIGKLSTANGAAPNDLLDKRDQLVNTLNNVVGVTVSQQDGGGYTVAMANGLTLVNGD 238

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
            +  +V  +  +    T    ++ +  N            + G++    Q   + + ++ 
Sbjct: 239 KSHDLVAMNSSSDPTRTTIGYVDKQAGNVEIPEKLITTGSLGGLLAFRTQDLDLAQNQLG 298

Query: 274 ALLQIRDSVVPIFQNQ--------------------LDEMARVLIGSFSEKDPIAGNSEN 313
            L     +       Q                    +         S + +       + 
Sbjct: 299 QLAAAFTTSFNDVHKQGFDSNGDQGVDFFNIGSPLVVSNSKNSTAASVTAEWTDTSALKA 358

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-------------------- 353
                  DG      +     +  I  +     N +   D                    
Sbjct: 359 TNYNVSFDGTNWTATRASDSTAAAITQSTDASGNTTLSFDGLKLTVGATPAPAAKDSFLV 418

Query: 354 ------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                    +S       +  A           +  K         +  N TL +     
Sbjct: 419 KPVQNVVNDMSVAITNESQVAAAGAVGGESDNRNAQKLLALQDAKLVGGNATLSQAYATI 478

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +    S         + V + ++E   +  GVNL EE + L K +Q Y  + +++  
Sbjct: 479 VSSVGNKTSSLETTSDTQKSVVSQLTERQQSVSGVNLDEEYANLTKYQQYYMANAQVLQT 538

Query: 468 TDKMLQTLLEG 478
              +   L+  
Sbjct: 539 ASTVFNALINI 549


>gi|193069470|ref|ZP_03050424.1| flagellar hook protein FlgE [Escherichia coli E110019]
 gi|192957218|gb|EDV87667.1| flagellar hook protein FlgE [Escherichia coli E110019]
 gi|323174795|gb|EFZ60410.1| flagellar hook protein flgE [Escherichia coli LT-68]
          Length = 401

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKTGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|170694400|ref|ZP_02885554.1| flagellar hook-associated protein FlgK [Burkholderia graminis
           C4D1M]
 gi|170140823|gb|EDT08997.1| flagellar hook-associated protein FlgK [Burkholderia graminis
           C4D1M]
          Length = 657

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/440 (13%), Positives = 131/440 (29%), Gaps = 23/440 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N   +  N A     +  +NI NA    Y     +   +             V+ 
Sbjct: 1   MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVFAETGGQYTGSGFLPQGVST 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT   +        L+   S+        S  +    +             I+     ++
Sbjct: 61  VTVTRQYSQYLTTQLNNAQSSSSSLATYNSLISQLNNLVGSPTA--GLASAITGYFTGMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S N S     +T +  A+ +    N + ++   +R   + ++   +S +  +  ++  
Sbjct: 119 NVSNNASSLATRQTAMSGAQTLANQINAAGQQYDALRESVNTQLSNTVSQINSYTQQIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  LDQRD+ +  +S++IG+  +  +N    V+ S+G  L     
Sbjct: 179 LNGQISAASTQGQPPNQLLDQRDLAVSNLSQLIGVQVV-NSNGSYGVFMSNGQPLVSGGN 237

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   ++   +                       S +  G +  LL  R   +   +
Sbjct: 238 SFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQILPDSKIDGGTLGGLLAFRSQTLDPAE 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-----TICVNP 342
            QL  +A       + ++ +      V G  +            Q         +     
Sbjct: 298 AQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVGGPTVYANTQNTGNASLNVSFANPA 357

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q  +    L   G+       +   + G    ++   +  N +       G +  V    
Sbjct: 358 QPTTGDYTLAYNGTGYTLTDNSTGTVVGSAANLSQPINGLNFSTTGTMNPGDSFTVEPTR 417

Query: 403 YARNSIGWLEKNRSDSHDLH 422
            A NS   +  + S      
Sbjct: 418 GALNSFATVTTDGSAIAAAS 437



 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/442 (8%), Positives = 101/442 (22%), Gaps = 3/442 (0%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             + +     V +   +          L    S      L   +        A       
Sbjct: 214 QVVNSNGSYGVFMSNGQPLVSGGNSFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQILP 273

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            +         L ++     +    +          Q    +A  +            + 
Sbjct: 274 DSKIDGGTLGGLLAFRSQTLDPAEAQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVG 333

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +          +  + F   ++    D+    +     +++    + +    N    
Sbjct: 334 GPTVYANTQNTGNASLNVSFANPAQPTTGDYTLAYNGTGYTLTDNSTGTVVGSAANLSQP 393

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ---GSAVPKGKIKALL 276
                 +   T+    +F    +    +    +  DG  +++     GSA         +
Sbjct: 394 INGLNFSTTGTMNPGDSFTVEPTRGALNSFATVTTDGSAIAAASPVLGSAASTNTGTGAI 453

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                                    +     +  +                       + 
Sbjct: 454 SQGTVTAGYTMPSSTTTLTYNGTGLTGFPVGSTVTVAGSPATTYPITSATTVVPYSSATG 513

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                    +                 +   +       N   ++   + +    +    
Sbjct: 514 ASLTINNTTAGQMDKVSVTISGVPSAGDKFTIGPNSGANNDGRNALALSNLSTAKSMNGG 573

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
            VTL     N +  +    +           +   I+ +  +  GVN+ EE + L++ +Q
Sbjct: 574 TVTLTGAYANYVNDIGNQTNQIQTSSTAQASLVTQITTAQQSVSGVNINEEAANLLQYQQ 633

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
            Y  ++K+I     + QTLL  
Sbjct: 634 LYQANSKVIQTAQTLFQTLLGI 655


>gi|153951334|ref|YP_001397315.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938780|gb|ABS43521.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 545

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/545 (10%), Positives = 136/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D        N       +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYNTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S I            K      +   N+        +     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPIASDGEFDVALQGKGFFGVLEADGNAYYTRNGSFKRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    TV   A
Sbjct: 121 DSYGNFVLGTMNPVFTGMNYSDRVAGLMGDYLNTGTPVNNGFTVNSNNPFSIGTTVSQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI----------STIVRNNNDMVVYTSDGT- 225
           IK             + +       + I  +          +     +   VV  S G  
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTITEVVKVDLDPSKFNVTKTEDGKYVVSGSVGKE 240

Query: 226 -------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQESDNIQYKAIAQIYDSNRNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L     N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSTELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|78067830|ref|YP_370599.1| flagellar hook-associated protein FlgK [Burkholderia sp. 383]
 gi|77968575|gb|ABB09955.1| conserved hypothetical protein [Burkholderia sp. 383]
          Length = 660

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 123/392 (31%), Gaps = 19/392 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS   + N   +  N A     +   NI NA    Y  +  +              P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGNNISNAATPGYSVQRPVYAEASSQYSGSGYMPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L+   +  G      +  A               +  I+     
Sbjct: 60  NTVTVQRQYSQYLSDQLNTAQTQGGALSTWYTLVAQLNNYIGSPTA--GISTGITSYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+  + +T I NA+ +    N + ++   +R   + ++   +S +  + +++
Sbjct: 118 LQNVANNASDPSVRQTAISNAQTLANQLNAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  LDQRD+ +  +S + GI  + RN++   V+ S G  L   
Sbjct: 178 AQLNQQIAAASSQGQPPNQLLDQRDLAVSNLSGLTGIQVV-RNDSGYSVFMSGGQPLVVA 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                S++  G +  LL  R   +  
Sbjct: 237 DKSYQLAAVTSPSDPSELTVVSQGIAGAKPQGPNQPLPDSSLSGGTLGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +     G  +                          
Sbjct: 297 AQAQLGAIATSFAAQVNAQNALGIDLSGNKGGNLFTTPSPTVYANQGNTGNASLSVSFAN 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
           ++     D         + + + A    +   
Sbjct: 357 ASQPTTSDYTLSFDGANYTLTDRASGAVVDQK 388



 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/444 (9%), Positives = 106/444 (23%), Gaps = 5/444 (1%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             +   S  +V +   +          L A +S      L    + +        +    
Sbjct: 215 QVVRNDSGYSVFMSGGQPLVVADKSYQLAAVTSPSDPSELTVVSQGIAGAKPQGPNQPLP 274

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            +         L ++     +    +          Q    +A  +              
Sbjct: 275 DSSLSGGTLGGLLAFRSQTLDPAQAQLGAIATSFAAQVNAQNALGIDLSGNKGGNLFTTP 334

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +          + ++ F  AS+    D+    D     +++    + + +    M V
Sbjct: 335 SPTVYANQGNTGNASLSVSFANASQPTTSDYTLSFDGANYTLTDRASGAVVDQKAGPMPV 394

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                     +       +     T  + +         ++    S              
Sbjct: 395 SLGGLNFSIPSGSMSAGDKFTVLPTRGALNGFGLATTSALAIAAASPAVTSAASTNTGTG 454

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
              +    +        L    + K            +          N     +     
Sbjct: 455 KITLGGVTSGYQVPTTKLTYDATAKTLTGFPVGTTVTIGTTPPTSVTINNPTDTVPYDPA 514

Query: 340 VNPQYRSNPSFLRDGGSV-----SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                  + +       V           +   +  Y    +   ++   + + +  A  
Sbjct: 515 AGATMTMSGTAAGALNGVSVTLSGAPATGDSFTIGPYAGGTSDGSNALALSKLVNAKAFG 574

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           N   TL     + +  +    +           +   I+E+  +  GV+  EE + L++ 
Sbjct: 575 NGTTTLTGAYASYVNGIGNTTTQLKSSSAAQTGLIGQITEAQQSVSGVSTNEEAANLMQY 634

Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478
           +Q Y  + K+I     + QT+L  
Sbjct: 635 QQFYQANAKVIQTAATLFQTVLGL 658


>gi|259908806|ref|YP_002649162.1| flagellar hook-associated protein FlgK [Erwinia pyrifoliae Ep1/96]
 gi|224964428|emb|CAX55937.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae
           Ep1/96]
          Length = 551

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/550 (13%), Positives = 156/550 (28%), Gaps = 73/550 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  + +S    +   NI N     Y R+ T+   S               V
Sbjct: 1   MSNLINTAMSGLSASSAALNTTSNNITNYAVTGYSRQTTVLNQSASTLSGGNYYGNGAAV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQ----------------------QRLLQSFEALKEMM 90
            +   E     +K L A S+                             +Q      + +
Sbjct: 61  SSVYREYDQFINKQLLAASTQSSALSTQAGQMSNIDDMMSGTTNTLSTTIQDLFKSLQTL 120

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLS-----EDILGKTVIDNAEEVVQNFNTSAREV 145
           +++   ++S    + K    +  +    +     +  L  +V    E+V       A   
Sbjct: 121 ASNASDSSSRQAVLGKAEGLVNQFKATDTYLTNVDSGLNTSVKSTVEQVNNYAKQIANVN 180

Query: 146 QKIR----------------------ADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
           Q+I                       +  +K + + +S        +++ N     +   
Sbjct: 181 QQIAKLKGAGAGSEPNDLLDKRDLLVSQLNKLVGVNVSQQDGGSYSISIGNGISLVQGDR 240

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNS 242
                      D     I+ +  ++       +    +   G  L      +    ++  
Sbjct: 241 FEQLAAVPSSADPARTTIANVDSVTGAKTEIAESQFTSGSLGGLLAFRHDLEGVRNQIGQ 300

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIG 299
             +   S+        V S+        K+    A+    +          D      + 
Sbjct: 301 LALALGSSFNTQHQAGVDSDGDKGEAFFKLGNPSAMSNSLNKGNASLSVAYDASKTGDVK 360

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI------CVNPQYRSNPSFLRD 353
           + + K  +   S NV  L     +KD+D      +                 ++   ++ 
Sbjct: 361 ASNYKMTLENGSWNVVRLSDNSKVKDVDTSTDGTLKFDGLTVTVGATGTAQNNDSYIIKP 420

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF----IFDPVAGINTNVTLLEYARNSIG 409
             SV      N+ + A          +S N+N            IN   TL +   + + 
Sbjct: 421 VSSVISGMSVNITDAAKLAASSPTGGESNNENVKSLLGLQTQDLINGKSTLTQAYASLVA 480

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    S     +     V   ++    +  GVNL EE S L + +Q Y  + +++    
Sbjct: 481 DVGNKTSSLEATNTTQSAVVKQLTSQQQSVSGVNLDEEYSNLARYQQYYMANAQVLQTAS 540

Query: 470 KMLQTLLEGV 479
            + Q+LL  V
Sbjct: 541 TLFQSLLTAV 550


>gi|91225873|ref|ZP_01260842.1| flagellar hook protein E [Vibrio alginolyticus 12G01]
 gi|269965424|ref|ZP_06179543.1| flagellar hook protein [Vibrio alginolyticus 40B]
 gi|91189523|gb|EAS75799.1| flagellar hook protein E [Vibrio alginolyticus 12G01]
 gi|269829903|gb|EEZ84133.1| flagellar hook protein [Vibrio alginolyticus 40B]
          Length = 437

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/481 (8%), Positives = 112/481 (23%), Gaps = 57/481 (11%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N                  
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + E+Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKERLTPQQNE---LTRNGAFHLNKENYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    +D +   V ++       +    +   E           +      N  +
Sbjct: 120 ANDEFLLGYQVDPSSGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K  T          D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +            +       G + +L                +    +
Sbjct: 225 TDKEGEKPLNVAAGDAQTPTGHVGHTMKFNNDGTLASLNN-------------GQPITSV 271

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  +    +          +                     Q+ +     +     
Sbjct: 272 ALGDPATNTTPVDMNGADPAQTLNFGLGSA--------------TQFAAPFELTKFDEDG 317

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 318 ATTGFLTKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435

Query: 478 G 478
            
Sbjct: 436 I 436


>gi|221199746|ref|ZP_03572789.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           CGD2M]
 gi|221208649|ref|ZP_03581649.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           CGD2]
 gi|221171460|gb|EEE03907.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           CGD2]
 gi|221179985|gb|EEE12389.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           CGD2M]
          Length = 698

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/394 (12%), Positives = 123/394 (31%), Gaps = 19/394 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENV 50
           MS   + N   +  N A     +  +NI NA    Y     +   +          P+ V
Sbjct: 40  MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGV 98

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L+   +  G      S  A               +  I+     
Sbjct: 99  NTVTVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTG 156

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N ++  + +T + NA+ +      + ++   +R   + ++   +S +  + +++
Sbjct: 157 LQNVANNAADPTVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSAVSQINTYTAQI 216

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  +DQRD+ +  +S + G+  +  ++    V+ + G  L   
Sbjct: 217 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDGY-SVFLAGGQPLVVA 275

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+                +++  G +  LL  R   +  
Sbjct: 276 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDP 335

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q +L  +A       + ++ +  +     G  +            +   +         
Sbjct: 336 AQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYADTRNQGDATLSVSFSN 395

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           ++     D         + + + A    +     
Sbjct: 396 ASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNT 429



 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 94/363 (25%), Gaps = 4/363 (1%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    K     A    Q    +A  +            +    +            ++ F
Sbjct: 334 DPAQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYADTRNQGDATLSVSF 393

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFE 238
             AS+    D+    D     +++    S +   N     +   D +    T+     F 
Sbjct: 394 SNASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSSGTMQAGDQFT 453

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            + +            +G  +++     ++            +  V   +Q     +   
Sbjct: 454 VLPTRGALDGFKLATSNGSAIAAASPVVTSAASTNAGTATITQGPVGAGYQVPATTLTYD 513

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGG 355
                    P                I      +    +    +     +  +       
Sbjct: 514 AATKSLSGFPAGTTVTIAGTPPQTVTIASSTTPVPYDPAAGATLTMSGTAPGALNGVTVS 573

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +   +  Y    N   ++   + +    +  N  VTL     + +  +    
Sbjct: 574 LSGAPADGDTFTIGPYAGGTNDGTNALALSKLVTAKSFGNGTVTLTGAYASYVNDIGNAA 633

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S           +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+
Sbjct: 634 SQLKSSSAAQTALVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 693

Query: 476 LEG 478
           L  
Sbjct: 694 LGL 696


>gi|94312669|ref|YP_585878.1| flagellar hook protein [Cupriavidus metallidurans CH34]
 gi|93356521|gb|ABF10609.1| flagellar hook protein [Cupriavidus metallidurans CH34]
          Length = 415

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/476 (8%), Positives = 99/476 (20%), Gaps = 65/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN---KNM 62
            F +  +  N A+     I  NI NA+   + +             +      N   ++ 
Sbjct: 2   GFGQGVSGLNAAASNLDVIGNNIANANTVGFKQSTAQFADVYAGSKIGLGTRVNSVVQSF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  + +    +       +                       + +   +    N S   
Sbjct: 62  TNGNISSTGRNLDVAISNGNGF-----FRLASTDGGVYYSRNGQFQRLDDGRLVNASGLQ 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                T+A  V               +               +     
Sbjct: 117 VTGYPAG----------TTAGGVAPQPIVISNAQMPPQATTNIKAQFQLDSRSTVPTNAF 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       +  +   S  + +   + N   +  Y           P +        
Sbjct: 167 VSTPGATPPVLPNSTMFNYSTAMTVYDSLGNKQQLTAYFGKSIPATTPAPPNAFGGTDWD 226

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             VT  S  +                                            L     
Sbjct: 227 MNVTDASGNV--------------------------------------------LQTVKL 242

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D                 +   +       +  +    Q+ ++        +      
Sbjct: 243 SFDANGMLKAPSATTMPTVTLPAANGAAAMTATLDLSGTTQFGADNDPKSIVQNGFTSGS 302

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     ++  + +   K+     +A       L     N   W     S    L 
Sbjct: 303 LLGFSVQSDGTILGSFSNEQTKSLGQIAMAAFGNAEGLKPEGNNV--WSATGASGQELLG 360

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        +         V+L  +L  LI  +++Y  + + I   D ++QTL+  
Sbjct: 361 VAG-GSMGTLQSGSVEESNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVNL 415


>gi|255022062|ref|ZP_05294068.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968548|gb|EET26104.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus
           ATCC 51756]
          Length = 661

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/432 (13%), Positives = 119/432 (27%), Gaps = 14/432 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----------N 49
           MSL  +     +    +     ++  NI N +   YV        +P             
Sbjct: 1   MSLNGILQVGLSGVLASENALQTVSNNIANENTPGYVSEVANLATNPSQPTTFPGGLGEG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V   +                +S         +       +       +  +  IS    
Sbjct: 61  VQTASISRNFSKFAQTQFMNATSMAAASSGEVNTLQQLSSLFPVTSGQSGLSSAISNFYA 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + ++ S N S     ++V+  A+ +   +  S   +  ++    ++++  +  +    S+
Sbjct: 121 AFQTLSTNPSSIPDRQSVLSQAQSLTAQYQNSINTIASVKNGLVQQMQQSVGTINALSSQ 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L  +N +I    +     +  LD +   L ++S+ IGI+TI  ++  ++V T  G TL +
Sbjct: 181 LAKINQSILATPSGSSIPNSLLDSQAAALDQLSKQIGINTITTSDGTLIVTTKSGATLVD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                    +            I         N  + +  G +   L  +  V    Q Q
Sbjct: 241 GSQSMKLAVQAGGQFQQPGQGGIVY--QPTGQNLTAKIAGGALGGALSAQARVN-QIQLQ 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L  +A+ ++   + +     +     G  I                  +        +  
Sbjct: 298 LGLLAQGIVAVTNSQQAKGVDLNGNFGAPIFSVQGPEVFPADTNQGNALITASVTDLSSV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                        WNV N A                F    V    T      +  +  G
Sbjct: 358 PPTTFTLEYNGSQWNVINDANGTSQTLTASSGGTLQFGGMTVQVSGTAAAGDSFLLDPAG 417

Query: 410 WLEKNRSDSHDL 421
                       
Sbjct: 418 ATAGAFQTVMTD 429



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 85/317 (26%), Gaps = 2/317 (0%)

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +   +++L+ V         +    +   D         +   G          +    +
Sbjct: 347 ITASVTDLSSVPPTTFTLEYNGSQWNVINDANGTSQTLTASSGGTLQFGGMTVQVSGTAA 406

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            G +                 T  ++    F       +   S     K      +    
Sbjct: 407 AGDSFLLDPAGATAGAFQTVMTDPNQIAAAFPYVASPGTVSSSGGLVNKNIGTESLSSGT 466

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V    N    +A V  G   +   +   S     +  + G+           S  + +  
Sbjct: 467 VVSTGNYGSGVAVVPSGIAPQSLSLTFTSATQYNILTSGGVVIASGSWGGPGSTAVVIPY 526

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 S      S          +            ++     + D     N   ++ +
Sbjct: 527 PSNGLASGSAMSFSWDGGQPVAGDSFTFSSGAPGDNANAVTMAQVSDQAVLQNG--SINQ 584

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              +           +      +  V +  + + SN  GVNL EE + ++   Q+Y  ++
Sbjct: 585 TIADLSSTYGNFTQVAKQSQSAANAVLSQATTALSNISGVNLNEEAAQVVNYTQAYQAAS 644

Query: 463 KLIMFTDKMLQTLLEGV 479
            +I  T+ + Q+LL+ V
Sbjct: 645 AIIQTTNTLFQSLLQAV 661


>gi|115353111|ref|YP_774950.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           AMMD]
 gi|115283099|gb|ABI88616.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           AMMD]
          Length = 665

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 129/414 (31%), Gaps = 19/414 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS   + N   +  N A     +  +NI NA    Y     +              P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L++  S  G      S  A               +  I+     
Sbjct: 60  NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+  + +T I NA+ +      + ++   +R   + ++   +S +  + S++
Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTSQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  +DQRD+ +  +S + G+  + RN++   V+ + G  L   
Sbjct: 178 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+            +   +++  G +  LL  R   +  
Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLSGKPGGNLFAVANPAVYSNQGNTGTASLSVSFAN 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +      D         + + + A    +        +   +    A  + N  
Sbjct: 357 AAQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410



 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 61/235 (25%)

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T +  +       V  +S+      K    A+           +   D  ++ L G  + 
Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKIAQGAVSAGYQVPTTPTKLTYDAASKSLSGFQAG 488

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                  +        +       +                 +                 
Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTITSTTQPAPAGVMNGVTVTLSGAPSDG 548

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           +   +  Y    +   ++   + +    +      TL       +  +    S       
Sbjct: 549 DSFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYAKYVNAIGNTASQLKSSSA 608

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663


>gi|168764488|ref|ZP_02789495.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4501]
 gi|189365520|gb|EDU83936.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4501]
          Length = 401

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 105/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNQVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                     +        +    Q     + +    +  K   
Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|90423517|ref|YP_531887.1| hypothetical protein RPC_2013 [Rhodopseudomonas palustris BisB18]
 gi|90105531|gb|ABD87568.1| protein of unknown function DUF1078-like [Rhodopseudomonas
           palustris BisB18]
          Length = 464

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/489 (10%), Positives = 124/489 (25%), Gaps = 34/489 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53
           MS+ A  N A +     S    +I  NI NA    + R DT       N          V
Sbjct: 1   MSITAAINTAISGMAAQSYAIGNISGNIANAHTPGFKRIDTSFADLVSNQGPKRTLAGPV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              +         L A             F  + +  S       S            + 
Sbjct: 61  LAEARFTTSVQGPLTATGVGTNMAINGSGFFTVMQRESG---SAQSVYTRRGDFAVDKQG 117

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNF--NTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           Y  N +   L    +D     V +      A      R     +    +  +    + + 
Sbjct: 118 YLVNGTGGYLLGNNLDPVSGRVTSSGLIKIANTTLPGRQTTRIDYAANLPKVPTTTASVG 177

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             +      +A   D           +   +++            + +Y + G+    + 
Sbjct: 178 GDSSPYTVASAVVIDPTLTAPDLTKKVVGAAQVPAFLDKSLMGPSLTMYMAGGSPASLST 237

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                 +   + T    +          ++ + S                +VP     + 
Sbjct: 238 RWAKVQDAAATATPPKNAIWNLFYASSSTAAKDSDWVNVGSAFSFDSAGKLVPPAHATV- 296

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                           +  + ++    +A     + +      S  +  N       +  
Sbjct: 297 ---------------SSSGAVSLKIPQVAVDGVSVGDITMNLGSSGLTQNAASAGTVTTN 341

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                          +++G   ++  + +    +     V        L   +     + 
Sbjct: 342 ALAQDGYASGSLKSLSVSGDGTIVGSFSNEMTASVATAGVVNFMNPNGLRPTSGG--NYE 399

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +   S +    +        I          ++  + S L+  +Q+Y+ + K++   ++M
Sbjct: 400 QSRDSGAPLAGLNG----GTIVGGNIEGSNSDVAGQFSKLVATQQAYSANVKVMTTANQM 455

Query: 472 LQTLLEGVK 480
           +  LL  V+
Sbjct: 456 MADLLNAVR 464


>gi|161503735|ref|YP_001570847.1| flagellar hook protein FlgE [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865082|gb|ABX21705.1| hypothetical protein SARI_01820 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 402

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 110/476 (23%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+    A   I   +   +   +    VN       +
Sbjct: 116 LTGYPATGTPP----------TIQQGANPAPITIPNTLMAAKSTTTASMQVNLN-----S 160

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +        +  D         + +     N +DM VY          V    + +   +
Sbjct: 161 TDPVPTKAFNPADADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPTAT 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +   F +  ++ S     +  G I                              
Sbjct: 221 APTAASTTLKFNENGILESGGTVNITTGTING---------------------------- 252

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 253 -------------------------ATAATFSLNFLNSMQQNTGANNIVATNQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|171322357|ref|ZP_02911181.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           MEX-5]
 gi|171092319|gb|EDT37688.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           MEX-5]
          Length = 665

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 130/414 (31%), Gaps = 19/414 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS   + N   +  N A     +  +NI NA    Y     +              P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L++  S  G      S  A               +  I+     
Sbjct: 60  NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+  + +T I NA+ +      + ++   +R   + ++   +S +  + +++
Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  +DQRD+ +  +S + G+  + RN++   V+ + G  L   
Sbjct: 178 AQLNQQITAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+            +   +++  G +  LL  R   +  
Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLAGKPGGNLFAVANPAVYSNQGNTGNASLSVSFAN 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           ++     D         + + + A    +        +   +    A  + N  
Sbjct: 357 ASQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410



 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 63/235 (26%)

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T +  +       V  +S+      K    A+           +   D  ++ L G  + 
Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKITQGAVSAGYQVPTTPTKLTYDAASKSLSGFQAG 488

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                  +        +       +         +       +                 
Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTIMSTTQPAPAGVMNGVTVTLSGAPSDG 548

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           +   +  Y    +   ++   + +    +      TL     N +  +    S       
Sbjct: 549 DAFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYANYVNAIGNTASQLKSSSA 608

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663


>gi|53717921|ref|YP_106907.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           K96243]
 gi|53724572|ref|YP_104805.1| flagellar hook-associated protein FlgK [Burkholderia mallei ATCC
           23344]
 gi|121601252|ref|YP_994298.1| flagellar hook-associated protein FlgK [Burkholderia mallei SAVP1]
 gi|124385698|ref|YP_001028053.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC
           10229]
 gi|126448312|ref|YP_001082860.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC
           10247]
 gi|126451511|ref|YP_001064571.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1106a]
 gi|167717670|ref|ZP_02400906.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           DM98]
 gi|167736711|ref|ZP_02409485.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           14]
 gi|167813810|ref|ZP_02445490.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           91]
 gi|167822327|ref|ZP_02453798.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           9]
 gi|167843917|ref|ZP_02469425.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           B7210]
 gi|167900916|ref|ZP_02488121.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           NCTC 13177]
 gi|242314954|ref|ZP_04813970.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1106b]
 gi|254174885|ref|ZP_04881546.1| flagellar hook-associated protein 1 [Burkholderia mallei ATCC
           10399]
 gi|254197004|ref|ZP_04903428.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           S13]
 gi|254359739|ref|ZP_04976010.1| flagellar hook-associated protein 1 [Burkholderia mallei
           2002721280]
 gi|52208335|emb|CAH34268.1| putative flagellar hook-associated protein [Burkholderia
           pseudomallei K96243]
 gi|52427995|gb|AAU48588.1| flagellar hook-associated protein 1 [Burkholderia mallei ATCC
           23344]
 gi|121230062|gb|ABM52580.1| flagellar hook-associated protein 1 [Burkholderia mallei SAVP1]
 gi|124293718|gb|ABN02987.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC
           10229]
 gi|126225153|gb|ABN88693.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1106a]
 gi|126241182|gb|ABO04275.1| flagellar hook-associated protein FlgK [Burkholderia mallei NCTC
           10247]
 gi|148028953|gb|EDK86885.1| flagellar hook-associated protein 1 [Burkholderia mallei
           2002721280]
 gi|160695930|gb|EDP85900.1| flagellar hook-associated protein 1 [Burkholderia mallei ATCC
           10399]
 gi|169653747|gb|EDS86440.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           S13]
 gi|242138193|gb|EES24595.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           1106b]
          Length = 667

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/498 (12%), Positives = 144/498 (28%), Gaps = 49/498 (9%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +  N A     +  +NI NA    Y     +   +          P+ V+ V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T   +        L+A  +         +  A                  I+     L++
Sbjct: 63  TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++  +
Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N+ I   ++     +  LDQRD+ + K+S++ G+  + ++N +  V+ S G  L      
Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVGNAS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S+                 ++  G +  LL  R   +   Q 
Sbjct: 240 YQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-------------- 334
           QL  +A       + ++ +  +    PG  +                             
Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGTQ 359

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
             T      Y      L D  + S        +      +        +     D    +
Sbjct: 360 PTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTVL 419

Query: 395 NTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
            T   L  ++  +              +          +    +S  Y    G       
Sbjct: 420 PTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG------- 472

Query: 449 SFLIKVEQSYNISNKLIM 466
                   +YN ++K + 
Sbjct: 473 ----TTTLAYNAASKTLS 486



 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S    V+     +  +   A  +   +  L  + +  +  +    +    +     
Sbjct: 343 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 402

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             +L  T     +F  + +       +    +G  +++            +   +     
Sbjct: 403 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 462

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                QL      L  + + K            +                +         
Sbjct: 463 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 522

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395
              + +       V      ++       D          N   ++   + + +     N
Sbjct: 523 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 582

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL       +  +    S           +   I+++  +  GVN  EE + L++ +
Sbjct: 583 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 642

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           Q Y  + K+I   + + QT+L  
Sbjct: 643 QLYQANAKVIQTANSVFQTVLGL 665


>gi|71280733|ref|YP_268222.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H]
 gi|71146473|gb|AAZ26946.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H]
          Length = 554

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/558 (8%), Positives = 119/558 (21%), Gaps = 91/558 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +  N A +       NI N +   +            +             V  
Sbjct: 2   SFNIALSGLNAAQKDLDVSSNNIANVNTVGFKESRAEFVDVYASSLLAAGKTKVGDGVLT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++A+        F A    + + +           + + + +++ 
Sbjct: 62  ADVAQQFSQGSIQFTNNALDLAITGNGFFATVPELGSLETS----YTRAGQFKLNSDNFV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQ----------------------------- 146
            N     L    ++          ++A  ++                             
Sbjct: 118 VNSQGGHLLGFPVNPDGSSASVSLSTAEPIRIPTESGTPTKTSEVDVRMNLPAGAGYITS 177

Query: 147 -----KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                             ++          +    +K   A   +        D     +
Sbjct: 178 APANFDPEDPLTFNSSTSVTIFDSLGKSHIMTYFFVKDDPAVAPNQWMMFASVDGKPIDL 237

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           ++   +                         +        +      +            
Sbjct: 238 ADDPTVQATAEAAVVTAQANVATAQASVVTSQTTLNTTQATLNTEEANVITAQATYDAIV 297

Query: 262 NQGSAVPKGKIKALLQIRDSVV--------------PIFQNQLDEMARVLIGSFSEKDPI 307
              +A     + A++  RD+ +                  N L   +  +  +  E    
Sbjct: 298 GVPTAAQDATLAAVIATRDAAIITRDAALNAQTVSETNLTNSLAIASTAISATTPESGTG 357

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
              +            +          +     +    ++P+              N   
Sbjct: 358 TKGARLTYNSSGDFISQSPSPTNGGIRTVDFSSHLPNGADPTQTVKVDFNLDTAGPNPNE 417

Query: 368 LAGYPDLI---------------------------NHYCDSFNKNFIFDPVAGINTNVTL 400
              +                                 Y +  ++      +        L
Sbjct: 418 PTQFASNFEVTALNQDGLAVGRLTGIEIGVDGLVRATYSNGTSQPLSRIAMVNFANEQGL 477

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +   +   W E   S            F  I+ S      VNL  EL  LI  ++++  
Sbjct: 478 SQTGGS--NWKESLVSGKALAGEAGSGTFGTINSSALEQSNVNLTTELIDLISAQRNFQA 535

Query: 461 SNKLIMFTDKMLQTLLEG 478
           +++ +   +++ QT+L+ 
Sbjct: 536 NSRALEVDNQLNQTILQI 553


>gi|167917171|ref|ZP_02504262.1| flagellar hook-associated protein FlgK [Burkholderia pseudomallei
           BCC215]
          Length = 667

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/498 (12%), Positives = 144/498 (28%), Gaps = 49/498 (9%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +  N A     +  +NI NA    Y     +   +          P+ V+ V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T   +        L+A  +         +  A                  I+     L++
Sbjct: 63  TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++  +
Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAARQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N+ I   ++     +  LDQRD+ + K+S++ G+  + ++N +  V+ S G  L      
Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQLAGVQVV-QSNGNYSVFLSGGQPLVVGNAS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S+                 ++  G +  LL  R   +   Q 
Sbjct: 240 YQLATVASPSDPSELTIVSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI-------------- 334
           QL  +A       + ++ +  +    PG  +                             
Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGTQ 359

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
             T      Y      L D  + S        +      +        +     D    +
Sbjct: 360 PTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTVL 419

Query: 395 NTNVTLLEYARNSIGWLEKN------RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
            T   L  ++  +              +          +    +S  Y    G       
Sbjct: 420 PTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGSVSAGYQLPSG------- 472

Query: 449 SFLIKVEQSYNISNKLIM 466
                   +YN ++K + 
Sbjct: 473 ----TTTLAYNAASKTLS 486



 Score = 87.8 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 84/323 (26%), Gaps = 8/323 (2%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S    V+     +  +   A  +   +  L  + +  +  +    +    +     
Sbjct: 343 NNTGSATLSVSFVDGTQPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGL 402

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
             +L  T     +F  + +       +    +G  +++            +   +     
Sbjct: 403 KLSLSSTPNAGDSFTVLPTRGALDGFSLATANGSAIAAASPVLAAGVATNSGTGVISQGS 462

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                QL      L  + + K            +                +         
Sbjct: 463 VSAGYQLPSGTTTLAYNAASKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPSKGAS 522

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGIN 395
              + +       V      ++       D          N   ++   + + +     N
Sbjct: 523 MTISSTTQPAPSGVMNGVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNN 582

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              TL       +  +    S           +   I+++  +  GVN  EE + L++ +
Sbjct: 583 GTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQ 642

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           Q Y  + K+I   + + QT+L  
Sbjct: 643 QLYQANAKVIQTANSVFQTVLGL 665


>gi|161614600|ref|YP_001588565.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168237259|ref|ZP_02662317.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244776|ref|ZP_02669708.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449419|ref|YP_002045176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194736988|ref|YP_002114176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|161363964|gb|ABX67732.1| hypothetical protein SPAB_02350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407723|gb|ACF67942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194712490|gb|ACF91711.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289882|gb|EDY29243.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336442|gb|EDZ23206.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 403

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/476 (11%), Positives = 106/476 (22%), Gaps = 78/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q     A               + I N        T  +  I   + 
Sbjct: 116 LTGYPATGTPPTIQQGANPA--------------PITIPNTLMAAKSTTTASMQINLNST 161

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               +       D         + +     N +DM VY          V    + +   +
Sbjct: 162 DPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAAT 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                 +  +F     + S     +  G I                              
Sbjct: 222 APAAPSTTLVFNANGTLQSGGTVNITTGTING---------------------------- 253

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 254 -------------------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGD 288

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 289 LVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLG 346

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 347 TAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402


>gi|74317652|ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259]
 gi|74057147|gb|AAZ97587.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259]
          Length = 405

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 109/483 (22%), Gaps = 90/483 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55
            F +  +  N A++    I  N+ NA    + +          N             V  
Sbjct: 2   SFQQGLSGLNAAAKNLDVIGNNVSNASTVGFKQSQAQFADVYANSLTGAGGSSIGIGVKV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      + + ++ +        F  +       D+          + +     Y 
Sbjct: 62  AQVAQQFTQGNITSTNNPLDMAINGGGFFRM-------DNGGEIAYQRNGQFQLDKNGYI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +   L     + +  +                                   L +   
Sbjct: 115 VNPTGGKLTGYTANASGVLSTGAPA----------------------------PLAINTA 146

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +  +  S+ +A   LD     L   S  +   T   ++    VY S G           
Sbjct: 147 DLTPQATSEVNAVLNLDSTGTALPAASFDMNDPTTYHSSTAASVYDSLGNQHTLQTYYVK 206

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 +    S+  PI   G  VS+   +                              
Sbjct: 207 TAAGTWNVYAASDGTPIPAAGTPVSTLTFNGSGALTGGG--------------------- 245

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                                  +       Q+ S  S      
Sbjct: 246 ----------------------QFTVTAPVTTGANPITAAFDFTGTTQFGSAFSVNTLNQ 283

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      N+     ++  Y +  +       +A       L +   N   W E   
Sbjct: 284 DGYTSGRLAGFNIGADGTILGRYTNGQSAVLGQVVLANFANPNGLQQMGNNL--WTETAT 341

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +          +  S      V+L  EL  +I  ++ Y  + + I   D +LQTL
Sbjct: 342 SGTPLVGTPDSGGLGVLQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKSQDAVLQTL 401

Query: 476 LEG 478
           +  
Sbjct: 402 VNL 404


>gi|310767296|gb|ADP12246.1| flagellar hook-associated protein FlgK [Erwinia sp. Ejp617]
          Length = 551

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/550 (12%), Positives = 141/550 (25%), Gaps = 73/550 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  + N A +  + +S    +   NI N     Y R+ T+   S               V
Sbjct: 1   MSNLINTAMSGLSASSAALNTTSNNITNYAVTGYSRQTTVLNQSASTLSGGNYYGNGAAV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQ----------------------QRLLQSFEALKEMM 90
            +   E     +K L A S+                             +Q      + +
Sbjct: 61  SSVYREYDQFINKQLLAASTQSSALSTQAGQMSNIDDMMSGTTNTLSTTIQDLFKSLQTL 120

Query: 91  SADDHYNNSPTHYISKLRDSLESYSK------------NLSEDILGKTVIDNAEEVVQNF 138
           +++   ++S    + K    +  +              N S     + V + A+++    
Sbjct: 121 ASNASDSSSRQAVLGKAEGLVNQFKATDTYLTNVESGLNTSVKSTVEQVNNYAKQIANVN 180

Query: 139 NTSA-------------------------REVQKIRADADKEIELEISNLRRFLSELTVV 173
              A                          ++  +           IS            
Sbjct: 181 QQIAKLKGAGAGSEPNDLLDKRDLLVSQLNKLVGVNVSQQDGGSYSISIGNGISLVQGDR 240

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
            + +    +S   A   +   D +    +EI        +   ++ +  D   +   + +
Sbjct: 241 FEQLAAVPSSADPARTTIASVDSVTGAKTEIAESQFTSGSLGGLLAFRHDLDGVRNQIGQ 300

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                  +  T          D        G+               SV        D  
Sbjct: 301 LALALGSSFNTQHQAGVDSDGDKGEAFFKLGNPSATSNSLNKGNASLSVAYDASKTGDVK 360

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           A     +            +   +   D   D   K                ++   ++ 
Sbjct: 361 ASNYKMTLENGSWNVVRLSDNSKVKDVDTSTDGTLKFDGLTVTVGATGTAQNNDSYIIKP 420

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF----IFDPVAGINTNVTLLEYARNSIG 409
             SV      N+ + A          +S N+N            IN   TL +   + + 
Sbjct: 421 VSSVISGMSVNITDAAKLAASSPTGGESNNENVKSLLGLQTQDLINGKSTLTQAYASLVA 480

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    S     +     V   ++    +  GVNL EE S L + +Q Y  + +++    
Sbjct: 481 DVGNKTSSLEATNTTQSAVVKQLTSQQQSVSGVNLDEEYSNLARYQQYYMANAQVLQTAS 540

Query: 470 KMLQTLLEGV 479
            + Q+LL  V
Sbjct: 541 TLFQSLLTAV 550


>gi|149173751|ref|ZP_01852380.1| probable flagellar hook-associated protein [Planctomyces maris DSM
           8797]
 gi|148847281|gb|EDL61615.1| probable flagellar hook-associated protein [Planctomyces maris DSM
           8797]
          Length = 558

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 138/406 (33%), Gaps = 25/406 (6%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQRSEN 59
           A+              +NI NA    Y+R + +            I+   V +   + + 
Sbjct: 2   AKQSLEIFGTGIQVAGQNISNAGTPGYIREELVLNPSAPYRQGALITGTGVEISGIQQQI 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
               +  +H+ ++         +     E     +  +   +  ++    ++ +     S
Sbjct: 62  DQFLETRIHSANTDFSSIDERNTIFKQLENELR-ELTDGDLSTGLNNFLSTINNVVNQPS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                + VI+ AE+   + ++    + ++R      +E  +S     + ++  +N  I  
Sbjct: 121 SIPDREFVINEAEKFAADISSLRLRLNELREVQSVNVENLVSEANDLIDKIVDLNPKISK 180

Query: 180 KTASK---HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
             AS     DA     QR   L ++SE+I I    R++  + V+T     +     + + 
Sbjct: 181 LEASGLLQSDAGALRSQRYEALNRLSELIPIRYRERSDGAIDVFTGSDYLVLAGTSQKLQ 240

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +      V      +        +    +   G++K +++ RD ++  F +QLD  A  
Sbjct: 241 LDTDTDRGVVVHEVLLT------QTQSNISRTGGELKGIIEGRDDILGGFVDQLDTYASN 294

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           LI  F++       +     +  A    D    L   +S        +++N    +   +
Sbjct: 295 LIFEFNKIHASGEGTAGFQQVTSASRALDSTATLNSELSGL-----PFQANHGSFQIKVT 349

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                + N   +    D I       +     + +A +N++V+   
Sbjct: 350 NKSTGITNTVTVNVDLDGIGSDTTLDSLASTINGLANLNSSVSTDG 395



 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/329 (10%), Positives = 99/329 (30%), Gaps = 3/329 (0%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
           A   ++++L+    R  +    ++       + +  +    ++ RD +L    + +    
Sbjct: 233 AGTSQKLQLDTDTDRGVVVHEVLLTQTQSNISRTGGELKGIIEGRDDILGGFVDQLDTYA 292

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                    ++ S   T         +    ++ T+ SE + +       S         
Sbjct: 293 SNLIFEFNKIHASGEGTAGFQQVTSASRALDSTATLNSELSGLPFQANHGSFQIKVTNKS 352

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
             I   + +   +  I  +   +     I   +  +        +     AD      N 
Sbjct: 353 TGITNTVTVNVDLDGIGSDTTLDSLASTINGLANLNSSVSTDGRLSISADADYEFKFSND 412

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               ++           + S +     VS+   +      G     +   ++       +
Sbjct: 413 TSGALAAIGINTLFTGGDSSDIDVNSVVSQNQQFLAT---GQGAGPSDGSNAVLLAAFSE 469

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                   ++L  +    +  L ++ +    L   +Q   + +        GV++ EE  
Sbjct: 470 KPIDSLGGISLDNFYEKIVSNLAQSSASEGALAEGAQTFRDSLMSQREQFSGVSIDEETI 529

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            ++  ++++  + +L+   D++   LL  
Sbjct: 530 NVLTYQRAFQSAARLVSTIDELFTILLNI 558


>gi|254230140|ref|ZP_04923535.1| FlgE [Vibrio sp. Ex25]
 gi|262394939|ref|YP_003286793.1| flagellar hook protein FlgE [Vibrio sp. Ex25]
 gi|151937333|gb|EDN56196.1| FlgE [Vibrio sp. Ex25]
 gi|262338533|gb|ACY52328.1| flagellar hook protein FlgE [Vibrio sp. Ex25]
          Length = 437

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/481 (8%), Positives = 112/481 (23%), Gaps = 57/481 (11%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRS 57
             + +  + A     +   NI NA+   +            N                  
Sbjct: 3   YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +     F A+ +                     + E+Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKERLTPQQNE---LTRNGAFHLNKENYMVT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    +D +   V ++       +    +   E           +      N  +
Sbjct: 120 ANDEFLLGYQVDPSSGEVSSY-------EPQPINIPAEFGKPKQTANIEVGVNLPANGDL 172

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           K  T          D  D      S    I   +  +  +  Y     T   T       
Sbjct: 173 KDPTQ--------FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTV 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                    + +            +       G + +L                +    +
Sbjct: 225 TDKEGEKPLNVAAGDAQTPTGHVGHTMKFNNDGTLASLNN-------------GQPITSV 271

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  +    +          +                     Q+ +     +     
Sbjct: 272 ALGDPATNTTPVDMNGADPAQTLNFGLGSA--------------TQFAAPFELTKFDEDG 317

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +        +      ++  Y +  N       +  +     L +  +    W     S 
Sbjct: 318 ATTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDK--KGGTQWDSTQFSG 375

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  ++  F  I+        +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 376 DKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435

Query: 478 G 478
            
Sbjct: 436 I 436


>gi|170703622|ref|ZP_02894363.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           IOP40-10]
 gi|170131468|gb|EDT00055.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           IOP40-10]
          Length = 665

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 130/414 (31%), Gaps = 19/414 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS   + N   +  N A     +  +NI NA    Y     +              P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L++  S  G      S  A               +  I+     
Sbjct: 60  NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+  + +T I NA+ +      + ++   +R   + ++   +S +  + +++
Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLGDQLKAAGQQYDALRQSVNTQLTSTVSQINTYTAQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  +DQRD+ +  +S + G+  + RN++   V+ + G  L   
Sbjct: 178 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+            +   +++  G +  LL  R   +  
Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLSGKPGGNLFTVANPAVYSNQGNTGNASLSVSFAN 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           ++     D         + + + A    +        +   +    A  + N  
Sbjct: 357 ASQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410



 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 62/235 (26%)

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T +  +       V  +S+      K    A+           +   D  ++ L G  + 
Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKITQGAVSAGYQVPTTPTKLTYDAASKSLSGFQAG 488

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                  +        +       +                 +                 
Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTITSTTQPAPAGVMNGVTVTLSGAPSDG 548

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           +   +  Y    +   ++   + +    +      TL     N +  +    S       
Sbjct: 549 DSFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYANYVNGIGNTASQLKSSSA 608

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663


>gi|152997582|ref|YP_001342417.1| hypothetical protein Mmwyl1_3580 [Marinomonas sp. MWYL1]
 gi|150838506|gb|ABR72482.1| protein of unknown function DUF1078 domain protein [Marinomonas sp.
           MWYL1]
          Length = 565

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/565 (10%), Positives = 136/565 (24%), Gaps = 94/565 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----------VTVVT 54
            FN A +    ++   +    NI NAD   + +                       + V+
Sbjct: 2   GFNTALSGIKASADYLSVTGNNIANADTTGFKKSRIEFDDLYNTSVLGAGSGNNIGSGVS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFE----------------ALKEMMSADDHYNN 98
               ++      L    + +        F                  L E      +  N
Sbjct: 62  VSKVSQEFSSGNLSYTDNNLDLAIDGSGFFVIDAGIANAYTRAGNFKLDENGFLVTNSGN 121

Query: 99  SPTHYISKLRDSLESYSK-------NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
           +   + +       + +           E      +  N +   ++     + +      
Sbjct: 122 NVQGFNAVDGVVGGNLADLKIPTDRIPPEPTTSMGLKVNLDSKNEDVPPFIKAIFDPNDP 181

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                      +        V     K +  + +  H  +D        +  +       
Sbjct: 182 DTYNFTQTQGVVDGNGQSHIVTYYYAKGELPNTYKVHATVDGNLTDDAGLPFLAETYATF 241

Query: 212 RNNNDMVVYTSDGT-----TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG-- 264
                   Y  DG      +L    P + N   + + T    +    + G  +++     
Sbjct: 242 NTAEGGTDYNGDGVEEAPFSLLYVGPNEPNSVDVATGTKAPLAVSGTLGGAAITATLTPE 301

Query: 265 -------------------------SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                                    +      +     +    +   +N   E+   + G
Sbjct: 302 EIRDSSIVSREAFDPLNPDTYSYGNTRTTYDSLGESHTLGYYFIKQGENNTYELRVTMDG 361

Query: 300 SFSEKDPIAGNSENVPGLFIAD--------------------------GIKDLDNKLCQG 333
             S  DP  G          A                            ++ +D    + 
Sbjct: 362 EESFVDPTTGEDARYLEKNTAVSFDAAGNLMGVYRGISPLGIEQPVPLEVRGIDPTNRER 421

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           I++         +  +      +          +      LI +Y +          +A 
Sbjct: 422 ITQLDLAGSTQFALANTDTFEQNGFSAGELQGVSFDSDGLLIANYTNQQTATLGQIALAT 481

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            ++   L+        W+    S   D+   +      I+        V+L  EL  LI+
Sbjct: 482 FDSTDGLMPSGHTM--WVATKTSGPADIGRPNSATLGKIAGGALEESNVDLTAELVALIE 539

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            +++Y  ++K +   + + QT++  
Sbjct: 540 AQRNYQANSKTLETENTVTQTIINL 564


>gi|200390428|ref|ZP_03217039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602873|gb|EDZ01419.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 403

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/473 (9%), Positives = 100/473 (21%), Gaps = 72/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              + + R   + +                         T    
Sbjct: 97  NGQFK--------------LDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNT 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                      +   ++    +                        P    F   ++ + 
Sbjct: 143 LMAAKSTTTASMQINLNSTDPV------------------------PSKTPFSVSDADSY 178

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             +      D    + +      K K                      +  L  + +   
Sbjct: 179 NKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENGIL 238

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G  +   G                     +    Q     + +    +  K      
Sbjct: 239 ESGGTVDIETGEIN-------GATKATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 291

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 349

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402


>gi|222147589|ref|YP_002548546.1| flagellar hook protein FlgE [Agrobacterium vitis S4]
 gi|221734577|gb|ACM35540.1| flagellar hook protein [Agrobacterium vitis S4]
          Length = 418

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/482 (10%), Positives = 117/482 (24%), Gaps = 66/482 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSEN 59
           MSL    N A +     + + +++  N+ N+D   Y R  T   ++   +    T  S  
Sbjct: 1   MSLSGSMNTAVSGLQAQASKLSTVGDNVANSDTTGYKRVSTAFSSLVVGSSGSGTYNSGG 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNL 118
                    +   +              +          S         +     Y  N 
Sbjct: 61  VQTTTVNSISEEGSYQSSTSETDLAIKGDGYFVVQDEAGSVFLTRAGDFKADDNGYMVNS 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +   L     +N E         A  +         +I+    +     + L   N    
Sbjct: 121 AGYTLLGYSYENGEP--------ASVINGFEGLEPVKIQDNSISANATTNALIEGNLKSS 172

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
               S                                            ++++     ++
Sbjct: 173 EPIVSGDLPDSNSAS-----------------------ATWSFKSSMVAYDSLGNANQYD 209

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              + T  +E           +         G + +     DS                 
Sbjct: 210 IYYTKTADNEWQADIFRTSEATDETNFPYTNGVLGSTTLTFDSD---------------- 253

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                   ++               + ++  +          + +   + +      SV+
Sbjct: 254 ------GTVSSGGTFTFTDSTTSAPQTIEVDMSTMTQLNSANSSEGDVDGNGASAASSVT 307

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                N+          N Y  +       D +  +N              +     + +
Sbjct: 308 VNSSGNIVATYQDGSTANLYKVALATVASPDNMKSVNGT-----------AYQVTADAGT 356

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +   +   F  I+     T  V+L  EL+ +I+ ++SY+ ++K+      ML TL+  
Sbjct: 357 VVVGFANTGSFGSINSKTLETSNVDLATELTNMIQSQRSYSANSKVFQTAADMLDTLISL 416

Query: 479 VK 480
            +
Sbjct: 417 KR 418


>gi|218549196|ref|YP_002382987.1| flagellar hook protein FlgE [Escherichia fergusonii ATCC 35469]
 gi|218356737|emb|CAQ89365.1| flagellar hook protein [Escherichia fergusonii ATCC 35469]
          Length = 401

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDIAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    A++    
Sbjct: 116 LTGYPAAGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTAAMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T   T           +
Sbjct: 160 SSDPLPTVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTKDNTWQVYTQDSSDAA 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T  +   F    ++   + + +  G I                              
Sbjct: 220 SQATQATTLEFNANGMLVKGETANITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------AVPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQASGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|126444045|ref|YP_001061246.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668]
 gi|134280998|ref|ZP_01767708.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia pseudomallei 305]
 gi|167725930|ref|ZP_02409166.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98]
 gi|167905090|ref|ZP_02492295.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177]
 gi|254182894|ref|ZP_04889487.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655]
 gi|254299686|ref|ZP_04967135.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e]
 gi|125657218|gb|ABN48706.1| flagellar hook protein FlgE [Burkholderia pseudomallei]
 gi|126223536|gb|ABN87041.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668]
 gi|134248020|gb|EBA48104.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia pseudomallei 305]
 gi|157809637|gb|EDO86807.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e]
 gi|184213428|gb|EDU10471.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655]
          Length = 395

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/474 (8%), Positives = 102/474 (21%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N  + Q  +I  NI NA+   +                             
Sbjct: 2   SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMV------------------ 43

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                    G Q       ++ + +     +  +       +  +    +K+    +L  
Sbjct: 44  --------AGTQANGTYIGSITQSVGTRGGFLPTGRALDGAIDGNGFFVTKDSDGSMLFT 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  +             +    +    ++ +            +            
Sbjct: 96  RFGYFQRDADGYIVDGFGRRAQGYGASGAYGDIRVPTDTEPAKASDSLEYVGNLSADWAA 155

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             +   D+ D      S    +   +   + +  Y   G                     
Sbjct: 156 PKNPNFDKDDDTSFNHSVASTVYDSLGRQHIVTQYFVKGQP------------PSTDVIA 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +   + G             G++ A     D  +                      
Sbjct: 204 YYAMDGEIVGGNTPVQTVLQFDTNGQLTAPNSPVDLDLGT-------------------- 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I        Q     +   +  +     +   
Sbjct: 244 --------------------PAGASALAIKVNYAGTTQVAGETTTTVNRDNGYAAGVPGE 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     ++  Y +   +      +A       L         W     S +  +    
Sbjct: 284 VMLDEDGGVVVQYSNGKQRKVGSLALATFANQDGLSAVGD--TAWRASAASGNPLIGSAG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +          ++ +EL  ++  +++Y  ++K++   ++M+Q L++ +
Sbjct: 342 SGALGKVVAGSLELSNADVTQELVDMMSAQRNYQANSKVLSTENQMMQALMQAL 395


>gi|288962673|ref|YP_003452967.1| flagellar hook protein [Azospirillum sp. B510]
 gi|288914939|dbj|BAI76423.1| flagellar hook protein [Azospirillum sp. B510]
          Length = 427

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/488 (11%), Positives = 116/488 (23%), Gaps = 69/488 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTV 52
           MSL +      +     S + A+I  NI N+    Y R     +            + + 
Sbjct: 1   MSLYSAMRSGVSGMAAQSSRLAAISDNISNSQTVGYKRATVDFSTLVTAPGDRTSYSASG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V      +   D  L    S+         F  +    +    Y                
Sbjct: 61  VQSNLHYQMQQDGTLLGTGSSTDMAISGDGFFVVGNRATGTPDYA---LTRAGSFLPDDG 117

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            + +N +   L    +D    +                  +     ++  +         
Sbjct: 118 GFLRNTAGQYLQGWKLDPNGNLG---------------AVNTTRFDDLKTINVGNLAYGG 162

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                   T +                    +     I  N   +V   S  T       
Sbjct: 163 SRTTKMGLTGNLPAQATAGTNFTTTTTFYDSLGEAKDIQLNWKMIVPPDSAATPTPIDGK 222

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            ++      +YTVT                                              
Sbjct: 223 WELTVTPPGNYTVTPTG----------------------------------------PQS 242

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +    +G  +        +      F         +      +  +    Q R +    +
Sbjct: 243 ITFASVGPNAGMMVDGSGNPLGSLPFTITSQTSTTSPTPDSFTLNVSDITQLRGDYVP-Q 301

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                +K       N+ G   L   Y +   +     PVA +     L   A+    +  
Sbjct: 302 ITADGAKAGRVTSVNVDGTGKLWALYDNGARQALYQVPVANVTNPDGL--VAQTGNTFTL 359

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  L   +      +  S      V++  EL  LI+ +++Y+ S  L+  TD+M+
Sbjct: 360 GRDSGTLTLSAGNSGKAGSVVGSALEQSNVDIATELVSLIETQRAYSSSATLVRTTDEMV 419

Query: 473 QTLLEGVK 480
           +      +
Sbjct: 420 EETTRLKR 427


>gi|291558205|emb|CBL35322.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a]
          Length = 503

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/505 (8%), Positives = 117/505 (23%), Gaps = 47/505 (9%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISP--------------ENVTVVTQRSENKNMFDKV 66
              I  NI N +   +    T                      V         K      
Sbjct: 1   MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           +   S       +     +        D   N                  + + +++   
Sbjct: 61  VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGNMVLGV 120

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELE---ISNLRRFLSELTVVNDAIKFKTAS 183
             D       +   +    + +  +A     +     +      ++    +  I      
Sbjct: 121 SGDATGVDASSNRITFVVPEVLDNEASYSKTITYKGGTYPLTVSADTATPDGNISVGFTV 180

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS- 242
               + ++    +++Q   +    +     +       + G ++   +P     + +   
Sbjct: 181 GESDYAYMSGNKLVVQLNEKNDYTNLNDLEDAVTRACENGGVSIEGVLPLHFELDTVPPA 240

Query: 243 --YTVTSESNPIFIDGVVVSSNQG------------------------SAVPKGKIKALL 276
                T+ +N + +D     ++                              K     L 
Sbjct: 241 ADIPATTATNTMKLDDGTTKASLTFTTVNAGEYANNYTINLRYSKNAADTTAKWSDNGLT 300

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                   +   Q             +    + + +   G        D    L  G + 
Sbjct: 301 ISVCPGATVADIQAAVDKAAGSNEKYQLKVTSTDWDAANGALETLLATDGKVGLAGGSNN 360

Query: 337 TICVNPQYRSNPSFLRDG-GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                 Q   N         +       +   +     +   +            +   +
Sbjct: 361 FFSDMVQLLGNIKMTDGRVAATQTVKDLDSVYINEDGTIYGVHSVHGIIMLGRIDIVTFD 420

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L +   +   W E   S    +++  +     +         V+L +E S +I  +
Sbjct: 421 NPNGLEQVGSSY--WRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQ 478

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  ++++I  +D ML+ ++   +
Sbjct: 479 RGFQANSRIITTSDTMLEEIVNLKR 503


>gi|292670487|ref|ZP_06603913.1| flagellar basal body and hook protein [Selenomonas noxia ATCC
           43541]
 gi|292647897|gb|EFF65869.1| flagellar basal body and hook protein [Selenomonas noxia ATCC
           43541]
          Length = 506

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/510 (10%), Positives = 120/510 (23%), Gaps = 54/510 (10%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTIS-----------------------PENVTVVTQRS 57
              I  NI N +   +                                    V+V     
Sbjct: 1   MDVIGNNIANVNTTGFKAGRVTFEDMLSQTLSGAASPGTTIGGTNPKQVGLGVSVGGI-- 58

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-------------THYI 104
            +    D  + +            +   +K         N +                ++
Sbjct: 59  -DTIFSDGSVQSTGKNTDLALTGNALFVVKRGDQTYYTRNGAFEFDAKGNYVLPSSGLHV 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
               +   + SK  +E      VID    +      +    + + A+         S+ R
Sbjct: 118 QGWMNKTTNNSKVSTEGAAENIVIDAGRIMGPEQTDTVSYSENLDANTPIITGYSFSDPR 177

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                      +  + TAS+                 S    I   +        Y S G
Sbjct: 178 TTPPTPHARTTSGMYITASQAQPVTLSLSDGTKQTVTSGTYTIGRSMPKVTSFGYYDSSG 237

Query: 225 T--------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                          T+        +  K  S  +    NP   +    ++    +    
Sbjct: 238 NKHEGLLILEKADSRTVTYQDADGNSVTKRASTWIARVGNPTARNTGGSTTTHTLSSATL 297

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                  +R  V+      L       +   +    ++ NS                 + 
Sbjct: 298 AFDENGVLRAGVLGGTSPNLTHDTDSPVTPPAVPPAVSANSIENATFTATHSNAVSSPQS 357

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                          +    ++   +          ++     +   Y +   +      
Sbjct: 358 ITVQFANNESPLTQYAGYDTVKAAANGYASGSLASVSVDSTGVITGTYTNGVRRAEAQIG 417

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           VA  +    L +   +       + S               I+ S      V++ ++ S 
Sbjct: 418 VAKFSNPSGLTKIGGSLYQESNNSNSKVVRAQTVESTGAK-ITPSALEMSNVDIADQFSD 476

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +I  ++ +  ++K+I   D+ML+TL+   +
Sbjct: 477 MIITQRGFQSNSKVITVGDEMLETLINMKR 506


>gi|207728352|ref|YP_002256746.1| flagellar hook-associated protein 1 [Ralstonia solanacearum MolK2]
 gi|206591598|emb|CAQ57210.1| flagellar hook-associated protein 1 [Ralstonia solanacearum MolK2]
          Length = 642

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 130/407 (31%), Gaps = 15/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N A      A         NI NA    Y R++ + T +           + V V 
Sbjct: 3   SSLLNIAATGLRAADVNLQVTGNNIANASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  +A       Q       + S     N+     ++   ++ +S
Sbjct: 63  TVKRIYDQFLTAQVQSGQAATSAAD--QLSSLASSLDSYLSDSNSGLGTALTGFFNAADS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  +  A  +   FN    ++  +    + +++ +++++     ++  +
Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAIGGQLASLSNQVNTQVQTQVNSVNSTAQQIAAL 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ND I    A+     A+D  DQRD L+Q +++ I  S +  ++    VY  +G  L +  
Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    + Y  T  S         VS +  S +  G +  L+Q R + +   QN + 
Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNTLIPAQNSVG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    + ++    +     G  +                          +N    
Sbjct: 300 RLAAAITADVNTQNKEGMDLNGKLGTDLFSIAAPSVAPSSSNTGTGALTATITNANAGQG 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V +       +         + +   + G   + 
Sbjct: 360 NDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSG 406



 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +         R +   +   +  +  +++ Q    Q    +    +      +
Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGSQS 242

Query: 99  SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                ++       L    K+ +  +           +          +   +    +  
Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNTLIPAQNSVGRLA 302

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +++     E   +N  +     S           +     ++  I  +   + N+ 
Sbjct: 303 AAITADVNTQNKEGMDLNGKLGTDLFSIAAPSVAPSSSNTGTGALTATITNANAGQGNDY 362

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261
            V Y+    T+             +  T                         +      
Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSGDSFLVRPTANAASTMQ 422

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              +        + + +           +  +      + +        + +   L    
Sbjct: 423 TLTADYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSAINLTYSGGSLSGFP 482

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   +                Q  +                 +   ++          ++
Sbjct: 483 GSVTVTANGTSTTYTGTAPYTQGATYSFNGIQMSLSGTPATNDTFTVSANTANSTDGHNA 542

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + +     N   ++     N +  +    S +       + +    +    +  G
Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQSSQASANLTSQKSLLASSTAQQQSVSG 602

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL +E   L+K +Q+Y  + K++   + +  +LL  
Sbjct: 603 VNLDDEAMSLMKYQQAYQAAAKVMQTANSLFDSLLSI 639


>gi|163744346|ref|ZP_02151706.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45]
 gi|161381164|gb|EDQ05573.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45]
          Length = 422

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/485 (10%), Positives = 120/485 (24%), Gaps = 68/485 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+ +      +     S +  +I  NI NA+   Y R  +                   
Sbjct: 1   MSITSALQIGVSGLQANSSRVQNISSNIANANTVGYRRTFSEFVT--------------- 45

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                         G  +     +    + +  +    + T  ++   D     S+N ++
Sbjct: 46  -----------QNTGSTQAGVLTDVRANISTNGNIVGTNSTTDLAVQGDGFFVVSRNAND 94

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            I     +  A                                          N  ++  
Sbjct: 95  PIESNYYLTRAGSFT-----------------------------------PDQNGDLRNS 119

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                         +      +    +ST+   +  +    S    +   VP        
Sbjct: 120 AGYFLSGFPTDAAGNTGSVSSTSYNDLSTVNIASYQVQGTPSSSVGVSGNVPAQETGPGT 179

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 S    +   G   +            +  + I D     + +           +
Sbjct: 180 TGTAFESTLRYVNQLGGSDALTLSWTPGAVDNEWTVSITDEAGTNYGDATVNFTDSGADA 239

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKL-----CQGISETICVNPQYRSNPSFLRDGG 355
            S      G     P   +                  G   T     Q+  + +      
Sbjct: 240 GSPASYTPGTLPIDPATGVVTLSITNGGTPQALEIDFGAPGTFGGMTQFSGDYTPPAFTD 299

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             ++        ++    L   + +   +     P+A +     +     +   ++    
Sbjct: 300 DGTETGSLERAEMSDSGVLFGVFDNGQRRALFQVPLANVANPDQMRSV--DGNAYVATRD 357

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  L          I+ +      V++ +EL+ LI+ +++Y+ S K+I  +D+ML   
Sbjct: 358 SGAVSLGNPMLNGLGSINSNALEGSNVDIAQELTDLIQTQRAYSSSAKIITTSDEMLSET 417

Query: 476 LEGVK 480
           L   +
Sbjct: 418 LNIKR 422


>gi|172061965|ref|YP_001809617.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           MC40-6]
 gi|171994482|gb|ACB65401.1| flagellar hook-associated protein FlgK [Burkholderia ambifaria
           MC40-6]
          Length = 665

 Score =  110 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 129/414 (31%), Gaps = 19/414 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           MS   + N   +  N A     +  +NI NA    Y     +              P+ V
Sbjct: 1   MS-NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGV 59

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             VT + +        L++  S  G      S  A               +  I+     
Sbjct: 60  NTVTVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTA--GISTAITGYFTG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + N S+  + +T I NA+ +      + ++   +R   + ++   +S +  + S++
Sbjct: 118 LQNVANNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTSQI 177

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  I   ++     +  +DQRD+ +  +S + G+  + RN++   V+ + G  L   
Sbjct: 178 AQLNQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVA 236

Query: 231 VPRDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                     +    +     S+            +   +++  G +  LL  R   +  
Sbjct: 237 DKSYQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDP 296

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q QL  +A       + ++ +  +    PG  +                          
Sbjct: 297 AQAQLGALATSFAAQVNGQNALGIDLSGKPGGNLFAVANPAVYSNQGNTGNASLSVSFTN 356

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           +      D         + + + A    +        +   +    A  + N  
Sbjct: 357 AAQPTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFSFASGSMNAG 410



 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 62/235 (26%)

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           T +  +       V  +S+      K    A+           +   D  ++ L G  + 
Sbjct: 429 TTSGSAIAAASPVVAAASSTNLGTGKITQGAVSAGYQVPTTPTKLTYDAASKSLSGFQTG 488

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                  +        +       +                 +                 
Sbjct: 489 TTVTIAGTPPTSVTITSPTDSVPYDATAGAKLTITSTTQPAPAGVMNGVTVTLSGAPSDG 548

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           +   +  Y    +   ++   + +    +      TL     N +  +    S       
Sbjct: 549 DSFTIGPYAGGTSDGSNALALSQLVTAKSLGGGTTTLTGAYANYVNAIGNTASQLKSSSA 608

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 609 AQTSLVGQITTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663


>gi|302343058|ref|YP_003807587.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075]
 gi|301639671|gb|ADK84993.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075]
          Length = 452

 Score =  110 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/475 (8%), Positives = 110/475 (23%), Gaps = 27/475 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
             F    +   + SQ    +  N+ N++   Y                        +   
Sbjct: 4   TSFFNGVSGLKSFSQGLNIVADNLANSNTYGYKSSRAEFADVLY---------RELSYTG 54

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L      +GQ   + S + + +    +           +         ++ L     G
Sbjct: 55  SDLTTEIDQVGQGATVWSHQLMNQGAIQETGRTLDLAIDGNGFFTVKNLDTEELYYTRAG 114

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           +  +D             +  +        + E  + NL      +  +           
Sbjct: 115 QFGVDGVVGQEGFIIN-DQGYRLQGFAIGDDGEPIVGNLIDLQIPVENLPGEATTIVGLG 173

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
            + +    + +           ++T +          S  TT+++               
Sbjct: 174 VNLNPADTRVNQ----------VATDIDPEVSGTYNYSSSTTVYDANGDTHQISVYYQRV 223

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                        V  ++        ++        +                  +    
Sbjct: 224 DDYAGTVPEGGQTVWKASTFETQDGEQVA-------NPADPANTFYLHFTDTGALAGVTD 276

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
              A  S +  GL +  G                    Q     S   +      +    
Sbjct: 277 STGATVSADSIGLTMDFGEAGQQAITLDFAPAAGQATTQVAEGYSTSTNTQDGFAEGGLE 336

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              ++    +  +Y +    +     +    +   L     N   +              
Sbjct: 337 SVAVSEDGFVTAYYSNGEMVDVGVVALTTFASPGNLRREGDNLWAYDADAGEIWVGQPTD 396

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +     I +    T  V+   E+  +I  ++++  S+K +  +D+M++T +   
Sbjct: 397 EEFAMGAIEDQSLETSTVDTATEMMNMIIYQRAFQASSKTVTTSDEMIKTAINMK 451


>gi|296283217|ref|ZP_06861215.1| flagellar hook protein FlgE [Citromicrobium bathyomarinum JL354]
          Length = 412

 Score =  110 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/468 (12%), Positives = 117/468 (25%), Gaps = 64/468 (13%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSENKNMFDKV--LHAHSS 72
            A++  NI N +   Y   +              + +     +  + M  K   L A SS
Sbjct: 1   MATVADNITNINTVGYKGAEADFRTLVTDGRLKSSYSAGGVAAAPRAMISKQGLLQAASS 60

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
                     F   +    AD              R   + Y +N     L    +D   
Sbjct: 61  QTDLGIDGGGFFVTRTGSGADSGIA---FTRAGAFRPDEQGYLRNTGGYFLQGWRLDTTG 117

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                          +       +                +N     +  +         
Sbjct: 118 GYTST--------GGVSELEPVRLSGLTGTATATTRLTARINLQSTQEPFTGA-YAAGDM 168

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
               L    S    I       + + +         +T P     E        + +N +
Sbjct: 169 ATGALEPHFSRTFEIFDAQGGGHQVTMG------FVKTGPNQWVSEIYGDPADVTAANGL 222

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
              G V  +  GS        AL                                     
Sbjct: 223 LASGNVAFNPDGSLDLANSSPALF------------------------------------ 246

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
               +  A+        L  G  + +    Q+ S+ + +                ++   
Sbjct: 247 GTLNVSWANQAGSSPINLNLGSQDGLDGLTQFGSSSALIASSTDGGMLNNLVSVEVSKDG 306

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            +   + D  ++     P+A       L     N   +    +S +  +    ++    I
Sbjct: 307 IVSAVFDDGTSRPVFQLPMATFANPDGLSRLPGN--AYTVSQQSGNVAIGRPGELGSGTI 364

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           S        V+L +E + +I+ +++Y+ S+K+I   D MLQ +    +
Sbjct: 365 SAGTLEASNVDLAQEFTNMIRFQRAYSASSKIITTVDDMLQEVSALKR 412


>gi|255030434|ref|ZP_05302385.1| flagellar hook-associated protein FlgK [Listeria monocytogenes
           LO28]
          Length = 435

 Score =  110 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/446 (13%), Positives = 138/446 (30%), Gaps = 42/446 (9%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +                 +      N  P+  +     +  + +KN  +  
Sbjct: 3   LTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQAT 61

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               ++ +        N     ++++      + +  I +L   + +L  +N AI    A
Sbjct: 62  NTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GNA 119

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             +  +D L+QRD LL  ++   GIS     NN  V   + G  L               
Sbjct: 120 GSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS--- 176

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T T+      +DG  ++      +P+G I A +++  + +  +Q +++  +  L  +  
Sbjct: 177 -TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNGLAKALD 229

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------QYRSNPSFLRDGG 355
           +      N        I D ++   N      +    +             +   +    
Sbjct: 230 DIQVKNVNKTMDDLQKINDALQANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTIGGVD 289

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN------------------ 397
                   +          I  +  S  K  +   +     N                  
Sbjct: 290 HPVDTLGTSTYVTDVNDFSIPIFAQSSGKWILNPAITSNADNKPFLGVIAADIASLKTDK 349

Query: 398 ----VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                T   +    I  +  + S S           + ++ES S+  GVN+ EE++ +++
Sbjct: 350 NIQGTTFPSFMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQ 409

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  Y  + K +   + M++ LL  +
Sbjct: 410 YQSYYVANTKAMNTVNDMMKALLAML 435


>gi|188592117|ref|YP_001796715.1| flagellar hook protein flge [Cupriavidus taiwanensis LMG 19424]
 gi|170938491|emb|CAP63478.1| FlgE: Flagellar hook protein [Cupriavidus taiwanensis LMG 19424]
          Length = 414

 Score =  110 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/473 (9%), Positives = 110/473 (23%), Gaps = 60/473 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N A+     I  NI NA+   Y +             +      N     +
Sbjct: 2   GFGQGVSGLNAAASNLDVIGNNIANANTVGYKQSAAQFADVYAGTKIGLGVRVNS--VVQ 59

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
             +  +     + L  +                       + +   +    N+    +  
Sbjct: 60  SFNQGNIEASGRSLDVAITNGNGFFRLTSPEGAVYYSRNGQFQRQEDGRITNMQGLQVTG 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                A               ++   A   I                     +    ++ 
Sbjct: 120 YPAGVAGGAGVQPQPLVISNAQMEPRATSSIT-------------AKFQLDSRATVPTQA 166

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A          +   S  I +   + N   ++ Y +                  +    
Sbjct: 167 FASSAGSPPTSNMFNYSTAINVYDSLGNKQQLMAYFAKVADSAVAPVHPTVAGGTDWQMY 226

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            ++ N   + G  V+    +                                        
Sbjct: 227 VTDVNGNAVGGAPVTLAFDN---------------------------------------- 246

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             AG  ++     +      ++      +   +    Q+ ++    +   +         
Sbjct: 247 --AGALQSPAAGAVTLTQPAVNGAQAMAMKLDLSGTTQFGADNDVKQLSQNGYTSGSLLG 304

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++ G   +  +Y +   K      +A       L     N   W     S    L +  
Sbjct: 305 FSVNGDGTITGNYSNEQTKPLGQIVMAAFGNVEGLKPEGDNV--WSATGSSGQPLLGVAG 362

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  +      V+L  +L  LI  +++Y  + + I   D ++QTL+  
Sbjct: 363 -GSLGTLRSNAVEASNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVNL 414


>gi|157164728|ref|YP_001466716.1| flagellar hook-associated protein FlgK [Campylobacter concisus
           13826]
 gi|157101468|gb|EAT97207.2| flagellar hook-associated protein FlgK [Campylobacter concisus
           13826]
          Length = 623

 Score =  110 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/408 (11%), Positives = 114/408 (27%), Gaps = 16/408 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +        +  N A  Q ++   NI NAD+  Y R+  + + S               V
Sbjct: 4   IFMSLGTGVSGLNAAQVQISTTGNNITNADSNYYTRQRVVQSASPAMNTVPGGVGTGTQV 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T    +       L   SS +      Q            D  +N     I +   +  
Sbjct: 64  DTVTRLHDEFAYSRLKYSSSNLENTGYKQRILQEATKYF-PDLKDNGMVKDIQEYFAAWN 122

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +++ N  E      +I+ A  +  + N S++ +  +    D+ I++ I+ +     ++  
Sbjct: 123 NFASNPDEGAQKVNLINKASVLTASINRSSKMLYDMHTQIDETIKININEINSLGKQIAN 182

Query: 173 VNDAIKFKTASKH-----DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           +N  I+   +        +A+D  D+RD L   +S+++  +    +        +  +  
Sbjct: 183 INKQIQRVESGADAGIKINANDLRDKRDELELAMSKLVNTAVYKSDLKSESRIDTGISDQ 242

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 +I    +       E +    +    +          +I    +I +  +    
Sbjct: 243 GRYYNLNIGGVSIVDGVNFHEISMSSTESGQYTKIYYEREDGRRIPMEEKITNGKIGAAL 302

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +            FS+                     +                    ++
Sbjct: 303 DLRGRNYEPDNDKFSDGIIQKYIDNLNTFSKTLITSTNNVYAESAVEISNSDPISYLEND 362

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            + +    S+       +        +     +      + D   G +
Sbjct: 363 KTLMNHDNSIRNGSFEAIVYDNKGNVVAKKTIEINGTTTMNDTKYGNS 410



 Score = 93.2 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 91/290 (31%), Gaps = 5/290 (1%)

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR----DINFEKMNSYTVTSESNP 251
            L+   + +   S +  +N+D + Y  +  TL                 ++         
Sbjct: 334 TLITSTNNVYAESAVEISNSDPISYLENDKTLMNHDNSIRNGSFEAIVYDNKGNVVAKKT 393

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
           I I+G    ++        +        ++   +  +  D          +         
Sbjct: 394 IEINGTTTMNDTKYGNSVVQDFNSNSDDNNDNNMLNDVDDFFEASYFYDKNTHQGTFALI 453

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                   +  I D        +      +    +     ++      K     K + G 
Sbjct: 454 PKQAQGLYSISIVDHGTNFPGVVGINRFFSGTNSNTIGINQNFTQDHTKLRAYSKPVVGN 513

Query: 372 PDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
            ++ N       +   F      ++ + T+  Y R     +  +   ++ +H  +  +  
Sbjct: 514 NEVANKMIQLQYQKQTFYSSGTALDRDETIEGYYRYFTTDMASDTEANNTIHDTNTSLQR 573

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              E + +T GV+  EEL+ LI+ + SY  + K+I   D+ML TLL   +
Sbjct: 574 TAEEEFQSTSGVDTNEELTNLIRFQASYGAAAKIITTVDQMLDTLLSLKQ 623


>gi|254504553|ref|ZP_05116704.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii
           DFL-11]
 gi|222440624|gb|EEE47303.1| flagellar hook-associated protein FlgK [Labrenzia alexandrii
           DFL-11]
          Length = 631

 Score =  110 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 131/413 (31%), Gaps = 16/413 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54
           M L +  N A    +   +Q      NI NAD   Y ++            +   +    
Sbjct: 1   MGLTSALNTAVFGISFNQRQIDVTASNIANADTAGYSKKTVSANAYFDGDGNVAGIVTNE 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                            +     + + +F    + +       +S +    +L  +L S 
Sbjct: 61  ISRIINEEIQSDYFNSLADTNYGKQIAAFTDRLDDIFGTIGDQSSLSALAGELTGALSSL 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
                     + V+  A+ + +  NTS +++  +R +AD+ +  +   +   LS +  ++
Sbjct: 121 VNQPGNYAAQQEVVAAADAMARELNTSYQQIADLRQEADEALARQTETVNSLLSNIESID 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            AI+  T +   + +  D+RD L++++S  + ++      N + + T +G  LF      
Sbjct: 181 AAIRDATQAGVSSSEMEDERDRLVEQLSGYLDLNVSKTTTNTLFIQTKNGQPLFSDGEAA 240

Query: 235 INF----------EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                        ++ N+   T+     F      +S +      G + A +++RD V+ 
Sbjct: 241 TLAFQSTNRLGADQQGNAIVATTAGGAQFDIVPAGASGRDRTTGTGLMVATMELRDDVLI 300

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             Q QLD +A  L  +FS     +  +   P       +  L +     +  T       
Sbjct: 301 EAQKQLDTIAAELSLAFSNVTQASTAATVGPDTGFDLPVSGLQSGNTINLEYTDSAGQSQ 360

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                 + D   +                +                  G    
Sbjct: 361 TITLMAVSDPTLLPLANTATTNPNDTVVGIDISSGTPATYITNIIAALGTAAP 413



 Score = 87.8 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/446 (11%), Positives = 132/446 (29%), Gaps = 10/446 (2%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM--MSADDHYNNSPTH 102
            +   V+      E   + +++       + +      F   K    + +D         
Sbjct: 186 ATQAGVSSSEMEDERDRLVEQLSGYLDLNVSKTTTNTLFIQTKNGQPLFSDGEAATLAFQ 245

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
             ++L    +  +   +     +  I  A    ++  T    +       D  +      
Sbjct: 246 STNRLGADQQGNAIVATTAGGAQFDIVPAGASGRDRTTGTGLMVATMELRDDVLIEAQKQ 305

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           L    +EL++    +   + +     D      V   +    I +           +   
Sbjct: 306 LDTIAAELSLAFSNVTQASTAATVGPDTGFDLPVSGLQSGNTINLEYTDSAGQSQTITLM 365

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV-------SSNQGSAVPKGKIKAL 275
             +        +      N   V  + +       +        ++     V       L
Sbjct: 366 AVSDPTLLPLANTATTNPNDTVVGIDISSGTPATYITNIIAALGTAAPDLQVSNDGSDNL 425

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
             + DS        ++ ++  +  S +    +  +                +N   +   
Sbjct: 426 RILGDSTTVPNATTVESLSANITPSATTDQGLGLSIFVDQRNGTETFTDAPENGGQRVGY 485

Query: 336 ET-ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              I VNP   ++ S L D  +       N    A Y         ++         +  
Sbjct: 486 ANGISVNPALLADSSLLVDYQTTPAANSENDPARAQYLLNALTNETAYFDPEAGMGSSSS 545

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
               T+L+Y   ++ +     +D+       + +  +++  Y  +  VNL  E++FL+++
Sbjct: 546 PFQGTVLDYINQTVAYQGNQAADAKTYSDSKEALTLNLAVRYEESYSVNLDAEMAFLVQL 605

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           E +Y+ + +++   + ++Q LL  V+
Sbjct: 606 ENAYSANARVMQTINDLMQELLNVVR 631


>gi|291532057|emb|CBK97642.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3]
          Length = 503

 Score =  110 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/505 (8%), Positives = 115/505 (22%), Gaps = 47/505 (9%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISP--------------ENVTVVTQRSENKNMFDKV 66
              I  NI N +   +    T                      V         K      
Sbjct: 1   MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           +   S       +     +        D   N                  + + +++   
Sbjct: 61  VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGNMVLGV 120

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SK 184
             D       +   +    + +  +A     +        L+            +   + 
Sbjct: 121 SGDATGVDASSNRITFVVPEVLDNEASYSKTITYKGSTYPLTVSADTATPDGNISVGFTV 180

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI----NFEKM 240
            ++       + L+ +++E    + +    + +     +G    + V             
Sbjct: 181 GNSDYAYMSGNKLVVQLNEKNDYTNLTDLEDAVTRACENGGVSIDGVLPLHFELDTVPPA 240

Query: 241 NSYTVTSESNPIFIDGVVVSSNQG------------------------SAVPKGKIKALL 276
                T+ +N + +D     ++                              K     L 
Sbjct: 241 ADIPATTATNTMKLDDGTTKASLTFTTVNAGEYANNYTINLRYSKNAADTTAKWSDNGLT 300

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                   +   Q             +    + + +   G        D    L  G + 
Sbjct: 301 ISVCPGATVADIQTAVDKAAGSNEKYQLKVTSTDWDAANGSLETLLATDGKVGLAGGSNN 360

Query: 337 TICVNPQYRSNPSFLRDG-GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                 +   N         +       +   +     +   +            +   +
Sbjct: 361 FYSDMVELLGNIKMTDGRVAATQTVKDLDSVYINEDGTIYGIHSVHGIIMLGRIDIVTFD 420

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L +   +   W E   S    +++  +     +         V+L +E S +I  +
Sbjct: 421 NPNGLEQVGSSY--WRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQ 478

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  ++++I  +D ML+ ++   +
Sbjct: 479 RGFQANSRIITTSDTMLEEIVNLKR 503


>gi|83718065|ref|YP_438389.1| flagellar hook protein flgE [Burkholderia thailandensis E264]
 gi|167614837|ref|ZP_02383472.1| flagellar hook protein flgE [Burkholderia thailandensis Bt4]
 gi|257141422|ref|ZP_05589684.1| flagellar hook protein flgE [Burkholderia thailandensis E264]
 gi|83651890|gb|ABC35954.1| flagellar hook protein flgE [Burkholderia thailandensis E264]
          Length = 395

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/474 (8%), Positives = 102/474 (21%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N  + Q  +I  NI NA+   +                             
Sbjct: 2   SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMV------------------ 43

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                    G Q       ++ + +     +  +       +  +    +K+    +L  
Sbjct: 44  --------AGTQANGTYIGSITQSVGTRGGFLPTGRALDGAIDGNGFFVTKDSDGSMLFT 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  +             +         ++ +            +            
Sbjct: 96  RFGYFQRDADGYIVDGFGRRAQGYGTGGAYGDIRVPTDTEPAKASDSLEYVGNLSADWDA 155

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             +   D+ D      S    +   +   + +  Y   G                   T 
Sbjct: 156 PKNPTFDKDDDTSFNHSVASTVYDSLGRQHIVTQYFVKGQP------------PSTDVTT 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +   + G             G++ A     D  +                      
Sbjct: 204 YYAMDGEIVGGSTPVQTVLQFDTNGQLTAPNSPVDLDLGT-------------------- 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I        Q     +   +  +     +   
Sbjct: 244 --------------------PAGASALAIKVNYAGTTQVAGETTTTVNRDNGYAAGVPGE 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     ++  Y +   +      +A       L         W     S +  +    
Sbjct: 284 VTLDEDGGVVVQYSNGKQRKVGSLALATFANQDGLTAVGD--TAWRASAASGNPLIGSAG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +          ++ +EL  ++  +++Y  ++K++   ++M+Q L++ +
Sbjct: 342 SGALGKVVAGSLELSNADVTKELVDMMSAQRNYQANSKVLSTENQMMQALMQAL 395


>gi|238785497|ref|ZP_04629480.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970]
 gi|238713599|gb|EEQ05628.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970]
          Length = 419

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 105/476 (22%), Gaps = 62/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +                          ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      +  +        F  +++                 + +   +    N+    
Sbjct: 62  NDGTATTTNRRLDLAISQNGFFRMQD------SSGGIFYARNGQFKLDADRNIINMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                    I      +      +      T 
Sbjct: 116 LTGYPA-------------------------TGTPPTIQQGANPIPLSIPQDMISAKATT 150

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S     +     D++    +            N+M  + + G      V      E   +
Sbjct: 151 SGSMVANLTSTHDIVPATPAFDPDKPATYSFVNNMTTFDTLGNRHEINVFYVKRTESSTA 210

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                            ++    ++      AL  + +   P                  
Sbjct: 211 GNSWDVYTRDSSANPAQTAALRGSMQFDTNGALSTVTNGANPASTTDFTL---------- 260

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                   Q     S +    +      
Sbjct: 261 ----------------TIPMGVVNGATAAPFTLSVAGTKQQNTGTDSIVSQNQTGYAAGE 304

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +    +     ++  Y +S  +      +A       L     N   W E   S +  L 
Sbjct: 305 FTGFQINNDGSVVGTYSNSQTQLLGQIVMANFANPEGLSSEGDNV--WKETLASGNPMLG 362

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++     +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 363 TAGGGGFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVNL 418


>gi|222147375|ref|YP_002548332.1| flagellar hook protein FlgE [Agrobacterium vitis S4]
 gi|221734365|gb|ACM35328.1| flagellar hook protein [Agrobacterium vitis S4]
          Length = 411

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/480 (11%), Positives = 108/480 (22%), Gaps = 69/480 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N + +     S +  SI  NI N     Y   +T  +      T  T      
Sbjct: 1   MSLASAMNSSVSGLTAQSNKLTSIGDNISNTSTTGYKGTETAFSSLVNGGTTSTT--TQT 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 L + SS          +  +++         +             + Y  N S 
Sbjct: 59  VSQSGDLESTSSETDLAIDGDGYFVVQD------DEGDVFLTRQGDFEIDEDGYLVNSSG 112

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L     DN E           E  KI              +   L     V       
Sbjct: 113 YTLLGYSYDNGEPASVINGFDGLEPVKIDTSEVTASATTTGEVSGNLESDEEVVSGDTPS 172

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + S                                            ++       ++  
Sbjct: 173 SNSADATFTA-------------------------------KSSIVTYDEQGASTQYDIY 201

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T   E           + +                                  L  +
Sbjct: 202 FTKTDDDEWEVSIYRNDEANDDDDGT----------------------SFPYDNGELGST 239

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               D      +           +            T        +  + +    + S  
Sbjct: 240 TLTFDSAGELEDGSTSTLSFTDSETGLTIDLDFSDITQT------ATSTSIEGSANGSAA 293

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +   +     +     D    +     +A + +   L E       +     S +  
Sbjct: 294 SSSSDYTIGSDGVISTVSSDGTTTDTYKIALATVASPDNLEEVGG--TAYKVDADSGTVV 351

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +       F  I  S   +  V+L  ELS +I  +++Y+ ++K+      ML T++  V+
Sbjct: 352 VGFAGTGSFGTIESSTLESSNVDLASELSDMIAAQRAYSANSKVFQTAADMLDTVINMVR 411


>gi|218689029|ref|YP_002397241.1| flagellar hook protein FlgE [Escherichia coli ED1a]
 gi|218426593|emb|CAR07421.1| flagellar hook protein [Escherichia coli ED1a]
          Length = 401

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTLDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T    +  +F    V++SN  + +  G I                              
Sbjct: 220 GTANPATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|160939658|ref|ZP_02087006.1| hypothetical protein CLOBOL_04550 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437449|gb|EDP15213.1| hypothetical protein CLOBOL_04550 [Clostridium bolteae ATCC
           BAA-613]
          Length = 550

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/550 (7%), Positives = 109/550 (19%), Gaps = 83/550 (15%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------NVTVVTQRSENK 60
                 +   I  NI N +   +                           T  +Q     
Sbjct: 1   MQAHQTKLDVIGNNIANVNTYGFKSSRARFQDVYYQTLQSATGGDNNKGGTNASQVGYGA 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLE-SYSKNL 118
            +    L+   SA+             E        + +        L+         + 
Sbjct: 61  QLAGVDLNMGRSALQSTGRPMDVAITGEGFFQVMDSDGNIFYTRAGNLQLDNNSGNLVDA 120

Query: 119 SEDILGKTVIDNAEEVVQNFN-----TSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           +   +     D   +                 Q   +     IE  I++     +    +
Sbjct: 121 NGYTVLGVTGDPLGKAAGADKIHLSIPGKNNAQSANSQTINGIEYTITSQNTTSAANVTI 180

Query: 174 NDAIKFKTASKHD----AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +        D    + +  D    +    + I    +   +  +  +  ++      
Sbjct: 181 SFRLDDTLPDGADIVVKSGELKDSSITVSVNKNAIFTSLSDFNSKMNAAITRANNGKAHP 240

Query: 230 TVPRDINFEKMNSYTVTS--------------ESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                I     +    TS                   F D   +       +        
Sbjct: 241 AGDFTITAVPADKIFKTSLTGEELLGENFGIKAGVQKFTDAADIKDGIFGGLKPSSTSTE 300

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
            +   S    ++  L         ++  K  +  +  +                      
Sbjct: 301 PKFTASGKVSYEMTLQAATDTEPAAWIIKATVESDDGSKRYFTGKVSENSTSANSVWLKE 360

Query: 336 ETICVNPQYRSNPSFLRDGGSVS--------KKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +              L+  G  +                ++       N           
Sbjct: 361 DGTTPLNDQPGQYIELKHPGYAAINDACKDLATGDLTKTDVGTITAATNSNDLGLKSKNF 420

Query: 388 FDPVAGINTNVTLLEYARNSIGW------------------------------------- 410
                    +V L       +                                       
Sbjct: 421 TLTNGSEGGDVALSGVGVTILSNGIIEATHPDLGKIQIGRIDLVTFDNPYGLEGVGNSYF 480

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S    L    +     +  S      V++  E + +I  ++ +  ++++I  +D 
Sbjct: 481 KTTANSGDPKLCQAGENGTGALKTSSLEMSNVDISTEFADMIVTQRGFQANSRIITVSDS 540

Query: 471 MLQTLLEGVK 480
           +L+ L+   +
Sbjct: 541 ILEELVNLKR 550


>gi|83747648|ref|ZP_00944684.1| FlgK [Ralstonia solanacearum UW551]
 gi|207739731|ref|YP_002258124.1| flagellar hook-associated protein 1 [Ralstonia solanacearum
           IPO1609]
 gi|83725700|gb|EAP72842.1| FlgK [Ralstonia solanacearum UW551]
 gi|206593113|emb|CAQ60019.1| flagellar hook-associated protein 1 [Ralstonia solanacearum
           IPO1609]
          Length = 642

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 130/407 (31%), Gaps = 15/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N A      A         NI NA    Y R++ + T +           + V V 
Sbjct: 3   SSLLNIAATGLRAADVNLQVTGNNIANASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  +A       Q       + S     N+     ++   ++ +S
Sbjct: 63  TVKRIYDQFLTAQVQSGQAATSAAD--QLSSLASSLDSYLSDSNSGLGTALTGFFNAADS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  +  A  +   FN    ++  +    + +++ +++++     ++  +
Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAIGGQLASLSNQVNTQVQTQVNSVNSTAQQIAAL 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ND I    A+     A+D  DQRD L+Q +++ I  S +  ++    VY  +G  L +  
Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    + Y  T  S         VS +  S +  G +  L+Q R + +   QN + 
Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNTLIPAQNSVG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    + ++    +     G  +                          +N    
Sbjct: 300 RLAAAITADVNTQNKEGMDLNGKLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQG 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V +       +         + +   + G   + 
Sbjct: 360 NDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSG 406



 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +         R +   +   +  +  +++ Q    Q    +    +      +
Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNVYVGNGQALVQGSQS 242

Query: 99  SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                ++       L    K+ +  +           +          +   +    +  
Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNTLIPAQNSVGRLA 302

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +++     E   +N  +     S           +     ++  I  +   + N+ 
Sbjct: 303 AAITADVNTQNKEGMDLNGKLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQGNDY 362

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261
            V Y+    T+             +  T                         +      
Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSGDSFLVRPTANAASTMQ 422

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              +        + + +           +  +      + +        + +   L    
Sbjct: 423 TLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSAINLTYSGGSLSGFP 482

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   +                Q  +                 +   ++          ++
Sbjct: 483 GSVTVTANGTSTTYTGTAPYTQGATYSFNGIQMSLSGTPATNDTFTVSANTANSTDGHNA 542

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + +     N   ++     N +  +    S +       + +    +    +  G
Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQSSQASANLTSQKSLLASSTAQQQSVSG 602

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL +E   L+K +Q+Y  + K++   + +  +LL  
Sbjct: 603 VNLDDEAMSLMKYQQAYQAAAKVMQTANSLFDSLLSI 639


>gi|332187911|ref|ZP_08389644.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17]
 gi|332012072|gb|EGI54144.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17]
          Length = 430

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/483 (10%), Positives = 119/483 (24%), Gaps = 66/483 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTVVTQ 55
            F  + +    +    + I  N+ N     + +                   +  +    
Sbjct: 2   SFYTSLSGLQASQTDMSVISHNLANVGTNGFKKSRAEFADVMAANFSTDPFKQVGSGTVV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           ++  +   +    + S+A+        F  ++    A               +    +Y 
Sbjct: 62  KANRQEFKEGNYTSTSNALDLAISGDGFFTVQ----AGGTTGTLNYTRNGSFQVDTNNYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +   + L    +D    V    N     +Q            +++              
Sbjct: 118 TDTQGNRLQVFPVDKDGNVTSFGNDGLTSLQLPPTSGTPVATKKVTLDINL--------- 168

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                +++        D+ ++     +    I     N   +  Y      + + +P D 
Sbjct: 169 -----SSTATAPTGAFDRTNMGTYNNTTQTKIFDTSGNAMTLTNYY-----VRKPLPVDA 218

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N   +     +S        G                               +Q      
Sbjct: 219 NGNAVQPADGSSTWLVYSYVG-------------------------------DQQMTTNG 247

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                       AGN          D      + + Q ++     + Q  S  S      
Sbjct: 248 GSTAPVEMTFNAAGNMTTPAAPVAFDNFTPRTSVISQPLTVDYRGSSQSGSIFSVNSRTQ 307

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                 L +  ++     +   + +          VA       L +   +   W     
Sbjct: 308 DGKAVGLLSGVSVGEDGLITASFSNGETAALGKVAVATFVNMPGLRQEGNSY--WEATGM 365

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +      ++  +  I  S      V++ EEL  LI  ++++  + K +  + ++ QT+
Sbjct: 366 SGAAKFGTANEGAYGAIRSSTIEGSNVDITEELVNLIAAQRNFQANAKALDTSSQISQTI 425

Query: 476 LEG 478
              
Sbjct: 426 FNI 428


>gi|301023263|ref|ZP_07187060.1| flagellar hook protein FlgE [Escherichia coli MS 69-1]
 gi|300397108|gb|EFJ80646.1| flagellar hook protein FlgE [Escherichia coli MS 69-1]
          Length = 401

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 107/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                              +N          T+F++     +      
Sbjct: 166 SVKA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +     A+                      L   A  ++ S  
Sbjct: 202 KTGDNNWQVYTQDSSDPTGTADHAMT---------------------LVFNANGVLTSNP 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            ++   G                            +    Q     + +    +  K   
Sbjct: 241 TENITTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|254559637|ref|YP_003066732.1| flagellar hook protein flgE [Methylobacterium extorquens DM4]
 gi|254266915|emb|CAX22714.1| putative Flagellar hook protein flgE [Methylobacterium extorquens
           DM4]
          Length = 460

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 121/491 (24%), Gaps = 42/491 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +    A +     S   ++I  NI N+    Y R DT       +    +Q + + 
Sbjct: 1   MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60

Query: 61  NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109
                          +   +       Q F A+     +    +     +          
Sbjct: 61  GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L    +D                  I A     I    +  +   + 
Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +    +   DA        V     +    +S     +           T++ 
Sbjct: 181 NAASTQGLLSAFSDGTDAR-------VTPANGATTGSVSQTNAQSFIDNSIAGPALTVYT 233

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++ +   +    +++     D   + +   ++V                    NQ
Sbjct: 234 ASGAPVSVQSRWAKVAAADTGAGTSDTWNLFTADKTSVNG------------------NQ 275

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                     +FS    +   +     +            +   +S  +          +
Sbjct: 276 ASWTNIGQAFTFSPSGQMTAPTGKTVPISNLTVDGVNVGAVTLDLSGGLTQYAAASGTVT 335

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +       N   +     +   Y +          VA       L     +   
Sbjct: 336 TNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVDVAQFVNPDGLKP--DSLGN 393

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + +   S    + +K   V      +       ++  E S +I  +Q+Y+ + +++    
Sbjct: 394 YQQTVASGEPIVGLKDSTVVG----ANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQ 449

Query: 470 KMLQTLLEGVK 480
            M+  LL  ++
Sbjct: 450 TMISDLLNVIR 460


>gi|289606849|emb|CBI60984.1| unnamed protein product [Sordaria macrospora]
          Length = 336

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 93/292 (31%), Gaps = 16/292 (5%)

Query: 1   MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPE 48
           MS   +  + +   +          +   NI NA    YVRR T             +  
Sbjct: 35  MSEERMSDLLSIGASGVRAYQSALTTTSDNIANAGTTGYVRRTTSLAEVGVGSSRQITGS 94

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            VTV            + +   +S + +      + A  E        + + T  ++   
Sbjct: 95  GVTVTGVARSADIYRSQEVRQSNSDVSRSDGGIVWMARIEDAL----TSRALTDRMTAFF 150

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +S  + S + S D   +++++ AE V Q F+ +   + +  A+     +  +S L    +
Sbjct: 151 NSATTLSADPSADAPRRSMLEAAESVAQAFSGTIGALDETAANLALNADNAVSKLSNNAA 210

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  +ND +   +         LDQRD +L ++SE+  I         + V         
Sbjct: 211 VLARINDGLSRVSKGSAGEAQLLDQRDRMLDEMSEMTDIDVNFDTTGRVTVRAGGADGPL 270

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                + +  +       +        G             G +    +I D
Sbjct: 271 LVHGIEASTVRFERDEDGAPVFTTMRGGTETILIPRGGSLAGMVDGAKRISD 322


>gi|82702453|ref|YP_412019.1| flagellar hook protein FlgE [Nitrosospira multiformis ATCC 25196]
 gi|82410518|gb|ABB74627.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 406

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/484 (10%), Positives = 109/484 (22%), Gaps = 89/484 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55
            F +  +  N AS+    I  N+ N +   + +          N             V  
Sbjct: 2   SFQQGLSGLNAASKNLDVIGNNVANTNTVGFKQSQAQFADMFANSLSGGGGTQAGIGVKL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +      +   ++          F  L +                 +     + Y 
Sbjct: 62  AGIAQQFSQGSITVSNNPFDIAISGAGFYRLSD-------QGTISYSRNGQFHPDKDGYI 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N S   L   + ++  ++     T       +R        +  + +   +        
Sbjct: 115 VNSSGLRLTGYMANSTGQINTGTPT------DLRLSTADLPPVTTTRVNALV-------- 160

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                          LD R   L   +  +       ++  + VY S G +   +     
Sbjct: 161 --------------NLDSRGAPLSAAAFDLMDPATYHSSTSLSVYDSLGNSTPLSTYFVK 206

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                      +  + +      +S    + +  G +  L     +V             
Sbjct: 207 TAANSWDVFAANNGSLL---NGGLSIGTLNFLSNGSLDPLSSSSFNVTAPV--------- 254

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                                                          Q+ SN        
Sbjct: 255 ------------------------------TTGASPLAFDIDFANTTQFGSNFGINALSQ 284

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     +   Y +    +     +A       L     N   W E   
Sbjct: 285 DGYASGQLTGFSIGEDGIVSGSYSNGKFLSMGQIALANFANPQGLQAVGNN--TWKESAA 342

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +   +      +         V L  EL  +I  ++ Y  + + I   D++LQT+
Sbjct: 343 SGAALVAAPATGGLGVLQAGAVEDSNVELTSELVNMITAQRVYQANAQTIKTQDQILQTV 402

Query: 476 LEGV 479
           +   
Sbjct: 403 VNLK 406


>gi|91204389|emb|CAJ70889.1| similar to flagellar hook protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 532

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/537 (10%), Positives = 123/537 (22%), Gaps = 62/537 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L            +       I  N+ N +   Y     + +            +  +
Sbjct: 1   MGLGGALYAGVTGIRSHQSWLDVIGNNLSNINTYGYKSSRLLFSDLISQDKGSGGVNPMQ 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQ-----SFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 + + SS   Q  L        F    +     +  N +    +        +  
Sbjct: 61  IGMGVKVGSISSLFSQGTLEATNNEFDFAIQGDGFFVLNGGNKNFFSRVGTFATDASNQL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +              +    + SA +   +      E     S+    +    + + 
Sbjct: 121 VDSTTGYQILDSSGKTITIPYGSSVSATKTSTMTLTGTLESTPSSSSGEVLILSSALTSS 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-----DGTTLFET 230
           ++    A+     + LD         ++II IS    +     V  +     DGTT+ + 
Sbjct: 181 SVA---ATGATTLNALDTNTTDYTSGTDIITISYTEPDGTSGSVDFTYGAANDGTTVDDL 237

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           +         ++     + +              S        +L     S         
Sbjct: 238 LAYINTNAFGDTTGTAGDGSAFATLSSSGKIIVTSTTAGEDELSLSISDSSTATGTWTNY 297

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP-------- 342
              A     S +  D               +  +            TI  +         
Sbjct: 298 SLKASTYTTSTTIYDSQGTGHNVTLSFIKKNDGEWDMRASMPSADGTITTDTISAITFND 357

Query: 343 ---------------------------------------QYRSNPSFLRDGGSVSKKFLW 363
                                                  Q     S        S+   +
Sbjct: 358 DGSLKSSGDTTLTFKFDGITTSQTVKFKLGTFGKTDGIYQSGKGSSVTASEQDGSESGSF 417

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           +  ++     +   Y +  +       +A       L     N       + S       
Sbjct: 418 SSFSVDTDGTMYALYSNGTSSKIAQLQLATFGNVQGLRRSGDNLYEQ--TDSSGEPLYTT 475

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   I   Y     V++  EL+ LI  ++ + +++++I   D++L   +   +
Sbjct: 476 GGTGSAGDIYNGYLEASNVDMTSELTSLIMAQRGFQLNSRVISTADEVLAEAVNLKR 532


>gi|167576662|ref|ZP_02369536.1| flagellar hook protein flgE [Burkholderia thailandensis TXDOH]
          Length = 395

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/474 (8%), Positives = 105/474 (22%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N  + Q  +I  NI N++   +                             
Sbjct: 2   SFNIALSGINAINSQLNTISHNIANSNTYGFKAGRANF---------------------- 39

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +   G Q       +  + +     +  +       +  +    +K+     L  
Sbjct: 40  ----ATMVAGTQANGTYIGSTTQSVGTRGGFLPTGRALDGAIDGNGFFVTKDSDGSTLFT 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            V     +         R   +    +    ++ +            +            
Sbjct: 96  RVGYFKRDADGYIVDGFRRRAQGYGASGAYGDIRVPTDTEPAKASDSLEYVGNLSADWDA 155

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             +   D+ D      S    +   +   + +  Y   G                   T 
Sbjct: 156 PKNPTFDKDDDTSFNHSVASTVYDSLGRQHIVTQYFVKGQP------------PSTDVTT 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +   + G             G++ A     D  +                      
Sbjct: 204 YYAMDGEIVGGSTPVQTVLQFDTNGQLTAPNSPVDLDLGT-------------------- 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I        Q    P+   +  +     +   
Sbjct: 244 --------------------PAGASALAIKVNYAGTTQVAGEPTTTVNRDNGYAAGVPGE 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     ++  Y +   +      +A       L         W     S +  +    
Sbjct: 284 VTLDEDGGVVVQYSNGKQRKVGSLALATFANQDGLTAVGD--TAWRASAASGNPLIGSAG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +          ++ +EL  ++  +++Y  ++K++   ++M+Q L++ +
Sbjct: 342 SGALGKVVAGSLELSNADVTKELVDMMSAQRNYQANSKVLSTENQMMQALMQAL 395


>gi|15606898|ref|NP_214279.1| flagellar hook protein FlgE [Aquifex aeolicus VF5]
 gi|6225343|sp|O67711|FLGE_AQUAE RecName: Full=Flagellar hook protein flgE
 gi|2984140|gb|AAC07675.1| flagellar hook protein FlgE [Aquifex aeolicus VF5]
          Length = 482

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/489 (10%), Positives = 130/489 (26%), Gaps = 44/489 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53
           +L  F  A    + +         N+ NA+   + +   +       V V          
Sbjct: 1   MLRSFYNAITGMDVSRFALDVTSDNLANANTVGFKKSRPIFQDMVSQVVVGLNTTTGTVK 60

Query: 54  --------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                      S  K                    ++   L++++      N +      
Sbjct: 61  TTTFGAGAVVDSTQKVWTIGSFKQTEITTDLAIEGKALFILRDVL-----TNQTYYTRDG 115

Query: 106 KLRDSLESYSKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           + R + E Y  N +   +    ++    E           E Q       +      +NL
Sbjct: 116 RFRINREGYLINPNGLYVQGFKVNPVTGEVTGTQLEDIRVETQIPPKATGEIYFNPPTNL 175

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI-SEIIGISTIVRNNNDMVVYTS 222
                 +           +  ++    L   D L +++ ++I  + T         + + 
Sbjct: 176 DERAPIIDQTTTPFNPLDSFTYNYRYTLTIYDSLGREVPADIYFVKTGTNQWKVYFLASL 235

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV----VVSSNQGSAVPKGKIKALLQI 278
               +      D +   +    + ++   I  +G        +++         K +   
Sbjct: 236 KERYINVDWNGDDDKTDIVFLDLFNDQVHIADNGTFSTLPTFASKTLEFDPSTGKLVYIP 295

Query: 279 RDSVVPIFQNQLDEMARVL--------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
              +V    NQ   +   L        I   ++ +          G         +   +
Sbjct: 296 GGDIVQDTANQKFYLEVDLTPESGPSEINDPNDTESYLNKLGAKLGSETNKIKIYVGEGI 355

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
            Q          Q+ ++     D    ++  L ++  L+    ++  Y +          
Sbjct: 356 LQNNVIQNSYITQHAADFVVTMDQDGYARGELIDLYVLSEDGVVVGVYSNGETLPTYRLA 415

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A       L++   N    ++        + +      N I  +      V++ +E   
Sbjct: 416 LAQFTDPEELVKKGSNLYASVKT-----PTILLPGGS--NKIRSAVVEMSNVDIAKEFIN 468

Query: 451 LIKVEQSYN 459
           LI  +++Y 
Sbjct: 469 LITAQRTYQ 477


>gi|86747894|ref|YP_484390.1| flagellar hook-associated protein [Rhodopseudomonas palustris HaA2]
 gi|86570922|gb|ABD05479.1| Flagellar hook-associated protein [Rhodopseudomonas palustris HaA2]
          Length = 588

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 151/422 (35%), Gaps = 16/422 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL    + A      +  Q +    N+ NAD   Y  +      +        V++   
Sbjct: 1   MSLDIARSIAVGSLMASQVQISVASSNVSNADTTGYSVKTANQVATTSGGAGTGVSITGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYISKLRDSL 111
            S    +  K + A +S +G   +  ++    + +            S  + ++ L  ++
Sbjct: 61  TSSVDKLLMKSVIAATSELGAAEIDDTYLDRLQALYGSTSGANDTGTSLANTLASLESAV 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            S +   S   L   V+   +++      ++  +Q +RADAD EI  ++  +   L  + 
Sbjct: 121 TSLAGTPSSASLQANVVSALDDLASQLRETSSGIQSLRADADAEIAADVDEVNTALKTID 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +ND IK   AS +   D  DQR+V LQ ++  + IS  V ++ DM VYTS G  L ++ 
Sbjct: 181 DLNDQIKQAAASGNSTADLEDQRNVALQTVAGKMNISYFVSSSGDMQVYTSGGQALVDSS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVS---SNQGSAVPKGKIKALLQIRDSVVPIFQN 288
              ++F   +S   +S  +        ++    +  S +  G+I AL  +RD+ +P  Q 
Sbjct: 241 AHLLSFTAASSVKASSTYDGTSSGLSGITLNGVDVTSQISSGEIGALFDLRDTELPAAQA 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QLD++A  L  S +       +                        +  I        + 
Sbjct: 301 QLDQLATTLADSLNTASNAGTSLPPPA----TLTGTTAVTSSTALSATGIVRIAVADQSG 356

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + +  G      +      + G   +        +   +     G    V + E      
Sbjct: 357 NLVSYGDLDLSSYATVGDLVDGINAISGLSAAIDSSGKLVISATGSGNGVAINEMTGAVG 416

Query: 409 GW 410
             
Sbjct: 417 AD 418



 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/417 (11%), Positives = 123/417 (29%), Gaps = 19/417 (4%)

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS-EDILGKTVIDNAEEVVQ 136
             L++ + L + +       NS      +   +L++ +  ++    +  +          
Sbjct: 174 TALKTIDDLNDQIKQAAASGNSTADLEDQRNVALQTVAGKMNISYFVSSSGDMQVYTSGG 233

Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
                +         A         +          +N        S  +     D RD 
Sbjct: 234 QALVDSSAHLLSFTAASSVKASSTYDGTSSGLSGITLNGVDVTSQISSGEIGALFDLRDT 293

Query: 197 LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256
            L      +        ++      +       ++P         + T ++  +   I  
Sbjct: 294 ELPAAQAQLDQLATTLADSLNTASNAG-----TSLPPPATLTGTTAVTSSTALSATGIVR 348

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
           + V+   G+ V  G +          +    N +  ++  +  S        G+   V  
Sbjct: 349 IAVADQSGNLVSYGDLDLSSYATVGDLVDGINAISGLSAAIDSSGKLVISATGSGNGVAI 408

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNP------------SFLRDGGSVSKKFLWN 364
             +   +      L         V     SN               +      +     +
Sbjct: 409 NEMTGAVGADGAGLSDYFGLNDLVTGTGASNFAVRSDILANSGLFQVTTLDDSATLTTGS 468

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKNRSDSHDLHM 423
               AG  D+++    +  ++  F    G+ +   +  +YA + +  +    + +   + 
Sbjct: 469 KVLTAGSSDVVDGLYSALTESRSFGASGGLGSTTGSFADYAADIVSNVASKATSAATTYT 528

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 + ++ + ++  GVNL EE + +  ++  Y  +++LI   ++M  +L+  V+
Sbjct: 529 AKSTTQSSLANALTSQSGVNLDEETAKISSLQNQYTAASQLIQVINEMFSSLMTAVQ 585


>gi|283833630|ref|ZP_06353371.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220]
 gi|291071313|gb|EFE09422.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220]
          Length = 411

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/474 (9%), Positives = 103/474 (21%), Gaps = 66/474 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGAASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              + + R   + +                         T    
Sbjct: 97  NGQFK--------------LDENRNIVNMQGLQLTGYPATGTPPTVQQGANPAPITIPNT 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                      +   ++    +                        P    F+  ++ T 
Sbjct: 143 LMAAKSTTTASMQINLNSTDKV------------------------PAKTPFDPSDADTY 178

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
             +      D    + +      K       ++                     +     
Sbjct: 179 NKKGTVTVFDSQGNAHDMNIFYVKNAQSNTWEVHTQDASTGDPAQSAGFMRFNENGVFLG 238

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLC-QGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             A  +    G  I      ++           +    Q     + +    +  K     
Sbjct: 239 ISATATGAPAGTDIQITTGQINGADAADFSLSFLNSMQQNTGANNIVATNQNGYKPGDLV 298

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              +     ++ +Y +   +      +A    N  L     N   W     S    L   
Sbjct: 299 SYQINNDGTVVGNYSNEQKQVLGQIVLANFANNEGLASQGDNV--WAATQSSGVALLGTA 356

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +  F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 357 GEGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 410


>gi|82544458|ref|YP_408405.1| flagellar hook protein FlgE [Shigella boydii Sb227]
 gi|81245869|gb|ABB66577.1| hook protein [Shigella boydii Sb227]
 gi|320186977|gb|EFW61690.1| Flagellar hook protein FlgE [Shigella flexneri CDC 796-83]
 gi|332094030|gb|EGI99082.1| flagellar hook protein flgE [Shigella boydii 3594-74]
          Length = 402

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATPQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|300696919|ref|YP_003747580.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum
           CFBP2957]
 gi|299073643|emb|CBJ53163.1| flagellar hook-filament junction protein 1 [Ralstonia solanacearum
           CFBP2957]
          Length = 642

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 131/407 (32%), Gaps = 15/407 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
            ++ N A      A         NI NA    Y R++ + T +           + V V 
Sbjct: 3   SSLLNIAATGLRAADVNLQVTGNNIANASTAGYSRQEAVQTENIPMATGAGYLGQGVNVT 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T +          + +  +A       Q       + S     N+     ++   ++ +S
Sbjct: 63  TVKRIYDQFLTAQVQSGQAATSAAD--QLSSLASSLDSYLSDSNSGLGTALTSFFNASDS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N S     +  +  A  +   FN    ++  +    + +++ +++++     ++  +
Sbjct: 121 LASNPSSTSARQVFLSAASTLQTRFNAIGGQLASLSNQVNTQVQTQVNSVNSTAQQIAAL 180

Query: 174 NDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ND I    A+     A+D  DQRD L+Q +++ I  S +  ++    +Y  +G  L +  
Sbjct: 181 NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGS 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    + Y  T  S         VS +  S +  G +  L+Q R +V+   QN + 
Sbjct: 241 QSYQLTTVASQYDPTQLSVGYKSPAGTVSID-DSQLGGGALGGLMQFRQNVLTPAQNSVG 299

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A  +    + ++    +     G  +                          +N    
Sbjct: 300 RLAAAVTADVNTQNKEGMDLNGNLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQG 359

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            D         + V +       +         + +   + G   + 
Sbjct: 360 NDYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSG 406



 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/457 (7%), Positives = 106/457 (23%), Gaps = 17/457 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +         R +   +   +  +  +++ Q    Q    +    +      +
Sbjct: 183 QIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKASVVQTSDGQYNIYVGNGQALVQGSQS 242

Query: 99  SPTHYISKLR--DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                ++       L    K+ +  +           +          +   +    +  
Sbjct: 243 YQLTTVASQYDPTQLSVGYKSPAGTVSIDDSQLGGGALGGLMQFRQNVLTPAQNSVGRLA 302

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
               +++     E   +N  +     S           +     ++  I  +   + N+ 
Sbjct: 303 AAVTADVNTQNKEGMDLNGNLGTDLFSTAAPSVAPSSSNTGTGALTATITNANAGQGNDY 362

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP---------------IFIDGVVVSS 261
            V Y+    T+             +  T                         +      
Sbjct: 363 QVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGTMNSGDSFLVRPTANAASTMQ 422

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              +        + + +           +  +      + +        + +   L    
Sbjct: 423 TLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGAPLTSAVNLTYSGGSLSGFP 482

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   +                Q  +                 +   ++          ++
Sbjct: 483 GSVTVTANGTSTTYTGTAPYTQGATYSFNGIQMSLSGTPATNDTFTVSANTANSTDGHNA 542

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + +     N   ++     N +  +    S +       + +    +    +  G
Sbjct: 543 SAFAQLRNATVLDNGTTSISSGWSNLVTQVGIQSSRASTNLTSQKSLLASSTAQQQSVSG 602

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           VNL +E   L+K +Q+Y  + K++   + +  +LL  
Sbjct: 603 VNLDDEAMSLMKYQQAYQAAAKVMQTANSLFDSLLSI 639


>gi|222032829|emb|CAP75568.1| flagellar hook protein flgE [Escherichia coli LF82]
 gi|312945638|gb|ADR26465.1| flagellar hook protein FlgE [Escherichia coli O83:H1 str. NRG 857C]
          Length = 401

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +  +F    V++SN  + +  G I                              
Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|323190588|gb|EFZ75860.1| flagellar hook protein flgE [Escherichia coli RN587/1]
          Length = 401

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 108/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDIIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +  +   +D    +     A                       L   A  ++ S  
Sbjct: 202 KTGDNHWDVYTLDSSDPTGTANPATT---------------------LVFNANGVLTSDP 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            KD                                +    Q     + +    +  K   
Sbjct: 241 TKDITTAAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|240137459|ref|YP_002961930.1| putative Flagellar hook protein flgE [Methylobacterium extorquens
           AM1]
 gi|240007427|gb|ACS38653.1| putative Flagellar hook protein flgE [Methylobacterium extorquens
           AM1]
          Length = 460

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 121/491 (24%), Gaps = 42/491 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +    A +     S   ++I  NI N+    Y R DT       +    +Q + + 
Sbjct: 1   MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60

Query: 61  NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109
                          +   +       Q F A+     +    +     +          
Sbjct: 61  GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L    +D                  I A     I    +  +   + 
Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +    +   DA        V     +    +S     +           T++ 
Sbjct: 181 NAASTQGLLSAFSDGTDAR-------VTPANGATTGSVSQTNAQSFIDNSIAGPALTVYT 233

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++ +   +    +++     D   + +   ++V                    NQ
Sbjct: 234 ASGAPVSVQSRWAKVAAADTATGTSDTWNLFTADKTSVNG------------------NQ 275

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                     +FS    +   +     +           ++   +S  +          +
Sbjct: 276 ASWTNIGQAFTFSPSGQMTAPTGKTVPISNLTVDGVNVGEVTLDLSGGLTQYAAASGTVT 335

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +       N   +     +   Y +          VA       L     +   
Sbjct: 336 TNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKP--DSLGN 393

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + +   S    + +K   V              ++  E S +I  +Q+Y+ + +++    
Sbjct: 394 YQQTVASGEPIVGLKDSTVVGA----NVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQ 449

Query: 470 KMLQTLLEGVK 480
            M+  LL  ++
Sbjct: 450 TMISDLLNVIR 460


>gi|218528943|ref|YP_002419759.1| hypothetical protein Mchl_0913 [Methylobacterium chloromethanicum
           CM4]
 gi|218521246|gb|ACK81831.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 460

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/492 (10%), Positives = 119/492 (24%), Gaps = 44/492 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +    A +     S   ++I  NI N+    Y R DT       +    +Q + + 
Sbjct: 1   MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60

Query: 61  NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109
                          +   +       Q F A+     +    +     +          
Sbjct: 61  GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L    +D                  I A     I    +  +   + 
Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180

Query: 170 LTVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
                  +    +   DA     +         +              + VYT+ G  + 
Sbjct: 181 NAASTQGLLSAFSDGTDARVTPANGATTGSVSQANAQSFIDNSIAGPALTVYTASGAPVS 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                        +   +   N    D   V+ NQ S    G+                 
Sbjct: 241 VQSRWAKVAAADTAAGTSDTWNLFTADKTSVNGNQASWTNIGQ----------------- 283

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                      +FS    +   +     +           ++   +S  +          
Sbjct: 284 ---------AFTFSPSGQMTAPTGKTVPISNLTVDSVNVGEVTLDLSGGLTQYAAASGTV 334

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +      +       N   +     +   Y +          VA       L     +  
Sbjct: 335 TTNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKP--DSLG 392

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + +   S    + +K   V      +       ++  E S +I  +Q+Y+ + +++   
Sbjct: 393 NYQQTVASGEPIVGLKDSTVVG----ANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTA 448

Query: 469 DKMLQTLLEGVK 480
             M+  LL  ++
Sbjct: 449 QTMISDLLNVIR 460


>gi|78776765|ref|YP_393080.1| flagellar hook-associated protein FlgK [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497305|gb|ABB43845.1| Flagellar hook-associated protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 628

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 130/416 (31%), Gaps = 24/416 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
           S+    +   +  + A    ++   NI NA+++ Y R+  +T                  
Sbjct: 4   SIFNSLSIGYSGLSAAQAGVSTTSHNITNAESEGYTRQRVVTAAATPVNMAPGNVGNGTQ 63

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           ++       N         S+        +            +         +    +  
Sbjct: 64  IMDIARIFDNFVYDRYTGISAEKEYSDFTKQTLETLSTYF-PEIDGVGIKSDLQDYYNMW 122

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++++ N   D +  ++    E +     ++  ++  +++  + ++++ +  +     EL+
Sbjct: 123 QTFADNPDNDAIKLSLAKQTEALSNGIISTQNKIYDLQSTLNTQLKVNVDEVNLLAKELS 182

Query: 172 VVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N +I+   A     A+D  D+R+ +   ++++IG  +I             G      
Sbjct: 183 KINISIEVAEAGDTFTANDLRDKRNSIELSLAKLIGADSI------------SGQINSNI 230

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
           +    + EK  SYT++     I   G     +  S         L   R   V I  ++ 
Sbjct: 231 IINSASNEKNGSYTLSVNGFNIVDGGTYHPIHISSDKNSNGFYELSYERQDGVLIAMDEK 290

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
               R+        D I GNS   P       + D  N     + E+        +  S 
Sbjct: 291 IPGGRIGAILDLRGDKIEGNSSGTPSNGTLQKVLDELNAFATTLIESTNNLYASSATKSM 350

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                S++        NL       +      + N     V  IN   T+   A +
Sbjct: 351 SSKNISINPTLPILDSNLNIRAGAFDIVIYDIDGNESARRVININNLTTMNGVAGS 406



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 4/234 (1%)

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           N   ++GV  S++    +   K        ++ +  F        +    +       + 
Sbjct: 396 NLTTMNGVAGSNSIQGQIIDQKDDNADANANNDIDDFMQFHWATYQGGGNALELVMDSSY 455

Query: 310 NSENVPGLFIAD---GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            ++        +      D  +     +  +   +     +                   
Sbjct: 456 GAKGYTFSIEDNLKTNQFDSGSNFAGALGLSRFFDGDSAKDIGLNSALRDNPTNIKAGKT 515

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           + +G   L  +      +N+ F+ V  +    T+          +     ++   +    
Sbjct: 516 SSSGDNTLALNMIQQQFENYSFE-VGKLKYESTIYGMFDVVATEVGIRTKEAILNNQTIT 574

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             FN     YS+   V++ EEL+ LIK + SY  ++K+I   D+M+QTLL   +
Sbjct: 575 AQFNATELEYSSISKVSIDEELTNLIKYQTSYGAASKIITTIDQMMQTLLGIKQ 628


>gi|322616547|gb|EFY13456.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620512|gb|EFY17376.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622506|gb|EFY19351.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629657|gb|EFY26432.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632623|gb|EFY29369.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636882|gb|EFY33585.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641580|gb|EFY38218.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644070|gb|EFY40616.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650030|gb|EFY46448.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653955|gb|EFY50278.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658487|gb|EFY54749.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663345|gb|EFY59547.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670079|gb|EFY66219.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674857|gb|EFY70948.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676673|gb|EFY72740.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682595|gb|EFY78614.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686652|gb|EFY82631.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195766|gb|EFZ80942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198342|gb|EFZ83446.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203174|gb|EFZ88204.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209177|gb|EFZ94114.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209681|gb|EFZ94610.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217863|gb|EGA02578.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222151|gb|EGA06535.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224923|gb|EGA09181.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229665|gb|EGA13788.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232890|gb|EGA16986.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240625|gb|EGA24667.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242939|gb|EGA26960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250256|gb|EGA34145.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252631|gb|EGA36469.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258841|gb|EGA42494.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261030|gb|EGA44623.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266939|gb|EGA50424.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269980|gb|EGA53429.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 403

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        +              N A      +  
Sbjct: 97  NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 144

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A         +    ++ +   T    ++          T++++     +       T 
Sbjct: 145 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E      D    ++   +                        L      ++ S    +
Sbjct: 205 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 246 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIIATNQNGYKPGDLVS 291

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 349

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402


>gi|167579496|ref|ZP_02372370.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           TXDOH]
          Length = 667

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/461 (12%), Positives = 131/461 (28%), Gaps = 32/461 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +  N A     +  +NI NA    Y     +   +          P+ V+ V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T   +        L+A  +         +  A                  I+     L++
Sbjct: 63  TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++  +
Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N+ I   ++     +  LDQRD+ + K+S+  G+  +   N    V+ + G  L      
Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQFAGVQVVP-TNGSYSVFLAGGQPLVVGNAS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S                 +++  G +  LL  R   +   Q 
Sbjct: 240 YQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI---------- 338
           QL  +A       + ++ +  +    PG  +      +        S +           
Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGGPIVYANQGNTSSSTLSASIANGAQ 359

Query: 339 ----CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                    Y  +   L D  + S               +              D    +
Sbjct: 360 PPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTVL 419

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
            T   L  ++  +        +        S      +   
Sbjct: 420 PTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQ 460



 Score = 87.0 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/427 (10%), Positives = 106/427 (24%), Gaps = 9/427 (2%)

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     + + S       +           S     + S T        +  S + + ++
Sbjct: 239 SYQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQ 298

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG   +  A +V                +        +   +   S  T+        
Sbjct: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGGPIVYANQGNTSSSTLSASIANGA 358

Query: 181 TASKHDAHDFLD-QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                D     D  +  L  + +  +  +     N   +       +L  T     +F  
Sbjct: 359 QPPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTV 418

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + +       +    +G  +++            +   +          QL      L  
Sbjct: 419 LPTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQGAVSAGYQLPAGTTTLTY 478

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + S K            +                +            + +       V  
Sbjct: 479 NASSKTLSGFPVGTTVTIAGTPPTSINITSATTPVPYDPTKGASLTISSTTQPAPSGVMN 538

Query: 360 KFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               ++       D          N   ++   + + +     N   TL       +  +
Sbjct: 539 GVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAI 598

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S           +   I+++  +  GVN  EE + L++ +Q Y  + K+I   + +
Sbjct: 599 GNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSV 658

Query: 472 LQTLLEG 478
            QT+L  
Sbjct: 659 FQTVLGL 665


>gi|56413836|ref|YP_150911.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362759|ref|YP_002142396.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128093|gb|AAV77599.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094236|emb|CAR59741.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 403

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/473 (9%), Positives = 110/473 (23%), Gaps = 72/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        +              N A      +  
Sbjct: 97  NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 144

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A         +    ++ +   T    ++          T++++     +       T 
Sbjct: 145 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E      D    ++   +                        L      ++ S    +
Sbjct: 205 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 246 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 291

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S +  L    
Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGAALLGTAG 349

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402


>gi|163850383|ref|YP_001638426.1| hypothetical protein Mext_0950 [Methylobacterium extorquens PA1]
 gi|163661988|gb|ABY29355.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium extorquens PA1]
          Length = 460

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 121/491 (24%), Gaps = 42/491 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +    A +     S   ++I  NI N+    Y R DT       +    +Q + + 
Sbjct: 1   MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDAKSQTAGSV 60

Query: 61  NM-------FDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109
                          +   +       Q F A+     +    +     +          
Sbjct: 61  GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L    +D                  I A     I    +  +   + 
Sbjct: 121 DKDGYLVNTAGAYLVGASLDPVTGQTNGTGPIKISNAVIPAKPTTTITYSANLPKSPATT 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +    +   DA        V     +    +S     +           T++ 
Sbjct: 181 NAASTQGLLSAFSDGTDAR-------VTPANGATTGSVSQTNAQSFIDNSIAGPALTVYT 233

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++ +   +    +++     D   + +   ++V                    NQ
Sbjct: 234 ASGAPVSVQSRWAKVAAADTAAGTSDTWNLFTADKTSVNG------------------NQ 275

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                     +FS    +   +     +            +   +S  +          +
Sbjct: 276 ASWTNIGQAFTFSPSGQMTAPTGKTVPISNLTVDGVNVGAVTLDLSGGLTQYAAASGTVT 335

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +       N   +     +   Y +          VA       L     +   
Sbjct: 336 TNDLKQNGYASGTLNSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKP--DSLGN 393

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + +   S    + +K   V      +       ++  E S +I  +Q+Y+ + +++    
Sbjct: 394 YQQTVASGEPIVGLKDSTVVG----ANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQ 449

Query: 470 KMLQTLLEGVK 480
            M+  LL  ++
Sbjct: 450 TMISDLLNVIR 460


>gi|315296707|gb|EFU56002.1| flagellar hook protein FlgE [Escherichia coli MS 16-3]
 gi|320196442|gb|EFW71065.1| Flagellar hook protein FlgE [Escherichia coli WV_060327]
          Length = 401

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNTFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +  +F    V++SN  + +  G I                              
Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|307318929|ref|ZP_07598360.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83]
 gi|306895343|gb|EFN26098.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83]
          Length = 402

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/480 (9%), Positives = 111/480 (23%), Gaps = 78/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL        +  N  S + +++  NI NA+   Y R  T  +                
Sbjct: 1   MSLYGTMRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSM-------------- 46

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     S            E    +         +    ++              +
Sbjct: 47  -------ILPSGNGSYNSGGVQTEVRYSISQQGATTFTTSASDLAIDGGGFFIVEGANGQ 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      +      N +   +     +A  +  + ++            +  I   
Sbjct: 100 EYLTRAGSFVPDSEGNLVNAAGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASDGLIATG 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           +       +                G +    +   +VVY S G T       +      
Sbjct: 160 STKGSMGANLP-------------SGAAVGDVSTTSLVVYDSQGNTRILDFNYEKTGANA 206

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            S  V   ++   +    ++ N   +                                  
Sbjct: 207 WSVEVVDRTSSTVLGTQTLNFNADGS---------------------------------- 232

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                     +        A             ++  +    Q     +        +  
Sbjct: 233 --------LTATPATLTTSAMTALPGTGANLSALTIDLTKTTQLGYAFNADGGNIDGNAP 284

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +          +A + +   L   + N         S    
Sbjct: 285 SKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLRPESGNVYSQ--GVDSGVII 342

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   F  I      +  V++ EEL+ +I+ +++Y  ++K+     ++L+ L+   +
Sbjct: 343 TGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 402


>gi|194432446|ref|ZP_03064733.1| flagellar hook protein FlgE [Shigella dysenteriae 1012]
 gi|194419333|gb|EDX35415.1| flagellar hook protein FlgE [Shigella dysenteriae 1012]
 gi|332092817|gb|EGI97885.1| flagellar hook protein flgE [Shigella dysenteriae 155-74]
          Length = 401

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 109/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +     A+                      L   A  ++ S  
Sbjct: 202 KTGDNNWEVYTQDSSDPTDTADRAMT---------------------LVFNANGVLTSNP 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            ++   G                   +        +    Q     + +    +  K   
Sbjct: 241 TENITTGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASKGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|134297191|ref|YP_001120926.1| flagellar hook-associated protein FlgK [Burkholderia vietnamiensis
           G4]
 gi|134140348|gb|ABO56091.1| flagellar hook-associated protein FlgK [Burkholderia vietnamiensis
           G4]
          Length = 655

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 126/408 (30%), Gaps = 18/408 (4%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQR 56
            N   +  N A     +  +NI NA    Y     +              P+ V  VT +
Sbjct: 6   MNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEESGQYTASGYLPQGVNTVTVQ 65

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            +        L+A  S  G Q    S  A               +  I+     L++ + 
Sbjct: 66  RQYSQYLSDQLNAAQSQGGAQSTWYSLVAQLNNYVGSPTA--GISTAITNYFTGLQNVAN 123

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S+  + +T I NA+ +      + ++   +R   + ++   +S +  + S++  +N  
Sbjct: 124 NASDPSVRQTAISNAQILADQLKATGQQYDALRQSVNTQLTSTVSQINTYTSQIAQLNQQ 183

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I   ++     +  LDQRD+ +  +S + G+  + RN++   V+ + G  L         
Sbjct: 184 IGAASSQGQPPNQLLDQRDLAVSNLSSLAGVQVV-RNDSGYSVFLAGGQPLVVADKSYQL 242

Query: 237 FEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
               +S   +     S+            S   +++  G +  LL  R   +   Q QL 
Sbjct: 243 AAVASSSDPSELTVVSQGIAGANPKTPDQSLPDASLSGGTLGGLLAFRRQTLDPAQAQLG 302

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A       + ++ +  +    PG  +                                
Sbjct: 303 ALATSFAAQVNAQNALGVDLSGNPGGSLFAVAPATVFANQGNTGNAALSVSFTNPAQPTT 362

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            D         + + + A    +        +   +    +    N  
Sbjct: 363 GDYTLSFDGTNYTLADRASGSVIGQSTSMPASLGGLQLSFSSGAMNAG 410



 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/419 (7%), Positives = 97/419 (23%), Gaps = 2/419 (0%)

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           + DK     + A        +  +     +     + S               +      
Sbjct: 235 VADKSYQLAAVASSSDPSELTVVSQGIAGANPKTPDQSLPDASLSGGTLGGLLAFRRQTL 294

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              +  +            +   +    +         ++    F ++    N A+    
Sbjct: 295 DPAQAQLGALATSFAAQVNAQNALGVDLSGNPGGSLFAVAPATVFANQGNTGNAALSVSF 354

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +                  +     S  V   +  +  +  G  L  +       ++  
Sbjct: 355 TNPAQPTTGDYTLSFDGTNYTLADRASGSVIGQSTSMPASLGGLQLSFSSGAMNAGDQFT 414

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                       +     ++   ++               +V    +   ++    +   
Sbjct: 415 VLPTRGALTGFGLATTSGAAIAAASPVVASASTTNIGTGKIVSNGVSSGYQIPATKLTYD 474

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR--DGGSVSK 359
           +  + ++G                +                   +    L          
Sbjct: 475 AATNSLSGFPVGTTVTIAGTPPTSVTIANPTDSVPYNASQGAKMTMSGTLNGVTVTLSGA 534

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++  Y    +   ++   + +    +      TL     N +  +    S   
Sbjct: 535 PSDGDSFSIGPYAGGTSDGANALALSQLVTAKSLGGGTTTLTGAYANYVNAIGNTASQLK 594

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 595 SSSAAQTSLVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAQTLFQTVLGL 653


>gi|59712481|ref|YP_205257.1| flagellar hook protein FlgE [Vibrio fischeri ES114]
 gi|197335363|ref|YP_002156700.1| flagellar hook protein [Vibrio fischeri MJ11]
 gi|24459277|gb|AAL86630.1| FlgE [Vibrio fischeri ES114]
 gi|59480582|gb|AAW86369.1| flagellar hook protein FlgE [Vibrio fischeri ES114]
 gi|197316853|gb|ACH66300.1| flagellar hook protein [Vibrio fischeri MJ11]
          Length = 432

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/481 (9%), Positives = 114/481 (23%), Gaps = 62/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQRS 57
             A +    A +   +   N+ NA+   +            +                  
Sbjct: 3   YVALSGLAAAQKDLNTTSNNLANANTYGFKESRAEFGDVYSSSLFSNAKTTTGGGAQTTK 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +   Q F A+ +          S            E+Y   
Sbjct: 63  VAQQFHEGSSIYTNNPMDLRISGQGFFAVAKDRLQPATNELS---RNGAFHLDNENYVTT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    +D     V ++   A ++            +EI                +
Sbjct: 120 SNDEFLLGYEVDPESGNVSSYEPKALKIPDQFGKPKPTENVEIG---------------M 164

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                         D  D      S  +     +     M  Y     T         + 
Sbjct: 165 NLPATEVPKDPALFDMNDPDTYNKSTSVTTYDSLGQPYKMTTYYVKDATQPNRWNVFYSS 224

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +     + +               S    G+I   +   +       N    +A   
Sbjct: 225 TDTDGEKPVNINGG------------DSTNAAGQIGHSIIFNNDGTTQSINAGQPVATTT 272

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           +G          N              D   +                      R     
Sbjct: 273 LGE------NGLNLNGADPSQTLTMKFDNPTQFSAPFEMR--------------RFSEDG 312

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +     +  ++    +++  Y +  +       +  +     L +       W     S 
Sbjct: 313 ATTGYLSKVDIDKSGNIVGSYSNGKDVTLGRVAMVRVTNQQGLAQ--NGGTQWSTTQASG 370

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +Q  F  I         +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 371 AAIWGEANQGSFGDIQSGTLEQSNIDMTQELVDLISAQRNFQANSRSLDVHNQLQQNILQ 430

Query: 478 G 478
            
Sbjct: 431 I 431


>gi|11386807|sp|P57422|FLGE_BUCAI RecName: Full=Flagellar hook protein flgE
 gi|25403598|pir||E84969 flagellar hook protein flgE [imported] - Buchnera sp.  (strain APS)
 gi|10039011|dbj|BAB13045.1| flagellar hook protein flgE [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 405

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 115/478 (24%), Gaps = 83/478 (17%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDT--------MTTISPENVTVVTQRSENK 60
            A +     +     I  NI NA    Y  R              +  N   V   S  +
Sbjct: 2   IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N  + +L      +    +   F  L +         +       +     +    N+  
Sbjct: 62  NFNNGMLVETGRDLDLGIIKDGFFRLVD------SQGHVYYTRDGQFFLDKDQNIINIQG 115

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L       ++    N +                           L  + + N  I   
Sbjct: 116 MYLTGLNTSCSKSDFNNRSN--------------------------LEPINLKNSNILKN 149

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +          R+   +   +          +    +   +     E +    N ++ 
Sbjct: 150 KPTSEIMLKAFLNRNTESKSSVDNSDNKLSKPEDYMTYISIYNKEGKKEDITVSFNKKET 209

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           N +TV  ESN       + +S   +    G++                            
Sbjct: 210 NKWTVNVESNDSDDKETIKNSFDLTFNDDGEL---------------------------- 241

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                             + +       K             Q  S+ S+     +   +
Sbjct: 242 --------------TSDNVFNITSKDSKKYENITLNLTGTIEQSNSDVSWEEHSQNGYPQ 287

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++    ++I  YC+   +      ++       L   + N          ++  
Sbjct: 288 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATA-ESGEAKT 346

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +S        V+L +EL  +I  +++Y  + +     DK++ TL+  
Sbjct: 347 AMKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLINL 404


>gi|254473478|ref|ZP_05086875.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062]
 gi|211957594|gb|EEA92797.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062]
          Length = 397

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/479 (9%), Positives = 108/479 (22%), Gaps = 84/479 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L  + N + +  N  S + +++  NI NA+   Y R  T  +    +       S   
Sbjct: 1   MGLYGIMNTSVSGMNAQSNKLSTVADNISNANTVGYKRYKTAFSSLVGSGGTSGHESGIV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
           N           A              +          S                  N  
Sbjct: 61  NTTVVQTVRQQGAFNFTSRGTDLAINGKGFFQVQDSQGSTYYTRAGDFVLDKNGQMVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L                                + ++++      S    +   +  
Sbjct: 121 GYKLLSAG-------------------------GAPVTVDLNTPVWQASSEGELGVNLAS 155

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T  +  A  +    D           +S   +N N + +               ++   
Sbjct: 156 STPVRTGAPSYPGNFD-------YKTSVSAYDQNGNVVKIDLVYSKIGQNMTGSTVDDST 208

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                   ++ P+ +  V +  +    +  G    L     +   +  +    +      
Sbjct: 209 WKVQAYNQDTPPVELANVDLVFDGDGTLQTGSPDELAFTVPNGETLTLDLSKTVTAGDKF 268

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S ++ D        +  + I    +               +     SNP  L+       
Sbjct: 269 SVNKVDVDGYGPSTIKTIRIEADGRVFGVYEGSAEKLLDQIQIVNFSNPDGLQAKSGNVY 328

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  + A                                                  
Sbjct: 329 AATDASGDPA-------------------------------------------------- 338

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +       F  +         V+L  EL+ +++ +++Y+ + K+   + ++LQ L   
Sbjct: 339 -VGFPGDNGFGSLYSGAVEGSNVDLAAELTEMVQAQRTYSANTKVFNASSELLQELNNL 396


>gi|161526179|ref|YP_001581191.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           ATCC 17616]
 gi|189349105|ref|YP_001944733.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           ATCC 17616]
 gi|160343608|gb|ABX16694.1| flagellar hook-associated protein FlgK [Burkholderia multivorans
           ATCC 17616]
 gi|189333127|dbj|BAG42197.1| flagellar hook-associated protein 1 [Burkholderia multivorans ATCC
           17616]
          Length = 659

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/391 (11%), Positives = 121/391 (30%), Gaps = 18/391 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +  N A     +  +NI NA    Y     +   +          P+ V  V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVNTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +        L+   +  G      S  A               +  I+     L++
Sbjct: 63  TVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTA--GISTAITNYFTGLQN 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++  + +T + NA+ +      + ++   +R   + ++   +S +  + +++  +
Sbjct: 121 VANNAADPTVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINTYTAQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I   ++     +  +DQRD+ +  +S + G+  +  ++    V+ + G  L      
Sbjct: 181 NQQIAAASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDGY-SVFLAGGQPLVVADKS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S+                +++  G +  LL  R   +   Q 
Sbjct: 240 YQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +L  +A       + ++ +  +     G  +            +   +         ++ 
Sbjct: 300 KLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSFSNASQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
               D         + + + A    +     
Sbjct: 360 PTTGDYTLSFDGTQYTLTDRATGSVVGTSNT 390



 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 94/363 (25%), Gaps = 4/363 (1%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    K     A    Q    +A  +            +    +            ++ F
Sbjct: 295 DPAQAKLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSF 354

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFE 238
             AS+    D+    D     +++    S +   N     +   D +    T+     F 
Sbjct: 355 SNASQPTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSSGTMQAGDQFT 414

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            + +            +G  +++     ++            +  V   +Q     +   
Sbjct: 415 VLPTRGALDGFQLATSNGSAIAAASPVVTSAASTNAGTATITQGPVSAGYQVPATTLTYD 474

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGG 355
                    P                I      +    +    +     +  +       
Sbjct: 475 AATKSLSGFPAGTTVTIAGTPPQTVTITSSTTPVPYDPAAGATLTMSGTAPGALNGVTVS 534

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +   +  Y    N   ++   + +    +  N  VTL     + +  +    
Sbjct: 535 LSGAPADGDTFRIGPYAGGTNDGTNALALSKLVTAKSFGNGTVTLTGAYASYVNDIGNAA 594

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S           +   I+ +  +  GVN  EE + L++ +Q Y  + K+I     + QT+
Sbjct: 595 SQLKSSSAAQTALVGQITSAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 654

Query: 476 LEG 478
           L  
Sbjct: 655 LGL 657


>gi|144900940|emb|CAM77804.1| Possible flagellar hook-associated protein 1 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 554

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 84/554 (15%), Positives = 192/554 (34%), Gaps = 76/554 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTVV 53
           MSL      A         + A    NI NAD + Y  +           +     V ++
Sbjct: 1   MSLTLALGSATASLRTIQSELALAANNIANADTEGYSVKSATKVNTTTGGSGIGTGVDII 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFE----ALKEMMSADDHYNNSPTHYISKLRD 109
              S+      K +   +SA  +      +      +   +++ D    + +  +++L  
Sbjct: 61  GISSKVDANLLKSIITATSANAEAATDADYLDRLAEILGQLTSSDSGGGTLSASLTELSA 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +LE  +     D L    +    +   +   ++ +VQ +RA+AD  IE  ++++   L  
Sbjct: 121 TLEELAATPESDTLKTQAVLQLTDAAASLRDTSAQVQDLRAEADDGIESAVASVNESLHA 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +ND+I    +      D  DQR VL+ ++S  + IS     +  M +YT  G  L  
Sbjct: 181 IDSLNDSIVLAQSRGESTADLEDQRMVLVAQLSTQMDISYYTGEDGAMTIYT-GGQPLLN 239

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD--------- 280
           +   +++++  N+ T  +     F    +   +  ++V  G I AL+++RD         
Sbjct: 240 SSVHELSYQASNTVTSETVYPGGFDAITLNGQDITTSVKSGTIAALVELRDDTLPAVQDQ 299

Query: 281 --SVVPIFQNQLDEMARVLIGSFSEKDPIAG-----------------------NSENVP 315
             ++    ++Q++ ++     S + ++                           +     
Sbjct: 300 LDTIATDLRDQMNALSNQGSASPAPQNLTGTVAGLAGTDAIAGTGTLRVGLVDSDGSAQT 359

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG----- 370
              I        + L   ++    V+    ++   + +    S     +  ++ G     
Sbjct: 360 LTDIDMSTITSVDDLLGALNAIAGVSASLDADGQLVVESTDASLGIALSGGDVGGKSVSG 419

Query: 371 ----------YPDLINHYCDSFNKNFIFDPVAGINTNVTLLE---------------YAR 405
                               S   +     V  +  N   L+                A 
Sbjct: 420 YFGLNDMLTGDGAEDLFVSASLTADPSLLAVGSLGDNGIGLDGGALAQAMADAIDTSAAT 479

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           + +  +      +  +    +     +++S+S+  GVN+ EE + + ++E +Y+ S +++
Sbjct: 480 DLVADIGAKSKAADSVATSRETTLTALTDSFSSRYGVNIDEETAHISELENAYSASAQVL 539

Query: 466 MFTDKMLQTLLEGV 479
               +M  +LL  V
Sbjct: 540 SAIQEMFDSLLNAV 553


>gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On
           Docking An X-Ray Derived Structure And Terminal Two
           Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem
           Map
          Length = 402

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 1   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 48

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 49  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        +              N A      +  
Sbjct: 96  NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 143

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A         +    ++ +   T    ++          T++++     +       T 
Sbjct: 144 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E      D    ++   +                        L      ++ S    +
Sbjct: 204 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 244

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 245 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 291 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 349 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|150395503|ref|YP_001325970.1| flagellar hook protein FlgE [Sinorhizobium medicae WSM419]
 gi|150027018|gb|ABR59135.1| flagellar basal body FlaE domain protein [Sinorhizobium medicae
           WSM419]
          Length = 402

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/480 (9%), Positives = 111/480 (23%), Gaps = 78/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL        +  N  S + +++  NI NA+   Y R  T  +                
Sbjct: 1   MSLYGTMRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFS---------------- 44

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 +   S            E    +         +    ++              +
Sbjct: 45  -----SMILPSGNGAYNSGGVQTEVRYSISQQGATTFTTSASDLAIDGGGFFIVEGANGQ 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      +      N +   +     +A  +  + ++               I   
Sbjct: 100 EYLTRAGSFVPDSEGNLVNAAGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASKGLIAAG 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +     +      V     + ++             VY S G T       +      
Sbjct: 160 STTGSMGANLPSGAAVGDISTTSLV-------------VYDSQGNTRILDFNYEKTAANA 206

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            S  V   ++   +    ++ N   +                                  
Sbjct: 207 WSVEVVDRTSSTVLGTQTLNFNADGS---------------------------------- 232

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                     +        A             ++  +    Q     +        +  
Sbjct: 233 --------LTATPATLTTSAMASLPGTGANLSALTIDLTKTTQLGYAFNADGGSIDGNAP 284

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   Y +          +A + +   L   + N         S    
Sbjct: 285 SKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLKPESGNVYSQ--GVDSGVII 342

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   F  I      +  V++ EEL+ +I+ +++Y  ++K+     ++L+ L+   +
Sbjct: 343 TGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 402


>gi|16760053|ref|NP_455670.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16764533|ref|NP_460148.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142176|ref|NP_805518.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179694|ref|YP_216111.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167553035|ref|ZP_02346785.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994041|ref|ZP_02575133.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168264030|ref|ZP_02686003.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467129|ref|ZP_02700971.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822620|ref|ZP_02834620.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194442954|ref|YP_002040431.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197250199|ref|YP_002146866.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265088|ref|ZP_03165162.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198245171|ref|YP_002215960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|204930842|ref|ZP_03221715.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353085|ref|YP_002226886.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857315|ref|YP_002243966.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161844|ref|ZP_03347554.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424680|ref|ZP_03357445.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582037|ref|ZP_03363863.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213648926|ref|ZP_03378979.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865505|ref|ZP_03387624.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224584319|ref|YP_002638117.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238911003|ref|ZP_04654840.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289806609|ref|ZP_06537238.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289828580|ref|ZP_06546405.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392287|sp|P0A1J1|FLGE_SALTY RecName: Full=Flagellar hook protein flgE
 gi|60392288|sp|P0A1J2|FLGE_SALTI RecName: Full=Flagellar hook protein flgE
 gi|25511789|pir||AB0640 flagellar hook protein FlgE [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|47673|emb|CAA36022.1| flgE protein (AA 1-403) [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16419694|gb|AAL20107.1| hook protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16502347|emb|CAD08301.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137806|gb|AAO69367.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62127327|gb|AAX65030.1| flagellar biosynthesis, hook protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194401617|gb|ACF61839.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195630413|gb|EDX49039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213902|gb|ACH51299.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243343|gb|EDY25963.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197939687|gb|ACH77020.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|204320301|gb|EDZ05505.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205272866|emb|CAR37795.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322416|gb|EDZ10255.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328054|gb|EDZ14818.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205341012|gb|EDZ27776.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205347322|gb|EDZ33953.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206709118|emb|CAR33451.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224468846|gb|ACN46676.1| flagellar hook protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261246388|emb|CBG24197.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992951|gb|ACY87836.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157718|emb|CBW17210.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912164|dbj|BAJ36138.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086383|emb|CBY96156.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321223795|gb|EFX48858.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322714164|gb|EFZ05735.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129447|gb|ADX16877.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326623708|gb|EGE30053.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628165|gb|EGE34508.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988068|gb|AEF07051.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 403

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 72/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        +              N A      +  
Sbjct: 97  NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQ------------GANPAPITIPNTLM 144

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A         +    ++ +   T    ++          T++++     +       T 
Sbjct: 145 AAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTK 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E      D    ++   +                        L      ++ S    +
Sbjct: 205 DNEWAVYTHDSSDPAATAPTTAS-------------------TTLKFNENGILESGGTVN 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 246 ITTGTING--------------ATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVS 291

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 292 YQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAG 349

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 SGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 402


>gi|82777309|ref|YP_403658.1| flagellar hook protein FlgE [Shigella dysenteriae Sd197]
 gi|309788143|ref|ZP_07682749.1| flagellar hook protein flgE [Shigella dysenteriae 1617]
 gi|81241457|gb|ABB62167.1| hook protein [Shigella dysenteriae Sd197]
 gi|308923995|gb|EFP69496.1| flagellar hook protein flgE [Shigella dysenteriae 1617]
          Length = 402

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKAATTLKFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G          +    +                 Q     + +    +  K   
Sbjct: 242 ANNIATGAINGAEPATFSLSFPNS--------------MQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|328543140|ref|YP_004303249.1| flagellar hook-associated protein FlgK [polymorphum gilvum
           SL003B-26A1]
 gi|326412886|gb|ADZ69949.1| Flagellar hook-associated protein FlgK [Polymorphum gilvum
           SL003B-26A1]
          Length = 617

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/445 (14%), Positives = 148/445 (33%), Gaps = 15/445 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           M L +  + A    +   +Q      N+ NA+   Y  +            +   +    
Sbjct: 1   MGLTSALHTALFGLSYNQKQIDVTAANVANANVAGYTTKSVSAHVYFDNGGNVSGILSTE 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R +             +     + + ++    + +      ++S    +S L   L + 
Sbjct: 61  IRRQVNEAIQSAYWGSLADANYSKTVAAYTERLDEIFGTIDNSSSLPSLMSDLTAGLSTL 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
                     + V+  A+ + +  N+S   +Q +R + D  I +++  + + L ++ +++
Sbjct: 121 VNTPDSYAARQEVLSVADTLARQLNSSYELLQSMRQETDSLIRMQVGEVNQLLGQIELID 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPR 233
           + I+   A   +  + +DQRD  L+++S    IS     +  + + T +G  L+ +    
Sbjct: 181 EKIEAAKAVGANTANLVDQRDRYLEQLSGYADISITQDGSGGLQINTRNGQMLYGDGHAS 240

Query: 234 DINFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            ++F+   +         I +        + G++   G + ALL++RD  +   Q QLDE
Sbjct: 241 SLSFDPTGTLGAGQPGGGITVTTYGGTRYDLGASSSSGSLMALLELRDDALVQAQAQLDE 300

Query: 293 MARVL------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +A  L      +   SE      +      L        +  +       T  V      
Sbjct: 301 IAAQLSLAFSNVTVASEDATDGTDVGYELDLSGLQPGNTVSLRYVDSAGTTQTVTFVAVE 360

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYAR 405
           +PS L   G+ +      V  +     +   Y           D     +    L+    
Sbjct: 361 DPSLLPLDGATTPTAGDTVYGIDISGGVPAGYVTQIIAALSATDLNVSDDGLGNLVVLGD 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFN 430
                +  + S +  +   +     
Sbjct: 421 TGTNTVVSSLSGNVTVTDPANQGLG 445



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 114/431 (26%), Gaps = 5/431 (1%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA-LKEMMSADDHYNNSPTHYISKLRDS 110
           V    +   +  D+ L   S                    +    Y +     +S     
Sbjct: 189 VGANTANLVDQRDRYLEQLSGYADISITQDGSGGLQINTRNGQMLYGDGHASSLSFDPTG 248

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                +      +        +    + + S   + ++R DA  + + ++  +   LS  
Sbjct: 249 TLGAGQPGGGITVTTYGGTRYDLGASSSSGSLMALLELRDDALVQAQAQLDEIAAQLSLA 308

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMVVYTSDGTTLF 228
                          D    LD   +       +  + +    +    + V       L 
Sbjct: 309 FSNVTVASEDATDGTDVGYELDLSGLQPGNTVSLRYVDSAGTTQTVTFVAVEDPSLLPLD 368

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                                       +   S     V    +  L+ + D+      +
Sbjct: 369 GATTPTAGDTVYGIDISGGVPAGYVTQIIAALSATDLNVSDDGLGNLVVLGDTGTNTVVS 428

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L       +   + +        +                   G + +I +NP   ++P
Sbjct: 429 SLSGNVT--VTDPANQGLGLALFVDAGNGMSLYTGALEGGGQKTGFAGSIRLNPAVINDP 486

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S L    +V         +   Y                     G     T+L+Y    +
Sbjct: 487 SQLVIYETVPAANSGKDSSRPQYLLDALATTTITFDPAAGIGSGGDPFKGTMLDYVNQVV 546

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +  +    +       + + ++++  Y  +  V++  EL+FLI+++ +Y  + +++   
Sbjct: 547 AFQGEQSEKAVLTSQAHETITSNLAIRYEESYAVDVDAELAFLIELQNAYAANARVMQAA 606

Query: 469 DKMLQTLLEGV 479
            +M   LL  V
Sbjct: 607 KEMFDVLLNSV 617


>gi|237752943|ref|ZP_04583423.1| flagellar hook-associated protein FlgK [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375210|gb|EEO25301.1| flagellar hook-associated protein FlgK [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 608

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/461 (12%), Positives = 133/461 (28%), Gaps = 46/461 (9%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVT 51
            LL+  N                  NI NA+N+ Y R+   ++             + + 
Sbjct: 3   GLLSSLNTPYTGLTGHQVMVDVTGNNIANANNEFYSRQVVRSSAQTPLWKQNYALGQGLN 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           ++T    +           SS         S           +         +    ++ 
Sbjct: 63  ILTVERVHDEYSFMRYKKASSEKTFYDTSFSGLKEASAYY-PEVDGVGIYKDLQSYFNAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +  S    +      + + A+ + +N   + + ++ ++   + E+++ +  + R   ++ 
Sbjct: 122 KDLSTKAGDPAQKIALAEQAKTLTKNIQETRKSLEYLQQRLNDEMKVAVDEVNRLGEQIA 181

Query: 172 VVNDAIKFKTASKHD--AHDFLDQRDVLLQKISEIIGISTIVRN------------NNDM 217
           ++N  I        +  A+D  D RD    +I+ +IG     +N            + D 
Sbjct: 182 ILNKQIAEYENQDMNKKANDLRDLRDQYEFEINNLIGCDVFKQNVQGSACVDKDIADFDD 241

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
               + G                NS   +      ++       +  +++ +GK+ ALL 
Sbjct: 242 DYTLTIGGKSIVDGTSFHPLVLDNSENPSGIYTIKYLRSDHKPYDLTNSLNQGKVGALLD 301

Query: 278 IRD-----------SVVPIFQNQLDEMARVLIGSFSEKD---------PIAGNSENVPGL 317
           +               + ++ N LD  A  +I + +                  +    L
Sbjct: 302 LIRTEDVLNCNGTLGKLQVYINDLDTFANGIIEATNNIYAESSQRSAKSDQLTLDARDAL 361

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
             +               +            + L     +  +   NV +     + +N 
Sbjct: 362 TTSGYNVREGTFKVVMYDKDGKELGAREVTINNLTTMQDIVNQLNGNVDDN-KDGNPLND 420

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
           + D F   +  D      T+    E    SI     N + +
Sbjct: 421 FDDRFQAVYNNDSKTFSITSKNPAEDIFISIQDNGTNFAGA 461



 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 81/275 (29%), Gaps = 2/275 (0%)

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
           I        +    ++    L       +     N    T +      DG  + + + + 
Sbjct: 333 IEATNNIYAESSQRSAKSDQLTLDARDALTTSGYNVREGTFKVVMYDKDGKELGAREVTI 392

Query: 267 VPKGKIKALLQIRDSVVPIFQN--QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                ++ ++   +  V   ++   L++        ++        +   P   I   I+
Sbjct: 393 NNLTTMQDIVNQLNGNVDDNKDGNPLNDFDDRFQAVYNNDSKTFSITSKNPAEDIFISIQ 452

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D               +    SN    +             + + G   + N        
Sbjct: 453 DNGTNFAGAFGVNRFFDGNDASNIELAQQYREDPTLIRAYREAVDGNFVIANKMQQLQFD 512

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
              F    G     T+  Y R   G +      +       + V++   + Y     V++
Sbjct: 513 KITFTDYKGEQREETISGYFRYIAGKVASETQATQTTQSTKEAVYSATKQEYKALCEVSV 572

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +EL  LI+ +  Y+ + K+I   D+M+ TLL   
Sbjct: 573 DDELVNLIRFQSGYSANAKMITTIDEMINTLLGIK 607


>gi|306814075|ref|ZP_07448248.1| flagellar hook protein FlgE [Escherichia coli NC101]
 gi|305852712|gb|EFM53160.1| flagellar hook protein FlgE [Escherichia coli NC101]
          Length = 401

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNVAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNTFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +  +F    V++SN  + +  G I                              
Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|83720978|ref|YP_440808.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           E264]
 gi|167617593|ref|ZP_02386224.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           Bt4]
 gi|257140541|ref|ZP_05588803.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           E264]
 gi|83654803|gb|ABC38866.1| flagellar hook-associated protein 1 [Burkholderia thailandensis
           E264]
          Length = 667

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/461 (12%), Positives = 131/461 (28%), Gaps = 32/461 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +  N A     +  +NI NA    Y     +   +          P+ V+ V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T   +        L+A  +         +  A                  I+     L++
Sbjct: 63  TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++    +T + NA+ +      + ++  ++R   + ++   ++ +  + S++  +
Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N+ I   ++     +  LDQRD+ + K+S+  G+  +   N    V+ + G  L      
Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSKLSQFAGVQVVP-TNGSYSVFLAGGQPLVVGNAS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S                 +++  G +  LL  R   +   Q 
Sbjct: 240 YQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI---------- 338
           QL  +A       + ++ +  +    PG  +      +        S +           
Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGSPIVYANQGNTSSSTLSASIANGAQ 359

Query: 339 ----CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                    Y  +   L D  + S               +              D    +
Sbjct: 360 PPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTVL 419

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
            T   L  ++  +        +        S      +   
Sbjct: 420 PTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQ 460



 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/427 (10%), Positives = 107/427 (25%), Gaps = 9/427 (2%)

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     + + S       +           S     + S T        +  S + + ++
Sbjct: 239 SYQLAAVASKSDPSELTIVSNGVAGANPQGSPQYLPDASLTGGTLGGLLAFRSQTLDPAQ 298

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG   +  A +V                +        +   +   S  T+        
Sbjct: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGNLFTAGSPIVYANQGNTSSSTLSASIANGA 358

Query: 181 TASKHDAHDFLD-QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                D     D  +  L  + +  +  +     N   +       +L  T     +F  
Sbjct: 359 QPPSSDYALSYDGSKYTLTDRATGSVVGTATPATNPPTMTIGGLNLSLSATPNAGDSFTV 418

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + +       +    +G  +++            +   +          QL      L  
Sbjct: 419 LPTRGALEGFSLATANGSAIAAASPVLAAGVSTNSGTGVISQGAVSAGYQLPAGTTTLTY 478

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + S K            +                +S           + +       V  
Sbjct: 479 NASSKTLSGFPVGTTVTIAGTPPTSINITSATTPVSYDPTKGASLTISSTTQPAPSGVMN 538

Query: 360 KFLWNVKNLAGYPD--------LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               ++       D          N   ++   + + +     N   TL       +  +
Sbjct: 539 GVSVSLSGTPADGDQFTIGANKGTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAI 598

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S           +   I+++  +  GVN  EE + L++ +Q Y  + K+I   + +
Sbjct: 599 GNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSV 658

Query: 472 LQTLLEG 478
            QT+L  
Sbjct: 659 FQTVLGL 665


>gi|302037613|ref|YP_003797935.1| flagellar hook protein FlgE [Candidatus Nitrospira defluvii]
 gi|300605677|emb|CBK42010.1| Flagellar hook protein FlgE [Candidatus Nitrospira defluvii]
          Length = 407

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/480 (9%), Positives = 113/480 (23%), Gaps = 73/480 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +L     A    ++       I  NI N     +       +                
Sbjct: 1   MGILTSMFTAVTGLSSYGNAMGVIGNNIANVGTAGFKSSRATFSD--------------- 45

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                      S   Q  L      ++   S         T  ++   +           
Sbjct: 46  --LISSSLGGGSGSDQIGLGVFLNDVQTNFSQGSMTTTGNTFDLAIDGNGFYLVRNTSGA 103

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           +   +      + + Q  ++S   +Q  +AD +  I   I  +                 
Sbjct: 104 NFYSRAGQFKVDSLGQVVDSSGALLQGYQADTNGNITSTIGGI----------------- 146

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                                         + ++    V T+    L             
Sbjct: 147 -----------------------------TLTSSAVPPVATTSAEILGNLNANATAPTAA 177

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            S T T+  N         S+        G    +                ++      +
Sbjct: 178 FSITDTTSYN--------FSTGMTFYDSLGNSHQMQLYFRKTAANAWGVYSQIDGGAAAA 229

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +     A  +    G               Q ++  +    Q+ +              
Sbjct: 230 QTNMTFNASGAVTAGGTQTVTATLTNGATTPQAMTVDLSSLTQFGAASGVASQTQDGYSS 289

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  ++     ++  + +   +      ++       L+    N   +LE   S +  
Sbjct: 290 GTLDRISVDKEGRVMAQFTNGETRALAQVVLSRFTNPDGLVNVGDNH--FLETVESGAAL 347

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               +      +         V+L +E   +I  ++++  +++ I  +D+MLQ L+   +
Sbjct: 348 AGAPTINGLGRVLSGTVEQSNVDLGKEFVDMIITQRAFQANSRAITTSDEMLQELVNLKR 407


>gi|149182512|ref|ZP_01860985.1| flagellar hook protein [Bacillus sp. SG-1]
 gi|148849772|gb|EDL63949.1| flagellar hook protein [Bacillus sp. SG-1]
          Length = 396

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/474 (9%), Positives = 120/474 (25%), Gaps = 78/474 (16%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
                +   N   +   I  NI N +   + +                         D +
Sbjct: 1   MYSGISGMKNFQTKLDVIGNNIANVNTYGFKKGRVT-------------------FKDTM 41

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
               S A   Q        ++  + +     ++        + SL+S  + L   I G  
Sbjct: 42  NQTISGASAAQEARGGRNPMQVGLGSTLSTIDTIHT-----QSSLQSTGRPLDLAINGDG 96

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                +   Q ++ +                +++ +    + +   VN   +        
Sbjct: 97  YFVVKQGDAQFYSRAGNFYLDDNGTLVNGDGMKVQSYENGVLQDIKVNVNAQLPAKITES 156

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
              F +  +  +     +  I+ +  +   + +          +    + F   N  T  
Sbjct: 157 ISMFGNLSNDAVGNEPFVQQINVVTNDGKQITLDMKLTPQGTPSTKWGMEFINQNGDTPL 216

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           + +  +   G  V                                               
Sbjct: 217 NSAAYVLDFGNPV----------------------------------------------- 229

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +    P                  ++           + S   D    +        
Sbjct: 230 ---DPAANPPNVDLPYTDSNGITQNLNVTMDYTQLTNLGGDLSAAADPDGNTAG-SLESF 285

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           N+    ++   Y +       +  +A  +    L +   N   + +   S + ++++  +
Sbjct: 286 NIGSMGEINGVYSNGEITTIGYLALAKFSNPSGLTKAGGN--SFQQSVNSGTPNVNVAGE 343

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I         V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 344 G-RGTIVSGSLEMSNVDLSEEFTEMISAQRGFQANTRIITTSDEILQELVNLKR 396


>gi|262166282|ref|ZP_06034019.1| flagellar hook protein FlgE [Vibrio mimicus VM223]
 gi|262025998|gb|EEY44666.1| flagellar hook protein FlgE [Vibrio mimicus VM223]
          Length = 421

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/471 (9%), Positives = 110/471 (23%), Gaps = 66/471 (14%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVTQRSENKNMFDKVL 67
             +   NI NA+   +                        + V             +   
Sbjct: 3   LNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQ---QFHEGSS 59

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              ++ +  +     F A+ +                        SY    +++ L    
Sbjct: 60  IYTNNPLDLRIAGTGFFAVAKDKIVPQQNE---LTRNGAFHLDKNSYMVTANDEFLLGY- 115

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
                              ++  D+   +  E   +            A     A+    
Sbjct: 116 -------------------EVNPDSGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPAN 156

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
            +  D     +         ++    ++    Y      L +    +           T 
Sbjct: 157 GELKDPTLFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQPNTWQTYYTVTDKTG 216

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
           E     + G   S              +    D  +    N    +   L G  +  D  
Sbjct: 217 EKPINVVGGDATSPGGHVGHT------MRFNNDGTLASLNNGQPIVTEPLGGGTNPVDLN 270

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +                     Q +S ++    Q+ +     +     +        +
Sbjct: 271 GADV-------------------SQTLSFSLDSATQFAAPFELTKFDQDGATTGFLTKID 311

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                 ++  Y +  N       +  +     L +  +    W     S        ++ 
Sbjct: 312 FDENGSVLATYSNGQNTTLGRVALVRVANEQGLDK--KGGTQWDATQFSGDKIWGESNKG 369

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            F  IS        +++ +EL  LI  ++++  +++ +   + + Q +L+ 
Sbjct: 370 SFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQI 420


>gi|218704484|ref|YP_002412003.1| flagellar hook protein FlgE [Escherichia coli UMN026]
 gi|293404360|ref|ZP_06648354.1| flgE [Escherichia coli FVEC1412]
 gi|298380140|ref|ZP_06989745.1| flagellar hook protein FlgE [Escherichia coli FVEC1302]
 gi|300899595|ref|ZP_07117834.1| flagellar hook protein FlgE [Escherichia coli MS 198-1]
 gi|218431581|emb|CAR12460.1| flagellar hook protein [Escherichia coli UMN026]
 gi|291428946|gb|EFF01971.1| flgE [Escherichia coli FVEC1412]
 gi|298279838|gb|EFI21346.1| flagellar hook protein FlgE [Escherichia coli FVEC1302]
 gi|300356866|gb|EFJ72736.1| flagellar hook protein FlgE [Escherichia coli MS 198-1]
          Length = 401

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 107/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +     A+                      L   A  ++ S  
Sbjct: 202 KTGDNNWQVYTQDSSDPTGTADHAMT---------------------LVFNANGVLTSNP 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                            +    Q     + +    +  K   
Sbjct: 241 TANITTGAING--------------ADPATFSLSFLNSMQQNTGANNIVVTTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|121612241|ref|YP_999769.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157414368|ref|YP_001481624.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|167004743|ref|ZP_02270501.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249055|gb|EAQ72017.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157385332|gb|ABV51647.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747010|gb|ADN90280.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315931630|gb|EFV10595.1| flagella basal body rod family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 545

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D                +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S +            K          N+        R     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    T    A
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227
           IK             + +       +    +    +  +   +  T DG  +        
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240

Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|167574701|ref|ZP_02367575.1| flagellar hook protein flgE [Burkholderia oklahomensis C6786]
          Length = 395

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 115/474 (24%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N  + Q  +I  NI N     +                             
Sbjct: 2   SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANF---------------------- 39

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +   G Q       ++ + +        +     + ++      +K+    +L  
Sbjct: 40  ----ATMVAGAQPNGTYIGSITQNVGIGGSIMKTGRGLDAAIQQDGFFVTKDADGSLLYT 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            V                              ++       L +L V N     K +   
Sbjct: 96  RVGIFQRAADGYMVDGFGR------------RVQGYAANGVLGDLQVPNTVEPAKASDSI 143

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +    L     + +         T   ++    VY S G     T               
Sbjct: 144 EYAGNLSADWKVPKNPKFDKDDDTSFNHSVSTTVYDSLGRKHVVTQYFVKQPAPSTDIDT 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +   + G   +         GK+                                 
Sbjct: 204 YYAMDNELVGGATPAKQTLKFDENGKL--------------------------------- 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                    P   +A  +          ++       Q   + +   +  +         
Sbjct: 231 -------TEPTAPVALDLGTPAGAGKLVVNVNYTGVMQVGGDSTTTTNNQNGYAAGTPGE 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++    +++  Y +   +      +A   +   L         W     S +       
Sbjct: 284 PSIDEKGNVVVQYSNGQKRTVGTVALAAFASADGLTAVGD--TAWKASTASGNPLYGTPG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +F+ ++ +       ++  EL  ++  +++Y  ++K+I   ++M+Q+L++ +
Sbjct: 342 SGMFSKLATASLEMSNADVTRELVDMMSAQRNYQANSKVIATENQMMQSLMQAL 395


>gi|302387788|ref|YP_003823610.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1]
 gi|302198416|gb|ADL05987.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1]
          Length = 533

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/536 (9%), Positives = 134/536 (25%), Gaps = 67/536 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------------- 43
                         +   I  NI N +   Y                             
Sbjct: 4   SMFAGVAGLRTHQSKMDIIGNNIANVNTWGYKAASMSFKDTMYQTTSSSSGGSTKTGGYG 63

Query: 44  -TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-------- 94
            T + +    VT  S + +     +   ++ +        F  +  M++           
Sbjct: 64  GTNAGQVGYGVTTGSISYDFGKGGMAPSANGLDCMIDGTGFFIVGPMINGGSLPLGEEDA 123

Query: 95  -HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
              +      + K +     Y  + S + +             +F+T+A    KI   +D
Sbjct: 124 LKSSGLYLSRVGKFQVDGNGYLTDDSGNYVYGFTRTGDLTDSTSFDTTALTPLKIPTKSD 183

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI------ 207
                + +   +       + +A     A   +  +  D                     
Sbjct: 184 MSKVSDKNATDKIADAKKKLEEARALFNAMDAELGNARDAYIAANDNYKTKYTAAGVDTA 243

Query: 208 --------STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP-------- 251
                   + +       +    +     + + +  +++K NS  + +++N         
Sbjct: 244 KADMDAKKTAMDDAYRLWLEDKDNAAAKTDYLAKKTDYDKANSEFIVAQANVRKVTALAA 303

Query: 252 --IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
             +      V++   +        A                      +    S+ +  + 
Sbjct: 304 AKVTELNDAVTAYTTAYSAYIMSDASTDPNYETKKTAYTTAKAALDKIQTELSKIEDKSP 363

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN-- 367
                    + D            +          +++ + +  G + +   L  + N  
Sbjct: 364 EGLRDSAKQVVDAATAKLAAAKTAVENAEKTLTTAQNSATSIAVGNAGADDTLATLTNYK 423

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL---LEYARNSIGWLEKNRSDSHDLHMK 424
           +     ++    +          +AG+     L     Y                    +
Sbjct: 424 IQTDGTVVGTSEEGVTIVVGKIALAGVQNTGGLEKDSGYYYTLGANTGN------VSVYE 477

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  I  +Y     V+L  E++ +I  ++ +  ++K+I  TD+ML  L+   +
Sbjct: 478 GGGTDGRILGNYLEQAKVDLATEMTEMITTQRGFQANSKIITVTDQMLDELVNMKR 533


>gi|167567750|ref|ZP_02360666.1| flagellar hook protein flgE [Burkholderia oklahomensis EO147]
          Length = 395

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/474 (8%), Positives = 109/474 (22%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N  + Q  +I  NI N     +                             
Sbjct: 2   SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANF---------------------- 39

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +   G Q       ++ + +        +     + ++      +K+    +L  
Sbjct: 40  ----ATMVAGAQPNGTYIGSITQNVGIGGSIMKTGRGLDAAIQQDGFFVTKDADGSLLYT 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            V                                         +    N  +        
Sbjct: 96  RVGIFQRAADGYMVDGFGR----------------------RVQGYAANGVLGDLQVPNT 133

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                          +S    +    + + D                  ++    +S   
Sbjct: 134 VEPAKASDSIEYAGNLSADWKVPKNPKFDKDDDTSF----------NHSVSTTVYDSLGR 183

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                  F+     S++  +                          E+      +     
Sbjct: 184 KHVVTQYFVKQPAPSTDIDTYYAMDN--------------------ELVGDAAPAKQTLK 223

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                    P   +A  +          ++       Q   + S   +  +         
Sbjct: 224 FDENGKLTEPTAPVALDLGTPAGAGKLVVNVNYTGVMQVGGDSSTTTNNQNGYAAGTPGE 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++    +++  Y +   +      +A   +   L         W     S +       
Sbjct: 284 PSIDEKGNVVVQYSNGQKRTVGTVALAAFASADGLTAVGD--TAWKASTASGNPLYGTPG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +F+ ++ +       ++  EL  ++  +++Y  ++K+I   ++M+Q+L++ +
Sbjct: 342 SGMFSKLATASLEMSNADVTRELVDMMSAQRNYQANSKVIATENQMMQSLMQAL 395


>gi|86154050|ref|ZP_01072251.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842464|gb|EAQ59678.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 545

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D                +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S +            K          N+        R     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    T    A
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227
           IK             + +       +    +    +  +   +  T DG  +        
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240

Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGIAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|91210228|ref|YP_540214.1| flagellar hook protein FlgE [Escherichia coli UTI89]
 gi|117623262|ref|YP_852175.1| flagellar hook protein FlgE [Escherichia coli APEC O1]
 gi|215486285|ref|YP_002328716.1| flagellar hook protein FlgE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218557958|ref|YP_002390871.1| flagellar hook protein FlgE [Escherichia coli S88]
 gi|237706938|ref|ZP_04537419.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
 gi|312968850|ref|ZP_07783057.1| flagellar hook protein flgE [Escherichia coli 2362-75]
 gi|91071802|gb|ABE06683.1| flagellar biosynthesis, hook protein [Escherichia coli UTI89]
 gi|115512386|gb|ABJ00461.1| flagellar biosynthesis, hook protein FlgE [Escherichia coli APEC
           O1]
 gi|215264357|emb|CAS08714.1| flagellar hook protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218364727|emb|CAR02417.1| flagellar hook protein [Escherichia coli S88]
 gi|226898148|gb|EEH84407.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
 gi|294491293|gb|ADE90049.1| flagellar hook protein FlgE [Escherichia coli IHE3034]
 gi|307627454|gb|ADN71758.1| flagellar hook protein FlgE [Escherichia coli UM146]
 gi|312286252|gb|EFR14165.1| flagellar hook protein flgE [Escherichia coli 2362-75]
 gi|315287369|gb|EFU46780.1| flagellar hook protein FlgE [Escherichia coli MS 110-3]
 gi|323953238|gb|EGB49104.1| fagellar hook-basal body protein [Escherichia coli H252]
 gi|323957900|gb|EGB53612.1| fagellar hook-basal body protein [Escherichia coli H263]
          Length = 401

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +  +F    V++SN  + +  G I                              
Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|156976141|ref|YP_001447047.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116]
 gi|156527735|gb|ABU72820.1| hypothetical protein VIBHAR_04912 [Vibrio harveyi ATCC BAA-1116]
          Length = 399

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/474 (10%), Positives = 110/474 (23%), Gaps = 76/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             DH                 ++    +   L  
Sbjct: 59  NFDKNGSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFGTDKNNFVTANNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +DN   +              +  +  +I++  S+L    ++             +  
Sbjct: 119 YSVDNNANL--------------QTGSVGDIKVSTSSLNAKATDNLDFVANFDASATAVD 164

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A    D  D      S    +                   L  +      F K +    
Sbjct: 165 QAIYPFDSSDPNSFNSSYTTKVYDS----------------LGNSHTVTQYFTKTSDNEW 208

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                         ++        G + +     +   P                     
Sbjct: 209 QVNVEVDGAPTTPATAQTVQFNTDGTLASPTGSFNVAFPAA------------------- 249

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I  ++  + Q+ +      +  +         
Sbjct: 250 ----------------------GANAMSIDISLNGSTQFGAAFGVSTNNPNGYTSGELAG 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L +   +   W +   S +  + +  
Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKV--SGTAWTQSFSSGAPIMGVPG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++        V+L  EL  L+  +++Y  + K I   DK+ Q L   V
Sbjct: 346 TGTLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399


>gi|28952050|ref|NP_240159.2| flagellar hook protein FlgE [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681699|ref|YP_002468085.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471395|ref|ZP_05635394.1| flagellar hook protein FlgE [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624542|gb|ACL30697.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086078|gb|ADP66160.1| flagellar hook protein FlgE [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086649|gb|ADP66730.1| flagellar hook protein FlgE [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087235|gb|ADP67315.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087754|gb|ADP67833.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 408

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 115/478 (24%), Gaps = 83/478 (17%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDT--------MTTISPENVTVVTQRSENK 60
            A +     +     I  NI NA    Y  R              +  N   V   S  +
Sbjct: 5   IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N  + +L      +    +   F  L +         +       +     +    N+  
Sbjct: 65  NFNNGMLVETGRDLDLGIIKDGFFRLVD------SQGHVYYTRDGQFFLDKDQNIINIQG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L       ++    N +                           L  + + N  I   
Sbjct: 119 MYLTGLNTSCSKSDFNNRSN--------------------------LEPINLKNSNILKN 152

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +          R+   +   +          +    +   +     E +    N ++ 
Sbjct: 153 KPTSEIMLKAFLNRNTESKSSVDNSDNKLSKPEDYMTYISIYNKEGKKEDITVSFNKKET 212

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           N +TV  ESN       + +S   +    G++                            
Sbjct: 213 NKWTVNVESNDSDDKETIKNSFDLTFNDDGEL---------------------------- 244

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                             + +       K             Q  S+ S+     +   +
Sbjct: 245 --------------TSDNVFNITSKDSKKYENITLNLTGTIEQSNSDVSWEEHSQNGYPQ 290

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++    ++I  YC+   +      ++       L   + N          ++  
Sbjct: 291 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATA-ESGEAKT 349

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +S        V+L +EL  +I  +++Y  + +     DK++ TL+  
Sbjct: 350 AMKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLINL 407


>gi|324113871|gb|EGC07845.1| fagellar hook-basal body protein [Escherichia fergusonii B253]
 gi|325497616|gb|EGC95475.1| flagellar hook protein FlgE [Escherichia fergusonii ECD227]
          Length = 401

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 106/473 (22%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      I+  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDIAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        +              N        +  
Sbjct: 97  NGQFKLDENRNLVNMQGLQLTGYPAAGTPPTIQQ------------GANPTNISIPNTLM 144

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A         +    S+ +        +N          T+F++     +       T 
Sbjct: 145 AAKTTTTAAMQINLNSSDPLPTVKAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTK 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +                                       Q+  D  ++    +  E +
Sbjct: 205 DNTWQVYT---------------------------------QDSSDAASKATAATTLEFN 231

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                 +          I              +    Q     + +    +  K      
Sbjct: 232 ANGMLVKGETANITTGAINGAVPAT--FSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQASGVALLGTAG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|295678051|ref|YP_003606575.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1002]
 gi|295437894|gb|ADG17064.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1002]
          Length = 664

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 124/411 (30%), Gaps = 18/411 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVV 53
             + N   +  N A     +   NI NA    Y     + +               V+  
Sbjct: 3   SNLLNIGLSGLNAAQWGLTTTGENISNASTPGYTMETPVFSEVGGNYTGSGYLPMGVSTD 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T            L+   S         +  +    +             IS     L++
Sbjct: 63  TVTRAYSQYLTTELNTAQSWSSSLGTYNTMISQLNNLVGSPT--GGIASAISGYFTGLQN 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + S     +T I  A+ +    N + ++  ++RA  + ++   ++ +  F +++  +
Sbjct: 121 VANDASSVSTRQTAISAAQTLANQINAAGQQYDQLRASVNTQLSDAVTQINTFTAQIASL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I   ++     +  LDQRD+ +  +S++IG+S + ++N    ++ S+G  L      
Sbjct: 181 NTQITQASSQGQPPNQLLDQRDLAVSNLSQLIGVSVV-QDNGSYSLFMSNGQPLVLAGNS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +S   +                   +   ++V  G +  LLQ R   +   + 
Sbjct: 240 FNLGTATSSGDPSELSVQYLGQAGAKATPTPQTLSDTSVSGGTLGGLLQFRSQTLDPAEA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +A       + ++ +        G  +            Q             ++ 
Sbjct: 300 QLGAIATSFAAQVNAQNELGLTLNGTAGGALFTVGSPTVYANSQNSGTATLGVSFANASQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               D         + + +      + +    +     +   VA    N  
Sbjct: 360 PTTGDYTLSYNGSAYTLTDNQTGSIVGSAADLTNPIGGLQFSVASGTMNAG 410



 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/427 (8%), Positives = 98/427 (22%), Gaps = 19/427 (4%)

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            L   +S+     L   +       +       S T         L  +     +    +
Sbjct: 241 NLGTATSSGDPSELSVQYLGQAGAKATPTPQTLSDTSVSGGTLGGLLQFRSQTLDPAEAQ 300

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                   +  +F        ++    +      +  +          N        S  
Sbjct: 301 -----LGAIATSFAAQVNAQNELGLTLNGTAGGALFTVGSPTVYANSQNSGTATLGVSFA 355

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +A         L    S          +        ++     +           +S+TV
Sbjct: 356 NASQPTTGDYTLSYNGSAYTLTDNQTGSIVGSAADLTNPIGGLQFSVASGTMNAGDSFTV 415

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                 +    +  ++    A     + +          I Q  +         + +   
Sbjct: 416 EPTRGALNGFALTTTAASAIAAAAPVLASASTSNTGSATITQGTVSAGYSAPTSTSTITY 475

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL--- 362
                    P   +               +               + +  + +   +   
Sbjct: 476 TAGTGLTGFPIGSVVTVAGSPSTSYTINTATDAVPYSPNSGATLTITNPTNSTSAGVMNN 535

Query: 363 -----------WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       +   +       N   ++   + +           TL     + +  +
Sbjct: 536 VTVTISGTPADGDSFTIGPNTGATNDGRNAQLLSNLTKAQVLAGGTATLTNAYASYVNNI 595

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               +    +      +   I+ +  +  GVN+ EE + L++ +Q Y  ++K+I     +
Sbjct: 596 GNQATQIQAMATTQTSLVTQITSAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTL 655

Query: 472 LQTLLEG 478
            QTLL  
Sbjct: 656 FQTLLGI 662


>gi|86149558|ref|ZP_01067788.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839826|gb|EAQ57085.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 545

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D                +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S +            K          N+        R     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    T    A
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227
           IK             + +       +    +    +  +   +  T DG  +        
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240

Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVFTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|16129039|ref|NP_415594.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89107922|ref|AP_001702.1| flagellar hook protein [Escherichia coli str. K-12 substr. W3110]
 gi|170080727|ref|YP_001730047.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188492271|ref|ZP_02999541.1| flagellar hook protein FlgE [Escherichia coli 53638]
 gi|238900330|ref|YP_002926126.1| flagellar hook protein [Escherichia coli BW2952]
 gi|256023226|ref|ZP_05437091.1| flagellar hook protein FlgE [Escherichia sp. 4_1_40B]
 gi|300950171|ref|ZP_07164116.1| flagellar hook protein FlgE [Escherichia coli MS 116-1]
 gi|300954384|ref|ZP_07166838.1| flagellar hook protein FlgE [Escherichia coli MS 175-1]
 gi|301029709|ref|ZP_07192763.1| flagellar hook protein FlgE [Escherichia coli MS 196-1]
 gi|301644988|ref|ZP_07244954.1| flagellar hook protein FlgE [Escherichia coli MS 146-1]
 gi|307137711|ref|ZP_07497067.1| flagellar hook protein FlgE [Escherichia coli H736]
 gi|331641620|ref|ZP_08342755.1| flagellar hook protein FlgE [Escherichia coli H736]
 gi|2494529|sp|P75937|FLGE_ECOLI RecName: Full=Flagellar hook protein flgE
 gi|1787316|gb|AAC74160.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655]
 gi|85674830|dbj|BAA35885.2| flagellar hook protein [Escherichia coli str. K12 substr. W3110]
 gi|169888562|gb|ACB02269.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188487470|gb|EDU62573.1| flagellar hook protein FlgE [Escherichia coli 53638]
 gi|238861108|gb|ACR63106.1| flagellar hook protein [Escherichia coli BW2952]
 gi|260449784|gb|ACX40206.1| flagellar basal body FlaE domain protein [Escherichia coli DH1]
 gi|299877397|gb|EFI85608.1| flagellar hook protein FlgE [Escherichia coli MS 196-1]
 gi|300318620|gb|EFJ68404.1| flagellar hook protein FlgE [Escherichia coli MS 175-1]
 gi|300450518|gb|EFK14138.1| flagellar hook protein FlgE [Escherichia coli MS 116-1]
 gi|301076717|gb|EFK91523.1| flagellar hook protein FlgE [Escherichia coli MS 146-1]
 gi|309701348|emb|CBJ00649.1| flagellar hook protein FlgE [Escherichia coli ETEC H10407]
 gi|315135708|dbj|BAJ42867.1| flagellar hook protein FlgE [Escherichia coli DH1]
 gi|315618246|gb|EFU98836.1| flagellar hook protein flgE [Escherichia coli 3431]
 gi|323937816|gb|EGB34080.1| fagellar hook-basal body protein [Escherichia coli E1520]
 gi|323942545|gb|EGB38712.1| fagellar hook-basal body protein [Escherichia coli E482]
 gi|331038418|gb|EGI10638.1| flagellar hook protein FlgE [Escherichia coli H736]
 gi|332342622|gb|AEE55956.1| flagellar hook protein FlgE [Escherichia coli UMNK88]
          Length = 402

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|307310146|ref|ZP_07589796.1| fagellar hook-basal body protein [Escherichia coli W]
 gi|306909864|gb|EFN40358.1| fagellar hook-basal body protein [Escherichia coli W]
 gi|315060354|gb|ADT74681.1| flagellar hook protein [Escherichia coli W]
 gi|320200972|gb|EFW75556.1| Flagellar hook protein FlgE [Escherichia coli EC4100B]
 gi|323379085|gb|ADX51353.1| fagellar hook-basal body protein [Escherichia coli KO11]
          Length = 402

 Score =  107 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                            +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|331662482|ref|ZP_08363405.1| flagellar hook protein FlgE [Escherichia coli TA143]
 gi|284920899|emb|CBG33962.1| flagellar hook protein FlgE [Escherichia coli 042]
 gi|331060904|gb|EGI32868.1| flagellar hook protein FlgE [Escherichia coli TA143]
          Length = 402

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKATTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                            +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|225375330|ref|ZP_03752551.1| hypothetical protein ROSEINA2194_00955 [Roseburia inulinivorans DSM
           16841]
 gi|225212819|gb|EEG95173.1| hypothetical protein ROSEINA2194_00955 [Roseburia inulinivorans DSM
           16841]
          Length = 550

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/550 (7%), Positives = 115/550 (20%), Gaps = 72/550 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------ISP 47
           ++     A +       +   I  NI N +   +       +                + 
Sbjct: 1   MMRSMYSAVSGLKTHQTRMDVIGNNIANVNTVAFKSSSVTFSDILYQTTSNASGANATTG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE----MMSADDHYNNSPTHY 103
                  Q           +   S+   +         L +         ++ + +    
Sbjct: 61  TGGVNAKQIGLGTTAAATKVSITSAGASETTGNPFDIRLTDKNSTNFFIVNNGSENVFTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-- 161
                          S          +        +T +        +     E      
Sbjct: 121 SGSFYVDGSGNLCMSSTGYTVMGWQVDETTGEIRKDTVSALRIMQEKNLTSAPEATTQAT 180

Query: 162 ----------------------NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
                                 N    L        AIK          +     D   +
Sbjct: 181 IAGVLDENDTDVKNDAGRVMNLNFYDNLGYQYTAKFAIKSTGTDGKYTVELTSVLDSNNK 240

Query: 200 ----KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
                +++          + +  +     +  ++    D  +E          +    + 
Sbjct: 241 NIIADLNKQQIAQIFGNYDANATLGQYSLSKDYKYNDADQTYEDSTGKKFKPSATDSTVF 300

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
               +     ++          I ++V     N           +    +  + + E   
Sbjct: 301 EEQGNPTNKVSITDIFSGITTTIANNVKNNTNNYQLAFDAQTGHATLTGEQTSYDLEFDT 360

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                  I   +  +   ++           N   +    S    +    K+  G     
Sbjct: 361 SSGKFKSIGGENPSVMLNMAALSSGLINTNGNFQNITVDFSQCLNYENGGKSTIGADAGA 420

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS---------- 425
                   +         I+T+  +     N    L    + +   +             
Sbjct: 421 VDGTTGKGRKLGAMTGIFIDTSGRIYGTYDNGNTELLGQIAVAQFSNASGLEKVGESCYR 480

Query: 426 ---------------QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                              + ++        V+L  E + +I  ++ +  ++++I  +D 
Sbjct: 481 TTLNSGEFDGIGVEISADGSSMTTGELEMSNVDLSSEFTSMITTQRGFQANSRVITTSDT 540

Query: 471 MLQTLLEGVK 480
           +L+ L+   +
Sbjct: 541 LLEELVNLKR 550


>gi|57237057|ref|YP_178069.1| flagellar hook protein [Campylobacter jejuni RM1221]
 gi|88597731|ref|ZP_01100964.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|205356434|ref|ZP_03223198.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218561735|ref|YP_002343514.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|57165861|gb|AAW34640.1| flagellar hook protein [Campylobacter jejuni RM1221]
 gi|88190035|gb|EAQ94011.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359441|emb|CAL34223.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|205345621|gb|EDZ32260.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315929148|gb|EFV08373.1| flagella basal body rod family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 545

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D                +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S +            K          N+        R     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    T    A
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227
           IK             + +       +    +    +  +   +  T DG  +        
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240

Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|153831673|ref|ZP_01984340.1| flagellar hook protein FlgE [Vibrio harveyi HY01]
 gi|269960116|ref|ZP_06174492.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3]
 gi|148872183|gb|EDL71000.1| flagellar hook protein FlgE [Vibrio harveyi HY01]
 gi|269835087|gb|EEZ89170.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3]
          Length = 399

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/474 (10%), Positives = 110/474 (23%), Gaps = 76/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             DH                 ++    +   L  
Sbjct: 59  NFDKNGSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFGTDKNNFVTANNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +DN   +              +  +  +I++  S+L    ++             +  
Sbjct: 119 YSVDNNANL--------------QTGSVGDIKVSTSSLNAKATDNLDFVANFDASATAVD 164

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A    D  D      S    +                   L  +      F K +    
Sbjct: 165 QAVYPFDSSDPNSFNSSYTTKVYDS----------------LGNSHTVTQYFTKTSDNEW 208

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                         ++        G + +     +   P                     
Sbjct: 209 QVNVEVDGAPTTPATAQTVQFNTDGTLASPTGSFNVAFPAA------------------- 249

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I  ++  + Q+ +      +  +         
Sbjct: 250 ----------------------GANAMSIDISLNGSTQFGAAFGVSTNNPNGYTSGELAG 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L +   +   W +   S +  + +  
Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKV--SGTAWTQSFSSGAPIMGVPG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++        V+L  EL  L+  +++Y  + K I   DK+ Q L   V
Sbjct: 346 TGTLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399


>gi|302387756|ref|YP_003823578.1| flagellar hook-associated protein FlgK [Clostridium saccharolyticum
           WM1]
 gi|302198384|gb|ADL05955.1| flagellar hook-associated protein FlgK [Clostridium saccharolyticum
           WM1]
          Length = 680

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/481 (12%), Positives = 133/481 (27%), Gaps = 59/481 (12%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           S  + F  AQ   + + +      +NI N + K Y ++                      
Sbjct: 4   STFSGFTIAQLAMSASQRALDVTGQNIANINTKGYTKQQLDLVSLNLRGGEVVSTGPASK 63

Query: 47  -PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V +           D       + +G     Q        +  +   +      +S
Sbjct: 64  IGYGVEITGISQIRDPFLDVQYRNQIAKVGTADAHQGTLDQLADIFDETDKDA-LKKALS 122

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-ISNLR 164
            L  SL+  S N +       V    + ++   +  + E+  +R +    +E   I  + 
Sbjct: 123 DLSSSLDKLSSNANNGEFDSIVRSRCQVLLNYIHQKSSELTSVREETISGLEKTDIPTVN 182

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             LS++  +NDAI       + A +  DQR++ L +++  + IS   +            
Sbjct: 183 GLLSDIGELNDAIWKSQVLGNPALELQDQRNLKLDELASYLPISVSYKEVTISSDTRLSY 242

Query: 225 TTL----------------FETVPRDINFEKMNSYTVTSESN-----------PIFIDGV 257
             +                       ++ E+          +           P   D  
Sbjct: 243 PVVKFIGSDGMTYNLTAGEHGENTASLSSERNKGIDGNYNGHISISLIPASDFPSNTDVS 302

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSV------------VPIFQNQLDEMARVLIGSFSEKD 305
            + ++    + +G +K L+ + +              +  ++   D   +    +F++ +
Sbjct: 303 PLKTDITGYLKEGSLKGLVDVLNKSGELDNPATDYRGIGYYEKSFDAFVQTFAETFNKLN 362

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVSKKFLW 363
                   V G+      K+L +   +    +I       +  N   +   G        
Sbjct: 363 TNTFPYTGVTGVPANGVPKELTSTGSEKAEYSISFLNSTGNFLNKEKININGQTYTFGDG 422

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
               +   P L        +K     P   +N   T   +   +        S +     
Sbjct: 423 TGGTVEIGPSLEGSLVKLVDKLNTDAPNMTVNGASTPGSWNYQASTGKLIWTSTAPLTAG 482

Query: 424 K 424
            
Sbjct: 483 T 483



 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/417 (10%), Positives = 109/417 (26%), Gaps = 15/417 (3%)

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
           +  S +  + + +         +S     +      +S L+  +  Y K  S   L   +
Sbjct: 265 NTASLSSERNKGIDGNYNGHISISLIPASDFPSNTDVSPLKTDITGYLKEGSLKGLVDVL 324

Query: 128 IDNAE-EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             + E +            +K      +      + L       T V          +  
Sbjct: 325 NKSGELDNPATDYRGIGYYEKSFDAFVQTFAETFNKLNTNTFPYTGVTGVPANGVPKELT 384

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE-KMNSYTV 245
           +         +    S    ++    N N       DGT     +   +          +
Sbjct: 385 STGSEKAEYSISFLNSTGNFLNKEKININGQTYTFGDGTGGTVEIGPSLEGSLVKLVDKL 444

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +++  + ++G     +       GK+        +                     +  
Sbjct: 445 NTDAPNMTVNGASTPGSWNYQASTGKLIWTSTAPLTAGTE--------INSTSIQAGDGT 496

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +   +  P       +    +      +  I ++  + +N   +      +     N 
Sbjct: 497 KFSLTYKADPLNIKNFDLFKTSDGSKIFTASNIKISDDWMNNTIHIISSHDENAGSTAND 556

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-----LLEYARNSIGWLEKNRSDSHD 420
             +     L       +   +           +T       +   N       + S +  
Sbjct: 557 NIIRMIKSLTEERDFKYEYTYKDKNGIPQTGTITYYNGNFSQCYSNLENIQGIDSSANKA 616

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      V    + S     GV+L EE   L++ ++SY  + +L+   D++L  L+ 
Sbjct: 617 ILSNHISVLKQTANSKDAVSGVSLDEEGINLMQFQRSYTAAARLMTTLDEVLNVLIN 673


>gi|157373207|ref|YP_001471807.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3]
 gi|157315581|gb|ABV34679.1| flagellar basal body FlaE [Shewanella sediminis HAW-EB3]
          Length = 398

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/474 (10%), Positives = 119/474 (25%), Gaps = 77/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI N+    Y    +  +              +     +
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANSSTVGYRGGRSEFSAVYNGGQAGGVNVMS---TSQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S +   R L                 ++            + Y  + + + L  
Sbjct: 59  NFSMGGSLVYTGRELDMGIQGDGFFVLSGQDGSTLYSRAGMFSQDADGYITDPAGNRLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +    ++     +   ++Q        +   ++  +    + +  +            
Sbjct: 119 YPVGAGGQLQTGNVS---DLQVQSGSLPAKATTDVGVVSNLDASMEPI-----------D 164

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 D  D+     S  + +   + N + +  Y                     + + 
Sbjct: 165 QTTTPFDPDDISSYHSSGTVAVYDSLGNEHALTQYY-----------------VKTNDSP 207

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           +  +    +DG  V +N+     KG +     +  ++                       
Sbjct: 208 SEWNVHYMMDGKDVGTNKLEFDDKGALTGGENVTLNLGTP-------------------- 247

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       +  +   + QY S+ S      +       N 
Sbjct: 248 ---------------------GGAAPMSLDLSYKNSTQYASDYSNSSLTQNGYTSGELNG 286

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     +   Y +   +      +A  N    L     ++  W   N +    +   +
Sbjct: 287 VRLDDNGMVYGTYTNGQEQIQGQVVLADFNNPNGLTPV--SNNAWAATNAAGQPIVGAPT 344

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +S  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 345 TGTLGSVSGGYLEGSNVDTTAEMVSLMTAQRNYQSNAKVLDANSTMQQALLNAI 398


>gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301]
          Length = 642

 Score =  107 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 105/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 242 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 301

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N     
Sbjct: 302 TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 355

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +                +Q+     +  I   +   +   +    +N        
Sbjct: 356 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 399

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 400 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 441

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 442 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 481

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 482 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 527

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +  +   +      +A    N  L     N   W     S    L 
Sbjct: 528 LVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 585

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L T +  
Sbjct: 586 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 641


>gi|311280017|ref|YP_003942248.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1]
 gi|308749212|gb|ADO48964.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1]
          Length = 402

 Score =  107 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 106/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D        A+        F  L       D   +       + +        N+    
Sbjct: 62  TDGTTTNTGRALDVAISQNGFFRLV------DSNGSVYYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                                                           
Sbjct: 116 LTGYPATGT----------------------------------------------PPTIQ 129

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +         ++  K +    +   + + +     T    T  ++  +  +    +S
Sbjct: 130 QGANPVALNVPNTLMAAKTTTTAAMQINLNSTDKTPTVTPFDATKADSYNKKGSVTVYDS 189

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                + N  F+     + +  +        +      ++       L     V I +  
Sbjct: 190 QGNAHDMNVYFVKSADNTWDVYTQDSSTNAVSPTTPSTTLTFDTNGNLLSGGTVNITT-- 247

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                   Q   + + +    +  K   
Sbjct: 248 --------------------GTVNGATPATFALSFANSMQQNTGSNNIVATNQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLQSEGDNV--WSATKSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|167835119|ref|ZP_02462002.1| flagellar hook-associated protein FlgK [Burkholderia thailandensis
           MSMB43]
          Length = 667

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 125/410 (30%), Gaps = 18/410 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVV 53
             + N   +  N A     +  +NI NA    Y     +   +          P+ V+ V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +        L+A  +         +  A                  I+     L++
Sbjct: 63  TVQRQYNQYLSDQLNAAQTQGNALSTYYTLVAQLNNYVGSPTA--GIATAITNYFTGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N ++    +T + NA+ +      ++++  ++R   + ++   +  +  + S++  +
Sbjct: 121 VANNAADPSARQTAMSNAQTLASQLVAASQQYSQLRQSVNSQLTDSVKQINSYTSQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N+ I   ++     +  LDQRD+ +  +S++ G+  + ++N    V+ + G  L      
Sbjct: 181 NEQIASASSQGQPPNQLLDQRDLAVSNLSQLAGVQVV-QSNGSYSVFLAGGQPLVVGNMS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S                 +++  G +  LL  R   +   Q 
Sbjct: 240 YQLAAVASKSDPSELTIVSNGIAGANPQGSPQYLPDASLSGGTLGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +A       + ++ +  +    PG  +               S             
Sbjct: 300 QLGALAVSFASQVNAQNALGVDMSGNPGGNLFAVGSPTVYANQGNTSGATLTASIADGTQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
               D         + + + A    +      S         +    T+ 
Sbjct: 360 PPSSDYSLSYDGSKYTLTDRATGSVVGTATSTSTPPTMTIGGLNLSLTST 409



 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 77/257 (29%), Gaps = 4/257 (1%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  T+  T      F    +      +    +     +++   A+ +G + A  Q+   
Sbjct: 413 GDAFTVLPTRGALEGFALATANGSAIAAASPVLAAAAPTNSGTGAISQGSVSAGYQLPSG 472

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
              +  N   +         +        +             D        IS T    
Sbjct: 473 TTTLTYNASSKTLSGFPVGTTVTIAGTPPTSIDITSATTPVPYDPSKGASMTISSTTQPA 532

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
           P    N   +   G+ +    + +    G  D      ++   + + +     N   TL 
Sbjct: 533 PSGVMNGVSVSLSGTPADGDQFTIGANKGTNDG----RNALALSQLVNSKTMNNGTATLT 588

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
                 +  +    S           +   I+++  +  GVN  EE + L++ +Q Y  +
Sbjct: 589 GAYAGYVNAIGNAASQLKASSAAQTALVGQITQAQQSVSGVNQNEEAANLMQYQQLYQAN 648

Query: 462 NKLIMFTDKMLQTLLEG 478
            K+I   + + QT+L  
Sbjct: 649 AKVIQTANSVFQTVLGL 665


>gi|332088750|gb|EGI93862.1| flagellar hook protein flgE [Shigella boydii 5216-82]
          Length = 401

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 109/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLYVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +     A+                      L   A  ++ S  
Sbjct: 202 KTGDNNWEVYTQDSSDPTDTADRAMT---------------------LVFNANGVLTSNP 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            ++   G                   +        +    Q     + +    +  K   
Sbjct: 241 TENITTGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|148926857|ref|ZP_01810535.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844434|gb|EDK21542.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 545

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/545 (10%), Positives = 135/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D                +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S +            K          N+        R     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN-------------- 162
           +   + +  T+      +  +   +      +           +++              
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180

Query: 163 ----LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--------------SEI 204
               +  +L      N        +           D     I              S+ 
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240

Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
              S    +   +     +G  T+   T+  ++NF+         + N I +D   +S+ 
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNEFDLKGLDENSIKLDTAQISTE 300

Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|318604252|emb|CBY25750.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 397

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/472 (11%), Positives = 115/472 (24%), Gaps = 78/472 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A    +  ++Q  +I  NI N+  K +    T                        
Sbjct: 2   SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMY------------------ 43

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              A S  +G      S    K+                +           +  ++   +
Sbjct: 44  ---AQSQPLGVGVSGTSQSIKKDGSIDRTGNAMDLAISGNGFFV----VKNSSGDEAYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +   ++     N S  ++Q   ADA   ++  I               +    +    
Sbjct: 97  AGMFTTDKNGVLVNASGMKLQGYPADAAGNVQTGI--------------VSDLKISTVGL 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A        +     S     +      +         +T ++++ R+    +      
Sbjct: 143 PAKATSKLGFMANLPASAKQPTNATFSIGSKDSYNFMSTSTTYDSLGREHLLTQYFVKQA 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +    +                           D       + L      ++ S + K 
Sbjct: 203 GAGDWKV-----------------------HYAVDGAANSGAHDLKFDTSGVLTSGNSKT 239

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                       GI  T     Q+ +                 N 
Sbjct: 240 ITGG--------------YTPVGADNYGIDITYTGTTQFHAEFLPAPSKSDGYTAGTKNG 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           + +     +   + +          +A       L    +N   W   +RS +  L    
Sbjct: 286 ERIENDGSVYATFSNGKQMLQGKLVLANFANPNGL--ATQNGTTWSVTSRSGAPLLGSPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             +  +I         V+L  EL  L+  +++Y  + K+I   D M+  L +
Sbjct: 344 TGLLGNIVAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 395


>gi|88811801|ref|ZP_01127055.1| flagellar hook protein [Nitrococcus mobilis Nb-231]
 gi|88791192|gb|EAR22305.1| flagellar hook protein [Nitrococcus mobilis Nb-231]
          Length = 400

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/473 (9%), Positives = 101/473 (21%), Gaps = 75/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F  A    N AS        N+ N+    +               V T +         
Sbjct: 2   SFETALTGLNAASADLDVTGNNVANSATTGFKSSRAEFADIYALSNVGTAQ--------- 52

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                                                   +       ++ N  +  +  
Sbjct: 53  --------------------------TSIGQGVRLAAVTQQFTQGQFDFTGNTLDLAVNG 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T             +     Q  R     + +    N  +  S   +       +    +
Sbjct: 87  TGFFALNANGTTAYSRNGAFQLDRDGFIVDADGHRLNGYQAGSNGAISGALGDLQVNIGN 146

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A        +     +    I T     +      S  TT+++   +D           
Sbjct: 147 VAPQATANIGLSANLDARAATIPTAFDAADPATYNFSTSTTVYDAQGKDHFATLYFQKQS 206

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +          +   + V        +    +                        
Sbjct: 207 DNVWDIYADGDDGTGAKDPATVTFDSRGEFVSATGATT---------------------- 244

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                              +        IS       QY S                +  
Sbjct: 245 ----------------YSFNYAGAGTSNISVDYSSLTQYGSVFDVKELSQDGFSTGQFTN 288

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     L+  + +  ++      ++   +  +L +       W E   S +       
Sbjct: 289 LGVEDDGRLLARFTNGQSQTLGQIALSRFPSPQSLQQIGD--THWAETFASGAPVTAAPG 346

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 I         VNL E+L  +I  ++++  ++++I   D++ Q++L  
Sbjct: 347 SSGVGTIQGGALEKSNVNLTEQLVHMITAQRNFQANSQMISTQDQITQSILNI 399


>gi|320173529|gb|EFW48725.1| Flagellar hook protein FlgE [Shigella dysenteriae CDC 74-1112]
          Length = 402

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 107/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +S   +A                                    
Sbjct: 202 KTGDNNWQVYTQDSSDPNSIAKTATT---------------------------------- 227

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +    G   N               +        +    Q     + +    +  K   
Sbjct: 228 LEFNANGTLVNGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIVATPQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFATLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|167585200|ref|ZP_02377588.1| flagellar hook-associated protein FlgK [Burkholderia ubonensis Bu]
          Length = 656

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/408 (12%), Positives = 121/408 (29%), Gaps = 18/408 (4%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQR 56
            N   +  N A     +   NI NA    Y     +   +          P+ V  VT +
Sbjct: 1   MNLGISGLNAAIWGLTTTSNNIANAATPGYTIERPVYAEASGQYTGSGYLPQGVNTVTVQ 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            +        L++  +  G      +  A               +  I+     L++ + 
Sbjct: 61  RQYSQYLSDQLNSAQTQGGALSTWNTLVAQLNNYVGSPTA--GISTAITNYFTGLQNVAN 118

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             ++  + +T + NA+ +      +  +   +R   + ++   ++ +  + +++  +N  
Sbjct: 119 KAADTSVRQTAMSNAQVLADQLKAAGAQYDALRQSVNTQLSATVAQINTYTTQIAQLNQQ 178

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I    +     +  +DQRD  +  +S + GI  + RN+    V+ + G  L         
Sbjct: 179 IATAGSQGQPPNQLMDQRDQAVSNLSSLAGIQVV-RNDQGYSVFMAGGQPLVVADKSYTL 237

Query: 237 FEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
               +S   +     S+            +   +++  G +  LL  R   +   Q QL 
Sbjct: 238 AAVTSSSDPSELTIVSQGIAGANPPGPNQALPDASLSGGTLGGLLAFRRQTLDPAQAQLG 297

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A       + ++ +  +    PG  +                           +    
Sbjct: 298 AIATSFAAQVNAQNALGVDLSGNPGGNLFSTGSPTVFANQANTGNATLNVSFANPSQPTT 357

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            D         + + + A    +        +   +    +    N  
Sbjct: 358 SDYSLSYDGAKYTLTDRANGSVVGTSTSMPGSIGGLNFSFSSGTMNAG 405



 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/425 (9%), Positives = 98/425 (23%), Gaps = 5/425 (1%)

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +K+     + + S       + Q               + S +        +    + +
Sbjct: 231 ADKSYTLAAVTSSSDPSELTIVSQGIAGANPPGPNQALPDASLSGGTLGGLLAFRRQTLD 290

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            ++  LG      A   V   N    ++                   +  +    +N + 
Sbjct: 291 PAQAQLGAIATSFA-AQVNAQNALGVDLSGNPGGNLFSTGSPTVFANQANTGNATLNVSF 349

Query: 178 KFKTASKHDAHDFLDQRDVL----LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
              +      +                 S +   +++  +   +    S GT        
Sbjct: 350 ANPSQPTTSDYSLSYDGAKYTLTDRANGSVVGTSTSMPGSIGGLNFSFSSGTMNAGDSFT 409

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +           + +N   I      +   S    G  K       +   I        
Sbjct: 410 VLPTRGALGGFSLATANGSAIAAASPVAVSASGTNTGTGKITQGAVTAGYQIPAGGTTLT 469

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 + S        +                       +          +       
Sbjct: 470 YDATTNTLSGFPAGTTVTIAGTPPTTVPIAGPTTAVPYTPATGATMTMTGTAAGAINGVT 529

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +   +  Y    +   ++   + +       N   TL     N +  +  
Sbjct: 530 ITLSGTPSTGDTFKIGPYSGGTSDGSNALALSQLVTAKTLGNGTTTLTGAYANYVNGIGN 589

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S     +     +   I+++     GVN  EE + L++ +Q Y  + K+I     + Q
Sbjct: 590 TASQLKSSNAAQTALVGQITKAQQEVSGVNQNEEAANLMQYQQLYQANAKVIQTASTLFQ 649

Query: 474 TLLEG 478
           T+L  
Sbjct: 650 TVLGL 654


>gi|261856360|ref|YP_003263643.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus
           c2]
 gi|261836829|gb|ACX96596.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus
           c2]
          Length = 418

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/483 (9%), Positives = 109/483 (22%), Gaps = 77/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55
            FN +    N A +       NI NA++  +                          V  
Sbjct: 2   SFNTSITGLNAAQKDLDVTSNNIANANSTGFKSSRAQFGDIYAVSAYGNSKTATGQGVLT 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      L   ++++      Q F               S       L  + + + 
Sbjct: 62  EAVQQQFTQGSLQFTNNSLDLAISGQGFF----TFQPTLDSLQSVYSRAGALGANKDGFI 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +   L    +     +      SA+ +Q   A    +    ++      +  TV   
Sbjct: 118 VNTNGQYLKALPVSANGTLQSTSLASAKPIQLPVAAGAPKATTLVTQSFNLPASATVP-- 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                                       +    T     +      ++   +++++    
Sbjct: 176 ---------------------------TVTPFDTTQATPDPASYTQANSQQVYDSLGNTH 208

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                   T       ++                                +Q       +
Sbjct: 209 TLTSYYVKTANPNEWNVY--------------------------------YQVDTQTPIQ 236

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                  + +     +     +                  +T   + QY +  +      
Sbjct: 237 GPSTLTFDANGQLPTTPAPFAVTATAASLGTGAAPLNINVQTQGDSTQYNAPFNMAAQSQ 296

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +        ++     +   Y +  N       +A  +    L +   N   W E   
Sbjct: 297 DGNTTGQLTGVSVGSNGLIQASYSNGQNIPLGMVALANFSNPQGLKQVGNN--SWAESVD 354

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +          F  I         V+L ++L  LI  ++++  + + I        ++
Sbjct: 355 SGAPTAGQPGTGTFGLIQGGALEQSNVDLTQQLVNLITAQRNFQANAQAIQTDKTATDSV 414

Query: 476 LEG 478
           +  
Sbjct: 415 INI 417


>gi|228964720|ref|ZP_04125827.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794970|gb|EEM42469.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 287

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 85/284 (29%), Gaps = 16/284 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +  + A   ++IE  ++   R  +
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDIEAHVNEFNRLAA 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   N  I    A     +  LD+RD ++ ++S+   I     + N  +        L 
Sbjct: 179 SLAEANHKI--GQAGTQVPNQLLDERDRIVTEMSKYANIEVSYESMNPNIASVRMNGVLT 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                    +        S         V   + + +   K KI
Sbjct: 237 VNGQDTYPLQLNKEKDPMSVEIYGSEISVTSGAIKSAIDTKAKI 280


>gi|188580157|ref|YP_001923602.1| hypothetical protein Mpop_0889 [Methylobacterium populi BJ001]
 gi|179343655|gb|ACB79067.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium populi BJ001]
          Length = 460

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/492 (10%), Positives = 119/492 (24%), Gaps = 44/492 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +    A +     S   ++I  NI N+    Y R DT       +    +Q + + 
Sbjct: 1   MDVFSALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDMLVDGDARSQTAGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----------ADDHYNNSPTHYISKLRD 109
             F ++ ++         +  +     +              A+   N +          
Sbjct: 61  AAFSELTNSVQGNKVSTGVSTNMALDGQGFFVVRKKTTDAGGAESFSNANLFTRRGDFAP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L    +D                  I A     I    +  +   + 
Sbjct: 121 DKDGYLVNGAGAYLVGASLDPVTGQTTGTGPIKISNAIIPAKPTTTITYSANLPKSPATT 180

Query: 170 LTVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
                  +    +   D      +         +              + VYT+ G  + 
Sbjct: 181 NAASTGGLLSAFSDGTDPRVTPANGATTGTVSEANAQSFIDNSIAGPALTVYTASGAPVS 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                        +   +   N    D   V+ NQ S    G+                 
Sbjct: 241 VQSRWAKVAAADTATGTSDTWNLFTADKTSVTGNQTSWTNIGQ----------------- 283

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                      +FS    +   +     +           ++   +S  +          
Sbjct: 284 ---------AFAFSASGQMTAPTGKTVPINNLTVDGVNVGQVTLDLSGGLTQYAAASGTV 334

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +      +       N   +     +   Y +          VA       L   +    
Sbjct: 335 TTNDLKQNGYASGSLNSVEVGDNGLISGKYSNGSVIGLARVEVAQFVNPDGLKPDS---- 390

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             L             + +  + +  +       ++  E S +I  +Q+Y+ + +++   
Sbjct: 391 --LGNYEQTVASGEAINGLKDSTVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTA 448

Query: 469 DKMLQTLLEGVK 480
             M+  LL  ++
Sbjct: 449 QTMISDLLNVIR 460


>gi|157147102|ref|YP_001454421.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895]
 gi|157084307|gb|ABV13985.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895]
          Length = 396

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/479 (10%), Positives = 116/479 (24%), Gaps = 89/479 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
            FN A +  N  ++Q  +I  NI N+    +       +       P  V V        
Sbjct: 2   SFNIATSGLNAITEQLNAISNNIANSGTVGFKSGRAEFSSLYAESQPLGVGVSGVTQSIT 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                                            +         ++           +   
Sbjct: 62  R------------------------------GGNISTTGNALDLAISDSGFFMVRDSTGT 91

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               +      +      N     +Q    +A+ EIE+         S            
Sbjct: 92  TAYTRAGYFGTDSSGNLINNLGMYLQGYPVNANGEIEVGTIGNLTISSGSIPAKATDSLD 151

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +  DA     +      K S     +   +              +F+++ R+    + 
Sbjct: 152 FTANLDARAAEPETAPFNPKDSTSYNNTYTTQ--------------VFDSLGREHTLNQY 197

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              T  +     +                        + D  +P     ++   + ++ S
Sbjct: 198 FVKTGENTWQVHYY-----------------------MDDVEIPDSSQAIEFTEQGVLKS 234

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                 +  +      L I                       QY S+ S  ++  S    
Sbjct: 235 PVGLTNLTTSISGAADLSIDLSYNGT---------------SQYGSDFSVSKNNSSGYAS 279

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                + +     +   + +          +A       L    ++   W++   S +  
Sbjct: 280 GERTGQAIDEDGSVYATFSNGERMLQGQLVLANFANPNGLAS--KDGTTWVQTASSGAPL 337

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                  +   +      +  V+L  EL  L+  +++Y  + K+I   D M+  L + V
Sbjct: 338 TGTPGTGLLGSVKSGALESSNVDLTSELVGLMTAQRNYQANTKVISTNDNMMNALFQAV 396


>gi|307731356|ref|YP_003908580.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1003]
 gi|307585891|gb|ADN59289.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1003]
          Length = 657

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 120/411 (29%), Gaps = 18/411 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N   +  N A     +  +NI NA    Y     +   S             V+ 
Sbjct: 1   MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVYAESGGQYTGSGYLPQGVST 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT   +        L+   S+        S  +    +             I+     ++
Sbjct: 61  VTVTRQYSQYLTTQLNDAQSSSSSLATYNSLISQLNNLIGSPTA--GIASAITSYFTGMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S N S     +T +  A+ +    N + ++   +R   + ++   +S +  +  ++  
Sbjct: 119 NVSNNASSLATRQTAMSGAQTLANQINAAGQQYDALRQSVNTQLNNTVSQINSYTQQIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  LDQRD+ +  +S++IG+  +  +N    V+ S+G  L     
Sbjct: 179 LNGQINAASTQDQPPNQLLDQRDLAVSNLSQLIGVQVV-NSNGAYSVFMSNGQPLVSGGN 237

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   ++   +                       S +  G +  L+  R   +   +
Sbjct: 238 SFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQDLPDSKIEGGTLGGLVAFRSQTLDPAE 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QL  +A       + ++ +      V G  +            Q             + 
Sbjct: 298 AQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVGGPTVYANTQNTGNASLSVSFADAT 357

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                D         + + + +    + +    S   N +     G     
Sbjct: 358 QPTTGDYTLAYNGSSYTLTDNSTGKVVGSASNLSQPINGLNFSTTGTMNAG 408



 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/421 (9%), Positives = 100/421 (23%), Gaps = 2/421 (0%)

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +       +   +                 +  D  ++           +  S + + 
Sbjct: 236 GNSFNLGTAPSTGDSSELSVQYLGQAGANPAAAPQDLPDSKIEGGTLGGLVAFRSQTLDP 295

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +E  LG   +  A   V   N     +  ++  A   +           +    ++ +  
Sbjct: 296 AEAQLGAIAVSFA-SQVNAQNALGITLAGVQGGALFSVGGPTVYANTQNTGNASLSVSFA 354

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T      +             +    +     N +  +   +  TT           E
Sbjct: 355 DATQPTTGDYTLAYNGSSYTLTDNSTGKVVGSASNLSQPINGLNFSTTGTMNAGDSFTVE 414

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
                  +  +       +  +S    A              +V   +            
Sbjct: 415 PTRGALNSFATATTDAAAIAAASPVLGAAASTNTGTGAISSGTVTAGYTMPSSTTTLTYN 474

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGGSV 357
           G+     P+               I      +    S    +     +            
Sbjct: 475 GTGLTGFPVGSTVTVAGSPATTYPITSATTVVPYSSSTGATLTINNTTAGQMNNVSVTIS 534

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 +   +       N   ++   + +    +     VTL     N +  +    + 
Sbjct: 535 GVPAAGDKFTIGPNTGANNDGRNALALSNLSTAKSMNGGTVTLTGAYANYVNDVGNQTNQ 594

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                     +   I+ +  +  GVN+ EE + L++ +Q Y  ++K+I     + QTLL 
Sbjct: 595 IQTSSKAQASLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTLLG 654

Query: 478 G 478
            
Sbjct: 655 I 655


>gi|218886714|ref|YP_002436035.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757668|gb|ACL08567.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 690

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 135/448 (30%), Gaps = 17/448 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVT 51
           SL ++FN   +  +NA    +    N+ NAD   Y R+    T                 
Sbjct: 3   SLNSIFNIGSSALSNAQIGISVTSNNLANADVTGYSRQTVQYTTGPTVSSGGYTYGSGAE 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLRDS 110
           V           +    ++SS       + S  +  E +  D        +  +     S
Sbjct: 63  VAEITRHFSYTVESQYLSYSSDASMWETITSALSSIETLFDDSDDEGYDLSTALDAFWTS 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
           L++ + +   +     +   AE +    N+++  ++ ++   + +IE ++ ++   L+ L
Sbjct: 123 LDALAADPESEAARTELTGYAETLTALINSTSDSLEAVQTGLNTQIEQQVGDINDLLNTL 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
             +N  +    AS  +    LD +   L+ ++  + +S +  ++  + VYT +G TL + 
Sbjct: 183 ADLNSQL----ASDPENATLLDSQATALRDLATYLDLSVVYNSDGQVTVYTGEGQTLVQG 238

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   +    T +  S   F   +         +    + +      +    ++  L
Sbjct: 239 GNTCTLAYEGPQATQSLTSASTFDGQIYFEGGSSHEIALEFVTSGSADGSASAATYKVSL 298

Query: 291 DEMARVLIGSFSEK--DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           D     L            +G  + V    ++       +            +       
Sbjct: 299 DGGETWLTDDSGNALLFTASGADDKVTVAGVSIWFGSATDSGAAAGGTLAVGDDFTVMAK 358

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S +    + S K      ++            S             +   TL   A    
Sbjct: 359 SGVYWYQTTSGKVNVTPVDVTASDSNNRLSGGSLAGLLATRDQYVGSYLETLDAAAEELA 418

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESY 436
             +    S    L   S V   + + + 
Sbjct: 419 WQVNYVHSQGAGLTSFSSVTAENSTGNA 446



 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/411 (11%), Positives = 104/411 (25%), Gaps = 10/411 (2%)

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
            G      S    K  +   + +    +        S       ++   +      ++  
Sbjct: 282 SGSADGSASAATYKVSLDGGETWLTDDSGNALLFTASGADDKVTVAGVSIWFGSATDSGA 341

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     +   +        +     +         V  +      S       L  
Sbjct: 342 AAGGTLAVGDDFTVMAKSGVYWYQTTSGKVNVT---PVDVTASDSNNRLSGGSLAGLLAT 398

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           RD  +    E +           +    S G  L             N+ T  ++S+  +
Sbjct: 399 RDQYVGSYLETLDA-AAEELAWQVNYVHSQGAGLTSFSSVTAENSTGNAATPLADSSLAY 457

Query: 254 IDGVVVSSNQGSAVPKGKI------KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
            D +   +   S                +      +    + ++      + +      +
Sbjct: 458 ADRLGSGTLSISVYDDDTGEVSTLSSIAIDPASDSLQDVADAINTTFSGQLTASINNGQL 517

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
              + +      A     L   L      +         + S L D   V+   +     
Sbjct: 518 TIAAADDMSFQFAGDTSGLLAALGINTFFSGSDAGTITVSDSVLNDSNRVNAGVVDASGE 577

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                    +   +     +   +   + + TL +        +  +   S   H     
Sbjct: 578 ALSGDSTCANDLAALADTKVTLNIGSGSVSKTLSKQLAALASTVGTDVDTSARKHTYYST 637

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + ++  +   +  GVN  EEL  L K +QSY+I+ +LI   + M  T+L  
Sbjct: 638 LADNADDMQQSISGVNSDEELLNLTKYQQSYSIAAQLIQVANSMFDTILSL 688


>gi|219682260|ref|YP_002468644.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621993|gb|ACL30149.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086655|gb|ADP66736.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087241|gb|ADP67321.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 543

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/548 (9%), Positives = 158/548 (28%), Gaps = 81/548 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54
           +  + N A +  N       + +  I   N        +  +   + +N      V V  
Sbjct: 1   MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57

Query: 55  QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +   +     ++    +Q  ++    L++++      +N  +  ++     +E 
Sbjct: 58  IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                 +++  + +      +V       ++++ +  D    +   +  +   + E+  +
Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174

Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              I+     K        ++QRD L+ +++ +IGI  I  ++N   +  ++G ++ +  
Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIDNN 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            +       ++      S         V+      +P   + ALL+ R   +   +N++ 
Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------------------ 333
           ++      S +    I  +     G  I +  +                           
Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQPEVIASSSNRSSSKVSAKWLVISDAKN 353

Query: 334 ------------------ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                                TI       +N +     G        N  N        
Sbjct: 354 TNYVIYFKDKNFIVTRLSDHSTIQPKVHVENNKTLFTFDGIECSIEGENADNDIYMIKPY 413

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLE-----------YARNSIGW-------------- 410
           +   +        +     ++   L             +  N +                
Sbjct: 414 SKTLEELELLINPNEPFAYSSTDDLNNPNRNNAIIINKFYNNVLVDHKETLDQAYQKFSQ 473

Query: 411 -LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    +   +     + +   +     +    ++++E + L   ++ Y  + K++   +
Sbjct: 474 SISHKCNALEEEVPFKRNMIGILENKKMSISN-DMEQEYAELNYEQECYLANVKVLQTAE 532

Query: 470 KMLQTLLE 477
            +L  ++E
Sbjct: 533 NILNEIIE 540


>gi|110641252|ref|YP_668982.1| flagellar hook protein FlgE [Escherichia coli 536]
 gi|191172366|ref|ZP_03033907.1| flagellar hook protein FlgE [Escherichia coli F11]
 gi|300982621|ref|ZP_07176205.1| flagellar hook protein FlgE [Escherichia coli MS 200-1]
 gi|110342844|gb|ABG69081.1| flagellar hook protein FlgE [Escherichia coli 536]
 gi|190907250|gb|EDV66848.1| flagellar hook protein FlgE [Escherichia coli F11]
 gi|300307086|gb|EFJ61606.1| flagellar hook protein FlgE [Escherichia coli MS 200-1]
 gi|324013350|gb|EGB82569.1| flagellar hook protein FlgE [Escherichia coli MS 60-1]
          Length = 401

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 80/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNVAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDSLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPN 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +  +F    V++SN  + +  G I                              
Sbjct: 220 SIAKTATTLVFNANGVLTSNPTANISTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                              +    Q     + +    +  K   
Sbjct: 252 -------------------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|187734244|ref|YP_001880752.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94]
 gi|187431236|gb|ACD10510.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94]
          Length = 402

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIVNSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                            +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------ADPATFSLSFLNSMQQNTGANNIVATPQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|219682254|ref|YP_002468638.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621987|gb|ACL30143.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 408

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 115/478 (24%), Gaps = 83/478 (17%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDT--------MTTISPENVTVVTQRSENK 60
            A +     +     I  NI NA    Y  R              +  N   V   S  +
Sbjct: 5   IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N  + +L      +    +   F  L +         +       +     +    N+  
Sbjct: 65  NFNNGMLVETGRDLDLGIIKDGFFRLVD------SQGHVYYTRDGQFFLDKDQNIINIQG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L       ++    N +                           L  + + N  I   
Sbjct: 119 MYLTGLNTSCSKSDFNNRSN--------------------------LEPINLKNSNILKN 152

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +          R+   +   +          +    +   +     E +    N ++ 
Sbjct: 153 KPTSEIMLKAFLNRNTESKSSVDNSDNKLSKPEDYMTYISIYNKEGKKEDITVSFNKKET 212

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           N +TV  ESN       + +S   +    G++                            
Sbjct: 213 NKWTVNVESNDSDDKETINNSFDLTFNDDGEL---------------------------- 244

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                             + +       K             Q  S+ S+     +   +
Sbjct: 245 --------------TSDNVFNITSKDSKKYENITLNLTGTIEQSNSDVSWEEHSQNGYPQ 290

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++    ++I  YC+   +      ++       L   + N          ++  
Sbjct: 291 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATA-ESGEAKT 349

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                      +S        V+L +EL  +I  +++Y  + +     DK++ TL+  
Sbjct: 350 AMKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLINL 407


>gi|157160603|ref|YP_001457921.1| flagellar hook protein FlgE [Escherichia coli HS]
 gi|170020528|ref|YP_001725482.1| flagellar hook protein FlgE [Escherichia coli ATCC 8739]
 gi|312971213|ref|ZP_07785391.1| flagellar hook protein flgE [Escherichia coli 1827-70]
 gi|157066283|gb|ABV05538.1| flagellar hook protein FlgE [Escherichia coli HS]
 gi|169755456|gb|ACA78155.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC
           8739]
 gi|310336415|gb|EFQ01601.1| flagellar hook protein flgE [Escherichia coli 1827-70]
          Length = 402

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 105/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLKFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|229096239|ref|ZP_04227212.1| Flagellar hook protein flgE [Bacillus cereus Rock3-29]
 gi|228687199|gb|EEL41104.1| Flagellar hook protein flgE [Bacillus cereus Rock3-29]
          Length = 407

 Score =  106 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 108/478 (22%), Gaps = 71/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N      +    NI NA    Y ++  M                +  +
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMF---------------DDLL 45

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           ++  + A S         +S     +M      Y++                        
Sbjct: 46  YNNSIGAKSDGKYAGTNPKSIGNGVKMSGTVTDYSDGTITLTGG---------------- 89

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                           ++    ++  R                       ++        
Sbjct: 90  -KTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG------------------ISSDYYITNT 130

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                  +          +S I G   I        + TS GT        +    +   
Sbjct: 131 EGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGEKQITQD-- 188

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                         + V  N G+              +    +      +          
Sbjct: 189 --------------LPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVQG 234

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               +  ++   P           D      I+  +     + ++ +             
Sbjct: 235 AGGNMTFDAVGNPNPKEQRANIPFDGGS---INLDLSHLTNHPTDKTLSVTDVDGRAAAT 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +A    ++  Y D   K+     VA       L++       +   N +    L 
Sbjct: 292 VKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Q     +         V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 350 ASGQNGAGKVRGGAQEGANVDLSIEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407


>gi|311086083|gb|ADP66165.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 543

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/548 (9%), Positives = 158/548 (28%), Gaps = 81/548 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54
           +  + N A +  N       + +  I   N        +  +   + +N      V V  
Sbjct: 1   MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57

Query: 55  QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +   +     ++    +Q  ++    L++++      +N  +  ++     +E 
Sbjct: 58  IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                 +++  + +      +V       ++++ +  D    +   +  +   + E+  +
Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174

Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              I+     K        ++QRD L+ +++ +IGI  I  ++N   +  ++G ++ E  
Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIENN 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            +       ++      S         V+      +P   + ALL+ R   +   +N++ 
Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------------------ 333
           ++      S +    I  +     G  I +  +                           
Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQPEVIASSSNRSSSKVSAKWLVISDAKN 353

Query: 334 ------------------ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                                TI       +N +     G        N  N        
Sbjct: 354 TNYVIYFKDKNFIVTRLSDHSTIQPKVHVENNKTLFTFDGIECSIEGENADNDIYMIKPY 413

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLE-----------YARNSIGW-------------- 410
           +   +        +     ++   L             +  N +                
Sbjct: 414 SKTLEELELLINPNEPFAYSSTDDLNNPNRNNAIIINKFYNNVLVDHKETLDQAYQKFSQ 473

Query: 411 -LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    +   +     + +   +     +    ++++E + L   ++ Y  + K++   +
Sbjct: 474 SISHKCNALEEEVPFKRNMIGILENKKMSISN-DMEQEYAELNYEQECYLANVKVLQTAE 532

Query: 470 KMLQTLLE 477
            +L  ++E
Sbjct: 533 NILNEIIE 540


>gi|86151187|ref|ZP_01069402.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841534|gb|EAQ58781.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 545

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 134/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +   + S        NI N +   +   D                +  +  
Sbjct: 1   MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                   +V+    S +            K          N+        R     Y  
Sbjct: 61  YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    T    A
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIG-ISTIVRNNNDMVVYTSDGT---------- 225
           IK             + +       +     +   +  +   +  T DG           
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKE 240

Query: 226 -------------TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I + +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYNSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|332162901|ref|YP_004299478.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667131|gb|ADZ43775.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863351|emb|CBX73474.1| flagellar hook protein flgE [Yersinia enterocolitica W22703]
          Length = 397

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/472 (11%), Positives = 116/472 (24%), Gaps = 78/472 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A    +  ++Q  +I  NI N+  K +    T                        
Sbjct: 2   SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMY------------------ 43

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              A S  +G      S    K+                +           +  ++   +
Sbjct: 44  ---AQSQPLGVGVSGTSQSIKKDGSIDRTGNAMDLAISGNGFFV----VKNSSGDEAYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +   ++     N S  ++Q   ADA   ++  I               +    +    
Sbjct: 97  AGMFTTDKNGVLVNASGMKLQGYPADAAGNVQTGI--------------VSDLKISTVGL 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A        +     S     +T     +         +T ++++ R+    +      
Sbjct: 143 PAKATSKLGFMANLPASAQQPTNTTFSVGSKDSYNFMSTSTTYDSLGREHLLTQYFVKQA 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +    +                           D       + L      ++ S + K 
Sbjct: 203 GAGDWKV-----------------------HYAVDGAANSGAHDLKFDTSGVLTSGNSKT 239

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                       GI  T     Q+ +                 N 
Sbjct: 240 ITGG--------------YTPVGADNYGIDITYTGTTQFHAEFLPAPSKSDGYTAGTKNG 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           + +     +   + +          +A       L    +N   W   +RS +  L    
Sbjct: 286 ERIENDGSVYATFSNGKQMLQGKLVLANFANPNGL--ATQNGTTWSVTSRSGAPLLGSPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             +  +I         V+L  EL  L+  +++Y  + K+I   D M+  L +
Sbjct: 344 TGLLGNIVAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 395


>gi|291536012|emb|CBL09124.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1]
          Length = 551

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/553 (7%), Positives = 116/553 (20%), Gaps = 77/553 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46
           ++     A +       +   I  NI N +   +     +                    
Sbjct: 1   MMRSMYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATG 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHY 103
              V               +    S A             +         ++ + +    
Sbjct: 61  TGGVNAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                          +                     +   ++ ++           +  
Sbjct: 121 AGSFYVDGAGNLCM-TSTGYTVMGWQVDPTTGNIKKDTVSALRVMQTSNLTSAPEATTQA 179

Query: 164 RR----------------------------------------------FLSELTVVNDAI 177
                                                            +    ++N   
Sbjct: 180 NVSGIIDKNDKDVLSDNGLVKTLTFFDNLGYSYTARFAMKSTGTDGKYTVELEKILNSDG 239

Query: 178 KFKTASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                 +    D  D       +  L   S++          +   V +    T  E   
Sbjct: 240 TTFYDPETSKVDLSDIFGAKTTNATLGTYSQVQSGYYYDSAKDKFYVGSDATGTELEWDA 299

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               F++ N+ T T     ++     + S  G    K  I          V  +      
Sbjct: 300 TTSTFKEKNAPTNTHSLKQVYGISDAMVSKIGGGQAKAAIAKGTLTISGDVTDYAIDFST 359

Query: 293 MARVLI-----GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                       S ++ + +  N   +           +D    +  +          + 
Sbjct: 360 KDGTFTGVGARTSNNKTNSVTLNMSKLGNNPTQFDDITIDFSGLKDANNGGKSTAVMSTG 419

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                  G   K       ++     +   Y +   +      VA       L +   N 
Sbjct: 420 SIDDGVTGKGKKLGAMIGISIDNNGLITGIYDNGNKETLGQIAVAQFANASGLEKVGENC 479

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                 N  +   +  +     + ++        V+L  E + +I  ++ +  ++++I  
Sbjct: 480 YRTT-LNSGEFDGIGDEISADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITT 538

Query: 468 TDKMLQTLLEGVK 480
           +D +L+ L+   +
Sbjct: 539 SDTLLEELVNLKR 551


>gi|303248690|ref|ZP_07334944.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ]
 gi|302489946|gb|EFL49872.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ]
          Length = 549

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/548 (8%), Positives = 118/548 (21%), Gaps = 71/548 (12%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQR 56
            L        +     S +  SI  N+ N +   +    T               V    
Sbjct: 4   GLNTAMWSGVSGLMANSTKMTSIGNNLANVNTYGFKSARTDFVTLMSATIGTASGVDQVG 63

Query: 57  S------ENKNMFDKVLHAHSSAIGQQRLLQSFEAL-------KEMMSADDHYNNSPTHY 103
                     +     L    +          F  +             +          
Sbjct: 64  RGVRVGSVVTDYSQGGLEITGTNTDMAINGNGFFMVKQKSSVGSNGKMLNTGNQTMYYTR 123

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDN-------AEEVVQNFNTSAREVQKIRADADKEI 156
                     Y  + +   +    +D        A     +      +++ I  D+    
Sbjct: 124 AGDFHFDENGYLSSTTGLAVQGWKVDQDKIDTATASGTTLSSTPITGQIRDIVLDSYSSP 183

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ--------KISEIIGIS 208
               ++     +  +    A     AS    +      D                 + + 
Sbjct: 184 AKATTSTTVITNLDSDSVSATTRNLASGGSFYAMSASWDGTKDPAMASTAYDYQTTVKVY 243

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----NQG 264
               + + + VY             + +     +     +     + G  ++        
Sbjct: 244 DANGSPHTLTVYYDKIKNDNGKEYWEYSVTCDPAEDGRVDLLSNALAGTQMAGLLMVGTM 303

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE--------------------- 303
           +    G ++ +               +     +    S                      
Sbjct: 304 TFDSSGSMENMSAYTLKASNATAGAFNSNLWSVANISSSGYPEFTANFKSVSNGSFTDQG 363

Query: 304 -----------KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                      +      +    G      +  L +     +     V   Y ++ S + 
Sbjct: 364 NATSISLNLGMRCTTGWATGTTLGDIDPTDMTTLGSFNPAQLKINSNVTTNYATSSSTVF 423

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              +     L    ++     L   + +  +       +A       L     +      
Sbjct: 424 TSQNGYTAGLLTSVSVDSDGVLTGTFSNGVSLQLWVLALANFTNLQGLNNAGNSLYT--A 481

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S     +  +      IS +   +  V++  E+  +I  ++ +  ++K I   D ML
Sbjct: 482 TLESGEGTTNRPNSGSVGSISGNTLESSNVDMAAEMVSMIVTQRGFEGNSKTITTVDTML 541

Query: 473 QTLLEGVK 480
             +++  +
Sbjct: 542 SEIIQLKR 549


>gi|315123658|ref|YP_004065662.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017380|gb|ADT65473.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 544

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/543 (10%), Positives = 131/543 (24%), Gaps = 67/543 (12%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK---- 60
             F    +   + S        NI N +   +   D                +  +    
Sbjct: 2   NSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYG 61

Query: 61  --NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 +V+    S +            K          N+        R     Y  + 
Sbjct: 62  SGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDS 121

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             + +  T+      +  +   +      +           +++   F    T    AIK
Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIK 181

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL---------- 227
                        + +       +    +    +  +   +  T DG  +          
Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDV 241

Query: 228 -------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS------------- 261
                         +      +FE      +  +SN + + G+  +S             
Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQ 301

Query: 262 -------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
                          G    L    + V+P   + +   A   I   +          N+
Sbjct: 302 KANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAIGNPTEGNM 361

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357
                   +++    +      TI ++     + +                  +      
Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQDG 421

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  +   N++    ++  + +  N       +        L     N       +   
Sbjct: 422 VAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGDA 481

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  + 
Sbjct: 482 SFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541

Query: 478 GVK 480
             +
Sbjct: 542 MKR 544


>gi|331652129|ref|ZP_08353148.1| flagellar hook protein FlgE [Escherichia coli M718]
 gi|331050407|gb|EGI22465.1| flagellar hook protein FlgE [Escherichia coli M718]
          Length = 402

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +S    A                                    
Sbjct: 202 KTGDNNWQVYTQDSSDPNSIAKIATT---------------------------------- 227

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +    G   +                        +    Q     + +    +  K   
Sbjct: 228 LEFNANGTLVDGAMANNIATGAINGADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|284925346|gb|ADC27698.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 544

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/543 (10%), Positives = 132/543 (24%), Gaps = 67/543 (12%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK---- 60
             F    +   + S        NI N +   +   D                +  +    
Sbjct: 2   NSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYG 61

Query: 61  --NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 +V+    S +            K          N+        R     Y  + 
Sbjct: 62  SGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDS 121

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             + +  T+      +  +   +      +           +++   F    T    AIK
Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIK 181

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL---------- 227
                        + +       +    +    +  +   +  T DG  +          
Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDV 241

Query: 228 -------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS------------- 261
                         +      +FE      +  +SN + + G+  +S             
Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQ 301

Query: 262 -------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
                          G    L    + V+P   + +   A   I   +          N+
Sbjct: 302 KANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEGNM 361

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357
                   +++    +      TI ++     + +                  +      
Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQDG 421

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  +   N++    ++  + +  N       +        L+    N       +   
Sbjct: 422 VAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDA 481

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  + 
Sbjct: 482 SFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541

Query: 478 GVK 480
             +
Sbjct: 542 MKR 544


>gi|296274397|ref|YP_003657028.1| hypothetical protein Arnit_2873 [Arcobacter nitrofigilis DSM 7299]
 gi|296098571|gb|ADG94521.1| protein of unknown function DUF1078 domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 913

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 12/222 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54
           +L   N AQ+    A     + + NI N + + Y +R   T+ +           VTV  
Sbjct: 1   MLDSLNIAQSGLKAAQTAVENTMNNIANVNTEGYKKRVVETSETDQLPGSKLGRGVTVGN 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                       +   ++    Q  L +     E +   +      +  + K   ++ES 
Sbjct: 61  TIRITSEYLYDNIIKQNTKESYQSELSTMLGNIEDVF-KETDTAGFSTDLDKYFQTMESI 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N + ++    +    ++VV + N     ++   A   + +  +++ +   L ++  +N
Sbjct: 120 RANPNNEVYKNQLKITGQKVVDDLNNLYDGIENQEAVFQQSLTEDVNQINSKLEQIQNIN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             IK      H +++ LD+RD+L ++IS    I+     +  
Sbjct: 180 LEIKK---QGHASNELLDKRDLLEKQISTYANITVSRDPDFY 218



 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/437 (12%), Positives = 125/437 (28%), Gaps = 27/437 (6%)

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK-------LRDSLESYSKNLSEDI 122
            ++A       +   +L E   ++     S  + ++           S E+ + N     
Sbjct: 478 EAAAALFGVNQEYTLSLTETSGSNTSNITSVLNVVNDGKDITQSFEVSTENTNSNPLVSA 537

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS------ELTVVNDA 176
           +                  +  ++ + A     I   +       +        +    +
Sbjct: 538 IPTVNPATGATQASGTTQVSS-IKSLSAVDGSSITHTVELKNTTTTAQVMKVSFSDDTGS 596

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T          D +   +     I   S     NN   V T    +   T     +
Sbjct: 597 YFDLTPKFIPDSITYDAQTGEITIPPGIKSFSFTTDTNNLAPVNTDQTYSFSITDNAAPS 656

Query: 237 ----FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                   +S  + ++   +             A     I +L Q         +  ++ 
Sbjct: 657 GLTPVTMTSSIVINNKEGVVSNSIYKNEKRSDLANSAVSITSLDQPITLTSGKLKAIVEN 716

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           +      +  ++   A ++     + +       D+            + +   +     
Sbjct: 717 LTTDSGKNKFQEYKDALDAFAKTFVDMTSSYIKNDDGTYVNGEIATDSDIRVADDIDLFS 776

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF---------DPVAGINTNVTLLEY 403
                + KF  +V       D      + +++N  F         D V+      +   Y
Sbjct: 777 GSSVRTMKFNSDVVGSLKQKDYDYLASNQWSENISFLGYGQDKSNDKVSSDTETTSFSGY 836

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +N    + +++  S       + V   ++ SY     V+  EE+  LIK + +Y+ + K
Sbjct: 837 MQNLRINISRDKESSDSTVETQKAVSESMNNSYDLVTKVDNDEEMINLIKFQSAYSANAK 896

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I   D+ML+TLL   +
Sbjct: 897 MITTVDEMLKTLLGIKR 913


>gi|315637837|ref|ZP_07893027.1| flagellar hook protein [Campylobacter upsaliensis JV21]
 gi|315482078|gb|EFU72692.1| flagellar hook protein [Campylobacter upsaliensis JV21]
          Length = 545

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/545 (9%), Positives = 133/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +     S        NI N +   +   +        +       +  +  
Sbjct: 1   MMGAFYNGISGVKTNSFGIDISANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +   K++    S +  +         K                    +     +  
Sbjct: 61  YGSTSASSKLVFEQGSPVASEGEFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN-------------- 162
           +   + +  T+    + +  +   +      +           +++              
Sbjct: 121 DSYGNFVLGTMNPAFQGITYSDRVAGLMGDYLNTGTPVNNGFTVNSNDKFTLGTTGSQGA 180

Query: 163 ----LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--------------SEI 204
               +  +L      N   K    +           +    K+              S+ 
Sbjct: 181 LQVPINMYLPPKVTQNVQWKGNLNTSTKTEVVTIDLNSGNFKLEKTADGKFKVSGSVSKN 240

Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
              S    +   +     +G   +   T+ +D+NF          +++ + +D   +S+ 
Sbjct: 241 EVFSAKENDRILLNFIDKNGVKQSFEATLDKDLNFVSKELDLKGLDADSVKLDSAQISTE 300

Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQL-------DEMARVLIGSFSEKD 305
                            G    L    + ++P   + +          A+        + 
Sbjct: 301 QQKANKDILEAPIYNADGSKSTLRLTLERILPQVGDTMVYKATAQIYNAKGEAVGEPTEG 360

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG---------- 355
            +  N            + + +         T        S  S +              
Sbjct: 361 SMTFNQHGALLSNDIKSVNNPEGGAINIDLGTPYDPNIAGSGYSGIYIQAGKEKSVITRH 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  ++   +    +LI  + +          +        L+    N       + 
Sbjct: 421 DGIAEGFFDQYRIGDGGELIAQFSNGQTAIVGKIALYNFINEQGLMAMGDNIFAATGNSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 EASFIMKDGEIVNTAKFKGGFLEQSNVDLSMELSNLIVTQRAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   K
Sbjct: 541 INMKK 545


>gi|315057484|gb|ADT71813.1| Flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni S3]
 gi|315926889|gb|EFV06255.1| flagella basal body rod family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315926904|gb|EFV06270.1| flagella basal body rod family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 544

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/543 (10%), Positives = 132/543 (24%), Gaps = 67/543 (12%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK---- 60
             F    +   + S        NI N +   +   D                +  +    
Sbjct: 2   NSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYG 61

Query: 61  --NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 +V+    S +            K          N+        R     Y  + 
Sbjct: 62  SGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDS 121

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
             + +  T+      +  +   +      +           +++   F    T    AIK
Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNNSFSIGTTASQGAIK 181

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL---------- 227
                        + +       +    +    +  +   +  T DG  +          
Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPSKFNITKTEDGKYVVSGSVSKEDV 241

Query: 228 -------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS------------- 261
                         +      +FE      +  +SN + + G+  +S             
Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTEQQ 301

Query: 262 -------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
                          G    L    + V+P   + +   A   I   +          N+
Sbjct: 302 KANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEGNM 361

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357
                   +++    +      TI ++     + +                  +      
Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKQGVEKNVVTQQDG 421

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  +   N++    ++  + +  N       +        L+    N       +   
Sbjct: 422 VAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDA 481

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  + 
Sbjct: 482 SFIMKDGQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541

Query: 478 GVK 480
             +
Sbjct: 542 MKR 544


>gi|239817165|ref|YP_002946075.1| flagellar basal body FlaE domain protein [Variovorax paradoxus
           S110]
 gi|239803742|gb|ACS20809.1| flagellar basal body FlaE domain protein [Variovorax paradoxus
           S110]
          Length = 404

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 101/474 (21%), Gaps = 73/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++  +  + A+     I  NI N+    +               V             
Sbjct: 2   GFSQGISGLSAAAANLDVIGNNIANSGTVGFKSGAATFQDVYAGSRVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L  +   + +  +      +S    ++ L         + S +++  
Sbjct: 50  -------------LGVAVSGIVQNFTQGSVQTSSRPLDVAILNGDGFFRLSSPSGEVMYS 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  +       +A                              +       +A+  
Sbjct: 97  RNGQFTRDKDGFIVNAAG-----------------------------LRLTGYGVSATGG 127

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                     V    +S     +     N D        T    T     N+        
Sbjct: 128 LDGGTPGPLQVQTTAMSPKATTAINATFNLDARGTVPTKTPFSATDSATFNYSNALGPVF 187

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            S  NP  +    V +   +    G                      +      S    D
Sbjct: 188 DSLGNPHELGVFFVKTGANAWDVYGAADG----------------SALNGGAPISTMSFD 231

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                     G      +   +  +    +  +    Q+ +                   
Sbjct: 232 GNGNLLTPAGGKLTLPTMNFGNGSVALNATVDLSGTTQFGNVNEIKTLKQDGYTSGTLTS 291

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   + +          +        L     N   W E   S         
Sbjct: 292 FSINPDGTITGKFSNEQTTLMGQVVLTSFANPNGLEPMGENV--WGETLASGQPLTGTPG 349

Query: 426 QVV-FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  ++        V+L  EL  LI  ++SY  + + +   D+++QTL+  
Sbjct: 350 AGTKQGSLASGALEASNVDLTSELVNLIVAQRSYQANAQTVKTQDQVVQTLINI 403


>gi|209695762|ref|YP_002263692.1| flagellar hook protein FlgE [Aliivibrio salmonicida LFI1238]
 gi|208009715|emb|CAQ80019.1| flagellar hook protein FlgE [Aliivibrio salmonicida LFI1238]
          Length = 432

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/481 (8%), Positives = 113/481 (23%), Gaps = 62/481 (12%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQRS 57
             A +  + A +   +   N+ NA+   +            +                  
Sbjct: 3   YVALSGLSAAQKDLNTTSNNLANANTFGFKESRAEFGDVYSSSLFSNTKTTTGGGAQTTK 62

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +   +      ++ +  +   Q F  + +          +            E+Y   
Sbjct: 63  IAQQFHEGSSIYTNNPMDLRISGQGFFGVAKDRLQP---GTNELSRNGAFHLDKENYVTT 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +++ L    +D     V ++   A ++                            N  I
Sbjct: 120 SNDEFLLGYDVDPESGNVSSYQPKALKIPDQFG-----------------KPRATENVDI 162

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +     D            ++   ++T         + T                
Sbjct: 163 GMNLPASEVPKDPALFDMNDPDTFNKSTSVTTYDLLGQPYKMTTYY-------------- 208

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
             +   T  +  N  +           +        A  Q+  S+V         +    
Sbjct: 209 --VKDATQPNRWNVFYSSTDTEGEKAVNINAGDATNAAGQVGHSIVFNNDGTTQSVNAGQ 266

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + +       N              D   +                      R     
Sbjct: 267 PVTTTPLGANGLNMNGADTQQTLTMKFDNPTQFSAPFEMR--------------RFSEDG 312

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +     +  ++    +++  Y +  +       +  +     L +       W     S 
Sbjct: 313 ATTGYLSKVDIDKSGNIVGSYSNGKDVTLGRVAMVRVTNQQGLAQ--NGGTQWSTTQASG 370

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +Q  F  I         +++ +EL  LI  ++++  +++ +   +++ Q +L+
Sbjct: 371 AAIWGEANQGSFGDIQSGTLEQSNIDMTQELVDLISAQRNFQANSRALDVHNQLQQNILQ 430

Query: 478 G 478
            
Sbjct: 431 I 431


>gi|224417868|ref|ZP_03655874.1| flagellar hook-associated protein FlgK [Helicobacter canadensis MIT
           98-5491]
 gi|253827207|ref|ZP_04870092.1| flagellar hook-associated protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141411|ref|ZP_07803604.1| flagellar hook-protein FlgK [Helicobacter canadensis MIT 98-5491]
 gi|253510613|gb|EES89272.1| flagellar hook-associated protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130442|gb|EFR48059.1| flagellar hook-protein FlgK [Helicobacter canadensis MIT 98-5491]
          Length = 609

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/450 (9%), Positives = 115/450 (25%), Gaps = 21/450 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENV 50
            LL+  N              ++  NI NA+N+ Y R+   ++              + +
Sbjct: 3   GLLSSLNTPYTGLTGHQVMVDTVSNNIANANNEFYSRQVVRSSAQTPLQTSSNYVIGQGL 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +++    +           S                      +       + +    ++
Sbjct: 63  NIISVERVHDEYTFSRYKKASMEKTYYEKSFEGLKEASSYY-PEVDGVGIYNDLQNYFNA 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  S    +      + + A  +  N +++   +  ++   + E+++ +  + R   ++
Sbjct: 122 WKDLSTKSGDSAQKIALAEQASTLANNISSTRDRLVNLQQSLNNELKVAVDEVNRLGEQI 181

Query: 171 TVVNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             +N  I           A+D  D RD    +I+ +IG     +          +     
Sbjct: 182 AQLNKKIAEYEYQELNQKANDLRDLRDQYEFEINNLIGCDVFKQGVKGSACVDENIADFD 241

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +     I  + +   T                          K   L    +        
Sbjct: 242 DGYTLTIGGKAIVDGTSFHPLTLDNSQNPSGIYTIKYLRSDHKEYNLTNAINEGKVGAIL 301

Query: 289 QLDEMARVL-----IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
            L     VL     +G             N       +          +  +  I     
Sbjct: 302 DLIRTEDVLDCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLSAKSDTLNINSQDA 361

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++   +  G      +    + +      I++     +     +     N N+   + 
Sbjct: 362 LVTSDYNINSGSFKVVMYNKQGQEIGSRSVNIDNLTSMQDVLDQLNANIDDNGNMNASDD 421

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
             +   ++    +DS    + S+     I 
Sbjct: 422 FDD--RFVATFNNDSKTFTITSKNPSEEIY 449



 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 135/492 (27%), Gaps = 34/492 (6%)

Query: 11  QNICNNASQQF----ASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSENKNMF 63
           ++  +          +++  NI     ++   R      S  N   V V       + + 
Sbjct: 128 KSGDSAQKIALAEQASTLANNIS--STRD---RLVNLQQSLNNELKVAVDEVNRLGEQIA 182

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              L+   +    Q L Q    L+++    +   N+        +  ++  +        
Sbjct: 183 --QLNKKIAEYEYQELNQKANDLRDLRDQYEFEINNLIG-CDVFKQGVKGSACVDENIAD 239

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                          + ++     +    +      I  LR    E  + N   + K  +
Sbjct: 240 FDDGYTLTIGGKAIVDGTSFHPLTLDNSQNPSGIYTIKYLRSDHKEYNLTNAINEGKVGA 299

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
             D     D  D         + I+ +    N ++  T++       +    +   +NS 
Sbjct: 300 ILDLIRTEDVLDCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLSAKSDTLNINSQ 359

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                S+     G   S        +G+      +    +   Q+ LD++   +  + + 
Sbjct: 360 DALVTSDYNINSG---SFKVVMYNKQGQEIGSRSVNIDNLTSMQDVLDQLNANIDDNGNM 416

Query: 304 KDPIAGNSENVPGLFIADGIKDLD--NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 +   V           +   N   +           +       R     S   
Sbjct: 417 NASDDFDDRFVATFNNDSKTFTITSKNPSEEIYISIQDDGTNFAGALGINRFFAGNSADN 476

Query: 362 LWNVKNLAGYPDLINHY--------------CDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           +   +       LI  Y                       F    G     T+  Y R  
Sbjct: 477 IELAEPYKSDATLIRAYREPVDGNFEVANLMQQLQYDKITFTSQDGTQQEETISGYFRYI 536

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
            G +      +       + V+  I + Y     V++ +EL  LIK +  Y+ + K++  
Sbjct: 537 AGKVSSQTESTQITLETKEAVYISIKQEYKAISEVSVDDELINLIKYQSGYSANAKMVST 596

Query: 468 TDKMLQTLLEGV 479
            D+ML TLL   
Sbjct: 597 IDEMLNTLLGIK 608


>gi|148269402|ref|YP_001243862.1| hypothetical protein Tpet_0257 [Thermotoga petrophila RKU-1]
 gi|147734946|gb|ABQ46286.1| protein of unknown function DUF1078 domain protein [Thermotoga
           petrophila RKU-1]
          Length = 623

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/388 (9%), Positives = 94/388 (24%), Gaps = 21/388 (5%)

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                      +  + +      +    G       +            V       +  
Sbjct: 254 EEAGVYAESQVITATTDGSISGSTALPDGTYQAIVLDSSGNVVYNGTTTVSGGSFTINDS 313

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI---VR 212
                +N    L      ++++     ++       + R       +  +          
Sbjct: 314 DITAGNNYTVILLTPNNASNSLTIAPGAELVIPTSGEPRFYESDNPTNFVQTDYTSPRYT 373

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
               +     +  T++    R  N    +     +     + D     S        G +
Sbjct: 374 TAVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWRAYTDSGEPISLIDEDGGSGYV 433

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
             L+   +S  PI    LD    +  G        AG                       
Sbjct: 434 AGLIDFDESGRPIQYRGLDSSYNLSSGEVRTIQFDAG----------------QSGDGVV 477

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            I+       Q+  + +        +   +     +    ++I  + +          +A
Sbjct: 478 TITADFSGATQFSGDSTLNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQIALA 537

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
             N    L E   +   ++    S    +          +         V+L EE + +I
Sbjct: 538 VFNNPSGLSEVGNSL--YVVSANSGVPKIGAPGSGGRGILIPGALEMSNVDLAEEFTKMI 595

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  + ++I   D++L  L+   +
Sbjct: 596 VAQRGFQANARVITTADQILNELVNIKR 623



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/439 (9%), Positives = 99/439 (22%), Gaps = 19/439 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           N       +  NI N +   +                 T ++     
Sbjct: 1   MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETML----AQTIKAGRSP- 55

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L     ++ ++M+     N      ++   D     S   S   
Sbjct: 56  ---QENVGGTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                            ++  +VQ   A  D E      +  + + +L +          
Sbjct: 113 TRAGAFTLDSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNKPIGDLVISAGMTMPAKK 172

Query: 183 SKHDAHDFLDQR----DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
           + +   +            +  +++  GI+  VR   +             +    +  +
Sbjct: 173 TSNVRFEGNLNSKLGPGSFVITLTDENGINHDVRVWFEKTQSDLGTDPFSSSQRYTMKID 232

Query: 239 KMNSYTVTSESNPIFID-------GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             N  T   +   +F +       GV   S   +A   G I     + D           
Sbjct: 233 IDNDGTADVDGYMVFNEFGRVEEAGVYAESQVITATTDGSISGSTALPDGTYQAIVLDSS 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   +         N  ++        I    N     ++          ++    
Sbjct: 293 GNVVYNGTTTVSGGSFTINDSDITAGNNYTVILLTPNNASNSLTIAPGAELVIPTSGEPR 352

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                    F+        Y   +  Y    N   ++     +       E  +N+  W 
Sbjct: 353 FYESDNPTNFVQTDYTSPRYTTAVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWR 412

Query: 412 EKNRSDSHDLHMKSQVVFN 430
               S      +       
Sbjct: 413 AYTDSGEPISLIDEDGGSG 431


>gi|218778868|ref|YP_002430186.1| hypothetical protein Dalk_1015 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760252|gb|ACL02718.1| Flagellar hook protein FlgE [Desulfatibacillum alkenivorans AK-01]
          Length = 693

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 92/379 (24%), Gaps = 7/379 (1%)

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              +         +   S  + G       +         +  V      AD     +I 
Sbjct: 322 TNATATWSITNGLANYPSASVSGNANSFEVDLDGNGTTDISGTVAGGGMTADATGSFDIY 381

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                L++             +             +   +     ++      ++   Y 
Sbjct: 382 PPNGMLAQTWDGTATPPLGDGAYEYQAIL-----KVYDSLGNTHDLTVYYDKGDNEGEYE 436

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
              T   +   R      +     T ++    +   V++      V   ++         
Sbjct: 437 FIVTVAPDEDERGGGTTGLPDIDTTIDNGAGLLARGVLTFTSDGEVSNVEMWEFNSDGTD 496

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                 +    +        S       N      L     +            +     
Sbjct: 497 WSIDNADNWTALNPDNSSHISSDGYFYINPSFAEDLTSPMELNLGMAYDGTAWVQESLST 556

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            QY S  +      +       +  +++    +   Y +   K      +A  N    L 
Sbjct: 557 TQYASAGNTTYQATTGYGVGDLDGISVSSDGVITGSYSNGQIKPLFRIALAKFNNVQGLQ 616

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +  +N         S     +         I+ +      V+L  E   +I  ++ Y  +
Sbjct: 617 KMGQNMFA--ATRNSGDAITNKPGTNGLGTITSNSLEQSNVDLANEFVKMITTQRGYQAN 674

Query: 462 NKLIMFTDKMLQTLLEGVK 480
           +K+I  TD++LQ ++   +
Sbjct: 675 SKVITVTDQLLQEVINLKR 693



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/389 (8%), Positives = 76/389 (19%), Gaps = 22/389 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL +      +  N        I  NI N     +                    + + 
Sbjct: 1   MSLSSALFSGISGMNTLGNSMTVIGDNIANVSTVGFKSSRVTFQDVLAQTVSTQSGTGQL 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                            L +  SA       + F  +++     ++ N        + R 
Sbjct: 61  GRGAAMGDITGIFSQGSLESTDSATDLAIGGEGFFVVRD----PENVNLEYFTRAGEFRF 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N S  ++    +                +  I  ++          +    + 
Sbjct: 117 DEDGNFVNPSGYLVRGWTL-------DQKGNEEGSIGDIILNSFTSPPEATDKVTLITNL 169

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +   D                   D +   I   +   T V  +        +      
Sbjct: 170 DSDGEDNSLDADVKTASLGTVSLSGDAVNHPIYLTLNNQTAVNTDVSQFAVAWNSGAGAW 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           ++            +  +    I +D    +   G                         
Sbjct: 230 SITHGATEYPAAVISGDAAGFTIDLDNDGTADITGRTGGSLTADGAGSFDIEAPGALGVV 289

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                 V                   G  ++         +  G++     +    +N  
Sbjct: 290 TQGGDAVNNNIMVTVSDSEAILAMASGFEVSWTNATATWSITNGLANYPSASVSGNANSF 349

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            +   G+ +      V       D    +
Sbjct: 350 EVDLDGNGTTDISGTVAGGGMTADATGSF 378


>gi|146311246|ref|YP_001176320.1| flagellar hook protein FlgE [Enterobacter sp. 638]
 gi|145318122|gb|ABP60269.1| flagellar basal body FlaE domain protein [Enterobacter sp. 638]
          Length = 404

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 110/476 (23%), Gaps = 77/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               +          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKIGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  + +         +       + +        N+    
Sbjct: 62  NDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNIVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +      +Q               A K        +             +    A
Sbjct: 116 LTGYPVAGTPPTIQTGANPQAITIPNTLMAAKSTTTASQQIN------------LNSTDA 163

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A +  D  D         + +     N ++M ++    T          +     S
Sbjct: 164 APSKAFNVADTSDPDSYNKKGTVTVYDSQGNAHNMNLFYVKDTAANSWKVYSQDASVPGS 223

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +      GV+ +               + +    +P        ++       +
Sbjct: 224 AATLATTLTFSASGVLTA------------GGQVNVTTGTIPGATPATFALSFANSMQQN 271

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                         + +    +  K   
Sbjct: 272 T------------------------------------------GANNIVATNQNGYKPGD 289

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +  N+      +A    N  L     N   W     S    L 
Sbjct: 290 LVSYQINDNGTVVGNYSNEQNQVLGQIVLANFANNEGLKSEGDNV--WTATQSSGVALLG 347

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 348 TAGTGNFGSLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 403


>gi|187925754|ref|YP_001897396.1| flagellar hook-associated protein FlgK [Burkholderia phytofirmans
           PsJN]
 gi|187716948|gb|ACD18172.1| flagellar hook-associated protein FlgK [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 121/411 (29%), Gaps = 18/411 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N   +  N A     +  +NI NA    Y     +   S             V+ 
Sbjct: 1   MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVYAESGGQYTGSGYLPQGVST 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T   +        L+   S+        +  +    +             I+     L+
Sbjct: 61  TTVTRQYSQYLTTELNNAQSSGSSLSTYNTLISQLNNLIGSPTA--GIASAITSYFTGLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S N S     +T +  A+ +V   N + ++   +R   + ++   +S +  +  ++  
Sbjct: 119 NVSNNASSLATRQTAMSGAQTLVNQINAAGQQYDALRQSVNTQLTNTVSQINSYTQQIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  +DQRD+ +  +S++IG++ +  +N    V+ S+G  L  +  
Sbjct: 179 LNGQITQASTQGQPPNQLMDQRDLAVSNLSQLIGVNVV-NSNGSYSVFMSNGQPLVSSGN 237

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   ++   +                   +   S +  G +  LL  R   +   +
Sbjct: 238 SYNLGTAPSTGDTSELSVQYLGQAGANPAAAPQNLPDSKIDGGTLGGLLAFRSQTLDPGE 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QL  +A       + ++ +        G  +            Q               
Sbjct: 298 AQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFANPA 357

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                D         + + + +    + +    S   N +     G     
Sbjct: 358 QPTTGDYTLAYNGTTYTLTDNSTGSVVGSATNLSQPINGLNFSTTGTMNAG 408



 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 91/361 (25%), Gaps = 3/361 (0%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            +     +  +    V   N     +   +  A   +           +    +N +   
Sbjct: 296 GEAQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFAN 355

Query: 180 --KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
             +  +      +      L    +  +  S    +     +  S   T+       +  
Sbjct: 356 PAQPTTGDYTLAYNGTTYTLTDNSTGSVVGSATNLSQPINGLNFSTTGTMNAGDSFTVEP 415

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
            +    +  + +               +A        + Q   +      N    ++   
Sbjct: 416 TRGALNSFATATTDASAIAAAAPVLGAAASSNTGTGTITQGTVTAGYTMPNSTTTLSYDG 475

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            G               P                     T+ +N       + +    S 
Sbjct: 476 TGLSGFPVGSTVTVAGSPATTYTIASAATVVPYSSATGATLTINNATAGQMNNVSVTISG 535

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +     +   +       N   ++   + +    A     VTL     N +  +    + 
Sbjct: 536 APA-AGDKFTIGPNTGATNDGRNALALSNLSTAKALAGGTVTLTGAYANYVNNIGNQTNQ 594

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                     +   I+ +  +  GVN+ EE + L++ +Q Y  ++K+I     + QT+L 
Sbjct: 595 IQTSSTAQSSLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTILG 654

Query: 478 G 478
            
Sbjct: 655 I 655


>gi|329901230|ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480]
 gi|327549162|gb|EGF33754.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480]
          Length = 407

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/473 (9%), Positives = 106/473 (22%), Gaps = 68/473 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+       N+ N+    +                             
Sbjct: 2   GFQQGLSGLNAASKSLEVTGNNVANSSTVGFKSAQAQFADV------------------- 42

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                              +L    ++      S      +      + S N  +  +  
Sbjct: 43  ----------------YASSLTGGGASQVGIGTSVATVAQQFTQGNVTASNNPLDLAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                         +   + Q         ++     +    + LT    +     A+  
Sbjct: 87  GGFFRLSTGGAITYSRNGQFQ---------LDKNGGIVNSNGAHLTGFGVSATGVLATGT 137

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            ++  ++  D+  +  SE + +   + +       T+   T   +  R  +    +S   
Sbjct: 138 PSNLVINTADLAPKTTSE-VKLLVNLDSRETTPKTTTFSATDPTSYNRSTSVSVFDSLGN 196

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           +      F+     +S                                +       S   
Sbjct: 197 SHVLQSYFVRTSPTASTWDVYGTADG---------------------ASLTPALIGSLSF 235

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                        +   +    Q+ S                 + 
Sbjct: 236 NTDGGLTTAQPFSATLPTTVTPGASALTLKFDLTGTTQFGSTFGLNTQSQDGYTSGKLSG 295

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                   +   Y +  +       ++       L     N   W E   S    +   +
Sbjct: 296 FATGADGVITGRYTNGKSATLGQVVLSNFTNPNGLQNLGNNV--WSETAASGGPLVGTPN 353

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  S      V+L  EL  +I  ++ Y  + + I   D++LQTL+  
Sbjct: 354 SGNLGVLQSSAVEDSNVDLTAELVNMITAQRFYQANAQTIKTQDQVLQTLVNL 406


>gi|188534170|ref|YP_001907967.1| flagellar hook protein FlgE [Erwinia tasmaniensis Et1/99]
 gi|188029212|emb|CAO97084.1| Flagellar biosynthesis, hook protein [Erwinia tasmaniensis Et1/99]
          Length = 402

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/476 (10%), Positives = 100/476 (21%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +     E    N+    
Sbjct: 62  GDGTTTTTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDAERNIVNMQGLK 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           VQ                                     N        
Sbjct: 116 LTGYPATGTPPTVQ----------------------------------AGANPVALSVPT 141

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A              ++     T +  N+          T F+++           
Sbjct: 142 TAMSARATTTAAMTANLNSTDSSKDLTKLNINDSTTYNAKSAMTTFDSLGNAHTVNLYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +      +D    ++   + +       L    +  V      L            
Sbjct: 202 KTADNNWTVHPVDSSTGTAGTNTNLVFDANGQLTTPANGQVSYSMGAL------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                 +                 Q     +F        K   
Sbjct: 250 ----------------------NGSTAQPGMTISLAGSLQQNNGKSTFGNPTQDGYKPGE 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     L+  Y +   +      ++       L     N   W   + S      
Sbjct: 288 LTSYQINDDGTLVGSYSNEQTQVLGQIVLSNFANPEGLKSEGDNV--WSATSSSGQALTG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    ++     +  V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|330501137|ref|YP_004378006.1| flagellar basal body FlaE domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915423|gb|AEB56254.1| flagellar basal body FlaE domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 395

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 119/474 (25%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A    +  ++Q  +I  NI NA    +    T       +   +      + +   
Sbjct: 2   SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEFGSIYADSQAMGV----EVLATT 57

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              +   ++                      N                      +    +
Sbjct: 58  QSISQGGSLVTTGRSLDLAISGGGFFVTRGGNG---------------------DVSYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  A++     N + + +Q    DA              +  +  +        A   
Sbjct: 97  AGVFGADKDNNIVNAAGQTLQGYPVDAAG---------NLQVGAMGDLQLQTANLPARAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D   F+   D      ++ +  +      +     ++  T +F++  ++    +    T 
Sbjct: 148 DTLAFVMNLDS-----NQTVPATAPFDPADVNTYNSTYTTKIFDSQGKEHTLTQYFIKTG 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +  +  G                                              +  
Sbjct: 203 DNAWDVRYYQGNTAVGGP---------------------------------------QAL 223

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               N          +    L       I+     + QY S+     +  S         
Sbjct: 224 TFGTNGTLTAPAGPVNVGFALPGVDPMAIAIDYSNSSQYGSDFVVTTNRASGYAAGEQTG 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +  +Y +          +A       L +   +   W+E   S +  + +  
Sbjct: 284 LSVEKDGMVYANYSNGQRMLQGQVALATFANAGGLKDV--SGTAWVETADSGAALIGVPG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              F  +         V+L ++L  L++ +++Y  + K++    ++ Q L   +
Sbjct: 342 VGPFGALVAGSLENSNVDLTQQLVGLMEGQRNYQANTKVLTTNKELTQVLFGAI 395


>gi|153948570|ref|YP_001399634.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758]
 gi|152960065|gb|ABS47526.1| flagellar hook protein flgE [Yersinia pseudotuberculosis IP 31758]
          Length = 402

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/477 (11%), Positives = 112/477 (23%), Gaps = 83/477 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
            F+ A    N  ++Q  +I  NI N+  K +    T          P  VTV        
Sbjct: 2   SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFASMYAQSQPLGVTVSGVSQ--N 59

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              D         +        F  ++E         +         R  ++ Y  N   
Sbjct: 60  IGKDGQKDKTGMGLDLAISGGGFFVVREN------SGDKAYTRAGMFRSDVDGYLVNGQG 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L     D+A  +     +                +L+I+N        T ++     +
Sbjct: 114 MKLQGYPADDAGNIQAGIIS----------------DLKINNAGVPAKASTNLDFMANLE 157

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +   +    +  D      +    +   +   + +  Y     T     P        
Sbjct: 158 AGATVPSVTTFNAGDQNSYNFTTTSTVYDSLGREHAVAHYFIKSATTTSAAPNQWTVRHS 217

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              TV +  + +            SA   G           +   +              
Sbjct: 218 IDGTVATAHHTLQFTNTGALIPSSSAKLTGTFNPAGAADYDIDIDYTGTTQLNQGFTTTR 277

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                  +G                                                   
Sbjct: 278 NKSDGYTSGVKNGER--------------------------------------------- 292

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +   + +          +A   +   L+   +N   W E N+S +  
Sbjct: 293 -------IESDGSVYATFSNGERMLQGKVVLANFASPSGLVT--QNGTSWSESNKSGAAL 343

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           L      +   +         V++  EL  L+  +++Y  S K+I   D M+  L +
Sbjct: 344 LGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMMNALFQ 400


>gi|229029434|ref|ZP_04185517.1| Flagellar hook protein flgE [Bacillus cereus AH1271]
 gi|228731893|gb|EEL82792.1| Flagellar hook protein flgE [Bacillus cereus AH1271]
          Length = 409

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/478 (8%), Positives = 106/478 (22%), Gaps = 69/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N      +    NI NA    Y ++  M                +  +
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMF---------------DDLL 45

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           ++  + +           +S     +M      Y++                        
Sbjct: 46  YNNSIGSKGDNKYAGTNPKSIGNGVKMSGTVTDYSDGTITLTGG---------------- 89

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                           +++   ++  R                       ++        
Sbjct: 90  -KTQAAMEGNGFFVVGDSAGGNMEFTRKGTFG------------------ISSNYYITNT 130

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                  +          +S I G   I        + T+ GT        +    +   
Sbjct: 131 EGQYVFAYPANAATGEVDLSGIPGPLQIPMGTAIGGIQTTKGTIKGNIPVNESKITQDLP 190

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +   + +          +++                        Q + D          +
Sbjct: 191 FYDDAGNTWTMRVEFTKTNDHEYTY-----------------KVQRRNDSAKDPKFEEVT 233

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                     +  G                 I+        + ++ +             
Sbjct: 234 GAGSTGTLKFDKVGNPDPVQQGAAIPFNGGTINLDFSQLTNHPTDKTLSVTDVDGRAAAT 293

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +A    ++  Y D   K+     VA       L++       +   N +    L 
Sbjct: 294 VKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALG 351

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Q     +         V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 352 ASGQNGAGKVRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 409


>gi|227820875|ref|YP_002824845.1| flagellar hook protein FlgE [Sinorhizobium fredii NGR234]
 gi|227339874|gb|ACP24092.1| putative flagellar hook protein FlgE [Sinorhizobium fredii NGR234]
          Length = 404

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/480 (7%), Positives = 112/480 (23%), Gaps = 76/480 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL        +  N  + + +++  NI N+    Y R  T  +                
Sbjct: 1   MSLYGTMRTGVSGMNAQANRLSTVAENIANSSTTGYKRASTEFSSM-------------- 46

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     SS                +         +    ++   D          +
Sbjct: 47  -------ILPSSNGSYNSGGVETSVRYSISDQGSTTYTTSASDLAIDGDGFFIVQGANGQ 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           + L +      ++     N +   +     +A  +  + ++            +      
Sbjct: 100 EYLTRAGAFVQDDSGNLVNAAGFTLMGYEYEAGVDPTVVVNGFDGLTEVNLASDGLTAAG 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +     +            + ++             VY + G T           +  
Sbjct: 160 STAGAMGANLPSGAANGDVSTTSLV-------------VYDTQGNTRILDFNYTKVADNQ 206

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
               +   ++   +    +  +                                      
Sbjct: 207 WELDIVDRTSATSLGTATLDFDADG----------------------------------- 231

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                 +  +   +                   I+       Q  ++ +        +  
Sbjct: 232 -----VLTTSPATLTLDGTLISPITGTGAELNNITIDFTETTQLGTSFTPDGGSIDGNAP 286

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +   +     +   Y +   +      +A + +   L+  + N         S    
Sbjct: 287 SKVSGYQIDTDGVVYIKYANGELEPRYRIALASVQSPDKLVPESGNVYSQ--GVDSGVIV 344

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   F  I      +  V++ +EL+ +I+ +++Y  ++K+     ++L+ L+   +
Sbjct: 345 TGFAGSGSFGEILSGALESSNVDIADELTSMIESQRNYTANSKVFQTGSELLEVLVNLKR 404


>gi|163803169|ref|ZP_02197052.1| flagellar hook protein [Vibrio sp. AND4]
 gi|159173069|gb|EDP57902.1| flagellar hook protein [Vibrio sp. AND4]
          Length = 399

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/474 (9%), Positives = 107/474 (22%), Gaps = 76/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D+                 ++    +   L  
Sbjct: 59  NFDKNGSVTGTGRAMDLAINGSGFFVTKDNMGQMLYTRAGVFGTDKNNFVTANNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +                   ++  +  +I++  S+L    ++             +  
Sbjct: 119 YSV--------------DNNANLQTGSVGDIKVSTSSLNAKATDNLDFVANFDASATAVD 164

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 D  D      S    +                   L  +      F K +    
Sbjct: 165 QTVYPFDSSDPNSFNSSYTTKVYDS----------------LGNSHTVTQYFTKTSDNEW 208

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                         ++        G +                                 
Sbjct: 209 QVNVEVNGAPTTPATAQTVQFNTDGTLA-------------------------------- 236

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                          +            I  ++  + Q+ ++     +  +         
Sbjct: 237 ---------SPTGSFNIAFPAAGANAMSIDISLNGSTQFGASFGVSTNNPNGYTSGELAG 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L +   +   W +   S +  + +  
Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKV--SGTSWTQSFSSGAPIMGVPG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                +++        V+L  EL  L+  +++Y  + K I   DK+ Q L   V
Sbjct: 346 TGTLGNLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399


>gi|90422393|ref|YP_530763.1| flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
 gi|90104407|gb|ABD86444.1| Flagellar hook-associated protein [Rhodopseudomonas palustris
           BisB18]
          Length = 588

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 150/430 (34%), Gaps = 22/430 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL    + A +   N   Q +    NI NAD   Y  +           +     +   
Sbjct: 1   MSLDIARSIAVSSLMNTQVQISVTSSNISNADTTGYTVKTANQAAVVNAGTGAGTVITGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA----DDHYNNSPTHYISKLRDSL 111
            S    +  K L    SA+G       +    + +      DD    S  + I+ L  ++
Sbjct: 61  TSTVDKLLMKSLIQADSALGAADTNNDYLDQLQALYGSTADDDSSGTSLANTIAALETAI 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            S S   S   L   V+   +++      ++  +Q +R++AD+EI   + ++   L  + 
Sbjct: 121 TSLSATSSSAALQANVVSALDDLATQLRDTSSGIQDLRSNADQEIATAVDDVNEQLQTIA 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N AIK   A+     D  D+R+  +Q I+  + IS  + +  DM VYT+ G  L +T 
Sbjct: 181 NLNAAIKLAAAAGQSTADLEDKRNTAVQDIATKMNISYFISSTGDMQVYTASGQALVDTR 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDG----VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             +++F   ++ T +S  +           V   +  + +  G+I AL+ +RDS +P  Q
Sbjct: 241 AHELSFTASSTVTASSSYSATSSSTLSGVTVNGVDVTAQISSGEIGALIALRDSELPAAQ 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QLD++A  L  S +       +               L           +      R  
Sbjct: 301 AQLDQLATQLADSLNTVSNTGTSLPPPA---------TLTGTTAVAADTALDATGTVRIA 351

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +              +     G      +     + +   D    I+++ +        
Sbjct: 352 VADQSGTLVSYADLDLSSYATVGDLVSAINGISGLSASIDSDGHLTISSSSSNGVAVNEM 411

Query: 408 IGWLEKNRSD 417
              +  +   
Sbjct: 412 TSSVGSDGKG 421



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 95/294 (32%), Gaps = 6/294 (2%)

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
                Q D L  ++++ +   +    +       +  T +      D       +     
Sbjct: 297 PAAQAQLDQLATQLADSLNTVSNTGTSLPPPATLTGTTAVAADTALDATGTVRIAV-ADQ 355

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
               +    + +SS          I  +  +  S+       +   +   +        +
Sbjct: 356 SGTLVSYADLDLSSYATVGDLVSAINGISGLSASIDSDGHLTISSSSSNGVAVNEMTSSV 415

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             + + +      + +          +   I  N         +    S       +   
Sbjct: 416 GSDGKGLSDWLGLNDLVTATGASDFAVRSDILANSGLL----QVATLDSSDTLTTGSQVL 471

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            AG   ++N    +   +  FD V G+ +   +  +YA   +  +    S + D +   Q
Sbjct: 472 SAGSATVVNALYSALTDDITFDAVGGLGSSTGSFADYASTIVSAVAAKASTAEDTYTAKQ 531

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +  + + ++  GVNL EE + L  ++  Y+ +++LI   ++M  +LL+ V+
Sbjct: 532 TAQSTFASALASQSGVNLDEETARLSTLQNQYSAASQLIQAINEMFSSLLQAVQ 585


>gi|119503644|ref|ZP_01625727.1| flagellar hook protein [marine gamma proteobacterium HTCC2080]
 gi|119460706|gb|EAW41798.1| flagellar hook protein [marine gamma proteobacterium HTCC2080]
          Length = 410

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/473 (11%), Positives = 112/473 (23%), Gaps = 65/473 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +    A      I  NI NA    +            +                
Sbjct: 2   AFSTAISGIKAAQANLDVISNNIANASTVGFKASRAQFAEIYASSVSGG----------- 50

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                   +    +   F        + D   +     IS     + S +        G 
Sbjct: 51  --SNAGQGVELTEIRAEFSQ-----GSLDFTGSGLDLAISGNGFFIVSNAGASEYTRAGS 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D    +      S   +Q  + + D  I                             
Sbjct: 104 FQVDRDGFLTN---ESGNRLQGYQGNTDGVITG--------------------------- 133

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                         ++ ++   +T+V       V  +      E VP    F   +  + 
Sbjct: 134 --------------ELGDLFIDTTLVDPKVTSKVTITSNLDSREAVPTTATFAPTDPTSY 179

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            S ++    D +  S        K       ++  SV          +           +
Sbjct: 180 NSTTSTTIYDSLGNSHVLQLYYVKQSAANTWKVHTSVDGGTPPAATTITFD-SDGTLATN 238

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                S   P   +               S  I    Q  S+ S                
Sbjct: 239 SANAISITTPANELLSASGVATGAAALAYSVDILATTQLGSDFSVNSAIQDGYGAGQLIS 298

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                       Y +  ++      +A    N  L     +   ++E   S   ++ +  
Sbjct: 299 FEFDDSGTAFARYTNGQSRAIGQVALASFRNNNGLQPVGGS--NYVESFGSGGPNIGVPG 356

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +I  S      V++ +EL  LI  ++++  + ++I   D+  Q ++  
Sbjct: 357 NSGRGNIQSSAVEQANVDITQELVNLIVAQRNFQANAQVISTEDQATQAVINL 409


>gi|283955493|ref|ZP_06372988.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792954|gb|EFC31728.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 545

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 136/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVTQR 56
           ++  F    +     S        NI N +   +   D         TI+ ++       
Sbjct: 1   MMNSFYNGISGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             + +    V+    S +            K          N+        +     Y  
Sbjct: 61  YGSGSASSNVVFEQGSLVASDSEFDVALQGKGFFGVLGADGNAYYTRNGSFKRDANGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + +  T+      +  +   +      +           +++   F    T    A
Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTLVNNGFTVNSNNSFGIGTTASQGA 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTL-------- 227
           IK             + +       +    +    +      +  T DG  +        
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDPGKFNITKTEDGKYVVSGSVSKE 240

Query: 228 ---------------FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS----------- 261
                           +      +FE      +  +SN + + G+  +S           
Sbjct: 241 DVFSAKVGDRIILNFTDDNGVKKSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 262 ---------NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L  + + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVMLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   +++    ++  + +  N       +        L     N       + 
Sbjct: 421 DGVAEGFFKQYDISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKNGQIVNTAKFKGGFLEQSNVDLSVELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|303248233|ref|ZP_07334496.1| flagellar hook-associated protein FlgK [Desulfovibrio
           fructosovorans JJ]
 gi|302490371|gb|EFL50282.1| flagellar hook-associated protein FlgK [Desulfovibrio
           fructosovorans JJ]
          Length = 696

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/435 (9%), Positives = 112/435 (25%), Gaps = 14/435 (3%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQRSEN 59
            ++    +         NI N D + Y ++  +                 V         
Sbjct: 11  GRSGLTASQAALQVTGNNIANVDTEGYSKQSVVLVDGNYITSSPGQLGSGVVAQEVVRSY 70

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +      +  S   + + L +     +    ++   N     +S +       + N +
Sbjct: 71  DALTQSQYLSQISVRDRWKALYNGLTSIQSYF-NESNTNGANAALSTVFGDWGDLTANTA 129

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           +    +T++++   ++  + + A  ++  +A  D  I  +++ L +   ++  +N  I  
Sbjct: 130 DTATRQTMLEDTNTLLSIYRSMASSLEDQKAALDTAITDDVATLNQLAKDVADINRQINQ 189

Query: 180 KTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
                    +   D RD  ++ I+ ++ ++ +     D  VYT  G T+ +         
Sbjct: 190 HQIDGKSIPNGLYDLRDSKVENIASMVDVNVVDNGKGDYTVYTKSGQTIVDGTEAYSFDY 249

Query: 239 KMNSYTVTSESNPIFIDGVVV--SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           K         +  +  +           S     ++     +                  
Sbjct: 250 KQGQTVRQLSAASLAANSDAQCYYEGTDSHEYTVRVVNTGGVGTGATFKVSLDGGHSWLT 309

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                +        +  V    +      +++      S+    +         L    +
Sbjct: 310 DANGNTAIYQAEDTTGKVKVGDLDIWFGQMNDSGTAPTSDLNAGDTFTLVPKKALYWHTT 369

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +     +  A   D             +      +      L+   NS+ W      
Sbjct: 370 AGTEENVTPQLHADGTDDERRLTGGALAGALLLRDENLAGYQDSLDATVNSMVWEINRIH 429

Query: 417 DSHDLHMKSQVVFNH 431
                      V   
Sbjct: 430 SQGAGLTNFSSVQGT 444



 Score = 99.7 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 83/279 (29%), Gaps = 8/279 (2%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T+     ++    S G  L         +  ++S      +      G  ++S       
Sbjct: 417 TVNSMVWEINRIHSQGAGLTNFSSVQGTYGVVDSNAALGSNQAGLTYGNRLASGAAMIYV 476

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                 L       +      L++    +  +FS     +  +  +     +       +
Sbjct: 477 YDANGNLASSDGIWMDPTATTLNDFVTSINTAFSGTLNASVVNGRLAISAASGYSFQFGD 536

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL--------WNVKNLAGYPDLINHYCD 380
                ++          S  S +     V+             +    +G          
Sbjct: 537 DSSGILAALGVNTLLTGSTASDVAINSVVTGDTNRVNVGHVGTDGLTASGDNTTAKSMTG 596

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
             +K   F        N T+  Y    +G +  + + ++        + + I +   +  
Sbjct: 597 LADKKVDFFVTGKATANQTISGYYGAMVGQVGADTASANYQATYQTALASQIKDQKLSIS 656

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           GV+L EEL+ LIK + +Y  + KLI   D + QT+L   
Sbjct: 657 GVSLDEELTNLIKFQHAYQAAAKLISTADSLFQTVLGLK 695


>gi|295110886|emb|CBL27636.1| Flagellar hook-associated protein [Synergistetes bacterium SGP1]
          Length = 442

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/437 (11%), Positives = 124/437 (28%), Gaps = 17/437 (3%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +    T  T         D  L + S   G             +++ D    ++ T   
Sbjct: 14  TAVSGPTTGTATQFYVESKDHRLISISDVEGSLAKRMGIVNKASVVTIDVEETDTLTTIR 73

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +K+ +  ++     + +      +    +       ++    + +             + 
Sbjct: 74  NKINEKYQAELGITAPEEWVHASLKQDSDQSWYLTIASDVPGEAQRITLMGGADGNDQVL 133

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
           R L  + +        T       +      V         G+  +  +N          
Sbjct: 134 RRLGLMRLEQIGTVSATDKTPVYREVAAISTVAEDASFTFNGVRYLSSDNRFKE------ 187

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDS 281
                 +P        ++  +      ++ +       +      V  G IKAL + RD 
Sbjct: 188 ---ARRIPASGGSSDYSASKLAQVEEGMWFNLKHAGSTAITVRHHVRSGTIKALEEARDG 244

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
           ++P  Q QL+++   L+   +                     K L  +     +  + VN
Sbjct: 245 IIPNLQGQLNDLTWGLVNHVNAYQYSGYGIGGDITTTGVAFFKPLGTRT--RAASNLSVN 302

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               ++ + +   G+   +       ++G         ++     +          +T+ 
Sbjct: 303 DAVVADNALI---GAAMGRKNAAGVAVSGVSGGSGDGSNALRMANLASARVLKGGTMTIR 359

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
                 +  +    + +  +      +   I        GVNL EEL  +I + + +   
Sbjct: 360 GVYDAMLSQVGSKAAHAQLMSTAQDSLAEQIGLQREAVSGVNLDEELMDMITLNRCFGAM 419

Query: 462 NKLIMFTDKMLQTLLEG 478
           ++ +   D+ML  ++ G
Sbjct: 420 SRYVTTVDEMLNAIING 436


>gi|330818578|ref|YP_004362283.1| flagellar hook-associated protein FlgK [Burkholderia gladioli BSR3]
 gi|327370971|gb|AEA62327.1| flagellar hook-associated protein FlgK [Burkholderia gladioli BSR3]
          Length = 661

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 114/404 (28%), Gaps = 16/404 (3%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
             + N   +  N A     +  +NI N     Y     +             SP  VT V
Sbjct: 3   SNLLNLGLSGINAALWGINTTGQNISNQATPGYSVERPVFAESDGQYTPNGFSPSGVTTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +        L++ ++         +  A       +          IS     L++
Sbjct: 63  TVQRQFSQYLSDQLNSANTTASALSSYSALVATLNNYVGNPSA--GIGAAISSYFSGLQT 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N       +T +   + +    N +  +   +R   +++++  ++++    +++  +
Sbjct: 121 VANNAGNQSTQQTALAAGQTLASQINAAGAQFDALRTQVNQQLQSSVTSVNALTAQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I    +     +  LDQRD  +  +S+ +G+    + N +  V   +G  L      
Sbjct: 181 NQQISAAGSQGQPPNQLLDQRDQAVASLSQYVGVQVT-QVNGNYNVSIGNGQPLVVGNNS 239

Query: 234 DINFEKMNSYTVTS---ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                  ++   +                +    S+V  G I   LQ R   +   + QL
Sbjct: 240 YQLSTAPSAADPSELSLTVQGTVNGAATTTVVPDSSVTGGSIGGALQFRTQTLDPAEAQL 299

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +A       + ++ +  +     G  + +                        +    
Sbjct: 300 GAIAVSFAAQTNAQNALGVDLNGKVGGNLFNLPTPTTITNANNTGNATLTAAFDNAQQPP 359

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
             D         + + N                   +     G 
Sbjct: 360 TSDFTLSYDGTTYTLTNKTTGTVAGTANSLPATLGGLKLSATGT 403



 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/449 (11%), Positives = 104/449 (23%), Gaps = 6/449 (1%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD- 94
           YV           NV++   +          L    SA     L  + +      +    
Sbjct: 211 YVGVQVTQVNGNYNVSIGNGQPLVVGNNSYQLSTAPSAADPSELSLTVQGTVNGAATTTV 270

Query: 95  -HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
              ++     I                 +    V   A+   QN        +      +
Sbjct: 271 VPDSSVTGGSIGGALQFRTQTLDPAEAQLGAIAVSFAAQTNAQNALGVDLNGKVGGNLFN 330

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
                 I+N     +           +  +      +      L  K +  +  +     
Sbjct: 331 LPTPTTITNANNTGNATLTAAFDNAQQPPTSDFTLSYDGTTYTLTNKTTGTVAGTANSLP 390

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
                +  S   T+       I   +    +    S      G  V + + +        
Sbjct: 391 ATLGGLKLSATGTMQPGDSFTIEPTRGALNSFGVVSGATIASGAPVFAQKTATNTGTGAI 450

Query: 274 ALLQIRDS----VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
               +                     +          I         +  A+     D  
Sbjct: 451 TAGSVTTGYQIPSSTTTLTYNAASKSLTGFQVGTTVTIGTTPPTTVAITDANTQVPYDAS 510

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               ++ T  V P   +N                +   + G     N   ++   + +  
Sbjct: 511 KGATLTITSTVQPPTDTNLMNNVTVSVSGAPADGDTFTIQGGSSGTNDGRNAQLLSALAT 570

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
             A    + TL     + +  +    +           V + I+    +  GVN  EE  
Sbjct: 571 SKAFDGGSTTLSAAYSSYVNNVGNAAASLSARSSVQAGVVSQITTQQQSVSGVNQNEEAV 630

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L++ +Q Y  + K+I     +  TLL  
Sbjct: 631 NLMQYQQMYQANAKVIQTASTLFSTLLGI 659


>gi|192289145|ref|YP_001989750.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           TIE-1]
 gi|192282894|gb|ACE99274.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           TIE-1]
          Length = 587

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 162/424 (38%), Gaps = 17/424 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL    + A +       Q +    NI NAD   Y ++      S        VTV   
Sbjct: 1   MSLNIARSIAFSGLAATQVQISVTSANISNADTTGYTKKTAGQASSVTGGVGTGVTVTGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109
            S    +  K L A +S +G      S+    +                S  + ++ L  
Sbjct: 61  TSSVDKLLLKSLIAANSDLGAADTTNSYLTSLQQFYGSSTSATSTSTGTSLANTLASLES 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L S +   +   L   V+D  + V      ++  +QK+R++AD++I   + ++   + +
Sbjct: 121 ALSSLASTPTSSALQSNVVDALDSVTSQLRETSSGIQKLRSNADQDIASAVGSVNDDVQK 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N AIK   A+     D  D+R+  LQ +S  + +S    +N D+ VYT+ G  L +
Sbjct: 181 IADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQMNVSYYTASNGDLQVYTATGQALVD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +    +++    S +  +        G++++  +  S +  GKI AL+ +RD  +P  Q+
Sbjct: 241 STAHPLSYTTTASVSAVTSYGSGGFSGIMLNGVDVTSQITSGKIGALVALRDQTLPAAQS 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QLDE+A+ L  S +              L                +S T  V      + 
Sbjct: 301 QLDELAQQLAVSLNAVSNGQTTLPAPASL-----TGTATLSSSDALSATGSVRLAVTDSS 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L   G +      +V +L    + ++    S + +      A  +     +    +S+
Sbjct: 356 GRLVSYGDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGVSIGELSSSV 415

Query: 409 GWLE 412
           G   
Sbjct: 416 GSAG 419



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/418 (10%), Positives = 112/418 (26%), Gaps = 9/418 (2%)

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            S+       +Q    L   +        S      K   +L+  S              
Sbjct: 168 ASAVGSVNDDVQKIADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQ-MNVSYYTASNG 226

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           + +                 +         +++         ++N        +      
Sbjct: 227 DLQVYTATGQALVDSTAHPLSYTTTASVSAVTSYGSGGFSGIMLNGVDVTSQITSGKIGA 286

Query: 190 FLDQRDVLL-------QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  RD  L        ++++ + +S    +N    +      T   T+          S
Sbjct: 287 LVALRDQTLPAAQSQLDELAQQLAVSLNAVSNGQTTLPAPASLTGTATLSSSDALSATGS 346

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +    +   +                 + A+  +      I  +   ++A     +  
Sbjct: 347 VRLAVTDSSGRLVSYGDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGV 406

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++ +  +    F      +            +  +     +   L    + +    
Sbjct: 407 SIGELSSSVGSAGEGFSDYFGLNDLVTATGASDIAVRSDILSGKSSLSLATLSAAAVLTT 466

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRSDSHDL 421
            +    +      N   D+   +  F  V G+     +  ++A   +  +    S +   
Sbjct: 467 GSSVLSSDGASAANALYDALTGSTSFKAVGGLAAVTGSFADFASTIVSSVAGKASLASST 526

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +   +   +  + S S+  GVNL EE + L +++  Y  +++LI   + M   L+  V
Sbjct: 527 YSVKEAAQSTYANSLSSQSGVNLDEESARLSELQNKYTAASQLIQAINAMFTALVSAV 584


>gi|187926954|ref|YP_001893299.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J]
 gi|241665283|ref|YP_002983642.1| flagellar hook protein FlgE [Ralstonia pickettii 12D]
 gi|187728708|gb|ACD29872.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J]
 gi|240867310|gb|ACS64970.1| protein of unknown function DUF1078 domain protein [Ralstonia
           pickettii 12D]
          Length = 402

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/473 (11%), Positives = 118/473 (24%), Gaps = 72/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + +GQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQVGQGVEVTRVSQ--------------------SFTQGNVTITGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T      +      + +R  Q              ++   ++   T  N       ++  
Sbjct: 87  TGFYRMVDTASGQVSYSRNGQFQ------------TDKNGYIISATGQNLTGYGVDSTGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  ++ +   +T    N D             T P    F   NS T 
Sbjct: 135 VNTAVLTNLQIPVNDLAPLATTNTAFGINLDAA----------ATAPTTTPFSPTNSATF 184

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +    DG   +    +   +                  +   ++        +   
Sbjct: 185 NHSVSEQVYDGTGTAHMLTNYYVRTATGW-------------DVYSQVDGNNPTGGNPVT 231

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +  NS        +             +  T         N +                
Sbjct: 232 TLTFNSNGQLTSTPSKIAVSFAGMSIASMDFTGTTQYGGGYNDTAPGVTQDGYATGRLAS 291

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +A       L     N   W+E + S + +L    
Sbjct: 292 YSVGTDGTITARYSNGRTATLGQIAMANFKAPEGLQNIGGNQ--WVETSNSGAPNLGTPG 349

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L +EL  +I  ++SY  + + I   D +LQTL+  
Sbjct: 350 MGSFGLLQSSAVEQSNVDLSQELVNMIIAQRSYQANAQTIKTQDTILQTLVTM 402


>gi|283955452|ref|ZP_06372950.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793079|gb|EFC31850.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           414]
          Length = 544

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/543 (10%), Positives = 136/543 (25%), Gaps = 67/543 (12%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSE 58
             F    +     S        NI N +   +   D           + ++         
Sbjct: 2   NSFYNGVSGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTVTTQSTNPAQGGYG 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + +    V+    S +            K         NN+        +     Y  + 
Sbjct: 62  SGSASSNVVFEQGSFVASDSEFDVALQGKGFFGVLGADNNAYYTRNGTFKRDANGYLVDS 121

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN---------------- 162
             + +  T+      +  +   +      +           +++                
Sbjct: 122 YGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNNGFTVNSNDSFSIGTTASQQAIK 181

Query: 163 --LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN----- 215
             +  +L      N        +           D     I++      +V  +      
Sbjct: 182 VPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVNLDPNKFNITKTEDGKYVVNGSVSKEDV 241

Query: 216 -----------DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN-- 262
                      +        T+   T+  ++NF+         + N I +D V +++   
Sbjct: 242 FSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNKLDLKGLDENSIKLDTVQIATEQQ 301

Query: 263 --------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
                          G    L  + + V+P   + +   A   I   +          N+
Sbjct: 302 KANKDILESDIYNADGSKSTLRVLLERVLPQEGDNIQYKAIAQIYDSNGNAVGDPTEGNM 361

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGGSV 357
                   +++    +      TI ++     + S                  +      
Sbjct: 362 VFDKNGALLQNNITSIANPNGGTINIDLGTPYDASKPGSGYGGIYIKEGVEKNVVTQQDG 421

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +  +   N++    +I  + +  N       +        L     N       + + 
Sbjct: 422 VAEGFFKQYNISDDGSIIAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGNA 481

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S  +     V        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  + 
Sbjct: 482 SFIMKNGQIVNTAKFKGGFLEQSNVDLSVELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541

Query: 478 GVK 480
             +
Sbjct: 542 MKR 544


>gi|39933725|ref|NP_946001.1| flagellar hook-associated protein 1 FlgK [Rhodopseudomonas
           palustris CGA009]
 gi|39647572|emb|CAE26092.1| possible flagellar hook-associated protein 1 (HAP1, FlgK protein)
           [Rhodopseudomonas palustris CGA009]
          Length = 587

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 164/424 (38%), Gaps = 17/424 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL    + A +       Q +    NI NAD   Y ++      S        VTV   
Sbjct: 1   MSLNIARSIAFSGLAATQVQISVTSANISNADTTGYTKKTAGQASSVTGGVGTGVTVTGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109
            S    +  K L A +S +G      S+    + +              S  + ++ L  
Sbjct: 61  TSSVDKLLLKSLIAANSDLGAAGTTNSYLTSLQQLYGSSTSATSTSTGTSLANTLASLES 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L S +   +   L   V+D  + V      ++  +QK+R++AD++I   + ++   + +
Sbjct: 121 ALSSLASTPTSSALQSNVVDALDGVTSQLRETSSGIQKLRSNADQDIASAVGSVNDDVQK 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N AIK   A+     D  D+R+  LQ +S  + +S    +N D+ VYT+ G  L +
Sbjct: 181 IADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQMNVSYYTASNGDLQVYTATGQALVD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +    +++    S +  +        G++++  +  S +  GKI AL+ +RD  +P  Q+
Sbjct: 241 STAHPLSYTTTASVSAATNYGSGGFSGIMLNGVDVTSQITSGKIGALVALRDQTLPAAQS 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QLDE+A+  + S +              L     +   D      +S T  V      + 
Sbjct: 301 QLDELAQQFVVSLNAVSNGQTTLPAPASLTGTATVSSADA-----LSATGSVRLAVTDSS 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L     +      +V +L    + ++    S + +      A  +     +    +S+
Sbjct: 356 GKLISYSDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGVSIGELTSSV 415

Query: 409 GWLE 412
           G   
Sbjct: 416 GSAG 419



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/418 (11%), Positives = 107/418 (25%), Gaps = 9/418 (2%)

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            S+       +Q    L   +        S      K   +L+  S              
Sbjct: 168 ASAVGSVNDDVQKIADLNAAIKQAAAAGQSTADLEDKRNTALQDLSSQ-MNVSYYTASNG 226

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           + +                 +          +N         ++N        +      
Sbjct: 227 DLQVYTATGQALVDSTAHPLSYTTTASVSAATNYGSGGFSGIMLNGVDVTSQITSGKIGA 286

Query: 190 FLDQRDVLL-------QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  RD  L        ++++   +S    +N    +      T   TV          S
Sbjct: 287 LVALRDQTLPAAQSQLDELAQQFVVSLNAVSNGQTTLPAPASLTGTATVSSADALSATGS 346

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +    +   +                 + A+  +      I  +   ++A     +  
Sbjct: 347 VRLAVTDSSGKLISYSDLDLSSYTSVGDLVNAINGVSGLSASIDSSGHLKIAATASNTGV 406

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               +  +  +    F      +            +  +     +   L    S +    
Sbjct: 407 SIGELTSSVGSAGEGFSDCFGLNDLVTATGASDIAVRSDILSGKSSLSLATLSSAAALTT 466

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT-NVTLLEYARNSIGWLEKNRSDSHDL 421
            +    +      N   D    +  F  V G+     +  + A   +  +    S +   
Sbjct: 467 GSSVLSSDGASAANALYDVLTGSTSFKAVGGLAAVTGSFADIASTIVSSVSGKASQASST 526

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +   +   +  + S S+  GVNL EE + L +++  Y  +++LI   + M   L+  V
Sbjct: 527 YSAKEAAQSTYANSLSSQSGVNLDEESARLSELQNKYTAASQLIQAINAMFTALVSAV 584


>gi|57505769|ref|ZP_00371695.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
 gi|57016042|gb|EAL52830.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
          Length = 545

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/545 (9%), Positives = 134/545 (24%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++  F    +     S        NI N +   +   +        +       +  +  
Sbjct: 1   MMGAFYNGISGVKINSFGIDISANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGG 60

Query: 61  ----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +   K++    S +  +         K                    +     +  
Sbjct: 61  YGSTSASSKLVFEQGSPVASEGEFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN-------------- 162
           +   + +  T+    + +  +   +      +           +++              
Sbjct: 121 DSYGNFVLGTMNPAFQGITYSDRVAGLMGDYLNTGTPVNNGFTVNSNDKFTLGTTGSQGA 180

Query: 163 ----LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI--------------SEI 204
               +  +L      N   K    +           +    K+              S+ 
Sbjct: 181 LQVPINMYLPPKVTQNVQWKGNLNTNTKTEVVTIDLNPGNFKLEKTADGKFKVSGSVSQN 240

Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
              S    +   +     +G   +   T+ +D+NF          +++ + +D V +S+ 
Sbjct: 241 EVFSAKENDRILLNFIDKNGVKQSFEATLDKDLNFVSKELDLKGLDADSVKLDSVQISTE 300

Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQL-------DEMARVLIGSFSEKD 305
                            G    L    + ++P   + +          A+        + 
Sbjct: 301 QQKANKDILEAPIYNADGSKSTLRLTLERILPQVGDTMVYKATAQIYNAKGEAVGEPTEG 360

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG---------- 355
            +  N            + + +         T        S  S +              
Sbjct: 361 SMTFNQHGALLSNDIKSVNNPEGGAINIDLGTPYDPNIAGSGYSGIYIQAGKEKSVITRH 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  ++   +    +LI  + +          +        L+    N       + 
Sbjct: 421 DGIAEGFFDQYRIGDGGELIAQFSNGQTAIVGKIALYNFINEQGLMAMGDNIFAATGNSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     V        +     VNL  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 EASFIMKDGEIVNTAKFKGGFLEQSNVNLSMELSNLIVTQRAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   K
Sbjct: 541 INMKK 545


>gi|316936120|ref|YP_004111102.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           DX-1]
 gi|315603834|gb|ADU46369.1| flagellar hook-associated protein FlgK [Rhodopseudomonas palustris
           DX-1]
          Length = 587

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 161/421 (38%), Gaps = 16/421 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL    + A         Q +    NI NA    Y  +    +           T+   
Sbjct: 1   MSLNIASSIALGSLMTTQVQISVTSSNISNASTTGYTVKTANQSATVTGGVGTGTTITGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISKLRDSLES 113
            S    +  K L   +SA+G      S+    + +     D  N S    ++ L  +L S
Sbjct: 61  TSTVDKLLLKSLVQATSALGSANTTNSYLDQLQALYGTSGDSSNTSLADTLTTLEQALSS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            S + S   L   VI   + +   F  ++  +Q +R+DAD+ I+  + ++   L+ +  +
Sbjct: 121 LSSDPSSSSLKANVISALDTLATRFRDTSSGIQDLRSDADQSIDDAVDDVNEQLNLIAGL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I+  +AS     D  DQR+  +Q+I+  + +S  + ++ DM +YT  G  L ++   
Sbjct: 181 NAQIRLASASGQATGDLEDQRNTAVQEIASRMNVSYFISSSGDMQIYTGSGRALLDSTVH 240

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSS----NQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           ++++    + T ++  +     G    +    +    +  G I AL+ +RD+ +P  Q Q
Sbjct: 241 ELSYTPAATVTSSTTYSASSTGGFSGITVDGVDVTGQISSGSIGALIVLRDTTLPAAQAQ 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD++A  L  S +    +         L     +   D      ++ T  V         
Sbjct: 301 LDQLATELADSLNAVSNLGSALPPKSTLTGITAVTASDA-----LNGTGTVRIAVTDQKG 355

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            L   G +       V +L    + I+    S + +     VA  ++N   +     S+G
Sbjct: 356 ALVSYGDLDLASYATVGDLVNAVNGISGLSASIDSSGHVVIVASSSSNGIAIANMTGSVG 415

Query: 410 W 410
            
Sbjct: 416 D 416



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L   +P       + + T +   N      + V+  +G+ V  G +          +   
Sbjct: 318 LGSALPPKSTLTGITAVTASDALNGTGTVRIAVTDQKGALVSYGDLDLASYATVGDLVNA 377

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            N +  ++  +  S       + +S  +    +   + D    L   +     V     +
Sbjct: 378 VNGISGLSASIDSSGHVVIVASSSSNGIAIANMTGSVGDDSLGLSDYLGLNDVVTATSAA 437

Query: 347 NPSFLRDGGSVSK------------KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           +        + S                 +    AG   + +    +      F  V G+
Sbjct: 438 DFKVAAGLLADSSKLPTSSLSSASSLTAGSTVLSAGSSTVTDALYSALTGTTNFAAVGGL 497

Query: 395 NTN-VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
             +  +  +YA   I  +    S + D +   Q   + +S + S+  GVN+ EE + L  
Sbjct: 498 GASDSSFADYAAEIIAHVATIASAAEDAYTAKQTAQSTLSSALSSQSGVNVDEETAKLSN 557

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++  Y  + +LI   ++M   LL  V+
Sbjct: 558 LQNQYAAAAQLIQAINEMFDALLSAVQ 584


>gi|297516687|ref|ZP_06935073.1| flagellar hook-associated protein FlgK [Escherichia coli OP50]
          Length = 247

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +  + N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSNLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   V++     +  ++G +L + 
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 238

Query: 231 VPRDINFEK 239
                    
Sbjct: 239 STARQLAAV 247


>gi|305432527|ref|ZP_07401689.1| flagellar hook protein [Campylobacter coli JV20]
 gi|304444566|gb|EFM37217.1| flagellar hook protein [Campylobacter coli JV20]
          Length = 545

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/545 (10%), Positives = 141/545 (25%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENV 50
           ++  F    +     S        NI N +   +   D                   +  
Sbjct: 1   MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY------- 103
                 S           A           + F  +        +  N            
Sbjct: 61  YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120

Query: 104 -------ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                  +  +  +    S +     L    ++    V   F  ++ +   I   A + +
Sbjct: 121 DSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNSGFTVNSNDAFNIGTTASQGV 180

Query: 157 ------ELEISNLRRFLSELTVVNDAIK------FKTASKHDAHDFLDQRDVLLQKISEI 204
                       + + +     +N              +K +     D + V+   +S+ 
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDPAKFNVQKTEDGKYVVSGSVSKE 240

Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
              S    +   +     +G  T+   T+  ++NF+         + N I +D   +S+ 
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P   + +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGDNIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVEKNVVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     +        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVINTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|217976240|ref|YP_002360387.1| flagellar hook protein FlgE [Methylocella silvestris BL2]
 gi|217501616|gb|ACK49025.1| flagellar basal body FlaE domain protein [Methylocella silvestris
           BL2]
          Length = 414

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/481 (9%), Positives = 111/481 (23%), Gaps = 68/481 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    + +     + + +++  NI N+D   Y +  T            +  +   
Sbjct: 1   MSLFSALTASVSGMAAQANKLSTVSDNIANSDTTGYKQAMTEFENLISQAGTSSYNASGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    +                      N S         +        N +
Sbjct: 61  ATVVRYNISEHGNLKSTTSSTDLAIQGNGFFLVGDANGSVFLTRAGNFKPDATGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L      +        +           +   +    + +    L+     N  I  
Sbjct: 121 GFTLLGYSASSGNSSSAGLSGL------EPVNIFGDGLKAVPSTTGKLTANLNSNADIVT 174

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            +    +                               V  +      ++ +   +  + 
Sbjct: 175 GSLPSANVAG---------------------------SVYTSKTSLVTYDNLGNAVKLDV 207

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S T T+       +    +   G       +                           
Sbjct: 208 YYSKTGTNTWEASIYNAADAAPGGGFPYSGAALA-------------------------- 241

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                     N     G         L       ++  +    Q  S         + + 
Sbjct: 242 ------TQTLNFSASDGSLTGQSSISLSVPGGANVAIDLSGTTQLASAFEVSAATTNGNA 295

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                  +++    L   + +   K     P+A + +   +   A +       + S   
Sbjct: 296 PSAVQSVSISPDGTLSEVFVNGTQKAIFTIPLATVASVDNMTSLAGDVFSD--NSLSGPI 353

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +       F  I      +  V+L  +L+ +I  ++SY  ++K+     ++L TL   +
Sbjct: 354 LVGDPGLGGFGSIQSEKLESSTVDLASQLTDMIVAQRSYESNSKVFQTGSELLSTLNNML 413

Query: 480 K 480
           K
Sbjct: 414 K 414


>gi|57169039|ref|ZP_00368167.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228]
 gi|57019584|gb|EAL56274.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228]
          Length = 545

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/545 (10%), Positives = 140/545 (25%), Gaps = 67/545 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENV 50
           ++  F    +     S        NI N +   +   D                   +  
Sbjct: 1   MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY------- 103
                 S           A           + F  +        +  N            
Sbjct: 61  YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120

Query: 104 -------ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                  +  +  +    S +     L    ++    V   F  ++ +   I   A + +
Sbjct: 121 DSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNSGFTVNSNDAFNIGTTASQGV 180

Query: 157 ------ELEISNLRRFLSELTVVNDAIK------FKTASKHDAHDFLDQRDVLLQKISEI 204
                       + + +     +N              +K +     D + V+   +S+ 
Sbjct: 181 IKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDPAKFNVQKTEDGKYVVSGSVSKE 240

Query: 205 IGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
              S    +   +     +G  T+   T+  ++NF+         + N I +D   +S+ 
Sbjct: 241 DVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFKSNELDLKGLDENSIKLDTAQISTE 300

Query: 263 ----------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
                            G    L    + V+P     +   A   I   +          
Sbjct: 301 QQKANKDILESPIYNADGSKSTLRVTLERVLPQEGENIQYKAIAQIYDSNGNAVGNPTEG 360

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS-----------------FLRDGG 355
           N+        +++    +      TI ++     + +                  +    
Sbjct: 361 NMVFDKNGALLQNNITSIANPNGGTINIDLGSPYDANKPGSGYSGIYIKEGVAKNIVTQQ 420

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +  +   N++    ++  + +  N       +        L+    N       + 
Sbjct: 421 DGVAEGFFEQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSG 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             S  +     +        +     V+L  ELS LI  +++++ S+K I  +D+M+Q  
Sbjct: 481 DASFIMKDGQVINTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKA 540

Query: 476 LEGVK 480
           +   +
Sbjct: 541 INMKR 545


>gi|312879594|ref|ZP_07739394.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260]
 gi|310782885|gb|EFQ23283.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260]
          Length = 554

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 99/388 (25%), Gaps = 27/388 (6%)

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
             +      V D A        T     +      D  +  +  ++ +  +      + +
Sbjct: 169 SDDTPPVTEVYDVAYTNGNLVFTGQTNGEAWSYPVDASMTYDSFSVSKTTAPNAGDYNIL 228

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP----- 232
                   +        D      S      T+  +     V    G             
Sbjct: 229 VDFGEKTGNTMPLYLLIDNGTPPPSVAEYTVTLNDDGTFASVTQVTGPVFAGLTVDITDN 288

Query: 233 -RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQN 288
              +NF+  +S     +   + +   + S++         +     L  +   V P   +
Sbjct: 289 KYGVNFKFRDSAPGAQQVTALTVSQKISSTHSTKLDVYDTLGNPHTLEVVWSKVAPNRWD 348

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL----------------DNKLCQ 332
                        S  +       +  G   + G  DL                D     
Sbjct: 349 WNAFFPSEPTLVLSGTNGRGTLVFDTAGKITSGGTADLRVPFSVIGAEDSVIKLDFDGTG 408

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
              E I    QY S  +            +     ++    +   Y +  N+      +A
Sbjct: 409 MDKELIDGVTQYGSGFTTKGYYQDGYAMGVLEDYAVSADGTVSGVYSNGKNQPLYQVALA 468

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                  L++         E   S    +    +     I  S      V+L +E   LI
Sbjct: 469 LFANPQGLVKEGDTVFS--ESANSGMAQVMTPMEGGAGKIMGSNLEMANVDLSQEFVNLI 526

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  + ++I  +D++L+ L+   +
Sbjct: 527 VAQRGFQANARVITTSDQVLEELINLKR 554


>gi|218528727|ref|YP_002419543.1| flagellar hook protein FlgE [Methylobacterium chloromethanicum CM4]
 gi|218521030|gb|ACK81615.1| flagellar basal body FlaE domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 403

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/480 (11%), Positives = 126/480 (26%), Gaps = 77/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL+ V     +  N  S + +++  NI+NA    Y R     +            + N 
Sbjct: 1   MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +  L    S  G                     + +    ++   +     S     
Sbjct: 59  GAVETTLRRSVSEGG------------------PIASTNSDKDLAIQGNGFFVVSDAAGA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             + +      +    N   +        + A+      ++ +         V       
Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +   + +   +  V     +  IG                +   +++ V R +  +  
Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T  +  +  F+D    S++ G+          +    S +    N            
Sbjct: 209 MTKTAANTWSVEFLDPAPPSTSLGTTSVTFDGNGKITGSASTLVKVPN------------ 256

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                            I   +    Q   N + L      S  
Sbjct: 257 ------------------------------GGSIPVDLRGLTQLSGNHN-LSGTADGSSP 285

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +         +   Y D   K     P+A + +   L   A N         S    
Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    Q     +         V++  EL+ +I+ +  Y  ++K+ M  +++L+TL+   +
Sbjct: 344 IGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403


>gi|326386936|ref|ZP_08208550.1| Flagellar hook-associated protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208616|gb|EGD59419.1| Flagellar hook-associated protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 454

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/490 (12%), Positives = 132/490 (26%), Gaps = 50/490 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
              + +   +    A        +NI NA    YVRR                       
Sbjct: 2   TSNLLSIGASGARAAQIALDVTGQNIANASTDGYVRRAANNVELVSPSGWSAPNDISLAG 61

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           VTV              +   +S   +     +     E        N+     I   ++
Sbjct: 62  VTVSGITRNADIYTQAEVRRTASDTARGNATVTGLTNVETAV----ENSGVFTTIGNFQN 117

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L S  +  ++  L   V+     +   F  +A  +   + D   EI   +S +    S+
Sbjct: 118 ALTSLKQTPNDTSLRAAVMQAGSAMTSAFQIAATSLSSTQQDLQGEIGDGVSQVNTLASQ 177

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L  +N  +    ++       L   D           +  I +  N      SDG+    
Sbjct: 178 LATINLKLSTTASAASADAGSLTTSDRASLMDKRDQLLGQISQYANVATTLNSDGSANVN 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                       + T T  S       V ++         G   A  Q   + +      
Sbjct: 238 LGGVSGPPLVTGATTNTLSSTTASDGTVSLAMGTAPVTLSGGSIAGQQASLTKLNQISTD 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD +A  +  + + +     +     G  +                              
Sbjct: 298 LDSLAATIANTVNTQQANGADLSGTTGAALFS---------------------------- 329

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                G+ +        + +           + N       ++   +         N + 
Sbjct: 330 -----GTTAATLSMATTDGSKIAAAAAGSVANSNDATNLTALSSALSTANPAGTMNNILY 384

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +  +   +       + + +  + S S++ GV+L  E   L++ +Q++  S K++    
Sbjct: 385 DISGSVKTATTTRDTLKTLSDAAAASLSSSAGVDLNTEAVNLVRFQQAFQASGKVMQTAS 444

Query: 470 KMLQTLLEGV 479
            +  T+L   
Sbjct: 445 DIFTTMLNLK 454


>gi|308186393|ref|YP_003930524.1| Flagellar hook protein FlgE [Pantoea vagans C9-1]
 gi|308056903|gb|ADO09075.1| Flagellar hook protein FlgE [Pantoea vagans C9-1]
          Length = 418

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/476 (9%), Positives = 113/476 (23%), Gaps = 63/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +    AS     I  NI N+    +               V       +  +N 
Sbjct: 2   SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +L         N     
Sbjct: 62  NDGATTTTSRGLDVALSGNGFFRMTD------SSGGVFYSRNGQLTLDANRNLVNTQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +       +   +Q                                              
Sbjct: 116 VTGYPASGSPATIQ---------------------------------------------- 129

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +          +  + +   G+   + + +     T+  T   ++  +       +S
Sbjct: 130 AGANPVALKIPTTQMSARATTTAGLVANLNSTDTTPTVTTFSTANADSYNKKTTATVFDS 189

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  +  F+     +S     +      +    R                 +    +
Sbjct: 190 QGNDHALDMYFVKDTTSNSWTVHTIDGNTGTSAGDFR------MAFDTSGKLTSVSKLDA 243

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++  ++   GL +  G  +            +    Q     +F            
Sbjct: 244 TGAVVSTTTDGTVGLTLNVGGANGAVANQPINLSMLGSLQQNTGATTFGSPTQDGYAPGD 303

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      ++  +    L     N   W   + S    + 
Sbjct: 304 LTSYAINDDGTITGSYSNQKTQLLGQIVLSSFSNPEGLESKGDNV--WQASSASGQAAIG 361

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + +   F  ++     +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 362 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 417


>gi|261313951|ref|ZP_05953148.1| flagellar hook-associated protein FlgK [Brucella pinnipedialis
           M163/99/10]
 gi|261302977|gb|EEY06474.1| flagellar hook-associated protein FlgK [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 92/201 (45%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    A++     S+Q + + RNI  A + +Y RR       P     V       
Sbjct: 1   MSLSSALLTAKSSLAATSKQTSVVSRNISGAKDADYSRRTASLVSGPYGSLYVGISRSAD 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     +SA      L         + + D+Y+ SP+  I  LRD+L++Y+ + S 
Sbjct: 61  EAMFNRYIQSNSAASASSTLADGLDRLSALYSADNYSGSPSGLIGDLRDALQTYAASPSN 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             LG +V+  A+ +    N   R+VQ +R DAD+EI   ++N+   L++    N  +   
Sbjct: 121 SALGDSVVSVAQSLANALNDGTRQVQSLRNDADREIADSVANINDLLAKFEKANQDVVGG 180

Query: 181 TASKHDAHDFLDQRDVLLQKI 201
           T    D  D+LDQRD LL+++
Sbjct: 181 TRMGRDVSDYLDQRDALLKQL 201


>gi|253688972|ref|YP_003018162.1| hypothetical protein PC1_2595 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755550|gb|ACT13626.1| protein of unknown function DUF1078 domain protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 405

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/473 (9%), Positives = 97/473 (20%), Gaps = 70/473 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N AS     I  NI N+    +               V             
Sbjct: 2   GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        +     ++ +        ++S    I+                   +
Sbjct: 50  -------------MGVKVASVLQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSVYYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                                  R   + +              +          T    
Sbjct: 97  NGQFMLNG---------------RNIVNAQGMQLTGYPVAGTPPVVQTGADPVPLTIPDG 141

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D          +   +     +                                    T 
Sbjct: 142 DMLANRTTTASIKANLKSSDSVP-----------------------ANSWATTPGGEGTY 178

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            S++     DG     N      K                         +       E +
Sbjct: 179 NSKTALTTYDGQGNVHNYTLYFVKTANNTWQTYAKDDAVT-----PATYQNAGTLNFEAN 233

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               ++           +   +       +  +  + Q  +  S+     +         
Sbjct: 234 GALSSTGATAHTPFTINMTGTNGAAGGTFTLDLTGSVQQNTEYSYKSPTQNGFGPGSLTG 293

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++  Y +   +      +AG      L     N   W E   S    + +  
Sbjct: 294 YAINDDGTIVGSYSNGQKQALGQILLAGFANPEGLSPEGDN--AWSETASSGQAVVGLAG 351

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +    +    V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 352 SGNLGKLVGKSTEMSNVDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 404


>gi|170748125|ref|YP_001754385.1| flagellar hook protein FlgE [Methylobacterium radiotolerans JCM
           2831]
 gi|170654647|gb|ACB23702.1| flagellar basal body FlaE domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 407

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/480 (10%), Positives = 114/480 (23%), Gaps = 73/480 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L  V +   +  N  S +  ++  NI+N +   Y R  T  +    + +  +  + + 
Sbjct: 1   MGLYGVLHAGVSGMNAQSNRLGTVADNIQNQNTTGYKRASTEFSSLLIDPSPGSYDAGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +   +   +                  E      +     T   +      +   ++   
Sbjct: 61  DTVVRHRISE-----------------EGTGTATNSPTDLTIKGNGFFVVKDGSGRSYLT 103

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                 V     ++V       +       +    +      +   +++L +        
Sbjct: 104 RAGNFVVDGQTGDLVNAAGMRLQGYSLANGEPSVSLNSFDGMMNVNVAKLAMKTSPSTAG 163

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T   +   D     +     +   I              Y + G      +         
Sbjct: 164 TLEGNLFSDTPIATNPPGYSLKSSITT------------YDNLGHPFKADLYFAKTANNT 211

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              T    S P    G  +              A     +  VP  Q    ++       
Sbjct: 212 WQVTAYDASLPGNYPGTPLGGPTTLTFNAFGQIAGAPKLNFTVPNGQPFTLDL------- 264

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                                +                 + +  
Sbjct: 265 -----------------------------------SPLSQVADVAQVSDIKARSVNGNAA 289

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++     +   Y D   +     PVA + +   L   A N         S    
Sbjct: 290 SAVEGADIDTDGTVYAIYRDGSRRAAFRIPVASVGSPDNLTPRAGNVFDV--NPESGPAQ 347

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   +     HI         V+L  EL+ +I+ + +Y  ++K+     +ML+ L+   +
Sbjct: 348 IGFANVGGRGHIQSKMLENSTVDLGNELATMIEAQTTYGANSKVFQTGSEMLELLVNLKR 407


>gi|238762359|ref|ZP_04623330.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii
           ATCC 33638]
 gi|238699344|gb|EEP92090.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii
           ATCC 33638]
          Length = 397

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/472 (12%), Positives = 117/472 (24%), Gaps = 78/472 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A    +  ++Q  +I  NI N+  K +    T  +                     
Sbjct: 2   SFSIANTGLSAVTEQLNTISNNIANSATKGFKSGRTEFSSMY------------------ 43

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              A S  +G      S    KE                +           +  ++   +
Sbjct: 44  ---AQSQPLGVGVSGTSQSIRKEGSIDRTGNAMDLAISGNGFFV----VKNSNGDEAYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +   +      N S  ++Q   ADA   I+                            
Sbjct: 97  AGMFTTDNNGLLVNASGMKLQGYSADATGNIQT--------------------------G 130

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              D       L  K S  +     +  ++          +  ++          +S   
Sbjct: 131 TIGDLKISTSGLPAKASSKLDFMANLPASDTPPTNRIFSPSNEDSYNYMSTSTAYDSLGR 190

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                  F+     S              +    DSV+    + L      ++ S + ++
Sbjct: 191 EHLLTQYFVKSSAPSE-----------WKVHTALDSVLKTGSHDLKFDTSGVLTSGNTQN 239

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                       I        Q++S      +  +       N 
Sbjct: 240 ISGT--------------YSPAGADNFSIDINYTGTTQFQSAFLPTVNKSNGYTAGTKNG 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           + +     +   + +          +A       L   A+N   W   ++S +  L    
Sbjct: 286 ERVESDGSVFATFSNGERMLQGKLALANFANANGL--AAQNGTTWSATSKSGAALLGAPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             +   I         V+L  EL  L+  +++Y  + K+I   D M+  L +
Sbjct: 344 TGLLGGIEVGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMMNALFQ 395


>gi|310767290|gb|ADP12240.1| flagellar hook protein FlgE [Erwinia sp. Ejp617]
          Length = 402

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +          N+    
Sbjct: 62  NDGTTTNTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDQNRNIVNMQGLH 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           VQ                                     N       A
Sbjct: 116 LTGYPATGTPPTVQT----------------------------------GANPVALSVPA 141

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A              ++ +     +  N+          T F+++           
Sbjct: 142 TAMAAKATTTAAMTANLNSTDAVKNYANLNINDSTTYNAKSSMTAFDSLGNAHTVNLYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +      +D    ++   + +       L+   +  V     QL            
Sbjct: 202 KTADNNWTVHPVDASTGTAGADTNLVFNSNGQLVTPNNGQVSFTMGQL------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                 +  N              Q     +F        K   
Sbjct: 250 ----------------------NGSNGPTTLNVNLTGSQQQNNGKSTFGNPTQDGYKPGE 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     L+  Y +   +      ++       L     N   W     S      
Sbjct: 288 LTSYQINDDGTLVGTYSNEQTQVLGQIVLSNFANPEGLKSEGDNV--WSASAASGQALSG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        ++     +  V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 IAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|291538503|emb|CBL11614.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4]
          Length = 547

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/549 (8%), Positives = 112/549 (20%), Gaps = 77/549 (14%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------ISPENV 50
              A +       +   I  NI N +   +     +                       V
Sbjct: 1   MYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATGTGGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHYISKL 107
                          +    S A             +         ++ + +        
Sbjct: 61  NAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTRAGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-- 165
                      +                     +   ++ ++           +      
Sbjct: 121 YVDGAGNLCM-TSTGYTVMGWQVDPTTGNIKKDTVSALRVMQTSNLTSAPEATTQANVSG 179

Query: 166 --------------------------------------------FLSELTVVNDAIKFKT 181
                                                        +    ++N       
Sbjct: 180 IIDKNDKDVLSDNGLVKTLTFFDNLGYSYTARFAMKSTGTDGKYTVELEKILNSDGTTFY 239

Query: 182 ASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                     D       D  L   +++          N   V +++  T  E       
Sbjct: 240 DPATSQVKLEDVFGSKTADATLGTYNQVQSGYYYDATQNKFYVGSNNNGTELEWDAITST 299

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           F++ N+ T T     ++     + S  G    K  I          V  +          
Sbjct: 300 FKEKNAPTNTHSLKQVYGISDAMVSKIGGGQAKAAIANGTLTISGDVTDYAIDFSTKDGT 359

Query: 297 LI-----GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   S ++ + +  N   +           +D    +  +          +     
Sbjct: 360 FTGVGARTSNNKTNSVTLNMSKLGNNPTQFDDITIDFSGLKDANNGGKSTAVMSTGSIDD 419

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G   K       ++     +   Y +   +      VA       L +   N     
Sbjct: 420 GVTGKGKKLGAMIGISIDNNGLIKGTYDNGNTEILGQIAVAQFANASGLEKVGENCYRTT 479

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +          S    + ++        V+L  E + +I  ++ +  ++++I  +D +
Sbjct: 480 LNSGEFDGIGVEISADG-SSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITTSDTL 538

Query: 472 LQTLLEGVK 480
           L+ L+   +
Sbjct: 539 LEELVNLKR 547


>gi|323527706|ref|YP_004229859.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1001]
 gi|323384708|gb|ADX56799.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1001]
          Length = 657

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 131/449 (29%), Gaps = 23/449 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N   +  N A     +  +NI NA    Y     +   +             V+ 
Sbjct: 1   MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVFAETGGQYTGSGYLPQGVST 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT   +        L+   S+        S  +    +             I+     ++
Sbjct: 61  VTVTRQYSQYLTTQLNNAQSSSSSLSTYNSLISQLNNLVGSPTA--GIASAITSYFTGMQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N S     +T +  A+ +    N + ++   +R   + ++   +S +  +  ++  
Sbjct: 119 NVANNASSLATRQTAMSGAQTLANQINAAGQQYDALRESVNTQLSNTVSQINSYTQQIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  LDQRD+ +  +S++IG+  +  +N    V+ S+G  L     
Sbjct: 179 LNGQINAASTQGQPPNQLLDQRDLAVSNLSQLIGVQVV-NSNGAYSVFMSNGQPLVSAGN 237

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   ++   +                       S +  G +  L+  R   +   +
Sbjct: 238 SFNLGTAPSTGDSSELSVQYLGQAGANPAAPPQDLPASKIEGGTLGGLVAFRSQTLDPAE 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-----TICVNP 342
            QL  +A       + ++ +      V G  +            Q         +     
Sbjct: 298 AQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVGSPTVYANTQNTGNASLSVSFANAA 357

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q  +    L   GS       +   + G    ++   +  N +      AG +  V    
Sbjct: 358 QPTTGDYTLAFNGSSYTLTDNSTGTVVGSASNLSQPINGLNFSMTGTMNAGDSFTVEPTR 417

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            A NS      + S               
Sbjct: 418 GALNSFATATTDASAIAAASPVLGAAATT 446



 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/442 (8%), Positives = 105/442 (23%), Gaps = 3/442 (0%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             + +    +V +   +          L    S      L   +        A    +  
Sbjct: 214 QVVNSNGAYSVFMSNGQPLVSAGNSFNLGTAPSTGDSSELSVQYLGQAGANPAAPPQDLP 273

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            +         L ++     +    +          Q    +A  +            + 
Sbjct: 274 ASKIEGGTLGGLVAFRSQTLDPAEAQLGAIAVSFASQVNAQNALGITLAGVQGGALFSVG 333

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +          + ++ F  A++    D+    +     +++    + +   +N    
Sbjct: 334 SPTVYANTQNTGNASLSVSFANAAQPTTGDYTLAFNGSSYTLTDNSTGTVVGSASNLSQP 393

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ---GSAVPKGKIKALL 276
                 ++  T+    +F    +    +       D   +++     G+A         +
Sbjct: 394 INGLNFSMTGTMNAGDSFTVEPTRGALNSFATATTDASAIAAASPVLGAAATTNTGTGAI 453

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                                    +     +  +                       + 
Sbjct: 454 SPGTVTAGYTMPSSTTTLTYNGTGLTGFPVGSTVTVAGSPATTYSITSATTVVPYSSSTG 513

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                    +                 +   +       N   ++   + +    +    
Sbjct: 514 ASLTINNTSAGQMNNVSVTISGVPAAGDKFTIGPNTGANNDGRNALALSNLSTAKSMNGG 573

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
            VTL     N +  +    +           +   I+ +  +  GVN+ EE + L++ +Q
Sbjct: 574 TVTLTGAYANYVNEIGNQTNQIQTASTAQASLVTQITTAQQSVSGVNINEEAANLLQYQQ 633

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
            Y  ++K+I     + QTLL  
Sbjct: 634 LYQANSKVIQTAQTLFQTLLGI 655


>gi|146305250|ref|YP_001185715.1| flagellar basal body FlaE domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573451|gb|ABP82983.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina
           ymp]
          Length = 395

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/474 (9%), Positives = 122/474 (25%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A    +  ++Q  +I  NI NA    +    T       ++   +Q    + +   
Sbjct: 2   SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEF----GSIYADSQAMGVEVLATT 57

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              +   ++                          +  ++           +  +    +
Sbjct: 58  QSISQGGSL---------------------VTTGRSLDLAISGGGFFVTRGSNGDVSYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  A++     N +  ++Q    DA              +  +  +        A   
Sbjct: 97  AGVFGADKDNYIVNAAGLKLQGYPVDAAG---------NLLVGAMGDLQLQNANLPARAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           D+  F+   D      ++ +  +      +     ++  T +F++  ++    +    T 
Sbjct: 148 DSLAFVMNLDS-----NQSVPTAAPFDPADVNTYNSTYTTKVFDSQGKEHTLTQYFVKTG 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +     +                                                 +  
Sbjct: 203 DNAWEAHYYADGAAVGGP---------------------------------------QAL 223

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               N      +        L       I+     + QY S+     +  S         
Sbjct: 224 TFGTNGSLTAPVGPVAVGFPLPGVDPMNIAIDYSNSSQYGSDFVVTSNRASGYAAGEQTG 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +  +Y +          +A       L     +   W+E   S +  + +  
Sbjct: 284 LSVEKDGMVYANYSNGQRMLQGQVALATFANAGGLKNV--SGTAWVESAESGAALIGVPG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              F  +         V+L ++L  L++ +++Y  + K++    ++ Q L   +
Sbjct: 342 VGPFGELVAGSLENSNVDLTQQLVGLMEGQRNYQANTKVLTTNKELTQVLFGAI 395


>gi|188579925|ref|YP_001923370.1| flagellar hook protein FlgE [Methylobacterium populi BJ001]
 gi|179343423|gb|ACB78835.1| flagellar basal body FlaE domain protein [Methylobacterium populi
           BJ001]
          Length = 402

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/480 (11%), Positives = 124/480 (25%), Gaps = 78/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL+ V     +  N  S + +++  NI+NA    Y R     +            + N 
Sbjct: 1   MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +  L    S  G                     + +    ++   +     S     
Sbjct: 59  GAVETTLRRSVSEGG------------------PIASTNSDKDLAIQGNGFFVVSDAAGA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             + +      +    N   +        + A+      ++ +         V       
Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + S   + +   +  V     S I                  +   +++ V + +  +  
Sbjct: 161 STSATISGNLSFETPVYDPATSTI-------------GYSKKNSLKVYDNVGQPVTLDVQ 207

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T  +  +  F +    ++  G+A         +    S +    N            
Sbjct: 208 MTKTAANTWSVKFFNPADATTPVGTATVAFDGNGKVTSGGSTLVQVPN------------ 255

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                          + I   +    Q   + + L      S  
Sbjct: 256 ------------------------------GREIKVDLGGLTQLSGDHA-LSGTADGSSP 284

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +         +   Y D   K     P+A + +   L   A N         S    
Sbjct: 285 TSVSGTAFGEDGTVYAVYSDGTRKAAFKVPLADVASPDNLSPRAGNVFTT--SAESGDIQ 342

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +          +         V++  EL+ +I+ +  Y  ++K+ M  +++L+TL+   +
Sbjct: 343 IGFAGAGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 402


>gi|259908812|ref|YP_002649168.1| flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96]
 gi|224964434|emb|CAX55943.1| Flagellar biosynthesis, hook protein [Erwinia pyrifoliae Ep1/96]
 gi|283478794|emb|CAY74710.1| flgE [Erwinia pyrifoliae DSM 12163]
          Length = 402

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +          N+    
Sbjct: 62  NDGTTTNTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDQNRNIVNMQGLH 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           VQ                                     N       A
Sbjct: 116 LTGYPATGTPPTVQT----------------------------------GANPVALSVPA 141

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A              ++ +     +  N+          T F+++           
Sbjct: 142 TAMAAKATTTAAMTANLNSTDAVKNYANLNINDSTTYNAKSSMTAFDSLGNAHTVNLYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +      +D    ++   + +       L+   +  V     QL            
Sbjct: 202 KTADNNWTVHPVDASTGTAGADTNLVFNANGQLVTPNNGQVSFTMGQL------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                 +  N              Q     +F        K   
Sbjct: 250 ----------------------NGSNGPTTLNVNLTGSQQQNNGKSTFGNPTQDGYKPGE 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     L+  Y +   +      ++       L     N   W     S      
Sbjct: 288 LTSYQINDDGTLVGTYSNEQTQVLGQIVLSNFANPEGLKSEGDNV--WSASAASGQALSG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        ++     +  V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 IAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|333004885|gb|EGK24405.1| flagellar hook protein flgE [Shigella flexneri VA-6]
          Length = 399

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/477 (10%), Positives = 110/477 (23%), Gaps = 84/477 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            T  +       D    +S    +   +        + +++     N  +     L    
Sbjct: 202 KTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGTCAMANNIATGAINGAEPATFSLSFLN 261

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           S +     N                                      + +    +  K  
Sbjct: 262 SMQQNTGAN--------------------------------------NIVATTQNGYKPG 283

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +     ++ +Y +   +      +A    N  L     N   W     S    L
Sbjct: 284 DLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALL 341

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  F  ++        V+L +EL  +I  +++Y  + + I   D++L T +  
Sbjct: 342 GTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTRVNL 398


>gi|119389100|pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
 gi|119389101|pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
          Length = 463

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 111/348 (31%), Gaps = 4/348 (1%)

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   L    +            +  + + AD   +   +  +     SL++   N 
Sbjct: 3   YDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSL--SGSLQSFFTSLQTLVSNA 60

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
            +    + +I  AE +V  F T+ + ++      +  I   ++ +  +  ++  +ND I 
Sbjct: 61  EDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120

Query: 179 FKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
             T   +    +D LDQRD L+ ++++I+G+   V++     +  ++G TL +       
Sbjct: 121 RMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQL 180

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               +S   T  +     +           +  G +  LL  R   +   +N L ++A  
Sbjct: 181 AAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALA 240

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              +F+ +     +++   G         +         +T+ +  +   +         
Sbjct: 241 FADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQATDYK 300

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +                      D+  K  I      + T     +  
Sbjct: 301 IVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSF 348



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/318 (10%), Positives = 74/318 (23%), Gaps = 11/318 (3%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI- 201
            ++  +           ++    +          +    +S       +   D     I 
Sbjct: 146 NKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIE 205

Query: 202 --------SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                     + G+ T    + D    T     L      +    K          +   
Sbjct: 206 IPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFS 265

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           I   VV SN  +A     + A  ++ DS      +                D     +  
Sbjct: 266 IGSPVVYSNSNNADKTVSLTA--KVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATK 323

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                +      +        +++  + P   +         + ++  + +   L    D
Sbjct: 324 DADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVD 383

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
             +    +            +  N T  +     +  +    S           V   + 
Sbjct: 384 TGDSDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLY 443

Query: 434 ESYSNTVGVNLQEELSFL 451
           +   +  GVNL EE   L
Sbjct: 444 KQQQSVSGVNLDEEYGNL 461


>gi|110805093|ref|YP_688613.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401]
 gi|110614641|gb|ABF03308.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401]
          Length = 402

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 106/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N     
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +                +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L T +  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 401


>gi|315301954|ref|ZP_07872952.1| flagellar hook-associated protein FlgK [Listeria ivanovii FSL
           F6-596]
 gi|313629677|gb|EFR97812.1| flagellar hook-associated protein FlgK [Listeria ivanovii FSL
           F6-596]
          Length = 444

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 65/443 (14%), Positives = 136/443 (30%), Gaps = 29/443 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SP 47
           M L   FN + +  + A        +NI N +   Y+R+                   + 
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQQAIYSDGGLLGGNKQTG 59

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V   +           +   +                 +      N  P+  +   
Sbjct: 60  YGVKVTDIKRLTNVALTTQYNNQIAKQSASLYESGALNQALNLFGTPGKNT-PSDNLDNF 118

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             +  + +KN  +      ++ +        N     ++++      + E  + +L   +
Sbjct: 119 FTAWGALAKNPDQATNTTALLSSMTIFTDQLNQLHSGLKELETTITADTEAAVKDLNTLI 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +L  +N AI    A  +  +D L+QRD +L  +S   GIS     NN  V   + G  L
Sbjct: 179 KKLGSINKAI--GNAGSNPPNDLLNQRDQILTTMSGYAGISVSAHPNNPDVYDVTIGGRL 236

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                         + +                S Q   +P+G I A +++  + +  +Q
Sbjct: 237 VVQGDETTEITSTRTAS----------GFEFSVSGQTLHMPEGSISASVRVNQNEINSYQ 286

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            +++  +  L  +  +      N        I D ++   N   + +S    +  Q    
Sbjct: 287 AKIETFSNGLAKALDDIQVKNVNKTMDDLQKINDALQANPN-DEKLLSNREELLRQLEKF 345

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNVTLLEYARN 406
           P   R G ++      +  +  G    +N   D     F+ +     IN  +T     + 
Sbjct: 346 PGVTRSGDTIDIGGTSHSIDSLGTSTYVNDVSDFSIPIFVQNAGKWMINPTITNNAENKQ 405

Query: 407 SIGWLEKNRSDSHDLHMKSQVVF 429
            +G +  + +            F
Sbjct: 406 FLGVIAADIASLKTDKNIEGTTF 428


>gi|27378814|ref|NP_770343.1| flagellar hook-associated protein [Bradyrhizobium japonicum USDA
           110]
 gi|27351963|dbj|BAC48968.1| flaN [Bradyrhizobium japonicum USDA 110]
          Length = 582

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 90/423 (21%), Positives = 163/423 (38%), Gaps = 20/423 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQ 55
           MSL      A +  +    Q +    NI NAD   Y  +    T S        VTV   
Sbjct: 1   MSLDITRLIAFSGLSATQVQISVTSSNISNADTTGYTTKTANQTSSVTNGVGTGVTVTGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109
            S    +  K L   +S +G      ++    + +              S  + ++ L  
Sbjct: 61  TSTVDKLLLKSLIGATSELGAADTSNTYLTSLQKLYGSTSTSDSSSTGTSLANTLADLES 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L S +   S   L    +    +VV     ++  +QK+R++ADK+I   + ++ + L +
Sbjct: 121 ALSSLASTPSSASLQSNAVSALNDVVSQLRETSSGIQKLRSNADKDIASSVDDVNKDLQQ 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  VN  IK   AS     D  DQR+  LQ ++  + +S    +N D+ VYT+ G  L +
Sbjct: 181 IANVNAEIKQVAASGQSTADLEDQRNTALQDVASKMNVSYFTASNGDLQVYTTSGQALVD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +    I++    + + ++    I ++GV +     S +  G I AL+ +RD  +P  Q+Q
Sbjct: 241 SSAHTISYTTAANVSSSTSFGAISVNGVDI----TSQITSGDIGALVTLRDKTLPAAQSQ 296

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD++A+    + +     A +      L     +   D      +S T  V+        
Sbjct: 297 LDQLAQQFTSALNSVSNSASSVPPPTSLTGTTAVASTDA-----LSATGTVHIAATDQSG 351

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            L     +       V +L    + I+    S + N      A  + N   +    +S+G
Sbjct: 352 NLVSYADLDLSSYATVGDLVTAINGISGLSASVDSNGHLTISATGSGNGVAINEMTSSVG 411

Query: 410 WLE 412
              
Sbjct: 412 SSG 414



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/451 (10%), Positives = 123/451 (27%), Gaps = 9/451 (1%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  +  +          +          ++       +       + ++  +    
Sbjct: 130 SSASLQSNAVSALNDVVSQLRETSSGIQKLRSNADKDIASSVDDVNKDLQQIANVNAEIK 189

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                     D  +  +  L +      V             +      + + A      
Sbjct: 190 QVAASGQSTADLEDQRNTALQDVASKMNVSYFTASNGDLQVYTTSGQALVDSSAHTISYT 249

Query: 159 EISNLRRFLSELT-VVNDAIKFKTASKHDAHDFLDQRD-------VLLQKISEIIGISTI 210
             +N+    S     VN        +  D    +  RD         L ++++    +  
Sbjct: 250 TAANVSSSTSFGAISVNGVDITSQITSGDIGALVTLRDKTLPAAQSQLDQLAQQFTSALN 309

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             +N+   V      T    V          +  + +      +           A    
Sbjct: 310 SVSNSASSVPPPTSLTGTTAVASTDALSATGTVHIAATDQSGNLVSYADLDLSSYATVGD 369

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            + A+  I      +  N    ++    G+    + +  +  +           +     
Sbjct: 370 LVTAINGISGLSASVDSNGHLTISATGSGNGVAINEMTSSVGSSGEGLSDYFGLNDIVTG 429

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                  +  +    S+   L    S S   + +    +G   ++N+  D+   +  F  
Sbjct: 430 TSAADIAVKSSFLSGSSELPLATLDSSSTLTVGSRVLSSGSATVVNNLYDTLTGSRSFAS 489

Query: 391 VAGIN-TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
             G+  +  +  +YA   +  +    S +   +   +   +  ++S S+  GVNL EE +
Sbjct: 490 AGGLAESTGSFADYAATIVSDVASKASQASSAYTAKETAQSTYADSLSSQSGVNLDEESA 549

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            L  ++  Y+ ++ LI   + M   LL  V+
Sbjct: 550 RLSTLQNKYSAASALIQAINTMYSALLNAVQ 580


>gi|309779447|ref|ZP_07674208.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA]
 gi|308921688|gb|EFP67324.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA]
          Length = 404

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/473 (11%), Positives = 113/473 (23%), Gaps = 71/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQIGQGVSVTKVSQ--------------------AFTQGNVTITGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           +      +      +  R  Q              ++   ++   T  N       ++  
Sbjct: 87  SGFYRMVDQGSGQVSYTRNGQFQ------------TDKNGYVISATGQNLTGYGVDSTGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L +  + +  ++ +   +T    N D        T    T     N         
Sbjct: 135 VNTAVLTKLQIPVNDLAPLATTNTAFAINLDAAATVPTTTPFSATNSATFNHSVSEQ--- 191

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                 ++             V  G    +    D   P   N +  +     G  +   
Sbjct: 192 ------VYDGTGTAHMLTNYYVRTGTGWNVYSQVDGNNPTGGNPVTSLTFNTSGQLTSSP 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +   P                   +       QY    +                
Sbjct: 246 SKVAVAFGTP-------------TGMSISNIDFTGTTQYGGGYNDTTVTQDGYATGRLAS 292

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +A       L     N   W+E + S +  L    
Sbjct: 293 YSVGTDGTITGRYSNGRTSVLGQIAMANFKAPEGLQNIGGNQ--WVETSNSGAPGLGTPG 350

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D +LQTL+  
Sbjct: 351 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLVSL 403


>gi|297569153|ref|YP_003690497.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925068|gb|ADH85878.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 806

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/386 (9%), Positives = 98/386 (25%), Gaps = 6/386 (1%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                 +   ++          +    +              +F  +  +   +      
Sbjct: 427 ADGEFLSQLANQFGAVSAGIDADGRLTLRAPGGASRMAITGIDFVDAIADFTTVNPFGSG 486

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            + +  +         T                     + D +    +    I       
Sbjct: 487 AVNVSSTKKEVVAPVQTYSAPYDTTTDTDPPSLISAATRWDAVYVDGNPDPAIDFDGDPA 546

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
               + T DGT L         FE     TV    + +  +  V +    +     + + 
Sbjct: 547 ISYAIMTRDGTLLEGEYSN---FEASPDSTVQGFLDHLSNEYDVDAYIDNTGRLVIRDRV 603

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                D    +    +       I   ++ D    +   + G    +G +       +  
Sbjct: 604 ADPGGDEASQLNFRIMAYTDMEEIFGPADMDDFG-DFHVISGSPERNGSQTGTAVDNRFG 662

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                   QY ++ + +    +          ++     +  ++ +          +A  
Sbjct: 663 DTEAMFTTQYANSSTTIYQDQNGFAAGFLQSVSVDTAGIITGNFSNGQVLMQAKVALADF 722

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
                L +   N   +    +S +             I+ +      V+L  E   +I  
Sbjct: 723 ANLQGLHKVGGNI--FRATTQSGAPVTGEPGTNGLGEIAPNSLEMSNVDLGTEFVKMITT 780

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ +  ++K+I  TD+ML  L+   +
Sbjct: 781 QRGFQANSKMITTTDEMLNELINIKR 806



 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/347 (9%), Positives = 75/347 (21%), Gaps = 22/347 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL        +  +      + +  NI N +   +    +               + + 
Sbjct: 1   MSLSGSLYAGISGLSTMGNGMSVLGDNIANVNTVAFNSSRSTFQDVLSQSVSTAAGTAQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              VT  + +         + S+        + F     M+   D           + R 
Sbjct: 61  GRGVTLTTVDGLFAQGSFESTSTPTDMAIGGEGFF----MLRGGDSAEADMFTRAGEFRF 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQ------NFNTSAREVQKIRADADKEIELEISNL 163
               +  +     +    +D     ++        + S   VQ  + D    ++  +   
Sbjct: 117 DQHGFLTSPGGHFVQGWSVDKNTGQIEGTIGDIRMDRSTPPVQTEQIDLIVNLDARVDQA 176

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                  +    A     A+ +     L   D         I      + N    + TSD
Sbjct: 177 SASTLYDSWNGTADDPIAATNYQYTTSLKVYDSKGVARDVTIYFDRTAKENEWEFLVTSD 236

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                     +   +        +  NP       +   + +    G I  +        
Sbjct: 237 PAA-DRRELSEAEKQTYAPDEQYNYQNPAHRGAGALMYGKINFDNNGNITTIDTWDVPAD 295

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                         +           N    P     +     D   
Sbjct: 296 GRVDPDRTTNRSNRLDDSGNYPVFDANFTGDPQTIALNFGARSDGSS 342


>gi|296157449|ref|ZP_06840284.1| flagellar hook-associated protein FlgK [Burkholderia sp. Ch1-1]
 gi|295892221|gb|EFG72004.1| flagellar hook-associated protein FlgK [Burkholderia sp. Ch1-1]
          Length = 657

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 122/411 (29%), Gaps = 18/411 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N   +  N A     +  +NI NA    Y   + +   S             V+ 
Sbjct: 1   MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIENPVYAESGGQYTGSGYLPQGVST 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T   +        L+   S+        +  +    +             I+     L+
Sbjct: 61  TTVTRQYSQYLTTELNNAQSSGSSLSTYNTLISQLNNLIGSPTA--GIASAITSYFTGLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S N S     +T +  A+ +V   N + ++   +R   + ++   +S +  +  ++  
Sbjct: 119 NVSNNASSLATRQTAMSGAQTLVNQINAAGQQYDALRQSVNTQLTNTVSQINSYSQQIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  LDQRD+ +  +S++IG++ +  +N    V+ S+G  L  +  
Sbjct: 179 LNGQIAQASTQGQPPNQLLDQRDLAVSNLSQLIGVNVV-NSNGSYSVFMSNGQPLVSSAN 237

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   ++   +                   +   S +  G +  LL  R   +   +
Sbjct: 238 SYNLGTAPSTGDTSELSVQYLGQAGANPAAAPQNLPDSKIDGGTLGGLLAFRSQTLDPGE 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QL  +A       + ++ +        G  +            Q               
Sbjct: 298 AQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFADPT 357

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                D         + + + +    + +    S   N +     G     
Sbjct: 358 QPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAG 408



 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/360 (9%), Positives = 87/360 (24%), Gaps = 1/360 (0%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            +     +  +    V   N     +   +  A   +           +    +N +   
Sbjct: 296 GEAQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFAD 355

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T      +             +    +     N +  +   +  TT           E 
Sbjct: 356 PTQPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAGDSFTVEP 415

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                 +  +       +  ++   +A            + +V   +            G
Sbjct: 416 TRGALNSFATATTDASAIAAAAPVLAAAAASNTGTATITQGTVTAGYTMPNSTTTLSYDG 475

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGGSVS 358
           +     P                I      +    +    +     +            +
Sbjct: 476 TGLSGFPAGSTVTVAGTPPTTYTIASAATVVPYSSATGATLTINNATAGQMNNVSVTISN 535

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +   +       N   ++   + +    A     VTL     N +  +    +  
Sbjct: 536 APAAGDKFTIGPNTGATNDGRNALALSNLSTAKAMSGGTVTLTGAYANYVNNIGNQTNQI 595

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +   I+ +  +  GVN+ EE + L++ +Q Y  ++K+I     + QT+L  
Sbjct: 596 QTSSTAQSSLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTILGI 655


>gi|17548566|ref|NP_521906.1| flagellar hook protein FlgE [Ralstonia solanacearum GMI1000]
 gi|17430814|emb|CAD17496.1| probable flagellar hook protein flge [Ralstonia solanacearum
           GMI1000]
          Length = 401

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/473 (10%), Positives = 105/473 (22%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T      +      +  R  Q              ++   ++   T  N       A+  
Sbjct: 87  TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYGVDATGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  ++ +   +T    N D        T    T     N         
Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFSINLDAAGTVPTTTPFSATNSATFNHSVSEQVYD 194

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +                              + +  V                      
Sbjct: 195 GT-------------------------GTSHMLTNYYVRTAAGWDVYSQVDGANPTGGNP 229

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +    +   L  +     +        +       QY    +                
Sbjct: 230 VTSLTFNSSGVLTSSPSKVAVAFAGMSIANMDFTGTTQYGGGFNDTTVSQDGYATGRLAS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +        L     N   W+E   S +  +    
Sbjct: 290 YSVGTDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGAPQMGTPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D +LQTL+  
Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLVSM 400


>gi|163850123|ref|YP_001638166.1| flagellar hook protein FlgE [Methylobacterium extorquens PA1]
 gi|163661728|gb|ABY29095.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium extorquens PA1]
          Length = 403

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/480 (11%), Positives = 126/480 (26%), Gaps = 77/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL+ V     +  N  S + +++  NI+NA    Y R     +            + N 
Sbjct: 1   MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +  L    S                        + +    ++   +     S     
Sbjct: 59  GAVETTLRRSVSE------------------GGPIASTNSDKDLAIQGNGFFVVSDAAGA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             + +      +    N   +        + A+      ++ +         V       
Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +   + +   +  V     +  IG                +   +++ V R +  +  
Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T  +  +  F D    +++ G+          +    S +    N            
Sbjct: 209 MTKTAANTWSVEFFDPAAPTTSLGTTNVTFDGNGKVNGGGSALVNVPN------------ 256

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                          + I   +    Q   + + L    + S  
Sbjct: 257 ------------------------------GRSIPVDLGGLTQLSGDHN-LSGTANGSSP 285

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +         +   Y D   K     P+A + +   L   A N         S    
Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    Q     +         V++  EL+ +I+ +  Y  ++K+ M  +++L+TL+   +
Sbjct: 344 VGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403


>gi|158422271|ref|YP_001523563.1| flagellar hook protein FlgE [Azorhizobium caulinodans ORS 571]
 gi|158329160|dbj|BAF86645.1| flagellar basal body FlaE protein [Azorhizobium caulinodans ORS
           571]
          Length = 430

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/482 (10%), Positives = 108/482 (22%), Gaps = 54/482 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL      + +  N  S +  +I  NI N++   Y +  T  +    + +     S + 
Sbjct: 1   MSLYGTLRTSVSGMNAQSNKLGTISDNIANSNTTGYKKATTDFSSLIVDSSTSEYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNL 118
           N       +                  +          S   T   S   D+      N 
Sbjct: 61  NTKISYDISKQGTTTSSTSATDMMVNGDGFFVVQDGGGSTYLTRAGSFTVDATTGNLVNT 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +   L    I     V    N++A             I           S     N    
Sbjct: 121 AGYTLMGYDISKGNNVTPVVNSTAG-------MVPVNIGSIALAAVPTTSGTMTANLQST 173

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
               S                        +   +++  +     +   L     +     
Sbjct: 174 SAVVSGATPGG-------------NTAAATYTYKSSVSVYDNLGNQVVLDVYFTKTAAAN 220

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +   T        +    ++   +  P                            L 
Sbjct: 221 PAATPPTTGGWEMAIYNQADATTGGTTPFPYSS-----------------------SALA 257

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                 D          G                     +        N   ++   + S
Sbjct: 258 TQTLTFDSTGQLLTPATGKVSLTVPNGQTMNFDISTMTQLS-------NDYSIKAPTNGS 310

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +   +     +     +    N    PVA + +   L   + N   +     S +
Sbjct: 311 PATSASDIKVNSQGIVYAVDGNGNTTNLYRIPVATVKSPDNLTPVSGN--AYQVTQESGA 368

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + +        I  +      V++  EL+ +I  ++ Y  ++K+      +L  L+  
Sbjct: 369 MQIGLSGSAGVGTIKSNTLENSNVDVASELTDMIVAQRDYTANSKVFQTGTDLLDVLMNL 428

Query: 479 VK 480
            +
Sbjct: 429 KR 430


>gi|292487939|ref|YP_003530814.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430]
 gi|292899158|ref|YP_003538527.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946]
 gi|291199006|emb|CBJ46117.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946]
 gi|291553361|emb|CBA20406.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430]
 gi|312172060|emb|CBX80317.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158]
          Length = 402

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/476 (10%), Positives = 103/476 (21%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVVQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +          N+    
Sbjct: 62  NDGTTTNTSRGLDVAISSAGFFRMADA------NGGVFYSRNGQFTLDQNRNIVNMQGLH 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           VQ                                     N       A
Sbjct: 116 LTGYPATGTPPAVQT----------------------------------GANPVALSVPA 141

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A              ++ +     +  N+          T F+++           
Sbjct: 142 TAMTAKATTTAAITANLNSTDAVKNYANLNINDTTTYNAKSSMTTFDSLGNAHTVNLYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +      +D    ++   + +       L+   +  V     QL            
Sbjct: 202 KTADNNWTVHPVDASTGTAGADTNLVFNANGQLVTPNNGQVSFTMGQL------------ 249

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                 +  N              Q     +F        K   
Sbjct: 250 ----------------------NGSNGPTTLNVNLTGSQQQNNGKSTFGNPTQDGYKPGE 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     L+  Y +   +      ++       L     N   W     S      
Sbjct: 288 LTSYQINDDGTLVGTYSNEQTQLLGQIVLSNFANPEGLKSEGDNV--WSSTAASGQALSG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        ++     +  V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 IAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>gi|116694219|ref|YP_728430.1| flagellar hook protein FlgE [Ralstonia eutropha H16]
 gi|113528718|emb|CAJ95065.1| flagellar hook protein [Ralstonia eutropha H16]
          Length = 408

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/473 (9%), Positives = 99/473 (20%), Gaps = 66/473 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N A+     I  NI NA+   Y +             +      N     +
Sbjct: 2   GFGQGVSGLNAAASNLDVIGNNIANANTVGYKQSAAQFADVYAGTKIGLGVRVNS--VVQ 59

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
             +  +     + L  +                       + +   +    N+    +  
Sbjct: 60  SFNQGNIEASGRSLDVAITNGNGFFRLTSPEGAVYYSRNGQFQRQEDGRITNMQGLQVTG 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                A                                   +     +         +K 
Sbjct: 120 YPAGVAGGAGVQPQ-------------------------PLVISNAQMEPRATSNITAKF 154

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                           +     S +   +  + VY S G           +         
Sbjct: 155 QLDSRATVPTQAFASAAGSPPTSNMFNYSTAINVYDSLGNKQQLMAYFAKSAGAPTVAGG 214

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T     +              +      AL       + + Q                  
Sbjct: 215 TDWRMYVTDVNGNAVGGAPVTLAFDNAGALQSPAAGAITLSQ------------------ 256

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                                +      +   +    Q+ ++    +   +         
Sbjct: 257 ------------------PAANGAQAMAMKLDLTGTTQFGADNDVKQLSQNGYTSGSLLG 298

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++ G   +  +Y +   K      +A       L     N   W     S    + +  
Sbjct: 299 FSVNGDGTITGNYSNEQTKPLGQIVMAAFGNVEGLKPEGDNV--WSATGASGQALVGVAG 356

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +  +      V+L  +L  LI  +++Y  + + I   D ++QTL+  
Sbjct: 357 -GSMGTLRSNAVEASNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVNL 408


>gi|254559268|ref|YP_003066363.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4]
 gi|254266546|emb|CAX22310.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4]
          Length = 403

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/480 (11%), Positives = 127/480 (26%), Gaps = 77/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL+ V     +  N  S + +++  NI+NA    Y R     +            + N 
Sbjct: 1   MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLL--DSGDVGNYNS 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +  L    S                        + +    ++   +     S     
Sbjct: 59  GAVETTLRRSVSE------------------GGPIASTNSDKDLAIQGNGFFVVSDAAGA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             + +      +    N   +        + A+      ++ +         V       
Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +   + +   +  V     +  IG                +   +++ V R +  +  
Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T  +  +  F D    +++ G+          +    S +    N            
Sbjct: 209 MTKTAANTWSVEFFDPAAPTTSLGTTNVTFDGNGKVNNGGSALVDVPN------------ 256

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                          + I+  +    Q   + + L    + S  
Sbjct: 257 ------------------------------GRRITVDLGGLTQLSGDHN-LSGTANGSSP 285

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +         +   Y D   K     P+A + +   L   A N         S    
Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    Q     +         V++  EL+ +I+ +  Y  ++K+ M  +++L+TL+   +
Sbjct: 344 VGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403


>gi|21672604|ref|NP_660671.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008456|sp|Q8K9K6|FLGE_BUCAP RecName: Full=Flagellar hook protein flgE
 gi|21623235|gb|AAM67882.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 409

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/487 (11%), Positives = 118/487 (24%), Gaps = 86/487 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--------TV 52
           MS++   N         +     +  NI NA    +            +         + 
Sbjct: 1   MSIIETIN----GLMINNDYIDIVSNNIANASTIGFKSSTPSFFDIVSHSFYSNQIIKSG 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   +  +N  D VL   +  +    +   F  + +                        
Sbjct: 57  VGISNLVQNFSDGVLVQTNRDLDLGIVQDGFFRVLD------SKGYVYYTRNGHFLLDKN 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N     L        +      N           +  K   L      +   +  +
Sbjct: 111 KNIVNGQGMYLT------GQNQFDLKNNLNSISNLEPINLRKSDLLSAKATSQIKLKADL 164

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +ND     + +  +               SEI  I+   +N N   +  S          
Sbjct: 165 INDFSSTNSITGKND----------DISNSEIHDITIYDKNENPHKLNISFNQIDDHQWK 214

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +I                                         Q+ D  +P  +   D 
Sbjct: 215 LNI-----------------------------------------QLNDEKIPDNEIINDN 233

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    +     +   ++     I      L+  L   + ++    P    + +   
Sbjct: 234 FILKFDSEGNLISNSSLQIKSKNSKNIILDPITLN--LECFLEKSETNMPSIELSQNGYT 291

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
            G     + L N + +  Y +               +P      + ++         W  
Sbjct: 292 KGFLKHFEILNNGEIIGQYTNEEEQKIGQIFLAKFINPEKLKPESGSI---------WSA 342

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + S    +       F  +   +  +  V+L +EL  +I  +++Y  S +     D+++
Sbjct: 343 THESGQEKIGAAGDQGFGSLYTKFLESSNVDLNKELINMIIAQRNYQSSAQAFKTEDRII 402

Query: 473 QTLLEGV 479
            TL+   
Sbjct: 403 NTLVNLK 409


>gi|91785627|ref|YP_560833.1| flagellar hook-associated protein FlgK [Burkholderia xenovorans
           LB400]
 gi|91689581|gb|ABE32781.1| Flagellar hook-associated protein [Burkholderia xenovorans LB400]
          Length = 657

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 122/411 (29%), Gaps = 18/411 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTV 52
           +  + N   +  N A     +  +NI NA    Y     +   S             V+ 
Sbjct: 1   MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVYAESGGQYTGSGYLPQGVST 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T   +        L+   S+        +  +    +             I+     L+
Sbjct: 61  TTVTRQYSQYLTTELNNAQSSSSSLSTYNTLISQLNNLIGSPTA--GIASAITSYFTGLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + S N S     +T +  A+ +V   N + ++   +R   + ++   +S +  +  ++  
Sbjct: 119 NVSNNASSLATRQTAMSGAQTLVNQINAAGQQYDALRQSVNTQLTNTVSQINSYSQQIAQ 178

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   +      +  LDQRD+ +  +S++IG++ +  +N    V+ S+G  L  +  
Sbjct: 179 LNGQIAQASTQGQPPNQLLDQRDLAVSNLSQLIGVNVV-NSNGSYSVFMSNGQPLVSSTN 237

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   ++   +                   +   S +  G +  LL  R   +   +
Sbjct: 238 SYNLGTAPSTGDTSELSVQYLGQAGANPAATPQNLPDSKIDGGTLGGLLAFRSQTLDPGE 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QL  +A       + ++ +        G  +            Q             + 
Sbjct: 298 AQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFADAT 357

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                D         + + + +    + +    S   N +     G     
Sbjct: 358 QPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAG 408



 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/360 (9%), Positives = 87/360 (24%), Gaps = 1/360 (0%)

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            +     +  +    V   N     +   +  A   +           +    +N +   
Sbjct: 296 GEAQLGAIAVSFSAQVNAQNGLGITLAGAKGGALFSVGGPTVYANTQNTGNASLNVSFAD 355

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T      +             +    +     N +  +   +  TT           E 
Sbjct: 356 ATQPTTGDYTLAYNGTTYTLTDNSTGTVVGSATNLSQPINGLNFSTTGTMNAGDSFTVEP 415

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                 +  +       +  ++   +A            + +V   +            G
Sbjct: 416 TRGALNSFATATTDASAIAAAAPVLAAAAASNTGTATITQGTVTAGYTMPNSTTTLSYDG 475

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR-DGGSVS 358
           +     P                I      +    +    +     +            +
Sbjct: 476 TGLSGFPAGSTVTVAGTPPTTYTIASAATVVPYSSATGATLTINNATAGQMNNVSVTISN 535

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +   +       N   ++   + +    A     VTL     N +  +    +  
Sbjct: 536 APAAGDKFTIGPNTGATNDGRNALALSNLSTAKAMSGGTVTLTGAYANYVNNIGNQTNQI 595

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +   I+ +  +  GVN+ EE + L++ +Q Y  ++K+I     + QT+L  
Sbjct: 596 QTSSTAQSSLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQTILGI 655


>gi|240145497|ref|ZP_04744098.1| flagellar basal body and hook protein [Roseburia intestinalis
           L1-82]
 gi|257202312|gb|EEV00597.1| flagellar basal body and hook protein [Roseburia intestinalis
           L1-82]
          Length = 551

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/553 (7%), Positives = 112/553 (20%), Gaps = 77/553 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46
           ++     A +       +   I  NI N +   +     +                    
Sbjct: 1   MMRSMYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATG 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHY 103
              V               +    S A             +         ++ + +    
Sbjct: 61  TGGVNAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                          +                     +   ++ ++           +  
Sbjct: 121 AGSFYVDGAGNLCM-TSTGYTVMGWQVDPTTGNIKKDTVSALRVMQTSNLTSAPEATTQA 179

Query: 164 RR----------------------------------------------FLSELTVVNDAI 177
                                                            +    ++N   
Sbjct: 180 NVSGIIDKNDKDVLSDNGLVKTLTFFDNLGYSYTARFAMKSTGTDGKYTVELEKILNSDG 239

Query: 178 KFKTASKHDAHDFLD-----QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                 +    D  D       +  L   S++         +N   V +    T      
Sbjct: 240 TTFYDPETSKVDLSDIFGAKTTNATLGTYSQVQSGYYYDSASNKFYVGSDANGTEISWNQ 299

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
              +F    +   T     ++     + S   +      I          V  +      
Sbjct: 300 ATNSFTDGKNPATTYSLKQVYGIPDAMVSKIANKQATAAIANGTLTISGDVTDYAIDFST 359

Query: 293 MARVLI-----GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                       S ++ + +  N   +           +D    +  +          + 
Sbjct: 360 KDGTFTGVGARTSNNKTNSVTLNMSKLGNNPTQFDDITIDFSGLKDANNGGKSTAVMSTG 419

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                  G   K       ++     +   Y +   +      VA       L +   N 
Sbjct: 420 SIDDGVTGKGKKLGAMIGISIDNNGLITGIYDNGNKETLGQIAVAQFANASGLEKVGENC 479

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                 N  +   +  +     + ++        V+L  E + +I  ++ +  ++++I  
Sbjct: 480 YRTT-LNSGEFDGIGDEISADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITT 538

Query: 468 TDKMLQTLLEGVK 480
           +D +L+ L+   +
Sbjct: 539 SDTLLEELVNLKR 551


>gi|154250212|ref|YP_001411037.1| hypothetical protein Fnod_1537 [Fervidobacterium nodosum Rt17-B1]
 gi|154154148|gb|ABS61380.1| protein of unknown function DUF1078 domain protein
           [Fervidobacterium nodosum Rt17-B1]
          Length = 770

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 98/347 (28%), Gaps = 5/347 (1%)

Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTV-VNDAIKFKTASKHDAHDFLDQRD 195
           +F  +  +   IR   D      I      L+     + D       S  D      + D
Sbjct: 426 SFEYTQGKYGVIRTVRDSVSGNVIGTYNVLLTNGANTIYDDNFISGNSYIDEIYQPSKVD 485

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
           ++    +            N  VV          T   D        Y    +   ++ +
Sbjct: 486 MITIPGAGEPRFYEADNPTNFSVVSFKSPFYTTSTQVYDSLGNPYTLYIDFVKLASVYGN 545

Query: 256 GVVVSSNQGSAVPKGKIKAL--LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                + +  +     IK L        +       L       +   +  DP  G    
Sbjct: 546 HENAWAFRIRSASGENIKYLSNYDTATEITGGTCGVLRFDKTGRLLGVNSFDPSTGRISE 605

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
              +         +      I   +    Q+ +           + + +    +++   D
Sbjct: 606 GENVDAILFNAGENGDGIVKIKLDLNSMTQFAALADAFVKNQDGNAQGVLESFSISENGD 665

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           +I  + +          +A  N    LLE   +  G  E   S +  +   S+  F  + 
Sbjct: 666 IIGSFTNGLVDVLGKVALATFNNPAGLLELGNSLYG--ESANSGTARIGQPSKGGFGSLV 723

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L EE + LI  ++ +  + + I   D++LQ ++   +
Sbjct: 724 AGALEMSNVDLSEEFTKLIIAQRGFQANARTITTADQILQEVVNLRR 770



 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/453 (6%), Positives = 98/453 (21%), Gaps = 21/453 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++       +      Q+   +  NI N +   +         +   +  +++R+ +   
Sbjct: 1   MMRSLYSGVSGLQGFQQEIDVVSNNISNVNTIGFKGARVTYATNFSQILDMSRRATDNTG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +       +  +              E      +              
Sbjct: 61  GTNPKQIGYGIRVASIDKIMNQGSFQNTGKKTDLAIQGEGFFILSNGQRQFFTRAGNFDL 120

Query: 110 SLESYSKNL-SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            L        +   L   V +      + +  + + +  I+  +   +  + +       
Sbjct: 121 DLNGTIVQPTTGLKLQGWVAEVDPMSGRRYVDTNKPISNIQISSGLSMAAKQTTRMTMAG 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L       KF  A        ++ +    +    +    +  +     +    D     
Sbjct: 181 NLDARVGPEKFVIAINGYGGRTINTKVSFERDFGALQDTFSDYQVYLGKIDANLDDKVDG 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +   +   F  + +     +       G  ++         G    +++  +  +    +
Sbjct: 241 KVYIKFDKFGNVVNAGAIKQKLSGTASGGALTLTNPIQQQDGNYLFIIRDSNGKIVDTLS 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +      V     SEK                   + +   +               SN 
Sbjct: 301 RNVLNGSVTEAITSEKLVDGQTYSVEIAAST---QEVVPLDMQFDYQTVASTANGQLSNN 357

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             ++            +              D+         V  +       +   + +
Sbjct: 358 FTVQYVVENLDGTPVAIAPQNITSSGTQSISDAALTPGTQYRVKVMING----KVFGSEV 413

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                + ++       +Q  +  I     +  G
Sbjct: 414 VTATTDGANGRISFEYTQGKYGVIRTVRDSVSG 446


>gi|327478809|gb|AEA82119.1| flagellar basal body FlaE domain-containing protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 396

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/474 (10%), Positives = 112/474 (23%), Gaps = 79/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A    +  ++Q  +I  NI N+    +    T           +           +
Sbjct: 2   SFNIALTGLSAVNEQLNTIGNNIANSGTVGFKSSRTNFGSLYAETQAMGVEVIG---TTQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    +     R L    +            +             +SY  N        
Sbjct: 59  SISQGGALTSTNRTLDLAISGGGFFVTRASNGDVGYTRAGIFGTDKDSYITN-------- 110

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                         +  + +Q   ADA                 +  +        A   
Sbjct: 111 --------------SLGQRLQGYPADATG---------NLQTGTVGDLQLRSGGIPARAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           DA  F+   D   +        +            ++  T L+++  ++    +    T 
Sbjct: 148 DALSFVANLDANQEVP------TVAFDPQAADSYNSTYTTKLYDSQGKEHTLTQYFVKTG 201

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  N  +       +    A+       L                              
Sbjct: 202 DNSWNAHYYVDGTALAGAPQALTFDSAGVLAA---------------------------- 233

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                    P   +A             I        QY S  S   +  +         
Sbjct: 234 ---------PIGSVALAAPLTGGVAPLAIQLDYSGTSQYGSEFSVTNNRATGYAAGEQTG 284

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +A       L     +   W E   S +  L    
Sbjct: 285 MSVEKDGKVYATYSNGERMLQGQVVLASFVNAEGLKNI--SGTAWTETAASGAAMLGAPG 342

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              +  ++     +  V+L ++L  L++ +++Y  + ++I    ++ Q L   +
Sbjct: 343 VGQYGTLASGALESSNVDLTQQLVGLMEGQRNYQANTQVISTNKELTQVLFNAI 396


>gi|331646334|ref|ZP_08347437.1| flagellar hook protein FlgE [Escherichia coli M605]
 gi|330910890|gb|EGH39400.1| flagellar hook protein FlgE [Escherichia coli AA86]
 gi|331045086|gb|EGI17213.1| flagellar hook protein FlgE [Escherichia coli M605]
          Length = 401

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 111/473 (23%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        + +N           N  +  KT +  
Sbjct: 97  NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L+  D L    +           +N          T+F++     +       T 
Sbjct: 153 SMQLNLNSSDPLPSVNA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +       D    +                      +      L   A  ++ S    +
Sbjct: 205 DNNWQVYTQDSSDPN---------------------SIAKTATTLVFNANGVLTSDPTAN 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 244 ISTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|187924404|ref|YP_001896046.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans
           PsJN]
 gi|187715598|gb|ACD16822.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 410

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/473 (8%), Positives = 111/473 (23%), Gaps = 64/473 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +    +  + AS     I  NI NA+   +                           + 
Sbjct: 2   SYQTGLSGLSAASTDLDVIGNNIANANTVGFKSSTAQFA---------------DMYANA 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           V+ A ++ +G   +       ++  S            I+   +     S N +      
Sbjct: 47  VMTAANNQVG---IGTRLSTAEQDFSNGTFSKTDRPLDIAINGNGFFQLSNNGALVYSRN 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            V    +        +A+ +  +      + ++   ++   +     +        ++  
Sbjct: 104 GVFHLDKS---GVIENAQGLPLMGYSPGPDGKMNTGSVGPLMVSSASLPPTATKTISAAF 160

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +               S+    +     ++          +++ ++    +         
Sbjct: 161 NLD-------------SQDPVPTNPFNPSDPASYSYGQPMSVYNSLGGSQSTNVYFVKKA 207

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T   +     G   +       P G +  +       +                      
Sbjct: 208 TGSYDVYGTSGNPPA--PVGPNPSGSMGTITFDTSGHLTS-------------------- 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  N   L         +    Q ++  +    QY             +       
Sbjct: 246 ------PNASALTFNIPNAADNGATTQSLTLNLTGTTQYAGKNGVTALLPDGNSSGQLTG 299

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     L   Y +          +A  +    L     N         S +  +    
Sbjct: 300 FSVGEDGTLTGSYSNGATLVLGQVALATFSNPNGLANMGNNLYAQTG--DSGAAQVSSPG 357

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +    +    V+L  +L  LI  +++Y  +++ I     + Q L+  
Sbjct: 358 STNHGVLLGGQTEDSNVDLTHQLVDLITAQRNYQANSQTIKTQQTVDQALINL 410


>gi|87119676|ref|ZP_01075573.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121]
 gi|86165152|gb|EAQ66420.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121]
          Length = 565

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/568 (10%), Positives = 128/568 (22%), Gaps = 100/568 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPENVT 51
            FN A +    ++   +    NI N+D   + +                         V+
Sbjct: 2   GFNTALSGIKASADALSVTGDNIANSDTTGFKQSRIEFGDLYNTSVVGAGSNNTIGSGVS 61

Query: 52  VVTQRSENK----NMFDKVLHAH-----------SSAIGQQRLLQSFEALKEMMSADDHY 96
           V               D  L                     R           +  +D  
Sbjct: 62  VNNIAQAFSAGNIAYTDNNLDLAVDGTGFFVLNLGGTQAYTRAGDFKLDADGFLVTNDGA 121

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           N    + +  +        +  ++ I  +   D  +  +   + S      I  D D   
Sbjct: 122 NVEGYNAVDGIVGGNLENLQVPTDRIAPQATSDI-QLQINLDSESNDVPPFIEEDFDPND 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHD------AHDFLDQRDVLLQKISEIIGISTI 210
                  +         N+ I     +K D       H  +D         + I      
Sbjct: 181 PETYDFTQTQAVADAAGNNHIVTYYYAKSDLPNTYQVHASVDGAATDDTGAAWIPEQYVT 240

Query: 211 VRNNNDMVVYTSDGTT-----LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
                +   +  DG       L            +     T  +    ++GV ++     
Sbjct: 241 FNGPEEGKDFNLDGIPEDPFQLLYMGAAKPTTAGVTGLVQTPIAVTGTLNGVAITDTMQG 300

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-- 323
           A     I    +  D   P          + L  +  E+  +             + +  
Sbjct: 301 ANVVSPISVAREAFDPSDPATYT--YGNTKTLYDALGEEHTLGYYFIKQGENNTFEMVVT 358

Query: 324 --------KDLDNKLCQGISETICVNPQYRSNPSFLRD---------------------- 353
                     +  ++   I + + V      N S +                        
Sbjct: 359 VDGKTEYEDPITGEMTSYIPDDVVVTFDTAGNISSVAQGFPPFAVTQPITLEIKGFDPTN 418

Query: 354 -----------------------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                                                      LI  Y +          
Sbjct: 419 REAVIPIDMNGSTQFALSSSDVFMQDGFTAGELQGVMFDEDGFLIATYTNQQTSVLGQIA 478

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A  +    L         W+  + S   ++   +      +  +      V+L  EL  
Sbjct: 479 LATFDNTDGLTP--SGDTSWVASSDSGQANVGKPNTGTLGSVQGAALEESNVDLTSELVA 536

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           LI+ +++Y  ++K +   + + QT++  
Sbjct: 537 LIEAQRNYQANSKTLETENTVTQTIINL 564


>gi|242308880|ref|ZP_04808035.1| flagellar hook-protein FlgK [Helicobacter pullorum MIT 98-5489]
 gi|239524544|gb|EEQ64410.1| flagellar hook-protein FlgK [Helicobacter pullorum MIT 98-5489]
          Length = 609

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/457 (10%), Positives = 121/457 (26%), Gaps = 35/457 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------ISPENV 50
            LL+  N              ++  NI NA+N+ Y R+   +               + +
Sbjct: 3   GLLSSLNTPYTGLTGHQVMVDTVSNNIANANNEFYTRQVVRSAAQTPLLVSSNYAIGQGL 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             +T    +           S          S           +       + +    ++
Sbjct: 63  DTLTVERVHDEFTFSRYKKASMEKTYYDTSFSGLKEASSYY-PEVDGVGIYNDLQNYFNA 121

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            +  S    +      + + A  +  N + +   +  ++   + E+++ +  + R   ++
Sbjct: 122 WKDLSTKAGDSAQKIALAEQASTLANNISATRERLVNLQQRLNDELKVAVDEVNRLGEQI 181

Query: 171 TVVNDAIKFKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRN------------NND 216
             +N  I           A+D  D RD    +I+ +IG                   + +
Sbjct: 182 AQINKKIAEYENQQLNQKANDLRDLRDQYEFEINNLIGCDVFKEGLKGSACVDENIADFE 241

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                + G                NS   +   +  ++       N  +++  GK+ A+L
Sbjct: 242 EGYTLTIGGKSIVDGTSFHPLTLDNSQNESGIYSIKYLRSDHKEFNLTNSLSDGKVGAIL 301

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
            +  +   +  N      +V I            + N      +      D         
Sbjct: 302 DLIRTEDVLTCNGTLGKLQVYINDLDTFANGLIEATNNIYAQSSQLEARSDALNINIQDA 361

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                    +    +       ++      N+ G  ++ +        N   D     N 
Sbjct: 362 LTTSGYNINNGSFKVVMYNKQGEEIGTRTVNIDGLTNMQSILDQL---NANVDGNGDANA 418

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           +    +        +    +D+    + S+     I 
Sbjct: 419 SNDFDDRF------VATFNNDTKTFAITSKNPAEEIY 449



 Score = 90.5 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 62/192 (32%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N  ++     + +F+        +   P   I   I+D               +    SN
Sbjct: 417 NASNDFDDRFVATFNNDTKTFAITSKNPAEEIYISIQDNGTNFAGAFGVNRFFDGNDASN 476

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
               +   +         + + G  ++ N           F    G   N T+  Y R  
Sbjct: 477 IQLAQSYKNDPTLIHAYREAVDGNFEVANMMQQLQYDKITFTDSEGNIQNETISGYFRFI 536

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      +       + V+  I + Y     V++ +EL  LIK +  Y+ + K++  
Sbjct: 537 ASKVASQTESTQITQETKEAVYVSIKQEYKAISEVSVDDELVNLIKYQSGYSANAKMVST 596

Query: 468 TDKMLQTLLEGV 479
            D+ML TLL   
Sbjct: 597 IDEMLNTLLGIK 608


>gi|78062976|ref|YP_372884.1| flagellar hook protein FlgE [Burkholderia sp. 383]
 gi|77970861|gb|ABB12240.1| conserved hypothetical protein [Burkholderia sp. 383]
          Length = 414

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/469 (11%), Positives = 99/469 (21%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    A+     I  NI NA+   + +          N                    
Sbjct: 6   GLSGLAGAANHLDVIGNNIANANTVGFKQGRANFADMYANSV------------------ 47

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            +S   Q  +     ++++        +   +  I+   +     S N         V  
Sbjct: 48  ATSTNTQIGIGTRLVSVQQQFGQGTINSTKSSLDIAINGNGFFQMSNNGVTTYSRDGVFH 107

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
             +                                  + +    N               
Sbjct: 108 RDKSGA-------------------------------IVDAQNRNLMGYAAGPGGAINTA 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                      IS         + N +            + VP    F   ++ T    S
Sbjct: 137 ATVPLQAPTSNISPQATTKITGQFNLNS----------QDKVPAKTPFNAGDNTTYNYNS 186

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  +        K                  N             S      G
Sbjct: 187 SIQVYDSLGGAQQVSMYFTKNAAGTWQAYAGVQGQTPTNLGTVTFDASGRISSTTSAATG 246

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 G F             Q ++  +    Q+                      ++ 
Sbjct: 247 QPTPSLGQFAFSIPNASGGANPQNLTLDLGGTTQFGGKSGVNNLAQDGFASGTLTTFSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               L  +Y +  +       +A  N    L     N   ++E   S    +        
Sbjct: 307 TDGKLTGNYSNGQSAVLGLIALANFNNPNGLENIGGNQ--YVETAASGVPQISAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  EL  LIK ++ Y  + + I     + QTLL  
Sbjct: 365 GTLQGSALENSNVDLTTELVNLIKAQRDYQANAQTIKTQQTVDQTLLNM 413


>gi|281411901|ref|YP_003345980.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10]
 gi|281373004|gb|ADA66566.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10]
          Length = 755

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/451 (10%), Positives = 120/451 (26%), Gaps = 24/451 (5%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
           Y   DT    +  N ++    + +   +  ++   S  +              +   D  
Sbjct: 323 YSADDTRNVTASSNGSISDTTTLSDGTYQAIVLDSSGNVVYNGTTTVSSGSFTISDPDIV 382

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
             N+ T  +S   D+    +  +S              +  + N        +   +   
Sbjct: 383 SGNNYTVILSSNSDAQTITAIGISGTTTLSDGTYQTIVLDSSGNVVYNGTTTVSGGSFTI 442

Query: 156 IELEISNLRRFLSELTVVND---AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI-- 210
            + +I+    +   L   N+   ++     ++       + R       +  +       
Sbjct: 443 NDSDITAGNNYTVILLTPNNASNSLTIAPGAELVIPTSGEPRFYESDNPTNFVQTDYTSP 502

Query: 211 -VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                  +     +  T++    R  N    +     +     + D     S        
Sbjct: 503 RYTTAVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWRAYTDSGEPISLIDEDGGS 562

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G +  L+   +S  PI    LD    +  G        AG                    
Sbjct: 563 GYVAGLIDFDESGRPIQYRGLDSSYNLSSGEVRTIQFDAG----------------QSGD 606

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               I+       Q+  + +        +   +     +    ++I  + +         
Sbjct: 607 GVVTITADFSGATQFSGDSTLNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQI 666

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +A  N    L E   +   ++    S    +          +         V+L EE +
Sbjct: 667 ALAVFNNPSGLSEVGNSL--YVVSANSGVPKIGAPGSGGRGILIPGALEMSNVDLAEEFT 724

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +I  ++ +  + ++I   D++L  L+   +
Sbjct: 725 KMIVAQRGFQANARVITTADQILNELVNIKR 755



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/433 (7%), Positives = 103/433 (23%), Gaps = 14/433 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           N       +  NI N +   +                  +       
Sbjct: 1   MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGR------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +   +   Q  L     ++ ++M+     N      ++   D     S   S   
Sbjct: 54  -SSQENVGGTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                            ++  +VQ   A  D E      +  + + +L +          
Sbjct: 113 TRAGAFTLDSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNKPIGDLVISAGMTMPAKK 172

Query: 183 SKHDAHDFLDQR----DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
           + +   +            +  +++  GI+  VR   +             +    +  +
Sbjct: 173 TSNVRFEGNLNSKLGPGSFVITLTDENGINHDVRVWFEKTQSDLGTDPFSSSQRYTMKID 232

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             N  T   +   +F +   V      A  +      +    ++       +   +   +
Sbjct: 233 IDNDGTADVDGYMVFNEFGRVEEAGVYAESQTMTAIGISGTTTLSDGTYQTIVLDSSGNV 292

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                    +G+        ++     +              +    S+ + L DG   +
Sbjct: 293 VYNGTTTVSSGSFTISDPDIVSGNNYTVILYSADDTRNVTASSNGSISDTTTLSDGTYQA 352

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +   +      ++    + +   I           +  +    +I  +  + + +
Sbjct: 353 IVLDSSGNVVYNGTTTVSSGSFTISDPDIVSGNNYTVILSSNSD--AQTITAIGISGTTT 410

Query: 419 HDLHMKSQVVFNH 431
                   +V + 
Sbjct: 411 LSDGTYQTIVLDS 423


>gi|144900942|emb|CAM77806.1| flagellar hook protein FlgE precursor [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 430

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/480 (11%), Positives = 120/480 (25%), Gaps = 50/480 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL+   N A       S   + I  N+ N+    Y    T                   
Sbjct: 1   MSLMGAMNSAVTALKAQSTALSIISDNLSNSSTTGYKANTTSFKT--------------- 45

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +  +   + S A G            + + +    +                 +   + 
Sbjct: 46  -LVTQSYSSTSYASGGVTASVRQNVAAQGVISGTSNSTDLALDGDGFFVVSYGATGEETF 104

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                    ++   +   N     +Q    D+   +                    I   
Sbjct: 105 FTRDGEFEIDSAGFMCLGNY---YLQGWETDSSGNV--------------------IAGS 141

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T S          R     + +    I   +  +       +    +F+ +         
Sbjct: 142 TNSSSTLSAVNVNRFTGTAEATSAETIQANLPADAATGDVVTATMEVFDALGVSHTVTMS 201

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              T  +E      D V+ S     +         L   D  +    +         + +
Sbjct: 202 YEKTAANEWELSLSDPVLSSDTATDSGDITGGPFTLTFADGALTSITD------AGGVAT 255

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
             E      ++       IA  +    +        +   +     + S     G   + 
Sbjct: 256 ELEFSITGFSTGASDIATIAIDVGQGTSGTGSLTQFSSNSDDP---DISITSITGDGVEY 312

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +   +     +  H+ +  +       VA       L         + + + S    
Sbjct: 313 GALSSVEVDKKGVIWAHFDNGQDIAIYKLAVADFTNANGLENQGYGV--YQQTSASGDFT 370

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LH   +     I+ S   +  V+  +E + +I  +Q+Y+ ++++I     M   L+  V+
Sbjct: 371 LHEAGEDGVATITPSALESSTVDTSDEFTRMIVAQQAYSAASQVISTASDMFDDLMAAVR 430


>gi|254248705|ref|ZP_04942025.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184]
 gi|124875206|gb|EAY65196.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184]
          Length = 414

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   + +          N    +  +       +    
Sbjct: 6   GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            +     I   +                    +                 +     L   
Sbjct: 66  QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +                +  + + L+           + +          K  
Sbjct: 126 AAGAGGVI----------------NTAQTVPLQAPTSNIAPRATSRITGQFNLNAQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A    +  D      +  I +   +  +  + +Y + G          +           
Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKGAAGTWQAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                        +    +    G++ +              Q                 
Sbjct: 220 --------GQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQF---------------- 255

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    QY                      
Sbjct: 256 ------------AFSIPSTTGGANPQNLTLDLGGTTQYGGKDGVSNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +  +       +A  N    L+    N     E   S    +     
Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQVSAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      VNL  EL  LI  +++Y  + + I     + Q LL  
Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQALLNL 413


>gi|304397204|ref|ZP_07379083.1| fagellar hook-basal body protein [Pantoea sp. aB]
 gi|304355353|gb|EFM19721.1| fagellar hook-basal body protein [Pantoea sp. aB]
          Length = 418

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/476 (9%), Positives = 111/476 (23%), Gaps = 63/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +    AS     I  NI N+    +               V       +  +N 
Sbjct: 2   SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +L         N     
Sbjct: 62  NDGATTTTSRGLDVALSGNGFFRMTD------SSGGVFYSRNGQLTLDANRNLVNTQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +       +   +Q                                              
Sbjct: 116 VTGYPASGSPATIQ---------------------------------------------- 129

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +        + +  + +   G+   + + +      +  T   ++  +       +S
Sbjct: 130 AGANPVALRIPTEQMPARATTTAGLVANLNSTDTTPSVPTFSTANADSYNKKTTATVFDS 189

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  +  F      +S     +      +    R                 +    +
Sbjct: 190 QGNDHALDMYFAKDTASNSWTVRTIDANTGLSAGDFR------MAFDTSGKLTSVSKLNA 243

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                +  ++   GL +  G  +            +    Q     +F            
Sbjct: 244 NGTVASTTTDGTVGLTLNVGGANGAVANQPITMSMLGSLQQNTGATNFGSPTQDGYAPGD 303

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      ++  +    L     N   W   + S    + 
Sbjct: 304 LTSYAINNDGTITGSYSNQKTQLLGQIVLSSFSNPEGLQSKGDNV--WQASSASGQAAIG 361

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + +   F  ++     +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 362 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 417


>gi|161777623|ref|YP_427619.2| flagellar hook protein FlgE [Rhodospirillum rubrum ATCC 11170]
          Length = 460

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/487 (10%), Positives = 123/487 (25%), Gaps = 37/487 (7%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ------ 55
           SL +  N A +  N  S   ++I  N+ N+    Y   +             +       
Sbjct: 3   SLSSSLNVAVSAMNAQSSSVSAISNNLANSSTIGYKTSNASFYSLVTGTGSTSNFTGAGV 62

Query: 56  --RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              +    +   V+    +        +    + +   +++ Y             + + 
Sbjct: 63  VASATQNVINQGVIVGTQNVTDLAVDGKGMFIVTDRSGSNELY----YTRAGDFYPNADG 118

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
              N +   L     D     + N   S   ++ I            S +          
Sbjct: 119 DLVNSNNYYLQGYPTDRNGVPLTNTGNSGASLETINLAGATGAAKATSEMSIQAVLPAQA 178

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
                             D        ++  + +     ++    +   D          
Sbjct: 179 TAGDSTAVPPVAAYTSSSDVEIYDSLGVAHTMTVKWTKMSDTKWTMTLYDPK-------- 230

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                   +   T   +        V +N G       I   ++  D  +    + L   
Sbjct: 231 ---LSSDMTGDATGAISSTTTGVTDVPANAGPPATSHGIAVDVEFTDQGLLKTPSVL--- 284

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                    +  P A N        IA  +                 + +   +   +  
Sbjct: 285 -------ALKITPDASNGTGAAISEIALNLGTAGKANGLSTYSNEDSDGKPAVDLKKVVQ 337

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G     +  N  + AG   +  ++ +  +      P+A  +    L     +   +   
Sbjct: 338 DGVTYGTYYSNTISKAGL--VYANFTNGISYPIYQVPLAMFSNVNGLEAV--SGTAYSAT 393

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            +S +             +S     +  V+   E S LI  +Q+Y+ + ++I    +M Q
Sbjct: 394 VKSGTPTYVTAGTGGSGGVSSGSVESSTVDTAAEFSKLIVSQQAYSAATQIISSNQEMFQ 453

Query: 474 TLLEGVK 480
            L+   +
Sbjct: 454 NLISAKR 460


>gi|291617020|ref|YP_003519762.1| FlgE [Pantoea ananatis LMG 20103]
 gi|291152050|gb|ADD76634.1| FlgE [Pantoea ananatis LMG 20103]
          Length = 415

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 105/476 (22%), Gaps = 66/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +    AS     I  NI N+    +               V       +  +N 
Sbjct: 2   SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  L     A             +          N     
Sbjct: 62  NDGSTTTTSRGLDVALSGNGFFRLTNSAGAVS------YSRNGQFTLDQNRNLVNTQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                                                     +     
Sbjct: 116 VTGYPASG----------------------------------------------VPPTIQ 129

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S  +          +    +        + + +  +  T    T   T          ++
Sbjct: 130 SGANPVAIKIPTTQMPANATTTANQVAKLNSTSAALDDTKFSATDPTTYSAKNTITMYDT 189

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              +   +  F+     +          KI  +     S V  +Q   +   ++   S  
Sbjct: 190 QGNSHSLDLYFVKTADNT---------WKIHGIDSTAGSNVGNYQMSYNANGQLTGVSSL 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +                                  +    Q     +F     +      
Sbjct: 241 DATGNVVAGSTTASTATVTIPGVNGANGTTVALNFVGSLQQNTGATTFGNATQNGYAPGD 300

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A  +    L     N   W E N S    + 
Sbjct: 301 LTSYAINNDGTITGSYSNQRTQLLGQIVLASFSNPEGLKSQGDNV--WAETNASGQAAVG 358

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + +   F  ++     +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 359 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 414


>gi|170751912|ref|YP_001758172.1| flagellar hook-associated protein FlgK [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658434|gb|ACB27489.1| flagellar hook-associated protein FlgK [Methylobacterium
           radiotolerans JCM 2831]
          Length = 627

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 130/431 (30%), Gaps = 19/431 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---ENVTVVTQRS 57
           MSL    + +             + +N+ NA    YV+R   T  +      V +     
Sbjct: 1   MSL-NAISTSAAGLAATQAAINIVSQNVANAGTAGYVKRTLSTVANGPNNSGVAIGQITR 59

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                    L   +S               + +      + S    ++   +SL+  + N
Sbjct: 60  SFDAAALNQLRLETSGAAYTSTKSGIATQLDALYGVPGSSTSLDGTLNTFTESLQELAAN 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +      TV+ NA  V    N++A  VQ +R   + ++  + S     LS +  +N  I
Sbjct: 120 PTSAAARTTVLGNASAVASLINSAAGTVQNLRTGLEAQLGTDTSAASTILSNIATLNGKI 179

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI-- 235
           +  T S     D  DQRD  +  +S  + + T+ + +  + V T  G TL +        
Sbjct: 180 QNTTDS-TALTDLQDQRDQAINSLSSYMDVQTVPQRDGTVSVMTQSGVTLVDRGNAATLS 238

Query: 236 -----------NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                       +    +             G  +       +  G + A +++RD  +P
Sbjct: 239 FDGRGVLGPNATYSTDPAQRTVGTITATLPGGGKIDLGAPGVLRSGSLAAEIEMRDQTLP 298

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             Q QLD++A  L  + +        S     + ++              +     N   
Sbjct: 299 QAQRQLDDLAAGLSTALTNTATTGTYSGTDTQISVSTMKPGNTITFPVTDNTGAVRNVTL 358

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            ++ +        ++    +   L            +      F+      +   L   +
Sbjct: 359 VASATSSGTIVPAAQTTDSSGLTLTFNASGGPSTYAA-AIQSAFNTFNASGSAYKLPTLS 417

Query: 405 RNSIGWLEKNR 415
              +     + 
Sbjct: 418 ATPVSSTGTSA 428



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/411 (11%), Positives = 113/411 (27%), Gaps = 16/411 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
           S      +   D     + +     +     +YS + ++  +G            +    
Sbjct: 219 SVMTQSGVTLVDRGNAATLSFDGRGVLGPNATYSTDPAQRTVGTITATLPGGGKIDLGAP 278

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                   A   +  +  +   +R L +L          TA+         Q  V   K 
Sbjct: 279 GVLRSGSLAAEIEMRDQTLPQAQRQLDDLAAGLSTALTNTATTGTYSGTDTQISVSTMKP 338

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
              I             V      T   T+         +  T+T  ++         ++
Sbjct: 339 GNTITFPVTDNTGAVRNVTLVASATSSGTIVPAAQTTDSSGLTLTFNASGG--PSTYAAA 396

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            Q +        +  ++         +        L  +       + +   V    +  
Sbjct: 397 IQSAFNTFNASGSAYKLPTLSATPVSSTGTSATLTLGAAGKVAGAASASVSAVSASDLNT 456

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   L   +    ++    +    S  +      +V+     N   L            +
Sbjct: 457 GNPSLAMFVDGSGNKLYTGSFDGGSQLTGFAQRITVNGALSGNTAALTATSATDTSASGA 516

Query: 382 FNKNFIFDPVAGINT--------------NVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
             +       A   T              + +++ +A++ +     N S++  L    Q 
Sbjct: 517 RAQKLFTALTATPQTFSSSSGIGGVSAPYSTSVIGFAQDIVSTQGANASNASALDATQQT 576

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +     +S   GVN+ +E+S LI ++ +Y  + +++     ML  LL+ 
Sbjct: 577 ALSTAQSRFSAGAGVNIDQEMSNLIALQTAYGANARVLTAARDMLTQLLQI 627


>gi|83747654|ref|ZP_00944690.1| FlgE [Ralstonia solanacearum UW551]
 gi|207728346|ref|YP_002256740.1| flagellar hook protein flge [Ralstonia solanacearum MolK2]
 gi|207739737|ref|YP_002258130.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609]
 gi|83725706|gb|EAP72848.1| FlgE [Ralstonia solanacearum UW551]
 gi|206591592|emb|CAQ57204.1| flagellar hook protein flge [Ralstonia solanacearum MolK2]
 gi|206593119|emb|CAQ60025.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609]
          Length = 401

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/473 (12%), Positives = 113/473 (23%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T      +      +  R  Q              ++   ++   T  N       A+  
Sbjct: 87  TGFYRMVDTSSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYAADATGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  ++ +   +T    N D             TVP    F   NS T 
Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFTINLDAA----------GTVPTTTPFSATNSATY 184

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +    DG   S    +   +      +                             
Sbjct: 185 NHSVSEQVYDGTGTSHMLTNYYVRTAAGWDVYSTVDGAAPTGGNPV-------------- 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +    +   L  +     +        S       QY    +                
Sbjct: 231 -TSLTFNSSGVLTSSPSKVAVAFTGMSIASMDFTGTTQYGGGFNDTSVTQDGYATGRLAS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +        L     N   W+E   S S  +    
Sbjct: 290 YSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D++LQTL+  
Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLVSM 400


>gi|255521665|ref|ZP_05388902.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J1-175]
          Length = 357

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 111/341 (32%), Gaps = 26/341 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L+QRD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           +++  +  L  +  +      N        I D +K   N 
Sbjct: 287 KIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPND 327


>gi|331672596|ref|ZP_08373385.1| flagellar hook protein FlgE [Escherichia coli TA280]
 gi|331070239|gb|EGI41605.1| flagellar hook protein FlgE [Escherichia coli TA280]
          Length = 401

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 111/473 (23%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        + +N           N  +  KT +  
Sbjct: 97  NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L+  D L    +           +N          T+F++     +       T 
Sbjct: 153 SMQINLNSSDPLPSVNA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +       D    +                      +      L   A  ++ S    +
Sbjct: 205 DNNWQVYTQDSSDPN---------------------SIAKTATTLVFNANGVLTSDPTAN 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 244 ISTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|327393471|dbj|BAK10893.1| flagellar hook protein FlgE [Pantoea ananatis AJ13355]
          Length = 415

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 105/476 (22%), Gaps = 66/476 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +    AS     I  NI N+    +               V       +  +N 
Sbjct: 2   SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  L     A             +          N     
Sbjct: 62  NDGSTTTTSRGLDVALSGNGFFRLTNSAGAVS------YSRNGQFTLDQNRNLVNTQGLN 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                                                     +     
Sbjct: 116 VTGYPASG----------------------------------------------VPPTIQ 129

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +          +    +        + + +  +  T    T   T          ++
Sbjct: 130 TGANPVAIKIPTTQMPANATTTANQVAKLNSTSAALDDTKFSATDPTTYSAKNTITMYDT 189

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              +   +  F+     +          KI  +     S V  +Q   +   ++   S  
Sbjct: 190 QGNSHSLDLYFVKTADNT---------WKIHGIDSTAGSNVGNYQMSYNANGQLTGVSSL 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +                                  +    Q     +F     +      
Sbjct: 241 DATGNVVAGSTTASTATVTIPGVNGANGTTVALNFVGSLQQNTGATTFGNATQNGYAPGD 300

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A  +    L     N   W E N S    + 
Sbjct: 301 LTSYAINNDGTITGSYSNQRTQLLGQIVLASFSNPEGLKSQGDNV--WAETNASGQAAVG 358

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + +   F  ++     +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 359 LANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 414


>gi|311694361|gb|ADP97234.1| flagellar hook protein FlgE [marine bacterium HP15]
          Length = 632

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/419 (11%), Positives = 114/419 (27%), Gaps = 12/419 (2%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   ++  G   L  +F +     S     N SP    +   +SL+    +++   
Sbjct: 222 LSASATTTATFDGTPALDDAFISGASSFSFSLDINGSPLTLDTSNINSLQDLVDSINNSS 281

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 + A            +V ++  +  + ++   ++        TV  D       
Sbjct: 282 ------ETAISASIVTGGGGSDVLRVIHNQGETLDFTFADGNGNGDTGTVEGDVNVTADR 335

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S           D  +   +  I ++      +      +  TT+++++       +   
Sbjct: 336 SVAGITSTTADNDFEVAFNASPIRVTNQFNPLDQRTYNHATSTTIYDSLGNSHELTQFFV 395

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR---DSVVPIFQNQLDEMARVLIG 299
              +   N + +    V +        G        R   D  +            +   
Sbjct: 396 KNPS-PGNGVGVSEWSVYAQIDGEFVGGTDVTPYTARFDQDGALQSIDGDPSGEIVIDDW 454

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
              + D     ++  P           +          +    QY +         +   
Sbjct: 455 IPKDSDGQPNGADGPPAAGEVVVTPIPEPPTTSAFVINLSGTTQYGAAFGVNDQQQNGYT 514

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  +++    L   Y +  ++      +A  N    L         W+E   S   
Sbjct: 515 TGRLSGLDVSDQGVLFARYTNGQSQALGQVALASFNNTNGLSPVGD--TSWVETFESGQP 572

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +          I  S      V+L  EL  LI  +++Y  + K I  +D + QT++  
Sbjct: 573 IIGAPDTGTLGSIKASSVEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIINL 631



 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/369 (9%), Positives = 80/369 (21%), Gaps = 19/369 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFD 64
            FN   +    AS        NI NA    +                          +  
Sbjct: 2   AFNTGLSGLRAASVDLDVTGNNIANASTVGFKGSKAQFGDLYASGFLSAGTNPIGDGVRV 61

Query: 65  KVLHAH--SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           + +        I             +     ++          +     E Y  N     
Sbjct: 62  QDVKQSFGQGNISFTDNGLDMAIAGDGFFILNNGGEIRYSRAGQFGIDKEGYVTNNQNMR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKI--RADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           +     D    +             +  R   + + +L + +    L         +   
Sbjct: 122 VQGYTADEDGNLSGIRGDLQIATDNLAPRRTTNLDSDLNLDSRESVLETRVRDVGPLTLA 181

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           +             DV     S    ++     +      T +     +      +    
Sbjct: 182 SIQGES-------FDVQYSDGSPAFNVNIDPAASAREAASTIN-----DAPGLSASATTT 229

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            ++  T   +  FI G   SS   S    G    L     + +    + ++  +   I +
Sbjct: 230 ATFDGTPALDDAFISGA--SSFSFSLDINGSPLTLDTSNINSLQDLVDSINNSSETAISA 287

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                    +   V             +    G + T+  +    ++ S      + +  
Sbjct: 288 SIVTGGGGSDVLRVIHNQGETLDFTFADGNGNGDTGTVEGDVNVTADRSVAGITSTTADN 347

Query: 361 FLWNVKNLA 369
                 N +
Sbjct: 348 DFEVAFNAS 356


>gi|317047691|ref|YP_004115339.1| flagellar hook-basal body protein [Pantoea sp. At-9b]
 gi|316949308|gb|ADU68783.1| flagellar hook-basal body protein [Pantoea sp. At-9b]
          Length = 406

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 103/476 (21%), Gaps = 75/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  + AS     I  NI N+    +               V       +  +N 
Sbjct: 2   SFSQAVSGLSAASSNLDVIGNNIANSATAGFKSSTIAFADLFAGSDVGLGTKVAAVIQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  + +                 +          N     
Sbjct: 62  NDGTTTTTSRGLDVALSGNGFFRMTD------SSGAVYYSRNGQFTLDENRNLVNTQGLY 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +       +   +Q                                     N        
Sbjct: 116 VTGYPASGSPATIQT----------------------------------GANPVALSIPT 141

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           ++  A        V     +  I   T   ++N          T++++   D   +    
Sbjct: 142 TQMSAKATTTATQVANLNSTSDIPSVTTFDSSNVDSYNAKSTMTVYDSQGNDHTLDMYYV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +      +D    +S     +       L                           
Sbjct: 202 KTGDNAWTVHAVDSTTGASAGDFDLTFDSSGNL--------------------------- 234

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 G       + ++    +                 Q     +F            
Sbjct: 235 ---TSVGGVTGATTVALSIDGTNGAAAGQSITLNMQGSLQQNTGTTTFGNPTQDGYAPGD 291

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A  +    L     N   W   + S    + 
Sbjct: 292 LTTYTINDDGTITGTYSNQQTQLLGQIVLASFSNPEGLQSEGDNV--WSATSSSGQAAIG 349

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 TAGTGTFGSLTAGALEASNVDLSQELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 405


>gi|332759635|gb|EGJ89940.1| flagellar hook protein flgE [Shigella flexneri 2747-71]
 gi|332767683|gb|EGJ97876.1| flagellar hook protein FlgE [Shigella flexneri 2930-71]
          Length = 402

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 104/476 (21%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N     
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +                +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++    +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGSNSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L T +  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 401


>gi|300693338|ref|YP_003749311.1| flagellar hook protein flge [Ralstonia solanacearum PSI07]
 gi|299075375|emb|CBJ34670.1| flagellar hook protein FlgE [Ralstonia solanacearum PSI07]
          Length = 401

 Score =  102 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 106/473 (22%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T      +      +  R  Q              ++   ++   T  N       A+  
Sbjct: 87  TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYGVDATGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  ++ +   +T    N D        T    T     N         
Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFTINLDAAATVPTTTPFSATNSATFNHSVSEQVYD 194

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +                              + +  V                      
Sbjct: 195 GT-------------------------GTSHMLTNYYVRTATGWDVYSQVDGANPTGGNP 229

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +    +   L  +     +        +       QY    +                
Sbjct: 230 VTSLTFNSSGTLTSSPSKVAVAFAGMSIANMDFTGTTQYGGGFNDTTVSQDGYATGRLAS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +        L     N   W+E   S S  +    
Sbjct: 290 YSVGTDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D++LQTL+  
Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLVSM 400


>gi|261341494|ref|ZP_05969352.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316]
 gi|288316290|gb|EFC55228.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316]
          Length = 395

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/474 (9%), Positives = 122/474 (25%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  N  ++Q  +I  NI N+    +                +     N     +
Sbjct: 2   SFDIAISGLNAINEQLGAISNNIANSGTVGFKSGRAEFASLYAEGQPLGVGVTN---VAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +  + +       L      +      D    +       ++                 
Sbjct: 59  SISKNGTVFASASSLDLAINGQGFFVMRDSSGTTAYTRAGYMQT---------------- 102

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                                 +  +    ++    +    +   TV N  I   +    
Sbjct: 103 -----------------DSNGNLVNNQGMYLQGYPVDANGVIQTGTVGNLTISSGSLPAK 145

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    ++     +E    +      ++     +  T +++++ R+   ++    T 
Sbjct: 146 ATSSLDFTANL---NANEEKPKTATFDPTDETSYNHTYATQVYDSLGREHTLKQYFVKTD 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +     +                        + D  +   ++       +L+      +
Sbjct: 203 DNTWQVHYY-----------------------MDDKSMGDAKDMTFNEQGILLKPNGAVN 239

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A                 +       +        Q+ S+ S  ++ G+         
Sbjct: 240 LTAA----------------IPGADSISLDLNYNGTTQFGSDFSVSKNNGNGYASGERTG 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           + +     +   + +          +A  +    L    +N   W +   S +  L    
Sbjct: 284 QTIDKDGSVYATFSNGERLLQGQVVLANFSNPNGLSS--QNGTTWTQTASSGAPLLGTPG 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +   ++ +      VNL +EL  L+  +++Y  + K+I   D M+  L + V
Sbjct: 342 TGLLGALTSNTLEGSNVNLTDELVGLMTAQRNYQANTKVISTNDSMMTALFQAV 395


>gi|30062613|ref|NP_836784.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T]
 gi|161485924|ref|NP_706995.2| flagellar hook protein FlgE [Shigella flexneri 2a str. 301]
 gi|30040859|gb|AAP16590.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T]
 gi|313650473|gb|EFS14880.1| flagellar hook protein flgE [Shigella flexneri 2a str. 2457T]
 gi|332758235|gb|EGJ88558.1| flagellar hook protein flgE [Shigella flexneri 4343-70]
 gi|333005591|gb|EGK25109.1| flagellar hook protein flgE [Shigella flexneri K-218]
          Length = 402

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 105/476 (22%), Gaps = 79/476 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N     
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +                +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPVTGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +  +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  ++        V+L +EL  +I  +++Y  + + I   D++L T +  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVNL 401


>gi|254457451|ref|ZP_05070879.1| flagellar hook-associated protein FlgK [Campylobacterales bacterium
           GD 1]
 gi|207086243|gb|EDZ63527.1| flagellar hook-associated protein FlgK [Campylobacterales bacterium
           GD 1]
          Length = 626

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/422 (11%), Positives = 125/422 (29%), Gaps = 16/422 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT 51
           S+    +   +  N A     +   NI NA+   Y R+  +T                  
Sbjct: 3   SIFNALHIGYSGLNVAQIGINTTGHNISNAEVDGYTRQRVITAAATPLQTYPGNVGNGAQ 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V+  +    N         S                      +         +++  +  
Sbjct: 63  VMDIKRVFDNFVFDRYTDISETKEYSDFETKTLEELSTYF-PEIDGVGIKADLTEYYNMW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ++++ N   D +   +    + + Q+   +  +V+ +++  + ++ + I+ +     +L 
Sbjct: 122 QTFADNPDNDAIKLALATQTKTLTQHIAYTQTQVKSLQSQLNDQLAVNINEVNSIAKQLA 181

Query: 172 VVNDAIKFKTASKH-DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +N +I+   A K   A+D  D+R+V+ + ++ +IG  T        +   S   T   +
Sbjct: 182 DLNKSIEIAEAGKTYTANDLRDKRNVMERSLARLIGAVTNAGQIESNIQVDSSSNTKTGS 241

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               +N     +    +  +PI++     S+       + +   L+QI + +       +
Sbjct: 242 YSVSVN---GFNIVDGNSFHPIYLSRENNSNGFYEVSYERQDGTLIQIAEKISGGVVGSI 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +    + + S           V  +                 S T  +      + + 
Sbjct: 299 LNLRGASLDTTSGMPTDGVVQNVVAQMDAFAKGLIESTNNVYANSATKRMESNKL-DLNP 357

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                + +         +  Y    N              + G+  + ++       I  
Sbjct: 358 TNSLVNSTLNVQTGSFEMIVYDIDGNVTTKREIVINQATTMTGVAGSNSIQGQIEAQIDD 417

Query: 411 LE 412
             
Sbjct: 418 NG 419



 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/425 (11%), Positives = 119/425 (28%), Gaps = 3/425 (0%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R+  +    +++ A ++A   +  +Q   +      +     N            +    
Sbjct: 205 RNVMERSLARLIGAVTNAGQIESNIQVDSSSNTKTGSYSVSVNGFNIVDGNSFHPIYLSR 264

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +N S      +       ++Q     +  V     +         S +        VV  
Sbjct: 265 ENNSNGFYEVSYERQDGTLIQIAEKISGGVVGSILNLRGASLDTTSGMPTDGVVQNVVAQ 324

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
              F        ++          + +++    T    N+ + V T     +   +  ++
Sbjct: 325 MDAFAKGLIESTNNVYANSATKRMESNKLDLNPTNSLVNSTLNVQTGSFEMIVYDIDGNV 384

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             ++       +    +     +    +      G   A   I + +   F         
Sbjct: 385 TTKREIVINQATTMTGVAGSNSIQGQIEAQIDDNGDGNANNDINNFI--QFNWATFAGGG 442

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +    +    +          + D      +     +  +   +     + S      
Sbjct: 443 NALELTLDPLAESRGYTFSMQDILKDTSYSSGSNFAGALGMSRYFDGDSAQSISLNYTLA 502

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +           +AG   +  +      + F F  V   + N T           +    
Sbjct: 503 NNPTLITPGATPVAGDNVVALNMVQHQYEKFDFY-VGNQDFNTTTYAMFDIIATEVGTQT 561

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +   +      +N     Y++   V+L EE++ LIK + SY  + K+I   D+M+QTL
Sbjct: 562 NAAILKNETITTQYNATELEYNSVSKVSLDEEMTNLIKYQTSYGAAAKIITTIDQMMQTL 621

Query: 476 LEGVK 480
           L   +
Sbjct: 622 LGIKQ 626


>gi|217077695|ref|YP_002335413.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B]
 gi|217037550|gb|ACJ76072.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B]
          Length = 704

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/456 (10%), Positives = 119/456 (26%), Gaps = 24/456 (5%)

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT----H 102
              V     +               + I Q     +F       S  D   +S +     
Sbjct: 251 GNVVQSGAIKQSLSATATTDGSLTLNNIQQDDGNYTFIIKDSNGSILDVQTSSVSSGNAT 310

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE--IELEI 160
             S+   +  +Y   ++ D++               + +A ++            I++ +
Sbjct: 311 ISSEKIVNGGNYIVEIANDVVDLQTPGYVLSTETPTSVAANQIDFTYNGTTTSSPIKVFV 370

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
            +    L     +N+     + S     +      + + +   +  +             
Sbjct: 371 RDGNGNLVGEYSLNNITNGTSYSLSGVFNPSGTYTIEVVREDTVNSVVVPGSGEPRFYEA 430

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            +                 +  Y     +  ++ID V +S+N        K     ++R+
Sbjct: 431 DNPTNFAVSEFNSPFYTTSVQVYDTLGNAYTLYIDFVKLSANYYDGTDTFKNAWAFRVRN 490

Query: 281 ----------------SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                            +       +              DP  G       +       
Sbjct: 491 ASGENIKYLSNYETGQEITSGTAGVMTFDESGRFTGIYAFDPSTGKVNRGESIDAIKFDA 550

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             +      I   +    Q+ +         + + +      ++A   D+I  + +    
Sbjct: 551 GENGDGEVKIKLNLTGITQFAATSDAYVTEQNGNAQGTLESFSIAENGDIIGTFSNGLTD 610

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A  N    LLE   +     E   S    +          +         V+L
Sbjct: 611 KLGKVALAIFNNPAGLLEAGNSLYT--ESANSGGAIIRQPGFGGSGSLISGALEMSNVDL 668

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE + LI  ++ +  + +++   D++LQ ++   +
Sbjct: 669 SEEFTKLIIAQRGFQANARVVTTADQILQEVVNLRR 704



 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/443 (10%), Positives = 105/443 (23%), Gaps = 34/443 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           ++              Q    +  NI N     +         +   V            
Sbjct: 1   MIRSIYSGVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTG 60

Query: 51  --------TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                     V   S +K M                    F  LK+              
Sbjct: 61  GTNPKQIGYGVKVASIDKIMSQGSFQNTGKKTDLAIQGDGFFILKD------GSGKIYYT 114

Query: 103 YISKLRDSLES-YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                   +     +  S   L   V +   E  + F  + + +  I+  A   +  + +
Sbjct: 115 RAGNFDLDVNGTLVQASSGLKLQGWVAEPDPESGKRFVDTNKPISDIQISAGLSMAAKKT 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
           +     + L       K          + +D + +  ++   +    +  +     V   
Sbjct: 175 SYMTVANNLDARVGPSKTVMTLSGYGGNSVDVKILFDRESGALQEPFSDYQIYRAKVYSG 234

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           SD +   E   +   F  +       +S           +        G    +++  + 
Sbjct: 235 SDDSVDGEIYIKFDKFGNVVQSGAIKQSLSATATTDGSLTLNNIQQDDGNYTFIIKDSNG 294

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +   Q     ++       SEK    GN        + D          +  +      
Sbjct: 295 SILDVQTS--SVSSGNATISSEKIVNGGNYIVEIANDVVDLQTPGYVLSTETPTSVAANQ 352

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
             +  N +       V  +   N   +  Y         S++ + +F+P    +   T+ 
Sbjct: 353 IDFTYNGTTTSSPIKVFVR-DGNGNLVGEYSLNNITNGTSYSLSGVFNP----SGTYTIE 407

Query: 402 EYARNSIGWLEKNRSDSHDLHMK 424
               +++  +    S     +  
Sbjct: 408 VVREDTVNSVVVPGSGEPRFYEA 430


>gi|300696913|ref|YP_003747574.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957]
 gi|299073637|emb|CBJ53157.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957]
          Length = 401

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/473 (12%), Positives = 113/473 (23%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T      +      +  R  Q              ++   ++   T  N       A+  
Sbjct: 87  TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYAADATGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  ++ +   +T    N D             TVP    F   +S T 
Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFSINLDAA----------GTVPTTTPFSATDSSTY 184

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +    DG   S    +   +      +                             
Sbjct: 185 NHSVSEQVYDGTGTSHMLTNYYVRTASGWDVYSTVDGAAPTGGNPV-------------- 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +    +   L  +     +        +       QY    +                
Sbjct: 231 -TSLTFNSSGVLTSSPSTVAVAFTGMSIANMDFTGTTQYGGGFNDTSVTQDGYATGRLAS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +        L     N   W+E   S S  +    
Sbjct: 290 YSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D++LQTL+  
Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLVSM 400


>gi|218700421|ref|YP_002408050.1| flagellar hook protein FlgE [Escherichia coli IAI39]
 gi|218370407|emb|CAR18214.1| flagellar hook protein [Escherichia coli IAI39]
          Length = 400

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/473 (11%), Positives = 115/473 (24%), Gaps = 75/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        + +N           N  +  KT +  
Sbjct: 97  NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L+  D L    +           +N          T+F++     +       T 
Sbjct: 153 SMQINLNSSDPLPSVKA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +   +D    +     A                       L   A  ++ S   KD
Sbjct: 205 DNNWDVYTLDSSDPTGTANPATT---------------------LVFNANGVLTSDPTKD 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 244 ITTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +  +   +A    N  L     N   W     S    L    
Sbjct: 290 YQINDDGTVVGNYSNEQTQ-LLGIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 346

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 347 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 399


>gi|170735956|ref|YP_001777216.1| flagellar basal body FlaE domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818144|gb|ACA92726.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 414

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   + +          N    +  +       +    
Sbjct: 6   GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            +     I   +                    +                 +     L   
Sbjct: 66  QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +                +  + + L+           + +          K  
Sbjct: 126 AAGAGGVI----------------NTAQTVPLQAPTSNIAPRATSKITGQFNLNAQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A    +  D      +  I +   +  +  + +Y +            +           
Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKNAAGTWQAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                        +    +    G++ +              Q                 
Sbjct: 220 --------GQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQF---------------- 255

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    QY                      
Sbjct: 256 ------------AFSIPNTTGGANPQNLTLDLGGTTQYGGKDGVNNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +  +       +A  N    L+    N     E   S    +     
Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      VNL  EL  LI  +++Y  + + I     + QTLL  
Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLNL 413


>gi|107026757|ref|YP_624268.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054]
 gi|116692051|ref|YP_837584.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424]
 gi|105896131|gb|ABF79295.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054]
 gi|116650051|gb|ABK10691.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 414

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   + +          N    +  +       +    
Sbjct: 6   GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            +     I   +                    +                 +     L   
Sbjct: 66  QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +                +  + + L+           + +          K  
Sbjct: 126 AAGAGGMI----------------NTAQTVPLQAPTSNIAPRATSKITGQFNLNAQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A    +  D      +  I +   +  +  + +Y +            +           
Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKNAAGTWQAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                        +    +    G++ +              Q                 
Sbjct: 220 --------GQTPTNLGTVTFDASGRLSSTTSAATGQPTPSLGQF---------------- 255

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    QY                      
Sbjct: 256 ------------AFSIPNTTGGANPQNLTLDLGGTTQYGGKDGVNNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +  +       +A  N    L+    N     E   S    +     
Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      VNL  EL  LI  +++Y  + + I     + QTLL  
Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLNL 413


>gi|284989548|ref|YP_003408102.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM
           43160]
 gi|284062793|gb|ADB73731.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM
           43160]
          Length = 408

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 116/478 (24%), Gaps = 70/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L   N A +       +      NI                 +   V     ++  ++ 
Sbjct: 1   MLRSMNSAISGLRAHQTKLDVTGNNIA----------------NVNTVGYKASQTVFEDT 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +V+   S+   Q                                        N ++  
Sbjct: 45  LSQVVRNGSAPTAQAG------------------------------------GTNPAQVG 68

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           LG  V        Q    +           D     +  N + +    +   D       
Sbjct: 69  LGVKVAGITTNFEQGSAQNTGRSTDFMISGDGFFITQAGNEQLYTRAGSFSYDGAGNLVT 128

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                       D ++     I  ++    +            T    V  +++    N 
Sbjct: 129 PDGALLQGWMATDGVVNTNGPIRQLTVPFGDVMQPT------ETDNGAVVGNLSSAAANG 182

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V ++       G     +                 D+   +     +E          
Sbjct: 183 TGVQTQMTMYDALGKAHQISLSFTKTG----------DNTWNVVARDENEAVLASTAGPL 232

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +P+AG        F       +       ++  +    Q+             +    
Sbjct: 233 AFNPVAGTLPAASRTFQITPDASMAGSWPGQVTIDLADLRQFGGPSGLTPARVDGNAMGS 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               +L+G   ++  Y ++  +      +A       L +   +   +   + S    + 
Sbjct: 293 LQSISLSGDGTVMGVYSNNLREPIGKLALATFANPGGLAKAGNS--SFRVGDNSGQPAIG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    +         V+L EE + LI  ++ +  ++++I  +D++LQ L+   +
Sbjct: 351 EPGGGGRGSLVAGALEMSNVDLAEEFTGLIVAQRGFQANSRVISSSDEVLQDLVNLKR 408


>gi|313610113|gb|EFR85437.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           F2-208]
          Length = 389

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 110/341 (32%), Gaps = 26/341 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPE 48
           M L   FN + +  + A        +NI N +   Y+R+    T             +  
Sbjct: 1   MRLSD-FNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V   +           +   +                 +      N  P+  +    
Sbjct: 60  GVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +  + +KN  +      ++ +        N     ++++      + +  I +L   + 
Sbjct: 119 TAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDTAIQDLNSLIK 178

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +L  +N AI    A  +  +D L++RD LL  ++   GIS     NN  V   + G  L 
Sbjct: 179 KLGSINKAI--GNAGSNPPNDLLNKRDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLV 236

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                          T T+      +DG  ++      +P+G I A +++  + +  +Q 
Sbjct: 237 VQGDETTEITS----TRTATGFEFSVDGQKLN------MPEGSIIASVRVNQNEIKSYQE 286

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           +++     L  +  +      N        I D ++   N 
Sbjct: 287 KIETXXNGLAKALDDIQVKNVNKTMDDLQKINDALQANPND 327


>gi|149202208|ref|ZP_01879181.1| flagellar hook protein FlgE [Roseovarius sp. TM1035]
 gi|149144306|gb|EDM32337.1| flagellar hook protein FlgE [Roseovarius sp. TM1035]
          Length = 419

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/483 (11%), Positives = 107/483 (22%), Gaps = 77/483 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F+ A +  N A    +    NI N     +                        +    
Sbjct: 2   SFHTALSGLNAAQTDISVTSNNIANVGTLGFHGSRAEFADIYTTSPYSRPASQIGSGTEV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     L A  + +        F  ++   +  D   ++          + E + 
Sbjct: 62  SRIGVDFKQGSLTATGNVLDLSLQGPGFFQVR---TGPDAGADAGYTRAGAFGMNREGFV 118

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +   L  TV   +E       T  + +Q  +     +    +             N 
Sbjct: 119 TNAAGHFL--TVFPTSENGDTLSTTQTQRLQIPQQFGTPQATTAVD---------LSFNL 167

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           ++         A       D                                        
Sbjct: 168 SLSNNGGLGAQAAIPAAAFD----------------------------------PADPTT 193

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                    + +    +      V S+   A+  G    +  + D V+    + L  ++ 
Sbjct: 194 YAATTQIPVLDAAGRAVPAQAYFVMSDAPDALDGGLAYTVQLVVDGVITAPTDPLATLSF 253

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                        G           D  +   +    G   +         + +  R   
Sbjct: 254 D----------AGGAQTGGLEAMNFDFGEQALSLSLGGSRVSEGPFGAIAVSQNGTRQLD 303

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             S     +    A Y           +       VA  +    L         +     
Sbjct: 304 LSSVDVRQDGTVWASYGAET-------SVAVGQVAVANFSDIQGLGSIGSA--TYRASRE 354

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    L +     F  I         V+L E+L  LI  +++Y  S K +     +  T+
Sbjct: 355 SGDVRLGVPGTSGFGAIRAGSVERSNVDLTEQLVNLIMAQRNYQASAKALETNGTLADTV 414

Query: 476 LEG 478
           L  
Sbjct: 415 LNI 417


>gi|187925761|ref|YP_001897403.1| hypothetical protein Bphyt_3791 [Burkholderia phytofirmans PsJN]
 gi|187716955|gb|ACD18179.1| protein of unknown function DUF1078 domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 503

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/489 (8%), Positives = 101/489 (20%), Gaps = 33/489 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70
              I  NI NA+   +            N                    +      + + 
Sbjct: 17  LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLAEVQQQFSQGTITST 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-----------SKNLS 119
           + A+        F  L    S     N       +    + +               N +
Sbjct: 77  NQALDVAINGNGFFQLSNNGSMVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           + +       N          +   +            +  + +                
Sbjct: 137 QTVPLTVPTANIAPQATTKIVAGLNLNAQDPLMLGTPTVTPALVAGSTLTTPGATITNTA 196

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +  +               + +   +          +   +G T+            
Sbjct: 197 SGTNNDNYTVNFTSPTTYTVTDTTLGTTTAPATYTAGTAISLGNGQTITLNGTPATGDSV 256

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQ 289
             + T  + +          +S        G                 +           
Sbjct: 257 AIAPTPVAFNQNSSSTYDYSTSTTVYDSLGGSQTVNMYFAKTAAGAWNVYAGTSTGTAQL 316

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +        G+       AG +   P  +         +   Q ++  I    QY     
Sbjct: 317 IGHANFNSSGTLLSTTDAAGVATTTPFAYNFSIPTTDGSSTPQQLTLNIAGTTQYGGKDG 376

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                    +        +     L  +Y +          +A  +    L+    N   
Sbjct: 377 VNSLQPDGYEAGTLTSFTIGADGTLTGNYSNRQTAALGQIALANFSNQNGLVNLGNN--E 434

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + + + S    +          +         V+L  EL  LI  +++Y  + + I    
Sbjct: 435 FQQTSASGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQ 494

Query: 470 KMLQTLLEG 478
            + QTL+  
Sbjct: 495 TVDQTLINL 503


>gi|150021173|ref|YP_001306527.1| hypothetical protein Tmel_1293 [Thermosipho melanesiensis BI429]
 gi|149793694|gb|ABR31142.1| protein of unknown function DUF1078 domain protein [Thermosipho
           melanesiensis BI429]
          Length = 705

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/368 (9%), Positives = 89/368 (24%), Gaps = 4/368 (1%)

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   S  ++  + +D         + +   V+    +   + +            LT + 
Sbjct: 340 ASTESGTVVSASQLDFTYNGSDITSNAKVFVRDSNGNLVAQYDFTSGLTNGTSYSLTGIF 399

Query: 175 D--AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           D               + L        +  E    +       +   YT+          
Sbjct: 400 DPAESYTVEVYNGATINSLVVPGSGEPRFYEADNPTNFAVTEFNSPFYTTSVQVYDTLGN 459

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               +                         + +     K          +       +  
Sbjct: 460 AYTLYIDFVKLAANYNDGSADYKNAWAFRVRNATGENIKYLTNYDTGQEITSGTAGVMTF 519

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                       DP  G       +         +      I  ++    Q+ +      
Sbjct: 520 DESGRFTGLYAFDPTTGQINRGESIDAIKFDAAENGDGEVKIKLSLTGITQFAATSDAYV 579

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              + + +      ++A   D+I  + +          +A  N    LLE   +      
Sbjct: 580 VNQNGNAQGTLESFSIAENGDIIGTFSNGLTDKLGKVALAIFNNPAGLLEAGNSLYTK-- 637

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S S  +          +         V+L EE + LI  ++ +  + +++   D++L
Sbjct: 638 SANSGSAIIRQPGFGGAGALISGALEMSNVDLSEEFTKLIIAQRGFQANARVVTTADQIL 697

Query: 473 QTLLEGVK 480
           Q ++   +
Sbjct: 698 QEVVNLRR 705



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/430 (8%), Positives = 87/430 (20%), Gaps = 41/430 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           ++              Q    +  NI N     +         +   V            
Sbjct: 1   MIRSIYSGVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTG 60

Query: 51  --------TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                     V   S +K M                    F  L++ +        +   
Sbjct: 61  GTNPKQIGYGVKVASIDKIMSQGSFQNTGKKTDLAIRGDGFFILRDGV------GKTYYT 114

Query: 103 YISKLRDSLESYSKNL-SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI----E 157
                   +        S   L   V +   E  + F  + + +  I+  A   +     
Sbjct: 115 RAGNFDLDVNGTIIQPTSGLKLQGWVAEPDPESGKRFVDTNKPISDIQISAGLSMAAKKT 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH----------DAHDFLDQRDVLLQKISEIIGI 207
             ++      + +      I       +          D     D         +++   
Sbjct: 175 TSMTVANNLDARVGPGKTVITLSGYGGNSVNVKIIYDRDKGGLQDPFSDYQIYRAKVYSG 234

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           +    +    + Y   G  +     +        +    S +     DG      + ++ 
Sbjct: 235 TDDNIDGEIYIKYDKFGNVVQSGAIKQQLSVTATTDGSLSLTGIGQEDGNYTFIIRDTSG 294

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
               ++       +V        +    V+  +    D                    LD
Sbjct: 295 KILDVQTGSVSSGNVTVSSDQIKNGNNYVIEVAKDVVDLATPGFIASTESGTVVSASQLD 354

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                    +        SN + +      S        +L G  D    Y         
Sbjct: 355 FTYNGSDITSNAKVFVRDSNGNLVAQYDFTSGLTNGTSYSLTGIFDPAESYTVEVYNGAT 414

Query: 388 FDPVAGINTN 397
            + +    + 
Sbjct: 415 INSLVVPGSG 424


>gi|206562843|ref|YP_002233606.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315]
 gi|198038883|emb|CAR54845.1| flagellar hook protein 2 FlgE2 [Burkholderia cenocepacia J2315]
          Length = 414

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/472 (9%), Positives = 94/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   + +          N    +  +       +    
Sbjct: 6   GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            +     I   +                    +                 +     L   
Sbjct: 66  QNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +                +  + + L+           + +          K  
Sbjct: 126 AAGAGGVI----------------NTAQTVPLQAPTNNIAPRATSKITGQFNLNAQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A    +  D      +  I +   +  +  + +Y +            +           
Sbjct: 170 AKTPFNATDNTTYNYNSSIQVYDTLGGSQQVTMYFAKSAAGTWLAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                        +    +    G+I +              Q         G  + ++ 
Sbjct: 220 --------GQTPTNLGTVTFDASGRISSTTSAATGQPTPSLGQFAFSIPNTTGGANPQNL 271

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 272 T----------------------------LDLGGTTQYGGKDGVTNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +  +       +A  N    L+    N     E   S    +     
Sbjct: 304 SIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYA--ETAASGVPQIAAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      VNL  EL  LI  +++Y  + + I     + QTLL  
Sbjct: 362 TNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLNL 413


>gi|50120639|ref|YP_049806.1| flagellar hook protein FlgE [Pectobacterium atrosepticum SCRI1043]
 gi|49611165|emb|CAG74611.1| flagellar hook protein [Pectobacterium atrosepticum SCRI1043]
          Length = 405

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 120/476 (25%), Gaps = 76/476 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +   +           V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGNVTFADMFAGSKVGMGVKVASVLQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  + + S  +        F  L+      D   ++      +                
Sbjct: 62  GNGTVTSSSRDLDIAISGGGFYRLQ------DTNGSTYYSRNGQFM-------------- 101

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    I NA+ +       A     ++  AD  + L + +     S+ +V +     K++
Sbjct: 102 LNGRNIVNAQGMQLTGYPVAGTPPTVQTGADP-VPLTVPDGDMLASQTSVASIKANLKSS 160

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                + +           S+    +   + N          T          +     +
Sbjct: 161 DSVPTNAWATTPGAEGTYNSKTALTTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSINPA 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +     +G + S+                                         
Sbjct: 221 TYQNAGTLNFEANGALSSTGAT-------------------------------------- 242

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                               +   +       +  +  + Q  +  S+     +      
Sbjct: 243 ------------AHTPFTLNLTGTNGAANGTFTLNLTGSVQQNTEYSYKSPTQNGFAPGS 290

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A       L     N   W E   S    + 
Sbjct: 291 LTGFAINDDGTIEGSYSNGQKQALGQILLASFANPEGLSPEGDN--AWSETASSGQAVVG 348

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        +    + +  V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 349 LAGTGSLGKLIGKSTESSNVDLSKELVSMIVAQRNYQSNAQTIKTQDSILQTLVSL 404


>gi|220922287|ref|YP_002497589.1| flagellar basal body FlaE domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219946894|gb|ACL57286.1| flagellar basal body FlaE domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 456

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/491 (9%), Positives = 115/491 (23%), Gaps = 46/491 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +    A +     +    +I  NI NA    Y R DT          V +Q S + 
Sbjct: 1   MDVFSALQTAVSGLKAQAFSLDNISGNIANAQTTGYRRIDTTFVDLLAEQPVKSQTSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-----------DHYNNSPTHYISKLRD 109
             + ++ +     +    +  +     +                   + +          
Sbjct: 61  AAYSQLTNTLQGNLTSTGIGTNMALNGDGFFVVRIPGTDTAGQRSFSSENLYTRRGDFTV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +   L    +D                Q + A A   +    +      S 
Sbjct: 121 DKDGFLVNGAGSYLVGQSLDPLTGQTTGDGVIKISNQVLPAKATTALSYAAN----LPST 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            T    A+                        ++  G  +   +   +  Y+S G+ +  
Sbjct: 177 PTTTGSALLAALPGGDVRVLSGTASTPASVAAADTDGFLSSSISGGSLTAYSSTGSPVNL 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +         ++   +   N  +      +S   +    G             P     
Sbjct: 237 QLRWAKVASADSTAGTSDTWNLFYAAQNGTTSASSTWKNVGTAFTFNASGQLTAPT---- 292

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                                   +    +      L        S  +          +
Sbjct: 293 ---------------------GGTLAIPNVTVDGTSLGTLTLDTGSGGLTQYGAANGQVT 331

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     +   Y +  +       V   N    L   A +   
Sbjct: 332 TNTLQQNGYASGTLTALAVTSDGKITGTYSNGNDLALAQVGVVRFNAPDALR--AESLGN 389

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +     S    + +K   V              +   E S LI  +Q+Y+ + +++    
Sbjct: 390 YARTADSGEPLIGLKGATVVG----GNVEQSNTDTANEFSKLIITQQAYSANTRVMSTAQ 445

Query: 470 KMLQTLLEGVK 480
           +M+  L+  ++
Sbjct: 446 QMMTDLINIIR 456


>gi|161526186|ref|YP_001581198.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616]
 gi|189349098|ref|YP_001944726.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616]
 gi|160343615|gb|ABX16701.1| flagellar basal body FlaE domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189333120|dbj|BAG42190.1| flagellar hook protein [Burkholderia multivorans ATCC 17616]
          Length = 414

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/472 (10%), Positives = 94/472 (19%), Gaps = 66/472 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +            +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T +       +     
Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNIYFVKSAAGTWEAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                    G             G I    +    V P                      
Sbjct: 220 --------GGKTNDLGTIQFDSSGAISGTTKAGTPVTP---------------------- 249

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                    G F         +   Q ++  +    QY                      
Sbjct: 250 -----TEALGQFQFTVPNTDGSATPQTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLATF 304

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     +  +Y +          +A  N    L+    N     E   S    + +   
Sbjct: 305 TIGTDGKVTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYA--ETAASGVPQISVPGS 362

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 363 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 414


>gi|171321838|ref|ZP_02910739.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171092876|gb|EDT38128.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 413

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/472 (9%), Positives = 98/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D    V                +  + + L+        +  T +       +  K  
Sbjct: 126 LSDKNGVV----------------NTAQTVPLQAPTTNISPTATTKITGQFNLNSQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  + +   +  +  + +Y              +           
Sbjct: 170 TKAPFDATDTSTYNYSTSVQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGATTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +  +   I      +        G+ +  +   D                          
Sbjct: 230 TFDSSGAIKTTTTGTPAVPTASVGQFQFTVPTTDGSTTP--------------------- 268

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    QY           +          
Sbjct: 269 -------------------------QPLTLDLTGTTQYGGKDGVNNLAQNGYASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E   S    +     
Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVNLGGNQYA--ETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|325529014|gb|EGD06027.1| flagellar hook protein FlgE [Burkholderia sp. TJI49]
          Length = 413

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                 AI                    +            +     Y  N     L   
Sbjct: 66  QQFGQGAINATSSSLDVAINGNGFFQMSNNGAMTYTRDGTFQRDKNGYIVNAQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T +       +     
Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDALP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  I +   +  +  + +Y     T  +            +   T
Sbjct: 170 TKTQFDPTDNTTYNYSTSIQVYDSLGGSQPVNMYFVKSATSGQWEAYAGVQGGSTTDLGT 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
              +        V+ +  +    G+    +   D         L                
Sbjct: 230 VTFDSTGAIQSTVAPDGTATKSLGQFTFTIDNNDGSGTPQSLTL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     +  +Y +          +A  N    L+    N   ++E   S    +     
Sbjct: 304 TIGNDGKVTGNYSNGQTATLGQIALANFNNPNGLVNIGGNQ--YVETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|254496887|ref|ZP_05109735.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12]
 gi|254353906|gb|EET12593.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12]
          Length = 437

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/476 (10%), Positives = 109/476 (22%), Gaps = 44/476 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---ISPENVTVVTQRSENKNM 62
           +F+   +    AS     I  NI N+    +                 +  T       +
Sbjct: 2   IFDTGISGLQAASNNLDVIGNNIANSSTVGFKGSRANFGDIYSFGGYGSSGTTPGGGVML 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   S  +                   ++   +      +   + ++Y  N S   
Sbjct: 62  TSIQQSFASGTMTSTNNTLDLAISGNGFFILNNQGATSYSRAGQFTLNNDNYITNSSGQF 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   + D A  +                                  ++ + N + K  T 
Sbjct: 122 LTGYLADAAGNITGASGNI---------------------------QVNMANLSPKATTL 154

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                +     +            ++    N   M +Y S G +   ++   +      +
Sbjct: 155 VSTGLNLNSQSKPPAADWSGGAAPVTDTYNNTTSMTIYDSLGNSHVLSMYFIMADSTATA 214

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + S     +   V+    +                 +    N  +  A       +
Sbjct: 215 GQPDAASPVGQTNQWYVAFQIDNQDVP------------SIVTPGNSSNLFAANFNSDGT 262

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                      +P   I       +      +S  +    Q+ S  +      S      
Sbjct: 263 FTSVQDTTGTAIPTNLIPLSYTLTNGANPLSLSIDLSSCTQFGSPFAVQSANASGYTTGS 322

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +          +A       L       + W     S    + 
Sbjct: 323 LAGLQVDAAGVISGSYSNGQTLAMGQIQLANFADLNGLQNIGN--VCWTATATSGQALIG 380

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 F  +         V++  EL  LI  ++ +  + + I   D + QT++  
Sbjct: 381 TGGTGSFGTLLSGRLEESNVDITSELVDLIGAQRDFQANAQTIRAGDTITQTIINI 436


>gi|170751911|ref|YP_001758171.1| hypothetical protein Mrad2831_5543 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658433|gb|ACB27488.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 461

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/491 (9%), Positives = 116/491 (23%), Gaps = 41/491 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVV 53
           M L +    + +   + S   ++I  NI N+    Y R DT                  V
Sbjct: 1   MDLFSALQTSVSGLQSQSYAISNISGNIANSQTTGYKRIDTSFVDLMSEKTPDREIAGSV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK----EMMSADDHYNNSPTHYISKLRD 109
             +S+  N     + + S         Q F  +     +   A                 
Sbjct: 61  LAKSQLTNTLAGNIVSSSVPTNMAINGQGFFTVVQKTGDANGATTFGGTDLYTRRGDFAQ 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L  + +D       +          + A A   I             
Sbjct: 121 DKDGYLVNGAGGYLTGSNLDPITGQTTSIGPIKIGNATLPAQATTTITYA---------- 170

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              +        ++   +  +      ++   S   G+         +  + S+      
Sbjct: 171 -ANLPSTPSTSASATSGSDLYNQNTAAVVTSGSGKTGVKVDSTQTGAVSTFMSNSIAGPS 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                     +   T  ++           +             +     +       + 
Sbjct: 230 LPVYTSTGAPLTLTTRWAKVQDATTTPAQPAVWNLYYSTNPSALSTSDWNNVGTAFTFDS 289

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             ++              + ++  +    +  G     +      S  +          +
Sbjct: 290 TGKL-------------TSPSTNPIALGPVTMGDYTFPSLTMNLGSSGLTQYADTTGAAT 336

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 + +         +     +   + +          V        L         
Sbjct: 337 TNALTQNGNSSGTLTSVAVGPDGKVNGTFSNGSVVALASVGVVQFANADGLKADTNG--N 394

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +L+   S      +        IS + +     ++  E S +I  +Q+Y+ + +++    
Sbjct: 395 YLQTVDSGPPLSGLNGS----TISGASNEQSNTDIASEFSKMIVTQQAYSANTRVMSTAQ 450

Query: 470 KMLQTLLEGVK 480
            M+  LL  ++
Sbjct: 451 TMMSDLLNVIR 461


>gi|296157456|ref|ZP_06840291.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1]
 gi|295892228|gb|EFG72011.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1]
          Length = 503

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/489 (8%), Positives = 101/489 (20%), Gaps = 33/489 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70
              I  NI NA+   +            N       +            +      + + 
Sbjct: 17  LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQFSQGTITST 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-----------SKNLS 119
           + A+        F  L    S     N       +    + +               N +
Sbjct: 77  NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           + +       N          +   +            +  + +                
Sbjct: 137 QTVPLTVPTANIAPQATTKIVAGLNLNAQDPLMLGTPAVTPTLVTGSTLTTPGATITNTA 196

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +                  + +   S          +   +G T+            
Sbjct: 197 SGTNNDSYTVNFTTPTTYTVTDTTLGTTSAAATYTAGTAISLGNGQTITFNGTPATGDSV 256

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQ 289
             + T  + +          +S        G                 +           
Sbjct: 257 AIAPTPVAFNQNSSSTYNYSTSTTVYDSLGGSQTVNMYFAKTSAGTWNVYAGTSTGTAQL 316

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +        G+       AG +   P  +         +   Q ++  I    QY     
Sbjct: 317 IGHANFNSSGTLLGTTDAAGTATTTPFAYNFQIPTTDGSSTPQNLTLNIAGTTQYGGKDG 376

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     L  +Y +          +A  +    L+    N   
Sbjct: 377 VNSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--E 434

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + + ++S    +          +         V+L  EL  LI  +++Y  + + I    
Sbjct: 435 FQQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQ 494

Query: 470 KMLQTLLEG 478
            + QTL+  
Sbjct: 495 TVDQTLINL 503


>gi|254251191|ref|ZP_04944509.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158]
 gi|124893800|gb|EAY67680.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158]
          Length = 413

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/472 (9%), Positives = 95/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASSALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +            +     Y  N     L   
Sbjct: 66  QQFAQGTINTTNSSLDVAINGNGFFQMSNNGVITYTRDGTFQRDKNGYIVNSQGMNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +                +  + + L+        +  T +       +  K  
Sbjct: 126 AAGANGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFDPTDNTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGTATDLGTI 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +      I G  +  +       G+ +  +   D         L                
Sbjct: 230 TFDTSGAISGTTLPGSTTPTTTLGQFQFTVPNTDGSATPQSLTL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY           +          
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQNGYASGTLTTY 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     L  +Y +          +A  N    L+    N   ++E   S    +     
Sbjct: 304 TIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVAIGGNQ--FVETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|293409442|ref|ZP_06653018.1| flgE [Escherichia coli B354]
 gi|291469910|gb|EFF12394.1| flgE [Escherichia coli B354]
          Length = 401

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/473 (10%), Positives = 111/473 (23%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N A+     I  NI N+    +               V             
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L      + +  +     N      ++  ++       +       +
Sbjct: 50  -------------LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +E     N    ++    A        + +N           N  +  KT +  
Sbjct: 97  NGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIP----NTLMAAKTTTTA 152

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L+  D L    +           +N          T+F++     +       T 
Sbjct: 153 SMQINLNSSDPLPSVNA--------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTG 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +       D    +                      +      L   A  ++ S    +
Sbjct: 205 DNNWQVYTQDSSDPN---------------------SIAKTATTLVFNANGVLTSDPTAN 243

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              G                            +    Q     + +    +  K      
Sbjct: 244 ISTGAING--------------ADPATFSLSFLNSMQQNTGANNIVATTQNGYKPGDLVS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     ++ +Y +   +      +A    N  L     N   W     S    L    
Sbjct: 290 YQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLGTAG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 348 TGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 400


>gi|4928060|gb|AAD33398.1|AF129422_1 flagellar hook protein FlgE [Sinorhizobium meliloti]
          Length = 396

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/474 (9%), Positives = 109/474 (22%), Gaps = 78/474 (16%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
                +  N  S + +++  NI NA+   Y R  T  +                      
Sbjct: 1   MRTGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSS--------------------- 39

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           +   S            E    +         +    ++              ++ L + 
Sbjct: 40  MILPSGNGSYNSGGVQTEVRYSISQQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRA 99

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                +      N S   +     +A  +  + ++            +  I   +     
Sbjct: 100 GSFVPDSEGNLVNASGFTLMGYEYEAGVDPTVVVNGFDGLTRVNLASDGLIATGSTKGSM 159

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
             +                G +    +   +VVY S G T       +       S  V 
Sbjct: 160 GANLP-------------SGAAVGDVSTTSLVVYDSQGNTRILDFNYEKTGANAWSVEVV 206

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
             ++   +    ++ N   +                                        
Sbjct: 207 DRTSSTVLGTQTLNFNADGS---------------------------------------- 226

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
               +        A             ++  +    Q     +        +        
Sbjct: 227 --LTATPATLTTSAMTALPGTGANLSALTIDLTKTTQLGYAFNADGGNIDGNAPSKVAGY 284

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     +   Y +          +A + +   L   + N         S          
Sbjct: 285 QIDSDGIVYVKYENGKLDPRYRIALANVQSPDKLKPESGNVYSQ--GVDSGVIITGFAGS 342

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             F  I      +  V++ EEL+ +I+ +++Y  ++K+     ++L+ L+   +
Sbjct: 343 GDFGEILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLKR 396


>gi|323527713|ref|YP_004229866.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001]
 gi|323384715|gb|ADX56806.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001]
          Length = 502

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/488 (10%), Positives = 107/488 (21%), Gaps = 32/488 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70
              I  NI NA+   +            N                    +      + + 
Sbjct: 17  LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEVQQQFSQGTITST 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS----KNLSEDILGKT 126
           + A+        F  L    S     N       +    + +          S  I+   
Sbjct: 77  NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                     N    A        + + +  L +       S            T +   
Sbjct: 137 QTVPLSVPTANIAPKATTNISAGLNLNAQDPLMLGTPSVTASASNTGTLTSPGATITNTA 196

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           +    D   V     +      T +  +           +L        N       + T
Sbjct: 197 SGTNKDNYTVTFTSATAYTVTDTTLGTSTTGTYTAGSPISLGNGQTVTFNGVPGTGDSYT 256

Query: 247 SESNPIFIDGVVV----------------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               P+  +                     S   +            +   V     + +
Sbjct: 257 IAPTPVAFNQNSSSTYNYSTSTTVYDSLGGSQTVNMYFAKTSAGTWDVYAGVSTGTASLV 316

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                   G+       AG +   P +F         +   Q ++  I    QY      
Sbjct: 317 GHANFNSSGTLLGTTDAAGTATTTPYVFNFSVPTTDGSSTPQALTLNISGTTQYGGKNGV 376

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                            +     L  +Y +          +A  +    L+    N   +
Sbjct: 377 NSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--EF 434

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            + ++S    +          +         V+L  EL  LI  +++Y  + + I     
Sbjct: 435 QQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQT 494

Query: 471 MLQTLLEG 478
           + QTL+  
Sbjct: 495 VDQTLINL 502


>gi|291520179|emb|CBK75400.1| Flagellar hook-associated protein [Butyrivibrio fibrisolvens 16/4]
          Length = 199

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 16/188 (8%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SPE 48
                   +   +AS    +   N+ N + + YVR   +                     
Sbjct: 5   FGSLYVGASGLQSASHGLNTTANNLSNINTEGYVREQVVYEDRNYQKIGTAAISTQYRGL 64

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V V T         DK   + +                 +    +    +    I   +
Sbjct: 65  GVQVGTIVHARDIFLDKAYRSENGRHSFYDASSEAVQEV-ITHLQESDGKAFEEAIENFQ 123

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++ E ++K+ S+ +    V+  A   ++      +  +  +   + +I  ++  +     
Sbjct: 124 EAFEEFAKDPSDTVNQNLVLQKASLFLERTKAVEQGFEDYQTIINSKINEKLERINEIGK 183

Query: 169 ELTVVNDA 176
           E+  +N  
Sbjct: 184 EMVELNKR 191


>gi|107023946|ref|YP_622273.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia AU
           1054]
 gi|116691033|ref|YP_836656.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           HI2424]
 gi|170734367|ref|YP_001766314.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           MC0-3]
 gi|105894135|gb|ABF77300.1| Flagellar hook-associated protein [Burkholderia cenocepacia AU
           1054]
 gi|116649122|gb|ABK09763.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           HI2424]
 gi|169817609|gb|ACA92192.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           MC0-3]
          Length = 643

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/440 (11%), Positives = 133/440 (30%), Gaps = 21/440 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
            ++ N   +  N A     +  +NI NA    Y     +              P+ V  V
Sbjct: 3   NSLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGVNTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +        L+   +  G      S                  +  I+     +++
Sbjct: 63  TVQRQYSQYLSDQLNGAQTQGGALSTWYSLVTQLNNYIGSPTA--GISTAITSYFTGMQN 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + S+  + +T + NA+ +      + ++   +R   + ++   ++ +  + +++  +
Sbjct: 121 VANSASDSSVRQTAMSNAQTLANQITAAGQQYDALRQSVNTQLTSTVTQINAYTAQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I   ++     +  +DQRD+ +  +S + G+  +  ++    V+ S GT L      
Sbjct: 181 NQQIAAASSQGQPPNQLMDQRDLAVSNLSNLAGVQVVRNSDGY-SVFMSGGTPLVVADKS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S+                +++  G +  LL  R   +   + 
Sbjct: 240 YQLATVTSPSDPSELTVVSQGIAGATPQGPNQFLSDASLSGGTLGGLLAFRSQTLDPAEA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +A       + ++ +  +     G  +      +                   +  
Sbjct: 300 QLGAIATSFAAQVNAQNALGIDLSGKVGGNLFSTGAPITYANQGNTGNAALSVSFANAAQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAG---YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               D         + + + A         +        NF F   +    +   ++  R
Sbjct: 360 PTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAGDKFTVQPTR 419

Query: 406 NSIGWLEKNRSDSHDLHMKS 425
            ++       S+   +   +
Sbjct: 420 GALNGFGLTTSNGSAIAAAA 439



 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/351 (10%), Positives = 96/351 (27%), Gaps = 14/351 (3%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
           ++ +    A          + +    +    ++  +     S      + +Q +     +
Sbjct: 291 SQTLDPAEAQLGAIATSFAAQVNAQNALGIDLSGKVGGNLFSTGAPITYANQGNTGNAAL 350

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           S     +     ++  + Y     TL +     +     +        N  F  G + + 
Sbjct: 351 SVSFANAAQPTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAG 410

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           ++ +  P         +  S           +      +         +  +      A 
Sbjct: 411 DKFTVQPTRGALNGFGLTTSNGSAIAAAAPYVPSATTTNTGNGTIGGLSVTSATAAANAH 470

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--------------SKKFLWNVKN 367
                        + T+  N       S  +   S                   + +   
Sbjct: 471 NYTITMGGTTAAPTYTVTDNTAVPPTTSAAQPYQSGSPITLTAGVTVTVSGTPAVGDTFK 530

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +A      N   ++   + + +  +  N + TL     N +  +    S           
Sbjct: 531 VAPNTGGTNDGSNALALSKLVNSKSFGNGSATLTGAYANYVNGIGNTASQLKSSSAAQTA 590

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +   I+++  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 591 LVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTASTLFQTVLGL 641


>gi|115353118|ref|YP_774957.1| flagellar hook protein FlgE [Burkholderia ambifaria AMMD]
 gi|115283106|gb|ABI88623.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria
           AMMD]
          Length = 413

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALSSVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D    V                +  + + L+        +  T +       +  K  
Sbjct: 126 LADKNGVV----------------NTAQTVPLQAPTTNISPTATTKITGQFNLNSQDKVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  + +   +  +  + +Y              +           
Sbjct: 170 TKTPFDATDTSTYNYSTSVQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGATTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +  +   I      +        G+ +  +   D                          
Sbjct: 230 TFDSSGAIKSTTTGTPAVPTTSVGQFQFTVPTTDGSTTP--------------------- 268

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    Q+                      
Sbjct: 269 -------------------------QPLTLDLTGTTQFGGKDGVNNLAQDGYASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E   S    +     
Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVNLGGNQYA--ETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|323137001|ref|ZP_08072081.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242]
 gi|322397762|gb|EFY00284.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242]
          Length = 417

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/485 (9%), Positives = 100/485 (20%), Gaps = 77/485 (15%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVVT 54
           S   +FN +    +  S   A+I  NI N+    Y R  T                  V+
Sbjct: 3   STFGLFNTSIMGMSAQSDALANISENIANSGTVGYKRATTHFLTVLSGFQGSNQFGGGVS 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            RS         L    S+         F  + +          +               
Sbjct: 63  TRSRYDITGQGALMHTGSSTDMAIRGNGFFVVSD------GAGGTFLTRAGSFVPDSSGR 116

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N +   L       A       N  +        +         S +           
Sbjct: 117 LVNAAGYYLMGFPAGPAAPTTSATNALSSMSIVQIRNDRLYANPTTSGV----------- 165

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                                     +S  + +S                 T        
Sbjct: 166 --------------------------LSANLPVSAT----VVPAANLPSTNTAGAQFSAK 195

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +    ++       +  +      +         G            +       +   
Sbjct: 196 TSLTVYDNLGKPVVLDVYYAKTADNTWEMTMYDASGATSGGFPYASGPIATQTLTFNPAN 255

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +    +    + G +                      ++  +    Q  +        
Sbjct: 256 GSIASGGTLNFTVPGGAS---------------------VTLDMSNTTQLGAPFVVNNAT 294

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            + +         ++    L     +          +A +     L  Y  N        
Sbjct: 295 VNGNAAGAIRQVQISSDGTLSYQLDNGQMVPAYLIGIANVAAPTELASYTGNVYT--ATG 352

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +    +  F  I+ +      V+L  ELS +I  ++SY  + +      ++LQ 
Sbjct: 353 ASGPISVGAPGKGGFGDIASATLEASNVDLATELSTMIIAQRSYTANTQSFQVASEILQV 412

Query: 475 LLEGV 479
           L    
Sbjct: 413 LNNLK 417


>gi|304438499|ref|ZP_07398439.1| flagellar basal body and hook protein [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368582|gb|EFM22267.1| flagellar basal body and hook protein [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 711

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 93/288 (32%), Gaps = 4/288 (1%)

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
            R  L     ++  ++   +    + + T DG      +  +     M      +     
Sbjct: 428 YRGRLNGDDGKVKSVTRTSKEEESVTLTTKDGQVFTGAINGEYTVGNMYYPPSVTTFTVY 487

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
              G   S              +    D      ++   E++  L  +  +         
Sbjct: 488 DSLGGAHSIPLVFRKVGANEWDMSLGADDTYSYKEDNGTEVSAQLTKTRLKFSQTGHYVS 547

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
               + ++   +  +      ++ ++    QY  + + ++     + + +     +    
Sbjct: 548 GDATVSLSYKREGAEEPKPHKVTVSLGALTQYSGSST-IKAESDGNAEGVLKNVTIDSTG 606

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            +   Y +   K      +A  N    L     N   + + N S + ++   S +    I
Sbjct: 607 TITGVYSNGKIKAEAQLAIAQFNNPSGLTRAGGNF--FQQSNNSGAANVKTASDLGC-TI 663

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + S      V+L ++ S +I  ++ +  ++K+I   D+ML+TL+   +
Sbjct: 664 TPSALEMSNVDLADQFSDMIVTQRGFQSNSKIITVADEMLETLISMKR 711



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/402 (6%), Positives = 79/402 (19%), Gaps = 14/402 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++       +       +   +  NI N +   Y         +    +           
Sbjct: 1   MMRSMFSGVSGLKGHQTRMDVVGHNIANVNTVGYKASRVTFADTLYQTSSGASAPTGNLG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                      N+         ++                +    + + +          
Sbjct: 61  GINPKQIGLGMNVASIDTIFGDASAQGTGKNTDVALSGNGLFIVKNGSGTYYTRDGAFEF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +            +  +      +           K       E+    + L    + 
Sbjct: 121 DAQGNYVLPGNGSFVQGWMARENGELVTTEQPGNITIKAGKSMQPEMTGAATYLNNLNAN 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                 A                 +   +  +S     +  V  ++D+  Y         
Sbjct: 181 TKGYEIASIVAKYKDGTQKSLASYKQGNVGVMSLGTDKNRSVTLDDDVADYKFTTNDDLC 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                       +   + + N   I G+ + +N  S   + +        +  V      
Sbjct: 241 VPGATQGRALFKTTVTSLDPNGHNI-GLTLKNNPDSFSIQEQNGTTFSDIEFDVNTGGPY 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  + G           S+           K L+      +            +P 
Sbjct: 300 SIGQNFTISGEIDTNGVTTNGSDPGVTELTLKNAKILNPDGTTTLKTLTNKVKVKVPSPK 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                     KF  ++  +    D+     ++++     D  
Sbjct: 360 DFTYQDGDRLKFGMSISKMEAETDVKAATPNTYSNGTKLDGN 401


>gi|299068732|emb|CBJ39971.1| flagellar hook protein FlgE [Ralstonia solanacearum CMR15]
          Length = 401

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/473 (12%), Positives = 112/473 (23%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+    I  N+ NA+   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGASDNQIGQGVDVTKVSQ--------------------SFTQGNVTVTGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T      +      +  R  Q              ++   ++   T  N       A+  
Sbjct: 87  TGFYRMVDASSGQVSYTRNGQFQ------------TDKNGYIISATGQNLTGYAADATGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  ++ +   +T    N D             TVP    F   NS T 
Sbjct: 135 INTAVLTNLQIPVNDLAPLATTNTAFSINLDAA----------GTVPTTTPFSATNSATY 184

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +    DG   S    +   +      +                             
Sbjct: 185 NHSVSEQVYDGTGTSHMLTNYYVRTGTGWDVYSTVDGAAPTGGNPV-------------- 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +    +   L  +     +        S       QY    +                
Sbjct: 231 -TSLTFNSSGALTSSPSKVAVAFTGMSIASMDFTGTTQYGGGFNDTSITQDGYATGRLAS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +          +        L     N   W+E   S S  +    
Sbjct: 290 YSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQ--WVETAESGSPQMGTPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D +LQTL+  
Sbjct: 348 MGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLVSM 400


>gi|206558976|ref|YP_002229736.1| flagellar hook-associated protein FlgK [Burkholderia cenocepacia
           J2315]
 gi|198035013|emb|CAR50885.1| flagellar hook-associated protein 1 (HAP1) [Burkholderia
           cenocepacia J2315]
          Length = 643

 Score =  100 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/440 (11%), Positives = 132/440 (30%), Gaps = 21/440 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVV 53
             + N   +  N A     +  +NI NA    Y     +              P+ V  V
Sbjct: 3   NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGVNTV 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T + +        L+   +  G      S                  +  I+     +++
Sbjct: 63  TVQRQYSQYLSDQLNGAQTQGGALSTWYSLVTQLNNYIGSPTA--GISTAITSYFTGMQN 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + S+  + +T + NA+ +      + ++   +R   + ++   ++ +  + +++  +
Sbjct: 121 VANSASDSSVRQTAMSNAQTLANQITAAGQQYDALRQSVNTQLTSTVTQINAYTAQIAQL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I   ++     +  +DQRD+ +  +S + G+  +  ++    V+ S GT L      
Sbjct: 181 NQQIAAASSQGQPPNQLMDQRDLAVSNLSNLAGVQVVRNSDGY-SVFMSGGTPLVVADKS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +    +     S+                +++  G +  LL  R   +   Q 
Sbjct: 240 YQLATVTSPSDPSELTVVSQGIAGANPQGPNQFLSDASLSGGTLGGLLAFRSQTLDPAQA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +A       + ++ +  +     G  +      +                   +  
Sbjct: 300 QLGAIATSFAAQVNAQNALGIDLSGKIGGNLFSTGAPITYANQGNTGNATLSVSFANAAQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAG---YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               D         + + + A         +        NF F   +    +   ++  R
Sbjct: 360 PTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAGDKFTVQPTR 419

Query: 406 NSIGWLEKNRSDSHDLHMKS 425
            ++       S+   +   +
Sbjct: 420 GALNGFGLATSNGSAIAAAA 439



 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 96/351 (27%), Gaps = 14/351 (3%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
           ++ +   +A          + +    +    ++  I     S      + +Q +     +
Sbjct: 291 SQTLDPAQAQLGAIATSFAAQVNAQNALGIDLSGKIGGNLFSTGAPITYANQGNTGNATL 350

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           S     +     ++  + Y     TL +     +     +        N  F  G + + 
Sbjct: 351 SVSFANAAQPTTSDYTLAYDGTNYTLTDRATGTVVGTSTSMPASIGGLNFSFSSGSMSAG 410

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           ++ +  P         +  S           +      +         +  +      A 
Sbjct: 411 DKFTVQPTRGALNGFGLATSNGSAIAAAAPYVPSATTTNTGNGTIGGLSVTSATAAANAH 470

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV--------------SKKFLWNVKN 367
                        + T+  N       S  +   S                     +   
Sbjct: 471 NYTITMGGTAAAPTYTVTDNTAVPPTTSAAQPYQSGSPITLTAGVTVTVSGTPAAGDTFK 530

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +A      N   ++   + + +  A  N + TL     N +  +    S           
Sbjct: 531 VAPNTGGTNDGSNALALSKLVNSKAFGNGSTTLTGAYANYVNGIGNTASQLKSSSAAQTA 590

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +   I+++  +  GVN  EE + L++ +Q Y  + K+I     + QT+L  
Sbjct: 591 LVGQITQAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTASTLFQTVLGL 641


>gi|241589579|ref|YP_002979604.1| protein of unknown function DUF1078 domain protein [Ralstonia
           pickettii 12D]
 gi|240868291|gb|ACS65950.1| protein of unknown function DUF1078 domain protein [Ralstonia
           pickettii 12D]
          Length = 401

 Score =  100 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/473 (12%), Positives = 108/473 (22%), Gaps = 74/473 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  + AS+  +SI  N+ N +   Y +                           
Sbjct: 2   GFQQGLSGLDAASKNLSSIGSNVANVNTVGYKKSTVQFG---------------DVYARS 46

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           ++ A  + IGQ   +                                + + N  +  +  
Sbjct: 47  LVGATDNQIGQGVSVTRVSQ--------------------SFTQGNVTVTGNPLDIAING 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  +      +  R  Q              ++   F+   T  N       AS  
Sbjct: 87  MGFYRMVDSSSGQVSYTRNGQFQ------------TDKNGFVISATGQNLTGYGVDASGK 134

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                L    + +  +      +T    N +        T    T     N         
Sbjct: 135 VNTAALTNLRIPVNDLVPQATRNTAFGVNLNAAAAVPGATPFSPTNSATFNHSVSEQVYD 194

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +                          A   + +  V                  S   
Sbjct: 195 GT-------------------------GAPHMMTNYYVRTGAGWKVYSQVDGTSPVSGNP 229

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  +   L        +        S       QY    + +              
Sbjct: 230 VTTLTFNSNGQLTSGSTKIAVSFPGMSINSIDFAGTTQYGGGYNDVMVKQDGYATGRLAS 289

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   Y +  +  F    +A       L     N   W+E   S S +L    
Sbjct: 290 YSVGIDGTVTGQYSNGRSAVFGQIAMANFKAPEGLQNIGGNQ--WVETANSGSPNLGTPG 347

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F  +  S      V+L  EL  +I  ++SY  + + I   D +LQTL+  
Sbjct: 348 MGSFGLLRSSAVEQSNVDLSVELVNMIVAQRSYQANAQTIKTEDSLLQTLVSI 400


>gi|331667482|ref|ZP_08368346.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271]
 gi|331065067|gb|EGI36962.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271]
          Length = 218

 Score =  100 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 14/220 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           + ++ N A +  N A     +   NI + +   Y R+ T+                 V V
Sbjct: 1   MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L A  +            +  + M +     +S    +     SL+
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N  +    + +I  +E +V  F T+ + ++      +  I   +  +  +  ++  
Sbjct: 119 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 178

Query: 173 VNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           +ND I   T   +    ++ LDQRD L+ ++++I+G+   
Sbjct: 179 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS 218


>gi|299822273|ref|ZP_07054159.1| flagellar hook protein FlgE [Listeria grayi DSM 20601]
 gi|299815802|gb|EFI83040.1| flagellar hook protein FlgE [Listeria grayi DSM 20601]
          Length = 411

 Score =  100 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 105/478 (21%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y R+  +        T+ +  S     
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKRQSVVFNDLLYQNTLGSVTSG---- 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +            A+    +A            +   +           + 
Sbjct: 57  -----LYAGTNPMSFGSGTKIGAVITDYTAGSPTATGRNKDAALQGNGFFIAGDRSGGNA 111

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +       A        T + +     A       ++             +N AI  +  
Sbjct: 112 VYTRDGSFAVSSDNFLTTQSGKYVMGYATDKNGNVID----GNLRPIQIPLNSAIPGEAT 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                   +         ++  I +      ++ + V   DG                  
Sbjct: 168 KNAKLSGNIPTDWKGKDTLTSEISVYDDAGGSHKLQVELKDG------------------ 209

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  ++ +  +   + +  N  +    G +                           +  
Sbjct: 210 -TRAADGSISYSYELKIDGNALTPARTGTLN------------------------YNAQG 244

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E    A          I       D  L +  +          S+          +    
Sbjct: 245 ELTNAAALENINVNQTIQGKNVSFDFDLSKMTNYETEQVFSPSSDGKGAATVKDFAVTDA 304

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             +        +I             D +                        S      
Sbjct: 305 GYIAVSYSDGTIIPVAQLGVATFSNVDGLVKNGNGEYTPGL-----------SSGDPVFG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS +      V+L +E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGASLEGSNVDLSQEFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|289670516|ref|ZP_06491591.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 229

 Score = 99.7 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAYVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             I    ++++ A D LDQRD L+ K+    G + ++++   M V+T+ G
Sbjct: 180 GTI--GNSAQNAAPDMLDQRDALVTKLVGYTGGTAVIQDGGFMNVFTAGG 227


>gi|291613038|ref|YP_003523195.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1]
 gi|291583150|gb|ADE10808.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1]
          Length = 405

 Score = 99.7 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/474 (11%), Positives = 115/474 (24%), Gaps = 72/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS+    I  N+ NA    + +          +                
Sbjct: 2   GFQQGLSGLNAASKSLDVIGNNVANASTVGFKQSQAQFADVYASSMAG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S+ GQ  +      + +  +  +    + +  ++           N S      
Sbjct: 50  ------SSGGQAGIGTRVATVAQQFTQGNITTTNNSLDMAVSGSGFFRMDNNGS------ 97

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                    +        ++ K     + +       L      +     A    + +  
Sbjct: 98  ---------ITFSRNGQFQLDKNGFIVNSQGYKLTGFLPNAAGAIVATTPADIQVSTADL 148

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 +    L       +        NN      S  +T+++++            T 
Sbjct: 149 LPKATANVTAGLNLDARSTVPAIAPFDPNNPATFNNSTSSTIYDSLGGPHVASLYFVKTA 208

Query: 246 TSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           T+  +    +DG  V +   +A+       L     +V                      
Sbjct: 209 TNAWSSYLTVDGTQVGAGALTAMTFSSSGVLTAPAGAVTSAA------------------ 250

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                                      Q +S       Q+ S                  
Sbjct: 251 ------------------FTPAGGGAAQTLSINFSGTSQFGSTFGVNSLSQDGYTSGHMT 292

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
             +      +   Y +   K      +A  +    L     N   W+E + S +  +   
Sbjct: 293 GFSTGSDGIVTGRYSNGQTKTLAQVVLANFSNAQGLQPLGNNQ--WVETSTSGTPLVGAP 350

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  +  S      V+L  EL  +I  ++ Y  + + I   D++LQT++  
Sbjct: 351 GSASLGVLQTSAVEDSNVDLTAELVNMITAQRVYQANAQTIKTQDQVLQTIVNL 404


>gi|212637785|ref|YP_002314310.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3]
 gi|212559269|gb|ACJ31723.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans
           WP3]
          Length = 402

 Score = 99.7 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 112/474 (23%), Gaps = 73/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI N+    +    +  +                     
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNV-------- 53

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                                +                +    D     S      +  +
Sbjct: 54  -----------------MSTSQNFSMGGSLVYTGRQLDMGIQGDGFFVLSSQDGNTMYAR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + N +      + +   +Q           L+  N+     +   +            
Sbjct: 97  AGMFNQDADGFVTDPAGNRLQGY--SVSGTGNLQTGNVTDLQVQAGALPAKATSTIGLIS 154

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +    +D  D ++               +N    ++S     ++++  +    +    T 
Sbjct: 155 NLDARVDPIDPVVNP----------FDPDNAATYHSSSTVAAYDSLGNEHALTQYYVKTA 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +  +                        + D  V               G     D
Sbjct: 205 DNTWSVHY-----------------------MMDDVDVTPA-----------AGHQLTFD 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +         +    +       ++     + QY S+ +      +       N 
Sbjct: 231 SDGMLTGGDSLTLNINDPAIIGGASTLNLALGYDKSTQYASDYNNSSLNQNGYTSGELNG 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     L   Y +   +      +A  N    L+  + N   W   N +    +   +
Sbjct: 291 IRLDESGMLYGTYTNGQEQLQGQVVLADFNNPNGLIPVSNN--AWTATNAAGQPIVGTPT 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 349 TGTLGSVASGYLEGSNVDTTAEMVSLMTAQRNYQSNAKVLDANSTMQQALLNAI 402


>gi|170694392|ref|ZP_02885546.1| protein of unknown function DUF1078 domain protein [Burkholderia
           graminis C4D1M]
 gi|170140815|gb|EDT08989.1| protein of unknown function DUF1078 domain protein [Burkholderia
           graminis C4D1M]
          Length = 502

 Score = 99.7 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/488 (10%), Positives = 109/488 (22%), Gaps = 32/488 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70
              I  NI NA+   +            N                    +      + + 
Sbjct: 17  LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLSEVQQQFSQGTITST 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV--- 127
           + A+        F  L    S     N       +    + +              +   
Sbjct: 77  NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSTGVINTA 136

Query: 128 ------IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF-K 180
                 +  A    +     A  +     D        ++        LT     I    
Sbjct: 137 QTVPLSVPTANIAPKATTNIAAGLNLNAQDPLMLGTPSVTAATTNAGTLTTPGATITNTA 196

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +  D +                +G ST         +   +G T+             
Sbjct: 197 SGTNKDNYTVTFTSATAYTVTDTTLGTSTTGTYTAGSPISLGNGQTVTFNGVPATGDSYA 256

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQL 290
            + T  + +          +S        G                 +   V     + +
Sbjct: 257 IAPTPVAFNQNSSSTYNYSTSTTVYDTLGGSQTVNMYFAKTAAGTWDVYAGVSTGTASLV 316

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                   G+       +G +   P +F         +   Q ++  I    QY      
Sbjct: 317 GHANFNSSGTLLGTTDASGTATTTPYVFNFSVPTTDGSATPQALTLNIAGTTQYGGKDGV 376

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                            +     L  +Y +          +A  +    L+    N   +
Sbjct: 377 NSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--EF 434

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            + ++S    +          +         V+L  EL  LI  +++Y  + + I     
Sbjct: 435 QQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQT 494

Query: 471 MLQTLLEG 478
           + QTL+  
Sbjct: 495 VDQTLINL 502


>gi|94264101|ref|ZP_01287900.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93455517|gb|EAT05707.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 1058

 Score = 99.7 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/422 (8%), Positives = 103/422 (24%), Gaps = 13/422 (3%)

Query: 65   KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
            + + A+   +           +    +            I              +     
Sbjct: 644  RRVIANGDTLRFTGTAADGTVINLGDADFVVGTTGAGDAIDDFITWFNEIFGADT----- 698

Query: 125  KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
              +   A     +    + E+ +       +            +   + N     +    
Sbjct: 699  VALEGGALAFTDDDEVLSVELAEYVNATKAQPLGAGDFESSSANIGGMTNVTTTKRELIS 758

Query: 185  HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             D     D  D  +               N           T       + ++    +  
Sbjct: 759  RDRAFSTDSGDPPVISAGTSWDSVYDSEGNQVGNGTIRFEGTDHNGTSVEGSYPIDLNAD 818

Query: 245  VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL------DEMARVLI 298
                   +  +     +        G++     + D +    ++ L       ++A V  
Sbjct: 819  PVPTVQGLLDEISETLNADAHIDGAGRLVIRDWVSDGIGDDEKSALSFQITEYDLAGVDG 878

Query: 299  GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            G+ ++         +     + +        + +          QY ++ + +       
Sbjct: 879  GAPAQIFGPVATDFHAIAGSLEEDGSQRGTVVSRSFETEAMSTTQYANSSTTIYQDQDGF 938

Query: 359  KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                    ++     +  +Y +          +A       L +   N   +    +S +
Sbjct: 939  AAGFLQSVSVDTGGIITGNYSNGQVLMQAQVALADFANLQGLHKVGGNI--FRATTQSGA 996

Query: 419  HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                M        I+ +      V+L  E   +I  ++ +  ++K+I  TD+ML  L+  
Sbjct: 997  PVTGMPGTNGLGEIAPNSLEQSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELINI 1056

Query: 479  VK 480
             +
Sbjct: 1057 KR 1058



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/415 (8%), Positives = 91/415 (21%), Gaps = 20/415 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL +      +  +        +  NI N +   +                      + 
Sbjct: 1   MSLSSSLYAGISGLSTMGNSMNVLGDNIANVNTTAFNSSRATFQDVLSQSVATSAGVAQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              VT  + +         + S+A       + F     MM A             + R 
Sbjct: 61  GRGVTLTTVDGLFAQGSFESTSTATDMAIGGEGFF----MMRASGSAEADMFTRAGEFRF 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    + +   +    +D+A                +          ++  +    S 
Sbjct: 117 DTQGNLTSPAGHFIQGWQVDSATGQSFGTIGD----INLSRSTPPVRTEQVEMIVNLDSR 172

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-DGTTLF 228
               +    F      +         +     +    I           V    D T   
Sbjct: 173 EQPASQQRLFDAWDGTNMAAVNPTAPIDDANYAYTTSIKVYDSKGAAHDVTIYFDSTPKD 232

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +  +  +   V  +   +        + +        +   +    S      +
Sbjct: 233 NQWEFLVTCDPASDLRVLDDREKVIHAPDERYNYEEHEGAGALMYGTIDFDTSGAIKGMD 292

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
             +      +      + I  +  +    F A+   D  +++          +       
Sbjct: 293 AWNVPPDGKVDPAQTTNRITLDPADNYFSFGANFTGDEQDQMIDLNFGARFSSQLSNIRQ 352

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             + + G+ S        N       I+    +  +      V G +      +Y
Sbjct: 353 ILVTNEGAYSDANATTPINRETLWREIHDRNGNQMEGGDLITVTGYDNEGYARDY 407


>gi|168703389|ref|ZP_02735666.1| hypothetical protein GobsU_27906 [Gemmata obscuriglobus UQM 2246]
          Length = 430

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/480 (11%), Positives = 126/480 (26%), Gaps = 50/480 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL A+F    +     S     I  N+ N +   Y  +  +                  
Sbjct: 1   MSLNALF-VGSSGLTTNSSALDVIGNNLANINTTGYKDQRMVF---------------RD 44

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            ++  +    S+  G                  +         +  +       + N + 
Sbjct: 45  VVYQTLSSGTSADAGT--------------GGVNPTQVGFGVGVGSIGTQFTQGNLNPTG 90

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L   +      V          ++ +   A         +   +L +        +F 
Sbjct: 91  RSLDVGLQGRGFFV----------MRNVEDVAYTRAGAFGVDSAGYLVDPGTGFRVQRFG 140

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
              +  A +  D +  +   +   I   T         +    G         ++    +
Sbjct: 141 PVGEGGASNAGDPQFQIPGNLDIQIPFGTGAAGIATTNID-YQGNLSSAMQVGEVATTAI 199

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
             Y   S +  + +     ++N  +           Q+  +  PI  N   ++       
Sbjct: 200 QVYDAQSTARAVTVTFTKTAANTYTPSVLVSGADAAQVTLTGGPISFNSTGQIVGTANTP 259

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +    +  N+           +      L  G+        Q+    +    G   S  
Sbjct: 260 VTLTLTLGANALPGINTAQTITLNLGTAGLTNGL-------TQFGGATTASAIGQDGSGF 312

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++     +   + +    N     VAG N    LL    N   +     S    
Sbjct: 313 GTLTDVSIDADGIVQGKFTNGRTINLAQLAVAGFNNEDGLLRSGNNY--FRSSVASGEAL 370

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  Q     +      +  V++  E S LI  ++ + ++ + I  T+  LQ L   ++
Sbjct: 371 IGLAGQGGRGSLMGGALESSNVDIAIEFSRLIVAQRGFQVNARTISSTNDTLQELANIIR 430


>gi|209521596|ref|ZP_03270294.1| flagellar hook-associated protein FlgK [Burkholderia sp. H160]
 gi|209497979|gb|EDZ98136.1| flagellar hook-associated protein FlgK [Burkholderia sp. H160]
          Length = 664

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 115/382 (30%), Gaps = 18/382 (4%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVV 53
             + N   +  + A     +   NI NA    Y     + +               V+  
Sbjct: 3   SNLLNIGLSGLSAAQWGLTTTGENISNASTAGYTMETPVYSEVGGTYTGSGYLPMGVSTD 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T            L+   S+        +       +             IS     L+S
Sbjct: 63  TVTRAYSQYLTTELNNAQSSSSSLTAYNTMITELNNLVGSPTS--GIASAISGYFTGLQS 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + + S     +T I +A+ +    N +  +  ++R+  + ++   ++ +  + +++  +
Sbjct: 121 VANSASSVSTRQTAISDAQTLANQINAAGEQYDQLRSSVNTQLSNTVTQINTYTAQIATL 180

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           N  I   +      +  LDQRD  +  +S+++G+S + ++N    ++ S+G  L      
Sbjct: 181 NTQITQASNQGQSPNQLLDQRDEAVANLSKLVGVSVV-QDNGSYSLFMSNGKPLVLAGNS 239

Query: 234 DINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +S   T                   +   ++V  G +  LLQ R   +   + 
Sbjct: 240 FNLGTATSSGDPTELSVQYLGQAGATPAPTPQTLSDTSVSGGTLGGLLQFRSQTLDPAEA 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QL  +A       + ++ +        G  +            Q             +  
Sbjct: 300 QLGAIATSFAAQVNAQNELGLTLSGTAGGALFTVGSPTVYANSQNTGTATLAVSFANATQ 359

Query: 349 SFLRDGGSVSKKFLWNVKNLAG 370
               D         +++ +   
Sbjct: 360 PTTSDYTLSYNGSTYSLTDNET 381



 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 92/364 (25%), Gaps = 4/364 (1%)

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +   S         +    +      +   V      A+ +     +    F +      
Sbjct: 303 AIATSFAAQVNAQNELGLTLSGTAGGALFTVGSPTVYANSQNTGTATLAVSFANATQPTT 362

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                       +    +   V+    +    I  +  +     +   D  T+  T    
Sbjct: 363 SDYTLSYNGSTYSLTDNETGKVVGTASNLTSPIDGLQFSVASGTMKAGDSFTVEPTRGAL 422

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
             F    +      +    +     S+     V +G + A      S   I       + 
Sbjct: 423 DGFALTTTSPSAIAAAAPVLASASTSNTGSMTVTQGTVSAGYSAPTSTSTITYTSGTGLT 482

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              +GS          S  +     A              + +   +    +N +     
Sbjct: 483 GFPVGSVVTVAGSPSTSYTISTATTAVPYSSSSGATLTITNPSASTSAGVMNNVTVT--- 539

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                    +   +       N   ++   + +           TL     + +  +   
Sbjct: 540 -LSGTPANGDSFTIEPNTSASNDGRNAQLLSNLTSAQVLNGGTATLTGAYASYVNTIGNQ 598

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            +           +   I+ +  +  GVN+ EE + L++ +Q Y  ++K+I     + QT
Sbjct: 599 TTQISTSATAQSTLVTQITTAQQSVSGVNINEEAANLLQYQQLYQANSKVIQTAQTLFQT 658

Query: 475 LLEG 478
           LL  
Sbjct: 659 LLGI 662


>gi|251789168|ref|YP_003003889.1| flagellar hook protein FlgE [Dickeya zeae Ech1591]
 gi|247537789|gb|ACT06410.1| flagellar basal body FlaE domain protein [Dickeya zeae Ech1591]
          Length = 405

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/473 (8%), Positives = 104/473 (21%), Gaps = 70/473 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N AS     I  NI N+    +   +           V             
Sbjct: 2   SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRV------- 54

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                              ++ +  +     + S    ++                +  +
Sbjct: 55  ------------------ASVLQDFTNGSINSTSRALDVAINGSGFYRLLNGNGSVVYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              +   R   + +                         +  ++
Sbjct: 97  NGQF--------------TLDSSRNIVNAQGLQLTGFPATGTPPAIQSGADPVGLSIPEN 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                      ++  ++     +T    +           T ++++    NF      T 
Sbjct: 143 TMSAKATNIASIIANLNSSDSTNTWNATDPTNTSNYKGSITTYDSLGNAHNFALYFVKTA 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +    D  +  +                                    +   +   
Sbjct: 203 ANNWDVYAQDTSITGAGFQGP-----------------------------TRLTFDTSGA 233

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +                    +              Q   + S         +      
Sbjct: 234 LVPTPPATAVTPVTLSMASLNGSAASTFTLAFTGSVQQNSGSNSTKTPTQDGYEPGELTG 293

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            +++    +I  Y +   +      +A       L     N   W   N S    +    
Sbjct: 294 YSISNDGSVIGSYSNKRTQLLGQIVLANFANPEGLSPQGDNV--WAATNNSGQAVVGSAG 351

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              F ++    + +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 352 TGNFGNLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 404


>gi|254175270|ref|ZP_04881931.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399]
 gi|160696315|gb|EDP86285.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399]
          Length = 413

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 109/469 (23%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +       +    N       +            
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPI---------- 55

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                    +     ++++  S     +++ +  ++   +     S N         +  
Sbjct: 56  --------GIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGMFQ 107

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
             +                                 ++     +N       A+      
Sbjct: 108 RDK-------------------------------NGYIVNSQGLNLMGYAANANGVINTA 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                      I+         + N +            + VP    F   +  +    +
Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  S N      K       +            L  +     G+ +     AG
Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAG 246

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 G F             Q ++  +    QY                 +    ++ 
Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               +  +Y +          +A  N    L+    N   ++E   S    +        
Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|239815263|ref|YP_002944173.1| hypothetical protein Vapar_2278 [Variovorax paradoxus S110]
 gi|239801840|gb|ACS18907.1| protein of unknown function DUF1078 domain protein [Variovorax
           paradoxus S110]
          Length = 395

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/477 (9%), Positives = 103/477 (21%), Gaps = 84/477 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L             S+    I  N  N +   +                          
Sbjct: 1   MLESIYVGMTGLLGYSRGLRVIANNTANINTPGFKSSSLQFADMFY-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                     + G      + +   ++         S +    +LR +       +    
Sbjct: 47  ----------SGGNLGGGSTSQNRDQVGFGLSTAGTSLSFKQGELRQTGNDLDMAVDGQG 96

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L      N +                             +    L         +     
Sbjct: 97  LFALQDANGKTTYTRAGQFK------------------FDADGTLVSRVNGEKVMGLDDR 138

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               A     Q   L +  S    +      +N +   T  G  + +            S
Sbjct: 139 GGLVAITLAGQMMSLGRPTS---RVEFSGNLSNTVTEQTIGGIAVVDASGASHTLTMKFS 195

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               ++S       ++  +   S      +        + +        +    L   FS
Sbjct: 196 VVSAAQSGTTMKVELMEGTTVVSTGQMVFVGGKPTPETAKLQAAYAPAGQPPMALTLDFS 255

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                                    +    S   D         
Sbjct: 256 ------------------------------------SDVVLFAGQTSLKVDSQDGIGPGA 279

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        +L  +Y +          +A  ++   +     N     E+   ++  L 
Sbjct: 280 LSGTTFDADGNLTLNYSNGSTVKGARLALARFDSPDAVGSLGDN---QFEQLDENAWHLG 336

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  +  F  +S        V+L +E S L+ +++ Y  S+++I   + MLQ L    
Sbjct: 337 VAGEGAFGKVSAGRVEISNVDLSQEFSDLVIMQRGYQASSQIISTANDMLQELFSMK 393


>gi|167626155|ref|YP_001676449.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4]
 gi|167356177|gb|ABZ78790.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 402

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/474 (10%), Positives = 115/474 (24%), Gaps = 73/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI N+    +    +  +              N      
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNVMN----TS 57

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              +   ++             E        + S                          
Sbjct: 58  QNFSAGGSLTYTGRQLDMGIQGEGFFMLSGQDGS-------------------------- 91

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                       FN +A       A +  +     +        +T +        A   
Sbjct: 92  ----TTYARAGMFNQNADGFITDPAGSRLQGYPVGATGNLQTGNVTDLQVQAGALPAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +   D  ++    I   +T   +++    ++S   T ++++ ++    +    T 
Sbjct: 148 STVGLISNLDARVE---TIDPAATPFDSDDASTYHSSSTVTAYDSLGKEHALTQYYVKTA 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +  ++ G    +  G                                        D
Sbjct: 205 DNTWSVHYMMGDTDVTPAGGH----------------------------------QLNFD 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +              +       ++ +   + QY S+ +      +       N 
Sbjct: 231 SNGMLTGGQDLTLDITDPNIVGGASNMSLALSYDKSTQYASDYNNSSLSQNGYTSGELNG 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     L   Y +   +      +A  N    L     ++  W   N +    +   +
Sbjct: 291 IRLDDSGMLYGTYTNGQEQLQGQVVLADFNNPNGLEPV--SNNAWAATNAAGQPIIGTPT 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 I+  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 349 TGTLGSIAGGYLEGSNVDQTAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLNAI 402


>gi|46579854|ref|YP_010662.1| flagellar hook protein FlgE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602680|ref|YP_967080.1| hypothetical protein Dvul_1636 [Desulfovibrio vulgaris DP4]
 gi|46449270|gb|AAS95921.1| flagellar hook protein FlgE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562909|gb|ABM28653.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris DP4]
 gi|311234145|gb|ADP86999.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1]
          Length = 564

 Score = 99.3 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/442 (8%), Positives = 98/442 (22%), Gaps = 11/442 (2%)

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              +          ++    + A S+    +      +   +  +A+  +  + T  ++ 
Sbjct: 126 GYVLQGWAIERSQNSLTSSAVTATSTTSKIKGSGVPVDIKLDGFTAEPQHTQNITLNVNL 185

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             +     S + +          N +  +     +  +       +  ++  E       
Sbjct: 186 DSNPGNDKSSSTTNPYFSLFETWNGQNPLTGTQPALAQ-SAFAYQSTIKVYDEAGTAHTL 244

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN---NDMVVYTSD 223
                 V+        +     +++   D    K           R         +    
Sbjct: 245 TVYFDQVDPDSVTNEPNGRKQWEYIVTMDPAEDKRVIAGTAMNTTRAAGLLMTGTLTFDT 304

Query: 224 GTTLFETVPRD-----INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
              L +           +     +    +   P+     +V+         G    +   
Sbjct: 305 TGQLVDQTAFTPFGQYTDTTPPWNEPTPNPGPPVTTPADLVNWQPTQMSSNGLPMMVANF 364

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
                            ++      +   A           A G                
Sbjct: 365 SGLTDSSVVGSPTAQNFLMELDLGLRSTNATTPWTSTPNAAAIGTDASLLPGLTSSQRQP 424

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                Y  + S                  +     +   Y +    +     +    +  
Sbjct: 425 SATTSYAGSSSTQFQKQDGYTFGFLQNITVDRDGIMQGKYSNGVTLDLYQVTLVDFTSKQ 484

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L     N         S        +      IS +      V+L  E   +I  ++ +
Sbjct: 485 NLRREGGNLFS--GTRDSGDPLPGPANSNGLGAISSNSLEQSNVDLAREFVEMITTQRGF 542

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
             ++K+I  TD ML+ ++   +
Sbjct: 543 QSNSKVITTTDTMLEVVVNMKR 564



 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/442 (6%), Positives = 90/442 (20%), Gaps = 17/442 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL A      +      ++   +  NI N +   +                      + 
Sbjct: 1   MSLTASMWTGVSGLLAHGERMNVLGNNIANVNTVGFKGSRMDFEDFLNQDTYSAAGVTQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V+  +   +         + +       + F ++K          ++        R 
Sbjct: 61  GRGVSIGAIFGDYSQGAFQTTNESTDLAIQGRGFFSVK-----PKGTEDTYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  +    +L    I+ ++  + +   +A         +   +++++         
Sbjct: 116 DADGYLVDPHGYVLQGWAIERSQNSLTSSAVTATSTTSKIKGSGVPVDIKLDGFTAEPQH 175

Query: 170 LTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
              +   +   +   +D +    +    L +  +    ++                  ++
Sbjct: 176 TQNITLNVNLDSNPGNDKSSSTTNPYFSLFETWNGQNPLTGTQPALAQSAFAYQSTIKVY 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +                                       + K        ++       
Sbjct: 236 DEAGTAHTLTVYFDQVDPDSVTNEPNGRKQWEYIVTMDPAEDKRVIAGTAMNTTRAAGLL 295

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
               +     G   ++       +        +             ++ +   P   S+ 
Sbjct: 296 MTGTLTFDTTGQLVDQTAFTPFGQYTDTTPPWNEPTPNPGPPVTTPADLVNWQPTQMSSN 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                  + S     +V       + +              P         +   A    
Sbjct: 356 GLPMMVANFSGLTDSSVVGSPTAQNFLMELDLGLRSTNATTPWTSTPNAAAIGTDASLLP 415

Query: 409 GWLEKNRSDSHDLHMKSQVVFN 430
           G     R  S            
Sbjct: 416 GLTSSQRQPSATTSYAGSSSTQ 437


>gi|298530010|ref|ZP_07017412.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509384|gb|EFI33288.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 755

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 118/411 (28%), Gaps = 8/411 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           G+  +   +++    ++      +   + I +L    ++ S   + ++   +  +     
Sbjct: 348 GEDYINADYDSENNTLNISVENEDDDGNNIDELSFEFQNLSSKTASELGVTSYKEGQPFS 407

Query: 135 VQNFNTSAREVQKIRADADK--EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
               N  A       +D     +  +++ +      ELT   D ++    S +   +F+ 
Sbjct: 408 AMWHNWDATNDDDPISDNRYAYQSTMKVYDENGTSYELTNYFDPVEIDDPSGNKHWEFMT 467

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
             +        +   S          +  + G  L +     +  E  +  T    +   
Sbjct: 468 TVNPEHDNREGMED-SEKRGVLMTGALTFNPGGELIDQSAYTLGTEVYDDDTGEPIAGGD 526

Query: 253 F---IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           F   +    +S    +  P      L     +       Q  EM   L       +  + 
Sbjct: 527 FASDLSNWSLSDFSDNGYPVFTPNFLGIEGQNFTGAEGAQNIEMNFGLRNQTGNWEAGSA 586

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
            S      F        +    +        + QY S+ + L                + 
Sbjct: 587 ESPAELTEFGNTDFNFDNIAEFEETRREAQASTQYSSSSTTLMQNQDGYTTGFLQNIEID 646

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               L   Y +    +     +A  +    L +   N     E   S      +      
Sbjct: 647 RNGVLTGRYDNGQVMDLYALTLADFHNEQGLRKEGGNLFS--ETRSSGPAMTGLAGTRGL 704

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             IS +      V+L  E   LI+ E+ +  ++K I  TD ML  +++  +
Sbjct: 705 GEISSNSLEMSNVDLATEFVKLIQTEKGFQANSKTIQTTDTMLGIIMQMKR 755



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 55/215 (25%), Gaps = 21/215 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------- 49
           M L +      +      ++  +I  NI N     +                        
Sbjct: 1   MGLSSSMYTGVSGLKGHGEKMGTIGNNISNVSTVGFKGSRMHFEDFMSQDINTGAGVGQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   +   +     L + + A         F  +     +    + +        R 
Sbjct: 61  GRGVGVGAVMNDFSQGSLESTNEATDVAIGGDGFFQV-----SARGTDENLYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVI-----DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
             E Y  + + +++    +       A++       +  E+Q    D   +         
Sbjct: 116 DEEGYLVDPNNNVVQGWEVREDPPGVADDDEIIQTETGVEIQGAPGDIRLDDFQSPPEQT 175

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
           R + ++  ++   + ++++        D+      
Sbjct: 176 RKVDKMVNLDSRSEARSSNASTPLTGDDELGTEAN 210


>gi|295687866|ref|YP_003591559.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC
           21756]
 gi|295429769|gb|ADG08941.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC
           21756]
          Length = 571

 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 155/412 (37%), Gaps = 8/412 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSE 58
           MSL ++ + A      A  Q A    N+ NADN +Y R+   TT + +   V+  T    
Sbjct: 1   MSLTSILSSAGAALTTAQYQIAVSQTNVANADNASYSRKTVTTTATTQTLAVSTATVTRA 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                 K +   ++A G+  ++ ++    +         +  +  ++  + +L S + + 
Sbjct: 61  ADAYLAKTVDKTAAADGRDAVIDTYLQSYDASLGSVDGGDDVSSLLTAFQTALSSLASSS 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +       V   +       + S   +Q +R+ A+ EI   +  +   L  +  +ND I 
Sbjct: 121 TSATKASAVSAASSLASSIQSLSGD-IQSLRSQANLEIGETVDTINSTLETIKTLNDQIV 179

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             TAS  D  D  D+R   +  +S ++G+ST   ++N ++VY   G  L       +++ 
Sbjct: 180 STTASGGDVSDLEDRRAAAVTTLSSLMGVSTYKTSDNRVMVYAPGGEQLLGASVAKLSYN 239

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +S +  +          V   +  +++  GK+  L+ +RD V+   Q+ LD++A  LI
Sbjct: 240 PSSSLSADTVYPGSISGVTVNGKDITTSLTSGKLGGLISLRDDVLVGEQDALDQLASTLI 299

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              +        S     L  A  +   D         T  V     ++   +     + 
Sbjct: 300 SQVNAAANSGSASPPPNSLTSAIAVSGSDAFNA-----TGSVRVAVTNSSGAVVSTQDID 354

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 V +L    + I+    S +   +    A     V L +   +  G 
Sbjct: 355 LSAYATVDDLIAGLNSISGLNASISNGKLTIAAASSTHGVALADVGASIGGE 406



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/430 (12%), Positives = 103/430 (23%), Gaps = 3/430 (0%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             + + RS+      + +   +S +   + L            D                
Sbjct: 144 GDIQSLRSQANLEIGETVDTINSTLETIKTLNDQIVSTTASGGDVSDLEDRRAAAVTTLS 203

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           SL   S   + D          E+++                AD      IS +     +
Sbjct: 204 SLMGVSTYKTSDNRVMVYAPGGEQLLGASVAKLSYNPSSSLSADTVYPGSISGVTVNGKD 263

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +T    + K            + ++D L  +++  +        N+       +  T   
Sbjct: 264 ITTSLTSGKLGGLISLRDDVLVGEQDAL-DQLASTLISQVNAAANSGSASPPPNSLTSAI 322

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            V     F    S  V   ++   +           A     I  L  I  S +    + 
Sbjct: 323 AVSGSDAFNATGSVRVAVTNSSGAVVSTQDIDLSAYATVDDLIAGLNSI--SGLNASISN 380

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                     +        G S    G+    G  D+ +                 S   
Sbjct: 381 GKLTIAAASSTHGVALADVGASIGGEGVSGYFGFNDVFSGDTAVDIAVSSTLTSDASKFP 440

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 + +           G                            +LL YA   + 
Sbjct: 441 AATMDATSALAVGQIAIASGGTGAANAIASALSTSTSFTAAGNLTAGQSSLLTYAAGFVS 500

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 + +      S   +    +  +N   VNL EEL+ L   +Q Y  + +L     
Sbjct: 501 TAATTIAGAASQAETSSDAYAAAVDRLANLTTVNLDEELAMLETYQQVYQANAQLTSMVQ 560

Query: 470 KMLQTLLEGV 479
            +   L+  V
Sbjct: 561 DLFDVLMNMV 570


>gi|222100886|ref|YP_002535454.1| hypothetical protein CTN_1912 [Thermotoga neapolitana DSM 4359]
 gi|221573276|gb|ACM24088.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 759

 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/441 (8%), Positives = 108/441 (24%), Gaps = 2/441 (0%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             M     + VT  T  S +        + +++ +     +     +          ++ 
Sbjct: 321 TVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSSGNVIYSGTVDVSGGNFTISDSD 380

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T                 +  I+  T   +          S+                 
Sbjct: 381 ITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVIVRDSSGNEVYNGTTTVSNGSFT 440

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           IS+          V       T +           +    +         +   +     
Sbjct: 441 ISDSDITSGNDYTVTFLSSSLTIAPGAELVIPTSGEPRFYEADNPTNFVQVDYTSPRYTT 500

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                 +L         F ++ + T+ SES          +++        +  +     
Sbjct: 501 AVQVYDSLGNEYTVYYEFIRLGNTTIGSESFKNAWIWRAYTASGEPVTLVDENGSTGVGG 560

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           ++ +       +    V           +  + +   L         +      I+  + 
Sbjct: 561 NNYIAGLVEFDESGRPVQYRGLYYDSGSSSYALSSDELRTIQFDTGQNGDGVVTITADLS 620

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              Q+  + +        +   +     +    ++I  + +          +A  N    
Sbjct: 621 GITQFSGDSTVNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQIALAVFNNPAG 680

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L+E   +       + S    +          +         V+L EE + +I  ++ + 
Sbjct: 681 LMEVGNSLYAV--SSNSGVPKIGAPGSGGRGTLIPGALEMSNVDLAEEFTKMIVAQRGFQ 738

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            + ++I   D++L  L+   +
Sbjct: 739 ANARVITTADQILNELVNIKR 759



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/446 (7%), Positives = 77/446 (17%), Gaps = 16/446 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           ++           N       +  NI N +   +                          
Sbjct: 2   MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRAPQESVG 61

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T   Q      +          +     +        +        N            
Sbjct: 62  GTNPMQIGLGSQVASIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAFTL 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                    S     +      +                   +                 
Sbjct: 122 DSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNRPIGDLVISAGMTMPAKKTSNVRFEG 181

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               N      T +  D         V  +K +  +G      +    +    +     +
Sbjct: 182 NLNSNVGPGSFTITLTDDSGVDHDVRVWFEKTAGDLGTDPFSSSQRYTMRIDVNNDGTAD 241

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +  E          ++   I      +   S            + D+   +  N 
Sbjct: 242 VSGYAVFNEFGRVEEAGIYADSQTITANGSITGSTSLSDGTYQA---VVLDNSGNVVYNG 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             +++               +   +          + D+ L    + +         + S
Sbjct: 299 TVDVSNGSYTISDPNIVGGNDYTVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSS 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                         N           N Y              GI    T L      + 
Sbjct: 359 GNVIYSGTVDVSGGNFTISDSDITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVI 418

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISES 435
             + + ++ ++           IS+S
Sbjct: 419 VRDSSGNEVYNGTTTVSNGSFTISDS 444


>gi|300716218|ref|YP_003741021.1| flagellar biosynthesis, hook protein [Erwinia billingiae Eb661]
 gi|299062054|emb|CAX59170.1| Flagellar biosynthesis, hook protein [Erwinia billingiae Eb661]
          Length = 414

 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/476 (10%), Positives = 111/476 (23%), Gaps = 67/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +            +  V       +  ++ 
Sbjct: 2   AFSQAVSGLNAASSNLDVIGNNIANSATVGFKSATVSFADMFADSKVGLGVKVAAVTQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D    + S  +        F  + +                 +          N     
Sbjct: 62  NDGTTTSTSRGLDVAISQSGFFRMTDT------SGAVYYSRNGQFTLDANRNIVNADGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     VQ         +     + +   +   V N      T 
Sbjct: 116 LTGYPATGTPP----------TVQTGANPVALNVPTTAMSAKATSAAALVANLNSTDSTP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K  A    D   + +   +    ++T     N+  +      T             ++ 
Sbjct: 166 TKDWATTNTDLSSIDVDTYNSKATMTTYDSLGNEHNINLYYVKT----GDNSWKMYPVDG 221

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  S +          +    S+       A +Q+  + +         +        +
Sbjct: 222 TTGQSAAGAGANTDGSYNVTFNSSGQMTSPTATVQLATATLNGSAAGTFNLNLAGSQQQN 281

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 GN                                                K   
Sbjct: 282 TGTSTFGNPT------------------------------------------QDGYKPGD 299

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++  Y +   +      +A       L     N   W   N S    + 
Sbjct: 300 LTSYQINNDGTVVGTYSNEQTQTLGQIALANFANPEGLKSEGNNV--WSATNSSGQALVG 357

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +        ++     +  V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 358 LAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 413


>gi|296535149|ref|ZP_06897378.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957]
 gi|296264524|gb|EFH10920.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957]
          Length = 436

 Score = 98.9 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/480 (7%), Positives = 118/480 (24%), Gaps = 46/480 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL      A +     +    ++  N+ N+    Y R DT         T         
Sbjct: 3   MSLNGSLYAATSGLGAQTAAITNVSNNVANSQTTGYKRVDTAFAEQLSQSTAR------- 55

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      ++ +           ++  ++     N                     + 
Sbjct: 56  --LNGSSTVSAAPVATVSRGGDISQVENPLALAISGNGLFA-------------VSRPAG 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                  + +  +        ++  +    +               ++   +    +   
Sbjct: 101 TDANGNTVFSPTQFYTRNGDFSKTAEGYLVNTSGYALEGWPVANGAVNRGQLGLIQVDEA 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                 A +   Q  +     +     S   +      +  +   TL  T   D  ++  
Sbjct: 161 PY----APEATTQIGIGANLPASGTETSYSTQVPVYDNLGIARSVTLNWTKTGDYQWQVN 216

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 + S           +  G+ +P G + ++     ++     N     A + +G 
Sbjct: 217 VVGPDGTTSAGTATLNFGDGAGTGNGMPSGTLDSITNATGALAASGFNGQGSAATLTVGD 276

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                  +       Q                       + +  
Sbjct: 277 LFGAGSQPVAISLGTFGSTQGVTQYAGATYQQN------------------SVTANGAAP 318

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
             +    +    +++  Y +  ++     P+        L     +   +     +    
Sbjct: 319 GAYTGVGIKENGEVVVSYDNGKSRTIAQVPIVTFQNADGLQR--EDGQAFTATQAAGQFR 376

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    +     ++ S      V++  E S +I  +++Y+ +++++     ++   ++ ++
Sbjct: 377 VLAAGEQGTGTLATSSIEASNVDITSEFSKMIVAQRAYSANSRVLSTVSGLMSETVDMLR 436


>gi|295687864|ref|YP_003591557.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756]
 gi|295429767|gb|ADG08939.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756]
          Length = 425

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/485 (8%), Positives = 122/485 (25%), Gaps = 65/485 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL A  + A +     S+  ++I  NI N+    Y   D             +  +   
Sbjct: 1   MSLSAALSTAVSGLTAQSRALSAISENIANSSTTAYKTTDVYFQALVSGGKGSSTSTSAV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-----PTHYISKLRDSLESYS 115
                   +    +    +  +                                + + Y 
Sbjct: 61  TAKSSQAMSVQGTVTSTSVATNVAIQDAGFFVVTSDPAGAASEDMYTRNGSFETNADGYL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N     L     D    V+ +       +  I   +        + +    +       
Sbjct: 121 INTEGFYLMGWPTDAEGNVLASNTNDLTGLSAINLSSIGGTAKATTEIEMSANVPA---- 176

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                                     +    ++T ++  + + V  + G T  +T     
Sbjct: 177 ------------------------DAAVGAALTTSMQMIDSLGVSHTVGQTWTKTADNTW 212

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +    +  +       +            G + ++    D  V  F +   + A 
Sbjct: 213 ELTLSDPVLTSDGTT--QSGTINGGPYTVVFNTDGSLGSVTPALDFTVTGFSSGAADSAV 270

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L                               ++      T   +         ++   
Sbjct: 271 SL----------------------------DIGEVGGTDGVTQYASTSSTIGLEDVQTEQ 302

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             +     +  ++     +  ++ +  +      P+A  +    L     +   + E + 
Sbjct: 303 DGALYGELSGISIDSDGLVTANFDNGISLAIYQIPIATFSNPNGLTLV--SGTTYDENSA 360

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +    L++  +     +  S       ++  E + +I  +Q+Y+ +++++     M  +L
Sbjct: 361 AGQVHLNLPGEGGAGSLVASALEGSTTDIATEFNKMIIAQQAYSAASQVVSSASDMFDSL 420

Query: 476 LEGVK 480
           ++ V+
Sbjct: 421 IQAVR 425


>gi|53717914|ref|YP_106900.1| flagellar hook protein FlgE [Burkholderia pseudomallei K96243]
 gi|53724565|ref|YP_104798.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344]
 gi|67641538|ref|ZP_00440315.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4]
 gi|76810959|ref|YP_331879.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1710b]
 gi|121599135|ref|YP_994291.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1]
 gi|124384593|ref|YP_001028060.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229]
 gi|126449658|ref|YP_001082867.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247]
 gi|126453793|ref|YP_001064564.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1106a]
 gi|167001537|ref|ZP_02267332.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20]
 gi|167717660|ref|ZP_02400896.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98]
 gi|167736703|ref|ZP_02409477.1| flagellar hook protein FlgE [Burkholderia pseudomallei 14]
 gi|167813802|ref|ZP_02445482.1| flagellar hook protein FlgE [Burkholderia pseudomallei 91]
 gi|167822318|ref|ZP_02453789.1| flagellar hook protein FlgE [Burkholderia pseudomallei 9]
 gi|167843908|ref|ZP_02469416.1| flagellar hook protein FlgE [Burkholderia pseudomallei B7210]
 gi|167892410|ref|ZP_02479812.1| flagellar hook protein FlgE [Burkholderia pseudomallei 7894]
 gi|167900908|ref|ZP_02488113.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177]
 gi|167909127|ref|ZP_02496218.1| flagellar hook protein FlgE [Burkholderia pseudomallei 112]
 gi|167917164|ref|ZP_02504255.1| flagellar hook protein FlgE [Burkholderia pseudomallei BCC215]
 gi|217424944|ref|ZP_03456440.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576]
 gi|226199793|ref|ZP_03795344.1| flagellar basal body protein FlaE [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315744|ref|ZP_04814760.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b]
 gi|254182140|ref|ZP_04888737.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655]
 gi|254188070|ref|ZP_04894582.1| flagellar basal body protein FlaE [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196353|ref|ZP_04902777.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13]
 gi|254201896|ref|ZP_04908260.1| flagellar hook protein FlgE [Burkholderia mallei FMH]
 gi|254207230|ref|ZP_04913581.1| flagellar hook protein FlgE [Burkholderia mallei JHU]
 gi|254259636|ref|ZP_04950690.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a]
 gi|254295814|ref|ZP_04963271.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e]
 gi|254359732|ref|ZP_04976003.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280]
 gi|52208328|emb|CAH34261.1| putative flagellar hook protein [Burkholderia pseudomallei K96243]
 gi|52427988|gb|AAU48581.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344]
 gi|76580412|gb|ABA49887.1| Flagella basal body rod protein [Burkholderia pseudomallei 1710b]
 gi|121227945|gb|ABM50463.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1]
 gi|124292613|gb|ABN01882.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229]
 gi|126227435|gb|ABN90975.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106a]
 gi|126242528|gb|ABO05621.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247]
 gi|147747790|gb|EDK54866.1| flagellar hook protein FlgE [Burkholderia mallei FMH]
 gi|147752772|gb|EDK59838.1| flagellar hook protein FlgE [Burkholderia mallei JHU]
 gi|148028946|gb|EDK86878.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280]
 gi|157805870|gb|EDO83040.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e]
 gi|157935750|gb|EDO91420.1| flagellar basal body protein FlaE [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653096|gb|EDS85789.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13]
 gi|184212678|gb|EDU09721.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655]
 gi|217391964|gb|EEC31990.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576]
 gi|225928144|gb|EEH24180.1| flagellar basal body protein FlaE [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522489|gb|EEP85933.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4]
 gi|242138983|gb|EES25385.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b]
 gi|243062738|gb|EES44924.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20]
 gi|254218325|gb|EET07709.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a]
          Length = 413

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 108/469 (23%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +       +    N       +            
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPI---------- 55

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                    +     ++++  S     +++ +  ++   +     S N            
Sbjct: 56  --------GIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQ 107

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
             +                                 ++     +N       A+      
Sbjct: 108 RDK-------------------------------NGYIVNSQGLNLMGYAANANGVINTA 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                      I+         + N +            + VP    F   +  +    +
Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  S N      K       +            L  +     G+ +     AG
Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAG 246

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 G F             Q ++  +    QY                 +    ++ 
Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               +  +Y +          +A  N    L+    N   ++E   S    +        
Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|186477697|ref|YP_001859167.1| flagellar basal body FlaE domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184194156|gb|ACC72121.1| flagellar basal body FlaE domain protein [Burkholderia phymatum
           STM815]
          Length = 501

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/498 (11%), Positives = 120/498 (24%), Gaps = 31/498 (6%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66
             +    AS     I  NI NA+   + +          N               M    
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKQGAAQFADMYANSVATAVNNQIGIGTRMSQVE 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            +     I    +               +            +     Y  N     L   
Sbjct: 66  QNFSQGTISTDDIALHVAINGSGFFQMSNNGALTYSRNGVFQLDKNGYITNADGLKLMGY 125

Query: 127 VIDNAEEVVQN-------------FNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +    +                   +      +  +A   ++L   ++    S  ++ 
Sbjct: 126 AANANGIINTAGTVPLQVPTANIPPTATKTITAGLNLNAQDALKLGTPSVTFTTSTGSLT 185

Query: 174 ND--AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF--- 228
           N+  +I   T   +     +         ++   G ST    + +  +   +G T+    
Sbjct: 186 NNGVSITDATQGTNANTYTITFSSPTAYTVTSSDGTSTTGTYSANSPIKLGNGETITLAG 245

Query: 229 --------ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                      P  + F+  NS T +  ++    D +           K    +      
Sbjct: 246 TPATGDSLTVAPTALAFDPTNSATYSYSTSVPVYDSLGGEQQVDMYFVKTSAGSWDVYAG 305

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
               +   ++        G+       +GN  +    F         +   Q ++  I  
Sbjct: 306 KDGNVSTTKIGTAKFDTSGNLVSTLDSSGNPTSTLFAFNFSIPNSDGSATPQNLTLKIGG 365

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             Q+ S                     +     +  +Y +          +A       L
Sbjct: 366 TTQFGSKDGTNSLTQDGFAAGQLTNFTVGTDGIITGNYSNGQTAALGQVALATFANQNGL 425

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           +    N   +     S    +          +    +    V+L  EL  LI  +++Y  
Sbjct: 426 INLGNNQ--FQATAASGVAVVAAPGSTNHGSLQGGATENSNVDLTSELVNLITAQRNYQA 483

Query: 461 SNKLIMFTDKMLQTLLEG 478
           + + I     + QTL+  
Sbjct: 484 NAQTIKTQQTVDQTLINL 501


>gi|149375034|ref|ZP_01892807.1| Flagellar hook protein FlgE [Marinobacter algicola DG893]
 gi|149360923|gb|EDM49374.1| Flagellar hook protein FlgE [Marinobacter algicola DG893]
          Length = 618

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 118/406 (29%), Gaps = 7/406 (1%)

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
                 ++E + E          + +  ++    ++   +  +++     + I+NA+   
Sbjct: 216 SASATTTYEGMSEADLNAAIAAGNFSFDLAVGGVTVPVDTTGVTDAASLVSAINNAQAPT 275

Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
            + + +   ++ I    +       S+      E TV             D        +
Sbjct: 276 ISASLTGGNLRLIDNRGNNVTAGFTSDGPNQAPETTVGTVR-PQADREITDIASTSGATN 334

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
           +     +  I I+      +      +  TT+++++       +          N + + 
Sbjct: 335 LTDSWNARNIEITNQFNPLDQRTYNHATSTTVYDSLGNSHEMTQFYVKQPA-PGNGVGVS 393

Query: 256 GVVVSSNQGSAVPKGKIKALLQIR---DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
              V          G  +   Q R   D  +       +    +   +  + D     ++
Sbjct: 394 EWSVYLQIDGEFVAGTDQNPYQARFDQDGELQSVNGDPNGEILISDWTPKDADGTPNGAD 453

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
             PG          +          +    QY SN        +       +  +++   
Sbjct: 454 GPPGPGDNITTPIPEPPTTSAFVLDLGNTTQYGSNFGVNDQRQNGYATGRLSGLDVSDQG 513

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            L   Y +  +++     +A  N    L         W+E   S    +          I
Sbjct: 514 VLFARYTNGQSQSLGQVALASFNNTNGLSPVGE--TTWVETFESGQPIIGAPDTGTLGSI 571

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             S      V+L  EL  LI  +++Y  + K I  +D + QT++  
Sbjct: 572 KASSIEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTVINL 617



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/392 (7%), Positives = 82/392 (20%), Gaps = 10/392 (2%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLHAH--SSAIGQQ 77
                 NI NA    +                          +  + +  +     I   
Sbjct: 3   LDVTGNNIANASTVGFKSSQAQFGDLYASGFLSAGTNPIGDGVRVQDVKQNFGQGNISFT 62

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                     +     ++          +     + +  N     +   V D+   +   
Sbjct: 63  DNGLDLAINGDGFFVLNNGGEVRYSRAGQFGIDKDGFVTNNQNMRVQGFVADDDGNLSGI 122

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
                 E   +       +  +++   R       V D   +   +              
Sbjct: 123 RGDLQIETDNLAPRRTTNLRSDLNLDSRETVLERRVADMGDYTAPAGATGFPSETFEITY 182

Query: 198 LQKISEIIGI-----STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
                  + I     +     +   V+   DG +   T   +   E   +  + + +   
Sbjct: 183 ADGSVVSVPINAAGATDFSAADVVDVLNGQDGLSASATTTYEGMSEADLNAAIAAGNFSF 242

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            +    V+    +         +  I ++  P     L      LI +          S+
Sbjct: 243 DLAVGGVTVPVDTTGVTDAASLVSAINNAQAPTISASLTGGNLRLIDNRGNNVTAGFTSD 302

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN--VKNLAG 370
                              +             ++    R+    ++    +    N A 
Sbjct: 303 GPNQAPETTVGTVRPQADREITDIASTSGATNLTDSWNARNIEITNQFNPLDQRTYNHAT 362

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              + +   +S      +         V + E
Sbjct: 363 STTVYDSLGNSHEMTQFYVKQPAPGNGVGVSE 394


>gi|94267501|ref|ZP_01290900.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451978|gb|EAT02688.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 1069

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/409 (10%), Positives = 107/409 (26%), Gaps = 5/409 (1%)

Query: 72   SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
            S +                +      N      +      E+ +  L++  L  T     
Sbjct: 666  SGVAADGTDPGDLVFTVGAAGMVTIENLMDKLETHFSAGGETLTVALTDGALVFTDSSGT 725

Query: 132  EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
               +     SA++ Q +           I  +    +    +   ++  T   H+    +
Sbjct: 726  NLQINLEYGSAQKAQPLGTTEFTRSGARIGGMTNVSTTKKELISPVRAFTTEDHENRPPV 785

Query: 192  DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
                     + +  G ST      +       G ++    P      + +  TV    + 
Sbjct: 786  ITAGTTWDAVFDRHGNSTHEGQTIEFAGTNRHGASI---EPVTYTINRDDGSTVQDFLDE 842

Query: 252  IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
            +       +   G+     + +    +       FQ        V      E       +
Sbjct: 843  VSTALDADAFIDGAGRLVIRERVSDDLDFESELSFQISDYSNPAVPPDPSYEFFGPVETN 902

Query: 312  ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
             +       +    L     +          QY ++ + +               ++   
Sbjct: 903  YHAIAGSAEEDGSRLGMTASRRFEAEAMATTQYANSSTTIFQDQDGFAAGFLQSVSVDTA 962

Query: 372  PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              +  +Y +          +A       L +   N   +    +S +             
Sbjct: 963  GIITGNYSNGQVLMRAQVALADFANLQGLHKVGGNI--FRATTQSGAPVTGQPGTNGLGE 1020

Query: 432  ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            I+ +      V+L  E   +I  ++ +  ++K+I  TD+ML  L+   +
Sbjct: 1021 IAPNSLEQSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELINIKR 1069



 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/444 (9%), Positives = 103/444 (23%), Gaps = 18/444 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL +      +  +        +  NI N +   Y                    S + 
Sbjct: 1   MSLSSSLYAGISGLSTMGNSMNVLGDNIANVNTTAYNASRATFQDVLSQSVATSAGSAQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              VT  + +         + S+A       + F     MM               + R 
Sbjct: 61  GRGVTLTTVDGLFAQGSFESTSTATDMAIGGEGFF----MMRGSGSAEADMFTRAGEFRF 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N +   +    +D     ++        + +       +    I NL   +  
Sbjct: 117 DTQGNLINPAGHFIQGWQVDKDSGQIEGTI-GDINIGRATPPVPTDRIDMIVNLDSRIPR 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            T      +    +     +     D    + +  + +       +D+ +Y  D TT   
Sbjct: 176 ETTEQRLYEAWNGTNMTGVNPSPPIDANNFEYTTAVKVYDSKGAAHDVTIYF-DRTTQEN 234

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +  +  +   V   S             +        +   +    +      + 
Sbjct: 235 QWEFLVTCDPSSDLRVLEGSELQTYAPSDRYDYEEHKGAGALMYGTVDFNTAGAIEQISA 294

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            +      +    + + +  ++ +    F A+   + +    Q I          + +  
Sbjct: 295 WNVPPDGKVEPSLDTNRVRLDATDNYYSFRANFTGEEEKVDEQMIELNFGARFTGQFDEL 354

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
             R   +       +         L  +  D+         V  ++       Y +    
Sbjct: 355 RQRLVTNNGAYSEAHATTPINRETLWRNVYDANGNQMSGGDVIHVSG-FDNGGYYQELTY 413

Query: 410 WLEKNRSDSHDLHMKSQVVFNHIS 433
               N      L+          +
Sbjct: 414 TAVANVRVGDFLNKLGDAFGGTAT 437


>gi|283834455|ref|ZP_06354196.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220]
 gi|291070002|gb|EFE08111.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220]
          Length = 400

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 107/474 (22%), Gaps = 75/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI N+    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANSGTVGYKSMTTQFSAMYAGTQAMGVSVAGSA---Q 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N                           
Sbjct: 59  SISTGGSMVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFVTDKNG-----------Y 107

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            V  + + +       +  +Q                    ++++ +    I  +     
Sbjct: 108 IVNASGDYLQGYPVDDSGTLQT-----------------GTVTDIQIKTGNIPAQATDSM 150

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 D  D  + + S     +      +       D      +V +       N++ V
Sbjct: 151 TFTANFDASDETIDRTSVPFDANNSDTYTDSYTTTVYDSLGNEHSVSQYFTKTGDNTWEV 210

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               +     GV  ++                                            
Sbjct: 211 QYTFDGEAQSGVPATTLTFDPNTG------------------------------------ 234

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                 +              D      ++       QY S+ S   +  +       N 
Sbjct: 235 ------KLTDPTTPQTITFTTDEAAPISMTVDYSDCTQYGSDFSVTTNSATGYASATQNG 288

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +          +A       L     +   W++   S +  +    
Sbjct: 289 VQVDDDGKVYATYSNGERMLQGQVVLATFPDENGLQAV--SGTAWVQTGESGTPLIGTPG 346

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +S     +  V++  EL  L+  +++Y  + K+I  + ++ Q L + +
Sbjct: 347 SGSCGTLSSGMLESSNVDITNELVNLMTAQRNYQANTKVISTSTQLDQALFQAM 400


>gi|134297198|ref|YP_001120933.1| flagellar hook protein FlgE [Burkholderia vietnamiensis G4]
 gi|134140355|gb|ABO56098.1| flagellar basal body FlaE domain protein [Burkholderia
           vietnamiensis G4]
          Length = 413

 Score = 98.6 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLGSVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     Y  N     L   
Sbjct: 66  KQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    V                   + + L+        +  T +       +     
Sbjct: 126 AADKNGVV----------------STAQTVPLQAPTSNIAPTPTTKIVGQFNLNSQDVVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                +  D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFNATDSATYNYSTAIQVYDSLGGSQAVNMYFVKSAAGAWEAYAGVQGGTTTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
              +   I    + ++       G+ +  +   D         L                
Sbjct: 230 KFDSSGAITSTTLPASATPTASLGQFQFSVPTTDGSSTPQALTL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQDGYASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E   S    +     
Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLINLGGNQYA--ETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|237810461|ref|YP_002894912.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346]
 gi|237503327|gb|ACQ95645.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346]
          Length = 413

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/469 (10%), Positives = 99/469 (21%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +       +    N                    
Sbjct: 6   GLSGLVGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVN------------- 52

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                                               +      + S +     +      
Sbjct: 53  ----------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFF 90

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                     +     Q               +   ++     +N       A+      
Sbjct: 91  QMSNNGVTTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAANANGVINTA 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                      I+         + N +            + VP    F   +  +    +
Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  S N      K       +            L  +     G+ +     AG
Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAG 246

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 G F             Q ++  +    QY                 +    ++ 
Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               +  +Y +          +A  N    L+    N   ++E   S    +        
Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|91794995|ref|YP_564646.1| flagellar hook protein FlgE [Shewanella denitrificans OS217]
 gi|91716997|gb|ABE56923.1| flagellar basal body FlaE [Shewanella denitrificans OS217]
          Length = 402

 Score = 98.2 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/474 (8%), Positives = 96/474 (20%), Gaps = 73/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +   + +Q   +I  NI N+    +    +                        
Sbjct: 2   SFNIALSGLQSTTQDLNTISNNIANSSTVGFRGGRSEFAAIYNGGQAGGVSV-------- 53

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                                +                +    D           ++  +
Sbjct: 54  -----------------MSTTQNFTKGGSLTYTGRQLDMGIQGDGFFVLKGTDGANMYAR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + + +      +     +Q   A A   I+               +        A   
Sbjct: 97  AGMFHQDSQGFVVDPVGNRLQGYGASATGRIQ---------TGNAIDLQIQTASLAAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +   D  +  I  ++      +++                          +S   
Sbjct: 148 TDVALVSNLDARVAVIDPLVTPFDATKSDTFH---------------SSNTVSVYDSLGT 192

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                  ++       N    +    +                          G     D
Sbjct: 193 EHAMIQYYVKTGPNDWNVHFMMDGKDV----------------------TPAAGHKMTFD 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                               L              + QY +N +                
Sbjct: 231 SNGVLQTGKTLNLAIADPTLLKGASALSFDIAYDKSTQYAANYNNSSLRQDGFTSGELKG 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     +   Y +          +A  +    L   + N   W+  N +    +   S
Sbjct: 291 VRLDDNGLVYGTYTNGQELLQGQVALANFSNPNGLKPVSNN--AWIASNEAGQAIMGAPS 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 349 TGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNSI 402


>gi|126441055|ref|YP_001057322.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668]
 gi|126220548|gb|ABN84054.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 668]
          Length = 413

 Score = 98.2 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/469 (10%), Positives = 99/469 (21%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +       +    N                    
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVN------------- 52

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                                               +      + S +     +      
Sbjct: 53  ----------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFF 90

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                     +     Q               +   ++     +N       A+      
Sbjct: 91  QMSNNGVTTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAANANGVINTA 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                      I+         + N +            + VP    F   +  +    +
Sbjct: 137 ATVPLQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTT 186

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  S N      K       +            L  +     G+ +     AG
Sbjct: 187 SVQVFDTLGGSQNVNLYFVKSATSGQWEAYAGPAGQTPTDLGSVKFSTAGTITGTSTPAG 246

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 G F             Q ++  +    QY                 +    ++ 
Sbjct: 247 VPTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               +  +Y +          +A  N    L+    N   ++E   S    +        
Sbjct: 307 ADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|126176156|ref|YP_001052305.1| flagellar hook protein FlgE [Shewanella baltica OS155]
 gi|304412508|ref|ZP_07394114.1| fagellar hook-basal body protein [Shewanella baltica OS183]
 gi|307307167|ref|ZP_07586905.1| fagellar hook-basal body protein [Shewanella baltica BA175]
 gi|125999361|gb|ABN63436.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155]
 gi|304349150|gb|EFM13562.1| fagellar hook-basal body protein [Shewanella baltica OS183]
 gi|306910406|gb|EFN40837.1| fagellar hook-basal body protein [Shewanella baltica BA175]
          Length = 395

 Score = 98.2 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/475 (9%), Positives = 110/475 (23%), Gaps = 82/475 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI NA    +    +                        
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANASTSGFRGGRSEFASIYNG---------------- 45

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                    GQ   +      +                +    +       N    +  +
Sbjct: 46  ---------GQAGGVGVMSTSQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGNDGGAMYAR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + + +      +     +Q    +A  +I+            +  +        A   
Sbjct: 97  AGMFHKDSEGFITDPVGSRLQGYSVNATGKIQQG---------NVGDLQVQTASLAAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +   D  +        I+      +    ++   T++++++  +    +    T 
Sbjct: 148 TKVGLVSNLDARVD------PIAVAFDPKDINTYHSIGTTSVYDSLGTEHVVTQYYVKTA 201

Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
            +E      +DG  +            I                                
Sbjct: 202 PNEWTVNYTLDGTPLPDKTTLKFDSKGIL------------------------------- 230

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                   +      A  +   +             + QY +  +               
Sbjct: 231 --------DPATTKQAFDLALPNGASNLKFDINFDKSTQYAAKYNNSSLSQDGYTSGELK 282

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              L     L   Y +  ++      +A  +    L   + N   W+  N +        
Sbjct: 283 GVRLDDNGMLYGTYTNGQDQLQGQVILANFSNPNGLSAVSNN--AWVATNTAGQAITGSP 340

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           S      ++  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 341 STGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395


>gi|223039214|ref|ZP_03609504.1| flagellar hook protein [Campylobacter rectus RM3267]
 gi|222879575|gb|EEF14666.1| flagellar hook protein [Campylobacter rectus RM3267]
          Length = 543

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/543 (8%), Positives = 124/543 (22%), Gaps = 65/543 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           ++       +     S        NI N +N  Y                          
Sbjct: 1   MVRSLYNGVSGVKTQSFSMDVWAHNIANINNVGYTASIPEFKSIFYQTSFKAGNNPTQDQ 60

Query: 49  -NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             +      +         L    + +      + F  +   M        S      + 
Sbjct: 61  VGLGATGMTTALSFYKQGPLMKTDNVLDMAIGGKGFFGVTNGMDTYYTRAGSFGVNKDRY 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + +      +++ L +               S   V +    +    +L+I ++    
Sbjct: 121 LVTNQGNYVLGTQNTLTQVTPSQGAIEAFGRINSKAAVTQAYTPSADTTDLDIGDIGSQG 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG--- 224
                    +  K  SK      LD           +   +     +N        G   
Sbjct: 181 KIKLPEFLYLPTKPTSKVTFKGNLDSSLKTEPATLPLGAATYTSNIDNASRTINLRGRVT 240

Query: 225 --TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
              T+      D+           +      ID     S          + A   ++  +
Sbjct: 241 ADATITRPRKGDLITVTATDANGKTAEFSAPIDENGNWSISQKFENDFDLAAAPNLQAKI 300

Query: 283 VPI-------------------------------FQNQLDEMARVLIGSFSEKDPIAGNS 311
                                              Q     +             +  NS
Sbjct: 301 KTTKEAANQEKFVTELLNADGTKNTLELTLTKRVPQGANGAVWDAAATVKDASGAVISNS 360

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +      +   +              I ++    +    +  G + + +         G 
Sbjct: 361 KGELNFGLDGRLAGSTLSAIDNNGSQIKLDFGAPAAAGQIYSGVTSTAQAKSISIAQDGV 420

Query: 372 -------------PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                         +++  + +   ++     +        L +   N       + +  
Sbjct: 421 REGILKDYYTNDSGNILAQFTNGQVRSVAKVALYHFQNEQGLAKMGDNIYSQSANSGAAF 480

Query: 419 HDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  + ++   I+ +      V+L + L+ +I  +++Y+ + K I  +++MLQ  +E
Sbjct: 481 FYKDAGGKSIYGAKIASNTLEQSNVDLAQALTEIIVTQKAYDANAKSITTSNEMLQRAIE 540

Query: 478 GVK 480
             +
Sbjct: 541 LKR 543


>gi|119947177|ref|YP_944857.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37]
 gi|119865781|gb|ABM05258.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37]
          Length = 398

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/474 (9%), Positives = 101/474 (21%), Gaps = 77/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  N  ++Q  +I  NI N     +                            +
Sbjct: 2   SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNGGQAGGVEVSG---ITQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S     R L    +     +  D+                +++  + + + L  
Sbjct: 59  NFDRNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGNKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                         T   +    + + D       S   +    +    +     T    
Sbjct: 119 -------------YTVDAKANLQKGNIDDLAISTASLSAKATDSIEFTANFDARATPVAS 165

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A D  D         ++           +   + T       + +  D +     +  +
Sbjct: 166 AAFDPADPTSFTSSYTAQAFDSLGNAHTVSQYFINTGSNQWNIKVIADDNDVTPDPAPVI 225

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
              +  +  D   +            + A+                           E D
Sbjct: 226 EFTTEGLLADTSTIPILVSIPALGANLIAV---------------------------EID 258

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                          +           GI          +      +  G +      N 
Sbjct: 259 LTGSTQYGADFGVSTNNPNGYTAGELTGIRVEDNGMIFAQFTNGQSQLQGQLVLADFPNP 318

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L    +                P +G+   +T                          
Sbjct: 319 TALEQSNNTSWMQTFGSGTPVKGAPGSGVLGKLT-------------------------- 352

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    +   T  V+L  EL  L+  +++Y  + K I   D++ + L   V
Sbjct: 353 --------SNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQLTKALFNAV 398


>gi|170288059|ref|YP_001738297.1| hypothetical protein TRQ2_0255 [Thermotoga sp. RQ2]
 gi|170175562|gb|ACB08614.1| protein of unknown function DUF1078 domain protein [Thermotoga sp.
           RQ2]
          Length = 750

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/447 (9%), Positives = 105/447 (23%), Gaps = 29/447 (6%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
               N    T  +   +                 L  S   +          N + +   
Sbjct: 322 TVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSSGNVIYSGTVDVSGGNFTISDSD 381

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS----------AREVQKIRADADK 154
               +       + S+      +I+    +                       +   +  
Sbjct: 382 ITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVIVRDSSGNEVYNGTTTVSNGSFT 441

Query: 155 EIELEISNLRRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             + +I++   +       +  I          + +             +    S     
Sbjct: 442 ISDSDITSGNDYTVTFLSSSLTIAPGAELVIPTSGEPRFYESDNPTNFVQTDYTSPRYTT 501

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
              +     +  T++    R  N    +     +     + D     S        G + 
Sbjct: 502 AVQVYDSLGNAYTVYYEFVRLGNTTIGSESFKNAWIWRAYTDSGEPISLIDEDGGSGYVA 561

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L+   +S  PI    LD    +  G        AG                        
Sbjct: 562 GLIDFDESGRPIQYRGLDSSYNLSSGEVRTIQFDAG----------------QSGDGVVT 605

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           I+       Q+  + +        +   +     +    ++I  + +          +A 
Sbjct: 606 ITADFSGATQFSGDSTLNIPWQDGNPMGVLESFAINEQGEIIGTFSNGLTDVLGQIALAV 665

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            N    L E   +   ++    S    +          +         V+L EE + +I 
Sbjct: 666 FNNPSGLSEVGNSL--YVVSANSGVPKIGAPGSGGRGILIPGALEMSNVDLAEEFTKMIV 723

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +  + ++I   D++L  L+   +
Sbjct: 724 AQRGFQANARVITTADQILNELVNIKR 750



 Score = 69.7 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/446 (6%), Positives = 77/446 (17%), Gaps = 14/446 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           N       +  NI N +   +                  + S+    
Sbjct: 1   MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRSSQENVG 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
               +                  +     +        +        N            
Sbjct: 61  GTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAFTL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                    S     +      +                   +                 
Sbjct: 121 DSNGNLIQTSTGYKVQGWTAVQDPETGERYIDTNRPIGDLVISAGMTMPAKKTSNVRFEG 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               N      T +  D         V  +K +  +G      +    +    +     +
Sbjct: 181 NLNSNVGPGSFTITLTDDSGVDHDVRVWFEKTAGDLGTDPFSSSQRYTMRIDVNNDGTAD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                + F +              +       +   +           + D+   +  N 
Sbjct: 241 VSGYAV-FNEFGRIEEAGIYAESQVITASTDGSITGSTSLSDGTYQAVVLDNSGNVVYNG 299

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             +++               +   +          + D+ L    + +         + S
Sbjct: 300 TVDVSNGSYTISDPNIVGGNDYTVMLNSDYQTVTANTDSSLSGTTTLSDGNYNATVLDSS 359

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                         N           N Y              GI    T L      + 
Sbjct: 360 GNVIYSGTVDVSGGNFTISDSDITSGNDYTVILYSESQTTTANGIIEGTTTLSDGNYQVI 419

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISES 435
             + + ++ ++           IS+S
Sbjct: 420 VRDSSGNEVYNGTTTVSNGSFTISDS 445


>gi|313624712|gb|EFR94667.1| flagellar hook protein FlgE [Listeria innocua FSL J1-023]
          Length = 411

 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  +I     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNIKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    ++    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|289523565|ref|ZP_06440419.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503257|gb|EFD24421.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 618

 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/443 (10%), Positives = 125/443 (28%), Gaps = 8/443 (1%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ-RLLQSFEALKEMMSADDHYNN 98
            T   I   N T+        +  +  +   S ++        +       +S     ++
Sbjct: 182 STTVAIGGNNYTLAISEGSASDFLNISIGGSSYSMSLAGINQNTGLPKLSDVSPVTIGSD 241

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           S T +       L+   K+   + +      +     Q  N    + Q      +     
Sbjct: 242 SYTLHFDDETGELQ--LKDPGNNNIVWKQQISGIMDYQILNFEGDDNQTRPYLVEFTDSG 299

Query: 159 EISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
           + + + R   + + +   + +       D    +    + +  ++  +G+      +   
Sbjct: 300 DGNMVMRLWGQNSTLAWTSFEVVVPVNADGTFAVPTGGIGISGLAGNVGLRLNSTEDGKG 359

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
           +  ++        V   +   +  S   +++ +     G   +                 
Sbjct: 360 LSVSASNDGSTYEVAATL--NQRTSSIHSTKIDIYDSMGNPHTIEVAFEKIGANEWRWRA 417

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
              +   I  +    +         E    A  +     L   D    LD          
Sbjct: 418 WLPTESGIALSNNTGVIEFGSDGKLESGGTATVNIGFSSLGAEDASIKLDFSGESFGKSP 477

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I    Q+ S+ +         +  +    ++A    ++  Y +  N       +A  +  
Sbjct: 478 IDGVTQFGSSFTTKAYYQDGYQMGVLQDFSIASDGTVMGIYSNGRNSALYTLSLALFSNP 537

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L +       ++    S    +    +     ++        V+L EE S LI  ++ 
Sbjct: 538 SGLEKI--GMTAFIPTANSGLPQVVTPKEGGAGSLAGGNLEMANVDLAEEFSRLIIAQRG 595

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  + ++I  +D++L  L+   +
Sbjct: 596 FQANARVITTSDQVLDELINLKR 618



 Score = 50.0 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/385 (5%), Positives = 78/385 (20%), Gaps = 30/385 (7%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTI--------------SPENVTVVTQRSENKNMFDK 65
               +  NI N +   + +                     +   V  +           +
Sbjct: 1   MLDVVGNNIANVNTMGFKKSTVTFQDLLYETSKGATAPRENIGGVNPMQIGLGTTVAAVE 60

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +H+    +             +     +    +                          
Sbjct: 61  TIHSQ-GPLQYTGNRTDVAIQGDGYYVLNDGAQNVYSRAGNFVLDGNGNIVQSGTGYTLM 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS----------ELTVVND 175
               + +           ++  +     +++  + + +                + + N 
Sbjct: 120 GYKMSPDPQNPTQYVRGTQLVALNIPVGQKLSAKGTEVLGLQCNLDSRVDTYLPMGITNP 179

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                 A   + +            ++  IG S+   +   +   T     L +      
Sbjct: 180 NFSTTVAIGGNNYTLAISEGSASDFLNISIGGSSYSMSLAGINQNTG----LPKLSDVSP 235

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                +SYT+  +     +      +N      +       QI +      Q +   +  
Sbjct: 236 VTIGSDSYTLHFDDETGELQLKDPGNNNIVWKQQISGIMDYQILNFEGDDNQTRPYLVEF 295

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G  +    +     +       + +  ++      +            N     +  
Sbjct: 296 TDSGDGNMVMRLW-GQNSTLAWTSFEVVVPVNADGTFAVPTGGIGISGLAGNVGLRLNST 354

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCD 380
              K    +  N     ++      
Sbjct: 355 EDGKGLSVSASNDGSTYEVAATLNQ 379


>gi|160901599|ref|YP_001567180.1| hypothetical protein Pmob_0108 [Petrotoga mobilis SJ95]
 gi|160359243|gb|ABX30857.1| protein of unknown function DUF1078 domain protein [Petrotoga
           mobilis SJ95]
          Length = 702

 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/435 (10%), Positives = 105/435 (24%), Gaps = 37/435 (8%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           +       + R  +              I           L   +         P   + 
Sbjct: 305 AGTATLTGSIRVTDSAGEAVYYDPEDIDISFDASGNPTITL--NIDGTPVNFTGPASTVG 362

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +  + L +      +  L    +  A +           ++ +R          I     
Sbjct: 363 EF-NDLLTTGITSGDYTLTGLRLTGASDADTIDGQGFTGLKSVREMIQPPSGGAIRFTDL 421

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                    + I     +    +      D L    +  +  + I  N         DGT
Sbjct: 422 NNPTNFSEANYISPSVTTSTVVY------DSLGNPYNTYLKFTKIDANTWYWKAELEDGT 475

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            L++      +         ++E    F     +++ Q    P G I   +   D     
Sbjct: 476 PLYK------STADGQLLDDSAEGVIAFDSNGNIAATQWKINPDGTIDQTIGDGDDGAAG 529

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           F     E+   L  S   +                             +S       Q+ 
Sbjct: 530 FWFDPAELGAALNPSVDPQSAAGAGP--------------------VNVSINFQELSQFF 569

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +  S        + +       +     +I  + +          +A  N    L     
Sbjct: 570 AENSIAVTEQDGNAQGTLESFAINTNGQIIGSFTNGLTAPLGQVALATFNNPEGLSATGN 629

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +       + S    + +        I+        V+L EE + +I  ++ +  +++ I
Sbjct: 630 SMYAM--SSNSGLPQIGVSGVGGRGSINPGALEMSNVDLAEEFTNMIIAQRGFQANSRSI 687

Query: 466 MFTDKMLQTLLEGVK 480
              D +L  L+   +
Sbjct: 688 TTADAILNELVNIKR 702



 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/416 (8%), Positives = 91/416 (21%), Gaps = 33/416 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L           N   Q   +  NI N +   Y         +                
Sbjct: 1   MLRSMYSGITGLRNFQDQLDIVANNIANVNTVGYKGSRATFQTTLFQTLSAGNAPQNQLG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               +     ++      L    S +   +         E                    
Sbjct: 61  GTNPMQIGLGSQLASIDKLMTQGSPMSTGKA-TDLMIQGEGFFILSDGIGQYYTRAGNFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
                +  + +  +  +      ++       +   +  I+  + + +  + ++  R   
Sbjct: 120 RDYNGFFVDPASGMKLQGWTAKIDQEGNRTIDTNDPIGDIQISSGQVMAAKQTSFVRLAH 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L             K    + +  +    + +SE      +                 F
Sbjct: 180 NLNAGAGIQDTTIVVKSTTGENIPVKFSFKRDMSEENKDKNVYN----WTASVVGSEYKF 235

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  N    N  +   E +        V+ ++          ++  I   +V  + +
Sbjct: 236 AVDDGSGNLTSTNQISGKVELDDTGNVISWVNYDEDGDPLAESKISIYDINGEIVDQYGD 295

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +                          L  +  + D   +      E I ++     NP
Sbjct: 296 SVPVDINAGA--------------GTATLTGSIRVTDSAGEAVYYDPEDIDISFDASGNP 341

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +   +       F      +  + DL+     S +       + G +   T+    
Sbjct: 342 TITLNIDGTPVNFTGPASTVGEFNDLLTTGITSGDYTLTGLRLTGASDADTIDGQG 397


>gi|153011508|ref|YP_001372722.1| flagellar hook protein FlgE [Ochrobactrum anthropi ATCC 49188]
 gi|151563396|gb|ABS16893.1| flagellar basal body FlaE domain protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 426

 Score = 97.8 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/481 (9%), Positives = 109/481 (22%), Gaps = 85/481 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 30  MSLYGMMRTGVSGMNAQANRLSAVADNIANASTVGYKRAETQFSSLVLPSTGGQYNSGSV 89

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
               +   +    I                      + S                  N +
Sbjct: 90  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGADGSTFLTRAGSFVPDKNGNLVNSA 149

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L                                              LT+    I  
Sbjct: 150 GYYLLGAG-----------------------------------PNDPAGALTMAGLNIIN 174

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++             +    ++ I  +    +   ++ Y   G  +   V        
Sbjct: 175 VNSAALPPEASTSGNFTVNLPSTDQIPAAGEFNHKTSLISYNDKGEKITLDVYFTKTGAD 234

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S TV + ++   + G    +   +         +       +  +  Q   +      
Sbjct: 235 EWSVTVKNAADDAVVGGPTTLTFDPTTGDMTSAGGVA----VDLGPYGGQNLNLNLGAST 290

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +                                        Q + N         V  
Sbjct: 291 QRAGDYT----------------------------------ISQAQINGQAPSAVKGVDV 316

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +V  +                    D +  ++ NV L              R    
Sbjct: 317 ANDGSVVAIYENGTQKVLARIPLANVASPDRMTVVSGNVFLPS------ADSGDVRLGFP 370

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +V+   + ES       ++ +EL+ +I+ ++SY  ++K+     +++  L+   
Sbjct: 371 QSDGMGKVMSGTLEES-----NADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVNLK 425

Query: 480 K 480
           +
Sbjct: 426 R 426


>gi|218133669|ref|ZP_03462473.1| hypothetical protein BACPEC_01538 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991044|gb|EEC57050.1| hypothetical protein BACPEC_01538 [Bacteroides pectinophilus ATCC
           43243]
          Length = 420

 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/466 (10%), Positives = 112/466 (24%), Gaps = 52/466 (11%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80
              I  NI N +   +    + +    E     TQ +   N        ++  IG    +
Sbjct: 1   MDVIGNNIANVNTIAFK---SSSVSFSEVFYQTTQVASGPNATTGKGGQNAKQIGLGTSV 57

Query: 81  QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
            S     +   A    +N     +S   +S      N +                    +
Sbjct: 58  GSISTKVDTEGASQRTDNPFDVKLSGSGNSFFIVRSNGNTYFTRAGDFTYDASGALVTQS 117

Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200
            A  +  +  D  + ++  +  L        V +D   +    +          +     
Sbjct: 118 GANVMGWVTNDQGEIVKDVVQPL-------YVKSDEFTYTMPEQTTNLKVSGNINSSSGN 170

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
            ++  G S    +     +  S    L       I   +++ Y   +E   +  +G    
Sbjct: 171 FAKGSGTSGADGDQKGETMTLSFYDNLGYRYQATIAVTQVDKYNYHTEVTGVTKEGKAAD 230

Query: 261 SNQGSAV------PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
                          G +       D  +    +    +   +    S    I       
Sbjct: 231 LTVTFDHDISFNPTTGLLDGTDSSLDFTITGGADADSFVKDTIAVDISNLKSIG------ 284

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                                          +   ++   G        +   +     +
Sbjct: 285 -----------------------------DETKFEYIDVAGKGKAVGKMSSVGIQDDGRI 315

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           I  Y +                   L +   N       N  +   +          +  
Sbjct: 316 IASYSNGDTVVIGQIATQSFTNAAGLEKVGTNMYAAT-LNSGEFDGVGEDITSAGGSMVS 374

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  V+L  E + +I  ++ +  ++++I  +D ML+ L+   +
Sbjct: 375 GTIEMSNVDLASEFTDMITTQRGFQANSRIITVSDTMLEELINLKR 420


>gi|91785634|ref|YP_560840.1| putative flagellar hook protein FlgE [Burkholderia xenovorans
           LB400]
 gi|91689588|gb|ABE32788.1| putative flagellar hook protein FlgE [Burkholderia xenovorans
           LB400]
          Length = 503

 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/489 (8%), Positives = 101/489 (20%), Gaps = 33/489 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70
              I  NI NA+   +            N       +            +      + + 
Sbjct: 17  LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQFSQGTITST 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY-----------SKNLS 119
           + A+        F  L    S     N       +    + +               N +
Sbjct: 77  NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
           + +       N          +   +            +  + +                
Sbjct: 137 QTVPLTVPTANIAPQATTKIVAGLNLNAQDPLMLGTPAVTPTLVTGSTLTTPGATITNTA 196

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +                  + +   S          +   +G T+            
Sbjct: 197 SGTNNDSYTVNFTSPTTYTVTDTTLGTTSASATYTAGTAISLGNGQTITFNGTPATGDSV 256

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK----------IKALLQIRDSVVPIFQNQ 289
             + T  + +          +S        G                 +           
Sbjct: 257 AIAPTPVAFNQNSSSTYNYSTSTTVYDSLGGSQTVNMYFAKTSAGTWNVYAGTSTGTAQL 316

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +        G+       +G +   P  +         +   Q ++  I    QY     
Sbjct: 317 IGHANFNSSGTLLGTTDASGTATTTPFAYNFQIPTTDGSSTPQNLTLNIAGTTQYGGKDG 376

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     L  +Y +          +A  +    L+    N   
Sbjct: 377 VNSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNN--E 434

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + + ++S    +          +         V+L  EL  LI  +++Y  + + I    
Sbjct: 435 FQQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQ 494

Query: 470 KMLQTLLEG 478
            + QTL+  
Sbjct: 495 TVDQTLINL 503


>gi|221199739|ref|ZP_03572782.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M]
 gi|221208656|ref|ZP_03581656.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2]
 gi|221171467|gb|EEE03914.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2]
 gi|221179978|gb|EEE12382.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M]
          Length = 413

 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/472 (10%), Positives = 95/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +            +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T +       +     
Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  I +   +  +  + +Y              +     N     
Sbjct: 170 TKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNMYFVKTAAGTWEAYAGVQGGTTNDLGTI 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
              +   I G    S        G+ +  +   D                          
Sbjct: 230 QFDSSGAISGTTTGSPATPTAALGQFQFTVPNTDGSATP--------------------- 268

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    QY                      
Sbjct: 269 -------------------------QTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     L  +Y +          +A  N    L+    N     E   S    + +   
Sbjct: 304 TIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYA--ETAASGVPQISVPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|167579488|ref|ZP_02372362.1| flagellar hook protein FlgE [Burkholderia thailandensis TXDOH]
          Length = 413

 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/472 (8%), Positives = 96/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N               +    
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I       +            +            +     Y  N     L   
Sbjct: 66  QQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T ++      +     
Sbjct: 126 QADKNGVI----------------NTAQTVPLQAPTNNIAPTATTKISGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +   +  D         + +   +  +  + +Y              +  +        
Sbjct: 170 TNTPFNYADSTTYNFQTAVQVYDSLGGSQQVNMYFVKSAAGTWEAYAGVKNQTPTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +      I    +  +       G+ +  +   D        +L                
Sbjct: 230 TFDTSGAIKSTTLPGSTTPTTTLGQFQFTIPNTDGSATPQALKL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVTNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +  +Y +          +A  N    L+    N   ++E   S    +     
Sbjct: 304 SIGNDGKVTGNYSNGQTATLGQIVLANFNNPNGLVNVGNNQ--YVETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|224370779|ref|YP_002604943.1| FlgE [Desulfobacterium autotrophicum HRM2]
 gi|223693496|gb|ACN16779.1| FlgE [Desulfobacterium autotrophicum HRM2]
          Length = 901

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 2/151 (1%)

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                       + QY  + + +               ++A    +   Y +        
Sbjct: 753 YDGINFINDSLSSTQYARSSNTVYQDADGYSAGDLQGVDVASDGIMTGVYSNGQLIPLFR 812

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A    N  L     N     E   S S   +   +     IS +      V++ EE 
Sbjct: 813 VGLAKFLNNNGLSNSGGNLFS--ETRDSGSAITNKPGENGLGTISPNSLEMSNVDISEEF 870

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +I  ++ +  ++K I   D+M+QT++   
Sbjct: 871 VKMITTQRGFQANSKTITTVDEMMQTVINMK 901



 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/415 (7%), Positives = 90/415 (21%), Gaps = 19/415 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53
           MSL +      +   N       +  NI N +   + +  +    +              
Sbjct: 1   MSLSSSLFTGTSGLTNMGNAMQVVGNNISNVNTVGFKKGRSTFADTLSQSVATQSGTDQV 60

Query: 54  ----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
               +  + +++       +  ++         F  +++      +  N+          
Sbjct: 61  GRGMSIGAVDQSFDTGSFESTGNSTDLSIGGDGFFVVRQ-----SNSENNFYTRAGNFHF 115

Query: 110 SLESYSKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
                  N    ++    +D    E++    +            +     +   +     
Sbjct: 116 DKSGQLVNPESYLVQGWALDEDTGEDIGAINDIVLNAFTSSPKQSSTVSMITNLDSDAES 175

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
             + + N     +T      +        +   +     ++                   
Sbjct: 176 QTVVLSNSWDSGETTYMDSTNYEYQSVVKVYDALGSTHDVTVYYDKKTGTDWEYVVTCDP 235

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIF 286
            E     +              +     G ++           G ++A     +  +   
Sbjct: 236 SEDNRNLVESTDSKGLLARGTISFSESSGDILKVTMEEFTGRIGNVQANGVNNEDAINFE 295

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            + ++ MA    G   E D    +             + L +                  
Sbjct: 296 IDNVERMALDGYGFEFEFDGTQWDFATEGLPAAYANAQILYSDDQTINLTLDNTLDLESD 355

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               L      +  F +++ + +G                  +    IN   T+ 
Sbjct: 356 LRIKLDQPAVATDSFGFDINDPSGLHIQGIEGTTYLGDTANDNTTLEINAPETMT 410


>gi|167568107|ref|ZP_02361023.1| flagellar hook protein FlgE [Burkholderia oklahomensis EO147]
 gi|167574225|ref|ZP_02367099.1| flagellar hook protein FlgE [Burkholderia oklahomensis C6786]
          Length = 413

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 99/469 (21%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +            N                    
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFADMYANSVASAVN------------- 52

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                                               +      + S +     +      
Sbjct: 53  ----------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFF 90

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                     +     Q               +   ++     +N       A+      
Sbjct: 91  QMSNNGVVTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAADANGVINSA 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                      I+         + N +            + VP    F   +  +    +
Sbjct: 137 ATVPLQAPTTNIAPTATSKITGQFNLNS----------QDAVPATTPFNYSDPTSYNYTT 186

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  S N      K       +            L  +     G+ +     AG
Sbjct: 187 SVQAFDSLGGSQNVNLYFVKSSTTGQWEAYAGPSGQTPTDLGSVKFNTAGTITSTSTPAG 246

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 G F             Q ++  +    QY           +     +    ++ 
Sbjct: 247 APTTNVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLTQNGFASGVLTTFSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               L  +Y +          +A  N    L+    N   ++E   S    +        
Sbjct: 307 ADGKLTGNYSNGQTSTLGQIVLANFNNPNGLVSVGNNQ--YVETAASGVPQISAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 365 GTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|290893994|ref|ZP_06556969.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071]
 gi|290556440|gb|EFD89979.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071]
          Length = 411

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    ++    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|34498340|ref|NP_902555.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472]
 gi|34104194|gb|AAQ60553.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472]
          Length = 416

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/473 (12%), Positives = 122/473 (25%), Gaps = 58/473 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +  N AS Q  SI  N+ NA+   +    T            T           
Sbjct: 2   GFQQGLSGINAASVQLDSIGNNVANANTVGFKSSRTEFGDLYAQSIFGT----------- 50

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                  A        S  A+   MSA +  N   +  ++   +     ++        +
Sbjct: 51  -------AANSPGNGVSVLAVTANMSAGNTENTGRSLDLAINNNGFFIMNQPNGTQTYSR 103

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                        N+    +Q    +   + ++               N  I   T S  
Sbjct: 104 DGQFQVNSQGYLVNSYGAYLQGYGVNTSGQPQVGPLQ-----------NLQITNTTISPQ 152

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                     +     +  + +++ V   +         T +++++          S   
Sbjct: 153 ATSQISWPVQL---NSNATVPVNSPVNPTDPTTYNWPSPTVVYDSLGNSHQVTLYYSLAS 209

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS +   +     V     +    G                                + +
Sbjct: 210 TSATGNTWTVTPYVDGAPATIPGGGS------------------------GNTNFSVKFN 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +   P            +   Q ++  +  + Q   N        + S   L   
Sbjct: 246 NNGSLANTTPANVNLTFNTTNGSSTPQTVAINLTGSNQIAQNYGTGTITQNGSAPGLLTG 305

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++A    +   + +S  K      +A       LL    N   W +   S    ++   
Sbjct: 306 VSIASNGVVQATFSNSQTKTLGQVALATFVNPQGLLNLGGNQ--WQQSGNSGPATVNQPG 363

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 ++        VNL  EL  +I  ++ Y  + + I   D ++QTLL  
Sbjct: 364 TGNAGTLTAGSVEDSNVNLTNELVNMITAQRYYQANAQTIKTQDTLIQTLLNI 416


>gi|323495371|ref|ZP_08100448.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG
           20546]
 gi|323310294|gb|EGA63481.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG
           20546]
          Length = 568

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 100/340 (29%), Gaps = 3/340 (0%)

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
             ++ ++  +  K        + +  S+   +   I     +  ++      R V     
Sbjct: 228 DEKIPQLMDELGKLATSFSYEVNKLQSQGLDLRGNIGGLIFTDVNSEVVAKSRVVTSSNS 287

Query: 202 SEIIGI---STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
              + +    T      +  +  + G         +     +   +++ +   I I   +
Sbjct: 288 EAELAVFIEDTSQLIGGEYSLQYTGGDYYITRPSGEQFIVPVVDNSISLDGIRIDIRQDL 347

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
            S  +    P     A +Q+  +       Q  E +       ++             + 
Sbjct: 348 ESGERVLLRPTRSGAAQMQMETNDPSDIAAQSYEASTTFAQGKAKFSIAQAGDLREFEVI 407

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
           I+   K       +G               +       ++   L N K  A         
Sbjct: 408 ISPDGKQFAVTDTKGNVLLQPQAYPPSGAVTVQGTSFELTDGALPNDKFTANLVPSEGDN 467

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +      I       +   T+L+   N    +    S +  L   S++      E  ++
Sbjct: 468 GNLLKMQNIQTDKKLNDGESTILDIYHNLNTDVGLQMSTASRLTDVSRLEKEAAQERVAS 527

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             GVNL EE + ++K +Q+Y  S++++   +    T+L  
Sbjct: 528 ISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILAL 567



 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 108/293 (36%), Gaps = 7/293 (2%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V   R          L+  ++    +   +    +   M +           +++ 
Sbjct: 1   MGVHVEKVRRSWDQFAVNELNVSTTNYAHKVDDEGNLEMLSSMLSSVASKK-IPENLNEW 59

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            D ++S + + ++    K V++ A  + QN N     +++     +K+++L I  + +  
Sbjct: 60  FDGVKSLADSPNDVGARKVVLEKANLITQNLNDFHETIRRQSDVTNKKLDLGIERVNQLA 119

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTSDGTT 226
            E+  ++  +          +D +D  + L+ ++SE   ++   R N     ++  +G T
Sbjct: 120 LEIRDLHRLMMRTP---GPHNDLMDTHEKLVAELSEYTKVTVTPRKNAEGFNIHIGNGHT 176

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L          + ++ Y    +     I+G  + +     +  GKI A+L +RD  +P  
Sbjct: 177 LVSGTEAS-ELKMIDGYPDVHQRRLAMIEGKGIKAITTKDI-DGKIGAMLSMRDEKIPQL 234

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            ++L ++A       ++      +     G  I   +        + ++ +  
Sbjct: 235 MDELGKLATSFSYEVNKLQSQGLDLRGNIGGLIFTDVNSEVVAKSRVVTSSNS 287


>gi|83719411|ref|YP_440801.1| flagellar hook protein FlgE [Burkholderia thailandensis E264]
 gi|167617585|ref|ZP_02386216.1| flagellar hook protein FlgE [Burkholderia thailandensis Bt4]
 gi|257140548|ref|ZP_05588810.1| flagellar hook protein FlgE [Burkholderia thailandensis E264]
 gi|83653236|gb|ABC37299.1| flagellar hook protein FlgE [Burkholderia thailandensis E264]
          Length = 413

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/472 (8%), Positives = 95/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N               +    
Sbjct: 6   GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I       +            +            +     Y  N     L   
Sbjct: 66  QQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T +       +     
Sbjct: 126 QADKNGVI----------------NPAQTVPLQAPTNNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +   +  D         + +   +  +  + +Y              +  +        
Sbjct: 170 TNTPFNYTDSTTYNFQTAVQVYDSLGGSQQVNMYFVKSAAGTWEAYAGVKNQTPTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +      I    +  +       G+ +  +   D        +L                
Sbjct: 230 TFDTSGAIKSTTLPGSTTPTTTLGQFQFSIPNTDGSATPQALKL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVTNLAQDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +  +Y +          +A  N    L+    N   ++E   S    +     
Sbjct: 304 SIGNDGKVTGNYSNGQTATLGQIVLANFNNPNGLVNVGNNQ--YVETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|46906948|ref|YP_013337.1| flagellar hook protein FlgE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091659|ref|ZP_00229455.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str.
           4b H7858]
 gi|217965205|ref|YP_002350883.1| flagellar hook protein [Listeria monocytogenes HCC23]
 gi|226223328|ref|YP_002757435.1| flagellar hook protein FlgE [Listeria monocytogenes Clip81459]
 gi|254824023|ref|ZP_05229024.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194]
 gi|254853099|ref|ZP_05242447.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503]
 gi|254932023|ref|ZP_05265382.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262]
 gi|300764509|ref|ZP_07074502.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017]
 gi|46880214|gb|AAT03514.1| putative flagellar hook protein FlgE [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019978|gb|EAL10715.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str.
           4b H7858]
 gi|217334475|gb|ACK40269.1| flagellar hook protein [Listeria monocytogenes HCC23]
 gi|225875790|emb|CAS04493.1| Putative flagellar hook protein FlgE [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606448|gb|EEW19056.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503]
 gi|293583575|gb|EFF95607.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262]
 gi|293593251|gb|EFG01012.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194]
 gi|300514863|gb|EFK41917.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017]
 gi|307570236|emb|CAR83415.1| flagellar hook protein [Listeria monocytogenes L99]
 gi|332311122|gb|EGJ24217.1| Flagellar hook protein FlgE [Listeria monocytogenes str. Scott A]
          Length = 411

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    ++    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|254830312|ref|ZP_05234967.1| flagellar hook protein FlgE [Listeria monocytogenes 10403S]
          Length = 411

 Score = 97.4 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    ++    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|307731363|ref|YP_003908587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003]
 gi|307585898|gb|ADN59296.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003]
          Length = 502

 Score = 97.0 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/488 (10%), Positives = 104/488 (21%), Gaps = 32/488 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----------RSENKNMFDKVLHAH 70
              I  NI NA+   +            N                    +      + + 
Sbjct: 17  LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEVQQQFSQGTITST 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS----KNLSEDILGKT 126
           + A+        F  L    S     N       +    + +          S  I+   
Sbjct: 77  NQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINTA 136

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                     N    A        + + +  L +       +            T +   
Sbjct: 137 QTVPLSVPTANIAPKATTNISAGLNLNAQDPLMLGTPSVTANASNTGTLTTPGATITNTA 196

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           +    D   V     +      T +  +            L        N       +  
Sbjct: 197 SGTNNDNYTVTFTSATTYTVTDTTLGTSTTGTYNAGSPIQLGNGQTVTFNGVPATGDSYA 256

Query: 247 SESNPIFIDGVVV----------------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               P+  +                     S   +            +   V       +
Sbjct: 257 IAPTPVAFNQNSSSTYNYSTSTTVYDTLGGSQTVNMYFAKTSAGTWDVYAGVSTGTATLV 316

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                   G+       +G +   P +F         +   Q ++  I    QY      
Sbjct: 317 GHANFNSSGTLLGTTDASGTATTTPYVFNFSVPTTDGSATPQALTLNIAGTTQYGGKNGV 376

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                            +     L  +Y +          +A  +    L+    N   +
Sbjct: 377 NSLQPDGYAAGTLTSFTIGADGTLTGNYSNQQTAALGQIALANFSNQNGLVNLGNNV--F 434

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            + ++S    +          +         V+L  +L  LI  +++Y  + + I     
Sbjct: 435 QQTSQSGVAQISAPGSTNHGVLQGGAVENSNVDLTSQLVDLITAQRNYQANAQTIKTQQT 494

Query: 471 MLQTLLEG 478
           + QTL+  
Sbjct: 495 VDQTLINL 502


>gi|16799780|ref|NP_470048.1| flagellar hook protein FlgE [Listeria innocua Clip11262]
 gi|16802739|ref|NP_464224.1| flagellar hook protein FlgE [Listeria monocytogenes EGD-e]
 gi|47095263|ref|ZP_00232874.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|116872086|ref|YP_848867.1| flagellar hook protein FlgE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|224498779|ref|ZP_03667128.1| flagellar hook protein FlgE [Listeria monocytogenes Finland 1988]
 gi|224501998|ref|ZP_03670305.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-561]
 gi|254829354|ref|ZP_05234041.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165]
 gi|254900067|ref|ZP_05259991.1| flagellar hook protein FlgE [Listeria monocytogenes J0161]
 gi|254911380|ref|ZP_05261392.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935707|ref|ZP_05267404.1| flagellar hook protein FlgE [Listeria monocytogenes F6900]
 gi|255027496|ref|ZP_05299482.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-003]
 gi|16410086|emb|CAC98775.1| lmo0697 [Listeria monocytogenes EGD-e]
 gi|16413157|emb|CAC95937.1| lin0705 [Listeria innocua Clip11262]
 gi|47016334|gb|EAL07256.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|116740964|emb|CAK20084.1| flagellar hook protein FlgE, putative [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|258601767|gb|EEW15092.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165]
 gi|258608290|gb|EEW20898.1| flagellar hook protein FlgE [Listeria monocytogenes F6900]
 gi|293589317|gb|EFF97651.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|313620066|gb|EFR91579.1| flagellar hook protein FlgE [Listeria innocua FSL S4-378]
          Length = 411

 Score = 97.0 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    ++    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|289666054|ref|ZP_06487635.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 223

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 82/226 (36%), Gaps = 14/226 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
           ++ +   +      +  +++  N+ N + + Y R+                      +  
Sbjct: 2   SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAYVGNGAKITD 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +    L      + + + L S     + + ++     +     S   DS  + 
Sbjct: 62  VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTA--TNVAGLWSNFFDSTSAV 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S N S     ++++D+   +   F     ++  +  + +  +   +  + R   ++  +N
Sbjct: 120 SSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKLN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             I    ++++ A D LDQRD L+ K+    G + ++++   M V+
Sbjct: 180 GTI--GNSAQNAAPDMLDQRDALVTKLVGYTGGTAVIQDGGFMNVF 223


>gi|21672610|ref|NP_660677.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008451|sp|Q8K9K0|FLGK_BUCAP RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|21623241|gb|AAM67888.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 544

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/547 (10%), Positives = 163/547 (29%), Gaps = 80/547 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENA--------DNKNYVRRDTMTTISPENVTVVT 54
           + ++        +       +    I N+        +   +V      +     V +  
Sbjct: 1   MSSILTSTVTGIDAIKILINNTADKIINSKYKDEIKHNV--FVENTVDESNFNAGVKIKK 58

Query: 55  QRSENKNMFDKVLHAHS-SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              +  +   +     S     +Q  ++ +  L+++     +        I++L  S+E+
Sbjct: 59  IYDDYNDFLKEEKRKISERVQDEQTKIEEYLKLEDLFGEKSNIFTLL---INQLYSSIEN 115

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
              N   ++  + + +N   ++        ++  +  D  + I+ +I      ++++   
Sbjct: 116 DIVNNHGNVFNENIENNLNTIIHELKNFDEKLSFLERDVKESIKEKIKQANILINKIYDT 175

Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           N  I+F   ++       F+D+RD L+ ++++IIG+  I   N+   V  ++G  + +  
Sbjct: 176 NIDIRFFPTAQLPNRIDSFIDKRDKLIDELNDIIGVKVIK-ENSTFKVCLNNGMCIIDDY 234

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            +       +       S   F D           +P   + ALL  R   +   +N++ 
Sbjct: 235 NKKNLMTLTSDTDDKYISVGYFDDNEQRLKKIEHMIPSASLGALLTFRREDLQNAKNKIG 294

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG------------------ 333
           ++      S +    +  +     G  +            Q                   
Sbjct: 295 QLTINFADSINSVHTLGYDILGNIGKQVFKISNPEIISSSQNQSYLPTSIKWVDTADAQD 354

Query: 334 ------------------ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                                 +  +   + N +++   G   K    + +         
Sbjct: 355 TNYIVFLKNNHWTVTRLRDHSVVEPDIYQQDNNTYITFDGIEFKIEGNDAEGNMYMIKPY 414

Query: 376 NHYCDSFNKNFIFDPVAGINTN--------------------------VTLLEYARNSIG 409
           +   +      I + +  I+++                           TL E     + 
Sbjct: 415 SKTLNELELLIIKNDLFSISSSDDLNQKNRNNAIKIQHLHQEKIVNKKETLYESYLRFLK 474

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +    +D  +     + +   ++    +    ++ E    L   ++ Y  + K++   +
Sbjct: 475 SISYKCNDLEEKVPFKRNMIEILNNKKLSESD-DMYENYQNLNYEQKCYLANVKVLKMAE 533

Query: 470 KMLQTLL 476
            +   ++
Sbjct: 534 TIFDEIV 540


>gi|221215571|ref|ZP_03588534.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1]
 gi|221164559|gb|EED97042.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1]
          Length = 413

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/472 (9%), Positives = 93/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +            +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T +       +     
Sbjct: 126 AADKNGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNMYFVKTAAGTWEAYAGVQGGTTKDLGTI 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
              +   I      S        G+ +  +   D                          
Sbjct: 230 QFDSSGAISSTTTGSPATPTAALGQFQFTVPNTDGSATP--------------------- 268

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                    Q ++  +    QY                      
Sbjct: 269 -------------------------QTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     L  +Y +          +A  N    L+    N     E   S    + +   
Sbjct: 304 TIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYA--ETPASGVPQISVPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|284801027|ref|YP_003412892.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578]
 gi|284994169|ref|YP_003415937.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923]
 gi|284056589|gb|ADB67530.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578]
 gi|284059636|gb|ADB70575.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923]
          Length = 411

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 120/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L            + ++     +  + S
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGELTNPDALKNIQINSTVNGKQVNMSLNLS 273

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  N                                                    
Sbjct: 274 GLTNYGTNQ--------------------------------------VFSPTSDGKGAAT 295

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y D          VA  +    L++       ++    S      
Sbjct: 296 VKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGNG--EYVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|315281358|ref|ZP_07869998.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120]
 gi|313614997|gb|EFR88501.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120]
          Length = 411

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    +L    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YLPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|167835111|ref|ZP_02461994.1| flagellar hook protein FlgE [Burkholderia thailandensis MSMB43]
          Length = 413

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 94/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N               +    
Sbjct: 6   GLSGLAGASSNLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I       +            +            +     Y  N     L   
Sbjct: 66  QQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLSLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             D    +                +  + + L+        +  T ++      +     
Sbjct: 126 QADKNGVI----------------NTAQTVPLQAPTNNMAPTATTRISGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                D  D         + +   +  +  + +Y              +  +        
Sbjct: 170 TKTPFDYADSTTYNFQTAVQVYDSLGGSQQVNMYFVKSAAGTWEAYAGVKNQTPTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +      I    ++ +       G+ +  +   D         L                
Sbjct: 230 TFDTSGAIKSTTLAGSTTPTTTLGQFQFSIPNTDGSATPQALTL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVTNLAPDGFASGTLTTF 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     L  +Y +          +A  N    L+    N   ++E   S    +     
Sbjct: 304 TIGNDGKLTGNYSNGQTATLGQIVLANFNNPNGLVNIGNNQ--YVETAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQAVDQTLINL 413


>gi|120554033|ref|YP_958384.1| hypothetical protein Maqu_1105 [Marinobacter aquaeolei VT8]
 gi|120323882|gb|ABM18197.1| protein of unknown function DUF1078 domain protein [Marinobacter
           aquaeolei VT8]
          Length = 637

 Score = 97.0 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/418 (10%), Positives = 104/418 (24%), Gaps = 6/418 (1%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   +S  G                      ++P     +   SLE  ++ +++  
Sbjct: 223 VTATARTAASLTGLTD--SDVSGATNFRLEIRIDGSAPIPLNLENVSSLEDVAEAINDTS 280

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                    ++           +        +    +        +      +       
Sbjct: 281 DNAISASVVDDDEDPSTPDVLRIIHSGGQPLEVAYGDAPTGTPLTNNQQYDGEVFVTTDR 340

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +              +   +    ++      +      +  TT+F+++       +   
Sbjct: 341 NVEQVTTDSGSNAFEVAFNATPFTVTNEFNPIDQRTYNHATSTTIFDSLGNSHELTQFYV 400

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              +  +        +     G  V          + D    +     D    ++I  + 
Sbjct: 401 KEPSPGNGVGQSQWSIYLQIDGELVGGTDQTPYTALFDQDGQLESINGDPNGELIITDWV 460

Query: 303 EKDPIA--GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            KDP      ++  P           +          +    QY +         +    
Sbjct: 461 PKDPSGDPNGADGPPANPGDVVSPIPEPATSSAFVVNLANTTQYGAAFGVNDQQQNGYTT 520

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  +++    +   Y +  +K+     +A  N    L         W+E   S    
Sbjct: 521 GRLSGLDVSDQGVIFARYTNGQSKSLGQVALAAFNNTDGLSPVGD--TTWVETFESGQPV 578

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +          I  S      V+L  EL  LI  +++Y  + K I  +D + QT++  
Sbjct: 579 IGAPDTGTLGSIKASSVEDSNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIINL 636



 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/448 (8%), Positives = 93/448 (20%), Gaps = 20/448 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFD 64
            FN   +    AS        NI NA    +                          +  
Sbjct: 2   AFNTGLSGLRAASVDLDVTGNNIANASTVGFKSSKVQFGDLYASGFLSAGTNPIGDGVRV 61

Query: 65  KVLHAH--SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           + +        I             +     ++          +     E Y  N     
Sbjct: 62  QDVKQSFGQGNISFTDNGLDMAISGDGFFILNNGGEIRYSRAGQFGIDKEGYVVNNQNMR 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +     D+   +         E   +       ++ +++   R       + D      A
Sbjct: 122 VQGYTADDDGNLSGIRGDLQIETDNLAPRRTTNLQTDLNLDSRETVLERRIRDFDPIALA 181

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
               +       D         I  +    +    +      T    T          + 
Sbjct: 182 DLQGSGFTFGYSDGTSDYTVPQIDATASASDAAIAINAAPGVTATARTAASLTGLTDSDV 241

Query: 243 YTVTSESNPIFIDGVVVSS---------------NQGSAVPKGKIKALLQIRDSVVPIFQ 287
              T+    I IDG                       ++        +    D   P   
Sbjct: 242 SGATNFRLEIRIDGSAPIPLNLENVSSLEDVAEAINDTSDNAISASVVDDDEDPSTPDVL 301

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             +    + L  ++ +       + N           D + +     S +      + + 
Sbjct: 302 RIIHSGGQPLEVAYGDAPTGTPLTNNQQYDGEVFVTTDRNVEQVTTDSGSNAFEVAFNAT 361

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P  + +  +   +  +N        D + +      + ++ +P  G     +        
Sbjct: 362 PFTVTNEFNPIDQRTYNHATSTTIFDSLGN-SHELTQFYVKEPSPGNGVGQSQWSIYLQI 420

Query: 408 IGW-LEKNRSDSHDLHMKSQVVFNHISE 434
            G  +       +            I+ 
Sbjct: 421 DGELVGGTDQTPYTALFDQDGQLESING 448


>gi|255521910|ref|ZP_05389147.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-175]
          Length = 411

 Score = 97.0 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/478 (10%), Positives = 123/478 (25%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV------- 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +      K      D+   SPT        +L+     ++ D 
Sbjct: 54  -------AGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDN 106

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G  ++   +      + +    Q+ +       +   + L   L  + +  ++     A
Sbjct: 107 AGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIPGEA 166

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +K+ +             +S  I +    ++     +   D       +  ++     ++
Sbjct: 167 TKNGS-------------LSGNIPLDWGEKDTISSALSVYDNAGGKHKLQVNMKAATPDA 213

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S    I +DG  ++      +       L        P     +   + V     +
Sbjct: 214 SGNVSYEYEIQMDGKALTPPVTGTLNYNAQGEL------TNPDALKNIQINSTVNGKQVN 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++G +        +           +  + T         +   +     ++    
Sbjct: 268 MGLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATF 327

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L    +                                    ++    S      
Sbjct: 328 SNEDGLVKMGNGE----------------------------------YVPGLSSGDAVYG 353

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 354 VAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|77920039|ref|YP_357854.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM
           2380]
 gi|77546122|gb|ABA89684.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM
           2380]
          Length = 413

 Score = 97.0 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 118/342 (34%), Gaps = 20/342 (5%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------N 49
           MS L++     Q++ +           ++ NA N    R+    +  P            
Sbjct: 1   MSDLISSLQSGQSVPSVNRTGREITDNDVANAKNG--SRQPAQISQPPSLAAHGDFTARA 58

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                      N+    L +  S  G+        A  E +      +      ++ L D
Sbjct: 59  AVGSGIARAENNLITNQLVSRRSGYGEASAQAGALAKLEGIICAPASD--LCSTMAALFD 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             ++++         + V+   +++   F    RE+ +++A+ D++I   + +L + L +
Sbjct: 117 GRQAFASPPEPGREREKVLATGKQLTDTFRQMDRELAEVQAEIDQDIASAVDDLNKQLMQ 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  V+  I  + A  + A    D+R+ LLQ ++E +GI     +   + V    G  L  
Sbjct: 177 IGDVDTRIVTREAGGNPADTLRDERNRLLQTVAETVGIQYNEMDTGGVSVQLPSGAPLVM 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +           S         + +     S++  +    GKI  L+ +RD  +   +  
Sbjct: 237 SGD-----VGCFSSECREGKVLLSLSHGATSTDLSTNDLGGKIGGLMTVRDETIEKTRTA 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           LD++A  +       D      +   G    +G    +    
Sbjct: 292 LDQLAEEIAARVDTIDSSQVVMDGNTGQDFFNGATSSNGSTT 333



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 34/104 (32%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           D      D       F+     N + TLLE  R     +    S +       +     +
Sbjct: 307 DSSQVVMDGNTGQDFFNGATSSNGSTTLLERYRQLAAGIRIEVSRNTTALESDEDSLIQL 366

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   G + +EE+  L + +  Y  + K +     ML +LL
Sbjct: 367 QNLQDTIAGASPEEEMMLLSQYQGGYQTAVKSLSLVQGMLDSLL 410


>gi|220913724|ref|YP_002489033.1| hypothetical protein Achl_2983 [Arthrobacter chlorophenolicus A6]
 gi|219860602|gb|ACL40944.1| protein of unknown function DUF1078 domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 390

 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/378 (10%), Positives = 100/378 (26%), Gaps = 7/378 (1%)

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             ++   + N   ++       +A +     +   +     +  A      +I    R  
Sbjct: 15  HQTMLDVTGNNIANVNTTGFKASATQFQDTLSQMTQAAAAGQDGAAGSNPAQIGLGVRVA 74

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
              T         T    D     D   +  +        +     +++  + + DG  L
Sbjct: 75  GISTNFGQGSAQSTGRGSDMMISGDGFFITGKGAQNFYTRAGAFEPDSEGRLVSPDGGIL 134

Query: 228 FETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
                 + +         +    N          ++    +P       +  R   V   
Sbjct: 135 QGWTAANGVLNTGGPLGNIVLSPNTTSPATATTRTSLEGNLPSDAAVGTVVERQVKVFNA 194

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN----P 342
                 +      + +  D    ++    G                     I V+     
Sbjct: 195 DGAARTLNLTFSSTGAGWDVAGADANGATGTSAMTFQNGALTSGGTMAVGGITVDLAAVT 254

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
            Y    +      + S+        LA    L+  + +   +      +A       L +
Sbjct: 255 GYAGMSTLTVGTRNGSEAGKLESYTLAADGSLVGSFSNGSREVLARVALARFANPGGLEK 314

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              +   ++    S +  +    Q     ++        V+L +E + LI  ++ +  + 
Sbjct: 315 AGGS--SYVATGNSGAAQVGTPGQAGMGTLATGSLEMSNVDLSQEFTNLIVAQRGFQANA 372

Query: 463 KLIMFTDKMLQTLLEGVK 480
           ++I  +D++LQ L    +
Sbjct: 373 RIITTSDEVLQELSNLKR 390



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/342 (6%), Positives = 58/342 (16%), Gaps = 21/342 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +              NI N +   +    T    +   +T      ++   
Sbjct: 1   MLRSLYSGISGLRAHQTMLDVTGNNIANVNTTGFKASATQFQDTLSQMTQAAAAGQDGAA 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                             +    +              +          +          
Sbjct: 61  GSNPAQIGLGVRVAGISTNFGQGSAQSTGRGSDMMISGDGFFITGKGAQNFYTRAGAFEP 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E    +    IL                 +   +  I    +       +        
Sbjct: 121 DSEGRLVSPDGGILQGW------TAANGVLNTGGPLGNIVLSPNTTSPATATTRTSLEGN 174

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L                 +     R + L   S   G      + N     ++   T   
Sbjct: 175 LPSDAAVGTVVERQVKVFNADGAARTLNLTFSSTGAGWDVAGADANGATGTSA--MTFQN 232

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                     +   TV   +   +     ++    +    GK+++     D  +    + 
Sbjct: 233 GALTSGGTMAVGGITVDLAAVTGYAGMSTLTVGTRNGSEAGKLESYTLAADGSLVGSFSN 292

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
                   +      +P                         
Sbjct: 293 GSREVLARVALARFANPGGLEKAGGSSYVATGNSGAAQVGTP 334


>gi|242280400|ref|YP_002992529.1| hypothetical protein Desal_2938 [Desulfovibrio salexigens DSM 2638]
 gi|242123294|gb|ACS80990.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 528

 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/533 (9%), Positives = 113/533 (21%), Gaps = 63/533 (11%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------- 46
            +    A     +       I  N+ N +   Y   DT                      
Sbjct: 3   FSSMYTAATGVKSHGVLLQQIGANLANVNTTAYKSGDTFLETLASQSSGKANSGIVSGGI 62

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               +        +   N  +      +S+       Q F  + +        N S    
Sbjct: 63  STPGQIGLGTRVATTRINFKEGSFETTNSSTDIAIGGQGFFRVAD-----PVSNASRYTR 117

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                        +  ++IL    ID+   +          +++       +I +  S+ 
Sbjct: 118 AGSFHFDKNGQLVDSHKNILQGYKIDDDGNIGSTSQNIVLPMKEETDTYGNKIMVVKSDP 177

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
           +   S     N        S  +   F              +       N++  +   + 
Sbjct: 178 KGTDSVTMRTNLDSGAVDNSSSEDSPFFSLLQEWDGTKDTPLTADKYEYNSSIQIYDDNG 237

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                      +  +  +S     E       G   S+  G++     +   L       
Sbjct: 238 NKHDLVVYFDKVINDGDSSDKRHWEYIVTVPPGEDASALTGTSGAGLVMAGTLTFSGDGA 297

Query: 284 ------------------------------------PIFQNQLDEMARVLIGSFSEKDPI 307
                                                         +   I         
Sbjct: 298 LLNQSAFTLAAGSADGKDLANWEQATLNSNGQPTFSVTLSGASGTASAQTISLDMGITSG 357

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +           G                     Y  + S +        +      +
Sbjct: 358 TDSWNTTGVTAADIGSNASSLPGMVDGKLNALATTDYYGSSSTISQSQDGFGEGYLQNVS 417

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
            +    +   + +  +       +        L     N         S      +  + 
Sbjct: 418 FSPDGIMSALFSNGMSAELYQVNLYNFKNEFGLRREGSNYFS--ATIDSGEAIQGVARKD 475

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               +  +   T  V+L +E +++I  ++ +  ++K I  TD M+ T L   K
Sbjct: 476 GLGSVVSNSLETSNVDLADEFAYMILTQRGFQANSKGITTTDSMINTALGIKK 528


>gi|296186750|ref|ZP_06855152.1| hypothetical protein CLCAR_2214 [Clostridium carboxidivorans P7]
 gi|296048787|gb|EFG88219.1| hypothetical protein CLCAR_2214 [Clostridium carboxidivorans P7]
          Length = 160

 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 46/99 (46%)

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
            N     + +    + +TL  Y ++++  L     ++         +    ++S  +  G
Sbjct: 61  VNSKLGVNAIINKTSGMTLDSYFKDTVDRLGIQEQEAKKTVTNQASLLAGFTQSRDSVSG 120

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V+L EE++ L++ +  Y  + KLI   D++L  ++ G+K
Sbjct: 121 VSLDEEMANLVQFQHCYQANAKLISTVDQLLDVVINGLK 159


>gi|320179224|gb|EFW54182.1| Flagellar hook protein FlgE [Shigella boydii ATCC 9905]
          Length = 389

 Score = 96.6 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/465 (9%), Positives = 102/465 (21%), Gaps = 80/465 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                            +N          T+F++     +      
Sbjct: 166 SVNA------------------------FDASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D    +     A+                      L   A  ++ S  
Sbjct: 202 KTGDNNWEVYTQDSSDPTDTADRAMT---------------------LVFNANGVLTSNP 240

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            ++   G                   +        +    Q     + +    +  K   
Sbjct: 241 TENITTGAING--------------AEPATFSLSFLNSMQQNTGANNIVVTTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                 F  ++        V+L +EL  +I  +++Y  + + I  
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKT 389


>gi|224437581|ref|ZP_03658537.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818]
          Length = 718

 Score = 96.6 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/453 (11%), Positives = 121/453 (26%), Gaps = 10/453 (2%)

Query: 31  ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ-SFEALKEM 89
                        + +     V +  +    +    L   +         Q   E   +M
Sbjct: 273 VSTIGINGEKVSFSNNSAITGVSSIVAAQNAI--NSLRDKTGVSAYVDAGQLRIENRNQM 330

Query: 90  MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
              +   N   T   + +  +     ++++      T  ++A+     F T+      I+
Sbjct: 331 DGGEKVKNIRITADGTGVFQNFVKGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQ 390

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            DA+     E +      S    +N    F+  +  DA    D++  L   ++     + 
Sbjct: 391 YDANMIKNPEKNYQESTASVAVTLNRWGMFEITNGDDA---DDEQRNLSLYVTSHFSDNV 447

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                        +  +L E        +   +   TS      +        +      
Sbjct: 448 TNNVLFKETFKALNTASLIEGGAAVNTGKINKATHATSVDIVDSLGSKHNIRFEFWKTGD 507

Query: 270 --GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                +A++      V     + +          S+      N   +             
Sbjct: 508 AVWSFRAVVPEPAQFVGGSATKPNVFEGGRATFNSDGSLSGMNPPVLQFDPKNGSKGPQR 567

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
            +L  G +E+                  +  +              L+  + +  +    
Sbjct: 568 LELKFGANESFGGLTSVDKISETYAINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALA 627

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A    N  L     N         S    +   +      +S S      V+L   
Sbjct: 628 QVALANFANNTGLQAEGGNVFSQTGN--SGEPMIGAANTGRRGGVSGSKLEMSNVDLSRS 685

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 686 LTQLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/470 (7%), Positives = 93/470 (19%), Gaps = 40/470 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L       +              NI N +   +                          
Sbjct: 1   MLRSLWSGVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGL 60

Query: 49  NVT-------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K                      F  +     + D       
Sbjct: 61  GGQNDFSIGLGVGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFII-----SPDRGTTHNY 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +               ++   V    E       +     +       + I+++  
Sbjct: 116 TRNGEFLFDANGNLVTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPG 175

Query: 162 NLRR-----FLSELTVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
            +        ++    +N     D ++   A    A    D    +      ++ +   +
Sbjct: 176 MVMPARATKTITLRANLNAGRHIDQMQEIAALDSTARTAADGIAPVYDSRGVLMQVGEDM 235

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
               +                        +    T E + I I+G  VS +  SA+    
Sbjct: 236 GVLFNDDGDAFALNENQGIWMSYKTAVIKHDTVATDEVSTIGINGEKVSFSNNSAITGVS 295

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG----NSENVPGLFIADGIKDLD 327
                Q   + +         +    +   +      G    N                 
Sbjct: 296 SIVAAQNAINSLRDKTGVSAYVDAGQLRIENRNQMDGGEKVKNIRITADGTGVFQNFVKG 355

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
            +           +    S     R    +     ++   +            S      
Sbjct: 356 EEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQYDANMIKNPEKNYQESTASVAVTLN 415

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +  I       +  RN   ++  + SD+   ++  +  F  ++ +  
Sbjct: 416 RWGMFEITNGDDADDEQRNLSLYVTSHFSDNVTNNVLFKETFKALNTASL 465


>gi|269792937|ref|YP_003317841.1| hypothetical protein Taci_1328 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100572|gb|ACZ19559.1| protein of unknown function DUF1078 domain protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 636

 Score = 96.3 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 111/397 (27%), Gaps = 14/397 (3%)

Query: 85  ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
            L ++ +A      S      KL  +  + S  +    L    + + ++ + N      E
Sbjct: 253 NLTQITTAGAFTGASYDPATGKLTVTDGTNSSTVDLAALMDFQVLSVKDALNNTYYYLAE 312

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
              +    DKE+ L   +     S    +          +    D     ++L    S  
Sbjct: 313 FNDVATTGDKELVLWGPD----ASAGGAMTRYSVTVPTRRDGTFDLSAATNLLAAAQSPT 368

Query: 205 IG-ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
              ++     +   +V     TT+     R  +          S  N   ++      + 
Sbjct: 369 GNAVTVQATTDGLGLVVKDGATTVATLNQRLSSVHTSKMDIYDSLGNAHTLEVSWEKIDN 428

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                +  + +   I  +      N   E     + +F      A        + +    
Sbjct: 429 NQWRWRAFLPSEPGITMTDNTGVINFTSEGKIEGVDTFDVTINFAALGAEDSTVRLDFSG 488

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
           +  D        + I    QY S  +            +     ++    +   Y +   
Sbjct: 489 RSFD-------KDAIEGVTQYGSAFTTKAYYQDGYPMGVLQDYAVSSDGTVQGVYSNGQR 541

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +A       L + +           S    +    +     I  S      V+
Sbjct: 542 QPLYKLALALFANPQGLFKESGTVFSQ--SANSGIAQIVKPMEGGAGRIMGSNLEMSNVD 599

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L +E   LI  ++ +  + ++I  +D++L+ L+   +
Sbjct: 600 LSQEFVNLIVAQRGFQANARVITTSDQVLEELINLKR 636



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/399 (5%), Positives = 76/399 (19%), Gaps = 22/399 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------P 47
           +L       +           +  NI N +   + R + +                    
Sbjct: 1   MLRSLYSGVSGVKGHQTYLDVVGNNIANVNTTGFKRSNVLFQDLLYQNVRGAMAPDAGQG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                  Q      +           +        F    +         ++        
Sbjct: 61  RGGINPMQVGLGSMVGAVETIHTQGTMQYTGNRNDFGISGDGYFVVKTGADTFYTRAGSA 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL---- 163
                      S           +++           +  I     +++E   + L    
Sbjct: 121 TMDSGGNLVM-SGMGYIYQGYKMSKDPTDPTKYVEGPLGDINIPVGQKLEANKTTLGGYR 179

Query: 164 -RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                     +   I    +               + +   +    T+    N + +   
Sbjct: 180 CNLDSRVKAHLPMGITGNDSEFKIVLGTNTYTLNQVSEGGAVASFMTLSDGTNSVTLGFP 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
               + +      N  ++ +    + ++     G +  ++  ++     + AL+  +   
Sbjct: 240 AAGPIVDPTSLLPNLTQITTAGAFTGASYDPATGKLTVTDGTNSSTVD-LAALMDFQVLS 298

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V    N             +  D              A     +     +  +  +    
Sbjct: 299 VKDALNNTYYYLAEFNDVATTGDKELVLWGPDASAGGAMTRYSVTVPTRRDGTFDLSAAT 358

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
              +            +     +  +           + 
Sbjct: 359 NLLAAAQSPTGNAVTVQATTDGLGLVVKDGATTVATLNQ 397


>gi|262404534|ref|ZP_06081089.1| flagellar hook-associated protein FlgK [Vibrio sp. RC586]
 gi|262349566|gb|EEY98704.1| flagellar hook-associated protein FlgK [Vibrio sp. RC586]
          Length = 579

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/414 (10%), Positives = 109/414 (26%), Gaps = 14/414 (3%)

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
              +    K     + H  N  T         L+              +++       + 
Sbjct: 165 TKVTVTQRKNGEGFNIHIGNGHTLVSGTEASQLKIIDGYPDTQQHRLAMVEGKAIKAISA 224

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLL 198
                +++ I    DK I   +  + R     +   + ++ +              DV +
Sbjct: 225 RDIGGKMEAILDMRDKHIPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGGPLFTDVNM 284

Query: 199 QKISEIIGIS--------------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             I+    ++                     +  +  +    +            +    
Sbjct: 285 DVIARSRVVTNSNSKADMAVFIDDVSQLKGGEYSMQYNGSEYVVTQPSGQQTVLPVVKGN 344

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           V  +   I +        +    P     A +++          Q  E +       ++ 
Sbjct: 345 VYIDGLRIEVRNPPQVGERVLVRPTRSGAAAIRLATEDATKIAAQSFEASTTFAQGKAQF 404

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
             +         + ++           +G               + L     +++  L N
Sbjct: 405 KILQAGDVREFEVHVSPTGDQFAVTDTKGNILMQPQPYPPTGPVTVLGTTFELTEGALPN 464

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            K  A          +      I       +   T+++   N    +    +    L   
Sbjct: 465 DKFTANLVPSEGDNGNLRKMINIQTDKKMNDKESTIIDLYHNLNTDVGLKMATMTRLTDV 524

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S++         ++  GVNL EE + ++K +Q+Y  S+++I  ++    T+L  
Sbjct: 525 SRLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILAL 578



 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 113/297 (38%), Gaps = 7/297 (2%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V   R        K L+  S+    +R  +    +   + +           
Sbjct: 8   ETYGMGVHVENVRRSWDQFAVKELNIASTDYSFKRDTEENLDMLSKLLSSVASKK-IPEN 66

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +++  DS++S + + ++    K V++ A+ + QN N     V++ +  A+K ++L +  +
Sbjct: 67  LNEWFDSVKSLADSPNDLGARKVVLEKAKLISQNLNDFHETVRQQKDIANKGLDLGVERI 126

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTS 222
            +   E+  +   +          +D +D+ + L+ ++S+   ++   R N     ++  
Sbjct: 127 NQLALEIRDLQRLMMRVP---GPHNDLMDKHEKLVAELSQYTKVTVTQRKNGEGFNIHIG 183

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +G TL          + ++ Y  T +     ++G  + +     +  GK++A+L +RD  
Sbjct: 184 NGHTLVSGTEASQL-KIIDGYPDTQQHRLAMVEGKAIKAISARDI-GGKMEAILDMRDKH 241

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +P   +++  +A       +       +     G  +   +        + ++ +  
Sbjct: 242 IPYLMDEVGRLALSFSHEVNTLQSQGLDLRGNVGGPLFTDVNMDVIARSRVVTNSNS 298


>gi|323178488|gb|EFZ64066.1| flagella basal body rod family protein [Escherichia coli 1180]
          Length = 218

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 78/219 (35%), Gaps = 12/219 (5%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVT 54
            + N   +  + A  +     +N  NA    Y R+    +           +   V V +
Sbjct: 2   DMINIGYSGASTAQVELNVTAQNTANAMTTGYTRQVAEISTIGASGGSPNSAGNGVQVDS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +       +   +S  G     Q + +  E + +DD  N+S +        +L   
Sbjct: 62  IRRVSNQYQVNQVWYAASDYGYYSTQQGYLSQLEAVLSDD--NSSLSGGFDNFFAALNEA 119

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + +  +  L + VI  A  +    + +   +     +   + +  +S +    S +   N
Sbjct: 120 TTSPDDSALREQVISEAGALSLRIDNTLDYIDSQSTEIISQQQAMVSQINTLTSGIASYN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             I    A+  +A    D RD +++++S ++ +   + +
Sbjct: 180 QQIAQAEANGDNASALYDARDQMVEELSGMMDVQVNIDD 218


>gi|313144034|ref|ZP_07806227.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818]
 gi|313129065|gb|EFR46682.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818]
          Length = 707

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/453 (11%), Positives = 121/453 (26%), Gaps = 10/453 (2%)

Query: 31  ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ-SFEALKEM 89
                        + +     V +  +    +    L   +         Q   E   +M
Sbjct: 262 VSTIGINGEKVSFSNNSAITGVSSIVAAQNAI--NSLRDKTGVSAYVDAGQLRIENRNQM 319

Query: 90  MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
              +   N   T   + +  +     ++++      T  ++A+     F T+      I+
Sbjct: 320 DGGEKVKNIRITADGTGVFQNFVKGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQ 379

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            DA+     E +      S    +N    F+  +  DA    D++  L   ++     + 
Sbjct: 380 YDANMIKNPEKNYQESTASVAVTLNRWGMFEITNGDDA---DDEQRNLSLYVTSHFSDNV 436

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                        +  +L E        +   +   TS      +        +      
Sbjct: 437 TNNVLFKETFKALNTASLIEGGAAVNTGKINKATHATSVDIVDSLGSKHNIRFEFWKTGD 496

Query: 270 --GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                +A++      V     + +          S+      N   +             
Sbjct: 497 AVWSFRAVVPEPAQFVGGSATKPNVFEGGRATFNSDGSLSGMNPPVLQFDPKNGSKGPQR 556

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
            +L  G +E+                  +  +              L+  + +  +    
Sbjct: 557 LELKFGANESFGGLTSVDKISETYAINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALA 616

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A    N  L     N         S    +   +      +S S      V+L   
Sbjct: 617 QVALANFANNTGLQAEGGNVFSQTGN--SGEPMIGAANTGRRGGVSGSKLEMSNVDLSRS 674

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 675 LTQLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 707



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/459 (7%), Positives = 90/459 (19%), Gaps = 40/459 (8%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVT-------V 52
                        NI N +   +                                     
Sbjct: 1   MQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSIGLG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   +  K                      F  +     + D           +      
Sbjct: 61  VGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFII-----SPDRGTTHNYTRNGEFLFDAN 115

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-----FL 167
                    ++   V    E       +     +       + I+++   +        +
Sbjct: 116 GNLVTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPGMVMPARATKTI 175

Query: 168 SELTVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +    +N     D ++   A    A    D    +      ++ +   +    +      
Sbjct: 176 TLRANLNAGRHIDQMQEIAALDSTARTAADGIAPVYDSRGVLMQVGEDMGVLFNDDGDAF 235

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                             +    T E + I I+G  VS +  SA+         Q   + 
Sbjct: 236 ALNENQGIWMSYKTAVIKHDTVATDEVSTIGINGEKVSFSNNSAITGVSSIVAAQNAINS 295

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAG----NSENVPGLFIADGIKDLDNKLCQGISETI 338
           +         +    +   +      G    N                  +         
Sbjct: 296 LRDKTGVSAYVDAGQLRIENRNQMDGGEKVKNIRITADGTGVFQNFVKGEEDITAFRYRY 355

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
             +    S     R    +     ++   +            S         +  I    
Sbjct: 356 TKSEDADSTTGQFRTTEDLRALIQYDANMIKNPEKNYQESTASVAVTLNRWGMFEITNGD 415

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +  RN   ++  + SD+   ++  +  F  ++ +  
Sbjct: 416 DADDEQRNLSLYVTSHFSDNVTNNVLFKETFKALNTASL 454


>gi|226320911|ref|ZP_03796462.1| Flagellar hook-associated protein 1 [Borrelia burgdorferi 29805]
 gi|226233683|gb|EEH32413.1| Flagellar hook-associated protein 1 [Borrelia burgdorferi 29805]
          Length = 283

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 85/277 (30%), Gaps = 7/277 (2%)

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
               I++      +  +          T   +I     N+     +      +     + 
Sbjct: 12  SYFQINSTNEIFPEEKLGFYGTLKFEATNSNEIVEIPYNAPDTVQDVINRINNSNAQVTA 71

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
           + ++  K +IKA+ +  D  +      +++    L       +            +    
Sbjct: 72  RINSEGKLEIKAVKEQEDENITFKIKHIEDSGLFLTKYTGILNASG---PEGAYDYKNID 128

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
             D            +     +      +    S     + N  N     D       + 
Sbjct: 129 TTDKLAPKSTYSISPLKNPAAWIKVADIIDSDPSKIASGIKNPTNEISIGDNQ----AAL 184

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
             +   +    I  N+TL +Y  N+   +      S         +   +++   +  GV
Sbjct: 185 RISSFGNSQIMIGKNLTLNDYFANTASNIAIKGQISEITKESQSQILKDLTDLRMSISGV 244

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           N  EEL+ +I+ +Q++  ++K I  + +++ T++  +
Sbjct: 245 NKDEELANMIEFQQAFIAASKFITVSVELIDTVINKM 281


>gi|227815506|ref|YP_002815515.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           CDC 684]
 gi|254755229|ref|ZP_05207263.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Vollum]
 gi|227007620|gb|ACP17363.1| putative flagellar hook-associated protein [Bacillus anthracis str.
           CDC 684]
          Length = 214

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 14/189 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+      +              
Sbjct: 1   MRLSD-YNTPLSGLLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSAGASQGYSPEQKIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           ++    +KN  +     T+I    +     N  A+ +    A   ++IE  ++   R   
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKSLDTAEAQTTEDIEAHVNEFNRLAG 178

Query: 169 ELTVVNDAI 177
            L   N  +
Sbjct: 179 SLAEANKKM 187


>gi|172061972|ref|YP_001809624.1| flagellar hook protein FlgE [Burkholderia ambifaria MC40-6]
 gi|171994489|gb|ACB65408.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 413

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 95/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTGLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     +  +     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
              +   +                +  + + L+        +  T +       +     
Sbjct: 126 TAGSGGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                   D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFSATDSTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                    G        +    G IK+      +       Q                 
Sbjct: 220 --------GGATTDLGTVTFDTSGAIKSTTTGTPAAPTTSLGQFQ--------------- 256

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                +   Q ++  +    QY                      
Sbjct: 257 -------------FTVPNTDGSATPQSLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E + S    +     
Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESSASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGVLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|170703096|ref|ZP_02893916.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170131993|gb|EDT00501.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 413

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 95/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N    +  +       +    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTGLASVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     +  +     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
              +   +                +  + + L+        +  T +       +     
Sbjct: 126 TAGSGGVI----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                   D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFSATDSTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                    G        +    G IK+      +       Q                 
Sbjct: 220 --------GGATTDLGTITFDTSGAIKSTTTGTPAAPTTSLGQFQ--------------- 256

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                +   Q ++  +    QY                      
Sbjct: 257 -------------FTVPNTDGSATPQSLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E + S    +     
Sbjct: 304 SIGADGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESSASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGVLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|307131609|ref|YP_003883625.1| flagellar hook protein flgE [Dickeya dadantii 3937]
 gi|306529138|gb|ADM99068.1| Flagellar hook protein flgE [Dickeya dadantii 3937]
          Length = 399

 Score = 96.3 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/473 (7%), Positives = 103/473 (21%), Gaps = 76/473 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N AS     I  NI N+    +   +           V             
Sbjct: 2   SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRV------- 54

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                              ++ +  S     + S +  ++   +       +    +  +
Sbjct: 55  ------------------ASVLQDFSNGSITSTSRSLDVAINGNGFYRLLNSNGSVVYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              +   R   + +                         +  + 
Sbjct: 97  NGQF--------------TLDSSRNIVNAQGLQLTGYPATGTPPAIQQGADPVGLSIPET 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                      ++  ++     +T    +           T ++++    NF      + 
Sbjct: 143 TMSAKATSTASIIASLNSSDSTNTWDPTDPTNTSNYKGSITTYDSLGNAHNFALYFVKSA 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           ++  +    D  +  +                                            
Sbjct: 203 SNSWDVYAQDTSITGAGFQGPTT-----------------------------------LS 227

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +                +              Q   + S         +      
Sbjct: 228 FNTSGALTTTTPATISMATLNGSAASTFNLSFTGTVQQNSGSNSTKTPTQDGYEPGELTG 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            +++    ++  Y ++  +      +A       L     N   W     S    +    
Sbjct: 288 YSISEDGSVVGSYSNNKTQLLGQIALANFANPEGLSPQGDNV--WAATGNSGQAVVGSAG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +    + +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 TGNLGKLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 398


>gi|254436908|ref|ZP_05050402.1| hypothetical protein OA307_1778 [Octadecabacter antarcticus 307]
 gi|198252354|gb|EDY76668.1| hypothetical protein OA307_1778 [Octadecabacter antarcticus 307]
          Length = 228

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 5/199 (2%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENKNMFDKVLH 68
            N AS+    +  N+ N+    Y RR    + +        V + +              
Sbjct: 1   MNAASRMAEIVSSNVSNSLTDGYGRRSLNLSSAVVGGRGAGVEIGSVNRHVDRGILGDRR 60

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
              +++G    L S     +        + S +  I  +  +L   + + +  I   ++ 
Sbjct: 61  LAGASLGGFGSLVSTLNRIQDTVGQAGDSGSISARIVAVESALIDAASDPASTIRLSSLG 120

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               +V  + N S+ ++Q  RA AD  I  ++S L   L+++   N  I +   +  D  
Sbjct: 121 GRLSDVAASLNASSGDIQTQRAQADTSIAGQVSQLNTALAQVEQFNVDISYSHHNGVDPS 180

Query: 189 DFLDQRDVLLQKISEIIGI 207
              DQR  ++  I+EI+ +
Sbjct: 181 GLHDQRQRVIDVIAEIVPV 199


>gi|146341764|ref|YP_001206812.1| putative flagellar hook-associated protein 1 FlgK [Bradyrhizobium
           sp. ORS278]
 gi|146194570|emb|CAL78595.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein)
           [Bradyrhizobium sp. ORS278]
          Length = 581

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 165/449 (36%), Gaps = 21/449 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL      A    +    Q +    NI NAD K Y ++               V++   
Sbjct: 1   MSLDIARLVAFTGISTTELQISVASSNISNADTKGYTQKTANQVADVTGGIGTGVSITGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109
            S    +  K L   +S +G      S+    + +              S  + ++ L  
Sbjct: 61  SSNVDKLLLKSLIGANSDLGAADTTNSYLTQLQQLFGSASTSGTSTTGTSLANSLASLES 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L S + + S   L    +   ++      +++  VQ +R +ADK+I   + ++   L +
Sbjct: 121 ALSSLASSPSSVSLQSAAVSALDDFASQLRSTSSSVQTLRGNADKDIASSVQSVNDDLKQ 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           ++ +N  I+   AS     D  D+R+  LQ +S  + +S    +N D+ VYTS G  L +
Sbjct: 181 ISDLNVEIRKMAASGQSTADLEDERNSALQDLSSYMNVSYYTASNGDLQVYTSSGRALVD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +    +++    + + +S  + I +DGV VSS   S    GKI +L+ +RD  +P  Q Q
Sbjct: 241 SSAHTLSYTTSANISASSSFSGIMVDGVDVSSQITS----GKIGSLITLRDDTLPAVQTQ 296

Query: 290 LDEMARVL------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           LD++A  L      I   +   P          +  A G+          + ++  +   
Sbjct: 297 LDQLASQLRSALNGITEGASAVPPPTTLTGTASVSSATGLSASGTVRIAAVDQSGNLTAS 356

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
           Y  + S     G +          +    D       +         V  + ++    ++
Sbjct: 357 YDFDLSGYSTVGDLVADINAKNIGVTASIDSSGDLALTATATGNGVAVNDMTSSFGGPDF 416

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
           +           S + D  + + ++    
Sbjct: 417 SGYFGINDLVTGSSAADFAVNNSILSGSA 445



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 1/226 (0%)

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
                 +       G + A +  ++  V    +   ++A     + +        S    
Sbjct: 354 TASYDFDLSGYSTVGDLVADINAKNIGVTASIDSSGDLALTATATGNGVAVNDMTSSFGG 413

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
             F      +            +  +    S         S +     +    AG   +I
Sbjct: 414 PDFSGYFGINDLVTGSSAADFAVNNSILSGSAGLPTGTLDSSATLTSGSQVLTAGSATVI 473

Query: 376 NHYCDSFNKNFIFDPVAGIN-TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           N   D    +  F    G++ T  +  +YA   +  +    S +   +       +  + 
Sbjct: 474 NALYDKLTGSTSFKAAGGLSATTGSFADYAAAIVANVASKASQASSNYTAKSTAQSSYAS 533

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           S S+  GVN+ EE + L  ++  Y  +++LI   + M  +LL  V+
Sbjct: 534 SLSSQSGVNIDEETARLSSLQNKYAAASQLISVVNSMFSSLLTAVQ 579


>gi|107023953|ref|YP_622280.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054]
 gi|116691040|ref|YP_836663.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424]
 gi|105894142|gb|ABF77307.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054]
 gi|116649129|gb|ABK09770.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 413

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +  + AS     I  NI NA+   +            N    +  +       +    
Sbjct: 6   GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTLNSVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D    +                +  + + L+        +  T +       +     
Sbjct: 126 MADKNGVL----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A    +  D      S  I +   +  +  + +Y              +           
Sbjct: 170 AKTPFNATDTTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                    G        +    G IK+      +       Q                 
Sbjct: 220 --------GGATNDLGTITFDTSGAIKSTTTGTPATPTASLGQFQ--------------- 256

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                +   Q ++  +    QY                      
Sbjct: 257 -------------FTVPNTDGSATPQNLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E   S    +     
Sbjct: 304 SIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESAASGVPQVSAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|170734374|ref|YP_001766321.1| flagellar hook protein FlgE [Burkholderia cenocepacia MC0-3]
 gi|254246965|ref|ZP_04940286.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184]
 gi|124871741|gb|EAY63457.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184]
 gi|169817616|gb|ACA92199.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 413

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/472 (9%), Positives = 97/472 (20%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +  + AS     I  NI NA+   +            N    +  +       +    
Sbjct: 6   GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTLNSVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                  I                    +   +        +     Y  N     L   
Sbjct: 66  QQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D    +                +  + + L+        +  T +       +     
Sbjct: 126 MADKNGVL----------------NTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
           A    +  D      S  I +   +  +  + +Y              +           
Sbjct: 170 AKTPFNAADTTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ---------- 219

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                    G        +    G IK+      +       Q                 
Sbjct: 220 --------GGATNDLGTITFDTSGAIKSTTTGTPATPTASLGQFQ--------------- 256

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                +   Q ++  +    QY                      
Sbjct: 257 -------------FTVPNTDGSATPQNLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     L  +Y +          +A  N    L+    N     E   S    +     
Sbjct: 304 SIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYA--ESAASGVPQVSAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 362 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|317129200|ref|YP_004095482.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474148|gb|ADU30751.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 397

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 2/225 (0%)

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
                  +   VP   I +L  +    +   +   +E      G          +   V 
Sbjct: 175 NSETQVGETVNVPYPVIDSLGNMHYLELTFQKQAGNEWTVQAGGQALGNVNFGNDGSFVA 234

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
              +       +N     I        QY  N +      S +        +++   +++
Sbjct: 235 ADDMTVNFNPGNNANPLNIELDFSRMSQYARNSTADIHYVSGNVDGTLESYSISQAGEIM 294

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
             + +   +      +A  N    L +   N   ++  N S +  + +        ++ +
Sbjct: 295 GVFSNGEVRLLGQIALATFNNPGGLSKSGNNL--YMVSNNSGNPQVGLAGDGGRGMLTGA 352

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 353 SLEMSNVDLSEEFTEMIVAQRGFQANTRMITTSDEILQELVNLKR 397



 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/292 (6%), Positives = 56/292 (19%), Gaps = 20/292 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           +   +   +  NI N +   + +                    +   
Sbjct: 1   MIRAMYAGIGGMKSFQTKLDVVGNNIANVNTSGFKKGRVTFQDLVSQQMSGAATPTDNRG 60

Query: 63  FDKVLHA-------------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
               +                  ++             +     +    S          
Sbjct: 61  GINPMQVGLGTSMGSIDTIHTQGSLQTTGRDLDIGITGDGFFIVNDGGQSYYSRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  N +   +    + + E              ++      +      NL      
Sbjct: 121 DENGDLVNANGLRVQGYSVVDGELDTNTLGPLQIASGQLIPPQATDEAQFKGNLNSETQV 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              VN       +  +  +  L  +     +       +          V   +  +   
Sbjct: 181 GETVNVPYPVIDSLGNMHYLELTFQKQAGNEW------TVQAGGQALGNVNFGNDGSFVA 234

Query: 230 TVPRDINFEK-MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                +NF    N+  +  E +   +     +S        G +   L+   
Sbjct: 235 ADDMTVNFNPGNNANPLNIELDFSRMSQYARNSTADIHYVSGNVDGTLESYS 286


>gi|32267203|ref|NP_861235.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449]
 gi|32263256|gb|AAP78301.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449]
          Length = 718

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/452 (11%), Positives = 121/452 (26%), Gaps = 8/452 (1%)

Query: 31  ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90
                        + +     V +  +      + +                 E   +M 
Sbjct: 273 VSTIGINGEKVSFSNNSAITGVSSIVAAQNA-INSLRDKTGVNAYVDAGQLRIENRNQMD 331

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
             +   N   T   + +  +     ++++      T  ++A+     F T+      I+ 
Sbjct: 332 GGEKVKNIRITSGGTGVLQNFVQGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQY 391

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           DA+     E +      +    +N    F+ A   +  D  D++  L   ++     +  
Sbjct: 392 DANMIKNPEKTYYESTATVGVTINRWGMFEIA---NHDDADDEQRNLSLYVTSHFSDNVT 448

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK- 269
                   +   +  +L E        + + +   TS      +        +       
Sbjct: 449 NNVLFKETMKALNTASLIEGGAAVNTGKIVKATHATSVDIVDSLGSKHNVRFEFWKTGDA 508

Query: 270 -GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
               +A++      +     + +          S+      N   +              
Sbjct: 509 VWSFRAIVPEPAQFIGGSITKPNVFEGGRASFNSDGSLSGMNPPVLQFDPKNGSKGPQRL 568

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
           +L  G +ET                  +  +              L+  + +  +     
Sbjct: 569 ELKFGANETFGGLTSVDKISETYSINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALAQ 628

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A    N  L     N         S    +   +      +S S      V+L   L
Sbjct: 629 VALANFANNAGLQAEGGNVYSQTGN--SGEPMVGAANTGRRGGVSGSKLEMSNVDLSRSL 686

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + LI V++ +  ++K +  +D++L TLL   +
Sbjct: 687 TQLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/328 (7%), Positives = 64/328 (19%), Gaps = 41/328 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L       +              NI N +   +                          
Sbjct: 1   MLRSLWSGVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGL 60

Query: 49  NVT-------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K                      F  +     + D       
Sbjct: 61  GGQNDFSVGLGVGIDATTKVFSQGNTQNTDVKTDVAIEGDGFFII-----SPDRGTTHNY 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +               ++   V    E       +     +       + I+++  
Sbjct: 116 TRNGEFLFDANGNLVTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPG 175

Query: 162 NLRR-----FLSELTVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-- 209
            +        ++    +N     D ++   A    A    D    +      +  +    
Sbjct: 176 MVMPARATKTITLRANLNAGRHIDQMQDVAALDSTAQTAADGVVAIYDSRGVLTQVGEDL 235

Query: 210 ---IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
                 + +   +  + G  L        +   + +   T   N   +     S+  G +
Sbjct: 236 GVLFNDDGDAFALNENQGIWLSYKTAAIRHETVVTNEVSTIGINGEKVSFSNNSAITGVS 295

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  A+  +RD           ++ 
Sbjct: 296 SIVAAQNAINSLRDKTGVNAYVDAGQLR 323


>gi|153839997|ref|ZP_01992664.1| flagellar hook-associated protein [Vibrio parahaemolyticus AQ3810]
 gi|149746457|gb|EDM57466.1| flagellar hook-associated protein [Vibrio parahaemolyticus AQ3810]
          Length = 375

 Score = 95.9 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 114/364 (31%), Gaps = 18/364 (4%)

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-SNLRRFL----------SELTVVN 174
            ++D    +   F+    ++Q    D + +I  ++ +++   L          +    V 
Sbjct: 18  QLLDEMGRLATGFSYKVNQLQSQGLDLNGKIGKDVFTDVNSELVAKSRVFTAPNSKADVA 77

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +   +A K   +      D       +   +   +  ++   V       + E +   
Sbjct: 78  VYVDDISALKGGEYALRFDGDRYSVTTPKGEQVQIDIDQSDSAFVLDGMRVQIGEGLAAG 137

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                  + +  +       D   +++    A      +   +         +     + 
Sbjct: 138 ERVLLRPTRSGAAIIKMETNDAKSIAAQSYEASTTFA-QGSAKFNIREAGDVKEFEVTVQ 196

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                       I  N  N+     +  +   D  +   +S++  +     +    L +G
Sbjct: 197 PPDEKHDKAWLKITDNKGNLLSDKYSYPLDKDDPLIEISVSKSHPLYKNGDATIFELTEG 256

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             ++ KF  N+    G    +                     + TL++   N    +   
Sbjct: 257 ALLNDKFTANLVPSEGGNGNLRKMQQLQTNKM------MDGKSSTLIDVYHNLNTEVGLK 310

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + ++ L   +++      E  ++  GVNL EE + ++K +Q+Y  S++++   +    T
Sbjct: 311 SATANRLASVARLEHEAAQERVASIAGVNLDEEAANMMKFQQAYMASSRVMQAANDTFNT 370

Query: 475 LLEG 478
           +L+ 
Sbjct: 371 ILQL 374


>gi|327398495|ref|YP_004339364.1| flagellar hook-basal body protein [Hippea maritima DSM 10411]
 gi|327181124|gb|AEA33305.1| flagellar hook-basal body protein [Hippea maritima DSM 10411]
          Length = 719

 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/442 (8%), Positives = 112/442 (25%), Gaps = 17/442 (3%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           R    TI+P+   +  +   + ++    +   +       L      L+           
Sbjct: 295 RVASFTITPDG-EIQMKNLASSDITVANIATTNDLNSY--LKHGLINLEGGEGRSATIEA 351

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
             T        +         +           +      N     ++ +RA+ + +I  
Sbjct: 352 GKTRTTLPFLSAKGDVLAMSFDGGANYDAYRYVQSDTGTANNDFHTIEDLRAEINNDI-- 409

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            ++         +  +        +  +     +  D  +        +           
Sbjct: 410 -VNGGNGEAWATSSTSSDWVTIDPTSGEIVIKNNSTDDHVIGAVYSNNLKFATIMGTLSG 468

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +  +      +     ++   ++ Y      + +       S +  +       +A +  
Sbjct: 469 LVGNGSEVTSQPFEAAVHVTSIDVYDSLGNKHTVTFTFRKKSFDPITNYTTWSWQASVPE 528

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
              V         +    L+   S                I     D+D+          
Sbjct: 529 PGEVSNDNGEIQFDQTGKLVYLSSPLAITVDWRNGTASQVINLDFGDIDSFDGLTQFSLP 588

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   +                    +     ++  + +  +       +A    N 
Sbjct: 589 SQTTAQTQD---------GYPGGSLQRIMINQDGVVVGIFSNGKSYPLAQIAMAKFANNE 639

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L++   +     E   S +  +           + S+     V+L EE + +I  E+++
Sbjct: 640 GLMKEGGSMYS--ETANSGAPLIGTAGTGGRGTFAPSHLEMSNVDLAEEFTNMIIYERAF 697

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
             +++ I  +D+M+Q LL   +
Sbjct: 698 QANSRSITTSDQMIQELLNLKR 719



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/422 (11%), Positives = 101/422 (23%), Gaps = 31/422 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       +   +  Q    +  N+ N +   + +                        
Sbjct: 1   MLRSLWSGVSGLKSEQQGMDVVGNNVANVNTIGFKKGRINFVDVLSQTMSAATGPEGNIG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                      T    +       L A S           F  + +     D        
Sbjct: 61  GKNAAQIGLGTTVAVVDNIFSQGSLQATSKITDLAIQGDGFFVVSD-----DGGKTYRYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                    +    N    I+   + +     +    +    V          I   IS 
Sbjct: 116 RAGDFSFDADGNLVNPEGFIVQGWLANEETHKINTAASIENIVVPQDKTVPAGITKNISI 175

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG-----ISTIVRNNNDM 217
                   T+   A    T  +++     D   VL     E I       +    + +  
Sbjct: 176 KANLNGGDTIEEMAPAHGTVDENNNTVEPDDMSVLFDVNGEAINLGKTIATFANNSTSFS 235

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALL 276
            +Y  +G  +  +    I+ +     T  + +     D   + S   +            
Sbjct: 236 SLYDINGNQIQLSSGATISLDITYGGTTATATVSYPSDFNTLGSLASALGNAVSAAIGTR 295

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
               ++ P  + Q+  +A   I   +       NS    GL   +G +     +  G + 
Sbjct: 296 VASFTITPDGEIQMKNLASSDITVANIATTNDLNSYLKHGLINLEGGEGRSATIEAGKTR 355

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           T       + +   +   G  +      V++  G  +   H  +        D V G N 
Sbjct: 356 TTLPFLSAKGDVLAMSFDGGANYDAYRYVQSDTGTANNDFHTIEDLRAEINNDIVNGGNG 415

Query: 397 NV 398
             
Sbjct: 416 EA 417


>gi|144901061|emb|CAM77925.1| probable: Flagellar hook protein FlgE, gene: FLGE OR GSU0419
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 605

 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/522 (7%), Positives = 103/522 (19%), Gaps = 54/522 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           +    N A       S    SI +NI N +   Y R++T+            +       
Sbjct: 76  IWGAMNNASTAMMATSWDMGSISQNISNVNTTGYKRKETLFKTVMSESKAGPSTHSGKLN 135

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                  D+        I                      + + +           +   
Sbjct: 136 IFGVKTADRYHIEQQGTITGSNWNTDLAINGRGFLLVAPPSTTTSGTTVSSNAPTSASVD 195

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + +  +  +    +                        +    I          T+    
Sbjct: 196 DPASVLYTRDGSFHFVAGPNQEKYFTTAGGNYVLGWMADDTGTIDQTGALTPVYTLPETT 255

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           ++ +  ++      +  RD  L   +     +          +  +       T     +
Sbjct: 256 MEGRETTEASVFANI-PRDATLSASNFNSTSTFTDPLGASQTLTLNWSRVDATTWTVTPS 314

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ------- 289
                    ++           +++    A     I        +               
Sbjct: 315 VPAAVGAVSSAAMTVTMDSNGNITAPATFAAEPVTINWDDGAYGAATADSATTVNLSSSK 374

Query: 290 ----LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               + ++   +  S      +    E          +    N         I V     
Sbjct: 375 PSIPMQKIYLEVFDSNFNSHTVTLGFERSGINTWYMHVLPGSNATTGANPTPIDVTFNED 434

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                  A     ++          I +       + TL+    
Sbjct: 435 GKMVTGSPASLALSWTSGTEVGTATVALDMDGMTQYDGDLHIDNIATDGYGSGTLISSGF 494

Query: 406 NSIGWL-EKNRSDSHDLH--------------------------MKSQVVFNHISE---- 434
           N  G +  +  +                                    +  + +      
Sbjct: 495 NERGEMYGQFTNGKTRALFKLPIAQFVAENNLEPISGNLFRRSREAGDITVSSVENAVGA 554

Query: 435 -----SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                S      V++ +E + +I  +++Y  +  +    D+M
Sbjct: 555 PRFSPSSLEASNVDIGQEFTKMIVTQKAYTTNATVFKTADEM 596


>gi|237751739|ref|ZP_04582219.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879]
 gi|229373105|gb|EEO23496.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879]
          Length = 718

 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/442 (11%), Positives = 120/442 (27%), Gaps = 4/442 (0%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +   ++  +  +   +  + V                 E   EM   ++  N 
Sbjct: 281 QKVSF-TNDSGLSGTSTLAAAVSAINAVRDKTGIEAYVDNGQLRLENRNEMDGDENTKNI 339

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
             T   +    +     K+++      T  ++ +     F T+      ++ DA+     
Sbjct: 340 IVTKSGTGAFANFVEGDKDITAFRYRYTKSNDPDSTTGQFKTTEDLRALMQYDANMIKSP 399

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
                    S    +N    F+ ++K +     D   ++    S     S I+  +    
Sbjct: 400 GKEYKDSTASVSVTLNRFGMFEISNKDNDDGVTDNLQIMASAYSSGQVSSNILLRDAMRA 459

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           + T+       +      F      T     + +     +      S   +   +A++  
Sbjct: 460 LNTAS-LIEGGSSVASGKFTHARHATSVDLFDTLGTKHTIRFEFIKSGGKEWTFRAIVPE 518

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
               +    +  +      +   ++      N   +              +L  G ++T 
Sbjct: 519 PAQFIGGSADNPNMFEGGRVSFNNDGSLAGMNPPMLQFDPKNGAESPQRIELNFGKNQTF 578

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                            +                 L+  + +          +A    + 
Sbjct: 579 DGLTSVDKRSETYNIAQNGYNAGDLMDVRFDANGALLGAFSNGKTLALAQVGLANFANSA 638

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L     N         S    +   +      +S S      V+L   L+ LI V++ +
Sbjct: 639 GLQAEGNNIFSETGN--SGEPIIGAANTGRRGGVSGSKLEMSNVDLSRALTQLIVVQRGF 696

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
             ++K I  +D++L TLL   +
Sbjct: 697 QANSKAITTSDQILNTLLSLKQ 718



 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/392 (6%), Positives = 78/392 (19%), Gaps = 36/392 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       +              NI N +   +             V            
Sbjct: 1   MLRSLWSGVSGLQAHQVALDVESNNIANVNTVGFKYSRASFVDMLSQVKQIATSPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K                      F  +     + D       
Sbjct: 61  GGQNDFSVGMGVGINATTKVFSQGNTQNTDVKTDLAIEGDGFFII-----SRDRGETKNY 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++        ++   +  T     +       + I+++  
Sbjct: 116 TRDGEFLFDAKGNLVTNGGYVVQGWNRPPIDQGSGSTMTDNEFFKVDNTGPLESIQIDPG 175

Query: 162 NLRR-------FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            +          L         +                 D +  K      ++ +  + 
Sbjct: 176 MVMPARPTSKVTLRANLSAGRHVDDVVNVSALDSTTYTAADGISPKYDSKGNLTQMAEDF 235

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKM---NSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
             +     D   L E     ++++     N+   T E + ++++G  VS    S +    
Sbjct: 236 GALFNADGDSFALNENQGFWMSYKTSRLVNNVVTTKEPSVLYLNGQKVSFTNDSGLSGTS 295

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
             A      + V         +    +   +  +     +     +  +      +    
Sbjct: 296 TLAAAVSAINAVRDKTGIEAYVDNGQLRLENRNEMDGDENTKNIIVTKSGTGAFANFVEG 355

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                         ++P         ++    
Sbjct: 356 DKDITAFRYRYTKSNDPDSTTGQFKTTEDLRA 387


>gi|254462557|ref|ZP_05075973.1| flagellar hook protein FlgE [Rhodobacterales bacterium HTCC2083]
 gi|206679146|gb|EDZ43633.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium HTCC2083]
          Length = 1399

 Score = 95.5 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/431 (12%), Positives = 116/431 (26%), Gaps = 15/431 (3%)

Query: 48   ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               T    R+      +    A +  +G+  +  S           D  +       S L
Sbjct: 982  SGTTGKAVRANKAMGVETDQKASNIQVGRYEIDASTGLAITGDGTIDLASRVLADGKSHL 1041

Query: 108  RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
                 + S    E    K+    A         +++ V    A+ +    + ++ +    
Sbjct: 1042 MGVGSTVSVGFLEGTGLKSEPAKAIGGPAKDPLNSQPVFLNPANFETTFNVSVNGVNA-- 1099

Query: 168  SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                  N  I           + L+QR   ++       I  +           ++    
Sbjct: 1100 ------NIEIPGGNYIGTTLAELLEQRINQMRDPETGQTIGGVTVKYQP---TENNFVFT 1150

Query: 228  FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              T              +  +  P+ +  V   +    A  +  I   +     +V    
Sbjct: 1151 TGTTGDTSTIRVKGPAKLGLDDVPLSVGSVPTIAKLVQATNENGIPLYVNENGDIVDTEP 1210

Query: 288  NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            + L      L     E           P        +   +     +      + Q  + 
Sbjct: 1211 DNLVADYYPLYLDEGELTFDKTGKLISPQGMTRYESQ--SDSFSISLDIDFSSSTQLATP 1268

Query: 348  PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
             +      +       +  N+     L  +Y +  NK      +A  N    L +     
Sbjct: 1269 FAVNNLEQNGFTSGRLDGLNIDATGLLRANYTNGQNKPLGKIVLANFNNQNGLKQVGNA- 1327

Query: 408  IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              ++E   S    +       F  I         V++ EEL  LI  ++++  S+K I  
Sbjct: 1328 -TFVETATSGEPLIGEAGTEGFGSIQSGALERSNVDITEELVNLITAQRNFQASSKAIET 1386

Query: 468  TDKMLQTLLEG 478
            + ++ QT++  
Sbjct: 1387 STQLTQTIINI 1397



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/435 (11%), Positives = 99/435 (22%), Gaps = 25/435 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55
            F  A    N+A    ++   NI N     + R                      +    
Sbjct: 2   SFYTALTGLNDAQSDISTSSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      + +  +A+      Q F ALK                            
Sbjct: 62  KGVKQQFTQGNIASSLNALDMAISGQGFFALK----PSQTSTQVVYTRNGSFNVDNNRNV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S   L    ++    V      SA  ++      D +    +      LS     N 
Sbjct: 118 VDSSGQFLLTYPVNEDGSVTAKDIDSATPLRLPVTSGDPQATTNVD-----LSVNLPANA 172

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT--TLFETVPR 233
            +  +     D + F D  D      S    I   + N     VY       +  +   +
Sbjct: 173 EVAMEKDKFRDGYTF-DPDDPESFTNSTSFTIFDDLGNPTIATVYYIKTQAASAEDPTNK 231

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 +N   V+ +  P   D                +           P+++      
Sbjct: 232 FETRLVINDEVVSPDLVPALNDNGNQIYIDQFGNQTTTVPDPSYFAGRSAPLYKLDELRT 291

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 +    +    +  +     I      +                          D
Sbjct: 292 RLPSQPAILTGEQSGFDFGDEGSREIEIVTDPMLFGATYEADAANQGVYWGNDFLLVNLD 351

Query: 354 GGSVSKKFL---WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
            G+          N        ++     +S++     +   G    + +  +  ++ G 
Sbjct: 352 DGTRPVSISIRPGNYNAEELASEVERAINESYDDARKVEVRKGGEDTINIQLFTPSTDGD 411

Query: 411 LEKNRSDSHDLHMKS 425
           +    S S DL   S
Sbjct: 412 VPVANSVSIDLLEPS 426


>gi|269796390|ref|YP_003315845.1| flagellar hook protein FlgE [Sanguibacter keddieii DSM 10542]
 gi|269098575|gb|ACZ23011.1| flagellar hook protein FlgE [Sanguibacter keddieii DSM 10542]
          Length = 394

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/381 (8%), Positives = 87/381 (22%), Gaps = 14/381 (3%)

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR---RFLS 168
           ++       +I             Q  +T ++ +               + +    +   
Sbjct: 16  QTMLDVTGNNIANVNTTGFKASQTQFKDTLSQVLTNAGGAQGGVGGTNPAQVGLGVQLAG 75

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             T         T    D     D   V+ +        S     + +  + T++G  + 
Sbjct: 76  VTTNFQQGAAQVTNRSTDMMISGDGFFVVSKNGENFYTRSGAFDFDANGNLVTAEGALVQ 135

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFID-GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                D   +   +         +               +P       +  RD  V    
Sbjct: 136 GWAAVDGVVDPNGALAPLRLPTSVLNPASATTQVGFDGNLPSDAAVGTVLNRDVEVYDAL 195

Query: 288 NQLDEMARVLIGSF-----SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                +      +        +  +  +          +    L +     +        
Sbjct: 196 GNARNITLTFTQAAGAAGAPNQWQLTTSDGGAAQPVAFNADGTLASPGTVTVDGVAVSLA 255

Query: 343 QYRSNPSFLRDGGSVSKK---FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                        +              +     +I  + +          +      V 
Sbjct: 256 DVTGFAKLTSIETASKDGQRAGSLQSFTINADGTIIGAFSNGLKSPVGRIALGTFANPVG 315

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +   +         S    +          +         V+L +E + LI  ++ + 
Sbjct: 316 LEKAGGSLYTT--TVNSGEAAIGTAGTGGRGSLVGGALEMSNVDLSQEFTNLIIAQRGFQ 373

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++++I  +D++LQ L+   +
Sbjct: 374 ANSRVITTSDELLQELVNLKR 394



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/286 (9%), Positives = 58/286 (20%), Gaps = 14/286 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53
           +L       +              NI N +   +    T    +   V            
Sbjct: 1   MLRSLFSGISGLRTHQTMLDVTGNNIANVNTTGFKASQTQFKDTLSQVLTNAGGAQGGVG 60

Query: 54  ----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +     +    A              +          +          
Sbjct: 61  GTNPAQVGLGVQLAGVTTNFQQGAAQVTNRSTDMMISGDGFFVVSKNGENFYTRSGAFDF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS-NLRRFLS 168
                       ++      +            R    +   A    ++    NL    +
Sbjct: 121 DANGNLVTAEGALVQGWAAVDGVVDPNGALAPLRLPTSVLNPASATTQVGFDGNLPSDAA 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
             TV+N  ++   A  +  +  L          +      T         V  +   TL 
Sbjct: 181 VGTVLNRDVEVYDALGNARNITLTFTQAAGAAGAPNQWQLTTSDGGAAQPVAFNADGTLA 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
                 ++   ++   VT  +    I+       +  ++    I A
Sbjct: 241 SPGTVTVDGVAVSLADVTGFAKLTSIETASKDGQRAGSLQSFTINA 286


>gi|271500066|ref|YP_003333091.1| fagellar hook-basal body protein [Dickeya dadantii Ech586]
 gi|270343621|gb|ACZ76386.1| fagellar hook-basal body protein [Dickeya dadantii Ech586]
          Length = 399

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/473 (8%), Positives = 103/473 (21%), Gaps = 76/473 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N AS     I  NI N+    +   +           V             
Sbjct: 2   SFSQAVSGLNAASSNLDVIGNNIANSATVGFKASNISFADMYAGSNVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L     ++ +        N S    ++   +            +  +
Sbjct: 50  -------------LGTKVASVLQDFGNGSINNTSRALDVAINGNGFYRLLDTNGSVVYSR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                              +   R   + +                    +    +  + 
Sbjct: 97  NGQF--------------TLDSSRNIVNSQGLQLTGYPATGTPPTIQQGASPVALSIPET 142

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                      ++  ++     +T    +           T ++++    NF      T 
Sbjct: 143 TMSAKATSTASIIANLNSSDSTNTWNATDPTNTSNYKGSITTYDSLGNAHNFGLYFVKTA 202

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  +    D  +  +                                            
Sbjct: 203 ANSWDVYAQDTSISGAGFQGPTT-----------------------------------LS 227

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +  +                +              Q   + S                
Sbjct: 228 FNSSGALTTTTPATISMATLNGSAASTFTLAFTGTVQQNSGSNSTKTPTQDGYAPGELTG 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            +++    ++  Y +S  +      +A       L     N   W   + S    + +  
Sbjct: 288 YSISDDGTVVGSYSNSKTQVLGQIALANFANPEGLSPQGDNV--WAATSNSGQAVVGLAG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +    + +  V++ +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 346 SGNLGKLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 398


>gi|146294550|ref|YP_001184974.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32]
 gi|145566240|gb|ABP77175.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens
           CN-32]
          Length = 395

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/474 (9%), Positives = 109/474 (22%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI NA    +    +                        
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFASIYNG---------------- 45

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                    GQ   +      +                +    +            +  +
Sbjct: 46  ---------GQAGGVSVMSTTQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYAR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + + +      +     +Q    +A  +I+            +  +        A   
Sbjct: 97  AGMFHKDSQGFITDPVGSRLQGYSVNATGKIQQG---------NVGDLQVQTASLAAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +   D  +        I+      +    ++   T++++++  +    +    T 
Sbjct: 148 TQVGLVSNLDARVD------PITVAFDPKDINSYHSIGTTSVYDSLGAEHVVTQYYVKTA 201

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E    +                                       +  V +   +   
Sbjct: 202 PNEWTVNY--------------------------------------TLDGVQLTEQTTLT 223

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A    +      A  +   +             + QY +  +                
Sbjct: 224 FDAKGVLDPTTTKQAFDLTLPNGASNLQFEINFDKSTQYAAKYNNSSLSQDGYTSGELKG 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     L   Y +   +      +A  +    L   + N   W+  N +        S
Sbjct: 284 VRLDDNGMLYGTYTNGQEQLQGQVILANFSNPNGLSAVSNN--AWVATNTAGQAITGAPS 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 342 TGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395


>gi|59889780|emb|CAH19136.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli]
 gi|284920044|emb|CBG33101.1| lateral flagellar hook protein (FlgE-like) [Escherichia coli 042]
          Length = 400

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/475 (9%), Positives = 106/475 (22%), Gaps = 77/475 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +            
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG----TA 57

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              +   ++             +          + +                        
Sbjct: 58  QSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNIS-----------------------Y 94

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T   + E     +  +A          D    L+   +     +   +            
Sbjct: 95  TRAGSFETDKNGYIVNASGAYLQGYPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLIFTA 154

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +     D  D            +      N      S  TT+++++  + +  +  + T 
Sbjct: 155 NFDASDDAIDR----------TTVPFDPTNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTS 204

Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
            +        DG   +      +        L                            
Sbjct: 205 DNTWEVQYTFDGQQQTGVPAMTLTFDPNTGKLT--------------------------- 237

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                                 D      ++       QY S  S   +  +       N
Sbjct: 238 ----------SPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQN 287

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              +     +   Y +          +A       L     +   W++   S +  + + 
Sbjct: 288 GVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVP 345

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                  +S     +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 346 GSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400


>gi|254419105|ref|ZP_05032829.1| conserved domain protein [Brevundimonas sp. BAL3]
 gi|196185282|gb|EDX80258.1| conserved domain protein [Brevundimonas sp. BAL3]
          Length = 588

 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/446 (9%), Positives = 113/446 (25%), Gaps = 9/446 (2%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           R              T+   N N+         S+          E         D    
Sbjct: 148 RSVNIGSVGGTAEPTTRVQINANLRSTQ---AVSSPAAPTNYNGVEDAAVPPVKHDITVG 204

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 +    +L+S    +               V    +++                 
Sbjct: 205 YKRTGANTFEVTLKSGITKIVGTATYDATGALTGFVPSAASSANGSATANATTLTITPTS 264

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               +      +      +     ++      ++   +         G+    + N  + 
Sbjct: 265 GTPPVNGTPYAIDFAEIGMATNGVAQTKYDPSVNSMAMYNADDDTPAGVKPDFKMNIPVS 324

Query: 219 VYTSDGTTLF----ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
                   L     ++   +  + ++ S                + +   +  P G++  
Sbjct: 325 DSKGGQRNLEIRFLKSAEPNQWYAEIVSAPADDVVTGAPYSNGQIKTGLIAFTPSGRLDV 384

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                        +   +     + S         +  +   +  ADG+      +   +
Sbjct: 385 ETMQSWPAGTGLFDDPTQATLSFLESDPNNTIDPADPLDNGKVKWADGLGIAAQTVMLDL 444

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           + +     Q  +         + +     +   +     +   + +   +      +A  
Sbjct: 445 NTSAGGLSQLNTASVVQSTVTNGTAFGNLSEITIDESGFVTAIFDNGVMRRIAQVAIATF 504

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
            +  +L E + N   +     S + +L          I+     +  V+L  E + LI  
Sbjct: 505 PSPDSLKEVSGN--AYAVSLESGTFNLKAAGTGGAGTIAAQQLESSTVDLSAEFTGLITT 562

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           +++Y+ S+K+I   D+ML  L+   +
Sbjct: 563 QRAYSASSKIITTADEMLAELINIKR 588



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/432 (9%), Positives = 92/432 (21%), Gaps = 17/432 (3%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQRSEN 59
                +     S   A+I +NI N +   Y R              +  + +     +  
Sbjct: 1   MLAGVSGLAANSAALAAISQNIANVNTVGYKRSQGEFQTLVNSQTRAGGSYSAGGVMANT 60

Query: 60  KNMFDK--VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           +    +   L   +++       Q F             +          R     Y KN
Sbjct: 61  RAFVSQEGQLQRTTASTDLAVSGQGFFVTTTQAENVGATDTRLFTRAGAFRVDNLGYLKN 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +   L    +D+  E+  + +  +R             E                N   
Sbjct: 121 SAGLYLQGWPVDSNGEIATDPSDLSRLRSVNIGSVGGTAEPTT-------RVQINANLRS 173

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-LFETVPRDIN 236
               +S     ++    D  +  +   I +       N   V    G T +  T   D  
Sbjct: 174 TQAVSSPAAPTNYNGVEDAAVPPVKHDITVGYKRTGANTFEVTLKSGITKIVGTATYDAT 233

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                     + S          +           +       D              + 
Sbjct: 234 GALTGFVPSAASSANGSATANATTLTITPTSGTPPVNGTPYAIDFAEIGMATNGVAQTKY 293

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                S     A +               + +      +  I        N  +     +
Sbjct: 294 DPSVNSMAMYNADDDTPAGVKPDFKMNIPVSDSKGGQRNLEIRFLKSAEPNQWYAEIVSA 353

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            +   +       G             +  +    +         +  + ++ +LE + +
Sbjct: 354 PADDVVTGAPYSNGQIKTGLIAFTPSGRLDVETMQSWPAGTGLFDDPTQATLSFLESDPN 413

Query: 417 DSHDLHMKSQVV 428
           ++ D        
Sbjct: 414 NTIDPADPLDNG 425


>gi|312115280|ref|YP_004012876.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220409|gb|ADP71777.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 413

 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/478 (10%), Positives = 108/478 (22%), Gaps = 67/478 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  + N + +     S   +++  NI N     Y R  T  +                
Sbjct: 1   MSLYGLLNTSASGMAAQSTALSTVADNIANVSTTGYKRASTEFST--------------- 45

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 L A S A   Q      +    + S     + S +  ++   +     S     
Sbjct: 46  ------LVASSGAGNYQSGGVDVDTRVAIGSQSGTTSTSSSTDLAVDGNGFFIVSGPNGT 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +      +      N +   +                     +S+L +        
Sbjct: 100 PALTRAGSFEKQADGTLENAAGYTLLGYPVGTTPSANSYAGLEEVNISDLAMKAVPSTEG 159

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T + +         D      +     +   + +                          
Sbjct: 160 TVTFNLPLQATAVTDATKLPSANAADATYTQKTSF------------------------- 194

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                         +    + N  +   K           +            +  L   
Sbjct: 195 -----------TAYNNAGTAVNLDAYYTKTADNTWEVSVYNQADATAGGFPYSSGALATE 243

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               D       +   L I               ++                   + +  
Sbjct: 244 TLTFDSTTYALTSPTSLSIPVPNGSTVVLDISKSTQLDAKYT--------FSANVNGNAA 295

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  ++    L   Y D  +      P+A + +   +   + N   +L    S S  
Sbjct: 296 SAVKSVEISDDGTLSVVYEDGSSVAAYTIPLAMVASPDNMTVISGN--AYLPNQDSGSVQ 353

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +       F  I         V+L  EL+ +I+ +  Y  + K+      +L+ L+  
Sbjct: 354 IGTAGTNGFGTIGSYTLENSDVDLATELTRMIQSQNIYQSNAKVFQTGSDLLKVLVNL 411


>gi|333008278|gb|EGK27752.1| flagellar hook protein flgE [Shigella flexneri K-272]
 gi|333019768|gb|EGK39040.1| flagellar hook protein flgE [Shigella flexneri K-227]
          Length = 390

 Score = 94.7 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/465 (9%), Positives = 99/465 (21%), Gaps = 79/465 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       +          N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFMLDENRNLLNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L                     +Q+     +  I   +   +   +    +N        
Sbjct: 116 LTGYPATGTPP----------TIQQGANPTNISIPNTLMAAKTTTTASMQINLN------ 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                              S+ +   T    +N          T+F++     +      
Sbjct: 160 ------------------SSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFV 201

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +       D                        +S+              L+    
Sbjct: 202 KTGDNNWQVYTQDSSDP--------------------NSIAKTATTLEFNANGTLVDGAM 241

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                   +        +    Q     + +    +  K   
Sbjct: 242 ANNIATGAING--------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 287

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 288 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 345

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                 F  ++        V+L +EL  +I  +++Y  + + I  
Sbjct: 346 TAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKT 390


>gi|144900453|emb|CAM77317.1| Flagellar hook protein FlgE [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 693

 Score = 94.3 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/414 (9%), Positives = 96/414 (23%), Gaps = 5/414 (1%)

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            ++  G      +        +   + +   T       D+L    K           + 
Sbjct: 282 TTAINGTTYTFNTTSGTSGATAGTFYADPGSTANTGAFVDALAGEMKRAFNLEYNSLAVS 341

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
               V      S          +        ++        +    A+  K  +      
Sbjct: 342 IPGAVGAADTFSVTINGTTTNLSTLVQGTASASAAAAALNASTTFSALGLKAFANGTNGK 401

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                +  +       G        +          T    V  +      +      + 
Sbjct: 402 LHIYSESAMTFDVAGTGAMATASWRDGNSATALTSKTTDGIVYAERLAGTDSLIFRQRDG 461

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
                   + S +                 +       N     +   I    +  P   
Sbjct: 462 VDAITVAGLNSLDLADGNSATLQGQDPSDTNGFTVAAINITGNTSEDAIEFNGDGTPKEI 521

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICV---NPQYRSNPSFLRDGGSVSKKFLWNVK 366
           N   +   +                   + +     Q   +        + +K   +   
Sbjct: 522 NVAFIDVDWANGSNDMSGTDSIGFFLGNLDIRDGMSQLDGDYQLGYWNQNGAKFGNFAGV 581

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +   + +   +     PVA       +   + N   ++  + S    L     
Sbjct: 582 SIGSDGIVTALFDNGVTRAVFQIPVATFVNPNGMQSLSGNV--FIGTDFSGEPTLRGAGS 639

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I+ S      V++ EE + +I  +++Y+ + K+I   D+ML  L+   +
Sbjct: 640 AGAGQINASSLEASTVDIGEEFTTMIVTQRAYSAAAKIITTADEMLDELVRIKR 693



 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 110/444 (24%), Gaps = 31/444 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL        +   + S    +I  NI N +   Y                    SP  
Sbjct: 1   MSLYGALFSGVSGLASQSSAMGAISDNISNVNTVGYKGARVNFQTLVTKQTSITAYSPGG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V    ++  +      +L A +S+       Q F  + E  +  ++ +          + 
Sbjct: 61  VQSKPRQGVD---VQGLLQATNSSTDIGMSGQGFFIVNEA-ARPENGDMFAYTRAGSFKV 116

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E Y +N+S   +    + + +   Q    +      ++A  D        N     ++
Sbjct: 117 DSEGYLQNVSGWYMQGWPLMSWDNSQQASQVTVGNNVFMKAYKDDTGNTVYINDNVVSAD 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +         +     +    L   S++  I                  T+++
Sbjct: 177 HL---RPLNMNEVGGTASQTRNLRMGANLPNNSDVGDI-------------FKQPVTIYD 220

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           ++  D   +   S    +  +   +  V   S            A+ ++     P     
Sbjct: 221 SLGGDATVQFSWSKVAQNRWDLEGVPPVGAKSMSLKKDSSTVYSAMGRLDFLGEPKTTGA 280

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L         +F+     +G +                             N +Y S   
Sbjct: 281 LTTAINGTTYTFNTTSGTSGATAGTFYADPGSTANTGAFVDALAGEMKRAFNLEYNSLAV 340

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +      +  F   +         +     S +        +   + + L  +A  + G
Sbjct: 341 SIPGAVGAADTFSVTINGTTTNLSTLVQGTASASAAAAALNASTTFSALGLKAFANGTNG 400

Query: 410 WLEKNRSDSHDLHMKSQVVFNHIS 433
            L      +    +         S
Sbjct: 401 KLHIYSESAMTFDVAGTGAMATAS 424


>gi|83591885|ref|YP_425637.1| hypothetical protein Rru_A0546 [Rhodospirillum rubrum ATCC 11170]
 gi|83574799|gb|ABC21350.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 661

 Score = 94.3 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/409 (10%), Positives = 114/409 (27%), Gaps = 6/409 (1%)

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS-KNLSEDILGKTVIDNAEEV 134
            Q     F A +   ++      S T  +S    +    +  + +   L      +  ++
Sbjct: 255 SQNGETYFAAGRLDFTSVPDAGTSVTINMSGTAYTFNFVAGADSASTTLAAAGAASPFDI 314

Query: 135 VQNFNTSAREVQKIRADA-DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                T ++ + K+     +       +           +   I  KT     A     +
Sbjct: 315 SVAGRTLSQVLDKLGDAVENASRNAYAAEYTIPAPPADGLVGTITGKTFPTRWAERVSGE 374

Query: 194 RDVLLQKISEIIGISTIVR--NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
             +L ++ SE   ++                        +P+     K++   V +   P
Sbjct: 375 NAILFRQGSESDTMTVDTSLLKTGSQPAVIQTNPIDSAGLPQPWTVRKLDGPDVLAAGLP 434

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
           +        S   S       +              + +     +   S   +  +   +
Sbjct: 435 MTSPAQWRGSWVNSNRVSASARDYPSAITFNGDGTPDTMFGYDEIGAASARSEVRLDWGN 494

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
             +     +            G   +     Q  S         + +K   ++  ++   
Sbjct: 495 GALNMDGSSAPPGSPAISQFWGNYNSGDGITQRDSAYQLNYISQNGNKFGNYSGVSIGED 554

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +   + +         P+A       +   + N   + E + S    +    +     
Sbjct: 555 GVVTALFDNGVTTPIFMIPIATFVNPNGMNSLSGNV--FQETDNSGLPTVRAAGEASAGT 612

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++++      V+L  E + +I  +++Y+ + K+I   D ML  L+   +
Sbjct: 613 VNQATLEASTVDLGSEFTNMITTQRAYSAAAKIITTADDMLDELIRIKR 661



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/426 (9%), Positives = 86/426 (20%), Gaps = 32/426 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL        +     S    +I  N+ N +   Y                    SP  
Sbjct: 1   MSLYGALFSGVSGLQAQSSALGAIADNVTNVNTVGYKGTKVNFQTLVTQQVSLTAYSPGG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V    +   +      +L A +S+       Q F  +         Y           + 
Sbjct: 61  VQSKPRTGVD---VQGLLQATTSSTDIGISGQGFFVVSGQAIDPTGYA---YSRAGSFKV 114

Query: 110 SLESYSKNLSEDILGKTVIDN---AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             + Y  N     +    +DN                 ++  +  +     +  + +   
Sbjct: 115 DKDGYLMNSGGYYMQGWPLDNWDGTAAASTVTKNGNVYMKSYKTGSGDTYYINPNAVDNT 174

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT----- 221
                 +N       A+   +          +   S+   +          + YT     
Sbjct: 175 NMRPINLNTIGGTARATSTLSIGANLPSAANIGSTSKTNALIFDSLGTPHNMNYTWTKRA 234

Query: 222 ---SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
               D         R ++    N  T  +     F       ++    +           
Sbjct: 235 QNVWDAEVTPPQGARQVDMLSQNGETYFAAGRLDFTSVPDAGTSVTINMSGTAYTFNFVA 294

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI----KDLDNKLCQGI 334
                          +   I           +         +         +      G+
Sbjct: 295 GADSASTTLAAAGAASPFDISVAGRTLSQVLDKLGDAVENASRNAYAAEYTIPAPPADGL 354

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
             TI            +    ++  +       +     L+                AG+
Sbjct: 355 VGTITGKTFPTRWAERVSGENAILFRQGSESDTMTVDTSLLKTGSQPAVIQTNPIDSAGL 414

Query: 395 NTNVTL 400
               T+
Sbjct: 415 PQPWTV 420


>gi|27381969|ref|NP_773498.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110]
 gi|27355139|dbj|BAC52123.1| flagellar hook protein [Bradyrhizobium japonicum USDA 110]
          Length = 410

 Score = 94.3 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/480 (8%), Positives = 94/480 (19%), Gaps = 70/480 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  V     +  +  S + +++  NI N +   Y R  T  +            S   
Sbjct: 1   MSLYGVMRTGVSGMSAQSNKLSTVSDNIANVNTTGYKRASTEFSSLILKSGSGNYDSGAV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +   + +                                 +       + +     
Sbjct: 61  ETTVRYAISDAGHTQFTT-----------------STTDLAVQGNGFFVVSNANNTQQYL 103

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
              G  V D    +V               +  +     +  +         V       
Sbjct: 104 TRAGSFVPDAQGNLVNAAGYYLLGQPGKVTNFSQNSLSGMQIVNIAQVSQVPVPSTAGTL 163

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T    D    +          S    I         + +      T              
Sbjct: 164 TTGNLDPKAAVIAGPPGPASYSSKSSIVAYNNIGQAVTLDVYMSHT------ATAAGSDT 217

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 + +    +      +   +A  KG + A         P   +        +   
Sbjct: 218 WQIQAYNSATGTSVGAATTFTFDTTATGKGALAAAS-------PTTLSFTVPGGAAVTMD 270

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            S       +                                   S P+ +         
Sbjct: 271 LSNMTQTGTDFSFKA--------------------------TVNGSAPAAIDKVDVDDAG 304

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
            +  +        L               P  G   +  +               S +  
Sbjct: 305 HVTAILKNGQQMTLYTIMLADVPSPDNLTPEPGNVYSTNMN--------------SGNAQ 350

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                      I         V+L +EL+ +I+ ++ +  ++K       +L  ++   +
Sbjct: 351 AGNAGTGGLGTIQSGALEDSNVDLADELTGMIEAQRGFTANSKSFQTGADLLDVVVNLKR 410


>gi|120597305|ref|YP_961879.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1]
 gi|120557398|gb|ABM23325.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1]
          Length = 395

 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/474 (9%), Positives = 109/474 (22%), Gaps = 80/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI NA    +    +                        
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFASIYNG---------------- 45

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                    GQ   +      +                +    +            +  +
Sbjct: 46  ---------GQAGGVSVMSTTQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYAR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + + +      +     +Q    +A  +I+            +  +        A   
Sbjct: 97  AGMFHKDSQGFITDPVGSRLQGYSVNATGKIQQG---------NVGDLQVQTASLAAKAT 147

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                +   D  +        I+      +    ++   T++++++  +    +    T 
Sbjct: 148 TQVGLVSNLDARVD------PIAVAFDPKDINSYHSIGTTSVYDSLGAEHVVTQYYVKTA 201

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +E    +                                       +  V +   +   
Sbjct: 202 PNEWTVNY--------------------------------------TLDGVQLTEQTTLT 223

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A    +      A  +   +             + QY +  +                
Sbjct: 224 FDAKGVLDPTTTKQAFDLTLPNGASNLQFEINFDKSTQYAAKYNNSSLSQDGYTSGELKG 283

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             L     L   Y +   +      +A  +    L   + N   W+  N +        S
Sbjct: 284 VRLDDNGMLYGTYTNGQEQLQGQVILANFSNPNGLSAVSNN--AWVATNTAGQAITGAPS 341

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 ++  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 342 TGTMGTVTGGYLEGSNVDTTAEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395


>gi|206558968|ref|YP_002229728.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315]
 gi|198035005|emb|CAR50877.1| flagellar hook protein 1 FlgE1 [Burkholderia cenocepacia J2315]
          Length = 413

 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/469 (9%), Positives = 101/469 (21%), Gaps = 61/469 (13%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +            N    +     +      L++
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVN--TQIGIGTSLNS 63

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                GQ  +  +  +L   ++ +              + S    +    +    +    
Sbjct: 64  VQQQFGQGTINTTNSSLDVAINGN-----------GFFQMSNNGVTTYSRDGTFQRDKNG 112

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
              +                 +  + + L+        +  T +       +        
Sbjct: 113 FIVDSQGRNLMGYAANAGGVINTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVPTKT 172

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
                D      +  I +   +  +  + +Y              +              
Sbjct: 173 PFSATDNTTYNYTTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQ------------- 219

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
                 G        +    G I++      +       Q                    
Sbjct: 220 -----GGATTDLGTITFDTSGAIQSTTTGTPATPTASLGQFQ------------------ 256

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                             +   Q ++  +    QY                      ++ 
Sbjct: 257 ----------FTVPNTDGSATPQKLTLDLTGTTQYGGKDGVNNLAQDGYASGTLTTYSIG 306

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               L  +Y +          +A  N    L+    N     E   S    +        
Sbjct: 307 ADGKLTGNYSNGQTAVLGLIALANFNNPNGLVNLGGNQYA--ESAASGVPQVSAPGSTNH 364

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 365 GTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413


>gi|313681187|ref|YP_004058925.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313154047|gb|ADR32725.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 445

 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/477 (10%), Positives = 112/477 (23%), Gaps = 35/477 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +    +           I  N+ N +   +    T                    +
Sbjct: 1   MTQGYYTGISGIQANQYGLDVIADNLANTNTVGFRGSSTEFAS----------------L 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F + L +  SA     +      L+       + +   T   + L  +   +   +S   
Sbjct: 45  FSEKLVSSGSAPTYDEIGAG-TRLQATTMNTQNGSLLNTDRFNDLAINGNGWFGVVSGQD 103

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
              T   N           A      R    + + +  + L  F  +      A    T 
Sbjct: 104 RYFTRAGNFVLDEYQKTDGAANSSVGRLTTTEGMYVTGTMLNNFAYDSQYNYSAKSDVTD 163

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +            V L   +E   I    R        TS                  N+
Sbjct: 164 TGAFKITASLNT-VPLTDANEQGPIELPTRLAYPTEPTTSTKFYGNLGTDVAERTMSANA 222

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            + +++ N I +     +      V    +        +V+   Q               
Sbjct: 223 ISPSNDQNRIKLVFTQSAVQPDQGVSWDVVATASSNDGTVLYDTQ--------------- 267

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  N       F    I +    +   +                            
Sbjct: 268 -YGTAVFNEGGGLESFSLPTINNDGAPVSVDLGSAFGGVISSAGPTISASSQSDGISGGT 326

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N  ++     ++  + +          V     +  L           + + +      
Sbjct: 327 LNKYSINSDGIIVADFSNGKQSTIGRIAVYHFQNDQGLTRSGSTLFSQSDNSGNPMFWTD 386

Query: 423 MKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              + V    IS  +     V ++  L+ +I ++++Y  + K +   D+M+Q  L  
Sbjct: 387 ANGEAVTGTTISSGHLENSNVRMEVGLTDMIVMQRAYQANAKTVTTVDEMIQKALSM 443


>gi|238028842|ref|YP_002913073.1| flagellar hook-associated protein FlgK [Burkholderia glumae BGR1]
 gi|237878036|gb|ACR30369.1| Flagellar hook-associated protein [Burkholderia glumae BGR1]
          Length = 664

 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/446 (12%), Positives = 118/446 (26%), Gaps = 24/446 (5%)

Query: 16  NASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDK 65
            A     +  +NI N     Y     +   S          P  VT VT + +       
Sbjct: 14  AAQWGINTTGQNISNQATPGYSVERVVYAESDGQYTPNGFLPSGVTTVTVQRQYSQYLSD 73

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            L+   +A           A                  IS     L++ S + S      
Sbjct: 74  QLNTAQAASSSLSTYSQMVATLNNYIGSPT--GGIASAISSYFSGLQNVSASASSAASRA 131

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T I NA  +     ++  E   +R   + +++  ++ +    +++  +N  I   +    
Sbjct: 132 TAISNAATLANQLTSAGSEFDALRQSVNTQLQSSVTQVNSLTTQIAQLNQQITVASQGGQ 191

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
             +  LDQRD  L  +  ++G   +V++N +  V  ++G  L             +    
Sbjct: 192 PPNQLLDQRDHALATLQTVVG-VQVVQSNGNYNVQMANGQPLVVGNTSYTMSAVPSPSDP 250

Query: 246 TSESNPIFIDGVVVSSN------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           +  +  +        +        GS +  G I  L+Q R   +   + +L  +A     
Sbjct: 251 SELTLGLQNTAAGSGAAGQMQVLTGSNITGGTIGGLIQFRSQTLDPAEAKLGAIAVSFAS 310

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             + ++ +  ++    G  +                +                D      
Sbjct: 311 QVNAQNALGIDANGNVGGDLFSVATPQTIANTNNTGDATITASFANGQQPPTSDYTLSYD 370

Query: 360 KFLWN-----VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +         + G    +         +           + TL        G+    
Sbjct: 371 GTSYTLKDRYSGGVIGTATSLPATLGGLKLSVDDATKLKAGDSFTLEPTRSALNGFASVG 430

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTV 440
              +              +   +   
Sbjct: 431 TPSTIAAASPVLATVGTSNAGSAAIT 456



 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/412 (10%), Positives = 100/412 (24%), Gaps = 11/412 (2%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
            +             ++++  +    +    I     +L+     L    +      NA+
Sbjct: 256 GLQNTAAGSGAAGQMQVLTGSNITGGTIGGLIQFRSQTLDPAEAKLGAIAVSFASQVNAQ 315

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
             +                  + I    +     ++              +         
Sbjct: 316 NALGIDANGNVGGDLFSVATPQTIANTNNTGDATITASFANGQQPPTSDYTLSYDGTSYT 375

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYT------SDGTTLFETVPRDINFEKMNSYTVT 246
            +D     +               + V         D  TL  T      F  + + +  
Sbjct: 376 LKDRYSGGVIGTATSLPATLGGLKLSVDDATKLKAGDSFTLEPTRSALNGFASVGTPSTI 435

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           + ++P+       ++   +  P            +    +      +     G+    + 
Sbjct: 436 AAASPVLATVGTSNAGSAAITPGTVTAGYQMPSTTTTLTYNAASKSLTGFPAGTTVTVNT 495

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +S  + G                  S          +N S    G  V        +
Sbjct: 496 TPPSSYPITGSTTQVPYDSTAGASLTITSTVQPPPSGVMNNVSMQITGSPVDGDTFTIAR 555

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             A           +  ++ +FD         TL     + +  +    +          
Sbjct: 556 GGASNDGRNAQALSNLVRSKVFD-----GGTSTLTTAYGSYVNGVGNTAAQLSAASTAQT 610

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            + + I++   +  GVN  EE   L++ +Q Y  + K+I     +  TLL  
Sbjct: 611 ALVSQITQQQQSVSGVNQDEEAVNLMQYQQMYQANAKVIQTASTLFSTLLGI 662


>gi|254785371|ref|YP_003072800.1| flagellar basal body protein FlgE [Teredinibacter turnerae T7901]
 gi|237685119|gb|ACR12383.1| Flagellar basal body protein FlgE [Teredinibacter turnerae T7901]
          Length = 813

 Score = 93.9 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/444 (12%), Positives = 117/444 (26%), Gaps = 13/444 (2%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             +    T+    S N N+   +     S    Q L     +L             P+  
Sbjct: 373 ASATTTATLSNLNSANDNLTVTLNSVQLSGDSLQALEAEINSLTNSTLPGISAALDPSGG 432

Query: 104 ISKLRDSLESY------SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
              +  ++         S +  + I  +       +++Q    SA               
Sbjct: 433 ALVITSAVGDDIRVSITSTDPGDSITVRGDQAAPAQILQVPPVSAGNYDADNNSIVVGGS 492

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
           +E++    +  +  V +    F+  +   A    +  DV L         +     + ++
Sbjct: 493 IELTLDEGYSMQNAVPDAVGIFQPFTSDPAD--PEFTDVTLNAFDPTDQGTYNSATSMNV 550

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK---A 274
                    + +   R        + +       + IDG  V     S  P   I+   A
Sbjct: 551 YDSLGVSHIMTQYFVRQEYDPNDPTTSPNHWVMHVQIDGRNVGDPDTSLPPPANIEPTLA 610

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
              +  +        L E   +      ++      +     +     I   +       
Sbjct: 611 SFNVFFNENGTLNELLTEDMLISNWVVLDQQGNPTGAMGPQNVLAGGSIVIPEPPTSSNF 670

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              +    Q  ++ S              +   +     +   Y +   +      +A  
Sbjct: 671 VIELAGTSQSGTDFSVDDTDQDGYASGRLSGLAIDENGVIFARYTNGEGQPLAQVALADF 730

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
                L         W E   S   ++          I         V+L EEL  LI  
Sbjct: 731 TNQQGLQPIGNTM--WAESFASGPPNVGTPQSGALGAIQSGALEESNVDLSEELVRLIIA 788

Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478
           ++++  S K I   D++ QT++  
Sbjct: 789 QRNFQASAKTIETADQVTQTIINL 812



 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/401 (9%), Positives = 88/401 (21%), Gaps = 6/401 (1%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           FN A +    AS        NI NA    + R             +    +   +     
Sbjct: 3   FNTALSGIRAASTDLTVTGNNIANASTIGFKRSRAEFGDVFATSVLGAGANAIGSGVQVE 62

Query: 67  LHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
             A +     +   +                                 + Y  N     L
Sbjct: 63  DVAQNFKQGNVAFTQNELDLAINGNGFFVLSDQGTPVYSRAGTFGLDDQGYVTNNVGARL 122

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                D+   +    +    +   +       +E  ++         +            
Sbjct: 123 QGFQADSTGNISGISDDILIQTSNLPPRQTTLVESVLTLDSTEPVLQSTGRRFTTLGNVI 182

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                   D     L   +  + ++               G +  +     IN +     
Sbjct: 183 GVTQAGLRDATTTNLTSNTFTLPLANDFATTPMTFDIQLSGASSGKNGTVSINLDIGEGV 242

Query: 244 TVTSES--NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             T  +  +   + GV+ S      +P+  I  +    D    ++  +   +        
Sbjct: 243 PATINAFNDLRTLTGVINSQIFSPTLPQTAIDVVANAVDYGGGVYGIEFTALQEGEGSQI 302

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
               P   N   +        +  +         +++          ++    G+ + + 
Sbjct: 303 QINTPS-ANMNQIGLNPATTSVAGIPAVDNGYPQQSVDFVDPDGDIVTYTALAGATAART 361

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +  + G            N N   D +     +V L  
Sbjct: 362 ASEMNAIQGISASATTTATLSNLNSANDNLTVTLNSVQLSG 402


>gi|326392863|ref|ZP_08214093.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325991095|gb|EGD49857.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 89

 Score = 93.9 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 45/84 (53%)

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              T  ++AR+ I  L  +   ++ +    QV+   I  +  +  GV+L EE++ ++K +
Sbjct: 1   NGATFDDFARSLISNLGVDAQQANMMQQNQQVMVKQIDLNRQSVSGVSLDEEMTNMLKYQ 60

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           +SY  S ++I   D++L TL+  +
Sbjct: 61  KSYVASARVITVMDELLDTLINRM 84


>gi|170744543|ref|YP_001773198.1| flagellar hook protein FlgE [Methylobacterium sp. 4-46]
 gi|168198817|gb|ACA20764.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium sp. 4-46]
          Length = 407

 Score = 93.9 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/480 (10%), Positives = 121/480 (25%), Gaps = 73/480 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSLL       +  N  S + +++  N++NA    Y R  T  +    + +         
Sbjct: 1   MSLLGALRTGMSGMNAQSNRISTVAENVQNAGTTGYKRVSTEFSSLLLSSSATG------ 54

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                                     + +       + S    ++   +           
Sbjct: 55  --------------DYNSGSVETVQRRAVSDEGARVSTSSKSDLAIAGNGFFVVKDASGA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +      +     F  +A       +  + +    +++L             +   
Sbjct: 101 SYLTRAGNFVPDGSTGTFKNAAGFTLMGYSLKNGQASPTLNSLDG-----------MVPV 149

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             S          +  L   +       T                  ++ + + +  +  
Sbjct: 150 NISALGMKASASTKGALTGNLDSTAAAVTSGAVPAGSNYSKKTSLVTYDNLGKAVTLDIY 209

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T  +  +    D    +S   S +    +                            
Sbjct: 210 LTKTGDNAWSASVYDASNSASFPASPLTTIPLG--------------------------- 242

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                     +    G       + +   L               ++ + ++     SK 
Sbjct: 243 ----FVNGKVTSGGTGSVTVPNGQPVSLDLTGMTQ---------LASATDIKGSADGSKA 289

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                   A    +   Y D+        P+A +++   L   A N         S +  
Sbjct: 290 SAVTGAEFAADGTVYAVYEDNSKVAAFKIPIADVDSPDNLKPRAGNVYET--TLESGALQ 347

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   +Q     I         V++  EL+ +I  +  Y  ++K+ M +++ML TL++  +
Sbjct: 348 VGFANQGGRGGIVSGALEQSNVDVSTELTSMIASQTVYTANSKVFMTSNEMLDTLMQLKR 407


>gi|170742312|ref|YP_001770967.1| flagellar basal body FlaE domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168196586|gb|ACA18533.1| flagellar basal body FlaE domain protein [Methylobacterium sp.
           4-46]
          Length = 456

 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 103/491 (20%), Gaps = 46/491 (9%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVV 53
           M + +    A +     +    +I  NI NA    Y R DT             +    V
Sbjct: 1   MDVFSAMQTAVSGLQAQAFSLNNISGNIANAQTTGYRRIDTTFADLLAEQPNDRQTSGSV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRD 109
              S+  N     + +             F  +              +            
Sbjct: 61  AASSQFTNTLQGNIASTGITTNMALNGGGFFVVRTPSATSGGQPSFTSQDLYTRRGDFAV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + Y  N +   L    +D                Q + A A   I    +      S 
Sbjct: 121 DKDGYLVNGAGSYLVGQSLDPRTGQATGNGVIRIGNQALPAQATTTISYAAN----LPST 176

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                 A+    A                   S+         +   +  Y++ G  +  
Sbjct: 177 PGTTGPAVLGALAGGDVRVMSGTSASPATVAASDSGSFLASSLSGGSLTAYSAAGGPVNL 236

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +         ++       N  +       S   +    G             P     
Sbjct: 237 QLRWAKVAAADSAAGTGDTWNLFYAKQNGTDSTATAWTNAGTAFTFNASGQLTTPA---- 292

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                                  +     +      L        S  +          +
Sbjct: 293 ---------------------GGSATIPNVTVDGVPLGTLTLNTASGGLTQYGAAGGQVT 331

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 + S         +     +   Y +          +A  N    L   +     
Sbjct: 332 TNTLQQNGSASGTLRSLAVTSDGRVTGTYSNGTTATLAQVGIARFNAPDALKAES----- 386

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            L             S +    +          +   E S LI  +Q+Y+ + +++    
Sbjct: 387 -LGNYAQTVESGGPVSGLAGTTVVGGNVEQSNTDTANEFSKLIITQQAYSANTRVMSTAQ 445

Query: 470 KMLQTLLEGVK 480
           +M+  L+  ++
Sbjct: 446 QMMSDLVNIIR 456


>gi|163785037|ref|ZP_02179764.1| flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879693|gb|EDP73470.1| flagellar hook-associated protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 166

 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 1/152 (0%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
             + I  +  +  Q  +       GG  +   L+N +  A           S        
Sbjct: 15  YAKDIKLSPSIKIQNDTGNFISSIGGINNYTSLYNPEEKALLTTTTGLQIGSTYYKLNSI 74

Query: 390 PVAGINTNVTLLEYARN-SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
               +    +  E         +    SD+ +    ++ + + +        GVN+ EEL
Sbjct: 75  DNLSLLDTKSFQELYTKKFTSEIGFEISDAKNRLDANKNLRDAVQSKIEEKSGVNVDEEL 134

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             L+K +++Y  + K+I  TD++LQT+L  VK
Sbjct: 135 VNLMKYQRAYQSAAKIINVTDELLQTILGLVK 166


>gi|83576781|gb|ABC23332.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 472

 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/481 (10%), Positives = 120/481 (24%), Gaps = 37/481 (7%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--------RSEN 59
           N A +  N  S   ++I  N+ N+    Y   +             +          +  
Sbjct: 21  NVAVSAMNAQSSSVSAISNNLANSSTIGYKTSNASFYSLVTGTGSTSNFTGAGVVASATQ 80

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +   V+    +        +    + +   +++ Y             + +    N +
Sbjct: 81  NVINQGVIVGTQNVTDLAVDGKGMFIVTDRSGSNELY----YTRAGDFYPNADGDLVNSN 136

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D     + N   S   ++ I            S +                
Sbjct: 137 NYYLQGYPTDRNGVPLTNTGNSGASLETINLAGATGAAKATSEMSIQAVLPAQATAGDST 196

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                       D        ++  + +     ++    +   D                
Sbjct: 197 AVPPVAAYTSSSDVEIYDSLGVAHTMTVKWTKMSDTKWTMTLYDPK-----------LSS 245

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +   T   +        V +N G       I   ++  D  +    + L         
Sbjct: 246 DMTGDATGAISSTTTGVTDVPANAGPPATSHGIAVDVEFTDQGLLKTPSVL--------- 296

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
              +  P A N        IA  +                 + +   +   +   G    
Sbjct: 297 -ALKITPDASNGTGAAISEIALNLGTAGKANGLSTYSNEDSDGKPAVDLKKVVQDGVTYG 355

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
            +  N  + AG   +  ++ +  +      P+A  +    L     +   +    +S + 
Sbjct: 356 TYYSNTISKAGL--VYANFTNGISYPIYQVPLAMFSNVNGLEAV--SGTAYSATVKSGTP 411

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       +S     +  V+   E S LI  +Q+Y+ + ++I    +M Q L+   
Sbjct: 412 TYVTAGTGGSGGVSSGSVESSTVDTAAEFSKLIVSQQAYSAATQIISSNQEMFQNLISAK 471

Query: 480 K 480
           +
Sbjct: 472 R 472


>gi|218670905|ref|ZP_03520576.1| flagellar hook-associated protein FlgK [Rhizobium etli GR56]
          Length = 283

 Score = 93.6 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 156/281 (55%), Gaps = 15/281 (5%)

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-GK 271
           +NNDMV+ T DGT LFETVPR + F+  + YT +   N ++IDGV +   +GS     G 
Sbjct: 1   DNNDMVLSTPDGTILFETVPRKVTFKSQDVYTASIVGNSVYIDGVALPLGKGSTTTGQGS 60

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           +++LLQIRD + P FQ QLDE+AR L+  F E++  A  +        + G  D      
Sbjct: 61  LQSLLQIRDEIAPNFQKQLDEIARGLVSLFKEQNTAAPPAYVPGLFTWSGGTIDTGATAV 120

Query: 332 QGISETICVN----PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
            G++ TI V+         +P  LRDGG  +   + N   ++GY   ++    + + +  
Sbjct: 121 AGMASTISVSTRVITSQGGDPMRLRDGGVNATGVVLNTSGVSGYTAELDRLYTAMSADID 180

Query: 388 FDPVA----------GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
           FDP A          GI++NV+++EYA NSIGWLE+ RSD+      +    +   E+YS
Sbjct: 181 FDPAAGAPVGFDATTGIDSNVSIMEYATNSIGWLEQYRSDATSASETTAAALSRSDEAYS 240

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           N  GVNL EEL+ L+ +EQSY  + K++   D+M Q+LL+ 
Sbjct: 241 NETGVNLDEELTLLLDIEQSYKAATKILNVIDEMFQSLLDI 281


>gi|47566136|ref|ZP_00237174.1| flagellar hook protein flgE, putative [Bacillus cereus G9241]
 gi|47557053|gb|EAL15383.1| flagellar hook protein flgE, putative [Bacillus cereus G9241]
          Length = 409

 Score = 93.6 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/480 (9%), Positives = 105/480 (21%), Gaps = 73/480 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N      +    NI NA    Y ++  M                +  +
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMF---------------DDLL 45

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-YNNSPTHYISKLRDSLESYSKNLSED 121
           ++  + A           +S     +M        + + T    K + ++E     +  D
Sbjct: 46  YNNSIGAKGDGNYAGTNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGD 105

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
             G  +    +      +       + +             +             I   T
Sbjct: 106 SKGGNMEFTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVD---LSGIPGPLQIPMGT 162

Query: 182 ASKHDAHDFLDQRDVLLQKISEII-GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           A           +  +    S+I   +       N   +      T        +     
Sbjct: 163 AIGGIQTTKGTIKGNIPVNESKITQDLPFYDDAGNTWTMRVEFTKTSEHEYTYKVQRRND 222

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           +      E          +  N        +  A +      +                 
Sbjct: 223 SVKDSKFEEVTGAGSTGTLKFNNVGNPNPVQQGANIPFNGGTI----------------- 265

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                   D          +T+ V        + ++D       
Sbjct: 266 ----------------------NLDFSKLTNHPTDKTLSVTDVDGRAAATVKDCFIADGG 303

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
           ++    +              F            N   T      N+ G L    S  + 
Sbjct: 304 YVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTAT------NTTGILALGASGQNG 357

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                      I         V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 358 AGK--------IRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 409


>gi|322832564|ref|YP_004212591.1| flagellar hook-basal body protein [Rahnella sp. Y9602]
 gi|321167765|gb|ADW73464.1| flagellar hook-basal body protein [Rahnella sp. Y9602]
          Length = 414

 Score = 93.6 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/476 (10%), Positives = 104/476 (21%), Gaps = 67/476 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  + AS     I  NI N+    +                       +  +N 
Sbjct: 2   SFSQAVSGLSAASTNLDVIGNNIANSATVGFKTATASFADMFAGSQTGMGVKVAAVTQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D      S  +        F  L +                 +          N+    
Sbjct: 62  NDGTTTNTSRGLDVALSGNGFFRLTDT------SGAVYYSRNGQFSLDANRNLVNMQGLS 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                                            ++   +N      +A
Sbjct: 116 VTGFP-----------------------------ATGTPPTIAAGAQPVALNIPTTLMSA 146

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                   +   +     I      S+    + + V   +   +       ++ F K ++
Sbjct: 147 KATTVGTMVANLNSTDTAIPAAKTFSSSDDTSYNYVNSITTYDSQGNAHDNNVYFVKTSA 206

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                 +    + G             GKI A+       +    N        L  +  
Sbjct: 207 NNWDVYAQDGSVTGS----------TAGKIGAMQFDTSGALVSTTNAAGVANAGLALTLP 256

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                 G            G                    Q   + S             
Sbjct: 257 MNTATNGTVTPQTVSLDFTGS-----------------IQQSTGSDSIGSQTQDGYAAGQ 299

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y ++  +      ++  +    L     N   W     S      
Sbjct: 300 MTGYTINDDGTISGTYSNNKTQLLGQIVLSNFSNPEGLKSEGDNV--WTATASSGQAVTG 357

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +  Q     ++     +  V+L  EL  +I  +++Y  + + I   D +L TL+  
Sbjct: 358 IAGQGGLASMTSGALESSNVDLSAELVNMIVAQRNYQSNAQTIKTQDSILNTLVNL 413


>gi|255601427|ref|XP_002537672.1| Flagellar hook-associated protein, putative [Ricinus communis]
 gi|223515502|gb|EEF24710.1| Flagellar hook-associated protein, putative [Ricinus communis]
          Length = 274

 Score = 93.2 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 95/281 (33%), Gaps = 18/281 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQ 55
           ++ N A +    +    ++  +NI N   K Y R+  + T          +   V+V   
Sbjct: 2   SILNNALSGAIASQLALSASSQNIANLQTKGYTRQGALLTALAPSTGAKEAGNGVSVTAL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              + +   + +   +S +G +   Q +    E +  DD  N   +  I     +L + +
Sbjct: 62  MRFSDSYKTQQMWRSASDLGARSQTQPYLTQLEQVMGDDTAN--LSSGIDGFFAALNAVA 119

Query: 116 -KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + +   L + V+  A  + Q FN+             ++    I +    ++ +  +N
Sbjct: 120 GVDPTSTPLRQQVLTAAGLLAQRFNSMNNVYNAQLQSVRQQRTALIDSANSTIASIAALN 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I    A+  +A   +D RD  +  ++  +G+    + +    V    G +L       
Sbjct: 180 AEIANANATGSNASTLIDARDQAIDSLASQMGLEVSDQPDGTRDVSLKTGQSLVLGGIAG 239

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                       + S    +       +  +    G++  L
Sbjct: 240 RLSVS------GAASQTFSLTFADTKFDLDTTRAGGQLGGL 274


>gi|227871683|ref|ZP_03990096.1| flagellar hook-associated protein FlgK [Oribacterium sinus F0268]
 gi|227842482|gb|EEJ52699.1| flagellar hook-associated protein FlgK [Oribacterium sinus F0268]
          Length = 594

 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/306 (10%), Positives = 90/306 (29%), Gaps = 27/306 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
             + F+ A +      ++   +  N+ N + + Y R++  T+                  
Sbjct: 5   TFSGFDTALSALRMNQKKLDVVGHNLANMNTEGYTRQELKTSSINYENPTSFYMNSNDVN 64

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V +   R       D      +        +         +  D+   N       
Sbjct: 65  VGFGVAMDEVRQLRDQFLDGQYRTQNGKSSYNESIGESLKSLS-LFLDETKVNGIRSSFD 123

Query: 106 KLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD-------ADKEI 156
            ++ SL +        + +    ++   + +    N++A  + +   +        +   
Sbjct: 124 DIQRSLTNMQDPSKVQDPVYEGELMSRVQAMTTLMNSAAESIHQAEKNEFHKIDGTNTSE 183

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
              I  +   +S++  +N+ IK      + A +  DQR++ L ++S+ + I     +   
Sbjct: 184 NGAIQKINSLVSDIGDLNNRIKKNQLLGNPALELQDQRNLKLDELSKYVPIEVEHFSEEY 243

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                              N +  + +      N ++ D    +  +   +         
Sbjct: 244 SSPTPPTTRYRIYNYDSAGNVKGRSDWPEDVRVNLVYRDSSAGNGTEVKKITLVNGAIDA 303

Query: 277 QIRDSV 282
            ++D+ 
Sbjct: 304 DLQDAS 309



 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 5/210 (2%)

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDLDNKL 330
           +KA  ++       +  +LD +A     + +E +     N   V        I   +   
Sbjct: 389 LKASNEMNSYSYDFYMGKLDLLAETFTKNMNEVNKKGNTNYAGVTNPNHVLMINKDNAGG 448

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               + T       R   +     G+   +   +  N     D +    +          
Sbjct: 449 NDPSNVTAANIGISRGWVNGTTHIGTNGFRNGASATNRGDTTDTVLEMLEQMTSPM---- 504

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +   NT     +Y  N    L  +   + +    ++ V   I+ S     GV+L EE + 
Sbjct: 505 MKMNNTKTNYADYMNNVSTTLATDSYANKNAQEINKAVLEGINNSRDQLSGVSLDEEAAN 564

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++    SYN + +L+   +  L+TLL   +
Sbjct: 565 MMTYSSSYNAAARLMTTLNDTLETLLAIGR 594


>gi|328545575|ref|YP_004305684.1| FlgE protein [polymorphum gilvum SL003B-26A1]
 gi|326415316|gb|ADZ72379.1| FlgE protein [Polymorphum gilvum SL003B-26A1]
          Length = 418

 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/485 (11%), Positives = 124/485 (25%), Gaps = 72/485 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE-- 58
           MSL+   N A +     SQ  +++  N+ N+    Y    T  T      T  +      
Sbjct: 1   MSLMGALNSAISSLYAQSQALSNVSSNLANSQTTAYKASSTSFTSLVAGTTSSSSGGVVA 60

Query: 59  ---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              +      +L + SS+         F  +   +S       +      +       Y 
Sbjct: 61  STRSSVSEQGLLVSSSSSTHLAIEGSGFFVVSSEVSG----GQTYYTRNGEFEIDANGYL 116

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N    +LG     +   V      S   +      +       ++           +  
Sbjct: 117 TNGGYYLLGWATDASGNPVAGTSEASLVPIDVDSVKSSVGATSNVT-----------MQA 165

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +    A        ++  D L    +  +  +    N  +M        TL        
Sbjct: 166 NLPADAAVGDSFDTTIEVYDSLGTTNTITVTWTKTDANTWEMSFADP---TLAGGTAASG 222

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                      +    + +     +    +    G   + + +    +    N L + A 
Sbjct: 223 TVTSTPVTITFNSDGTLAVTDPSPAELTIAGWTTGAADSAIALNLGTLGAA-NGLTQYAS 281

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                +     I  +                                             
Sbjct: 282 GSTDPYIAIQSITQD--------------------------------------------- 296

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     +   + +   +     PVA       L E +         + 
Sbjct: 297 -GLAYGALTGVEIGADGSVTAFFDNGEQRVIYKIPVATFPNANGLTEMSNGIYAR--SSY 353

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  LH+        I+  Y      +   E S ++  +Q+Y+ +++++  +++M Q+L
Sbjct: 354 SGNSTLHLAGTGGVGTINGGYLEASTTDTSTEFSRMLTAQQAYSAASQILSASNEMFQSL 413

Query: 476 LEGVK 480
           ++ V+
Sbjct: 414 MQAVR 418


>gi|134300239|ref|YP_001113735.1| hypothetical protein Dred_2400 [Desulfotomaculum reducens MI-1]
 gi|134052939|gb|ABO50910.1| protein of unknown function DUF1078 domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 856

 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/438 (10%), Positives = 101/438 (23%), Gaps = 4/438 (0%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             PEN+T     + N  +  K        +       S     +  ++            
Sbjct: 421 TVPENMTATNATAGNVTITGKYSDTSDGTVSVVYSEGSATTTPDPANSLAGSPTVNASKY 480

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                +      N + D L           +        +   +  D         +N  
Sbjct: 481 YNTPATWNLKYDNATSDWLLDKGDGTGYNSITFTGDIYTDPSGVEIDKTGLTPTSDNNWD 540

Query: 165 -RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S    ++      T S  D     +   + +  +     +        ++      
Sbjct: 541 ISLTSGSISISGVSGAVTLSNGDTSATYNGLTIDVSDVISTGTVQNGDTWTYNVKADKPS 600

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                      + F  + +    S    I I   V          KG   A    +D  +
Sbjct: 601 TNVAVTWNIDHLEFSTVGTPKDGSTIPQIRIKDAVDLIGYVDRTEKGVNSADWSEKDFFI 660

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                +    A     +         + +      I   I +   K+       + +   
Sbjct: 661 EYNGAKYTFTAGEKKEAGFGNIISGESLKIALEKLIDKKIGENKIKVDYMNDGKLVLQTI 720

Query: 344 YRSNPSFLRDGGSVSK-KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                                                           +        L +
Sbjct: 721 DNGEIGETPSVNIGGSHAADLIGDKPDKVDGEAASVTPPPQDTMGVIKLVTFQNPEGLEK 780

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
             RN  G      S        +Q  F  I+  Y     V+L EE + +I  ++ Y  + 
Sbjct: 781 AGRNLFGT--SVSSGEPKQGQANQSGFGTINSGYLEMSNVDLTEEFTNMITTQRGYQANA 838

Query: 463 KLIMFTDKMLQTLLEGVK 480
           ++I  +D +L+ L++  +
Sbjct: 839 RVITVSDSLLEELIQLKR 856



 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/446 (8%), Positives = 102/446 (22%), Gaps = 28/446 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   N   +      NI N +   Y         +                
Sbjct: 1   MLRSLYSGISGMRNHQTRMDVTGNNIANVNTNGYKSSRVNFQDT---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
             + + +  +     ++       ++    +     +   T  +    +     S + + 
Sbjct: 45  LSQTVRSAGNGTNPAQVGSGMSVGSVSNNFTQGPMQSTGRTLDLGIQGNGFFVVS-DGTN 103

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-RFLSELTVVNDAIKF 179
           +   +  I   ++     N     VQ +     + +   +S +       +   N A + 
Sbjct: 104 EFYTREGIFFVDKQGFLVNGEGLRVQSLAGQDIRVLNGPVSTINIGPDGAIAGTNTAGQP 163

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S +D+   +        K +       +       +  +     L E     +  + 
Sbjct: 164 LKFSNNDSQAIITPAQQSSIKGAPKYTTPKVEEATIKGIAMSPVTQPLEE---AMVRGDS 220

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +                + +         G          + +     Q+     +   
Sbjct: 221 NSPDVAPLGITDSVTPIDMSTDQLTLKYSDGT-----NTYTATLNTGLTQVKSWYDLASQ 275

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +  +       +         I   D     G+      +         +  GG+  K
Sbjct: 276 LQNAINTYENPPGSGTFPLKDKVIVSYDGSPNGGLVFQTKTSNVTPGVIPSIEIGGAGVK 335

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +++  V   A            +     +         VT ++      G       D+ 
Sbjct: 336 RYMGGVATSALSDTGKEVVTKDWTGKTFYIDTGNGWEQVTTVDDFSKIGGAAGSTGLDAV 395

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQ 445
                       + ++ +   G N+ 
Sbjct: 396 TSGEDLAQKLQALLDARTTIPGTNIT 421


>gi|157959902|ref|YP_001499936.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345]
 gi|157844902|gb|ABV85401.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC
           700345]
          Length = 402

 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/474 (9%), Positives = 113/474 (23%), Gaps = 73/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     +Q   +I  NI N+    +    +  +                     
Sbjct: 2   SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNV-------- 53

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                                +                +    +     S         +
Sbjct: 54  -----------------MSTSQNFSMGGSLTYTGRQLDMGIQGEGFFVLSGQDGSTSYAR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + N +      + +   +Q     A   +            +   V D      A   
Sbjct: 97  AGMFNQDADGYITDPAGNRLQGYSIGATGNL------------QNGNVTDLQVQTGALAA 144

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A   +     L  ++  I   ++    ++    ++S     F+++  +    +    T 
Sbjct: 145 QATSTIGLTSNLDARVEVIDPATSPFDPDDASTYHSSSTIAAFDSLGNEHALTQYYVKTA 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            ++ +  +       +  G                                      E D
Sbjct: 205 DNKWSVHYNMDGTDVTPVGGH----------------------------------TLEFD 230

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +              +       ++ +   + QY ++ +      +       N 
Sbjct: 231 SNGMLTTGNDITLNITDAAIIGGASNMELALSFDKSTQYAADYNNSSLNQNGYTSGELNG 290

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     L   Y +   +      +A  +    L+  + N   W   N +    +   +
Sbjct: 291 IRIDDNGMLYGTYTNGQEQIQGQVVLADFSNPNGLVPTSNN--AWTASNAAGQPIIGTPT 348

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +S  Y     V+   E+  L+  +++Y  + K++     M Q LL  +
Sbjct: 349 TGTLGGLSAGYLEGSNVDQTAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLNAI 402


>gi|86136709|ref|ZP_01055287.1| flagellar hook protein FlgE, putative [Roseobacter sp. MED193]
 gi|85826033|gb|EAQ46230.1| flagellar hook protein FlgE, putative [Roseobacter sp. MED193]
          Length = 388

 Score = 92.8 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/443 (10%), Positives = 111/443 (25%), Gaps = 60/443 (13%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEM--MSADDHYN 97
           +   S    +     + N  + D+   L   +++       +    +  +  +   +   
Sbjct: 2   VVGSSGGRYSAGGVSASNMRLIDQRGPLVGTNNSTDLAVSGRGMLPVASLTEIEGGNGSP 61

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                     R + + Y    S  +L     +    V      +A  ++ ++ + ++   
Sbjct: 62  TMLMTTTGSFRTNADGYLTTNSGLVLLGWPANPDGTVSDGPRDTAEGLEPVQYNMNQLTG 121

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
              +N+         VN       A        +          S+ +GI+         
Sbjct: 122 EPTTNV------GLGVNLPATDTEAGSAGTVRNMTVEYYDNLGSSQTLGITYTP------ 169

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                                   +  +T  ++   + G    +   S    G + ++  
Sbjct: 170 -------------TVPATGTSNEWTMQITDSASGGAVIGEYTMTFNDSRTAGGSLASVTA 216

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +           +           +       +         A      D      +   
Sbjct: 217 VSGGAYDPATGSVVVNVDGGPMEINLGMIGESDGFTQLSDTFAPASVTKDGSEVGTMVGV 276

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                 Y            + K  L +V NL G   L N                     
Sbjct: 277 EVDPQGYVRANYDSGASRVIFKIPLVDVPNLNGLKSLDNQ-------------------- 316

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
                       +L  + S S+ L          ++         ++  EL+ +IK +++
Sbjct: 317 -----------TYLPSSDSGSYFLWDAGDGPTGEVASYAQEESATDVATELTDMIKTQRA 365

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y+ + K+I   D+MLQ      +
Sbjct: 366 YSSNAKVIQTVDEMLQETTNIKR 388


>gi|46205094|ref|ZP_00049039.2| COG1256: Flagellar hook-associated protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 271

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 9/269 (3%)

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS-SNQGSAVPKG 270
           R N D+ +YT  G TLF+  PR + F   +++   ++ + + IDGV V+ +     +  G
Sbjct: 3   RANGDVALYTDGGVTLFDRGPRAVGFAPTSAFAAGTKGSAVIIDGVAVTGAASPMPLASG 62

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           +I  L  +RD     ++ QLD +A  LI +F+E D +        GLF A G   L    
Sbjct: 63  RIAGLAALRDQTAVTYEAQLDALAGGLIDAFAETDAVPPLGAPKAGLFTAGGSATLPAAS 122

Query: 331 C-------QGISETICVNPQYRSNPSFLRDGGSVSKKFLW-NVKNLAGYPDLINHYCDSF 382
                     I+    V+P    + + LR GG     ++       A Y   +     + 
Sbjct: 123 AAGRTGLASTIAVNAAVDPDRNGDLALLRSGGMNGTDYVDPAAGGDAAYTGRLRGLVSAL 182

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +    DP   + T   L   A  S GWLE  R D+       + +    +E+ SN VGV
Sbjct: 183 GQTRSLDPALDLGTASDLPSLAAASAGWLEAQRKDASASASYQKTLLTRANEALSNVVGV 242

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           N  +E +  +++E+SY+ S K+I   D +
Sbjct: 243 NGDDETALALQLERSYSASAKIIAVIDDL 271


>gi|182680457|ref|YP_001834603.1| flagellar hook protein FlgE [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636340|gb|ACB97114.1| flagellar basal body FlaE domain protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 415

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/480 (9%), Positives = 117/480 (24%), Gaps = 65/480 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +    + +     S + +++  NI N++   Y + DT        +          
Sbjct: 1   MSLYSALTASVSGMAAQSNKLSAVSDNIANSNTTGYKQADTEFETLVNGL---------- 50

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                      +                + S     + S    +    +     + +   
Sbjct: 51  -----------NKTSYDAGGVKTTIRYNISSQGQLTSTSSATDLGIQGNGFFVVTDDSGT 99

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L +             NT+  ++  +  +           L                 
Sbjct: 100 KYLTRAGSFTKNADGTLSNTAGYKL--MGYNLTSGSASSADGLGGLEVVDLTSAGLQAAP 157

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + S   A +     + +   +      ++   +   +V Y + G  +   +         
Sbjct: 158 STSGTLAVNLPSNGNAITTALPSANSATSTYNSKTSLVTYDNLGNAVTLDMYFAKTGTNS 217

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
              ++ + ++     G   +++  S                                   
Sbjct: 218 WEMSIYNAADAAAGGGFPYATSALS----------------------------------- 242

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                          G               Q  +  +    Q  +  S      + +  
Sbjct: 243 -----TQTLTFSPSDGSLTTPTSASFTIPNGQAFTLDLSQTTQLAAGFSVSAQNANGNAP 297

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 ++     L   Y +         P+A + +   L+    N   +     S S  
Sbjct: 298 SGLKSISIGTDGVLSKVYQNGTTVAAYKIPLATVASVDNLMVGTGNV--YEANGDSGSII 355

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +          I  S   +  V+L  +L+ +I  ++ Y  ++K+      +L  L+  VK
Sbjct: 356 IGDAGTNGLGSIQSSQLESSNVDLAAQLTDMIVAQRGYEANSKVFETGSTLLTELVNLVK 415


>gi|134283656|ref|ZP_01770355.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305]
 gi|134245065|gb|EBA45160.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305]
          Length = 404

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/465 (10%), Positives = 98/465 (21%), Gaps = 61/465 (13%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
              AS     I  NI NA+   +       +    N                        
Sbjct: 1   MAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVN----------------- 43

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                                           +      + S +     +          
Sbjct: 44  ------------------NPIGIGTMLASVQQQFSQGTITSSTSSLNVAINGNGFFQMSN 85

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                 +     Q               +   ++     +N       A+          
Sbjct: 86  NGVTTYSRDGTFQ--------------RDKNGYIVNSQGLNLMGYAANANGVINTAATVP 131

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  I+         + N +            + VP    F   +  +    ++   
Sbjct: 132 LQAPTTNIAPTATTKITGQFNLNS----------QDAVPATTPFNYTDPTSYNYTTSVQV 181

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
            D +  S N      K       +            L  +     G+ +     AG    
Sbjct: 182 FDTLGGSQNVNLYFVKSATSGQWEAYAGPAGKTPTDLGSVKFSTAGTITGTSTPAGVPTT 241

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G F             Q ++  +    QY                 +    ++     
Sbjct: 242 NVGQFSFSIPTTTGAANPQNLTLDLTGTTQYGGKNGINNLAQDGFASGVLTTFSIGADGK 301

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           +  +Y +          +A  N    L+    N   ++E   S    +          + 
Sbjct: 302 VTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQ--YVESAASGVPQISAPGSTNHGTLQ 359

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            S      V+L  +L  LI  +++Y  + + I     + QTL+  
Sbjct: 360 GSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 404


>gi|229918635|ref|YP_002887281.1| hypothetical protein EAT1b_2922 [Exiguobacterium sp. AT1b]
 gi|229470064|gb|ACQ71836.1| protein of unknown function DUF1078 domain protein [Exiguobacterium
           sp. AT1b]
          Length = 303

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/295 (8%), Positives = 74/295 (25%), Gaps = 5/295 (1%)

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
              + +  L    + I  ++T       +         +      +     +N   V   
Sbjct: 11  GLKNFQSKLDVVGNNIANVNTFGYKKGRVTFKDLVSQQVGSASAGNATTGGVNPKEVGLG 70

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
                +D V       +      +    +   + +   Q Q          +        
Sbjct: 71  GTMATVDNVYNQGAMQNTGRALDVGISGEGFYATMVNGQIQYTRAGNFYTDNQGNLVTGD 130

Query: 309 GNSENVPGLFIADGIKDL---DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           G                           +   +          +     G +        
Sbjct: 131 GTYLIGSQTNTLPPSGVAGVAATPTAANMGANLDAPYLAADAGTQTVKYGRIKIPTDAKS 190

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +     +   +   +   +  + N  L +   N   +++   S +    +  
Sbjct: 191 LSIGKDGQVSFVAANGELRIAGYIVTSNFSNNAGLSKVGAN--NFVQSQNSGAPQFGVPG 248

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 +         V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 249 AGGRGELVSGALEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 303



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 26/147 (17%), Gaps = 27/147 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +L       +   N   +   +  NI N +   Y +                     +  
Sbjct: 1   MLRAMYSGISGLKNFQSKLDVVGNNIANVNTFGYKKGRVTFKDLVSQQVGSASAGNATTG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V         T  + +       +     A+             E   A          
Sbjct: 61  GVNPKEVGLGGTMATVDNVYNQGAMQNTGRALDVGISG-------EGFYATMVNGQIQYT 113

Query: 103 YISKLRDSLESYSKNLSEDILGKTVID 129
                    +          L  +  +
Sbjct: 114 RAGNFYTDNQGNLVTGDGTYLIGSQTN 140


>gi|91791429|ref|YP_561080.1| protein of unknown function DUF1078-like protein [Shewanella
           denitrificans OS217]
 gi|91713431|gb|ABE53357.1| protein of unknown function DUF1078-like protein [Shewanella
           denitrificans OS217]
          Length = 392

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/477 (9%), Positives = 118/477 (24%), Gaps = 96/477 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----VVTQRSE 58
           +L  F    +  N+ S+   ++  NI N +   Y   D+       +             
Sbjct: 1   MLQAFYTGLSGLNSYSKNLDNVSNNIANMNTAGYRGMDSFYQALGGDSDKPGLGAQISGL 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   +    +          F AL +                 +      +   + 
Sbjct: 61  GYRFSVGDIRQTGNDFDLAITGTGFFALLD-------GEKVFYTRTGQFEFDQNNVLVD- 112

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                                 S  ++ +I   + + I+   +        L+ ++D   
Sbjct: 113 -----------KNTGFKVAGIDSNGQLSEINLLSYQAIKPTATTKLSLTGNLSPLDD--V 159

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            + +S    +   ++ D+ ++  +E         N   + +    G  L           
Sbjct: 160 HQISSAKMINSLGEEVDLSIKFTNE----KATFPNQWKVEILDDKGIVLH---------- 205

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
                               V          G    +  + DS        +        
Sbjct: 206 -----------------SDSVKFGPDGTPEVGSGSFIFNLADSSGNTTPIDITVGTIGDF 248

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            + ++      +S              L     +G+ + +  +   +   +     G   
Sbjct: 249 SAVTQTSATGVDSN-----------VTLHAVDGKGVGQLVKRSFDPQGRVTLNYSNGDKV 297

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F   + +      L       F  + +   V G        + A +SI          
Sbjct: 298 TPFTIAMVDFDDISTLSIESGTVFKASDLESRVLGKAGEGRFKQLATSSI---------- 347

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
                                  V+L +E + ++ +++ Y  S++++   ++M++ L
Sbjct: 348 -------------------EMSNVDLSQEFADMLVIQRGYQASSRILNVANQMIEQL 385


>gi|330863345|emb|CBX73468.1| hypothetical protein YEW_ES20630 [Yersinia enterocolitica W22703]
          Length = 298

 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 85/251 (33%), Gaps = 12/251 (4%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVTQRSE 58
            AQ+    A    ++   N+ NA+   Y R+    +               V V   +  
Sbjct: 6   IAQSGLQAAQAGLSAAAMNLSNANTPGYSRQRAEQSAVGTTGNNAYSAGNGVNVDAFKRL 65

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           ++          SS        Q+  +  E    DD  N      +    +SL S S N 
Sbjct: 66  SEQYLVSEEWKASSDHHYFSASQNALSKLEYSLGDD--NTGVAAGMRAFFNSLSSASNNP 123

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           S     + VI+ A+ +V NFN+  +  QK + D   +    IS +      +   N  I 
Sbjct: 124 SSPAYREQVINEAKSLVLNFNSFHQSAQKQKQDIATQRTALISQVNSATKSIDEYNQKIV 183

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +   + +   DQRD L++K+SE++ I      +    +   +G  L           
Sbjct: 184 KLGSDGTNTNILQDQRDQLVKKLSEMVDIHVTKGADGGYDISLKNGLPLINGQTVATLAL 243

Query: 239 KMNSYTVTSES 249
              S     + 
Sbjct: 244 NTGSAQPQIDI 254


>gi|260767763|ref|ZP_05876698.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP
           102972]
 gi|260617272|gb|EEX42456.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP
           102972]
          Length = 599

 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 6/205 (2%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                        +     +  V     +    +    ++  G  +       ++   + 
Sbjct: 400 GSATFHIDQAGDVKEFEAYVVPVKDSDGNPTGNMQVRVQDKSGKVLLTQPYAFEDNQEEL 459

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
             E    +   +S    L  G     KF  N+    G    +    +  +   + D    
Sbjct: 460 TLEIPKQDSDGKSTIFTLSRGAIADDKFTANLVPSDGDNGNLRKMINVQSNKTVDD---- 515

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                T++E   N         S +  L   +++         ++  GVNL EE + ++K
Sbjct: 516 --KKSTIIELYHNLNTDFGLKLSTASRLTDVARLEKESAESRIASVSGVNLDEEAANMMK 573

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            +Q+Y  S+++I   +    T+L  
Sbjct: 574 FQQAYMASSRIIQAANDTFNTILAL 598



 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 102/283 (36%), Gaps = 7/283 (2%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V   R        K L+  ++    +R  +    +   + +           
Sbjct: 8   ETYGMGVHVENVRRSWDQFAVKELNLATTDYSFKRDNEENLDMLSKLLSSVASKK-IPEN 66

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +++  DS+++ +   ++    K V++ A  + QN N     V++     +K +++ I  +
Sbjct: 67  LNEWFDSVKTLADTPNDVGARKVVLEKAGLISQNMNDFHETVRRQFDVTNKGLDVGIERI 126

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN-NDMVVYTS 222
            +   E+  +   +          +D +DQ + L+ ++S+   ++   R N     ++  
Sbjct: 127 NQLAVEIRDLQRLMMRTP---GPHNDLMDQHEKLVAELSQYTKVTVTPRKNAEGFNIHIG 183

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +G TL          + ++ Y    +     ++G  +       +  GKI AL+ +RD  
Sbjct: 184 NGHTLVSGTEASQL-KMIDGYPDVHQRRLAMVEGKALKPITARDI-GGKIGALMDMRDKH 241

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           +P   +++  +A       +       +     G  I   +  
Sbjct: 242 IPGLLDEIGRLATSFSYEVNRLQHQGLDLRGDIGADIFTDVNS 284


>gi|46204472|ref|ZP_00049951.2| COG1256: Flagellar hook-associated protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 181

 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 3/158 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---TMTTISPENVTVVTQRSENK 60
           L  F+ A         Q   + +NI N     YVRR      +      V   T      
Sbjct: 3   LDAFSTATAGLRVTQAQIGVVSQNIANVGTAGYVRRTLSPVTSGTGNAGVATGTIARALD 62

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               K L + +S      L        + +       ++     +    SL++ + N + 
Sbjct: 63  TAALKQLRSENSGAAYTALKSGIHTQLDALYGKPGDASALDGVFNAFTLSLQTLAANPTS 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                TV+  A ++     ++   VQ +R+   K+   
Sbjct: 123 TAARSTVLSAANDLATRIGSAGNGVQALRSGLQKQFSP 160


>gi|312111671|ref|YP_003989987.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1]
 gi|311216772|gb|ADP75376.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1]
          Length = 268

 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 2/174 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                  +      + +            +              L   G +         
Sbjct: 97  SGDGFFVLEDANGTNRLYTRAGNFYLDAGDGTNRYIVSADGRYLLGTSGRIRIPVTAQSV 156

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +     +   +      +A  + N  L +   N   +     S    +     
Sbjct: 157 SIGTDGTVSYVDANGQLQTAGKIRLAKFSNNEGLEKVGDNL--FRPTANSGDPQIGDVGD 214

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I         V+L EE + +I  ++ +  + ++I  +D++LQ L+   K
Sbjct: 215 NGTGTIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKK 268



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/181 (9%), Positives = 37/181 (20%), Gaps = 29/181 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53
           +L       +   N   +   I  NI N +   + +  T+            S       
Sbjct: 1   MLRSMYSGISAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60

Query: 54  TQR-----------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         + +              +        F  L++      +  N    
Sbjct: 61  GVNPKQVGLGMQLAAIDTVHTQGSTQPTGRPLDLAISGDGFFVLEDA-----NGTNRLYT 115

Query: 103 YISKLRDSL----ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                          Y  +     L  T       V     +   +      DA+ +++ 
Sbjct: 116 RAGNFYLDAGDGTNRYIVSADGRYLLGTSGRIRIPVTAQSVSIGTDGTVSYVDANGQLQT 175

Query: 159 E 159
            
Sbjct: 176 A 176


>gi|78067837|ref|YP_370606.1| flagellar hook protein FlgE [Burkholderia sp. 383]
 gi|77968582|gb|ABB09962.1| conserved hypothetical protein [Burkholderia sp. 383]
          Length = 413

 Score = 92.0 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/472 (8%), Positives = 93/472 (19%), Gaps = 67/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS---ENKNMFDKV 66
             +    AS     I  NI NA+   +            N    +  +      ++    
Sbjct: 6   GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSTNTQIGIGTSLNAVQ 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
            +     I                    +   +        +     +  +     L   
Sbjct: 66  QNFGQGTINTTSSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             +    +                +  + + L+        +  T ++      +     
Sbjct: 126 AANAGGVI----------------NTAQTVPLQAPTTNIAPTATTKISAQFNLNSQDTTP 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                   D      S  I +   +  +  + +Y              +           
Sbjct: 170 TKTPFSATDNTTYNYSTSIQVYDSLGGSQAVNMYFVKSAAGTWEAYAGVQGGSTTDLGTV 229

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           +  +   I      +        G+ +  +   D         L                
Sbjct: 230 TFDSSGAIKSTTTGTPATPTTSVGQFQFTVPNTDGSATPQSLTL---------------- 273

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                                          +    QY                      
Sbjct: 274 ------------------------------DLTGTTQYGGKDGVNNLAQDGYASGTLTTY 303

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     L  +Y +          +A  N    L+    N     E   S    +     
Sbjct: 304 TIGADGKLTGNYSNGQTAVLGEIALANFNNPNGLVNLGGNQYA--ESAASGVPQISAPGS 361

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                +  S      V+L  +L  LI  +++Y  + + I     + QT++  
Sbjct: 362 TNHGKLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQAVDQTIINL 413


>gi|296274022|ref|YP_003656653.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098196|gb|ADG94146.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299]
          Length = 487

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/499 (9%), Positives = 100/499 (20%), Gaps = 36/499 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQR 56
           +      + +    AS        NI N +   +                 + V   T  
Sbjct: 1   MNGSLYNSLSGIYAASNYVDVASNNIANINTIAHKEDRISFADQMYQNGIGKGVGAGTV- 59

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             NK+     +   ++        + F  L +        N +          S +    
Sbjct: 60  --NKSFRQGDVKDTNNQYDFAIQGKGFFILTD-----PETNLTYYTRAGNFTKSNDGTLV 112

Query: 117 NLSEDILGKTVIDNAEEVV---------QNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           N     +                           A  +                  +   
Sbjct: 113 NAQGLDVMGLQTKVISTTSSDGTIIFGDNYTQHLATSIITQEDRTISINAKATDYTKSAT 172

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                 N+     +          D  + L    S    +S         +VY      L
Sbjct: 173 DVGVSGNNYKSSDSVISDIELLKTDYNNKLKLLESNPNEVSVPSTLQKTNIVYEDYKADL 232

Query: 228 FETVPR------DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
                       + + E+       +           +     S         +  +   
Sbjct: 233 KNANDALEINIGNFSIEQNYDTDPLTTMKKFADKISDIQGYTASFDEATNTLTIDNLVAG 292

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                   +      +I                    +   ++  + +     +     N
Sbjct: 293 RTSKVSIPIITSTTGVISDTPAVKGSGLAMVESSRDALNKAVQLANAQFLDVQNGIPAPN 352

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTL 400
                  S       +      +  + +   D I       N         A      +L
Sbjct: 353 QPTLELESINLQPTKIGLASYNDDTDFSVTSDGILLLTQGSNTYIAGRISTAYFPDEQSL 412

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N         S             N +         +N+   L+ LI  ++++  
Sbjct: 413 NPEGDNLYTQ--TKESGEAKNADT----LNTVVSHSVEASNINVATALTKLIIAQRAFEA 466

Query: 461 SNKLIMFTDKMLQTLLEGV 479
           S+K I  +D  L T ++  
Sbjct: 467 SSKAITTSDSFLDTAIKLK 485


>gi|94987008|ref|YP_594941.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00]
 gi|94731257|emb|CAJ54620.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00]
          Length = 690

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 93/388 (23%), Gaps = 7/388 (1%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN--TSAREVQKIRADA 152
             +    +  +   +     + + +   L        +               +      
Sbjct: 308 DSSGKLANQSAYSLNGSRKPAVDPATGALINGNGFTIDRDGNAIPILNIDNPAENFYPAE 367

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
                  +               ++   T    +    L   D+     +    +S++  
Sbjct: 368 VSNNGFPMIVANFTGVPGKNTAGSVGDATTFFTEIDFGLKATDLDNTWKNANEPLSSLSY 427

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                 +  + G T+        +  ++         NP  +       N        + 
Sbjct: 428 KKTHNPMDVAGGWTVGGYKTPAPSVTELG--MAQILENPAGVMPQYYFGNPNYDNTVPQS 485

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              +   ++            A        ++      +  +        +KDL N    
Sbjct: 486 PPYVYKNEASYQAAYKTALTAAGGTAADIKKEHWPHNAASGILEANDPPNVKDLANMNGT 545

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               +         + +            L N  ++     L   Y +          + 
Sbjct: 546 PNRLSNAFTNYAGGSSTKSASQNGYGFGDLMN-YSVNAEGVLFGVYSNGVQLPLYQVALY 604

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
             N+   L     N         S        +   F  I+ +      V++  E   +I
Sbjct: 605 DFNSKQGLRREGGNLFSQ--TRESGDPSSGAANTSGFGSINANTLEGSNVDISTEFVSMI 662

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  ++K++   D+ML+T++   +
Sbjct: 663 ATQRGFQSNSKIVTTIDQMLETVVNMKR 690



 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/414 (8%), Positives = 82/414 (19%), Gaps = 30/414 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           MSL A      +   +  ++   I  NI N +   +  +                   + 
Sbjct: 1   MSLTAGMWTGVSGLLSHGEKMNVIGNNIANVNTVGFKGQRMDFADFIYQDGFSTAGITQI 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   +   N         + A       + F  +K           S        R 
Sbjct: 61  GRGVGIGAVMGNFGQGSFETTTEATDLAIGGRGFFKVK-----PQGSETSYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           + + Y  +     L    IDN E    +    N      Q +      +I L+   +   
Sbjct: 116 NNDGYLVDPHGYALQGWKIDNTEGPQRISGGVNPGTNTSQIMGTGEPTDIRLDTWTVAPL 175

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            +     N  +     S   + +       L    +             +          
Sbjct: 176 QTTNVSFNVNLS-SDKSGDKSQNVNSPFTSLFNIWNGKQPSEPNNPPMPESAYSYQTSIK 234

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +++                        +                 +  +    D+     
Sbjct: 235 VYDEAGGTHTLTVYFD----------QVSPKDYKGGGSGESVWEYVVTMDPSEDNRQVSV 284

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              + ++             ++ +S        A  +           +  +     +  
Sbjct: 285 GGNIVDIKDTKAAGMLMSGTLSFDSSGKLANQSAYSLNGSRKPAVDPATGALINGNGFTI 344

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +                N        +       +F      +    +    T 
Sbjct: 345 DRDGNAIPILNIDNPAENFYPAEVSNNGFPMIVANFTGVPGKNTAGSVGDATTF 398


>gi|172057880|ref|YP_001814340.1| hypothetical protein Exig_1871 [Exiguobacterium sibiricum 255-15]
 gi|171990401|gb|ACB61323.1| protein of unknown function DUF1078 domain protein [Exiguobacterium
           sibiricum 255-15]
          Length = 278

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 63/235 (26%), Gaps = 4/235 (1%)

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
             +     G        +    G   ++  +                 V I         
Sbjct: 46  SQSVGSASGNGGGVGGANPKQVGLGASMATVDSVSNQGALQNTGRTLDVAISGEGFFQIQ 105

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +              D +     G       N      P+    GG  +     N +N
Sbjct: 106 TADGIRYARSGNFYTDLDGNLVTGDGNYVIGSDNAGPLGQPTIPLGGGYKTINIPANAQN 165

Query: 368 LAGYPDLINHYCD--SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           L+   D +  Y D     +   +  +A       L +   N         S        S
Sbjct: 166 LSIGKDGLVTYVDPAGTLQQAGYISLANFPNPGGLEKSGSNMYSI--SQNSGQPTSATPS 223

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 ++        V+L EE + +I  ++ +  + ++I  +D++L+ L+   +
Sbjct: 224 TNGLGQLTSGTLEMSNVDLSEEFTEMIIAQRGFQANTRIITTSDQILEELVNLKR 278



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 58/249 (23%), Gaps = 15/249 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +L       +   N   +   +  NI N +   Y +                  +     
Sbjct: 1   MLRSMYSGISGLKNFQTKLDVVGNNIANVNTFGYKKGRVTFKDLVSQSVGSASGNGGGVG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                      +M      ++  A+             E        +            
Sbjct: 61  GANPKQVGLGASMATVDSVSNQGALQNTGRTLDVAISGEGFFQIQTADGIRYARSGNFYT 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L+        + +  +  DNA  + Q         + I   A+ +      +      +
Sbjct: 121 DLDGNLVTGDGNYVIGS--DNAGPLGQPTIPLGGGYKTINIPANAQNLSIGKDGLVTYVD 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                    + + +       L++    +  IS+  G  T    + + +   + GT    
Sbjct: 179 PAGTLQQAGYISLANFPNPGGLEKSGSNMYSISQNSGQPTSATPSTNGLGQLTSGTLEMS 238

Query: 230 TVPRDINFE 238
            V     F 
Sbjct: 239 NVDLSEEFT 247


>gi|332669198|ref|YP_004452206.1| flagellar hook-basal body protein [Cellulomonas fimi ATCC 484]
 gi|332338236|gb|AEE44819.1| flagellar hook-basal body protein [Cellulomonas fimi ATCC 484]
          Length = 392

 Score = 91.6 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/381 (8%), Positives = 95/381 (24%), Gaps = 12/381 (3%)

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           S ++       +I             Q  +T ++ +Q      D       + +   +  
Sbjct: 14  SHQTMLDVTGNNIANVNTTGFKSSQTQFQDTLSQMLQNGGGAQDGVGGTNPAQVGLGVRV 73

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQ----KISEIIGISTIVRNNNDMVVYTSDGT 225
             +  +  +  +     + D + Q D          S      +   ++   +V   +G 
Sbjct: 74  AGITTNFTQGASQMTGRSTDMMIQGDGFFVVRKGAESYYTRAGSFDFDSTGQMVLPGEGA 133

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALLQIRDSVVP 284
            +      +   +     +         +  V  S+               +  R   V 
Sbjct: 134 LVQGWAAVNGVVDTNGPLSDLRVPAGTLMPAVATSTASYEGNLDAAAANGTILNRTIDVY 193

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE-----TIC 339
                + E+      + +     A +              D        ++       I 
Sbjct: 194 DATGNVRELQLTFTKAAAGWSVAATDGTATVVAAPMTFAADGSLTTPTTLTVGGVAVDIS 253

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               +    S      +           L     +   + +   +      +        
Sbjct: 254 DLTGFAGIDSVKARTQNGQAAGTLQSFALGADGTITGAFSNGLKQTIGRLAIGSFTNPSG 313

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +   +         S    +          ++        V+L  E + LI  ++ + 
Sbjct: 314 LEKAGGSLFRT--SVNSGDPQVGPAGTGGRGTLAGGALEMSNVDLSSEFTSLIIAQRGFQ 371

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++++I  +D++LQ L+   +
Sbjct: 372 ANSRVITTSDEVLQELVNLKR 392



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/342 (7%), Positives = 66/342 (19%), Gaps = 19/342 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   +          NI N +   +    T    +   +      +++   
Sbjct: 1   MLRSLFSGISGLRSHQTMLDVTGNNIANVNTTGFKSSQTQFQDTLSQMLQNGGGAQDGVG 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                             +    A              +          S          
Sbjct: 61  GTNPAQVGLGVRVAGITTNFTQGASQMTGRSTDMMIQGDGFFVVRKGAESYYTRAGSFDF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                     E  L +         V     +   +  +R  A   +    ++   +   
Sbjct: 121 DSTGQMVLPGEGALVQGW-----AAVNGVVDTNGPLSDLRVPAGTLMPAVATSTASYEGN 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L            +        + R++ L       G S    +    VV          
Sbjct: 176 LDAAAANGTILNRTIDVYDATGNVRELQLTFTKAAAGWSVAATDGTATVVAAPMTFAADG 235

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           ++               S+    F     V +   +    G +++     D  +    + 
Sbjct: 236 SLTTPTTLTVGGVAVDISDLTG-FAGIDSVKARTQNGQAAGTLQSFALGADGTITGAFSN 294

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
             +     +   S  +P             +    D      
Sbjct: 295 GLKQTIGRLAIGSFTNPSGLEKAGGSLFRTSVNSGDPQVGPA 336


>gi|163789641|ref|ZP_02184079.1| flagellar hook protein [Carnobacterium sp. AT7]
 gi|159875173|gb|EDP69239.1| flagellar hook protein [Carnobacterium sp. AT7]
          Length = 289

 Score = 91.2 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/275 (8%), Positives = 75/275 (27%), Gaps = 6/275 (2%)

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
              +     +   + T       R  +     + +  +  N   +   V   +  + +  
Sbjct: 17  TKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQTGINAQQVGLGVQVGSIDTVMSG 76

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G +++  +  D  +    +    +       ++       +            ++     
Sbjct: 77  GSLQSTGRALDFGIENGDSSFFTVKEGDNTFYTRDGGFYTDPNGNLVTSGGLKVQGFVAN 136

Query: 330 LCQGISETICVNPQYRSNPSFL----RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                      +              +  G  + K      ++     ++  Y    +  
Sbjct: 137 PPAVNDTNFNPDTFVDGKTMSAITIPQSIGEGADKADLQSYSVDSKGFIVGSYSGGKSMV 196

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +   +    L +   N     E   S + +     +  +  +   +     V+L 
Sbjct: 197 LGRVGLTSFSNPDGLQKSGGNLYT--ETANSGAPEAGSPGEPGYGSVRSGFLEMSNVDLA 254

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E + +I   +SY  +++ I  +D ML+ L+   +
Sbjct: 255 NEFTEMIVTSRSYQANSRSITTSDTMLEELINLKR 289



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 25/137 (18%), Gaps = 9/137 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           +L           N   +   I  NI N +   +                  Q   N   
Sbjct: 1   MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQTGINAQQ 60

Query: 62  --------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                     D V+   S     + L    E            +N+              
Sbjct: 61  VGLGVQVGSIDTVMSGGSLQSTGRALDFGIENGDSSFFTVKEGDNTFYTRDGGFYTDPNG 120

Query: 114 YSKNLSEDILGKTVIDN 130
                    +   V + 
Sbjct: 121 NLVTSGGLKVQGFVANP 137


>gi|295399817|ref|ZP_06809798.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978220|gb|EFG53817.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 334

 Score = 91.2 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/267 (9%), Positives = 61/267 (22%), Gaps = 11/267 (4%)

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
                           +     +    +      V  S++  +       +A     D  
Sbjct: 70  GSQLAAIDTIHTTGSTQPTGRVLDLAISGDGFFQVAESADNTNFTNVRYTRAGNFYLDKD 129

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
             +  +    +      +    DP        P   +               S       
Sbjct: 130 GYLVTSDGYYVVGFAAYATGTYDPDGAAGATPPVNNVTLSPLPSAIDPKFDFSSNPPKYT 189

Query: 343 QYRSNPSFLRDGGSVSKK---------FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                 +        +                 ++     +         +      +A 
Sbjct: 190 GVAPTINNFTVNTGETTNVQYKPIKIPTDAQSVSIGQDGSITYVDRFGTLRWAGQLVLAK 249

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              N  L +   N         S +  L+         I         V+L EE + +I 
Sbjct: 250 FPNNGGLEKAGANLYRD--TPNSGTPILNFAGAAGIGAIQSGALEMSNVDLAEEFTEMIV 307

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +  + ++I  +D++LQ L+   K
Sbjct: 308 AQRGFQANTRIITTSDEILQELVNLKK 334



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/293 (8%), Positives = 69/293 (23%), Gaps = 30/293 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +L       N   N   +   I  NI N +   + +  T+                    
Sbjct: 1   MLRSMYSGINAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFQDLISQTISGASAPSQGRG 60

Query: 45  -ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
             +P  V + +Q +    +            +        F  + E  + + ++ N    
Sbjct: 61  GTNPRQVGLGSQLAAIDTIHTTGSTQPTGRVLDLAISGDGFFQVAES-ADNTNFTNVRYT 119

Query: 103 YISKLRDSLESYSKNLSED------ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                    + Y                    D           +   +  + +  D + 
Sbjct: 120 RAGNFYLDKDGYLVTSDGYYVVGFAAYATGTYDPDGAAGATPPVNNVTLSPLPSAIDPKF 179

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           +   +  +      T+ N  +     +           D     I +   I+ +   +  
Sbjct: 180 DFSSNPPKYTGVAPTINNFTVNTGETTNVQYKPIKIPTDAQSVSIGQDGSITYV---DRF 236

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
             +  +    L +        +   +    + ++   I     ++  G+    
Sbjct: 237 GTLRWAGQLVLAKFPNNGGLEKAGANLYRDTPNSGTPILNFAGAAGIGAIQSG 289


>gi|291280096|ref|YP_003496931.1| flagellar hook protein FlgE [Deferribacter desulfuricans SSM1]
 gi|290754798|dbj|BAI81175.1| flagellar hook protein FlgE [Deferribacter desulfuricans SSM1]
          Length = 817

 Score = 91.2 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/443 (8%), Positives = 105/443 (23%), Gaps = 5/443 (1%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +  +         V    +            +++  G          + E         +
Sbjct: 379 QSAINDNVSTGFVVDYNNTSTGKFTYDNTSGNNNITGFSIDKAYSGTVFESNMVTSDTIS 438

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
              +  S +   L S + +L+       V    +        +         +    I +
Sbjct: 439 VGNYTESNIFLRLASETDSLNNLYTNSGVSLGLDNNTTIQFDAQIGGDTPNGNGVNNISV 498

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
             + +   L  L             ++       ++ +      + I  S    N     
Sbjct: 499 ANNTVGDLLDALEAYMALPTDSIQIENGKIKVTGEKGIPNSI--DYINFSATGPNTYATF 556

Query: 219 VYTSDGTTLFETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                  TL        +  + +              +    ++N+     +        
Sbjct: 557 TDYMKYQTLQNASGGQLVTSQTIYDAQGNPHVVNYKFELYDEANNEWKLTIEPADSNDSI 616

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
             D                  G +        ++ +                +  G    
Sbjct: 617 SVDGTTGNTVIVRFNQDGSFQGVYDIFTNNVLSNLSYTLSPSNGASIMSGINVNLGTPGN 676

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                   S+ +      +          ++    +++  Y +   K      +A     
Sbjct: 677 YDGMTLSASDSTITETDQNGYPMGSLERISVNDTGEIVGAYTNGEIKKIAQVGIAIFTNQ 736

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             LL+         E   S    +   +      I+ S      V+L  E   +I  ++ 
Sbjct: 737 EGLLKVGDTLFA--ETPNSGQAAVGQATTGGRGSIAASALENSNVDLAREFVNMITTQRG 794

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  ++++I  +D++LQ L+   +
Sbjct: 795 FQANSRVITTSDELLQELMNLKR 817



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/423 (6%), Positives = 89/423 (21%), Gaps = 29/423 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L          N   +    I  NI N +   Y     +                    
Sbjct: 1   MLRSLYAGITGLNEHQKSMDVIGNNIANVNTVGYKTSRIVFQDLLFQTISGGKAPAGNLG 60

Query: 48  -----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                +  T  +  S +       L               F  ++      ++ N +   
Sbjct: 61  GINPKQIGTGTSTASVDTIFTQGTLQNTGVTTDMAIQGNGFFVVRS-----ENENENYYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                    + Y       I+   + D     +      +    ++ +          + 
Sbjct: 116 RAGNFTFDKDGYLVTPDGFIVQGWMADADTGEILTNTEVSDI--QLSSAYTSVPAKATTE 173

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +    +  T     I         A    +  D+      ++  +              +
Sbjct: 174 VSLVGNLDTRAEPTILEFQPLMTTATSNDNIFDLYSSNGLKLDLVDGEPVRIKAHATDIT 233

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPI--FIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           D   ++     ++  +   +  +    N           +    +      ++  L    
Sbjct: 234 DMAAVYNDNDVNLGLDSNPTLNLIVNGNSYALTYSSSTNADTANNDNQFHSVQGFLSELK 293

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           +++         ++        ++        +  G      +          ++ +   
Sbjct: 294 NILDTESGGNYTVSISNGEINVQRVSGDLVINSFSGNPNLAALLQPLVGTYNSVNTSSTS 353

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           N  +        +  S        +++            D  N +         + N  +
Sbjct: 354 NSLFYEKVLTAGNDFSNLGDLAVQIQSAINDNVSTGFVVDYNNTSTGKFTYDNTSGNNNI 413

Query: 401 LEY 403
             +
Sbjct: 414 TGF 416


>gi|90021855|ref|YP_527682.1| ribonuclease III [Saccharophagus degradans 2-40]
 gi|89951455|gb|ABD81470.1| flagellar basal body FlaE [Saccharophagus degradans 2-40]
          Length = 804

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/443 (9%), Positives = 103/443 (23%), Gaps = 19/443 (4%)

Query: 38  RRDTMTT--ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
           R +   +   +     VV+       + D               L    A          
Sbjct: 378 RSEATLSGFTNASGNIVVSVNDIALVVDDLADLEAEINALSTSSLAGITATVNAAGTAIT 437

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
             ++    +          +  +    L       A                +  +    
Sbjct: 438 VTSAVGKDLKFAVSGGAGDAITVQGSTLSAAQTITAGGNGDTDAIVVGGAIDMVLEEGYS 497

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +E  +  L     +    N+       +              +     +     + +   
Sbjct: 498 LENAVPQLTGI-FQPFTANEFTPIVINAFDPTDQSTYNSATSMTIYDSLGNSHVMTQYFV 556

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                 +D T++          +  +     +   P       ++S        G +  L
Sbjct: 557 KQDYDATDPTSVPNHWVMYARIDDADVGDPDTTLPPPANTQPTLASYDVYFNEDGSLNTL 616

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                         L     +   +  + D     +     +        ++        
Sbjct: 617 --------------LTSDMLISNWTPVDADGNPNGALGPQNILAGGTQTVVEPPTSSNFV 662

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            ++    Q+ S  S      +       +  N+A    +   + +  +       +A  +
Sbjct: 663 ISLEGTTQFGSEFSVNDISQNGFSTGRLSGLNIADNGTIFARFTNGQSLRLGQVVLADFS 722

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L         W E   S S ++          +         V+L E+L  LI  +
Sbjct: 723 NQQGLQPTGNTM--WAETFESGSPNVGTPGSAALGAVQAGALEESNVDLSEQLVNLIIAQ 780

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           +++  S K I   D + QT++  
Sbjct: 781 RNFQASAKTIETADAVTQTIINL 803



 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/408 (10%), Positives = 100/408 (24%), Gaps = 10/408 (2%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDK 65
           F+ A +    AS   +    NI NA    +             +V      +    +  +
Sbjct: 3   FDTALSGIRAASSDLSVTGNNIANASTTGFKASRAEFGDVYATSVLGAGVNAIGSGVQVQ 62

Query: 66  VL--HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
            +        +G                       +            E Y  N +  +L
Sbjct: 63  EVAQRFSQGNVGFTENELDLAINGNGFFVVSQQGETLYTRAGSFGLDDEGYVVNNTGAVL 122

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                D A  +         +++   ++        + +L    S   V+       + +
Sbjct: 123 QGFSADGAGNIGG----IQGDIRIQTSNLAPRQTTGVESLLNLDSTEPVLQTIGAEFSTA 178

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                     R    +    +  I+  ++N +   +                    ++S 
Sbjct: 179 GTAVGVTQIGRQTAEKSTLLMDAITFPIQNLDTNPIIFDITLAGPTVGNNGTVTINLDSI 238

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
             ++  + +     +VSS              + +  SV          +   +      
Sbjct: 239 DFSTSIDDLTELQQIVSSINSQLYSPNGGADPIDVVASVGTDGLGNPAILFESIYEGELT 298

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
              I+ +  + PG   A G+ D +       S +     Q       +   G++    + 
Sbjct: 299 DISISIDPASDPGNVAALGLDDTNVGTTGIPSVSNGYPLQT---VDIVGPDGNIVPFSIP 355

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                A     +N              ++G       +  + N I  +
Sbjct: 356 AGAEAASTASRLNELPGISATARSEATLSGFTNASGNIVVSVNDIALV 403


>gi|15895423|ref|NP_348772.1| flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824]
 gi|15025147|gb|AAK80112.1|AE007716_1 Flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824]
 gi|325509569|gb|ADZ21205.1| Flagellar hook protein FlgE [Clostridium acetobutylicum EA 2018]
          Length = 423

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/478 (9%), Positives = 109/478 (22%), Gaps = 55/478 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   +  NI N+    Y  +    + +                
Sbjct: 1   MLRAMTSGISGLKVNQNKLDIVGSNIANSSTTAYKSQSINFSDA---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                                    +  S               L  +  +   N +   
Sbjct: 45  --------------------ISETIKGASGATANYGGVNPEQITLGVNSSAIITNTASGS 84

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +  T  +    +               AD  + I +  ++     S  +  + +     +
Sbjct: 85  VNTTGRNLDVAITDGDGYFMVASGANMADESECINVSTTDH-SITSTPSGTDISYTRDGS 143

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              D    L   D        ++G +T+  ++ D                 +      + 
Sbjct: 144 FNLDNEGNLVTADGRKVLGYSMVGRNTLYEDSADKTKNIYGNFVSISGAQDETTMAGSDE 203

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T  +     D            P G   A ++  D       +         + +  
Sbjct: 204 NAATYIAAEGGDDLNKSIVAAVDKNPSGSGTATIKKGDVAFVDANDVDLRADNRYLHTLK 263

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
              P              + +        +G S           +       G ++    
Sbjct: 264 I--PPTVTKVTATRDASGNAVYSTQELKVKGFSIGQDGVITANLDNGSAAAIGQIAMSSF 321

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N   L            S  +  +         + T +  A+                 
Sbjct: 322 TNAGGLEKEGGNYVKPSASSGQPMVRSGAYSNKLDPTFISSAKK---------------- 365

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +   +  +         V+L ++ S +I   ++Y  + K+I  +D++LQ L+   +
Sbjct: 366 EDNSGGYGKMYSGALEMSNVDLAQQFSDMIVASRAYQANGKIITTSDEILQDLVNLKR 423


>gi|219681705|ref|YP_002468091.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471401|ref|ZP_05635400.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624548|gb|ACL30703.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 543

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 114/334 (34%), Gaps = 18/334 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54
           +  + N A +  N       + +  I   N        +  +   + +N      V V  
Sbjct: 1   MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57

Query: 55  QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +   +     ++    +Q  ++    L++++      +N  +  ++     +E 
Sbjct: 58  IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                 +++  + +      +V       ++++ +  D    +   +  +   + E+  +
Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174

Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              I+     K        ++QRD L+ +++ +IGI  I  ++N   +  ++G ++ +  
Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIDNN 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            +       ++      S         V+      +P   + ALL+ R   +   +N++ 
Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           ++      S +    I  +     G  I +  + 
Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQP 327


>gi|78043762|ref|YP_359848.1| flagellar basal-body rod protein FlgG [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995877|gb|ABB14776.1| flagellar basal-body rod protein FlgG [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 261

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 74/279 (26%), Gaps = 21/279 (7%)

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           S   GIS +  +   M V  ++ + +     +       +     +  + ++   V +  
Sbjct: 4   SLYSGISGLKSHQYKMDVVANNISNVNTIGYKSSRVNFEDLIYQKTNQSGVYPSYVGLGV 63

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N            L      +    Q     + +  + + +          +  G  I  
Sbjct: 64  NVSGVDTIFTQGGLKSTGRPLDVAIQGNGFFVLKDPVTTRTYYSREGVFYLDKDGYLING 123

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
               + +     I                      ++         +     +     D 
Sbjct: 124 HGYRVQDVNGADIQ---------------------INNPEAVVTLTIQNDGQIKLVRSDG 162

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      +       TL    +N        ++         Q     +   Y     
Sbjct: 163 TTEFAGPIGLMSFKNPETLERIGQNVYSATIDTQTSFSSPVTPGQQGQGILVSGYLEMSN 222

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V+L  E + +I  ++ Y  + ++I  +D+ML+ LL   +
Sbjct: 223 VDLASEFTEMIVTQRGYQANARVITTSDQMLEELLNIKR 261



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 28/179 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           ++       +   +   +   +  NI N +   Y                          
Sbjct: 1   MIRSLYSGISGLKSHQYKMDVVANNISNVNTIGYKSSRVNFEDLIYQKTNQSGVYPSYVG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             V V      +       L +    +        F  LK+          +        
Sbjct: 61  LGVNVSGV---DTIFTQGGLKSTGRPLDVAIQGNGFFVLKD-----PVTTRTYYSREGVF 112

Query: 108 RDSLESYSKNLSEDILGKT-----VIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + Y  N     +         I+N E VV     +  +++ +R+D   E    I 
Sbjct: 113 YLDKDGYLINGHGYRVQDVNGADIQINNPEAVVTLTIQNDGQIKLVRSDGTTEFAGPIG 171


>gi|15616952|ref|NP_240165.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386813|sp|P57428|FLGK_BUCAI RecName: Full=Flagellar hook-associated protein 1; Short=HAP1
 gi|25403603|pir||C84970 flagellar hook-associated protein 1 [imported] - Buchnera sp.
           (strain APS)
 gi|10039017|dbj|BAB13051.1| flagellar hook-associated protein 1 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 543

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 114/334 (34%), Gaps = 18/334 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIE--NADNKNYVRRDTMTTISPEN------VTVVT 54
           +  + N A +  N       + +  I   N        +  +   + +N      V V  
Sbjct: 1   MSDILNSAISGMNAMKIMIDNTIDKINHPNNKTLG---KRVVIENTVQNENKNSTVKVKE 57

Query: 55  QRSENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +   +     ++    +Q  ++    L++++      +N  +  ++     +E 
Sbjct: 58  IYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLC---EKSNIFSQLLNDYYAQIEE 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                 +++  + +      +V       ++++ +  D    +   +  +   + E+  +
Sbjct: 115 DIVLAKKNVFNENIQKKLSNIVFAIKDFDKKLKFLEKDIKDSVINNLKKVNSLIDEIHDL 174

Query: 174 NDAIKFKTASKHDAH--DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              I+     K        ++QRD L+ +++ +IGI  I  ++N   +  ++G ++ +  
Sbjct: 175 TIDIRCFPVLKFPNRVDGLIEQRDRLVDELNGLIGIKVIKDHDNYK-LNLNNGISIIDNN 233

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
            +       ++      S         V+      +P   + ALL+ R   +   +N++ 
Sbjct: 234 KKQNLIALTSTSDERYISVGYVDTNDKVAKKIEDMIPTATLGALLKFRREELTNTRNKIG 293

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           ++      S +    I  +     G  I +  + 
Sbjct: 294 QLIINFADSINSYHAIGYDMFGHLGRQIFNISQP 327


>gi|302343734|ref|YP_003808263.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075]
 gi|301640347|gb|ADK85669.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075]
          Length = 786

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/393 (10%), Positives = 99/393 (25%), Gaps = 21/393 (5%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
            +   D    +   + I+    +  +   + +      T+         +   +A     
Sbjct: 415 SVTGDDTTTLSELANMINAGNTATGTLQIDTTGMADDATITVGGVTFSYDGGGTATGANP 474

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
               AD    +  +      +       ++ +  +     +      D+     S  +  
Sbjct: 475 WATLADLATAITANVPNVTATYTAGGTISLAY-DSVGVAGNAVTLAMDLNGGGGSIDLSG 533

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           ST+    +      +   T       D  +    +  V    +   ID            
Sbjct: 534 STLTNGWDGTTTGGAHEVTASALENADGTYSLQLTRNVAGAGSTYTIDVD---------- 583

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                     +  + +          A     +  E + +   +  V   +  +      
Sbjct: 584 --------EFLSTNTLGSEAGVGFTTATQTTVARDETNGVLDLNGQVELDYYFEDAVQPQ 635

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                        + Q   +          S +      ++     +   + +   K   
Sbjct: 636 TITIDYSPTASAASTQSAGSNETFYLYQDGSTRGTLQSLDIGTDGVITGTFSNGQLKTLG 695

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   W +  +S     +   Q     I         V+L  E
Sbjct: 696 QVMLVDFANPEGLAREGDNL--WSQTTKSGEPIENTPGQGGTGSIESGALEQSNVDLATE 753

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +I  +++Y  ++K I  TD+MLQ L+   +
Sbjct: 754 MVKMILYQRAYQANSKSISTTDQMLQELINLKR 786



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/447 (7%), Positives = 93/447 (20%), Gaps = 19/447 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQ 55
           M +L          N   Q  +++  N+ N +   Y                   TVV Q
Sbjct: 1   MGMLTAMWAGVAGLNVHGQALSAVADNVANVNTHGYKASRVNFGDVMIHSLTVGGTVVNQ 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS----PTHYISKLRDSL 111
                 +          +     +              ++ +            +     
Sbjct: 61  VGTGAKVLSVQNLLTQGSFETTDVPTDMAINGGGFFQVNNTSAGQTAKYYTRAGQFLLDT 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E Y  N     L    +D   +++           +I       I     ++   L+   
Sbjct: 121 EGYMVNPQGYRLQGYNVDANGDILAVPADL-----RITTVQTDAIATSAIDISMNLNSED 175

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
                          +             +     +S   +         ++G T F  V
Sbjct: 176 TKKLHPSQLIDPSDQSTWNYVNTTRTYDSLGVGHNLSMFYQRLTTYNGTKANGATSFWKV 235

Query: 232 PRDINFE-KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               + +   +       +   ++D V   +        G +  +          +    
Sbjct: 236 TAFESVDGVYHPNEDDYATTAEYLDAVNAKTYYMQFDTSGHLVGVSTGDSGYGDTYVYGG 295

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
              +     + +    +  +        I               S ++ V        + 
Sbjct: 296 KVSSSTSDIATALGGQLTFDGAGASDQVIRTSGTVTFAGTGTTSSTSVTVGADAAYTLTD 355

Query: 351 LRDGGSVSK----KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                  +     +       +  Y         + +      P     ++ +  E   +
Sbjct: 356 GLTPAQAAAELCDQINGASPAVNYYAVNEGSGVVTIHAKNANGPFDLSVSHDSSTEPDFS 415

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHIS 433
             G      S+  ++          + 
Sbjct: 416 VTGDDTTTLSELANMINAGNTATGTLQ 442


>gi|291286229|ref|YP_003503045.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883389|gb|ADD67089.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 829

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 103/396 (26%), Gaps = 2/396 (0%)

Query: 85  ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
           A+ E +        S T   +   D   +     S D LG       +        +   
Sbjct: 436 AVIEAVYGTTDTELSNTFLRTAQDDDPLTELFTSSGDSLGLDATAILQFSAGVAGENLAG 495

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
              I A      +L  +       +    +D ++   +   ++       +       + 
Sbjct: 496 TATIPAATSTLDDLREAIAAYMGYDSATEDDVLQHIASLDKNSGKLQITGEKGSPNEIDF 555

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
           +    +     D      +  T+ E     +   +       +     +   +  S +  
Sbjct: 556 VKFEVVGSGTYDTFYDYYEYNTVQEAKGGTLTTSQTIYDAQGNAHTVQYNFEMSDSLDNV 615

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
             +         +I  +     Q  +   A       + +      S ++          
Sbjct: 616 WKLTVSTPDDGAEISFNETTGNQVYMHFNANGSFNYLTTESGQRIASLSMNYDTGGGAGV 675

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             D ++  G +           +    +         L          ++I +Y +    
Sbjct: 676 VSDIEMDLGTAGKFDGIYISSDDSGITKAAQDGYATGLLESTLFNSNGEIIGYYTNGQVA 735

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                  A       L +       + + + S    +          ++        V+L
Sbjct: 736 TIAQIATATFTNPGGLTKVGD--TTFQKSSNSGDPAIGRPGTGFRGKVAAETLENSNVDL 793

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             E   +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 794 STEFVNMITTQRGFQANSRVITTSDEMLQELMSLKR 829



 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/416 (7%), Positives = 94/416 (22%), Gaps = 15/416 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +  +   Q    +  NI N +   Y     +         V +    +   
Sbjct: 1   MMRSLYSAISGLSVNQQAMDVLGNNISNVNTVGYKSGRAVFEDMLSQTLVGSTAPSDTLG 60

Query: 63  FDKVLHA-------------HSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKL 107
                                + ++    +        +         +S          
Sbjct: 61  GTNSTQVGLGTSLAGVDTIFETGSMQSTSVNTDLAIQGDGFFVIKGAGSSDLLYTRAGDF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           R          S   +   ++D     +    T+   V        +      ++L   L
Sbjct: 121 RFDTSGSLVTSSGFYVQGWMVDPDTGELLTEGTTEDIVLSSAYQTAQAKVTSEASLAGVL 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                 +           D  D + Q         ++    +I    +   +        
Sbjct: 181 DTDADPSIVSYPSLLHYADTGDSIFQVYSDDGANMDLADNESIKVKAHGTGMTEMGYIYN 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              V  D+  +      + S    +       +  + +   + ++       D  V +  
Sbjct: 241 TSDVNLDLASDPQLLVYINSNPVTLEYGVDFNTMAELANALETQLNTAAGAADFSVAVVD 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             ++     ++G+    D  +G+      +     + D                     +
Sbjct: 301 GTINVTRNTVVGANVSIDSFSGSPLLAVAMSDLASVYDDAGDTKSSDEMYYESQIYAGRD 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            + L +  S  ++ +          ++            I + +      + L  +
Sbjct: 361 FTTLTELASAIEEAIDGNVIPTDEFNVTYDSATGQFNYVIDNTLNSALGTLRLSGF 416


>gi|117928057|ref|YP_872608.1| hypothetical protein Acel_0849 [Acidothermus cellulolyticus 11B]
 gi|117648520|gb|ABK52622.1| protein of unknown function DUF1078 domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 398

 Score = 90.9 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 72/245 (29%), Gaps = 5/245 (2%)

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                ++ T  + +  +  DG     +    V   K +A     +       N       
Sbjct: 159 TSMPPSATTTATLAGNLPADGSGSPIDNNLTVYDAKGQATQYTLEYSYDTTSNSWKLDIL 218

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G      P++ +S              L  +    IS  +     Y    +      
Sbjct: 219 PPGGGSPTNVPLSFDSTTGQYNGTNPQTVTLGGQN---ISLDLSGLTAYGGGNTVEVVSS 275

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             S         ++    +   + +   +      +A  N    L +   +   + E   
Sbjct: 276 DGSAMGSLASYTISPDGTIQGVFTNGMKQPLAKIALATFNNPGGLTKVGTS--EYAESVN 333

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +          ++        V+L +E + LI  E+ +  + K+I  +D++LQ L
Sbjct: 334 SGAAQIGASGTGSRGQLAAGELEGSNVDLSQEFTNLIIAERGFQANAKVITTSDQVLQDL 393

Query: 476 LEGVK 480
           +   +
Sbjct: 394 VNLKQ 398



 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/369 (7%), Positives = 68/369 (18%), Gaps = 15/369 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +L       +           +  NI N +   +         +          P+ V  
Sbjct: 1   MLRSLFSGVSGLRAHQTMLDVVGNNIANVNTVGFKASQVEFEDTLSQMLRAAGAPQGVQG 60

Query: 53  VT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T   Q      +                +        +     D               
Sbjct: 61  GTNPAQVGLGVQIAAISTTFTQGPAETTGVDTDLMIQGDGFFVLDDGGQRVYTRNGAFSF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  + +   L +  + +   V      +A ++    +                   
Sbjct: 121 DANGNLVSANG-ALVQGWLASGGVVNTTGPVTAIKLPLGTSMPPSATTTATLAGNLPADG 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                D       +K  A  +  +        S  + I      +   V  + D TT   
Sbjct: 180 SGSPIDNNLTVYDAKGQATQYTLEYSYDTTSNSWKLDILPPGGGSPTNVPLSFDSTTGQY 239

Query: 230 TVPRDINFEKMN-SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                        + ++       +  G  V          G + +     D  +     
Sbjct: 240 NGTNPQTVTLGGQNISLDLSGLTAYGGGNTVEVVSSDGSAMGSLASYTISPDGTIQGVFT 299

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
              +     I   +  +P             +              S       +   + 
Sbjct: 300 NGMKQPLAKIALATFNNPGGLTKVGTSEYAESVNSGAAQIGASGTGSRGQLAAGELEGSN 359

Query: 349 SFLRDGGSV 357
             L    + 
Sbjct: 360 VDLSQEFTN 368


>gi|329898289|ref|ZP_08272372.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088]
 gi|328920854|gb|EGG28297.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088]
          Length = 975

 Score = 90.9 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/418 (13%), Positives = 120/418 (28%), Gaps = 4/418 (0%)

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
            FD   +  S   G    +     L          N           DS  S ++N  + 
Sbjct: 559 YFDGKFNISSGTTGDASSIAVRNILTASDGVTKSANELGLQLFGLEYDSALSDAENTIKV 618

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + I N   V    +T A  +       D      ++   R L+ +     A     
Sbjct: 619 DPETSAIANRPAVRGTASTPAIVIGNQM-GVDPNAPFSVTADNRNLTVIVDNISAQIELD 677

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTI-VRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
              +   DF D  +  +  +++ +G     V+ + D+ V    G T  +     +     
Sbjct: 678 LGDYQIGDFTDMVEEKINLMADNVGRQVSGVKVDFDLGVIRFTGATATDDSFLQVAGSAD 737

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                   +       + +  +   A     +              Q+  +         
Sbjct: 738 FGLEDVDSAFGQTSTYIELDPDTQGASTPLYVFQDRNGTWIETTDKQDFDENDIPQWRPI 797

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
           F +K  +  N+       +              I+     + Q+ S  + L    + + +
Sbjct: 798 FLDKGELTFNTSGTLVSPVNRVTLASSEITGNQINLDYAASTQFNSPFAVLSQSQNGAPE 857

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                 N+     ++  Y +   K+     +A   T   L +   +  G++  + S    
Sbjct: 858 GDLVGVNIGEDGLVVASYSNGSQKSLGKIILANFATPKGLRQVGNS--GFVASSESGEAR 915

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   F  I    +    V+L  EL  LI  ++++  + K I  +  +  T++  
Sbjct: 916 QGEPGSAGFGTIRAGATERSNVDLTAELVNLITAQRNFQANAKAIETSSTLTSTIINM 973



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 21/239 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F  +    N A+ + +    NI N+    + R                        V  
Sbjct: 2   SFYTSLTGLNAATTELSVTSNNIANSATAGFKRSSASFGDIFATSPLQRASAVVGQGVAL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +  ++      +   S+++        F  L+          +           + ++  
Sbjct: 62  KEISQEFSQGFVQFSSNSLDLAITGDGFFPLQ------SSDGSRVYTRNGSFMLNEQNQM 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSA-----REVQKIRADADKEIELEISNLRRFLSEL 170
            N +   L    +D+  +   +   SA     + V + RA  + E+ L + +    ++  
Sbjct: 116 VNSAGQALLSLPVDSTNKADFSQPPSALSIPRQTVSEFRATTEVELGLNLPSNAEPITAN 175

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              N    +   +    +     + +      +    +     N        DG  +  
Sbjct: 176 FNPNKPETYHRTTSLTVYGASGSQHLATIYYVKTQNATADTPENKWQTHVYLDGQRVDS 234


>gi|209521589|ref|ZP_03270287.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160]
 gi|209497972|gb|EDZ98129.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160]
          Length = 502

 Score = 90.9 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/489 (10%), Positives = 108/489 (22%), Gaps = 34/489 (6%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70
              I  NI NA+   +            N                    +      +   
Sbjct: 17  LDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTQLSEVQQQFSQGTITTT 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD-----SLESYSKNLSEDILGK 125
           + A+        F  +    +     N       +          L  Y+ N S  I   
Sbjct: 77  NQALNVAINGNGFFQMSNNGTLTYSRNGVFQLDKNGFITNAEGLDLMGYAANSSGIINTA 136

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +            +  ++     + + +  + +             +      T +  
Sbjct: 137 QTVPLTVPTANIAPQATTKITA-GLNLNAQDNIMLGTPTVTAGATNTGSLTTTGATITNA 195

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A    D+  +     +      T +  +           TL        +    +  + 
Sbjct: 196 AAGTNTDKYTINFTSATAYTVTDTTLGTSTSGTYTAGTAITLGNGESITFSGTPASGDSY 255

Query: 246 TSESNPIFIDGVVV----------------SSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           T   NP   +                     S   +            +           
Sbjct: 256 TVTQNPTTFNQNSSSTYNYSTSTTAYDSLGGSQTVNMYFAKTGSGTWDVYAGTSTGTATL 315

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +        G+       +G + +  G F         +   Q I+  +    QY     
Sbjct: 316 VGTANFNSSGTLVSTTNASGVATSTLGAFSLSIPTTDGSGTPQNITLNMASTTQYGGKDG 375

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +           +     L  +Y +          +A  +    L++   N  G
Sbjct: 376 VNSLSTNGYAAGTLTSFTVGSDGTLTGNYSNGQTAALGQIVLANFSNQNGLVDLGNNEYG 435

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S    +          +         V+L  EL  LI  +++Y  + + I    
Sbjct: 436 Q--TAASGVAQISTPGSTNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQ 493

Query: 470 KMLQTLLEG 478
            + QTL+  
Sbjct: 494 AVDQTLINL 502


>gi|238028849|ref|YP_002913080.1| flagellar hook protein FlgE [Burkholderia glumae BGR1]
 gi|237878043|gb|ACR30376.1| Hypothetical protein bglu_1g33140 [Burkholderia glumae BGR1]
          Length = 412

 Score = 90.5 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/472 (9%), Positives = 94/472 (19%), Gaps = 68/472 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR---SENKNMFDKV 66
             +    AS     I  NI NA+   +       +    N               +    
Sbjct: 6   GLSGLQGASSDLDVIGNNIANANTVGFKAASAQFSDLYANSVSGAVANGIGIGTQLATVA 65

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                      +   S           +    +      +   +      N +   L   
Sbjct: 66  QVFQQGGFATSQNPLSMAISGNGFFQVNSNGVTTYTRDGQFSPNASGNITNSAGGQLMGY 125

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
            ++    +                +    + L            + +       T     
Sbjct: 126 GVNADGSI----------------NTSAIVPLTAPQGNIPPKATSSITGQFNLSTTDTAQ 169

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +   +  D     + + +     + N   + +Y    TT+                   
Sbjct: 170 TNSPFNFSDSSTYTLKQPVQAYDSLGNAKTVNLYFVKSTTVGSWEVY------------- 216

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                   +         S    GK+  L                  +            
Sbjct: 217 ----AGADNTAPTDLGTASFDSSGKLTGLTA----KSATASGNKFTFSIANTTGAVTPQS 268

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           ++ +                                                        
Sbjct: 269 VSLDLTGSTQFGATK--------------------------SGVSNLVADGFASGALQNY 302

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++A    +   Y +  +       V   N    L     N   +++   S    + +   
Sbjct: 303 SVAADGTITGSYSNGQSMKLGQVFVVNFNDPQGLTSIGGNQ--YIQTAASGVPQIGVPGS 360

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                I  S +    V+L  EL  LI  +++Y  + + I     + QTLL  
Sbjct: 361 TNHGTIKGSTTENSTVDLTGELVNLITAQRNYQANAQTIKTQQTVDQTLLNL 412


>gi|225628428|ref|ZP_03786462.1| flagellar hook protein FlgE [Brucella ceti str. Cudo]
 gi|225616274|gb|EEH13322.1| flagellar hook protein FlgE [Brucella ceti str. Cudo]
          Length = 456

 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/425 (9%), Positives = 106/425 (24%), Gaps = 8/425 (1%)

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +  K     S   G     Q        M        +             + +  + 
Sbjct: 36  DGLIFKRFRTRSCFAGNTLTCQELPMSLYGMMRTGVSGMNAQANRLSTVADNIANASTVG 95

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                                S   +  +R     +  +  ++    L+        ++ 
Sbjct: 96  YKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQG 155

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PRDI 235
              S +         D     ++           +      T  G  +        P + 
Sbjct: 156 PGGSTYLTRAGSFVPDKNGDLVNSAGYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEG 215

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +     +  + S        G    ++  S   KG+   L                 +  
Sbjct: 216 STAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNVSVKN 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G       +  +      +   +   +L     Q ++  +  + Q   + +  +   
Sbjct: 274 AADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVI 333

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +          ++     ++  Y +   K     P+A + +   +   + N   +L    
Sbjct: 334 NGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FLPSAE 391

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    L          I          ++ +EL+ +I+ ++SY  ++K+     +++  L
Sbjct: 392 SGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVL 451

Query: 476 LEGVK 480
           +   +
Sbjct: 452 VNLKR 456



 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 61  MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 120

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 121 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 180

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 181 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 240

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 241 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 300

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 301 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 360

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 361 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 420

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 421 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 453


>gi|254439743|ref|ZP_05053237.1| conserved domain protein [Octadecabacter antarcticus 307]
 gi|198255189|gb|EDY79503.1| conserved domain protein [Octadecabacter antarcticus 307]
          Length = 1412

 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/428 (12%), Positives = 118/428 (27%), Gaps = 9/428 (2%)

Query: 57   SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +      +      S    + L    E L   +    +  NS T        +++  S+
Sbjct: 986  RDTGAFTFESGTTGKSVRANKALGVEVEQLASNIQVGRYEINSLTGLAEIGDGTIDLASR 1045

Query: 117  NLSEDILGKTVIDNAEEV-----VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
             L+E       +     +         +  A+ +     D      + ++   R  +   
Sbjct: 1046 VLAEGGSHVMGVGLGRNIGFLEGTGLKSQPAQAIGNPAKDPLNSQPIFLNASNRETTFNV 1105

Query: 172  VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             VN           +        ++L Q+I+++    T        V Y         T 
Sbjct: 1106 SVNGVNSLIEIPGGNYIG-STLAELLEQRINQMRDPDTGRTIGGVTVKYQPTENNFVFTT 1164

Query: 232  PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                +   +               GV       + V            +    I +++ +
Sbjct: 1165 GTTGDTSTIRVQGPAKLGLDDVPLGVGSVPTIANLVQATNENGTPLFVNEDGDIVESEPN 1224

Query: 292  EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN-KLCQGISETICVNPQYRSNPSF 350
             +       + ++  +  +              D  +      +      + Q  +  S 
Sbjct: 1225 NLVTDYFPLYLDEGELTFDKTGRLISPQGLTRYDSQSETFSISLDIDYSASSQLATPFSV 1284

Query: 351  LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                 +       +  N+     L  +Y +  NK      +A  N    L +       +
Sbjct: 1285 NNLDQNGFTSGRLDGLNIDSNGLLRANYTNGQNKPLGKIVLANFNNQNGLKQVGNA--TF 1342

Query: 411  LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +E   S    +       F  I         V++ EEL  LI  ++++  S+K I  + +
Sbjct: 1343 VETASSGEPIIGEAGTEGFGSIQSGALERSNVDITEELVNLITAQRNFQASSKAIETSTQ 1402

Query: 471  MLQTLLEG 478
            + QT++  
Sbjct: 1403 LTQTIINI 1410



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/378 (10%), Positives = 85/378 (22%), Gaps = 21/378 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55
            F  A    N A    A+   NI N     +                   +    +    
Sbjct: 2   SFYTALTGLNGAQADIAASSNNIANVGTTGFKLSRAEFGDIFATSPLQNSTSSIGSGAIL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      + A  +A+      Q F ALK  +++                       
Sbjct: 62  KGVKQQFTQGNISASLNALDMAISGQGFFALKPSLTSTQV----VYTRNGSFNVDNNRNV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S   L    ++    V      SA  ++      D +   ++       +   VV +
Sbjct: 118 VDSSGQFLLTYPVNEDGSVTAKDIDSAVPLRLPVTSGDPQGTTKVDLAVNVPANADVVTE 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
             KF            D  D      S    I   + N     VY           P + 
Sbjct: 178 NQKFVDG------YVFDPNDSESFTNSTSFTIFDDLGNPTIATVYFIKTQRANAADPTNK 231

Query: 236 NFEKMNSYTVTSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              ++         N +  +              +          ++       +LD++ 
Sbjct: 232 FETRLVINDEVVPPNLVPAVVDDGRQIFIDQFGNQTTDVPDPSYFNTGRSSPLYKLDDLR 291

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +    +     A   +          I +                  Y  N   L + 
Sbjct: 292 TRVPSQPAALTGEASGFDFGDEGTREIEIVNDPMLFGATYEADSSNQGVYWGNDFLLVNI 351

Query: 355 GSVSKKFLWNVKNLAGYP 372
              ++    +++      
Sbjct: 352 DDGTRPVSIDIRAGRYNA 369


>gi|317051681|ref|YP_004112797.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5]
 gi|316946765|gb|ADU66241.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5]
          Length = 1341

 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 336  ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                   QY S     +   +  K+      ++     +   + +  ++      +A   
Sbjct: 1199 GGFDGFTQYASKSDTTKQRQNGYKEGTLEDYSIDENGIVYGLFSNDLSRPLAQLTLADFT 1258

Query: 396  TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
                L +   +   ++  N S   +        F  I  +      V+L  E + +I VE
Sbjct: 1259 NPQGLSKVGNSL--FVSTNASGQPNYAAPGSAGFGTIISNSLEMSNVDLSMEFTQMIIVE 1316

Query: 456  QSYNISNKLIMFTDKMLQTLLEGVK 480
            + +  ++++I  +D M+Q +L   +
Sbjct: 1317 RGFQANSRIISTSDSMIQEVLNMKR 1341



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/257 (8%), Positives = 56/257 (21%), Gaps = 7/257 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQR 56
           +L       +   N  +    I  NI N +   Y +                 V  +   
Sbjct: 1   MLQSMYAGVSGLVNHQRSMDIIGNNISNVNTFGYKKARAGFADVMSISIGGSGVNPMQV- 59

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                +    L      I                    +   +          + E    
Sbjct: 60  GIGTRVNSTNLIFSQGGIEASNKSTDMAIAGRGFFVVSNGAQNFFTRNGNFTFNKEGMMV 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                ++   +    +      N +            K      SN+    +     +  
Sbjct: 120 TPDGLVMQGRMATQNQYGEFTINPTTVVGNIQIPVGIKSPASPTSNVELGGNLNAEASGT 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I      +  A    D   +  ++ + +  +              +    L+++    ++
Sbjct: 180 ILSTPVLRTAADGNKDLSTLFNEQGNALSILDDQAVTFKSHATALTSMGQLYDSADTGLS 239

Query: 237 FEKMNSYTVTSESNPIF 253
                ++ VT   + + 
Sbjct: 240 IVDNETFKVTITKDGVQ 256


>gi|255605408|ref|XP_002538389.1| Flagellar hook-associated protein, putative [Ricinus communis]
 gi|223512404|gb|EEF23994.1| Flagellar hook-associated protein, putative [Ricinus communis]
          Length = 283

 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 104/284 (36%), Positives = 163/284 (57%), Gaps = 4/284 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--ISPENVTVVTQRSE 58
           M+L    N A+    N S   A +  NI NA + +Y RR  +TT       +TV  +R+E
Sbjct: 1   MALSTTLNTAKATLGNTSLSSAVVSNNISNASSSDYNRRAAVTTVNTLTGAITVKIERAE 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +  +  + L A S   G+Q+ L   ++L  +M  +++    P+ Y++ L+++L +Y+ + 
Sbjct: 61  DSALLKQYLSAASDDAGKQKFLAGMKSLSVVMGGEEYTAA-PSTYLASLQNALNTYAASP 119

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           ++  L   V+  A +     NTS + VQ++R DAD EI+  I+ L + L +    ND +K
Sbjct: 120 TDITLASAVVSAATDTTNALNTSTKAVQQLRVDADSEIDSTITRLNQLLKDFGDANDQVK 179

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
           + T    D ++ LD+R+ LL++IS IIGIST  R  ND+ +YT+DGTTLFET PR I+FE
Sbjct: 180 YATQVGRDPNNALDKREGLLKEISGIIGISTATRPGNDVAIYTTDGTTLFETTPRKISFE 239

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVP-KGKIKALLQIRDS 281
              +Y   +  + IFIDGV+V +  GS    KG + ALLQ+RD 
Sbjct: 240 SRAAYDADTTGSGIFIDGVMVKTGSGSNTTAKGSLPALLQLRDE 283


>gi|223038348|ref|ZP_03608642.1| flagellar hook protein FlgE [Campylobacter rectus RM3267]
 gi|222880205|gb|EEF15292.1| flagellar hook protein FlgE [Campylobacter rectus RM3267]
          Length = 784

 Score = 90.1 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/429 (9%), Positives = 103/429 (24%), Gaps = 10/429 (2%)

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK---LRDSLESY 114
              +     +      I  +  + +     + ++ +          + +   L  +    
Sbjct: 359 IGNDFKTTNIITAYQYIYNKTQVNATHTYNDAVAREVTTTEDLREAMQRDARLWTNYTGT 418

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               +               + N      EV        +              + T   
Sbjct: 419 VVGNTPGPNTTPDPAAFAAALANNKNDGVEVTVNEHGQFQVKNPSGDAFNSDDGDDTDDT 478

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +  +A       ++ +  +S     +          +    G+       R 
Sbjct: 479 TGNIPPGTANTNADANDHNMNLTVTGLSNAAN-NVTENVKFTASMAPLSGSLSSGNATRV 537

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +   M +++ +++          +  +               +   V    +   D   
Sbjct: 538 TDSLNMAAHSSSTDLFDSLGTKHNIKIDFVKRGYTPNGGTEWTMVIQVAEPNRINPDGEP 597

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG----ISETICVNPQYRSNPSF 350
             +I  +   +P    +   P                       +  +       ++ S 
Sbjct: 598 ANVITGYVRFNPDGSLATYSPASITFGAQNGSAGGQHIELKLGTTAQMDGLASTDNDSST 657

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                        N   +     L+  + +  +       VA  + N  L     N    
Sbjct: 658 ADISQDGYASGELNGIRIDQSGTLVGSFTNGRSLGLAQVGVAKFSNNEGLSSEGGNLFSR 717

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                S    +          IS S      V+L   L+ LI V++ +  ++K I  +D+
Sbjct: 718 --TANSGDPVIGAAQTAGRGKISSSSLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDE 775

Query: 471 MLQTLLEGV 479
           ML TLL+  
Sbjct: 776 MLNTLLQLK 784



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/214 (7%), Positives = 32/214 (14%), Gaps = 31/214 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++                      NI N +   +                          
Sbjct: 1   MMRSLWAGVTGLQAHQIAMDVEGNNIANVNTVGFKYSRANFDDLIYQTSRIATGPQNRHG 60

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V   +            L               F      M + D    +
Sbjct: 61  GVNSMQVGLGVQTNSTTRI---FKQGSLQTTDKQTDIALQGDGFF-----MVSPDGGKTT 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                            +   +I+   + D     +                        
Sbjct: 113 YYTRNGDFSRDSVGNFVDNGGNIVQGWMRDEVTGEIDPTRPIGDIKIPSGLTVPARATTN 172

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
           I+      S   V N  I      +H      ++
Sbjct: 173 IALKGNLDSGNDVGNKKIPIYQLDQHHNWTDTNK 206


>gi|330447903|ref|ZP_08311551.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492094|dbj|GAA06048.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 398

 Score = 90.1 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 115/474 (24%), Gaps = 77/474 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  +  + Q  +I  NI N                   V+    +         
Sbjct: 2   SFDIALSGLDATNVQLNTISNNIAN-------------------VSTSGFKESRTEFSAV 42

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +  +    + Q+F+    +              ++           +  + +  +
Sbjct: 43  YNGMQAGGVEVAAISQNFDKTGSI------TGTGRPLDLAISGSGFFVTKDHTGQTLYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           + +  +++     + +  ++Q    DA              L    V N  I   +    
Sbjct: 97  SGVFGSDKDNNIVSNNGAKLQGYTVDA-----------NNNLQAGAVGNLKITTASLPAK 145

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +     ++  +       I+    N+ D    +                +       
Sbjct: 146 ATDELAFVANLDARSSVIDPAINPFDPNSTDSFNSSYTSKVYDSLGNPHTVTQYFTKTNA 205

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                 + +DG    S   +                                        
Sbjct: 206 NEWQVNVVVDGAATPSQTQNV--------------------------------------- 226

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +              +        I+  I    Q+ ++     +  +         
Sbjct: 227 AFNTDGTLQLPTAPFAVNFNPAGADAANINIDIAGTTQFGADFGVSTNAPNGYTSGELAG 286

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +  ++      +A       L++   N   W++   S +      S
Sbjct: 287 VRVEDNGMVFATYTNGQSQLQGQVMLADFANPQGLVK--TNGTSWIQSFSSGAPVNGAPS 344

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +         V+L  EL  L+  +++Y  + K I  +DK+ Q+L   V
Sbjct: 345 TGTLGGLVAGALEGSNVDLTSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 398


>gi|86747891|ref|YP_484387.1| flagellar hook protein FlgE [Rhodopseudomonas palustris HaA2]
 gi|86570919|gb|ABD05476.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 421

 Score = 90.1 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/487 (12%), Positives = 119/487 (24%), Gaps = 74/487 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV-------- 52
           MSL    + A +  N  S   A I  NI N+    Y            N +         
Sbjct: 1   MSLSGALSSAISALNAQSSALAMISDNIANSSTVGYKTSSASFESLVTNTSGASSYSSGG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT  + +      +L + ++A         F  +   ++      ++            +
Sbjct: 61  VTASATSNITTQGLLTSTTTATNIAIQGNGFFPVTTSLTG----GSTLYTRNGAFTIDSD 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y  N                           +   R D D  +    S       + +V
Sbjct: 117 GYLVNNG-----------------------AYLLGWRTDTDGNVIGTASEGNLVPIDTSV 153

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
              +    T +   A+   D            +  +          + TS    +  T  
Sbjct: 154 AKTSSGATTTTSFAANLPADAA----------VNDTFTTSMPLYDSLGTSSTMQVTWTKT 203

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +  +         +  +   +      +   S    G + +                  
Sbjct: 204 AENTWSASFGKPTLASDSTTTLAAAPTDTISVSFNSDGSLASTSP--------------- 248

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                             +  +       G KD   +L   +S          S+     
Sbjct: 249 ---SPATVTISDWTTGAANSTITLDLGTVGGKDGLTQLSSDLSTPAVTIDSIESD----- 300

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      +   +     +   Y +         PVA    +  L   +        
Sbjct: 301 ----GLAFGKLSSVAVGDDGTVNATYSNGETIAIYKIPVATFTASAELEAQSGGLYAT-- 354

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S S  L          I  S   +   +  E+ S +I  +Q+Y+ ++++I   +KM 
Sbjct: 355 TAASGSATLQESGANGAGTIYGSELESSTTDTNEQFSSMISAQQAYSAASQVITAVNKMF 414

Query: 473 QTLLEGV 479
            TL+  +
Sbjct: 415 DTLIAAI 421


>gi|242238969|ref|YP_002987150.1| flagellar hook protein FlgE [Dickeya dadantii Ech703]
 gi|242131026|gb|ACS85328.1| flagellar basal body FlaE domain protein [Dickeya dadantii Ech703]
          Length = 399

 Score = 89.7 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/473 (9%), Positives = 109/473 (23%), Gaps = 76/473 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F++A +  N AS     I  NI N++   +            +  V             
Sbjct: 2   GFSQAVSGLNAASSNLDVIGNNIANSETTGFKSASVSFADIYADSAVG------------ 49

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                        L     ++ +  +     +      ++  +      + +       +
Sbjct: 50  -------------LGVKVASVTQNFTDGTVESTDVGTDVAISKTGFFRVTDDSGSVYYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 +        +   V    A          S         + +  +     +   
Sbjct: 97  NGEFTLDSDRNLVTKTGYYVTGYAATGTPPSIASGSQPTVLNISSSGMAASATSTASFSA 156

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +     D              I+T     +      +   T ++++          + T 
Sbjct: 157 NLDSGEDA-------------ITTTFDATDSSTYNWTQSLTTYDSLGNVHTVNLYFTKTA 203

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +      +D    S+                                            
Sbjct: 204 DNTWEVHALDSSDSSATA------------------------------------QDLGAI 227

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             + + +             L+       S       Q  S+ S                
Sbjct: 228 SFSTSGQITGTTSFNISTNSLNGSAANTFSIDFTGTTQQNSDSSVNTKSQDGYTAGSLTS 287

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +S  +      +A  +    L     N   W E + S    L    
Sbjct: 288 YTINDDGTITGTYSNSQTQLLGQIVLASFSNPQGLSSQGDNV--WSETSASGQALLGTAG 345

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             VF  ++     +  V++ +EL  +I  +++Y  + + I   D +L TL+  
Sbjct: 346 TGVFGTLTSGALESSNVDISQELVNMIVAQRNYQSNAQTIKTQDAILNTLVNL 398


>gi|289433975|ref|YP_003463847.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170219|emb|CBH26759.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313634374|gb|EFS00969.1| flagellar hook protein FlgE [Listeria seeligeri FSL N1-067]
 gi|313639059|gb|EFS04046.1| flagellar hook protein FlgE [Listeria seeligeri FSL S4-171]
          Length = 411

 Score = 89.7 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/478 (8%), Positives = 105/478 (21%), Gaps = 67/478 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  N   Q  +    NI NA+   Y ++  +        T+ +        
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGG---- 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +            A+    +A    +       +           N   +I
Sbjct: 57  -----LYAGTNPMSFGSGAKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNI 111

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +       A        T   +     A       L  +     +   + +        +
Sbjct: 112 VYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLSGNLQPIQIPLNSAIPGEATKTGS 171

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +      ++D +  ++S    +       + + V    G                  
Sbjct: 172 LSGNIPLDWGEKDTINSELS----VYDNAGGKHKLQVNMKAG------------------ 209

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +  N  +   + +   + +    G +    Q   +     +N              
Sbjct: 210 -TPDANGNVSYDYEIQMDGKELTPPVTGTLNYNAQGELTNAAALRNIQINTTVNGKQIDM 268

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           + +     +     +F           +               S+ + +         F 
Sbjct: 269 DLNLSGLTNYGTNQVFSPTSDGKGAATVKDYAITDSGYIAVSYSDGTVIPVAQLAVATFS 328

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +            S +  +      G                             
Sbjct: 329 NEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAGG-------------------------- 362

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    IS S      V+L  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 363 ---------ISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 411


>gi|297521522|ref|ZP_06939908.1| flagellar hook-associated protein FlgK [Escherichia coli OP50]
          Length = 306

 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 7/269 (2%)

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
             R+ +      + G              K             F  G             
Sbjct: 44  TFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGD 103

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
             I A +    +V+        +  +  +   +         +    +            
Sbjct: 104 VAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGT 163

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                S T+        N   L    +            +          +      +  
Sbjct: 164 PAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDN-------RNGQALLDLQS 216

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
               +    +  +   + +  +    +           V   +S    +  GVNL EE  
Sbjct: 217 NSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYG 276

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L + +Q Y  + +++   + +   L+  
Sbjct: 277 NLQRFQQYYLANAQVLQTANAIFDALINI 305


>gi|84514833|ref|ZP_01002196.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53]
 gi|84510992|gb|EAQ07446.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53]
          Length = 1778

 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 90/320 (28%), Gaps = 6/320 (1%)

Query: 161  SNLRRFLSELTVVNDAIKFKTASKHDAHD--FLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            +   R  +    VN           +       ++    + ++ + +   TI        
Sbjct: 1461 NPANRETTFNISVNGINAVIDIPGGNYIGSTLAERLQERINQMQDPVTGRTIGGVTVRYQ 1520

Query: 219  VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
               ++      T   +          +  +  P+ I  V   +N   A  +  +   +  
Sbjct: 1521 PDDNNFVFTTGTTGTESTIRVRGPAKLGLDDVPLGIGSVPTIANLVQATNENGVPLFVNE 1580

Query: 279  RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
               +V    N L E    L  +  E           P        +         +    
Sbjct: 1581 NGEIVDSEPNNLVEGYYPLYLNEGELTFDKTGRLISPQGLT--RYEAQTETFSISLDIDY 1638

Query: 339  CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
              + Q  +         +       +  ++     L  +Y +  NK      +A  N   
Sbjct: 1639 SASSQLATPFVVNNLEQNGFTSGRLDGLSIDATGLLRANYTNGQNKPLGKIVMANFNNQN 1698

Query: 399  TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
             L +       +++   S    +       F  I         V++ EEL  LI  ++++
Sbjct: 1699 GLKQVGNA--TFVQTAESGDPIIGEAGTEGFGSIQSGALERSNVDITEELVNLITAQRNF 1756

Query: 459  NISNKLIMFTDKMLQTLLEG 478
              ++K I  + ++ QT++  
Sbjct: 1757 QAASKAIETSTQLTQTIINI 1776



 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/365 (10%), Positives = 73/365 (20%), Gaps = 23/365 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV----------TVVTQ 55
            F  A    N A    ++   NI N     + R                      +    
Sbjct: 2   SFYTALTGLNGAQSDISATSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      + +  +A+      Q F ALK                            
Sbjct: 62  KGVKQQFTQGNIASSLNALDMAISGQGFFALK----PSQTSTQVVYTRNGSFNVDNNRNV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S   L    ++    V      SA  ++      D +    +       +   VV +
Sbjct: 118 VDSSGQFLLAYPVNEDGSVTAKDIDSAAPLRLPVTSGDPKATSLVDLAVNVPASADVVTE 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP--- 232
             KF            D  D      S    I   + N     VY           P   
Sbjct: 178 KEKFTDG------YTFDPNDSESFTNSTSFTIFDDLGNPTIATVYFIKTQRATAEDPTNK 231

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +      N          +      +  ++          A   +     P+++     
Sbjct: 232 FETRLVINNQVVPPDLVPAVTRSNEQIFIDRFGNQTTSVPDASYTLEQKSSPLYKLDEQN 291

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                  +         N  +     I      L        +        +  +   + 
Sbjct: 292 DRAPSQPAILTGQASGFNFGDEGTGEIEIVTDPLQFGATYEANPNSNQGVYWGRDFLLVN 351

Query: 353 DGGSV 357
                
Sbjct: 352 IDDGT 356


>gi|296445196|ref|ZP_06887156.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b]
 gi|296257370|gb|EFH04437.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b]
          Length = 413

 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/480 (11%), Positives = 109/480 (22%), Gaps = 68/480 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M+  A+FN +       +    ++ +NI N+    Y    T  +    +V   +  +   
Sbjct: 1   MTATALFNTSVMGMAAQASALGAVSQNIANSGTVGYKDATTQFSTVLSSVQNGSDPAGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLS 119
                V         Q                  D   N+            E    N +
Sbjct: 61  TAQTGVAVTAQGNTQQTSSTTDLAIQGSGFFVVSDSSGNTLLTRAGSFEPDSEGRLVNKA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+A             +Q +       I    +      +     +     
Sbjct: 121 GYYLMGYSADDANSPSDI-----AGLQTVHVAIGSLIATPSTEGSLTANLQQGADVVDSS 175

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S +DA                                 +    T ++     +  + 
Sbjct: 176 ALPSTNDASA----------------------------TYTSKTSVTAYDNYGNSVKLDV 207

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S T  +E      D     S+ G             +         +       V  G
Sbjct: 208 YFSKTADNEWEMAVYDSSKADSSSGGFPYSEGPLTTQSLSFDSNGALTSGSPTTIDVPNG 267

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                D                                        S+P+   +      
Sbjct: 268 QTLTLDLSGMTQLGSSFS---------------------------VSDPTINGNAAQAVA 300

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +         L               P+A +++   L   + N+        S + 
Sbjct: 301 SVNVDSDG-----TLNYVLTGGQTVPAYKIPLANVSSPSGLQSVSGNAFAT--NASSGTA 353

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            + +     F  I      +  V+L  +LS +I  ++SY  ++++     +++Q L    
Sbjct: 354 YVGLPGTGSFGDIQSKSLESSTVDLATQLSNMIVAQRSYTANSQVFQVASEVMQVLNNLK 413


>gi|115522802|ref|YP_779713.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53]
 gi|115516749|gb|ABJ04733.1| flagellar basal body FlaE domain protein [Rhodopseudomonas
           palustris BisA53]
          Length = 421

 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/484 (10%), Positives = 109/484 (22%), Gaps = 67/484 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    + A +  N+ SQ  A I  NI N+    Y     +      + +  +  S   
Sbjct: 1   MSLTGALSSAISALNSQSQSLAMISDNIANSQTVGYKTTSALFDSLVTSSSSASSYSSGG 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY----NNSPTHYISKLRDSLESYSK 116
                  +  S  +       +   +               ++              Y  
Sbjct: 61  VTVLSKSNISSQGLLTTTTSSTDIGISGNGFFPVSTALNGGSTLYTRAGSFTIDDSGYMV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L     D    VV    +                                 N A
Sbjct: 121 NASGAYLLGWRTDADGNVVGGTGSGD-------------------------LVPIDTNIA 155

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               +A+           D  +                       +    L++++    +
Sbjct: 156 ATSGSATTETTVALNLPADAAVND-------------------TFTSSMPLYDSLGTANS 196

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +     T  +       +  + S +  +         +    D  +    +        
Sbjct: 197 MQITWEKTADNTWTASVANPTLTSDSTKTTGTASGTITITFNSDGSLKSTSS-------- 248

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                    P A +            I      +      T   +               
Sbjct: 249 ---------PTAFSVSGWTTGAANSTITLDLGTIGGIDGLTQKSSGSTTPAIDLTSIESD 299

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            S     +   +     +   Y +    +    PVA       L   +           S
Sbjct: 300 GSAYGKLSSVAVGDDGKVNATYSNGTTISLYKIPVATFAAPDQLQVKSNGLYA--ATADS 357

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +  +          I          +   E S +I  +Q+Y+ ++++I   ++M  TL+
Sbjct: 358 GTAIVQQSGSNGAGTIQGGKLEASTADTNTEFSNMISAQQAYSAASQVITAVNEMFDTLI 417

Query: 477 EGVK 480
             V+
Sbjct: 418 SAVR 421


>gi|83647173|ref|YP_435608.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396]
 gi|83635216|gb|ABC31183.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396]
          Length = 651

 Score = 89.7 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/454 (10%), Positives = 115/454 (25%), Gaps = 12/454 (2%)

Query: 35  NYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD 94
            Y  +    T +  + + VT  + +       L  +   I      ++        +A  
Sbjct: 199 GYAAQTITVTQADGSTSTVTIPANSSANEIAALFNNVDNIDAAASTRATITAAGFNNASG 258

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE-----VVQNFNTSAREVQKIR 149
                    +     +L      ++       V    +      +    N  +       
Sbjct: 259 TMQVFINGVLFDGYTNLTDLGDAINSSSSLIGVRAVLDGTDLVVIDNRGNDLSFSFNGAA 318

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            D       + +   + LS              +  D          L    +    ++ 
Sbjct: 319 GDQFLVQGDDAAATSQTLSTALTDVVVGGGVNLTIQDGVTVASGTTDLFATFTGTPFVNN 378

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
           +    ++     +  TT+++++               + + P  +  +    +       
Sbjct: 379 VFDPADENTYNHATSTTIYDSLGNSHVLTTFFVKEPQTATTPDNLWTMYALIDGQDIGDP 438

Query: 270 GKIKALLQIRDSVVPIFQNQ-----LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                        +   Q+      L +   +   +    D     +E    +     + 
Sbjct: 439 LVTGGTPTRASYSLVFDQDGSINEVLSDDVLISNWTPLAPDGTPNGAEGPLNVADGGTLP 498

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             D          +    QY S  +      +          ++     +   Y +  +K
Sbjct: 499 IPDPPTSSNFFVDLGTTTQYGSAFAVNDLQQNGFTTGRLIGLDVDDGGVIFARYTNGESK 558

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A  N    L         W+E   S +  +          I  S      V+L
Sbjct: 559 VLGQVALANFNDIQGLAPVGE--TTWVETFNSGNPVIGSPGTASLGAIRSSSLEDSNVDL 616

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            E+L  LI  +++Y  + K I   + + QT++  
Sbjct: 617 SEQLVGLIIAQRNYQANAKTIETANAITQTIINL 650



 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/401 (10%), Positives = 96/401 (23%), Gaps = 24/401 (5%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQR 56
           FN A      AS        NI NA    + R          N             V  +
Sbjct: 3   FNIALTGIRAASVDLEVTGNNIANASTTGFKRSRAEFGDLYANSFLSLGTNPVGDGVRVQ 62

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +      L    + +      + F  L      D +  +             E    
Sbjct: 63  KVRQEFAQGNLSFTENGLDLAINGEGFFIL------DTNNGDRRYSRAGAFGIDKEGNVV 116

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L   V +++  V         +   +  D    ++  ++        L   +  
Sbjct: 117 NSSGMHLQGFVANDSGVVSGVLGDLVIDDTSLAPDRTTRVDANLNLDASEPVLLERGDSL 176

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                             +      ++ I ++    +        +   T+      +  
Sbjct: 177 TSDGLLIGQAVDATAAGTNGANGYAAQTITVTQADGS--------TSTVTIPANSSANEI 228

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
               N+      +            N  S   +  I  +L    + +    + ++  + +
Sbjct: 229 AALFNNVDNIDAAASTRATITAAGFNNASGTMQVFINGVLFDGYTNLTDLGDAINSSSSL 288

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +              +N              ++      +    +    +  + +  GG 
Sbjct: 289 IGVRAVLDGTDLVVIDNRGNDLSFSFNGAAGDQFLVQGDDAAATSQTLSTALTDVVVGGG 348

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           V+      V   +G  DL   +  +   N +FDP      N
Sbjct: 349 VNLTIQDGVTVASGTTDLFATFTGTPFVNNVFDPADENTYN 389


>gi|157364671|ref|YP_001471438.1| hypothetical protein Tlet_1820 [Thermotoga lettingae TMO]
 gi|157315275|gb|ABV34374.1| protein of unknown function DUF1078 domain protein [Thermotoga
           lettingae TMO]
          Length = 631

 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/427 (7%), Positives = 92/427 (21%), Gaps = 13/427 (3%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R  +     +     +       +   +  + +  + D+          +     L   
Sbjct: 217 VRQTDPFSTKQSYTWTAYDENNAVVSVGYIVMNQYGNVDEAGVYQNLSATATTDGQLTQA 276

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             + +    G       +       + A  +            +   N      + T  +
Sbjct: 277 DVSGTIPADGDYHAVVLDSNGNVIFSDAVTISGGNFTISDSDIVNGQNYTVIFYDETTAS 336

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           D     T +        + R       S    +S         V         +      
Sbjct: 337 DEFTVATGANISIPTAGEARFYESDNPSNYNVLSYESPKYVTAVQMYDSLGNAYSVYVEF 396

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
               +  +             G  ++    +              D         ++   
Sbjct: 397 TRIGEFGNMKNAWIWKAYTASGEPITYIDANGQSS----------DGTNNYVGGIINFNE 446

Query: 295 RVLIGSFSEKDPIAGNSE-NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
              I                   L                 +       Q+  + S    
Sbjct: 447 SGRISGMYGVTWDGSQLTVGNTELRTISFSASHRGDSNVTAAIDFSSMTQFSGSNSAAFT 506

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             + +         +    ++I  + +          +A  N    L E   +   ++  
Sbjct: 507 YQNGNALGTLQSFAINENGEIIGTFSNGLTDILGQVALAVFNNPAGLTEIGDSL--YITS 564

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + S    +          +         V+L EE + +I  ++ +  + ++I   D +L 
Sbjct: 565 SNSGLAQIGTAGSGGRGTLIPGALEMSNVDLAEEFTRMIIAQRGFQANARVITTADTILG 624

Query: 474 TLLEGVK 480
            L+   +
Sbjct: 625 ELVALRR 631



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/367 (10%), Positives = 97/367 (26%), Gaps = 14/367 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++           N       +  NI N +   +         +        +  +N   
Sbjct: 1   MMRSMFSGVAGMRNFQYAIDVVGNNIANVNTVGFKGSRVTFQTALLQTMKAARSPQNNIG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +           L      + ++M+     N      ++   D     S       
Sbjct: 61  GTNPIQI--------GLGSQLATIDKIMTQGSFENTGNKTDLAIQGDGFFVLSDGSQYYY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +          +++  +VQ  RA  D        +  + + ++ +         A
Sbjct: 113 TRAGALSVDTNGTLIQSSTGYKVQGWRAIQDPATGTRYVDTNQPIGDIVISAGMTMPANA 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +     +      V     S  +       ++   V   +D   + +T P   + ++  +
Sbjct: 173 TTSATMEGNLNSSVGPTPFSMTVTDEDGNEHSVRFVFSKTDDDFVRQTDP--FSTKQSYT 230

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +T   E+N +   G +V +  G+    G  + L     +   + Q  +       I +  
Sbjct: 231 WTAYDENNAVVSVGYIVMNQYGNVDEAGVYQNLSATATTDGQLTQADV----SGTIPADG 286

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +   +  +S        A  I   +  +                + +   D  +V+    
Sbjct: 287 DYHAVVLDSNGNVIFSDAVTISGGNFTISDSDIVNGQNYTVIFYDETTASDEFTVATGAN 346

Query: 363 WNVKNLA 369
            ++    
Sbjct: 347 ISIPTAG 353


>gi|240137257|ref|YP_002961726.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1]
 gi|240007223|gb|ACS38449.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1]
          Length = 403

 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/480 (10%), Positives = 126/480 (26%), Gaps = 77/480 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL+ V     +  N  S + +++  NI+NA                        +  + 
Sbjct: 1   MSLIGVLRTGVSGMNAQSNRISTVAENIQNASTT-------------------GYKRTSA 41

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                +L +          +++               NS    ++   +     S     
Sbjct: 42  EFSSLLLDSGDVGNYNSGAVETTLRRSVSEGGPIASTNS-DKDLAIQGNGFFVVSDAAGA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             + +      +    N   +        + A+      ++ +         V       
Sbjct: 101 PFMTRAGNFVVDGKTGNLVNAGGFTLMGYSLANGTPNPVLNGVADLKPVNVSVMGQEARP 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +   + +   +  V     +  IG                +   +++ V R +  +  
Sbjct: 161 STAATVSGNLSFETPVYDPTATGAIG------------YSKKNSLKVYDNVGRPVTLDVQ 208

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T  +  +  F D    ++  G+          +    S +    N            
Sbjct: 209 MTKTAANTWSVEFFDPAAPTTPVGTTSVTFDGNGKVNGGGSALVAVPN------------ 256

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                                          + I+  +    Q   + + L    + S  
Sbjct: 257 ------------------------------GRSITVDLGGLTQLSGDHN-LSGTANGSSP 285

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +         +   Y D   K     P+A + +   L   A N         S    
Sbjct: 286 TSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTT--SAESGDIQ 343

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    Q     +         V++  EL+ +I+ +  Y  ++K+ M  +++L+TL+   +
Sbjct: 344 VGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMNLKR 403


>gi|218681813|ref|ZP_03529560.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894]
          Length = 400

 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/446 (8%), Positives = 91/446 (20%), Gaps = 47/446 (10%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD- 94
           Y    T  +      +     S       +   +    I             +       
Sbjct: 1   YKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVSDQGDISYTTSATDLAISGDGFFIVQG 60

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                        +   E    N +   L     D     V            +  +   
Sbjct: 61  PDGTPVLTRAGDFQKDDEGNLVNAAGFGLMGYSYDAGSPAVVVNGFDGLVPINVNQEGLT 120

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            I       +  L     +                            S  +  +T     
Sbjct: 121 AIASTSGVFKGNLDSGANIAPV-------------------APATLPSANLATTTTDTKK 161

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
             MV Y + G  +                      N  +   +  ++N  +         
Sbjct: 162 FSMVAYDTLGNKVMYDFYFTKTSVAATPPPAPPAVNSSWQVAIFRNANAATGGTT----- 216

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                                    +         + +    +  + G  ++ + +    
Sbjct: 217 --------------------SFPYSAGGAVGTTTLDFDANGKITNSTGTVNIADTVTGQT 256

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
            +                   +           + G   +   Y D  NK     P+A +
Sbjct: 257 IKMDLSGFTQLGAAFAGTGTPNGQAASPVKDVTIDGDGIVYAKYEDGTNKPLYRIPLANV 316

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
            +   L   + N        +S               I         V+L  EL+ +I+ 
Sbjct: 317 ASPDKLTLMSGNVYS--ANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEA 374

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++SY  ++K+      ++  L+   +
Sbjct: 375 QRSYTANSKVFQTGSDIMDVLVNLKR 400


>gi|295678058|ref|YP_003606582.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002]
 gi|295437901|gb|ADG17071.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002]
          Length = 510

 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/496 (10%), Positives = 106/496 (21%), Gaps = 40/496 (8%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----------ENKNMFDKVLHAH 70
              I  NI NA+   +            N                    +      +   
Sbjct: 17  LDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTKLSEVQQQFSQGTITTT 76

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY---------SKNLSED 121
           + A+        F  L +  +     N       +    + +           +  ++  
Sbjct: 77  NQALNVAINGNGFYQLSDNGTLVYSRNGVFQLDKNGFITNAQGLKLMGYAASSAGIINTA 136

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 +  A    Q   +    +     D        ++        LT     I    
Sbjct: 137 QTVPLTVPTANIAPQATTSITAGLNLNAQDNIMLGAPSVTAGGANTGTLTTTGATITNAA 196

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A  +  +  ++        +S   G ++  +        T                +   
Sbjct: 197 AGSNTDNYTINFTSPTTYTVSVNGGPASAAQPYTPGTAITLGNGESITFSGTPATNDSYT 256

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                +  N         S++  +    G  + +            N     A       
Sbjct: 257 VAPNPTAFNQNSSTTYNYSTSTTAYDSLGGSQTVNMYFAKTGSGTWNVYAGPATGTATLI 316

Query: 302 SEKD-------------------PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
              +                   P    +    G F         +   Q I+  +    
Sbjct: 317 GTANFNSSGTLVSTSQVNTPIANPPTFTATTTLGGFSLSIPTTDGSGTPQNITLNLGATT 376

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           QY                       ++    L  +Y +          +A       L+ 
Sbjct: 377 QYGGKNGVNNLSTDGYAAGQLTSFTVSADGTLTGNYSNGQTAALGQIVLANFANQNGLVN 436

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N  G    + S    +          +         V+L  EL  LI  +++Y  + 
Sbjct: 437 LGNNEYGQ--TSASGVAQISTPGSTNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANA 494

Query: 463 KLIMFTDKMLQTLLEG 478
           + I     + QTL+  
Sbjct: 495 QTIKTQQAVDQTLINL 510


>gi|297530598|ref|YP_003671873.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3]
 gi|297253850|gb|ADI27296.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3]
          Length = 288

 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 76/266 (28%), Gaps = 9/266 (3%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G  +           +     + S++          +   G+   +  + + L   D+V 
Sbjct: 23  GNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAGRGGTNPKQVGLGSQLAAIDTVH 82

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                Q       L  S      +   +       +     +        I     +   
Sbjct: 83  TQGSLQTTGRVLDLAISGDGFFILGELNNGNLINPLFTRAGNFYLDKEGYIVNADGLYLV 142

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF--DPVAGINTNVTLL 401
                +    G     +   + K+++   D + +Y D+     +     +A    N  L 
Sbjct: 143 GEGYQNGAFTGKRARIQIPTDAKSVSIGADGVVNYVDAVGNLQVAGRIRLAKFPNNDGLE 202

Query: 402 EYARNSIGWLEK-------NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           +   N              N  +    +   +     I         V+L EE + +I  
Sbjct: 203 KVGGNLFRETANSGTIINPNNQNEWIAYPPQESGAGSIVSGALEMSNVDLAEEFTEMIVA 262

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ +  + ++I  +D++LQ L+   K
Sbjct: 263 QRGFQANTRIITTSDEILQELVNLKK 288



 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 24/157 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +L           N   +   I  NI N +   + +  T+                    
Sbjct: 1   MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAG 60

Query: 44  --TISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
               +P+ V + +Q +    +     L      +        F  L E+ + +       
Sbjct: 61  RGGTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFILGELNNGNLINP--L 118

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                      E Y  N     L      N     + 
Sbjct: 119 FTRAGNFYLDKEGYIVNADGLYLVGEGYQNGAFTGKR 155


>gi|149195335|ref|ZP_01872422.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2]
 gi|149134527|gb|EDM23016.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2]
          Length = 869

 Score = 89.3 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 6/289 (2%)

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
                 S  I I+    +  D  ++T   + +  TV         +       ++    D
Sbjct: 583 KNTSPNSFNINIAGYPSDEQDNQLFTDTFSPINGTVAAGGTAFTQSMNAAVHTTSMDIFD 642

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
            +           K                 +             + + +     +   P
Sbjct: 643 SLGAKHTLTFHFRKTHTSTGPNDPTVWKWYAEVPEPSTLDQPAYGYVKFNSDGSINSYNP 702

Query: 316 GLFIADGIKDLDNKLCQGI----SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
              I +     +      +             + +  S                  +   
Sbjct: 703 PSLIFNPNNGAEPGQAVQLNFGEMGKFDGLTSFEAPSSTSGQTQDGYPGGDLQQLVVDQT 762

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +I  + +  + +     +A    N  L+              S    +          
Sbjct: 763 GTIIGVFTNGRSYSLAQVAIAKFVNNEGLMNEGGTLFS--ASPNSGDPIVGTAGTGGRGS 820

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I  S      V+L   L+ LI +++ +  ++K I  +D+ML TLL+  +
Sbjct: 821 IQPSALEMSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQLKQ 869



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/440 (7%), Positives = 87/440 (19%), Gaps = 16/440 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +  N           NI N +   +    T                +    
Sbjct: 1   MMRSLWSGVSGLNAHQIAMDVEANNIANVNTVGFKYSRTNFQNLLSQTIKSATAPQGDLG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L           L  +  +++ M       N      ++   D     S +  +  
Sbjct: 61  GKNSLQV--------GLGATVSSVETMFKQGSIQNTDKNTDMAINGDGFFVVSSDGGKTY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 D   +   NF      +  ++          I                      
Sbjct: 113 RYTRAGDFTFDAQGNFVDPNGYI--VQGWLADPDTHNIDTATGLKPISIPPGLTTPANPT 170

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           SK      L+  D +++K +    +      N       +      +     +  +  N 
Sbjct: 171 SKISIKANLNSGDHIIEKGAARPTVDQTADMNGLYDANGNKIALTPDVDSIQLAIDVNND 230

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T+ + +               ++   GK   +  + D +       +          F 
Sbjct: 231 GTIDTNTEVFTF-----KYGTSNSDNDGKFTTIKDLLDEINSKISQSIQGPDSYKYKVFL 285

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +    +  N+  +  +                     P   +          +    +
Sbjct: 286 NGNGQIVDPHNLIKIQDSTHTFLSSTNNILEDVFKSLQGPSTTTASIKAIQNSFIGADDV 345

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS-DSHDL 421
             + N  G    +                         +  A    G        D   +
Sbjct: 346 GELFNANGDAFNLQDGQGISVNISGLGETRKFVYTSQPISAATEGCGTTGGKYQPDKPIV 405

Query: 422 HMKSQVVFNHISESYSNTVG 441
              ++          S+   
Sbjct: 406 ADSNEGFHWLFYSDASSDSN 425


>gi|295690742|ref|YP_003594435.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756]
 gi|295432645|gb|ADG11817.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756]
          Length = 587

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/461 (9%), Positives = 108/461 (23%), Gaps = 21/461 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------TVVT 54
           MS+ +      +     S   A+I  NI N +   Y R  +  +    +       +   
Sbjct: 1   MSINSAMLAGVSGLVANSSALAAISDNIANVNTVGYKRSSSNFSTLVTSGSKNQTYSAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +++      +     + +S +        F    E        +          +    
Sbjct: 61  VKAQTHQFISQQGLTQSTTSNLDLSISGSGFFVATEKPENLTAADTRSFTRAGSFQLDSL 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y +N +   L   + D     +    +   ++  I          + + +    +  + 
Sbjct: 121 GYLRNDAGLYLQGWLADPVTGTITPDPSDLMQLSSINVGTVGGTAEKTTRVGINANLRSE 180

Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              A           +  F    D     ++    +        +      +   +    
Sbjct: 181 QPVAAAVSYKVGTAGSPSFTGVVDSATPAVTHSYDVVYSSTGLANPAASGDNEYQVDIKE 240

Query: 232 PRDINFEKMNSYT-VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +    +  Y   T   N   I     +   G+ +    I          +       
Sbjct: 241 NGVVVATGIVGYDVATGALNSSNIKPKAAAGPSGTPLLTVDIDTGAPATTVTLADLGIDT 300

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           D  A++          ++  +++       D    +     +G   T+ V+      P+ 
Sbjct: 301 DADAKLGKLYDPSTWSMSDYAKDNTKGVKPDFEIQIPLSDSKGGQRTVTVSLLKAPGPNQ 360

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG- 409
                      L N  N      +I    D   K+          T++T+L         
Sbjct: 361 WYAELRAKPGDLANNGNGLISTGIIEFTTDGKLKSTGGLFGTTNPTSITVLASGTALAVP 420

Query: 410 ----------WLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                      L  +  +       +       +       
Sbjct: 421 PAVQQPTWADALGIDTQEVQIDLASAAGGLTQYNSQSVVQS 461



 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/440 (10%), Positives = 100/440 (22%), Gaps = 5/440 (1%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             +         T     +   +  L +                        D    + T
Sbjct: 152 QLSSINVGTVGGTAEKTTRVGINANLRSEQPVAAAVSYKVGTAGSPSFTGVVDSATPAVT 211

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
           H    +  S    +   S D   +  I     VV                ++ + +    
Sbjct: 212 HSYDVVYSSTGLANPAASGDNEYQVDIKENGVVVATGIVGYDVATGALNSSNIKPKAAAG 271

Query: 162 NLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                 L+            T +        D +   L   S          N   +   
Sbjct: 272 PSGTPLLTVDIDTGAPATTVTLADLGIDTDADAKLGKLYDPSTWSMSDYAKDNTKGVKPD 331

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                 L ++                       +                    +++   
Sbjct: 332 FEIQIPLSDSKGGQRTVTVSLLKAPGPNQWYAELRAKPGDLANNGNGLIST--GIIEFTT 389

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                    L         +             V     AD +     ++   ++     
Sbjct: 390 DGKLKSTGGLFGTTNPTSITVLASGTALAVPPAVQQPTWADALGIDTQEVQIDLASAAGG 449

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             QY S         + +         +     +   + +   +      VA  +    L
Sbjct: 450 LTQYNSQSVVQSVNTNGTAFGNLTNIEVDEDGYVSAIFDNGVTRRIAQVAVATFSNPNGL 509

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   +   N S ++ L    Q     ++ S      V+L  E + LI  +++Y+ 
Sbjct: 510 KGV--NGNAYRVTNESGTYSLKPPGQGGAGSLAPSTLEASTVDLSTEFTGLITTQRAYSA 567

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           S+K+I   D+ML+ LL   +
Sbjct: 568 SSKIITTADQMLEELLNIKR 587


>gi|126653740|ref|ZP_01725658.1| flagellar hook protein [Bacillus sp. B14905]
 gi|126589704|gb|EAZ83840.1| flagellar hook protein [Bacillus sp. B14905]
          Length = 329

 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 67/226 (29%), Gaps = 2/226 (0%)

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           DG  + ++   A          +  ++ +          +   + +   K  +  ++   
Sbjct: 106 DGFFMVADANGAPDPDSGFIDEEGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 165

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
             +   D   + D+       E   +              G +         ++     +
Sbjct: 166 IVMEADDDGINPDDAPVASGDEGANLFDDDGVLTPDDGTVGPIRIPTTAKEISIGANGTI 225

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                +   K      +A       L +   N   + +   S +    + +      +  
Sbjct: 226 EYVDLNGERKWAGQLIMAKFPNAGGLAKSGGNY--YQQTANSGAAYGQVATVAGMGKVVP 283

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 284 GAVEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEVLQELVNLKR 329



 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 32/158 (20%), Gaps = 29/158 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRS- 57
           +L       +   N   +   I  NI N +   + +   +     + +    +  T    
Sbjct: 8   MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 67

Query: 58  ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96
                           +       L +    +        F  + +   A D        
Sbjct: 68  GVNPQQVGLGTQLAAIDTIHGGGSLQSTGRGLDLAIEGDGFFMVADANGAPDPDSGFIDE 127

Query: 97  ---NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
              NN+              Y  N     L        
Sbjct: 128 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 165


>gi|288573021|ref|ZP_06391378.1| protein of unknown function DUF1078 domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568762|gb|EFC90319.1| protein of unknown function DUF1078 domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 875

 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
              E I    QY S  +      +     +    +++    ++  Y +  N+      +A
Sbjct: 730 FDKEEIEGVTQYGSAFTTKPYTQNGYSMGILEDFSVSNDGTIVGIYDNGQNRGLYKMALA 789

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                  L++             S    +          I+ S      V++ EE + LI
Sbjct: 790 MFANPQGLVKTGNTCFSK--SINSGDPSIVNAMVEGAGTIAGSSLEYSNVDITEEFTDLI 847

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  S ++I  +D +L+ LL   +
Sbjct: 848 TTQRGFQASARVITTSDSVLEELLNLKR 875



 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/444 (7%), Positives = 93/444 (20%), Gaps = 15/444 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVV 53
           +L       +      ++   +  NI N +   + +   +                  V 
Sbjct: 1   MLRSLLTGVSGAKAHQKRLDVVGNNIANVNTVGFKKSTVVFQDLLSQTERGAMAPDGNVG 60

Query: 54  TQRSENKNMFDK----VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              ++   +  +            + Q           E      +   +      +   
Sbjct: 61  GVNAKQVGLGVQVAGIETIHTQGTVSQTGNRTDMAIQGEGYYVVRNGAENLYTRAGQFVL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
              S           +   +          ++  E+  I     +++E + ++   +   
Sbjct: 121 DSNSDLAM--SGTGYRVQGNEMTVDEDGVISTGSELSDINIPIGRKMEAKATSTVGYRCN 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           L    D                         ++E   +S  +    +     S  T  F 
Sbjct: 179 LDSRVDPYLPLGIPDGVKFSSEILGSEYTISVAEGEDVSDFINIRLENEADGSVETLRFS 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                 +    ++Y    E        V   + +G     G    +    +       + 
Sbjct: 239 FEGVQQSSHDESTYYPKLELVGSSGHTVNYDAAKGELSIDGTSIPMSAYMNYQAVSIDDS 298

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  L       +              +   +    +     +E    +P      +
Sbjct: 299 TGTTHTYLAEITEIGNKAQVRLWGEGKEESSGDSQVDYFQWNVLKTEDGLFDPDSTLKMT 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              D        L+   + +G                  +       + T+      +  
Sbjct: 359 TGEDSQFPDPVSLFLEIDSSGKALNFRGNVSPIIGPATSNSGVNKEGDTTVTPAYTVTST 418

Query: 410 WLEKNRSDSHDLHMKSQVVFNHIS 433
                 +D      +   + + I+
Sbjct: 419 DGTSATADITYRFQEGTTISDFIT 442


>gi|148546706|ref|YP_001266808.1| flagellar basal body FlaE domain-containing protein [Pseudomonas
           putida F1]
 gi|148510764|gb|ABQ77624.1| flagellar basal body FlaE domain protein [Pseudomonas putida F1]
          Length = 584

 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 84/302 (27%), Gaps = 4/302 (1%)

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
              + A+           D  L   S  +  +     ++D     S  T ++++   +  
Sbjct: 286 PAAQDANGDWVASGAAGTDQALGVTSPALVANKPFDPSDDSTYTRSFPTKVYDSQGNEHT 345

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            E+    T T+E     +       N GS  P   +  +    D  V             
Sbjct: 346 MEQFYRKTGTNEWTMYTLVDGRNPFNPGSTEPL--VGTIAFNSDGSVNSMTADNTGHPVG 403

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              +                    +   +       G+  ++     Y +  + +     
Sbjct: 404 TSFTVVNNTFSMIGWVPAAEDASGNWSANGAVGDAAGMKMSMASTTSYNTETARMSQSQD 463

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                + +  ++     L   + +  ++      +A       L +       W E   S
Sbjct: 464 GYATGILSNLSIDATGVLFASFSNGQSRAIGQVALASFANEQGLQQIGS--TRWTETYNS 521

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +          I  +      VNL +EL  LIK +  Y  + K I     ++QT++
Sbjct: 522 GIPGIDSPKTGTLGAIESNSLEGSNVNLTQELVDLIKAQSYYQANAKTISTESTVMQTII 581

Query: 477 EG 478
           + 
Sbjct: 582 QM 583



 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/473 (9%), Positives = 120/473 (25%), Gaps = 27/473 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ---------- 55
            FN   +    A++Q      NI N +   +                +            
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKASRAEFADVYAGANRLGVGKNQVGNGVR 61

Query: 56  -RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS---- 110
             + ++      ++   +A+      Q F  L +  S       S         ++    
Sbjct: 62  LAAISQQFTQGDVNTTGNALDMGIQGQGFFVLSDNGSKVYTRAGSFQPSKDNFVETSDGL 121

Query: 111 -LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            L+ Y  + +   + K+ + + +            +     + +         +      
Sbjct: 122 RLQGYMADATGK-IQKSGLTDLKIDTSALQPKPTSLIDQGINLNSSAASIPFQVYDNTKP 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
             +        +  +  +   +   D +  ++ +    +         +V   +      
Sbjct: 181 PALAAFDPADPSTYQRSSTSTVLDADGVEHEVQQYYRKTDTNEWTMYTLVDGRNPFDPAS 240

Query: 230 TVPRDINFEKMNSYTVTS---ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           T P        +  T++S   ++  +        SN   A+      A     D V    
Sbjct: 241 TTPLAGTINYNSDGTISSMLADTTGVPSGASFTVSNGAFAMTGWVPAAQDANGDWVASGA 300

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                 +    + S +       +  +      +   K  D++  +   E          
Sbjct: 301 AGTDQALG---VTSPALVANKPFDPSDDSTYTRSFPTKVYDSQGNEHTMEQFYRKTGTNE 357

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
              +    G            +       +   +S   +    P   + T+ T++    +
Sbjct: 358 WTMYTLVDGRNPFNPGSTEPLVGTIAFNSDGSVNSMTADNTGHP---VGTSFTVVNNTFS 414

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
            IGW+     D+      +  V +      S     +   E + + + +  Y 
Sbjct: 415 MIGWVP-AAEDASGNWSANGAVGDAAGMKMSMASTTSYNTETARMSQSQDGYA 466


>gi|169831903|ref|YP_001717885.1| hypothetical protein Daud_1757 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638747|gb|ACA60253.1| protein of unknown function DUF1078 domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 310

 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 82/312 (26%), Gaps = 12/312 (3%)

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +         + +  +    + I  ++T       +         +  T    I  +
Sbjct: 1   MIRSLTSGVSGLRNHQVRMDVIANNIANVNTTAFKAGRVNFQEILSQNIRGTSASTIGVD 60

Query: 239 KMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            +N   +    +   ID   G    +     +                     +      
Sbjct: 61  SINPAQIGLGMSVQSIDILFGQGALTTTYRVLDMAIDGNGFFRLGKYSDEGIIEYYYTRD 120

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                 ++   ++    +V G+         ++ +   ++ T  V   +      L D  
Sbjct: 121 GAFYVDNDGYLVSSGGLHVLGVGQNGASWLTEDAIKTVVNRTYSVEAGFSGERIRLFDPS 180

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            V      N+  L   P+ +  + +          +        L     N    +    
Sbjct: 181 GVDPGLENNLTTLRIDPNGLI-FVNGRTDRAALILIDNYGNPENLTRLGGNLY-EVPLRG 238

Query: 416 SDSHDL-------HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            ++             S      +         V+L  E + +I  ++ +  + ++I  +
Sbjct: 239 QNAEPTPYNEGWGVPDSGGGQGRLVSGALEMSNVDLSAEFANMITTQRGFQANARVITVS 298

Query: 469 DKMLQTLLEGVK 480
           D+MLQ L+   +
Sbjct: 299 DEMLQELINLKR 310



 Score = 70.1 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 47/225 (20%), Gaps = 30/225 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51
           ++       +   N   +   I  NI N +   +                  + S   V 
Sbjct: 1   MIRSLTSGVSGLRNHQVRMDVIANNIANVNTTAFKAGRVNFQEILSQNIRGTSASTIGVD 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                     ++ +S +       L      +        F  L +   +D+        
Sbjct: 61  SINPAQIGLGMSVQSIDILFGQGALTTTYRVLDMAIDGNGFFRLGK--YSDEGIIEYYYT 118

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNA--------EEVVQNFNTSAREVQKIRADADK 154
                    + Y  +     +     + A        + VV    +        R     
Sbjct: 119 RDGAFYVDNDGYLVSSGGLHVLGVGQNGASWLTEDAIKTVVNRTYSVEAGFSGERIRLFD 178

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
              ++        +     N  I     +   A   +D       
Sbjct: 179 PSGVDPGLENNLTTLRIDPNGLIFVNGRTDRAALILIDNYGNPEN 223


>gi|52785608|ref|YP_091437.1| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC
           14580]
 gi|163119437|ref|YP_079022.2| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC
           14580]
 gi|319645990|ref|ZP_08000220.1| FlgE protein [Bacillus sp. BT1B_CT2]
 gi|52348110|gb|AAU40744.1| FlgE [Bacillus licheniformis ATCC 14580]
 gi|145902944|gb|AAU23384.2| flagellar hook protein [Bacillus licheniformis ATCC 14580]
 gi|317391740|gb|EFV72537.1| FlgE protein [Bacillus sp. BT1B_CT2]
          Length = 263

 Score = 88.9 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           ++        +    +           +  G +    +                      
Sbjct: 77  DIIHTNAAPSTTGRQLDMTITGDGYFRVGSGDEVYYTRSGNFYRSDEGDLVTVDGLFVLT 136

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            + G ++        ++A    +     ++ N+      +A  +    L +   N   + 
Sbjct: 137 ANNGRINIPQDAQSFSIAPDGTVSYVDQNNENQTAGQISLATFSNTSGLSKAGDNL--YR 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S    + +  +     I  S      V+L EE S +I  ++ +  + K+I  +D++
Sbjct: 195 ETLSSGDPQVVVPGEGGSGKIQTSALEMSNVDLSEEFSEMIIAQRGFQSNAKIITTSDEI 254

Query: 472 LQTLLEGVK 480
           LQ L+   +
Sbjct: 255 LQELVNLKR 263



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 49/241 (20%), Gaps = 20/241 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49
           +L       +   N   +   +  NI N +   Y +                  + +   
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVVANNISNINTAGYKKSRVTFKDIVSQQLSGASSSTANRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +    +   ++A              +        +            
Sbjct: 61  SVNGQQVGLGATIGSIDIIHTNAAPSTTGRQLDMTITGDGYFRVGSGDEVYYTRSGNFYR 120

Query: 110 SLESYSKNLSEDILGK------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           S E     +    +         +  +A+      + +   V +   +         +  
Sbjct: 121 SDEGDLVTVDGLFVLTANNGRINIPQDAQSFSIAPDGTVSYVDQNNENQTAGQISLATFS 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                     N   +   +S         +      + S +   +  +      ++    
Sbjct: 181 NTSGLSKAGDNLY-RETLSSGDPQVVVPGEGGSGKIQTSALEMSNVDLSEEFSEMIIAQR 239

Query: 224 G 224
           G
Sbjct: 240 G 240


>gi|301644496|ref|ZP_07244491.1| flagellar hook-associated protein FlgK domain protein [Escherichia
           coli MS 146-1]
 gi|301077160|gb|EFK91966.1| flagellar hook-associated protein FlgK domain protein [Escherichia
           coli MS 146-1]
          Length = 272

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 7/269 (2%)

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
             R+ +      + G              K             F  G             
Sbjct: 10  TFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGD 69

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
             I A +    +V+        +  +  +   +         +    +            
Sbjct: 70  VAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGT 129

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                S T+        N   L    +            +          +      +  
Sbjct: 130 PAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDN-------RNGQALLDLQS 182

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
               +    +  +   + +  +    +           V   +S    +  GVNL EE  
Sbjct: 183 NSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYG 242

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L + +Q Y  + +++   + +   L+  
Sbjct: 243 NLQRFQQYYLANAQVLQTANAIFDALINI 271


>gi|74101658|gb|AAZ99748.1| FlgEL [Aeromonas hydrophila]
          Length = 397

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/473 (9%), Positives = 115/473 (24%), Gaps = 78/473 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+   +     +Q+ + I  N+ NA                   +    +S        
Sbjct: 2   SFSIGLSGLRAVNQELSVISNNVANA-------------------STAGFKSSRAEFAAI 42

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                +  +    + Q+F+   ++              ++           +  +    +
Sbjct: 43  YGGGQAGGVEMNNVSQNFDRNGDV------TRTGRGLDLAISGSGFFVLKDSNGQTSYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +   +        S   +Q    +   E++  +            V D      +   
Sbjct: 97  AGMFQRDPNNYLTTASGTRLQGYTTNDAGELQSGV------------VGDIQVKAGSLPA 144

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A D L+    L    S I   +             S  + +++++  +    +    T 
Sbjct: 145 KASDKLEFVANLKADASVIDQTAHPFDPAKSDSFSYSQSSKVYDSLGVEHTVTQYFVKTA 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +     +      + +  +                                        
Sbjct: 205 DNTWQVNYAFNGTKTGSPVTME-------------------------------------- 226

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               N                       +S  +    QY S+ +  R+  +         
Sbjct: 227 -FNTNGTLKSPTTSPVLNLTPPGAEKIALSVDVARVSQYASDFNATRNQSNGYAAGDLTG 285

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   + +  +       +A       L++   N+  W +   S    L    
Sbjct: 286 VKVDADGGVYATFTNGQSLLQGQVVMANFTNPNGLMQ--TNNTTWQQSFSSGQPVLGAPG 343

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 ++     +  V+L  EL  L+  +++Y  + K I   DKM Q L   
Sbjct: 344 TGTMGSLTAGAYESSNVDLTGELVSLMTSQRNYQANAKTISSADKMTQVLFNS 396


>gi|213421023|ref|ZP_03354089.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 301

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 58/239 (24%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
              Y         F           S      +    ++ DS      +           
Sbjct: 62  TKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQ 121

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                D     +       +      +        +++  + P   +         + ++
Sbjct: 122 VTRTADNTTFTATKDADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAE 181

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             + +   L    D  +    +            +  N T  +     +  +    S   
Sbjct: 182 IAMASESKLDPDVDTGDSDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLK 241

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   V   + +   +  GVNL EE   L + +Q Y  + +++   + +   LL  
Sbjct: 242 TSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQTANALFDALLNI 300


>gi|148254603|ref|YP_001239188.1| putative flagellar hook-associated protein FlgK [Bradyrhizobium sp.
           BTAi1]
 gi|146406776|gb|ABQ35282.1| putative flagellar hook-associated protein 1 (HAP1, FlgK protein)
           [Bradyrhizobium sp. BTAi1]
          Length = 585

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 158/424 (37%), Gaps = 17/424 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQ 55
           MSL      A +  +    Q +    NI NAD K Y  +               V++   
Sbjct: 1   MSLDIARLVAFSGISATELQISVASSNISNADTKGYTEKSANQVATVTGGVGTGVSITGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS------ADDHYNNSPTHYISKLRD 109
            S    +  K L   +S +G      S+    + +              S  + ++ L  
Sbjct: 61  SSNVDKLLLKSLIGANSELGAADTTNSYLEQLQQLFGSASTSGTSTTGTSLANALASLES 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +L S + + S   L    +   ++      +++  VQ +RA++DK+I   + ++   L +
Sbjct: 121 ALSSLASSPSSVSLQSAAVSALDDFASQLRSTSSGVQSLRANSDKDIASSVKSVNDDLQQ 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +  +N  I+   A+     D  DQR+  LQ +S  + +S    +N D+ VYTS G  L +
Sbjct: 181 IADLNVQIRKMAAAGQSTADLEDQRNSALQDLSSYMNVSYYTASNGDLQVYTSSGRALVD 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +    +++    + + +S  +     G++V   +  S +  GKI AL+ +RD  +P  Q 
Sbjct: 241 SSAHTLSYTASANVSASSSYSSGGFSGIMVDGVDVTSQITSGKIGALITLRDQTLPATQT 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           QLD++A  L  + +     A        L                ++ +  V        
Sbjct: 301 QLDQLATELKSALNAITNGASAVPPPTSL-----TGSASVSSTTALAASGTVRIAVADQS 355

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L     +       V +L    + I+    S + +      A  ++N   +    +S+
Sbjct: 356 GNLVSYKDLDLSSYATVGDLVTALNGISGVSASLDSSGYLSISATSSSNGIAINDMTSSV 415

Query: 409 GWLE 412
           G   
Sbjct: 416 GGGG 419



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/434 (10%), Positives = 113/434 (26%), Gaps = 3/434 (0%)

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +  V + R+ +       + + +  + Q   L                     +   + 
Sbjct: 152 TSSGVQSLRANSDKDIASSVKSVNDDLQQIADLNVQIRKMAAAGQSTADLEDQRNSALQD 211

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             S  + S   + +   +    +   +V +   +          A         +     
Sbjct: 212 LSSYMNVSYYTASNGDLQVYTSSGRALVDSSAHTLSYTASANVSASSSYSSGGFSGIMVD 271

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                         A        L      L +++  +  +     N    V      T 
Sbjct: 272 GVDVTSQITSGKIGALITLRDQTLPATQTQLDQLATELKSALNAITNGASAVPPPTSLTG 331

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
             +V          +  +        +           A     + AL  I      +  
Sbjct: 332 SASVSSTTALAASGTVRIAVADQSGNLVSYKDLDLSSYATVGDLVTALNGISGVSASLDS 391

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +    ++     +    + +  +               +        +    +       
Sbjct: 392 SGYLSISATSSSNGIAINDMTSSVGGGGFSEYFGMNDLVTGTGAANFAVDSSILSGAAGL 451

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN-TNVTLLEYARN 406
           P+   D  + +     +    +G   +IN   D    +  F    G++ T  +  +YA  
Sbjct: 452 PTGTLD--NSATLTTGSQVLTSGSATIINQLYDKLTGSTSFSSAGGLSATTGSFADYAAA 509

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +  +    + +   +          + S S+  GVN+ EE + +  ++  Y  +++LI 
Sbjct: 510 IVANVASKATQASSNYTAKSTAQASYASSLSSQSGVNIDEETARVSSLQNKYAAASQLIS 569

Query: 467 FTDKMLQTLLEGVK 480
             + M  +LL  V+
Sbjct: 570 VVNSMFSSLLTAVQ 583


>gi|224373467|ref|YP_002607839.1| flagellar hook protein FlgE [Nautilia profundicola AmH]
 gi|223588607|gb|ACM92343.1| flagellar hook protein FlgE [Nautilia profundicola AmH]
          Length = 853

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/371 (10%), Positives = 93/371 (25%), Gaps = 11/371 (2%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + + +    T + N + + +   +     + ++ D       +I +L          +  
Sbjct: 487 DSAGNAASTTALQNLQNIFEPLGSGTSTNEFLKNDV--YYFHDIQDLAYIWQIAVDDSGD 544

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEI---IGISTIVRNNNDMVVYTSDGTTLFETVPR 233
               T          D   + ++  S     I I        D  ++T   + +  +V  
Sbjct: 545 PLNSTTGNSGIVSINDDGQLTIKNTSSNSFNINIGGYPDEEKDNQLFTDAFSPINGSVAA 604

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                          ++    D +           K                 +      
Sbjct: 605 GGTAISQAMNAAVHTTSIDVFDSLGSKHTLTLHFRKTHTSENPNDPTVWKWYAEVPAPST 664

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG----ISETICVNPQYRSNPS 349
                  + + +P    +   P   I +                          + +  +
Sbjct: 665 LDQPAYGYVKFNPDGSINSYNPPSLIFNPNNGSSTGQAIQLDFGTMGKFDGITSFEAPSA 724

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                             +     +I  + +  + +     +A    N  L+        
Sbjct: 725 TSGQTQDGYPGGDLQQLVVDQTGTVIGVFTNGRSYSLAQVAIAKFVNNEGLMSEGGTLFS 784

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S    +          I  S      V+L   L+ LI +++ +  ++K I  +D
Sbjct: 785 --ASPNSGEPIIGTAGTGGRGSIQPSSLEMSNVDLSRSLTQLIVIQRGFQANSKTITTSD 842

Query: 470 KMLQTLLEGVK 480
           +ML TLL+  +
Sbjct: 843 QMLNTLLQLKQ 853



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/435 (8%), Positives = 86/435 (19%), Gaps = 20/435 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +  N           NI N +   +    T                +    
Sbjct: 1   MMRSLWSGVSGLNAHQIAMDVEANNIANVNTVGFKYSRTNFQNLLSQTVKSATAPQGDLG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L           L  S  A++ M       N      ++   D     S +  +  
Sbjct: 61  GKNSLQI--------GLGTSVSAVETMFKQGSIQNTDKNTDMAINGDGFFVVSGDGGKTY 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 D   +   NF      + +         + E   +        +         A
Sbjct: 113 RYTRAGDFTFDANGNFVDPNGYIVQGWL-----ADPETHTIDTASGVKPISIPPGLTTPA 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +           +            +T+ +  +   +Y ++G  +  T   D     +++
Sbjct: 168 NPTSKIAIKANLNSGDHITEMDGTRTTVDQTADINGLYNANGEKIQLTPDVDKITLAIDA 227

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + S+         +S   +      IK        ++      + +       S  
Sbjct: 228 NNDGTISSTEVYTFTYGTSQTDTDRKFTTIK-------DLLDEINAIIKDPTGTTPASEY 280

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +           P   I                      P   +          +    +
Sbjct: 281 QVYLNGNGQIVDPQNRIKTEDTLSSTNTILENIFKALDGPATSTESMKAVQNSFIGADDV 340

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             + N  G    +                       T +           K +  +    
Sbjct: 341 GELFNANGDAFNLEDGQGITVNINGLGETRKFIYQQTPINETEGCGTATGKYQPTNPITS 400

Query: 423 MKSQVVFNHISESYS 437
              + +      +  
Sbjct: 401 DSMEGLHWTYDSNRE 415


>gi|78776232|ref|YP_392547.1| hypothetical protein Suden_0031 [Sulfurimonas denitrificans DSM
           1251]
 gi|78496772|gb|ABB43312.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 430

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/484 (7%), Positives = 100/484 (20%), Gaps = 61/484 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRS 57
           ++  F    N   +       I  N+ N     +       +            +     
Sbjct: 2   MIQAFYTGINGIKSHQTSIDVIADNLANTSTLGFRGYTAEFSSLFEKSLSTTADINAGIG 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               +    ++     +           + +         +             E     
Sbjct: 62  LGSRVNAITMNDSVGTLQLSERSTDMAIMGDGWFGIQGEGSPLYTRDGSFTFDRERDLVT 121

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                +  T+  N                                               
Sbjct: 122 ADGYYVLGTMGKNIN-------------------------------------------NG 138

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                        + ++  L         +           +  +D   +      D   
Sbjct: 139 VLSEQLAEIPLANVSEQQKLRFPDKLTYPVEPTSEAKFFGNLGVTDNIRVISAKAIDSQS 198

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              +      +SNP    GV       +     K              +  Q  E   + 
Sbjct: 199 NTNSIRLEFKKSNPQTSPGVQWDVTATAQSSGVK------------TEYNEQTSETTYLP 246

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              +  +  +     +   +       + +    +    +         NP       + 
Sbjct: 247 DEIYDTQKGVVSFDNSGIIISNTLSTVNNNGTPVKIDLGSGFNGLISMDNPFSGSSTSNG 306

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           ++       ++     ++  + +          V     +  L     +       +   
Sbjct: 307 TQSGELQGYDINKNAQIVATFSNGMQSAIGSVAVYHFQNDKALERAGGSRFSESTNSGKP 366

Query: 418 SHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   + +    +S        V ++  L+ +I +++SY+ ++K I   D+MLQ  L
Sbjct: 367 IFFKDANGKNIVGTDLSNFKLEGSNVRMEVALTEIIVMQRSYDANSKCITTADQMLQKAL 426

Query: 477 EGVK 480
              +
Sbjct: 427 SMHR 430


>gi|149189836|ref|ZP_01868116.1| flagellar hook protein E [Vibrio shilonii AK1]
 gi|148836322|gb|EDL53279.1| flagellar hook protein E [Vibrio shilonii AK1]
          Length = 398

 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/395 (10%), Positives = 95/395 (24%), Gaps = 6/395 (1%)

Query: 89  MMSADDHYNNSPTHYISKLRDS----LESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
            +S  D  N         + ++     +      S    G          +         
Sbjct: 6   ALSGLDATNTQLNTISHNIANASTYGFKEARTEFSAVYNGMQAGGVEVASISQNFDKNGS 65

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           V       D  I      + +     T+   A  F T   +        +       S  
Sbjct: 66  VSGTGRAMDLAINGNGFFVTKDHMGQTLYTRAGVFGTDKDNYVVGNTGAKLQGYGVDSNN 125

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             ++  V +        +   T       + +          +  +P   D    S    
Sbjct: 126 NLLTGSVGDLKISTSSLAAQATDKLDFVANFDASSKIVDQTVNPFDPADPDSFNSSYTSK 185

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                G    + Q              ++      + +       +          +   
Sbjct: 186 VYDSLGNSHTVTQYFTKTADNTWEVNVQVDGGSTPAQTVPVTFNPDGTLASPTGSFNVAF 245

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                    I  ++  + Q+ +      +  +           +     +   Y +  ++
Sbjct: 246 PAAGANAMSIDISLEGSTQFGAAFGVSTNNPNGYTSGELAGVRVEDNGMVFATYTNGQSQ 305

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L +   N   W +   S +  +      V   ++        V+L
Sbjct: 306 LQGQVVLANFANPQGLAK--TNGTAWTQSYGSGAPVMGTPGSGVLGDLTPGALEGSNVDL 363

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             EL  L+  +++Y  + K I  +DK+ Q L   V
Sbjct: 364 TSELVNLMTAQRNYQANAKTISTSDKLTQALFNAV 398



 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/400 (10%), Positives = 96/400 (24%), Gaps = 22/400 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +  +  + Q  +I  NI NA    +    T  +     +        +     +
Sbjct: 2   SFDIALSGLDATNTQLNTISHNIANASTYGFKEARTEFSAVYNGMQAGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             DH   +            ++Y    +   L  
Sbjct: 59  NFDKNGSVSGTGRAMDLAINGNGFFVTKDHMGQTLYTRAGVFGTDKDNYVVGNTGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   ++       +      A    +    ++N       +    +          
Sbjct: 119 YGVDSNNNLLTGSVGDLKISTSSLAAQATDKLDFVANFDASSKIVDQTVNPFDPADPDSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN--------- 236
           ++       D L    +     +    N  ++ V    G+T  +TVP   N         
Sbjct: 179 NSSYTSKVYDSLGNSHTVTQYFTKTADNTWEVNVQVDGGSTPAQTVPVTFNPDGTLASPT 238

Query: 237 ----------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
                          S  ++ E +  F     VS+N  +    G++  +    + +V   
Sbjct: 239 GSFNVAFPAAGANAMSIDISLEGSTQFGAAFGVSTNNPNGYTSGELAGVRVEDNGMVFAT 298

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                   +  +   +  +P      N      + G                        
Sbjct: 299 YTNGQSQLQGQVVLANFANPQGLAKTNGTAWTQSYGSGAPVMGTPGSGVLGDLTPGALEG 358

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           +   L            N +  A      +    +     
Sbjct: 359 SNVDLTSELVNLMTAQRNYQANAKTISTSDKLTQALFNAV 398


>gi|323700159|ref|ZP_08112071.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132]
 gi|323460091|gb|EGB15956.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans
           ND132]
          Length = 558

 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/393 (8%), Positives = 85/393 (21%), Gaps = 6/393 (1%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
              +    +    ++ L  S    S + +          +        +T       ++ 
Sbjct: 169 FQSEPNPTTNVSIVTNLDPSAADGSTSSTNPYFAMFNNWDGSAETPLASTLYAYSTTLKV 228

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
             D      ++     ++      D +     +   + D            S     ++ 
Sbjct: 229 YDDIGTAHNLTVYYDPVTMSNAGGDTVWEFMVTCEPSADRRMLSGANGLMTSIGEAQTSA 288

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                   +  + G  L       +      +    S  +              + + K 
Sbjct: 289 SGVLMIGTLTFTTGQ-LSGMSAYTLKSNGGTNIKDLSNWSLADFSTSGFPVCTANFLGKS 347

Query: 271 KIKALLQIRDSVVP---IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                     + +       N+          +      +     N   +          
Sbjct: 348 NASTAEAAEATPLQIDFGISNKDLSSNGSGAVTIGWDGGLGNVPTNAAMVGNNISNTGYL 407

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                     +          S L    +     +    +++    +  HY +       
Sbjct: 408 ANFKDPAVSALATQSFDTGGSSTLYQSQNGYSAGILQNISVSREGVISGHYSNGQVLELY 467

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A       L     N     E   S               I  +      V++  E
Sbjct: 468 AVTLATFTNQHGLRREGGNLFT--ETLESGPALTGQAGSTGKGTIDGNALEMSNVDMATE 525

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +I  ++ +  + K+I   D ML  ++   +
Sbjct: 526 FVNMITTQRGFQANTKVITTVDSMLGEVISMKR 558



 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/459 (10%), Positives = 106/459 (23%), Gaps = 23/459 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M L A      +     S++   I  N+ N +   +                      + 
Sbjct: 1   MGLGASLFSGISGLTVHSERMTVIGNNLANVNTTGFKGAMMQFEDLASADFATVNGVGQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V   +   +         + A            +     +    +          R 
Sbjct: 61  GRGVRVSTIYSDWGQGAFETSTEATDMAISGDGLFVV-----SPLGEDEKYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDN----AEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
             + Y  +    +L    I+           +   +A   + I    +  +E   S    
Sbjct: 116 DSDGYLVDPHGYVLQGWEIERSTTTVTTTTSSTTETANSARIIGTPTNIRMENFQSEPNP 175

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
             +   V N        S    + +    +      +E    ST+   +  + VY   GT
Sbjct: 176 TTNVSIVTNLDPSAADGSTSSTNPYFAMFNNW-DGSAETPLASTLYAYSTTLKVYDDIGT 234

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
               TV  D             E               G+      I         V+ I
Sbjct: 235 AHNLTVYYDPVTMSNAGGDTVWEFMVTCEPSADRRMLSGANGLMTSIGEAQTSASGVLMI 294

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD-LDNKLCQGISETICVNPQY 344
                       + +++ K     N +++    +AD             + ++     + 
Sbjct: 295 GTLTFTTGQLSGMSAYTLKSNGGTNIKDLSNWSLADFSTSGFPVCTANFLGKSNASTAEA 354

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                   D G  +K    N                  N   + + ++         + A
Sbjct: 355 AEATPLQIDFGISNKDLSSNGSGAVTIGWDGGLGNVPTNAAMVGNNISNTGYLANFKDPA 414

Query: 405 RNSIGWLEKNRSDSHDLHMKSQV-VFNHISESYSNTVGV 442
            +++     +   S  L+          +     +  GV
Sbjct: 415 VSALATQSFDTGGSSTLYQSQNGYSAGILQNISVSREGV 453


>gi|195953201|ref|YP_002121491.1| protein of unknown function DUF1078 domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932813|gb|ACG57513.1| protein of unknown function DUF1078 domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 831

 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 142/431 (32%), Gaps = 8/431 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNM 62
              ++   N  N   Q      +NI NA N NY +   +   + P  +++   +      
Sbjct: 3   FGSYDLVTNALNIFKQAIDITSQNITNASNSNYAQEVPIIQDTYPIGISMQDIKRIQNLY 62

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           F ++L   S+++        +    + +      N+S T Y      +      + S   
Sbjct: 63  FFQLLQNKSASLDYFNTRLQYNKQVQNIFNIVGPNSSSTSYDDAFFSAFTQLFTDTSNVG 122

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V+  A   VQN N++A  +  +     K     ++ +   +  L+ +N  I    A
Sbjct: 123 YQNQVLTTASNFVQNLNSNASTINNLAYQVPKSSLQYLNQINTLIKNLSSLNQQITTSYA 182

Query: 183 ----SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
               + HD  + LDQRD  + ++S++I ++    +   + +  + G TL +         
Sbjct: 183 LTYSNAHDYKELLDQRDAYISQLSKLISVNVQEDSIGRVHISINGGFTLVDGTNYWKLAL 242

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             +  +       +  +   +  +  + V  G++KA++         ++ + D +A   I
Sbjct: 243 GGSGNSPYQTIEWLNDNNQAI--DITNYVQGGELKAMIDFSYD-ANNYKIEQDNVAANAI 299

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +         N   V  L   D       +        I       S+        +  
Sbjct: 300 MNTKIPVQSGSNYYLVQNLTNTDSPIGNQGETWNFPPNHISSTAAPLSSLGVSNGSLTFY 359

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +          +    +S + + +F+    ++ +         +      + ++ 
Sbjct: 360 TGTTPSYTISNYGALNLVQLSNSIDASGMFEANISLDPSGNYYLQITPTYSNTAGSLTNV 419

Query: 419 HDLHMKSQVVF 429
           +++   S  + 
Sbjct: 420 YNIVDSSSNIV 430



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/407 (11%), Positives = 122/407 (29%), Gaps = 2/407 (0%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
                 +  S      ++S  D+ ++     ++    SL+     ++     +     A 
Sbjct: 424 DSSSNIVFNSGSGPVGVLSFVDNSSSGTYASLNYTDMSLDQIVNTINNSPTLQ-GKYYAN 482

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
            V   F      +        +   L   N    L  +T  N ++               
Sbjct: 483 IVSSPFVDMPIGLSSSTDTISQTGVLTFRNNTTALFSITYTNQSLVQIANELSQIPSATL 542

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
               ++++   +  +   ++N N+  +  S  +          + ++       S++   
Sbjct: 543 FSASIVKEQDGLYHLRIQIKNPNEYNIVDSGSSFTSLYSLHIASLDQSKYGIQDSKNTYT 602

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
           F   V+ ++   S+   G+   L     +V     +   + +   + S  + +P      
Sbjct: 603 FSKNVISNTVSLSSYGIGQNATLTFYNGNVALYSISNYGQYSLNSLTSLIDSNPALLGLF 662

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
           +   +   DG   L        + T+  +              S       +  +++  P
Sbjct: 663 SASVVSNPDGTYSLAISSSNPSNYTLTDSSSNFLMGGG-NIYKSEMVFEGIDASSISVNP 721

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            L     +    +         +   +     +  IG +    +     +     + N I
Sbjct: 722 SLGAILQNVDPNSASNFSYYSNSWWASSKSLYQTLIGSVASTVNILQTSYSSMSSLVNSI 781

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           S   +   GV+L ++   L  ++Q Y  S  ++   + ++QT +  +
Sbjct: 782 SSQVAQVQGVSLDQQYITLQNLQQDYQASASIVGILNNLMQTTINMI 828


>gi|303326942|ref|ZP_07357384.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3]
 gi|302862930|gb|EFL85862.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3]
          Length = 817

 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/414 (9%), Positives = 99/414 (23%), Gaps = 14/414 (3%)

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
              Q +    ++   +           + ++        +   + LG +           
Sbjct: 407 SQAQKYIMELDLGLKNIGSPAWANPTATTIKTDALGNPVDAGGNALGVSKYGYYNLATGF 466

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
           +   A     +  D        +S    + +     N  + +    K             
Sbjct: 467 YGQDAAGHDLLADDKGFYYRDPVSGDNIYGTITVGGNQDVSYDDTIKGYYFTDTTVTPNA 526

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
                 + G  T     +D      +GT         +  +   +      +  +  D  
Sbjct: 527 KCYDVTVDGGGTTHPAYSDADGSYYNGTVPVAGGGAAVPGKIYGTIDDGGVTRLVQHDAT 586

Query: 258 V-----------VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                         +     +   K+K    +            +  A  L    ++  P
Sbjct: 587 GYFYIDGADARQAVTGTFDKIATSKVKPDTYVAIDNTTRVAPDYETKANSLDSLKTQLVP 646

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
               +E  P              +     +        +++ +        +   L +V+
Sbjct: 647 DGVTAEGNPKYKAVVNFATNAASMTTTERQDGASAANSKTSVTQNATQDGYASGTLSDVR 706

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     +   Y +          +     N  L     N       N S    + +   
Sbjct: 707 -IDTSGIIYGVYSNGTTLPLYQITMYDFQNNQGLWREGGNLFS--STNDSGEPRIGVAGD 763

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             F            V++  E   +I  ++ +  ++K I   D ML+T++   +
Sbjct: 764 NGFGTTKAYNIEQSNVDMSREFVQMITTQRGFQANSKGITTVDTMLETVIGMKR 817



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/413 (6%), Positives = 81/413 (19%), Gaps = 26/413 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQR 56
           M L A    + +       +   +  NI N     +  +          S  + +  TQ 
Sbjct: 1   MGLSASMWTSVSGLLAHGNKMNLVGNNIANVSTIGFKSQRMDFNDYLYMSGSSASGPTQI 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--DHYNNSPTHYISKLRDSLESY 114
               + +  +      A+                        +              E  
Sbjct: 61  GAGVSTYAVLGDYSQGALETTNSGTDLAIDGNGYFGVRKTGSDQKYYTRAGDFFFDKERK 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N    ++    ++N + +   F++ A  +    +     +           S      
Sbjct: 121 LVNPEGMVVQGWKVENDKALT--FSSGATNLGTGTSSESSYVGSGSPTDIVLSSWNLPPQ 178

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                        +   D+       ++ +  +              +    + +     
Sbjct: 179 QTTNVSFTMGLTNNGEGDKTTSASSPLTALFDL-----------WDGTSNPPIAKNAFSA 227

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
            +   +      +    ++ D V  S    +      I+ L          +      + 
Sbjct: 228 KSEINVYDEGGNAHQLSVYYDQVATSKEGTNGSTAYTIEGLPA-------GYTVYEYLVT 280

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                          +              D         +  +       +    L + 
Sbjct: 281 IPPSEDNRSFGGEGYDEATNTWTKDPTKFYDDPTNGTNKQAGVLMSGQLIFNASGQLVNQ 340

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +            Y    +            + +     N T    A + 
Sbjct: 341 TAYTFGATGTPAANDQYAGSPDSKESWQPTKLSSNGLPVFTANFTGQPLANSV 393


>gi|237817502|ref|ZP_04596493.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A]
 gi|237787337|gb|EEP61554.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A]
          Length = 456

 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/425 (9%), Positives = 106/425 (24%), Gaps = 8/425 (1%)

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +  K     S   G     Q        M        +             + +  + 
Sbjct: 36  DGLIFKRFRTRSCFAGNTLTCQELPMSLYGMMRTGVSGMNAQANRLSTVADNIANASTVG 95

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                                S   +  +R     +  +  ++    L+        ++ 
Sbjct: 96  YKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQG 155

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PRDI 235
              S +         D     ++           +      T  G  +        P + 
Sbjct: 156 PGGSTYLTRAGSFVPDKNGDLVNSAGYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEG 215

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +     +  + S        G    ++  S   KG+   L                 +  
Sbjct: 216 STAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNVSVKN 273

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G       +  +      +   +   +L     Q ++  +  + Q   + +  +   
Sbjct: 274 AADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVI 333

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +          ++     ++  Y +   K     P+A + +   +   + N   +L    
Sbjct: 334 NGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FLPSAE 391

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    L          I          ++ +EL+ +I+ ++SY  ++K+     +++  L
Sbjct: 392 SGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVL 451

Query: 476 LEGVK 480
           +   +
Sbjct: 452 VNLKR 456



 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 61  MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 120

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 121 LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 180

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 181 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 240

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 241 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 300

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 301 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 360

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 361 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 420

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 421 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 453


>gi|291334314|gb|ADD93975.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S09-C247]
          Length = 449

 Score = 88.2 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/417 (8%), Positives = 107/417 (25%), Gaps = 6/417 (1%)

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            + + S+             L +  S+      + T+   + +     ++ N       +
Sbjct: 33  NISSGSTGEALAGGSVVGVDLAQNASSVAVGRYNLTNLGGRDQTDTAEFATNKIGKGANQ 92

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            +    E +      +    +       + +                + + +    ++  
Sbjct: 93  IMGFPREGIEGYRPPTGLVSKPAVVVGLEGLMDMTQPFTITTLANENIFNVVVGGVSASI 152

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +   + D L   + E I       +   +         +   +          +   
Sbjct: 153 AIPEGNYKGDTLAVALEERINSMKNPISGQSVGGVDVKYDAVANNLTFTTATTGEGNTLA 212

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            + +    +  + +   + + V +         R   +      +      +        
Sbjct: 213 INGALKFGLKDIPLGLGETTMVRQPVQATDELGRPLFISPAGEIVANNQDFVDNMVENFY 272

Query: 306 PIAGNSENVPGLFIADGIKDLD----NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           P+  +   +        +  +           ++       Q     S            
Sbjct: 273 PLYLDEGELTFDRDGQIVSPITDVKYAGGLTELTLDFSTATQLDQPFSAREVTQDGFSAG 332

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +  Y ++   Y +  N       +A   +   L +   +   ++    S   +L
Sbjct: 333 RLTNLEIDTYGNVQAGYSNGQNVVLGKIMLASFASESGLKQIGNS--TFIATAASGDPEL 390

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              ++  F  I         V++ EEL  LI  +++Y  + K I  +  M QT++  
Sbjct: 391 GEGAEDGFGQILSGSIERSNVDITEELVNLITSQRNYQAAAKAIETSTSMTQTIINI 447


>gi|16125154|ref|NP_419718.1| flagellar hook protein [Caulobacter crescentus CB15]
 gi|221233884|ref|YP_002516320.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000]
 gi|6226612|sp|P35806|FLGE_CAUCR RecName: Full=Flagellar hook protein flgE
 gi|3493243|gb|AAC33329.1| flagellar hook protein [Caulobacter crescentus CB15]
 gi|13422168|gb|AAK22886.1| flagellar hook protein [Caulobacter crescentus CB15]
 gi|220963056|gb|ACL94412.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000]
          Length = 591

 Score = 87.8 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/411 (9%), Positives = 101/411 (24%), Gaps = 9/411 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------TVVT 54
           MS+ +      +     S   A+I  NI N +   + R  +  +    +       +   
Sbjct: 1   MSINSAMLAGVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTSGNKNQTYSAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +++      +     + +S +        F    E        +          +    
Sbjct: 61  VKAQTHQFISQQGLTQSTTSNLDISISGAGFFVTTEKPENLTATDTRSFTRAGSFQLDNL 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y +N +   L   + D    ++    +   ++  I   +      + + +    +  + 
Sbjct: 121 GYLRNDAGLYLQGWLADPVSGLITPDPSDLMQLASINVGSVGGTAEKTTRVGVNANLRSE 180

Query: 173 VNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
              A           +    +  D      +  +  S+    N                V
Sbjct: 181 QPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGNNEYLVDIKENGV 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                    ++ T    S+ I   G    +   +          + + D  +       D
Sbjct: 241 IVATGKVAYDAATNELVSSTIDYKGASPVTGSMTTTRINAAGTTVNLADLGIVNASGADD 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                          ++  +++       D    +     +G   T+ ++      P+  
Sbjct: 301 AEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPLSDSKGGQRTVTLSMLKGPGPNQW 360

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                     L N  N      +I    D   KN          T +T+  
Sbjct: 361 YAELRAKPGDLANNGNGQISTGIIEFTTDGKLKNTGSLFGTTSPTAITIKS 411



 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/443 (9%), Positives = 101/443 (22%), Gaps = 7/443 (1%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       T     +   +  L +                     +  D   NS  
Sbjct: 152 QLASINVGSVGGTAEKTTRVGVNANLRSEQPVAAAVSYKVGTAGSPSKTNVVDSATNSHN 211

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
           + +      + +     +E ++            +    +A           K       
Sbjct: 212 YDVVYSSTGIANPVSGNNEYLVDIKENGVIVATGKVAYDAATNELVSSTIDYKGASPVTG 271

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
           ++             +           D  +     L   S          N+  +    
Sbjct: 272 SMTTTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDF 331

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
                L ++                       +          +   +     +    D 
Sbjct: 332 EVQIPLSDSKGGQRTVTLSMLKGPGPNQWYAELRAKP-GDLANNGNGQISTGIIEFTTDG 390

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +    +     +   I   S        +             D      Q +   +   
Sbjct: 391 KLKNTGSLFGTTSPTAITIKSSGYIAPTVTPPAVQPPTPPTWADALGIDEQEVQIDLASA 450

Query: 342 ----PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                QY S         + +         +     +   + +   +      +A  +  
Sbjct: 451 AGGLTQYNSQSVVQSVNTNGTAFGNLTNIEIDEGGYVSAIFDNGVTRRIAQVAIATFSNP 510

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L     N   +   N S ++ L   SQ     ++ S      V+L +E + LI  +++
Sbjct: 511 NGLKGV--NGNAYRVTNESGTYSLKAPSQGGAGALAPSTLEASTVDLSQEFTGLITTQRA 568

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y+ S+K+I   D+ML+ LL   +
Sbjct: 569 YSASSKIITTADQMLEELLNIKR 591


>gi|332981440|ref|YP_004462881.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON]
 gi|332699118|gb|AEE96059.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON]
          Length = 265

 Score = 87.8 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 70/241 (29%), Gaps = 10/241 (4%)

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           N   ++ V   S++ +               +V+     Q   +   +        P   
Sbjct: 25  NIANVNTVGFKSSRVTFQDVFNQTIKTGSAPNVLGGTNPQQIGLGAAVGAIDVLHTPGGI 84

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG----------SVSK 359
              + P     +G              T   N    ++ + +   G           +  
Sbjct: 85  ERTDNPLDLAINGDGFFVVNDGTADYYTRAGNFHLDADGNLVTPDGMYVQTAGGGNIIID 144

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
             L+    +     +     D          +A       L +  +N       +   + 
Sbjct: 145 PTLYVSIVIDKTGQISGIQADGTVDTLDIVGLAKFVNPGGLEKIGQNMYRETISSGPPAT 204

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +    Q    +++        V+L  EL+ +I  ++ +  ++++I  +D+MLQ L+   
Sbjct: 205 GIVQPGQDGTGYLTPGALEMSNVDLSRELTDMIITQRGFQANSRVITTSDEMLQELVNLK 264

Query: 480 K 480
           +
Sbjct: 265 R 265



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 7/177 (3%), Positives = 29/177 (16%), Gaps = 12/177 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++       +       +   I  NI N +   +                          
Sbjct: 1   MMRSMFSGVSGLRAHQTRMDVIGNNIANVNTVGFKSSRVTFQDVFNQTIKTGSAPNVLGG 60

Query: 63  FDKVLHAHSSAIGQ------------QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +       +A+G                        +     +                
Sbjct: 61  TNPQQIGLGAAVGAIDVLHTPGGIERTDNPLDLAINGDGFFVVNDGTADYYTRAGNFHLD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
            +          +      N       + +   +     +    +  ++  ++    
Sbjct: 121 ADGNLVTPDGMYVQTAGGGNIIIDPTLYVSIVIDKTGQISGIQADGTVDTLDIVGLA 177


>gi|224534079|ref|ZP_03674662.1| flagellar hook-associated protein 1 [Borrelia burgdorferi CA-11.2a]
 gi|224512778|gb|EEF83146.1| flagellar hook-associated protein 1 [Borrelia burgdorferi CA-11.2a]
          Length = 151

 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 50/130 (38%)

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            + D        + +          I     +   +   +    I  N+TL +Y  N+  
Sbjct: 20  KVADIIDSDPSKIASGIKNPTNEISIGDNQAALRISSFGNSQIMIGKNLTLNDYFANTAS 79

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            +      S         +   +++   +  GVN  EEL+ +I+ +Q++  ++K I  + 
Sbjct: 80  NIAIKGQISEITKESQSQILKDLTDLRMSISGVNKDEELANMIEFQQAFIAASKFITVSV 139

Query: 470 KMLQTLLEGV 479
           +++ T++  +
Sbjct: 140 ELIDTVINKM 149


>gi|254255087|ref|ZP_04948404.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158]
 gi|124899732|gb|EAY71575.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158]
          Length = 419

 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/473 (9%), Positives = 105/473 (22%), Gaps = 86/473 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +     + Q   I +NI NA    Y       +      T       +     +
Sbjct: 30  SFNIALSGIKAINGQLGEISQNIANAGTYGYKAGRANFSAFYLGSTPGGVMVGS---TSQ 86

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            ++   S +     + +           D         + +          +     +  
Sbjct: 87  AMNVAGSLVSTGSGMDAALPGNGFFVTRDANGALVYSRVGRFGTDQHGNVIDYMGRKVQG 146

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                  ++                                                   
Sbjct: 147 YAAAGGGQIGD-----------------------------------------LSIPGGGI 165

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            A                ++  +     ++          T+ +++ R+    +      
Sbjct: 166 PAKASESVAYAGNMSADWVVPANGTFDKDDPQSYNRMSSQTVLDSLGREHVVNQYFVKGP 225

Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
            ++      +DG  V +       +    AL+     V                    + 
Sbjct: 226 DNQVTVHYTMDGEAVGAPVEMTFDEH--GALISPTGKVALDL-----GTPAGAAALAVQI 278

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           D                           G+  T   + + + +       G ++     N
Sbjct: 279 DYSGTTMFGGEATTTRRSADGHKPGTVTGVVLTEDGSLEVQYSNGEKSIAGQLAVATFQN 338

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              L        H   +  +       AG                               
Sbjct: 339 ADGLVSVSGTGWHASAAAGEALYGVAGAGPID---------------------------- 370

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            ++V   + +S        L EEL  L+  +Q+Y  ++K++   ++M++TL++
Sbjct: 371 -KLVVGALEQSNVE-----LTEELVNLMSAQQNYQANSKVLSTENEMVRTLMQ 417


>gi|56964026|ref|YP_175757.1| flagellar basal body rod protein FlgG [Bacillus clausii KSM-K16]
 gi|56910269|dbj|BAD64796.1| flagellar hook protein FlgE [Bacillus clausii KSM-K16]
          Length = 267

 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 2/201 (0%)

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
              +    + +                I G+      +          N         + 
Sbjct: 69  SGSMVGAIDTVHTGGGNQYTGRELDLAINGDGYFAVQIGDDTFYTRAGNIYFDNEGNVVN 128

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            +  Y   P   R     +         +    ++I       N   +   +A       
Sbjct: 129 SSGAYLLGPDGNRLQIDPALLDDMESTTVNKQGEIIVSIQGQENPVTLQLGIANFANPEG 188

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     +         S   +L +        I   Y     V+L +E S +I  ++ + 
Sbjct: 189 LNSAGGSLFT--ATPASGPANLVIPGTQGTGDIQSGYLEMSNVDLADEFSEMIVAQRGFQ 246

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++++I  +D++LQ L+   +
Sbjct: 247 ANSRIITTSDEILQELVNLKR 267



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/195 (6%), Positives = 36/195 (18%), Gaps = 13/195 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           ++       +       +   +  NI N +   + +   M                    
Sbjct: 1   MIRSMYSGISGMKGFQTKLDVVGNNIANVNTHGFKKGRVMFQDMVSQQVQGPMAATPNRG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +                         +   A    +++       +  
Sbjct: 61  GVNSKQIGSGSMVGAIDTVHTGGGNQYTGRELDLAINGDGYFAVQIGDDTFYTRAGNIYF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E    N S   L     +  +      +         + +    I+ + + +   L  
Sbjct: 121 DNEGNVVNSSGAYLLGPDGNRLQIDPALLDDMESTTVNKQGEIIVSIQGQENPVTLQLGI 180

Query: 170 LTVVNDAIKFKTASK 184
               N          
Sbjct: 181 ANFANPEGLNSAGGS 195


>gi|328958276|ref|YP_004375662.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4]
 gi|328674600|gb|AEB30646.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4]
          Length = 289

 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/275 (8%), Positives = 70/275 (25%), Gaps = 6/275 (2%)

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
              +     +   + T       R  +     + +  +  N   +   V   +  + +  
Sbjct: 17  TKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQAGINAQQVGLGVQVGSIDTVMTG 76

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV----PGLFIADGIKD 325
           G +++  +  D  +    +    +       ++    +  +         GL +    + 
Sbjct: 77  GSLQSTGRALDFGIENGDSSFFTVTDGTNTFYTRDGGLYADPSGNLVTSSGLQVQGYSQG 136

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                                N                   ++     ++  Y    +  
Sbjct: 137 APATNDAAFVPGSLGTTMEPINIPQTIPNPDGGDALELQSYSVDNDGFIVGSYSGGKSMV 196

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +   +    L +   N         S            +  +   +     V+L 
Sbjct: 197 LGRVGLTSFSNPDGLQKNGGNLYS--ASANSGDPVAGNPGDAGYGSVRSGFLEMSNVDLA 254

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E + +I   +SY  +++ I  +D ML+ L+   +
Sbjct: 255 NEFTEMIVTSRSYQANSRSITTSDTMLEELINLKR 289



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 37/197 (18%), Gaps = 9/197 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           +L           N   +   I  NI N +   +                  Q   N   
Sbjct: 1   MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQAGINAQQ 60

Query: 62  --------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                     D V+   S     + L    E             N+       L      
Sbjct: 61  VGLGVQVGSIDTVMTGGSLQSTGRALDFGIENGDSSFFTVTDGTNTFYTRDGGLYADPSG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                S   +              F   +        +  + I          L   +V 
Sbjct: 121 NLVTSSGLQVQGYSQGAPATNDAAFVPGSLGTTMEPINIPQTIPNPDGGDALELQSYSVD 180

Query: 174 NDAIKFKTASKHDAHDF 190
           ND     + S   +   
Sbjct: 181 NDGFIVGSYSGGKSMVL 197


>gi|205355740|ref|ZP_03222510.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346517|gb|EDZ33150.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 852

 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 105/396 (26%), Gaps = 11/396 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           +    N+P    +  + ++     +         + + +  +   +              
Sbjct: 460 NQANINTPGTPENNYQLAMNGSFLTTTPRVFRTTEDLRELLQRDARYGVDYDGSGGFEVT 519

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
             D    + +         +   N A        +      +    +    ++   +ST 
Sbjct: 520 GQDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNVTAYSNKQGTVSTN 579

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                    +    T   +    +       S  +    +      + V   + S    G
Sbjct: 580 DAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 639

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
             +  + IR    P   N   E    ++   +  +     +   P               
Sbjct: 640 GNEWQMIIR-VPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQ 698

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNK 384
              +S     +     + +        +     +         +    +++  + +    
Sbjct: 699 QIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTF 758

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A +  N  L E   N   +     S +  +          +  S      V+L
Sbjct: 759 AVAKMAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDL 816

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 817 SRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852



 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/435 (6%), Positives = 83/435 (19%), Gaps = 41/435 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++         + +N     +     D+    +++    +  ++         + N + V
Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                      V     F    +     E   I++       +      +          
Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGEGARANQGNNGVFD 282

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            +        +         +                                   +   
Sbjct: 283 PNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAPNDTRDGTG 342

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           V    +++ S +      +     N+KN+    +  N   +  N     +P      N+ 
Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNANNSAGELINIRVAGNPADFDWNNIN 402

Query: 400 LLEYARNSIGWLEKN 414
           L       I      
Sbjct: 403 LRPAGNPIIRGNGSA 417


>gi|86150552|ref|ZP_01068776.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839004|gb|EAQ56269.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 852

 Score = 87.8 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 105/396 (26%), Gaps = 11/396 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           +    N+P    +  + ++     +         + + +  +   +              
Sbjct: 460 NQANMNTPGTPENNYQLAMSGSFLTTTPRVFRTTEDLRELLQRDARYGVDYDGSGGFEVT 519

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
             D    + +         +   N A        +      +    +    ++   +ST 
Sbjct: 520 GEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNVTAYSNKQGTVSTN 579

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                    +    T   +    +       S  +    +      + V   + S    G
Sbjct: 580 DAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 639

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
             +  + IR    P   N   E    ++   +  +     +   P               
Sbjct: 640 GNEWQMIIR-VPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQ 698

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNK 384
              +S     +     + +        +     +         +    +++  + +    
Sbjct: 699 QIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTF 758

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A +  N  L E   N   +     S +  +          +  S      V+L
Sbjct: 759 AVAKIAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDL 816

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 817 SRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/435 (6%), Positives = 82/435 (18%), Gaps = 41/435 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++         + +N     +     D+    +++    +  ++         + N + V
Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                      V     F    +     E   I++       +      +          
Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGQGAQANQGNNGVFD 282

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            +        +         +                                   +   
Sbjct: 283 PNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAPNDTRDGTG 342

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           V    +++ S +      +     N+KN+    +  N   +  N     +P       + 
Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNPNNSAGELINIRVTGNPADFDWNRIN 402

Query: 400 LLEYARNSIGWLEKN 414
           L       I      
Sbjct: 403 LRPAGNPIIPGNGSA 417


>gi|88799021|ref|ZP_01114602.1| Flagellar hook protein FlgE [Reinekea sp. MED297]
 gi|88778248|gb|EAR09442.1| Flagellar hook protein FlgE [Reinekea sp. MED297]
          Length = 1472

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/391 (10%), Positives = 104/391 (26%), Gaps = 14/391 (3%)

Query: 100  PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               Y     +S+ +   + + DIL  + I     V          +          + L 
Sbjct: 1083 INSYSGTSLNSISADLDDETGDILINSSIGIDISVAIESPREQDGLTVQGYTGTPPVTLG 1142

Query: 160  ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                    + +    D +  +  +  +    +      L + S    +      ++    
Sbjct: 1143 RGADAETNARIGGYVDIVLNEGYTMTEPDPRVAGLFNGLTESSFEEYVINEFNPDDPETY 1202

Query: 220  YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
              S   T+++++      +          + P  ++   V +            +L    
Sbjct: 1203 NESASLTVYDSLGNQHRLQLFYVKDPEDPARPQALNSWTVYAQIDGENVGDPDASLPFPE 1262

Query: 280  DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD------------LD 327
            +      + +L   A   +   +  + +  N + V     ++G                D
Sbjct: 1263 NIEPTYAEFKLYFNADGTLDEENTGEWLISNWDPVDENGDSNGAYTSLNVAEGGSLPIPD 1322

Query: 328  NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
                   S +     QY    +                  +     +   Y +   +   
Sbjct: 1323 PNTNSNFSVSFGGTTQYGGPFARYNFQQDGYASGRLKDLEIDDDGTIYARYTNGEAQVLG 1382

Query: 388  FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
               +A       L    +    W E   S    +      +   +  +      V+L E+
Sbjct: 1383 QVALASFANMEGLNPVGQ--TEWQESFESGDATIGEPGTGLLGTLQSAALEDSTVDLSEQ 1440

Query: 448  LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            L  LI  +++Y  S K I   + + QT++  
Sbjct: 1441 LVHLIIAQRNYQASAKTIETANAVTQTIINL 1471



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/450 (8%), Positives = 98/450 (21%), Gaps = 23/450 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F    +    A++       NI NA    +         +              + V  
Sbjct: 2   SFGSGLSGVAAANKDLKITGNNIANASTTGFKASRAEFGDAYTTSILGMGQDPIGSGVNV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +      +   +S +        F         +   N+             + Y 
Sbjct: 62  NNVGQKFEQGNISQTNSVLDLAIDGNGF------FVTEYPNNSVTYTRSGIFGIDKDGYI 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTS--AREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +     L    ++    V             Q  R     E ++ +      L  +   
Sbjct: 116 VSNQGATLQGFGVNENGIVSGILTDLRVDAGSQPPRGTHGVEAQVNVPAGANVLQSIGST 175

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
                                 +    I    G ++ +         T  G         
Sbjct: 176 TRTTGLAVGVAQVGPAQDTTTTLTPIGIPTTEGTASQIVGGPIGFSGTVPGINFPWQPNT 235

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
                 ++        N               ++    +  L+   ++ +    +   ++
Sbjct: 236 SQASSTIDFTLQGPNINGGLSPLTATVQPFSDSIIYDDVNDLVSSINASINGDPDLAGKV 295

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
             V+          AG         ++      +    + ++          ++ + L  
Sbjct: 296 QAVVNNFGGITFETAGTYATDGTNIVSIADNVNNLSDPEYLNFGSTGVTFAGNSVAGLNI 355

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G+ +   L   +NL      +N +  +            I   +   E    +      
Sbjct: 356 TGADTGSRLTGGRNLNSLDSTVNFFDGAAVAGQDLVYNVNIGGTLFANETFTFNAAGYAT 415

Query: 414 NRSDSHDLHMKSQVVFN-----HISESYSN 438
             + + DL+ ++           I+     
Sbjct: 416 LGAFAADLNAQASAGLQAEGQFQINAGRLE 445


>gi|301631988|ref|XP_002945073.1| PREDICTED: flagellar basal-body rod protein flgF-like [Xenopus
           (Silurana) tropicalis]
          Length = 430

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +    Q+ +  +                 N+     ++  Y +   +      +A     
Sbjct: 63  LDDVTQFGTKFAIAETTQDGYTAGQLTGINIGPDGTILTRYSNGVTRPEGVVALASFRNT 122

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L +   N   W+E   S    +   +   F  +         V+L  EL  ++  +++
Sbjct: 123 QGLSDIGNNL--WVETFESGQPTVGQPTSGSFGALRSGALEDSNVDLTAELVNMMTAQRA 180

Query: 458 YNISNKLIMFTDKMLQTLL 476
           Y  + + I   D+++ TL+
Sbjct: 181 YQSNAQTIKTQDQVISTLV 199



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/465 (9%), Positives = 104/465 (22%), Gaps = 53/465 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F +  +    AS+    I  NI N+    +    T       +                
Sbjct: 2   SFQQGLSGLTAASKNLDVIGHNIANSGTVGFKASRTEFDEMVASAIGSA----------- 50

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
             +  +  IG    L          +  +   +  T                     L  
Sbjct: 51  --NGTNGGIGVGVKLDDVTQFGTKFAIAETTQDGYTAG------------------QLTG 90

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             I     ++  ++      + + A A       +S++   L   T  +        +  
Sbjct: 91  INIGPDGTILTRYSNGVTRPEGVVALASFRNTQGLSDIGNNLWVETFESGQPTVGQPTSG 150

Query: 186 DAHDFLDQR--DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                      D  +   +E++ + T  R       Y S+  T+                
Sbjct: 151 SFGALRSGALEDSNVDLTAELVNMMTAQRA------YQSNAQTIKTQDQVISTLVAHRQA 204

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
            +++    +  +G     +   +VP                  +    E     + +  +
Sbjct: 205 VLSNNLANVSTNGFRAEMSTFRSVPM----------QGDGATTRVFALEATSGHVQTPGQ 254

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                 N + +        ++ LD       + +  V    +   S      S     + 
Sbjct: 255 VQRTGRNLDAMAVGPAWFAVQGLDGTEAYTRAGSFQVTQAGQLVTSTGLPVLSDGGTPID 314

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
                                               L +  +     L +  S +     
Sbjct: 315 VPPGAEITLGADGTLTAQTAGQPPAPVGRIKLATPGLDDPLQRGNDGLFRTASGAPLAQD 374

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +  +             VN  E +  +I   + +    +L+   
Sbjct: 375 PNAALL----SGALEGSNVNAVESMVGMIAAARQFEQQMRLLQTA 415


>gi|295096225|emb|CBK85315.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 402

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 96/412 (23%), Gaps = 13/412 (3%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                S +                SA   + +    +      S       ++      T
Sbjct: 3   FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFT 62

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                          ++       DA+  +    +   +      +VN      T     
Sbjct: 63  DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPVA 122

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                 Q     Q IS    +               + T         + F+  N  +  
Sbjct: 123 GTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNST----DTAPTVAFDPSNPDSYN 178

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            +      D    + N      K +  A      S          ++A  L  + S    
Sbjct: 179 KKGTVTVFDSQGNAHNMNLFYVKNETPANSWKVYSQDGSVAGDAAKLATTLTFNESGVLT 238

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              + +                              Q     + +    +  K       
Sbjct: 239 GGDDIKITT-------GTVPGATPATFDMSFANSMQQNTGANNIVATSQNGYKPGDLVSY 291

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     ++ +Y +   +      +A    N  L     N   W     S    L     
Sbjct: 292 QINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNV--WSATQSSGVALLGTAGS 349

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 GNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401



 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 79/396 (19%), Gaps = 9/396 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  + +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +      VQ               A K        +    ++             
Sbjct: 116 LTGYPVAGTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNSTDTAPTVAFDPSNPD 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S +                  +  +      N+  V                      + 
Sbjct: 176 SYNKKGTVTVFDSQGNAHNMNLFYVKNETPANSWKVYSQDGSVAGDAAKLATTLTFNESG 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                +   I    V  ++     +            +++V   QN       V      
Sbjct: 236 VLTGGDDIKITTGTVPGATPATFDMSFANSMQQNTGANNIVATSQNGYKPGDLVSYQIND 295

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +   +   S     +     + +  N            +    S  + L   GS +   L
Sbjct: 296 DGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTL 355

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            N    A   DL     +       +   A      
Sbjct: 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 391


>gi|299534778|ref|ZP_07048108.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis
           ZC1]
 gi|298729866|gb|EFI70411.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis
           ZC1]
          Length = 322

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 69/226 (30%), Gaps = 2/226 (0%)

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           DG  + ++   A          +  ++ +          +   + +   K  +  ++ + 
Sbjct: 99  DGFFMVADANGAPDPDSGFIDEEGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGDE 158

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
             +   D   + +N       E   +            D G +         ++     +
Sbjct: 159 IVMEADDDGINPENAPIASGDEGANLFDDDGVLAPDAGDVGPIRIPTTAKEISIGPNGTI 218

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                +   K      +A       L +   N   + +   S +    + +      +  
Sbjct: 219 EYVDLNGNRKWAGQLIMAKFPNAGGLAKVGGNY--YQQTANSGAAYAQVATVAGMGKVVP 276

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 277 GTVEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEVLQELVNLKR 322



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 30/156 (19%), Gaps = 29/156 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRS- 57
           +L       +   N   +   I  NI N +   + +         + +    +  T    
Sbjct: 1   MLRSMYSGISGLKNFQTKLDVIGNNIANVNTIGFKKGRVNFKDLMSQTQAGASAATATRG 60

Query: 58  ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96
                           +       L      +        F  + +   A D        
Sbjct: 61  GVNPQQVGLGAQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIDE 120

Query: 97  ---NNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
              NN+              Y  N     L      
Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAG 156


>gi|121613214|ref|YP_001001371.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006263|ref|ZP_02272021.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|30721660|gb|AAP34261.1| FlgE [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87248993|gb|EAQ71955.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 838

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 111/395 (28%), Gaps = 9/395 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           +    N+P    +  R+++     N +      T                 +        
Sbjct: 446 NQANINTPGTAENNYRNAVNGSLLNTTVRTFRTTEDLRELLQRDARYGVDYDGSGGFEAD 505

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
             ++   +        E  + N  ++    +    ++                       
Sbjct: 506 GSDVNEGVKVTVGATGEFIISNPNVQSTPPNGIVQNNRRPHDISFNVTAYTDAKGKVSTN 565

Query: 213 NNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                +    DG  T        +  F    S  +    +      + V   + S    G
Sbjct: 566 MAFTNIFKGFDGVLTVGNSNRQSEQLFLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 625

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
             +  + IR           +    +++G+    +  +  + +   +  +       N+ 
Sbjct: 626 GNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSLANYSPKTINFSPNNGAAPNQQ 685

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKN 385
            +    T   N    S+ S     G  +  +       +   +    +++  + +     
Sbjct: 686 IKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFA 745

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +A +  N  L E   N   +     S +  +          +  S      V+L 
Sbjct: 746 VAKMAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLS 803

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 804 RSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 838



 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/421 (7%), Positives = 84/421 (19%), Gaps = 38/421 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I---SNLRRFLSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVR 212
           +   +NL   LS  T         +    +  D      +   +     +    +    +
Sbjct: 173 VAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++   G  L     + I     +S   T   N + +      + Q   +  G  
Sbjct: 233 GVDCAALFNGKGDGLNLRDGQGIWVSYADSKFSTDVPNGVNVFNPNTQATQNGVIFWGDE 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              + +  ++  +        +      +        ++    G+           +   
Sbjct: 293 NNAVNLDITLNGVRIQNNSIKSLDQAIEYINTFTAPTDTREGTGVKAVRKADGSGIEFIN 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             ++    N +         +         W   N +          +S           
Sbjct: 353 TNADGTTDNMKNIDLVVNQANTAGERHNLTWQANNNSFQATSRKQGANSVWIPGNNPVNG 412

Query: 393 G 393
            
Sbjct: 413 T 413


>gi|330721146|gb|EGG99270.1| Flagellar hook-associated protein FlgK [gamma proteobacterium
           IMCC2047]
          Length = 604

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/425 (11%), Positives = 108/425 (25%), Gaps = 8/425 (1%)

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                     +V  +    +    L   F  +   ++         +  I+   +     
Sbjct: 187 VVRSPTGAISRVGSSVDGGMMSGLLSAQFGVIDNALNNLGRVALGLSDAINTAHNLGMDL 246

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             NL  D L   + D +    +    +   +   ++      ++   ++  +    T  N
Sbjct: 247 ENNLGGD-LFTGINDASVVSQRTVAGANNSLPSDQSVTVTVSDISQLSVSDYQLTFTGPN 305

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +  + +               L   +     +  V      +   S   +  +     
Sbjct: 306 TYVLIRNSDGKTNTALDPSLTGTLPPAAPGTNATVTVDGLTIDLSRPSGSFSTGDRFLLQ 365

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                 N   V             + +   S        +  ++ D+    F      ++
Sbjct: 366 PTRGFSNELAVQVNRAEELALASPIRTTGASTNTGTAGISAGEVTDTSTAFFTTTSQALS 425

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L+  F+            P   +A                 I          SF    
Sbjct: 426 PPLVIQFTSPTTYNILDNTNPAAPVALVPPQTGLAYPPASPNGILP-------ASFGFQV 478

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                    +   +A     +           +       N  +TL          +   
Sbjct: 479 EITGVPANGDSFEVAYNTGGVLDNRAGLAMVKVQTTDTIGNNQLTLEAAYGLFTQEVGTR 538

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +      S+++          + GVNL EE + L++ EQ+YN S ++I    ++  T
Sbjct: 539 TSTARGDAEASRILLEQSQGLLQESTGVNLDEEAANLVQFEQAYNASAQVINVARQLFDT 598

Query: 475 LLEGV 479
           L+  V
Sbjct: 599 LIRAV 603


>gi|323703177|ref|ZP_08114830.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323531836|gb|EGB21722.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 256

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 3/173 (1%)

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +       +             +G       N    S+   + D    +        N
Sbjct: 87  TLDLAIQGNGYFILTDGTNKYYTREGTFFIDINNNLINSDGLQVCDTSGKAITLQTTPVN 146

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                D    + +    +     +A  N    L     N   + E   S +         
Sbjct: 147 TISINDQGEIFVNGKTTSEGQVGIATCNNPAGLERVGNNL--YKESLASGTPTPGTARAA 204

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             + I+  Y     V+L EE++ +I  ++ Y  + ++I  +D +L+ L++  +
Sbjct: 205 G-STINSGYLEMSNVDLTEEMTNMITTQRGYQANARVITVSDTLLEELIQLKR 256



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 50/235 (21%), Gaps = 13/235 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53
           ++       +   N   +   +  NI N +   +                + S       
Sbjct: 1   MIRSLYSGVSGLKNHQIRMDVVGNNIANVNTNGFKASRVNFQDAISQTMRSASGTPAINP 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +Q      +    ++A    +                       N            + +
Sbjct: 61  SQIGTGVKVGGISINAGQGPLQNTGRTLDLAIQGNGYFILTDGTNKYYTREGTFFIDINN 120

Query: 114 YSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              N     +       I      V   + + +    +      E ++ I+         
Sbjct: 121 NLINSDGLQVCDTSGKAITLQTTPVNTISINDQGEIFVNGKTTSEGQVGIATCNNPAGLE 180

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            V N+  K   AS              +     +   +  +      ++ T  G 
Sbjct: 181 RVGNNLYKESLASGTPTPGTARAAGSTINS-GYLEMSNVDLTEEMTNMITTQRGY 234


>gi|169827129|ref|YP_001697287.1| flagellar basal-body rod protein flgG [Lysinibacillus sphaericus
           C3-41]
 gi|168991617|gb|ACA39157.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Lysinibacillus sphaericus C3-41]
          Length = 322

 Score = 87.4 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 68/226 (30%), Gaps = 2/226 (0%)

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           DG  + ++   A          +  ++ +          +   + +   K  +  ++   
Sbjct: 99  DGFFMVADANGAPDPDSGFIGEEGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 158

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
             +   D   + D+       E   +            + G +         ++     +
Sbjct: 159 IVMEADDDGINPDDAPIASGDEGANLFDDDGVLDPEDGEVGPIRIPTTAKEISIGANGTI 218

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                +   K      +A       L +   N   + +   S +    + +      +  
Sbjct: 219 EYVDLNGNRKWAGQLIMAKFPNAGGLAKVGGNY--YQQTANSGAAYAQVATVAGMGKVVP 276

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 277 GTVEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEVLQELVNLKR 322



 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 32/158 (20%), Gaps = 29/158 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRS- 57
           +L       +   N   +   I  NI N +   + +   +     + +    +  T    
Sbjct: 1   MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 60

Query: 58  ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKE---------MMSAD 93
                           +       L      +        F  + +             +
Sbjct: 61  GVNPQQVGLGSQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIGE 120

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
           + +NN+              Y  N     L        
Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGED 158


>gi|284926913|gb|ADC29265.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 852

 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/352 (10%), Positives = 97/352 (27%), Gaps = 5/352 (1%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISN-LRRFLSELTVVNDAIKFKTASKHDAHDF 190
           +         +   +    D ++ + + I+      ++   V ++            H+ 
Sbjct: 503 DARYGVDYDGSGRFEVTGEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNI 562

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
                    K   +       +         + G  + E+    ++          S  +
Sbjct: 563 NFNVTAYSNKQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGS 622

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
              ++   V  +            +     + +       + +        ++    + N
Sbjct: 623 KHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYN 682

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
            + +          +   KL  G S +        S  +                  +  
Sbjct: 683 PKTLNFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRV 742

Query: 371 Y--PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
               +++  + +          +A +  N  L E   N   +     S +  +       
Sbjct: 743 DDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGG 800

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +  S      V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 801 RGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/435 (7%), Positives = 84/435 (19%), Gaps = 41/435 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++         + +N     +     D+    +++    +  ++         + N + V
Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                      V     F    +     E   I++       +   A  +          
Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGAGAQANQGNNGVFD 282

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            +        +         +                                   +   
Sbjct: 283 PNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAPTDTRDGTG 342

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           V    +++ S +      +     N+KN+    +  N   +  N     +P      N+ 
Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNANNSAGELINIRVTGNPADFDWNNIN 402

Query: 400 LLEYARNSIGWLEKN 414
           L       I      
Sbjct: 403 LRPAGNPIIRGNGSA 417


>gi|28211323|ref|NP_782267.1| flagellar hook protein flgE [Clostridium tetani E88]
 gi|28203763|gb|AAO36204.1| flagellar hook protein flgE [Clostridium tetani E88]
          Length = 365

 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR------SDSHD 420
           ++     +     ++         +A    +  L +  +N       +            
Sbjct: 246 SVDKNGAINAVLANNEVVTIGQIGMADFKNSAGLYKEGKNLYSGTASSGDAIYRLGTDPT 305

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               ++  +  I +       V+L E+ + +I   +++  + K+I   D++LQ L+   +
Sbjct: 306 NDKSNEKGYGDIIQGRLEMSNVDLAEQFTEMIVASRAFQANGKIITTGDEILQDLVNLKR 365



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 6/104 (5%), Positives = 19/104 (18%), Gaps = 20/104 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVT---- 51
           +L       +       +   I  NI N +   +  +                  +    
Sbjct: 24  MLRSMFSGISGLKANQTKLDVIGNNIANVNTTAFKNQRIRFQDVLSQNLKFGTGASANVG 83

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL 86
                     V     +  +    +      +        +  +
Sbjct: 84  GTNPSQVGLGVEVAGIDTVVSQGNMQPTGRNLDFAVDGDGYFVV 127


>gi|254470337|ref|ZP_05083741.1| flagellar hook-associated protein, putative [Pseudovibrio sp.
           JE062]
 gi|211960648|gb|EEA95844.1| flagellar hook-associated protein, putative [Pseudovibrio sp.
           JE062]
          Length = 519

 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 127/311 (40%), Gaps = 2/311 (0%)

Query: 90  MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
           M       +S    ++   ++L S + + S     +  ++ AEE+ ++ NTSA++VQ++R
Sbjct: 1   MFGKVGDPSSIPSLMNNFTNALTSLATDPSSQSAQEVAVNAAEELSRSINTSAKQVQEMR 60

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            DAD  I  ++S +   L E+  + D+I  + ++  +     DQ D  L+ ++E + +  
Sbjct: 61  RDADAAIADDVSEVNSILKEIESLEDSIVLERSAGRETAHLQDQMDRQLEALTEKMDVEI 120

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI--DGVVVSSNQGSAV 267
              N+  + + T  GTTL+     ++ F    +  V    NPI +      V       +
Sbjct: 121 KQDNDGLLRISTKSGTTLYNDRASELQFTPQPTLGVGVVGNPIEVKSQSGAVMELTSFDL 180

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             G I AL+++RD V+P  Q++LDE+A  +  S S++      +++      A G+    
Sbjct: 181 KSGSIGALVELRDDVLPETQSRLDELASQMALSLSQQTSEGAAADDGGAPPTATGLSVDT 240

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           + L                +        +       +    A   D+++          +
Sbjct: 241 SNLNSSGDTIELEFEVNGESRKVTFVAVTDPGLLPLSSDATADSGDIVHGLVIPATSASL 300

Query: 388 FDPVAGINTNV 398
              ++G     
Sbjct: 301 QSQISGALGAG 311



 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/456 (11%), Positives = 136/456 (29%), Gaps = 18/456 (3%)

Query: 38  RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
           RRD    I+ +   V +   E +++ D ++   S+      L    +   E ++      
Sbjct: 60  RRDADAAIADDVSEVNSILKEIESLEDSIVLERSAGRETAHLQDQMDRQLEALTEKMDVE 119

Query: 98  --NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                   +     S  +   + + ++           VV N      +   +      +
Sbjct: 120 IKQDNDGLLRISTKSGTTLYNDRASELQFTPQPTLGVGVVGNPIEVKSQSGAVMELTSFD 179

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           ++         L +  +     +    +   A     Q              +    + +
Sbjct: 180 LKSGSIGALVELRDDVLPETQSRLDELASQMALSLSQQTSEGAAADDGGAPPTATGLSVD 239

Query: 216 DMVVYTSDGTTLFETVPR----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
              + +S  T   E         + F  +    +   S+    D   +            
Sbjct: 240 TSNLNSSGDTIELEFEVNGESRKVTFVAVTDPGLLPLSSDATADSGDIVHGLVIPATSAS 299

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLI-GSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           +++ +                  +VL   S    +     ++N   + +ADG +      
Sbjct: 300 LQSQISGALGAGFDVSVDAGGELKVLAPTSPGTIEVTGLTAKNTRTVTVADGSEIPLFID 359

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
            +G         +     +      +V+K  + +   LAG  D  +    +  K+ +   
Sbjct: 360 SKGDGVPYTGALEDGGQKTGFAQRMTVNKAVIDDPSLLAGEADKQSSDRANLLKDRLTKT 419

Query: 391 VAGINTN-----------VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
               + +            T+  +   ++    +  S +      S+ V +    +Y N+
Sbjct: 420 EFTFSPSSGVGAKNAPYVGTISNFGIETVVKQSQIASAATSAESNSKAVTSIAKNAYENS 479

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             V++ EEL  L +++ +Y  + +++   D+M  TL
Sbjct: 480 YKVDVDEELVKLTELQNAYAANARVLSAIDEMYDTL 515


>gi|325295417|ref|YP_004281931.1| fagellar hook-basal body protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065865|gb|ADY73872.1| fagellar hook-basal body protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 568

 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/367 (10%), Positives = 98/367 (26%), Gaps = 17/367 (4%)

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
                  ++    ++V  N       V         +      N   +       +D  K
Sbjct: 214 DSLGNPHSLSYYFQKVDGNTWRVYSTVDGAIVPIKLKFADNTINDNLYSYIEFQFDDQGK 273

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T S    +    + D  + K +    +S +                + +    +  F 
Sbjct: 274 LITDSLKAGYQVSYKYDTDITKSAGEFDVSGLTAA--------IGSLHIKKIQKNNDEFL 325

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVL 297
                +    +  + + G   +   G+ +   G I   +      +      ++++    
Sbjct: 326 VNFHDSGVVRTITVDVGGTTETHYIGNILDSNGNIVGEIDYTSGKITFDDASIEKITLDY 385

Query: 298 IGSFSEKDPIAGNSENV----PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +   S    + G  +N                  N        +   + +  ++      
Sbjct: 386 VEPVSSGATLTGTVDNPVKCPITTSYDTMTSPDVNNKNTIDISSFWNDLKQVASDFIFYA 445

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
               + K       ++    +   Y +   K+     VA       L+        WL  
Sbjct: 446 QQDGNSKGDIMSVAVSEDGTIRATYTNGKVKDIARLAVATFKDKEMLVRKGN----WLYV 501

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +    +    V + +         V++  E   LI  +++Y  + ++I   D++LQ
Sbjct: 502 PNVQTFTPVIMPGGVISKVRSGMLEMSNVDIASEFINLITAQRAYQANARVITTDDQILQ 561

Query: 474 TLLEGVK 480
             +   +
Sbjct: 562 ETMNIKR 568



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 104/421 (24%), Gaps = 33/421 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVT- 51
           +L  F  A    N      + I  NI N +   + + + +             +   V  
Sbjct: 1   MLQSFYTAFTGLNADKTWLSVISDNIANVNTVGFKKENAVFEDLLARSLTTFKNGAPVNQ 60

Query: 52  ----VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K+         ++ +      + F  +K+          +      + 
Sbjct: 61  EIGGGTFISTTVKDFSQGTFMNTNNPLDLALDGEGFFMVKD------ETGVTYYTRNGEF 114

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           R        N+    +   ++D    +          +     +  +      SNL   +
Sbjct: 115 RLDANGDLINMLGMKVQGWMLDEQGNLAGAVGAINIPMDMPPKETTEIKFESPSNLDSRV 174

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            + T + +      ++         + +      +  I  S    ++        DG T 
Sbjct: 175 EDATKMENDKAEIGSNFSHIGFDPSEANSYSYINTVTIYDSLGNPHSLSYYFQKVDGNTW 234

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                 D     +      +  N      +    +    +    +KA  Q+         
Sbjct: 235 RVYSTVDGAIVPIKLKFADNTINDNLYSYIEFQFDDQGKLITDSLKAGYQVS-------- 286

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
               +    +  S  E D     +             + +  +    S  +         
Sbjct: 287 ---YKYDTDITKSAGEFDVSGLTAAIGSLHIKKIQKNNDEFLVNFHDSGVVRTITVDVGG 343

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +     G++      N+     Y      + D+  +    D V  +++  TL     N 
Sbjct: 344 TTETHYIGNI-LDSNGNIVGEIDYTSGKITFDDASIEKITLDYVEPVSSGATLTGTVDNP 402

Query: 408 I 408
           +
Sbjct: 403 V 403


>gi|316936123|ref|YP_004111105.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1]
 gi|315603837|gb|ADU46372.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1]
          Length = 422

 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/484 (10%), Positives = 106/484 (21%), Gaps = 66/484 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    + A +  N  SQ  A I  NI N+    Y       +      +  +  S   
Sbjct: 1   MSLTGALSSAISALNAQSQSLAMISDNIANSQTVGYKTTSASFSQLVTAASGASTYSSGG 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS----ADDHYNNSPTHYISKLRDSLESYSK 116
                  +  +  +       +   +                +              Y  
Sbjct: 61  VTVLARSNITTQGLLTTTTSSTDIGISGNGFFPVTTAVTGGTTLYTRGGSFTLDNSGYLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L     D    V    +            A        + +   L     VND 
Sbjct: 121 NASGAYLLGWRTDADGNVAGGASADTMVPIDTSVAATSGSATTTTTVAANLPADAAVND- 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                                                        +   +L++++    +
Sbjct: 180 -------------------------------------------TFTTSMSLYDSLGTANS 196

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +   + T  +     F +  + S+   +        A+    D  +         ++  
Sbjct: 197 MQITWTKTAENSWTATFANPTLASNTATATGTVSGSIAISFNSDGSLASTNPSPATISVT 256

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              + +    I  +     G                                        
Sbjct: 257 GWTNGAADSVITMDLGTAGGTDGLTQYSSGATTPA----------------VDLTSIESD 300

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +   +     +   Y +         PVA       L               S
Sbjct: 301 GMAYGKLSSIAIGDDGTVSATYSNGKTTTIYKVPVATFAAADQLEAKDNGMYA--ATLAS 358

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +  + +        I          +   E S +I  +Q+Y+ ++++I   ++M  TL+
Sbjct: 359 GTAVVQLSGTNGAGSIEGGVLEASTSDTNTEFSSMISAQQAYSAASQVISAVNEMYDTLI 418

Query: 477 EGVK 480
             ++
Sbjct: 419 SAIR 422


>gi|34497159|ref|NP_901374.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472]
 gi|34103016|gb|AAQ59379.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472]
          Length = 393

 Score = 87.0 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 2/210 (0%)

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G    L Q              ++   ++ + ++           P   +   +      
Sbjct: 186 GNKHNLTQYFCKSADSTITVHYQLDDKMLPATTDLKFDTAGKMTQPTAAVDLDLGTPAGA 245

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
               ++       Q+   PS +R+  +          +L    ++I  Y +   +     
Sbjct: 246 NALKVAVDYSGTTQFAGEPSTVRNAANGYPPGARTGVSLGENGEVIVSYSNDQKQVVARL 305

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +A       L   A +   W E + S    L      +   +  S      V++  EL 
Sbjct: 306 AIANFANQGALT--AASQTSWQESSASGPALLSPAGSNMAGKLVTSSLEQSNVDVTSELV 363

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            L+  +++Y  + K+I   ++++Q L++ V
Sbjct: 364 SLMTAQRNYQANTKVISTENQVMQALMQAV 393



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/392 (7%), Positives = 86/392 (21%), Gaps = 12/392 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F  A +  N  + Q  S+  NI N+    +         +      +   +       +
Sbjct: 2   SFEIALSGINAVNNQLGSVSDNIANSGTYGFKSGRVTFASAYAGSQAMGVNANPN---SQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +  +   +   R L +    +    +           +       + Y  +     +  
Sbjct: 59  NIGRNGGLVNTGRALDAAIDGRGFYVSRSVAGAVSYSRVGIFDTDKDGYLVDNYGGRVQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                   +             I A    +++   +    +  +    +  +        
Sbjct: 119 YAQSEGGALGAL-GDIQIPTGNIAAKPSDQLKYSGNMSAGWAVQTVPFDKGVSQSFNHST 177

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            +  +    +             + +  +  +       TT  +        +   +  +
Sbjct: 178 VSPVYDSLGNKHNLTQYFCKSADSTITVHYQLDDKMLPATTDLKFDTAGKMTQPTAAVDL 237

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
              +        V     G+    G+   +    +   P  +  +       +      D
Sbjct: 238 DLGTPAGANALKVAVDYSGTTQFAGEPSTVRNAANGYPPGARTGVSLGENGEVIVSYSND 297

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                +      F   G     ++     S          S P+ L   GS     L   
Sbjct: 298 QKQVVARLAIANFANQGALTAASQTSWQESS--------ASGPALLSPAGSNMAGKLVTS 349

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                  D+ +           +     + + 
Sbjct: 350 SLEQSNVDVTSELVSLMTAQRNYQANTKVIST 381


>gi|94500241|ref|ZP_01306774.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65]
 gi|94427540|gb|EAT12517.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65]
          Length = 1240

 Score = 87.0 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/443 (9%), Positives = 113/443 (25%), Gaps = 25/443 (5%)

Query: 58   ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                   +     S++      L  +      M    +     +  ++ + + +   +  
Sbjct: 801  IASIFNRQAGVTASASSELTIPLSGYNNPGNNMKVTLNGQELESTSLADMVEEINGLTTT 860

Query: 118  L-----------SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                         + I+  ++  + +  + +   +   V +  A+A   +    +     
Sbjct: 861  TLPGFSAELNENGDMIIKNSIGRDIKVEIDSPTVTDSLVIQGSANAGPVVLGGTATADTA 920

Query: 167  LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
                  +           +           L +   E   ++     +       +  TT
Sbjct: 921  AVVGGTIEFIFNEGYTISNPIPSVSGVFGALSEDEFEDYVLNVFDAQDQ-DTYNHATSTT 979

Query: 227  LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
            +++++       +         + P   +   +               L    +     F
Sbjct: 980  IYDSLGNSHIMTQYFVREPLDPTRPNEENVWAMYVQIDGKDVGDPDSTLPFPDNLEPTQF 1039

Query: 287  QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-----------KDLDNKLCQGIS 335
            + +L           S       N + V       G               D        
Sbjct: 1040 RQELFFNPDGTFDQQSTGPIFVTNWDPVDEEGSPTGALKSQNVLEGGLPLNDPPTNSNFE 1099

Query: 336  ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
              +  + Q+ S  S      +           +     +   + +   +      +A   
Sbjct: 1100 ILLEDSSQFGSPFSVSEVSQNGYTTGRLTGLEIDADGFIFARFTNGQAEVLGQVALASFK 1159

Query: 396  TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
                L+        W E   S +  +       F ++  S      V+L EEL  LI  +
Sbjct: 1160 NPEGLIPLGD--TAWGESFESGTPTVGSPRTGTFGNLRSSALEDSNVDLSEELVGLIIAQ 1217

Query: 456  QSYNISNKLIMFTDKMLQTLLEG 478
            +++  S K I  +D + QT+++ 
Sbjct: 1218 RNFQASAKTIETSDTVTQTIIQL 1240



 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/425 (9%), Positives = 85/425 (20%), Gaps = 26/425 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENVTV 52
            FN   +    AS        N+ NA    +                          V V
Sbjct: 2   AFNIGLSGIRAASTDLEVTGNNVANASTVGFKESRAEFADVYTTTILGTGSKPVGSGVLV 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R          +    +A+        F  L +                       +
Sbjct: 62  DNVRQ---EFSQGNISGTENALDMAIDGNGFFILNDN-------GTESYTRAGIFGLDKD 111

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            +    S   L     +    V          +          +   I+     L +  +
Sbjct: 112 GFVVANSGARLQGYEANGDGVVNGVLGDVQIRIGNQPPSLTSRVSSIINVDASELVKQEL 171

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-STIVRNNNDMVVYTSDGTTLFETV 231
            +       A         D    +L  +++     +      ++  V  S    +    
Sbjct: 172 GSRLTSDGLAVAAPDAGIADSTSTVLSTVAQPTTAGNRTALTFDNGGVDLSAQANVVAQT 231

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                   ++ +  T         G V      +   +  + AL    D+V    + ++ 
Sbjct: 232 DPGAFGVTIDPFDGTGAQVINIPAGTVTIGATPTQHLQNILNALQSEIDAVFGNNEFEVS 291

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                L         +                         G+      N    +  +  
Sbjct: 292 TNQSPLTAPLVAGTNLVIERAGFDATTGTSFSVTAPTGAWNGLFGDPAANTNVTAGVAGN 351

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           R     S     + +++ G                 F        + T+       IG  
Sbjct: 352 RLF-VGSNPLTADFRSIPGTSTTTRTTATPPLAMTGFIAGDHAQLSSTIAN-GGTVIGDF 409

Query: 412 EKNRS 416
               S
Sbjct: 410 GGANS 414


>gi|34558065|ref|NP_907880.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740]
 gi|34483783|emb|CAE10780.1| FLAGELLAR HOOK PROTEIN [Wolinella succinogenes]
          Length = 716

 Score = 86.6 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/414 (9%), Positives = 103/414 (24%), Gaps = 5/414 (1%)

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           + +         Q        +  +    N           +  +   +++      T  
Sbjct: 306 SETGVEAFATGGQLRLVNDNSLDGNASKKNVIITASGGALANFTAADNSITAFRYAYTTA 365

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
            +A+        +  +++ +       I+     +    +  +V     K       +  
Sbjct: 366 SDADS-TSRLFRTTEDLRALLQQDANNIKHGGGYVDSTGTNASVKVTINKTGMFEILNQD 424

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
           D       L   +S     +          +   +   L E      +   M +    + 
Sbjct: 425 DGDTTTGNLSLTVSSYYDTNVTSNVLFKSAMKGLNTGILVEGGSSTTSASLMAAKHTATT 484

Query: 249 SNPIFIDGVVVSSNQG--SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                +      +         +      +    + V     + +      +    +   
Sbjct: 485 DIVDSLGNKHTLTVTFRKVGPQEWSFSLHVPEPATFVNGSGERPNYFEGGRVTFGEDGGL 544

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              N   +     +         L  G+S T           +      +  +  +    
Sbjct: 545 TGMNPPTIQFNPKSGASSPQRIDLDFGVSGTFQGLTSTDKESATGNIYQNGYQSGVLEDW 604

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                  LI  + +  +       +A    N  L     N         S    +     
Sbjct: 605 RFDSNGVLIGEFSNGKDLALAQVAIASFTNNGGLQAEGSNLFSQ--TANSGEPVVGTAGS 662

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                IS S      V+L   L+ LI V++ +  ++K +  +D++L TLL+  +
Sbjct: 663 GGRGKISPSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ 716



 Score = 67.4 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/412 (7%), Positives = 84/412 (20%), Gaps = 41/412 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       +              NI N +   +       +     V            
Sbjct: 1   MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRANFSDMLSQVNRIATSPYGGLG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                      +  S  K      +   ++ +        F  +            +   
Sbjct: 61  GQNDYSIGLGTSINSTTKIFGQGSIQDTTNKMDLAIGGDGFFIVSGN-----GGRTNAYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                         N +  I+                          +DA   +      
Sbjct: 116 RDGAFGFDAAGNMVNNAGYIVQGWT-----------RDLNSGSTSCYSDALYNVVDTTVP 164

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
           +     E  +V  A      +        D  D L    +  +  +++   +     Y S
Sbjct: 165 ISGIKIEPKMVIPAKATTQVNLDANLTAGDTTDKLGCMYA--LDSTSVTAADGIAARYDS 222

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            G  +       + F    +    SE   +++     S    +          + +  + 
Sbjct: 223 AGNKIQMAEDMGVLFNASGNALKLSEGQGVWVS---YSQATATQAVAVATTGTITLNGTT 279

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +    +        L+ + +  +     +               DN L    S+   +  
Sbjct: 280 ITFTNDSTISGVSSLVAAQNAINAKKSETGVEAFATGGQLRLVNDNSLDGNASKKNVIIT 339

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                 +      +    F +     +        +  + +   +    A  
Sbjct: 340 ASGGALANFTAADNSITAFRYAYTTASDADSTSRLFRTTEDLRALLQQDANN 391


>gi|255323598|ref|ZP_05364728.1| flagellar hook protein FlgE [Campylobacter showae RM3277]
 gi|255299312|gb|EET78599.1| flagellar hook protein FlgE [Campylobacter showae RM3277]
          Length = 756

 Score = 86.6 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/424 (11%), Positives = 97/424 (22%), Gaps = 14/424 (3%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L   +              +          +   T        +   Y  N +     
Sbjct: 338 NKLVLTNRNNLGTTANMKNIKMTVNTGGVPADDTGLT---DIKIITAYQYVYNKTHVSAT 394

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
               D  E  V         +QK   +      ++   +           +       ++
Sbjct: 395 HAYDDTKEREVTTTEDLREAMQKDAREFTNYDHVQNPAVTGTNPLPAANQNNGAQVIVNE 454

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-----TLFETVPRDINFEK 239
           H  + F +      + ++  +   T    N    V  +        +L       +    
Sbjct: 455 HGQYQFKNPSAAGAKDMNIAVTGLTNATKNVTENVKFTASMAPISGSLSAGGATRVTDSL 514

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +   +S      +                +           V    +      R ++ 
Sbjct: 515 NMAAHSSSTDLYDSLGTKHNVKMDFIKRGYTENGGTEWTMVIQVAEPNSINTVEPRNVVT 574

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ----YRSNPSFLRDGG 355
            +   +P    +   P                  +               +N S      
Sbjct: 575 GYVRFNPDGSLATYSPASITFGAQNGSAIGQNIELKFGTTQTTDGLTSTDNNSSTADISQ 634

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   N   +     L+  + +  +       VA    N  L     N         
Sbjct: 635 DGYASGELNGIRIDQSGTLVGSFTNGRSLGLAQVGVAKFANNQGLAGEGGNLFSR--TAN 692

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +          IS S      V+L   L+ LI V++ +  ++K I  +D+ML TL
Sbjct: 693 SGDPIIGAAQTAGRGKISASSLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTL 752

Query: 476 LEGV 479
           L+  
Sbjct: 753 LQLK 756



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/421 (7%), Positives = 72/421 (17%), Gaps = 37/421 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++                      NI N +   Y                          
Sbjct: 1   MMRSLWSGVTGLQAHQIAMDVEGNNIANVNTVGYKYNRANFDDLIYQTSRIATAPQNQHG 60

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                       + +            L               F      M + D    +
Sbjct: 61  GVNNMEVGLGTQINSTTRI---FKQGSLQTTDKQTDIALQGDGFF-----MVSSDGGKTT 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                       E    +   +I+   + D     +            +           
Sbjct: 113 YYTRNGDFSRDSEGNFVDNGGNIVQGWMRDEETGEIDPTRPIGDIKIPVGLTVPARATTN 172

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           I+      S   V N  I      +H      +  D+          +        +   
Sbjct: 173 IALKGNLDSGNDVGNKKIPIYKLDQH-----HNGVDLDNDGTIAGSEVHDENNVGANRFY 227

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-KIKALLQI 278
              +G         D+     ++    +  +     G  + ++   A   G  +  +   
Sbjct: 228 VNKNGEQRMTERGADLGVLFNSNGDAYNLRDAQGTGGQGIWASYADAKTDGLTVAGVGAD 287

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
                P  +  +    + + G             N            ++       +   
Sbjct: 288 GSFAAPGKKLNITLNGKNITGENILTIGQLAGIINGKYSETGVEASVVNGNKLVLTNRNN 347

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   N     + G V                   +     +    +D         
Sbjct: 348 LGTTANMKNIKMTVNTGGVPADDTGLTDIKIITAYQYVYNKTHVSATHAYDDTKEREVTT 407

Query: 399 T 399
           T
Sbjct: 408 T 408


>gi|138894748|ref|YP_001125201.1| flagellar basal body rod protein FlgG [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266261|gb|ABO66456.1| Flagellar hook protein [Geobacillus thermodenitrificans NG80-2]
          Length = 264

 Score = 86.6 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 2/207 (0%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                R   +      +D +        + +      S +   +       +        
Sbjct: 60  GGTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQMYTRAGN 119

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                       +    L DGG +         ++    ++         +      +A 
Sbjct: 120 FYLDSEGYIVNANGLYLLGDGGPLQIDPNAKSLSIGADGNVTIVDDTGNLQLVGTIQLAK 179

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L +   N   + E   S    + +        +         V+L EE + +I 
Sbjct: 180 FANPDGLEKEGNNL--FRETVNSGDPQIGVPGANGTGKLVSGALEMSNVDLAEEFTEMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +  + ++I  +D++LQ L+   K
Sbjct: 238 AQRGFQANTRIITTSDEILQELVNLKK 264



 Score = 63.1 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 34/145 (23%), Gaps = 25/145 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +L           N   +   I  NI N +   + +  T+                    
Sbjct: 1   MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDLMSQTISGASGPSAASG 60

Query: 45  -ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
             +P  V + +Q +    +     L      +        F  + +      + NN    
Sbjct: 61  GTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDA-----NGNNQMYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127
                    E Y  N +   L    
Sbjct: 116 RAGNFYLDSEGYIVNANGLYLLGDG 140


>gi|239826621|ref|YP_002949245.1| flagellar basal body rod protein FlgG [Geobacillus sp. WCH70]
 gi|239806914|gb|ACS23979.1| protein of unknown function DUF1078 domain protein [Geobacillus sp.
           WCH70]
          Length = 264

 Score = 86.6 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 2/152 (1%)

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                       N         L  G  +            G    +N+  +   K+   
Sbjct: 115 TRAGNFYLDKDGNIVNADGLYLLGIGNKLINIPSSAESFSIGSDGTVNYIENGSLKSAGQ 174

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A  N N  L +   N   + +   S +             I         V+L EE 
Sbjct: 175 IQLAKFNNNDGLEKAGDNL--FRQTANSGTATTGAPGANGTGTIVAGTLEMSNVDLAEEF 232

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I  ++ +  + ++I  +D++LQ L+   K
Sbjct: 233 TEMIVAQRGFQANTRIITTSDEILQELVNLKK 264



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 28/145 (19%), Gaps = 25/145 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +L           N   +   I  NI N +   + +  T+               T +  
Sbjct: 1   MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V            + +       L      +        F      +  D +  N    
Sbjct: 61  GVNPKQVGLGSQLAAIDTVHTQGSLQTTGRPLDLAISGDGFF-----VLGDKNGGNHVYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127
                    +    N     L    
Sbjct: 116 RAGNFYLDKDGNIVNADGLYLLGIG 140


>gi|118475525|ref|YP_892884.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414751|gb|ABK83171.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus
           82-40]
          Length = 911

 Score = 86.6 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 62/200 (31%), Gaps = 2/200 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     ++  +    +   S+   +  +  N+            + ++  G       
Sbjct: 714 GKINTETGEVANVIAGTVRFKSDGSLLGYSPSNLTFTANNGSAPGQNIEINFGKIGDYNG 773

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                +  +              N   +     +I  + +  +       +A    N  L
Sbjct: 774 LRSNDNTSTTDNIVQDGYTAGTLNELRVDESGTIIGAFTNGRSFGLAQVALAKFTNNEGL 833

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   +++   S +  +          I+ S      V+L   L+ LI V++ Y  
Sbjct: 834 ESDGGNV--FVQTANSGAPVIGSAQTAGRGKINASSLEMSNVDLSRSLTQLIVVQRGYQA 891

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           ++K I   D+ML TLL+  +
Sbjct: 892 NSKTITTGDQMLNTLLQLKQ 911



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/464 (7%), Positives = 93/464 (20%), Gaps = 32/464 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++                      NI N +   +                          
Sbjct: 1   MMRALWAGVTGLQAHQIAMDVEGDNIANVNTVGFKYSRASFADLFSQTAKVATAPQGDLG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         S  K      +               F  +     + D        
Sbjct: 61  GKNSMQIGLGTQINSVTKIFKQGSVQTTDKNTDLAIQGDGFFVV-----SPDGGKTYKYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                         + +  I+   + +     +           +           E++ 
Sbjct: 116 RNGDFSRDSLGNFVDKNGYIVQGWLRNEDTGTIDPTGPVKNIQIEPGLSTPARATTEVAL 175

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAH----DFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           +    S  ++   +    +    +            D   +  +++      V  +  + 
Sbjct: 176 IGNLNSGSSIGTKSSPIYSLDSKNGWLDKNGNGIWEDGETKNENDLSKNEYYVDKDKQVK 235

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           V  +    +   V  +   +  N                  S      VP G  K  + I
Sbjct: 236 VKETG---VDLGVLFNATGDAFNLREGQGMWVSYADAKASFSGELNPVVPAGGHKLNIAI 292

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
               +P       E     I + ++K  +  +  N   + + +          + I  T 
Sbjct: 293 NGIEIPSTSVTTVEDIVNKINTITDKTGVTASLINGNQIQLVNQNNLGSTDTMKNIKITK 352

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                     + +      +        N A           + +        A    N 
Sbjct: 353 LSGDTTSMTSTNVITAYKYTYTATATGGNHAYNDSTARKVHTTEDLRKAMQTDAREYVNY 412

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                ++ +   +    + S  +          ++ +  N + V
Sbjct: 413 QGENVSQAASAAISVANAVSAAVAANPAAPLADLTTAAINALNV 456


>gi|261419427|ref|YP_003253109.1| flagellar basal body rod protein FlgG [Geobacillus sp. Y412MC61]
 gi|319766242|ref|YP_004131743.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52]
 gi|261375884|gb|ACX78627.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61]
 gi|317111108|gb|ADU93600.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52]
          Length = 265

 Score = 86.6 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +                +A    N  L +   N   + E   S +        
Sbjct: 154 SIGADGKVTIVDASGTLSTIGTIQLAKFANNDGLEKAGNNL--FRETTNSGTPTTGAPGA 211

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I         V+L EE + +I  ++ +  + ++I  +D++LQ L+   K
Sbjct: 212 NGTGTIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKK 265



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 25/154 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +L           N   +   I  NI N +   + +  T+                    
Sbjct: 1   MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGRG 60

Query: 44  TISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
             +P+ V + +Q +    +     L      +        F  + +        NN    
Sbjct: 61  GTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDA-----SGNNRMYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                    + Y  N+    L        +    
Sbjct: 116 RAGNFYLDSQGYIVNVDGQYLLGVGNSRLQVPTD 149


>gi|196247630|ref|ZP_03146332.1| protein of unknown function DUF1078 domain protein [Geobacillus sp.
           G11MC16]
 gi|196212414|gb|EDY07171.1| protein of unknown function DUF1078 domain protein [Geobacillus sp.
           G11MC16]
          Length = 264

 Score = 86.2 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 2/207 (0%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                R   +      +D +        + +      S +   +       +        
Sbjct: 60  GGTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQMYTRAGN 119

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                       +    L DGG +         ++    ++         +      +A 
Sbjct: 120 FYLDSEGYIVNANGLYLLGDGGPLKIDSNAKSLSIGADGNVTIVDDTGNLQLVGTIQLAK 179

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L +   N   + E   S    + +        +         V+L EE + +I 
Sbjct: 180 FANPDGLEKEGNNL--FRETVNSGDPQIGVPGANGTGKLVSGALEMSNVDLAEEFTEMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +  + ++I  +D++LQ L+   K
Sbjct: 238 AQRGFQANTRIITTSDEILQELVNLKK 264



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 34/145 (23%), Gaps = 25/145 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +L           N   +   I  NI N +   + +  T+                    
Sbjct: 1   MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDLMSQTISGASGPSAASG 60

Query: 45  -ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
             +P  V + +Q +    +     L      +        F  + +      + NN    
Sbjct: 61  GTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDA-----NGNNQMYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127
                    E Y  N +   L    
Sbjct: 116 RAGNFYLDSEGYIVNANGLYLLGDG 140


>gi|315926654|gb|EFV06034.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 594

 Score = 86.2 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 113/395 (28%), Gaps = 9/395 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLES--YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           +    N+P    +  + ++     +         + + +  +   +              
Sbjct: 202 NQANMNTPGTPENNYQLAMSGSFLTTTPRVFRTTEDLRELLQRDARYGVDYDGSGGFGVT 261

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
             D    + +         +   N A        +      +    +    ++   +ST 
Sbjct: 262 GEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNVTAYSNKQGTVSTN 321

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                    +    T   +    +       S  +    +      + V   + S    G
Sbjct: 322 DAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDG 381

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
             +  + IR           +    +++G+    +  +  S N   L  +       N+ 
Sbjct: 382 GNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQQ 441

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKN 385
            +    T   N    S+ S     G  +  +       +   +    +++  + +     
Sbjct: 442 IKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFA 501

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +A +  N  L E   N   +     S +  +          +  S      V+L 
Sbjct: 502 VAKMAMASVANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLS 559

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 560 RSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 594


>gi|254496894|ref|ZP_05109741.1| flagellar hook-associated protein FlgK [Legionella drancourtii
           LLAP12]
 gi|254353879|gb|EET12567.1| flagellar hook-associated protein FlgK [Legionella drancourtii
           LLAP12]
          Length = 486

 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 128/401 (31%), Gaps = 22/401 (5%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                  +  S+L         +   +++ KT        +    T   + Q      ++
Sbjct: 91  GSGAGQLNISSQLTTGKIGGLMDYENNVIAKTSQTIGLMAIGLSQTFNAQNQLGMDLNNQ 150

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
             +   ++      +L          +++       ++  D+   ++S+   +      N
Sbjct: 151 LGQNYFTDYNTPAQQLLRA----ISASSNTGTGVLSVNITDLSQVQLSDYQLVVNDAATN 206

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
              ++  SDGT++      +       +  +  +   I +D +   +N+ S        A
Sbjct: 207 QVRLIRESDGTSMTLNWASNP--PAPPAGQIVVDGMTITVDNIANLANEDSFTLIPTRGA 264

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKD 325
                  +       L    R +    +              +G S+     FI+    +
Sbjct: 265 ARDFGMLISDPNLMALAAPVRTMASMSNSGSGQIALGTVFNTSGVSDQYSIDFISPTQFN 324

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
           + +                  N   + D  + S   + +     G      +    F  N
Sbjct: 325 VVDVTTGTTVSGPLPFTPNTDNVVQIPDATNPSYSIVLSGMPNTGDQFTAEYNQGGFGDN 384

Query: 386 FIFDPVAGI-------NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
                +AGI       N N TL +   + +  +    + + +     +V++    +   +
Sbjct: 385 RNGLLLAGIQQSQLFDNGNETLFDCYSDLLSNVGSQTNQAQNRAAAFEVLYKQAVDFQES 444

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             GVNL EE + L++ EQ+Y  + KL+  +++M+  L E +
Sbjct: 445 KSGVNLDEEGANLLRFEQAYAAAGKLMEVSNQMMHVLFEMM 485


>gi|289670507|ref|ZP_06491582.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 262

 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 70/254 (27%), Gaps = 8/254 (3%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              ++ F    + T  + +     D    S + G       +          V       
Sbjct: 10  STVNLAFTLPGNATAPTVTPFDPADDKTYSHSTGGINVYDSLGVSHVQTSYFVKTANPNE 69

Query: 291 DEMARVL------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            ++   +        +  +       +    G+   D            +   +  + QY
Sbjct: 70  WQVHNYVDGAAVGAPTTLQFSDTGALTTPANGIIAMDPFTPSTGAGVLNMQLNVSGSTQY 129

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +              N  ++     +   Y +  +K      ++       L    
Sbjct: 130 GEAFALRDTRQDGYASGKLNEISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   W E   S +      +      +         V+L E+L  +I  ++++  ++++
Sbjct: 190 NNM--WAESYTSGAARTGAPNTSDLGQVESGSLEASTVDLTEQLVNMIVAQRNFQANSQM 247

Query: 465 IMFTDKMLQTLLEG 478
           I   D++ QT++  
Sbjct: 248 ISTQDQVTQTIINI 261


>gi|292669794|ref|ZP_06603220.1| flagellar hook protein FlgE [Selenomonas noxia ATCC 43541]
 gi|292648591|gb|EFF66563.1| flagellar hook protein FlgE [Selenomonas noxia ATCC 43541]
          Length = 680

 Score = 85.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/418 (10%), Positives = 124/418 (29%), Gaps = 12/418 (2%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +       +  G   L     A  ++ +      N  +   S +  +L + +       
Sbjct: 275 INGSATTVINRTGATALTSGTYAFGDVFNISGKITNVVSSPPSDVVLTLGTDNNITPGTA 334

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   V           +T   +++  +   +    +  ++          V       T 
Sbjct: 335 VTIKVPKPNSFTYSVNDTYTGQLKITKVVGNTGSTVTTADGNS-----ATVGATPVSVTN 389

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +           D  ++ I+         +  + +++ T  GT++   V     + + ++
Sbjct: 390 AATPYTHTGSATDGTIKSITRESTYQHAGKTVSSVLLNTKSGTSIDGLVG--KTYAQNDT 447

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
           +  +  +     D +    +      KG+    +    +    +   + E          
Sbjct: 448 FYPSVATTIAVYDSLGAKHSVPVVFTKGENNKWVLSLGTGGDTY--TITEADGTTTTVAL 505

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K  +  +S        A       N                 +  S +      +    
Sbjct: 506 TKTDLTFDSTGAYTGGTASLNLTYTNGAAPQQVSLNLGAITQYAGTSTIAADSDGNAAGT 565

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     +   Y +   +      +A  N    L +   N   + E N S +  + 
Sbjct: 566 LASVDIDSSGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNL--YQESNNSGTRTIS 623

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             S +    ++ S      V++ ++ S +I  ++ +  ++K+I  +D+ML+TL+   +
Sbjct: 624 GASDIG-TELTTSALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 680



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/447 (7%), Positives = 82/447 (18%), Gaps = 23/447 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++       +       +   I  NI N +   +                          
Sbjct: 1   MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGAASPNGNIG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V               +++ + S     +      +  + +                  
Sbjct: 61  GVNPKQVGLGMSVASTDLIYTNGSVQQTGKNTDIAISRGDGLFVVKRGEQQFYTRNGAFS 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR---EVQKIRADADKEIELEISNLRR 165
              E      S  +  +  + N   +    + + +      K              NL  
Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVLAVGGDNTTKIRIPAGKSMEATSTVSASYTKNLNA 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                 V N  +K+   +      +       L    +      +        V ++   
Sbjct: 181 STPGYEVANVLVKYADGTSGTTTSYSATETGKLVLTMDNGRKIYLGSAAPAQTVGSAPTG 240

Query: 226 TLFETVPRDINFEKMNS------YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            L+ +   +I  +   +          + S+P  I+G   +    +              
Sbjct: 241 ALYSSTVSNITAKVGGTVDLDLAMDANNPSSPKEINGSATTVINRTGATALTSGTYAFGD 300

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
              +      +       +      D        V                       I 
Sbjct: 301 VFNISGKITNVVSSPPSDVVLTLGTDNNITPGTAVTIKVPKPNSFTYSVNDTYTGQLKIT 360

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                  +     DG S +          A  P              I       +   T
Sbjct: 361 KVVGNTGSTVTTADGNSATVGATPVSVTNAATPYTHTGSATDGTIKSITRESTYQHAGKT 420

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           +     N+      +            
Sbjct: 421 VSSVLLNTKSGTSIDGLVGKTYAQNDT 447


>gi|258622488|ref|ZP_05717510.1| Flagellar hook protein flgE [Vibrio mimicus VM573]
 gi|262173354|ref|ZP_06041031.1| flagellar hook protein FlgE [Vibrio mimicus MB-451]
 gi|258585188|gb|EEW09915.1| Flagellar hook protein flgE [Vibrio mimicus VM573]
 gi|261890712|gb|EEY36699.1| flagellar hook protein FlgE [Vibrio mimicus MB-451]
          Length = 398

 Score = 85.9 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 92/389 (23%), Gaps = 10/389 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           +   NN         + S   ++   +    G   + +  +      +     + +    
Sbjct: 18  NTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVASISQNFDKNGSITGTGRAMDMAI 77

Query: 153 DKEIELEISNLRRFL--SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           +        +    L  +   V N          + A       D   + +S  +G    
Sbjct: 78  NGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQGYSVDTNGELLSGSVG---- 133

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             +            T       + +             +P   +    S         G
Sbjct: 134 --DIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSFNSSYTTKVYDSLG 191

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
               + Q              ++        +       +                    
Sbjct: 192 NAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKTDGTLESPKGSYKVSFPAAGAE 251

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              I  ++  + Q+ +      +  +           +     +   Y +  ++      
Sbjct: 252 PLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYATYDNGESQRQGQVV 311

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A       L +   N   W +   S +  + +        ++        V+L  EL  
Sbjct: 312 LANFADPQGLSKV--NDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEGSNVDLTSELVS 369

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+  +++Y  + K I   DK+ Q L   +
Sbjct: 370 LMTAQRNYQANAKTISTGDKLTQALFNAI 398



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/400 (9%), Positives = 87/400 (21%), Gaps = 22/400 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  +++  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D                  ++    +   L  
Sbjct: 59  NFDKNGSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D   E++       +                ++N       +           ++  
Sbjct: 119 YSVDTNGELLSGSVGDIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N   + V          TVP     +       
Sbjct: 179 NSSYTTKVYDSLGNAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKTDGTLESPK 238

Query: 246 TSESNPIFIDGV-------------------VVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
            S        G                     VS+N  +    G++  +    + +V   
Sbjct: 239 GSYKVSFPAAGAEPLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYAT 298

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            +  +   +  +   +  DP   +  N      +         +    S           
Sbjct: 299 YDNGESQRQGQVVLANFADPQGLSKVNDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEG 358

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           +   L            N +  A      +    +     
Sbjct: 359 SNVDLTSELVSLMTAQRNYQANAKTISTGDKLTQALFNAI 398


>gi|56419762|ref|YP_147080.1| flagellar basal body rod protein FlgG [Geobacillus kaustophilus
           HTA426]
 gi|56379604|dbj|BAD75512.1| flagellar hook protein [Geobacillus kaustophilus HTA426]
          Length = 263

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +                +A    N  L +   N   + E   S +        
Sbjct: 152 SIGADGKVTIVDASGTLSTIGTIQLAKFANNDGLEKAGNNL--FRETTNSGTPTTGAPGA 209

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I         V+L EE + +I  ++ +  + ++I  +D++LQ L+   K
Sbjct: 210 NGTGTIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKK 263



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 32/152 (21%), Gaps = 27/152 (17%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------------TI 45
                    N   +   I  NI N +   + +  T+                        
Sbjct: 1   MYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAGRGGT 60

Query: 46  SPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
           +P+ V + +Q +    +     L      +        F  + +        NN      
Sbjct: 61  NPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDA-----SGNNRMYTRA 115

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                  + Y  N     L        +    
Sbjct: 116 GNFYLDSQGYIVNADGQYLLGVGNSRLQIPTD 147


>gi|331006033|ref|ZP_08329375.1| Flagellar hook protein flgE [gamma proteobacterium IMCC1989]
 gi|330420162|gb|EGG94486.1| Flagellar hook protein flgE [gamma proteobacterium IMCC1989]
          Length = 877

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/443 (9%), Positives = 117/443 (26%), Gaps = 11/443 (2%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +    + V   +   N  D  +   S+  G       F    + +++    +     Y 
Sbjct: 436 TTTGASSTVAITAVGANANDLGIATGSAVAGTDADAYDFSITVDGVASAADISLPVASYA 495

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S    +    +   ++  +    +    +     + S      +   A      ++    
Sbjct: 496 SYTAMAAALETAINADTNISGVSVTFDTDHFVITSVSTGTTSTVALTAVGADANDLGIAG 555

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
              S            T    + +   D     L   + +  ++      +      S  
Sbjct: 556 ATSSAGVSDITVGGIITLELDEGYSLTDNSGTPLFDNAPVEFVNNSFDPTSPETYNHSTS 615

Query: 225 TTLFETVPRDIN---------FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
            T+++++              ++  +  T  +              +   + P     A 
Sbjct: 616 VTVYDSLGNSHVMQQYFIKQPYDPSDPATFANHWEMAVQIDGQNVGDPVISAPTTATVAT 675

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
             +  +        L +   +   +  +++     +     +     +   +  +     
Sbjct: 676 YDLFFTANGTLNTALSDSLLISNWTPIDENGNEIGALGPLNVASGGSVPVAEPAINSNFE 735

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            ++  + Q  S+        + S        ++     +   Y +  N+      +A   
Sbjct: 736 ISMDDSTQVGSDFEVRTLDQNGSTTGRLVGIDVDDSGIIFARYTNGENQVLAQVALADFA 795

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L         W++   S    +          I         V+L E+L  LI  +
Sbjct: 796 NVQGLQS--DGDTAWVQTFESGEPIIGGPGTASLGLIQSGALEDSNVDLSEQLVNLIIAQ 853

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           +++  + K I   D + QT++  
Sbjct: 854 RNFQANAKTIETADTITQTIINL 876



 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 91/393 (23%), Gaps = 4/393 (1%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT---QRSENKNMF 63
           FN A +    A+        NI NA    +    T          + +   Q      + 
Sbjct: 3   FNVALSGIRAANSDLRVTGNNIANASTTGFKESRTEFGDIYSTSALGSGLNQPGSGVRVQ 62

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D         I                       +             E +  N ++  L
Sbjct: 63  DIAQQFGQGNISFTENSLDLSISGSGFFVTSFAGDQSFTRAGTFGLDQEGFIVNNTDARL 122

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                D++  +         +   I+  A   +++ ++   R     T     +     +
Sbjct: 123 QGFDADSSGNISGLIGDIQIQTTNIQPTATTGVDIALNVDSREPVIQTTGTRYLSSGGTA 182

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
             + + +  Q           +  +T   +N    V + +  +               S 
Sbjct: 183 AANENGYTAQSLDFTNPSGATVTFNTSASDNTFDTVSSLNSLSGVTATSTATATLSTWSA 242

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPK-GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            +    N   +    +S    + +     + A        + +     D +        +
Sbjct: 243 GLNVTINGASLTNTGISQATATEITNLPGLTATYDAGAGTIAVVSTIGDLVFGAAGSGGA 302

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           ++      S  +P     DG  DL       +S T        +               +
Sbjct: 303 DQLLTVTGSSGLPQTLEFDGAGDLVAAGNLAVSGTFTGIAATAALNQSSSGRFIAGASTI 362

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
               + AG  D           +     +   N
Sbjct: 363 PLDTSGAGPTDYDFSITIDGLASNADISLPASN 395


>gi|224825777|ref|ZP_03698881.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum
           2002]
 gi|224602001|gb|EEG08180.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum
           2002]
          Length = 399

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 77/250 (30%), Gaps = 2/250 (0%)

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
               +++       T    ++P   +G  VS+   S   K  +        +        
Sbjct: 152 QYVGNLSSGWTTPATAFDPADPTTFNGSSVSTVYDSLGEKHTLTQYFVKNGTNDVTVHFG 211

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD          +     A  S  +     A  +          +        Q+  + +
Sbjct: 212 LDGSLLADTADLAFDSNGALTSSALASGAAALALGTPTGAAALAVKLDYTGTTQFAGDTT 271

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              + G+          +L    D++  Y +   +      +A       L+  +     
Sbjct: 272 TTVNSGNGYASGALTGVSLQDNGDILATYSNGQKQAVGTIALANFPNEDGLVPVSA--TS 329

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S +  L      +   +S        V++  EL  L+  +++Y  + K+I    
Sbjct: 330 WVDSPASGTALLSAPGSGLAGTLSAGSLEQSNVDMTAELVNLMSAQRNYQANTKVISTEG 389

Query: 470 KMLQTLLEGV 479
           +++Q L++ V
Sbjct: 390 QVIQALMQAV 399



 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/394 (9%), Positives = 86/394 (21%), Gaps = 6/394 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
               A +  N  + Q  SI  NI N+    +       + +            +     +
Sbjct: 2   SLEIALSGINAVNSQLGSISNNIANSGTYGFKSSRANFSATYAGTQATGVEVASN---TQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +      +   R L +    +      D+  +     +       +    +        
Sbjct: 59  SIGRSGGTVTTGRALDAAIQGRGFFVTRDNAGSVAYTRVGIFNTDKDGVLVD--SFGRHV 116

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                          +  ++         +    +  +    S  T    A      +  
Sbjct: 117 QGYAAVSAASGGARGALGDITVPTGQIAAKASDTLQYVGNLSSGWTTPATAFDPADPTTF 176

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +        D L +K   +         N+  V +  DG+ L +T     +     + + 
Sbjct: 177 NGSSVSTVYDSLGEKH-TLTQYFVKNGTNDVTVHFGLDGSLLADTADLAFDSNGALTSSA 235

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +        G    +   +               +      N     A   +      D
Sbjct: 236 LASGAAALALGTPTGAAALAVKLDYTGTTQFAGDTTTTVNSGNGYASGALTGVSLQDNGD 295

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +A  S           + +  N+                S  + L   GS     L   
Sbjct: 296 ILATYSNGQKQAVGTIALANFPNEDGLVPVSATSWVDSPASGTALLSAPGSGLAGTLSAG 355

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                  D+     +  +    +     + +   
Sbjct: 356 SLEQSNVDMTAELVNLMSAQRNYQANTKVISTEG 389


>gi|15615012|ref|NP_243315.1| flagellar basal body rod protein FlgG [Bacillus halodurans C-125]
 gi|10175069|dbj|BAB06168.1| flagellar hook protein [Bacillus halodurans C-125]
          Length = 263

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 2/129 (1%)

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            +G  ++        ++     +     D   +      +        L +   N   +L
Sbjct: 137 TNGNPITVPTTAQSFSIGQDGTVTYIDEDGDLQEAGMVRLVNFANPEGLAKAGANL--YL 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S +             I         V+L EE + +I  ++ +  + ++I  +D++
Sbjct: 195 VSANSGAPLFTSAGNGGTGDIIAGTLEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEI 254

Query: 472 LQTLLEGVK 480
           LQ L+   +
Sbjct: 255 LQELVNLKR 263



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/202 (7%), Positives = 37/202 (18%), Gaps = 19/202 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQRSE 58
           +L       +   N   +   I  NI N +   Y +  T             T       
Sbjct: 1   MLRSMYSGISGMRNFQTKLDVIGNNIANVNTFGYKKGRTTFQDMVSQQLAGATAPGANRG 60

Query: 59  NK---------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          ++             +        +            
Sbjct: 61  GVNPRQVGLGMQLASIDNVHTQGSLQNTNRELDLGISGDGFFQVQDGDTFYYTRSGNFYF 120

Query: 110 SLESYSKNLSEDILGK------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             +    N     L        TV   A+      + +   + +     +  +   ++  
Sbjct: 121 DQQGTIVNAQGLRLMDTNGNPITVPTTAQSFSIGQDGTVTYIDEDGDLQEAGMVRLVNFA 180

Query: 164 RRFLSELTVVNDAIKFKTASKH 185
                     N  +    +   
Sbjct: 181 NPEGLAKAGANLYLVSANSGAP 202


>gi|294500931|ref|YP_003564631.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551]
 gi|294350868|gb|ADE71197.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551]
          Length = 264

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 60/222 (27%), Gaps = 2/222 (0%)

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           VS     A   G  +  +  +   +      +D +        + +      S +   + 
Sbjct: 45  VSQQVAGATAPGANRGGVNAKQVGLGSKIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVV 104

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                          +  +  +             G         +    A     I   
Sbjct: 105 NDGKSDYYTRAGNFYLDSSGNLVTGDGLYVQKTGGGNINIPSTSKSYSIGADGKVNIIDA 164

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
             +   N     +A    N  L +   N         S +  +          +  S   
Sbjct: 165 NGNITPNTPTIELAKFANNEGLEKAGGNLFAK--SVNSGNPLVGNPGASGTGTLVSSALE 222

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 223 MSNVDLSEEFTDMIVAQRGFQANTRIITTSDEILQELVNLKR 264



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/175 (8%), Positives = 35/175 (20%), Gaps = 14/175 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVTVV 53
           +L       +   N   +   +  NI N +   Y +  T                     
Sbjct: 1   MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRD 109
              ++   +  K+    +                    +     +   +           
Sbjct: 61  GVNAKQVGLGSKIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVNDGKSDYYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF-NTSAREVQKIRADADKEIELEISNL 163
                        + KT   N      +   +   + +    DA+  I      +
Sbjct: 121 DSSGNLVTGDGLYVQKTGGGNINIPSTSKSYSIGADGKVNIIDANGNITPNTPTI 175


>gi|256830199|ref|YP_003158927.1| hypothetical protein Dbac_2432 [Desulfomicrobium baculatum DSM
           4028]
 gi|256579375|gb|ACU90511.1| protein of unknown function DUF1078 domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 562

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/429 (10%), Positives = 100/429 (23%), Gaps = 14/429 (3%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM----SADDHYNNSPTHYISKLRDSLESYSKNL 118
            +    A      Q         + + +            S    I  +  S E  S + 
Sbjct: 137 ANTSAAASGDTTAQATTGVQILGVPQDVKLENFQSPPQATSRVDLILNVDSSSEDKSVSP 196

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-------ISNLRRFLSELT 171
           ++         +A         S      I+   +             ++N+    +   
Sbjct: 197 TDPFTALFDTYDATAAEPIGEASYAYQTTIKVYDENGSSHNMTVYMDPVANVEVTGAAAG 256

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
                         D  DF    D     +              +M  +T +  T    +
Sbjct: 257 KRYWEYIIAVPPGEDNRDFWGAGDEKRGILMSGTLTFNAAGELENMSAFTVNDLTADPEL 316

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P        +       +          ++  G        K +             +  
Sbjct: 317 PASWVPANFSQNGYPICTANFLGAANGSTTGSGILAESENTKNIEINFGVRNKTSSWEPG 376

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   +  +        +      +  G     N         +        + +  
Sbjct: 377 PAIPPAAATGQDNLGDYPTIDTSGATPVLVGSLGAINGFASTEISALSSTNYSTGSTTIF 436

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +     +  FL N+  +     +   Y +          +A  N N  L     N     
Sbjct: 437 QAQDGYTAGFLQNIS-VDRDGVITGRYSNGQVLQLFAVTLATFNNNYALYREGGNLFS-- 493

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S      + +      I+ +      V+L  E   +I  E+ +  ++K I   D+M
Sbjct: 494 ETRSSGPPITGLANTGGKGSIASNSLEQSNVDLATEFVKMITTEKGFQANSKTITTVDQM 553

Query: 472 LQTLLEGVK 480
           L  L++  +
Sbjct: 554 LTVLIQLKR 562



 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 104/439 (23%), Gaps = 21/439 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN 49
           M L A      +      +    I  NI N     +                    S + 
Sbjct: 1   MGLSASLYSGTSGLKAHGEDMTVIGNNISNVSTIGFKGSRMYFEDALSQQITTASGSGQV 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
              V+  +   +     L + + A         F      M +      +        R 
Sbjct: 61  GRGVSVGTVMGDFSQGSLESTTEATDLAIGGNGFF-----MVSPAGQEVNYYTRAGNFRF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVV----QNFNTSAREVQKIRADADKEIELEISNLRR 165
             E Y  +     L    +  A             +   VQ +    D ++E   S  + 
Sbjct: 116 DEEGYLVDPRGYRLQGWEVQQANTSAAASGDTTAQATTGVQILGVPQDVKLENFQSPPQA 175

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                 ++N     +  S      F    D      +E IG          + VY  +G+
Sbjct: 176 TSRVDLILNVDSSSEDKSVSPTDPFTALFDTYDATAAEPIG-EASYAYQTTIKVYDENGS 234

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           +   TV  D       +     +    +I  V    +       G  K  + +  ++   
Sbjct: 235 SHNMTVYMDPVANVEVTGAAAGKRYWEYIIAVPPGEDNRDFWGAGDEKRGILMSGTLTFN 294

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
              +L+ M+   +   +    +  +            I   +       S T        
Sbjct: 295 AAGELENMSAFTVNDLTADPELPASWVPANFSQNGYPICTANFLGAANGSTTGSGILAES 354

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   +     V  K        A  P       +  +   I    A      +L     
Sbjct: 355 ENTKNIEINFGVRNKTSSWEPGPAIPPAAATGQDNLGDYPTIDTSGATPVLVGSLGAING 414

Query: 406 NSIGWLEKNRSDSHDLHMK 424
            +   +    S ++     
Sbjct: 415 FASTEISALSSTNYSTGST 433


>gi|134300225|ref|YP_001113721.1| hypothetical protein Dred_2386 [Desulfotomaculum reducens MI-1]
 gi|134052925|gb|ABO50896.1| protein of unknown function DUF1078 domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 266

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 44/171 (25%), Gaps = 2/171 (1%)

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                 V      D I+         I+          S+   L   G +  +       
Sbjct: 96  GQGFFKVTPATGDDDIEYYTRDGSFYITTIDDETVLVNSSGYKLVWDGELDAETYKAYSV 155

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                       D   +      +        L+    N   ++    S      +  + 
Sbjct: 156 DEKGTVWGQRIEDGKTEEVGNIELFTFPAPSGLVSKGSNL--YMATEASGEETSGVPGED 213

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               I   Y     V+L  E+  +I+ +++Y  +++ I   D+M       
Sbjct: 214 GIGSIYSGYLERSNVDLATEMIGMIEAQRAYAANSRTIQTADEMWDRANNL 264



 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 23/169 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++   +   +       +  +I  NI N +   + +  T                     
Sbjct: 2   IIKTLSSGASGMRAHQLKLDTIGNNIANINTTAFKKNRTDFGEIVRQAIGEDGIPAANDP 61

Query: 45  --ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V+            L      +      Q F  +      DD    +   
Sbjct: 62  RPEGGSGVRIVSLARVIDQ---GDLIQTGRDLDLAIEGQGFFKVTPATGDDDIEYYTRDG 118

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                    E+   N S   L      +AE            V   R +
Sbjct: 119 SFYITTIDDETVLVNSSGYKLVWDGELDAETYKAYSVDEKGTVWGQRIE 167


>gi|291520178|emb|CBK75399.1| Flagellar hook-associated protein [Butyrivibrio fibrisolvens 16/4]
          Length = 396

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 96/334 (28%), Gaps = 10/334 (2%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
            E++  R  +                + T + +      A      +F D  +    +++
Sbjct: 67  SEIKDPRDPSKNYYYPVFDTTNVSAEKDTDIGEIKALLMARGTGWTNFTDFYNENGTRLT 126

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
                  I  +         D  TL   +   IN       TV S          V    
Sbjct: 127 AEDYQKGIANSIMMNSEAELD--TLLHQLVITINDLFSPLTTVASAYEGATTATYVNDKG 184

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
           +   V   K++ L +    V    +    E+             +  ++   P +     
Sbjct: 185 ETVQVDASKLRILDEKNCPVGSDLKLPPRELFVRNGCERYTLTEVQLDNMAEPVMMYLYN 244

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
            +DL+N       + I +N       S+L               N       +       
Sbjct: 245 EEDLENDSTLYTMKNISINEDMIKQESYLPHLKFA--------DNTEAVDHQLGTNLSLI 296

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                F+      T      +    IG +    +         +     I  S    +GV
Sbjct: 297 WTKQEFNLNPSDTTPCGFSGFYVKWIGEIGNTGNVYRSTAQSLEGTKEEIEFSRQGVIGV 356

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +  EEL+ +IK + +YN +++ I   ++M++ L+
Sbjct: 357 SSDEELTTMIKYQSAYNAASRYINVVNEMIEHLV 390


>gi|255654319|ref|ZP_05399728.1| putative flagellar hook-associated protein [Clostridium difficile
           QCD-23m63]
          Length = 125

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
            L ++ N A +  N+  +   +I  NI N D + Y R+ T    +               
Sbjct: 3   GLFSILNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRG 62

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V V        + +D    A +   G+      +    E +  ++  +   +  I
Sbjct: 63  QLGTGVHVTDVTRARNSFYDYQFRAEAHKYGKTVSKYDYYNTIETIL-NEPSDYGISAGI 121

Query: 105 SKLR 108
               
Sbjct: 122 DVFF 125


>gi|89895710|ref|YP_519197.1| hypothetical protein DSY2964 [Desulfitobacterium hafniense Y51]
 gi|89335158|dbj|BAE84753.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 383

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 89/272 (32%), Gaps = 6/272 (2%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
              ++++  +     G  +   +          S T   ES   +     +  N G   P
Sbjct: 117 AFTQDDDGTLTEPGTGAKVMGHMYGMEKSVDTMSTTTEDESKIDWTTLEAIKFNLGENPP 176

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
               +A     D+ V      +     ++  + +   P     +N  G            
Sbjct: 177 YVLSEATKIPPDAWVKSGDEWVYSNPSLIGVNATTTAPTGAVFDNTRGTITVTTDPTKPA 236

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 + TI       ++ + +     ++    ++V +      + ++   S ++    
Sbjct: 237 DDTGIYTFTITNLDGEYADGTDIP----LATLTSFSVDSKGAITGVYSNGEASASRVIGQ 292

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A  + +  LL    +       N S    +    +    +I  S      V+L +E 
Sbjct: 293 VAIASFSNDAGLLNLGNSFYA--ASNNSGQASIGGAGEDGRGNIVPSTVEMSNVDLSQEF 350

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I  ++ +  ++++I  +D +LQ L++  +
Sbjct: 351 TDMIVTQRGFQANSRVITVSDSLLQELIDLKR 382



 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 68/304 (22%), Gaps = 24/304 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +   N   +   I  NI N +   + R     +                  
Sbjct: 1   MLRSLYSAISGLKNHQIKMDVIGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQG 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                  +              +      +   +          
Sbjct: 61  GTNPAQIGLGSMVSSIDQIMTPGSSQSTGKDTDMMIQGKGFFVLQNNGETVYSRAGAFTQ 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +               +   E+ V   +T+  +  KI     + I+  +         
Sbjct: 121 DDDGTLTEPGTGAKVMGHMYGMEKSVDTMSTTTEDESKIDWTTLEAIKFNLGE------- 173

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               N       A+K     ++   D  +     +IG++         V   + GT    
Sbjct: 174 ----NPPYVLSEATKIPPDAWVKSGDEWVYSNPSLIGVNATTTAPTGAVFDNTRGTITVT 229

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           T P     +        +  +  + DG  +     ++       A+  +  +        
Sbjct: 230 TDPTKPADDTGIYTFTITNLDGEYADGTDIPLATLTSFSVDSKGAITGVYSNGEASASRV 289

Query: 290 LDEM 293
           + ++
Sbjct: 290 IGQV 293


>gi|258625234|ref|ZP_05720146.1| Flagellar hook protein flgE [Vibrio mimicus VM603]
 gi|258582481|gb|EEW07318.1| Flagellar hook protein flgE [Vibrio mimicus VM603]
          Length = 398

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 92/389 (23%), Gaps = 10/389 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           +   NN         + S   ++   +    G   + +  +      +     + +    
Sbjct: 18  NTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVASISQNFDKNGSITGTGRAMDMAI 77

Query: 153 DKEIELEISNLRRFL--SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           +        +    L  +   V N          + A       D   + +S  +G    
Sbjct: 78  NGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQGYSVDTNGELLSGSVG---- 133

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             +            T       + +             +P   +    S         G
Sbjct: 134 --DIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSFNSSYTTKVYDSLG 191

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
               + Q              ++        +       +                    
Sbjct: 192 NAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKSDGTLESPKGSYKVSFPAAGAE 251

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              I  ++  + Q+ +      +  +           +     +   Y +  ++      
Sbjct: 252 PLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYATYDNGESQRQGQVV 311

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A       L +   N   W +   S +  + +        ++        V+L  EL  
Sbjct: 312 LANFADPQGLSKV--NDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEGSNVDLTSELVS 369

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L+  +++Y  + K I   DK+ Q L   +
Sbjct: 370 LMTAQRNYQANAKTISTGDKLTQALFNAI 398



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/400 (9%), Positives = 94/400 (23%), Gaps = 22/400 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  +++  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D                  ++    +   L  
Sbjct: 59  NFDKNGSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D   E++       +                ++N       +           ++  
Sbjct: 119 YSVDTNGELLSGSVGDIKVSTSSLEAKATNKIDFVANFDASAKVVDQTQYPFDPNNSNSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV---------------YTSDGTTLFET 230
           ++       D L    +     +    N   + V               + SDGT     
Sbjct: 179 NSSYTTKVYDSLGNAHNVTQYFTKTADNTWKVSVQVDGSKKPVSTVPVKFKSDGTLESPK 238

Query: 231 VPRDINFEKMNSYTVTSE----SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
               ++F    +  +  +     +  F     VS+N  +    G++  +    + +V   
Sbjct: 239 GSYKVSFPAAGAEPLNIDISLKGSTQFGAAFGVSTNNANGYTSGELTGVRVEDNGMVYAT 298

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            +  +   +  +   +  DP   +  N      +         +    S           
Sbjct: 299 YDNGESQRQGQVVLANFADPQGLSKVNDTAWTQSFSSGAPIMGIPGTGSLGELAPGSLEG 358

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           +   L            N +  A      +    +     
Sbjct: 359 SNVDLTSELVSLMTAQRNYQANAKTISTGDKLTQALFNAI 398


>gi|90415318|ref|ZP_01223252.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207]
 gi|90332641|gb|EAS47811.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207]
          Length = 944

 Score = 85.5 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/403 (12%), Positives = 109/403 (27%), Gaps = 17/403 (4%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
            +  +   + T       D+        +E       I+    +VQ   +    V  +R 
Sbjct: 542 MSVSYAEGAFTVSSGTTGDTSSLALSGPTELAQALLGINVLGNIVQPETSQIYNVPAVRG 601

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            A     +  + +     +   VN      T         ++  + L    +    +   
Sbjct: 602 QASTPAIVTGNPMGIDPRKSFSVNSDNSSMTVIIDSISAQIELTEGLYSIGTFTEHLQET 661

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
           +    D +  T  G T+      +      ++ T  S           + +         
Sbjct: 662 INLMADSLGRTVSGITVDYQDATETLRITGSTTTDNSFIQVAGHADWGLENIDPGFGEAS 721

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI---------------AGNSENVP 315
               L         ++  Q  +          E D                   ++    
Sbjct: 722 TFIELFPDTSGTSTVYVTQTKDGDWTETTDGGEFDSNDVPYWTPIFLDKGELTFDTSGSL 781

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
              +A    +        I+     + Q+ S  S L    + + +      N+     ++
Sbjct: 782 VSPVAGVKLESAGITGGDITLNYDNSTQFNSPFSVLSQSQNGAPEGDLVGVNIGDDGLVV 841

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
             Y +   K+     +A   T   L +       +   + S   +L       F  I   
Sbjct: 842 ASYSNGSQKSLGKIILANFATPKGLRQVGD--TSYYATSVSGDANLGEPGAAGFGTIRAG 899

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 V+L  EL  LI  ++++  + K I  +  + QT+++ 
Sbjct: 900 ARERSNVDLTAELVDLITAQRNFQANAKAIETSSSLTQTIIQI 942



 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 60/257 (23%), Gaps = 16/257 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55
            F  +    N A+ Q A    NI N+    + R DT              S      V+ 
Sbjct: 2   SFYTSLTGLNAATTQLAVTSNNIANSGTGGFKRSDTDFGDIFATSPLEKASSVVGRGVSL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +  ++      +   ++++        F  L+                      + ++  
Sbjct: 62  KEVSQEFSQGNIEFSANSLDLAITGDGFFPLE------SSDGTKIYTRNGAFMLNEQNQM 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            N +   L    +D+  +     + SA  + +               L        +   
Sbjct: 116 VNSAGQALQSLPVDSTNKADFGVDPSALTIPRATVSEFLPTTEVELGLNLPSEVTPITAT 175

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
               K  + H               ++ I  + T                 + +      
Sbjct: 176 FNPDKPDTYHKTTSLTVYGTSGSANLATIYYVKTANATAETPFNKWQTYVYVDDQEVDTA 235

Query: 236 NFEKMNSYTVTSESNPI 252
             +  ++       N  
Sbjct: 236 LIQSSDTTGDQYFINKY 252


>gi|148926818|ref|ZP_01810497.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844543|gb|EDK21650.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 865

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N+      + + +  +   +             AD ++ I++ ++    F       
Sbjct: 493 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 552

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230
              +     +        D +++     +      T+  N+    ++ +    L    + 
Sbjct: 553 QSTVPPNAINGAGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 612

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +       S  +    +      + V   + S    G  +  + IR           
Sbjct: 613 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 672

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +    +++G+    +  +  S     +  +       N+  +    T   N    S+ S 
Sbjct: 673 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 732

Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               G  +  +       +   +    +++  + +          +A +  N  L E   
Sbjct: 733 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 792

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S +  +          +  S      V+L   L+ LI +++ Y  ++K I
Sbjct: 793 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 850

Query: 466 MFTDKMLQTLLEGVK 480
             +D+MLQTL++  +
Sbjct: 851 STSDQMLQTLIQLKQ 865



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/431 (6%), Positives = 90/431 (20%), Gaps = 43/431 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ + G  L     + I          T  +N + ++    +  Q         
Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                  D  +   + Q  ++    I              +         +K+ D     
Sbjct: 290 ANQKVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +++          N + +    + + +    V +        N+  +        +   
Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNNNGNGQAGTPTINKNG 407

Query: 393 GINTNVTLLEY 403
                 T + +
Sbjct: 408 SSLWTATNIAF 418


>gi|109947758|ref|YP_664986.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba]
 gi|109714979|emb|CAJ99987.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba]
          Length = 718

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +A+        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NANSGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +               ++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASVGVSINQYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++     P        +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGAPASSSKFTHATHATSIDVIDSLGTKHTMRIEFYRSGGAEWNFRVIVPEPAEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/469 (9%), Positives = 103/469 (21%), Gaps = 43/469 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL-EI 160
               +     +         ++   V +  +   +  +T A +V       +  I+   +
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGNDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN--NNDMV 218
              R         N                          I+ +   ST +     +   
Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLAQVAEDMGS 235

Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           +Y  DG  L             + + +     ++E++ + ++GV +S    SAV +    
Sbjct: 236 LYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
              +   + V         +    +   +  +           +  A      +      
Sbjct: 296 VAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387
                  +  +  +P+        ++          N+       D       S   +  
Sbjct: 356 DVTAFKYSYTHSISPNANSGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASVGVSIN 415

Query: 388 FDPVAGIN---TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
              +  IN      T+ E     +     +   ++ L   +    N  S
Sbjct: 416 QYGMFEINNKDNKNTIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTAS 464


>gi|83309603|ref|YP_419867.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1]
 gi|82944444|dbj|BAE49308.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1]
          Length = 843

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 104/400 (26%), Gaps = 10/400 (2%)

Query: 81  QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
            S    ++    +     +    +     SL   S+   +     +    A +      T
Sbjct: 454 TSTAPYQDQRGVNPPSGAASMDIVDNSTPSLVYASQGRVDFTASSSADVQALDTKSFTIT 513

Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200
                  +  D    I   +          T +       T       +  +  +     
Sbjct: 514 IGGYDLNVYFDTTGTISPTVGKEVVINLNNTNLTSGSDVATLVAQALRNPKNWDENTNGG 573

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
           I+    +  +           S    + +       F   N  T  ++S        + S
Sbjct: 574 IAATKTVVALGGKLPLFRANGSTLEIVQQQGGSTAKFSMANMGTTVTQSQTRNWSSGIPS 633

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
            +  +          +    +       +   + ++ +   +    +             
Sbjct: 634 VDTVNGEFYLNAITQVNPAITFNGDGTPKTVNVGKMAVNWANGAQSMTLVPNGTGADQRI 693

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
           +                     Q            + +K   ++  ++     +   + +
Sbjct: 694 NWFVGNT--------SQADGMTQLGGTYQLAYLTQNGAKFGNFSGVSVGTDGVVTALFDN 745

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
              +     PVA       L     N   W+E N S S+ L   +      +  +     
Sbjct: 746 GVRRPVFQIPVATFTNPNGLESLTGN--SWIETNTSGSYTLRQANNAGAGSVQSASLEAS 803

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++  E + +I  +++Y+ + K+I   D+ML  L++  +
Sbjct: 804 TVDIGSEFTTMIITQRAYSAAAKIITTADQMLDELVQIKR 843



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/447 (10%), Positives = 107/447 (23%), Gaps = 20/447 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54
           MSL        +   + S    +I  NI N +   Y                    +   
Sbjct: 1   MSLYGALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTTYSPGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSL 111
            +S+ +   D    L A +++       Q    +          N           +   
Sbjct: 61  VQSKPRAAIDSQGLLQATTNSTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDK 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E Y +N+S   +    +      V    T           A K+ +     + + +    
Sbjct: 121 EGYLQNVSGFYVQGWPLQPTNNNVLAKPTELTVDGNTYMKAYKQADGTFHYVNQNIINPQ 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
                   K+ +        DQ   +    +   G +     +     Y      +++++
Sbjct: 181 ET------KSLNLKTIGGTADQTTQIKMGANLPSGDTIYNPASTSSSGYHQTSVLIYDSL 234

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
               NF    + T +++ +          ++  + V +    AL                
Sbjct: 235 GDTHNFNVNWTKTNSNQWDVETKSNFYSVASTLTDVKQNSTAALKIY--GAAAGNTGNGI 292

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   + +           +P   + + +      L  G    I       S  +  
Sbjct: 293 TTLVTSASATNMGYFAGTGVIAMPQFTLGNPLLTAQRALPTGSILNISGASGTASTNNGD 352

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV---TLLEYARNSI 408
               S        V  +A    +     +       F    G   N    T       + 
Sbjct: 353 WYVSSTVATSPTIVDTVATAAAIEIGGANKTYTAAAFAANLGGLGNAIDFTGDAAYSQTD 412

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISES 435
             +      S+ L   +   +  +S  
Sbjct: 413 YAVGDYIKVSNSLSTTNNTGYYQVSSK 439


>gi|75760642|ref|ZP_00740670.1| Flagellar hook-associated protein 1 [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491856|gb|EAO55044.1| Flagellar hook-associated protein 1 [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 208

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 14/178 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PE 48
           M L   +N   +    A     +  +N+ N     YVR+                     
Sbjct: 1   MRLSD-YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGY 59

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V  +        +  K  +   S +     + S  +  E M      N S +  +    
Sbjct: 60  GVQTLGVDRITDEVKTKQFNDQLSQLSYYNYMNSTLSRVESMVGTTGKN-SLSSLMDGFF 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
           ++    +KN  +     T+I    +     N  A+ +  + A   ++++  +  L R 
Sbjct: 119 NAFREVAKNPEQPNYYDTLISETGKFTSQVNRLAKNLDTVEAQTAEDMKRMLMKLTRL 176


>gi|86152379|ref|ZP_01070589.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85840676|gb|EAQ57928.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 854

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P   N   E    +I   +  +     +   P                  +S     +  
Sbjct: 654 PAEINATGEGPNNIIVGSARFNNDGSLANYSPKTINFSPNNGAAPNQQIKLSFGTSGSND 713

Query: 344 YRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              + +        +     +         +    +++  + +          +A +  N
Sbjct: 714 GLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN 773

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L E   N   +     S +  +          +  S      V+L   L+ LI +++ 
Sbjct: 774 SGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRG 831

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y  ++K I  +D+MLQTL++  +
Sbjct: 832 YQANSKTISTSDQMLQTLIQLKQ 854



 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/426 (7%), Positives = 85/426 (19%), Gaps = 42/426 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I---SNLRRFLSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVR 212
           +   +NL   LS  T         +    +  D      +   +     +    +    +
Sbjct: 173 VAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++   G  L     + I     ++   T ++  + +      +NQ   +  G  
Sbjct: 233 GVDCAALFNGKGDGLNLRDGQGIWVSYTDAKFSTFKAPNVNVFDPNSKTNQTGVIFWGDK 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              + +  ++  +     D  +      +        +                 +    
Sbjct: 293 DNKVILDITLNGVHIENKDIQSLDQAIEYINTFTTPTD----TRPGTGVKAVRKADGSGI 348

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               T             L    + +     N+   A   +         N N  +    
Sbjct: 349 EFINTNADGTTDNMKNIKLTVNNANTAGERQNLTYHAQNDNFTAAMPGGKNGNSAWIQGG 408

Query: 393 GINTNV 398
                 
Sbjct: 409 ANVNGN 414


>gi|315125109|ref|YP_004067113.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018831|gb|ADT66924.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 855

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P   N   E    +I   +  +     +   P                  +S     +  
Sbjct: 655 PAEINATGEGPNNIIVGSARFNNDGSLANYSPKTINFSPNNGAAPNQQIKLSFGTSGSND 714

Query: 344 YRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              + +        +     +         +    +++  + +          +A +  N
Sbjct: 715 GLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN 774

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L E   N   +     S +  +          +  S      V+L   L+ LI +++ 
Sbjct: 775 SGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRG 832

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y  ++K I  +D+MLQTL++  +
Sbjct: 833 YQANSKTISTSDQMLQTLIQLKQ 855



 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/426 (6%), Positives = 91/426 (21%), Gaps = 38/426 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I---SNLRRFLSELTVVNDAIKFKTASKHDAHD----FLDQRDVLLQKISEIIGISTIVR 212
           +   +NL   LS  T         +    +  D      +   +     +    +    +
Sbjct: 173 VAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++   G  L     + I     ++   T ++  + +      +NQ   +  G  
Sbjct: 233 GVDCAALFNGKGDGLNLRDGQGIWVSYTDAKFSTFKAPNVNVFDPNSKTNQTGVIFWGDK 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              + +  ++  +     D  +      +        ++    G+           +   
Sbjct: 293 DNKVILDITLNGVHIENKDIQSLDQAIEYINTFTTPTDTRPGTGVKAVRKADGSGIEFIN 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             ++    N +         +     +   ++ +N      +     +  +         
Sbjct: 353 TNADGTTDNMKNIKLTVNNANTAGERQNLTYHAQNDNFTAAMPGGGKNGNSAWIQGGANV 412

Query: 393 GINTNV 398
             N   
Sbjct: 413 NGNAES 418


>gi|91224199|ref|ZP_01259462.1| flagellar hook protein E [Vibrio alginolyticus 12G01]
 gi|269965644|ref|ZP_06179757.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B]
 gi|91191110|gb|EAS77376.1| flagellar hook protein E [Vibrio alginolyticus 12G01]
 gi|269829712|gb|EEZ83948.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B]
          Length = 398

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/395 (9%), Positives = 93/395 (23%), Gaps = 2/395 (0%)

Query: 85  ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
           AL  + + +   N    +  +      +      S    G          +         
Sbjct: 6   ALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVYNGMQPGGVEVASISQNFDKDGS 65

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +       D  I      + +      +   +  F T   +        +       S  
Sbjct: 66  ITGTGRAMDLAINGGGFFVTKDNMGQMLYTRSGVFSTDKNNFVTANSGAKLQGYSVDSNN 125

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             ++  V N        +   T       + +          +  NP        S    
Sbjct: 126 NLMTGSVGNIQVSTSSLNAKATDSLDFVANFDASASVIDKAVTPFNPKDPSSFNSSYTTK 185

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                G    + Q              ++        +       +          +   
Sbjct: 186 VYDSLGNSHTVTQYFTKTASNSWEVNVQVDGGTTPVATVPVTFGKDGSLSAPTAPFNVSF 245

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                    +   +  + Q+ +      +  +           + G   +   Y +  ++
Sbjct: 246 PAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGYTSGELAGVRVEGNGMVYATYTNGQSQ 305

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L +   +   W +   S +  + +        ++        V+L
Sbjct: 306 LQGQVVLADFANTQGLAKV--SGTSWTQSFSSGAPIMGVPGSGTMGDLTPGALEGSNVDL 363

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             EL  L+  +++Y  + K I  +DK+ Q L   V
Sbjct: 364 TSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/393 (11%), Positives = 91/393 (23%), Gaps = 7/393 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T  +     +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 S  G  R +             D+                 ++    S   L  
Sbjct: 59  NFDKDGSITGTGRAMDLAINGGGFFVTKDNMGQMLYTRSGVFSTDKNNFVTANSGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   ++     + +           +    ++N     S +         K  S  
Sbjct: 119 YSVDSNNNLMTGSVGNIQVSTSSLNAKATDSLDFVANFDASASVIDKAVTPFNPKDPSSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N+ ++ V    GTT   TVP     +   S   
Sbjct: 179 NSSYTTKVYDSLGNSHTVTQYFTKTASNSWEVNVQVDGGTTPVATVPVTFGKDGSLSAPT 238

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
              +      G    S   +     +  A       V     N         +       
Sbjct: 239 APFNVSFPAAGANAMSVDINLKGSTQFGAAF----GVSTNSPNGYTSGELAGVRVEGNGM 294

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  +     L     + D  N               + S    +   GS +   L   
Sbjct: 295 VYATYTNGQSQLQGQVVLADFANTQGLAKVSGTSWTQSFSSGAPIMGVPGSGTMGDLTPG 354

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  DL +           +   A   +  
Sbjct: 355 ALEGSNVDLTSELVALMTAQRNYQANAKTISTS 387


>gi|291276324|ref|YP_003516096.1| flagellar hook subunit protein [Helicobacter mustelae 12198]
 gi|290963518|emb|CBG39349.1| flagellar hook subunit protein [Helicobacter mustelae 12198]
          Length = 705

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/441 (9%), Positives = 112/441 (25%), Gaps = 4/441 (0%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               T       + +  +      + +             +   +    M    +  N  
Sbjct: 269 RISFTNDSAASGISSVVAAQNA-INALKQKTGVEAFVDNGMLRLQNKNNMDGNAEVKNIR 327

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T   +    +      +++      T   + +     F T+      I+ DA+   +  
Sbjct: 328 ITADGTGAFANFIEGDSDITAFRYRYTTSASPDSGTGQFRTTEDLRALIQYDANLIKDPS 387

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +      S     N     +  +K +  +     ++ +   S     + ++  +    +
Sbjct: 388 QAYTDSTASVSVKFNKYGMLEIQNKDNGDELKQDLNIFVSGYSSENVTNNVLFKDTMKGL 447

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T               F      T     + +    ++      S   +   +A++   
Sbjct: 448 NT-SSLVEGGVSASSGVFTHAVHSTSIDIIDSLGTKHMIRFEFYKSGTSEWNWRAIVPDP 506

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             +      + +      +   S+      +   +               L  G S    
Sbjct: 507 AELYGGSATRPNIFEGGTVRFNSDGSLAGMSPPVLQFDPKNGSDSPQRINLSFGKSGGFG 566

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                           +  +              L+  + +  +       +A    N  
Sbjct: 567 GLTSVDKQSETYAISQNGYQAGSLVDVRFDSNGSLLGGFSNGKSMALAQVALANFANNTG 626

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N         S    +   +      ++ S      V+L   L+ LI V++ + 
Sbjct: 627 LQAIGGNVFSTSGN--SGDPIIGAANTGRRGSVNGSKLEMSNVDLSRSLTQLIVVQRGFQ 684

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K +  +D++L TLL   +
Sbjct: 685 ANSKAVTTSDQILNTLLSLKQ 705



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/458 (8%), Positives = 96/458 (20%), Gaps = 28/458 (6%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVTVVTQRSEN 59
                        NI N +   +                                     
Sbjct: 1   MQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLG 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISKLRDSLESYSKN 117
            N+          +     +        +                   +           
Sbjct: 61  VNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLVT 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS---NLRRFLSELTVVN 174
               ++   + D+     +        V   +   + +I+  +         +S    +N
Sbjct: 121 NGGYVVQGWMKDDLRNAEKISEDDFFRVDTTKPIQNIQIDPAMMMPARASSNISLRANLN 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-----FE 229
                   +   A D   +  V           +   +  +   ++T  G  +       
Sbjct: 181 AGRHVDQVANVFALDSTTKTPVDGINPIYDSHDNLTQKAEDFGALFTQSGDAIGLTENQG 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                   E +N    TSE + I I+   +S    SA          Q   + +      
Sbjct: 241 IWVSYKTSEMVNDIEATSEESSIEINHTRISFTNDSAASGISSVVAAQNAINALKQKTGV 300

Query: 290 LDEMARVLIGSFSEKDPIAG----NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
              +   ++   ++ +        N         A       +            +    
Sbjct: 301 EAFVDNGMLRLQNKNNMDGNAEVKNIRITADGTGAFANFIEGDSDITAFRYRYTTSASPD 360

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           S     R    +     ++   +            S +  F    +  I       E  +
Sbjct: 361 SGTGQFRTTEDLRALIQYDANLIKDPSQAYTDSTASVSVKFNKYGMLEIQNKDNGDELKQ 420

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +   ++    S++   ++  +     ++ S     GV+
Sbjct: 421 DLNIFVSGYSSENVTNNVLFKDTMKGLNTSSLVEGGVS 458


>gi|167467491|ref|ZP_02332195.1| flagellar hook protein FlgE [Yersinia pestis FV-1]
          Length = 314

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 58/222 (26%), Gaps = 2/222 (0%)

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
                N      +     +    D   P    +   M     G+          +     
Sbjct: 94  DATDGNTWDVYTRDSSAKVTDPADPTDPAAAAKRGSMVFDSNGALKNVTNGTNATSTTDF 153

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
            F                        Q     S +    +      +    +     ++ 
Sbjct: 154 TFTIPMGVVNGAPAQSFALNVAGSKQQNTGADSIVAQNQTGYAAGEFTGFQINSDGSVVG 213

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
            Y +   +      +   +    L     N   W E   S +  L       F  ++   
Sbjct: 214 TYSNQQTQLLGQIVMVNFSNPEGLSSEGDNV--WKETQSSGNPTLGTAGSGGFGTLTSGA 271

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  V+L +EL  +I  +++Y  + + I   D++LQTL+  
Sbjct: 272 LESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVSL 313


>gi|88597739|ref|ZP_01100972.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190043|gb|EAQ94019.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 865

 Score = 85.1 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N+      + + +  +   +             AD ++ I++ ++    F       
Sbjct: 493 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 552

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230
              +     +        D +++     +      T+  N+    ++ +    L    + 
Sbjct: 553 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 612

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +       S  +    +      + V   + S    G  +  + IR           
Sbjct: 613 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 672

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +    +++G+    +  +  S     +  +       N+  +    T   N    S+ S 
Sbjct: 673 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 732

Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               G  +  +       +   +    +++  + +          +A +  N  L E   
Sbjct: 733 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 792

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S +  +          +  S      V+L   L+ LI +++ Y  ++K I
Sbjct: 793 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 850

Query: 466 MFTDKMLQTLLEGVK 480
             +D+MLQTL++  +
Sbjct: 851 STSDQMLQTLIQLKQ 865



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/431 (7%), Positives = 90/431 (20%), Gaps = 43/431 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ + G  L     + I          T  +N + ++    +  Q         
Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                  D  +   + Q  ++    I              +         +K+ D     
Sbjct: 290 ANQKVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +++          N + +    + + +    V N        N+  +        +   
Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNG 407

Query: 393 GINTNVTLLEY 403
                 T + +
Sbjct: 408 SSLWTATNITF 418


>gi|320107029|ref|YP_004182619.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4]
 gi|319925550|gb|ADV82625.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4]
          Length = 408

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/478 (8%), Positives = 129/478 (26%), Gaps = 75/478 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+ A +     S    +I  N+ N ++  Y +++   +                     
Sbjct: 3   SFSIALSGLKADSVALDTIGNNLANMNSVAYKKQNVNFSDL------------------- 43

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                            F     +  A+          +S +         N        
Sbjct: 44  -----------------FYQTIGVSGANTPQQVGLGTQVSDISTDYTQGGFNPGGSSTQM 86

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            +  +   VV         VQ++  + D +++   + +      +            +  
Sbjct: 87  AINGDGFFVVS-----NGGVQELTRNGDFQLDSSGNLITSDGQSVMGYAATGGVVNGNTA 141

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
            +   +          +  I ++ ++ +   +    S  T  F+++ +  +     + T 
Sbjct: 142 LSALNIPTGQTQAATATTAITMTAVLNSGAAVGTSFSTSTPAFDSLGQSHSVTTTFTKTG 201

Query: 246 TSESN---PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            +  +    +       ++     +      AL+    ++  I    + + A  +   + 
Sbjct: 202 DNTWDYSVTLPSGDAGAATGNTGTLTFDSNGALISPTTNISNISFTGMKDQASDMNLQWP 261

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +   G                              +  Q     S      + S    
Sbjct: 262 LYNSTGGG-----------------------------LITQTAVTASSANFAANGSPSGK 292

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +   ++     +   + +   +      +A ++    L     +   ++    S S ++ 
Sbjct: 293 YQSFSVDSTGTITAQFSNGNTEVLGQVALATVSNEQGLTRMGNDL--YVASRASGSPNVG 350

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +        I  +      V++  E + LI  ++++  ++K +   D + Q  +  ++
Sbjct: 351 VAGVGGRGDIEGNALELSNVDISTEFANLIVAQRAFEANSKTVTTFDTVTQDTIAMIR 408


>gi|220904530|ref|YP_002479842.1| hypothetical protein Ddes_1261 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868829|gb|ACL49164.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 808

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 77/313 (24%), Gaps = 5/313 (1%)

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                VN A     ++    +             + ++G +T+    +    Y       
Sbjct: 501 YGSASVNGATVEAMSNGSSYYFIDAANGNANCYNTTVVGGNTVPAYQDSYGYYHIGAN-- 558

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                +      +   +     +   +    ++++  +A+     K       +      
Sbjct: 559 GPVYGQTPGGVDVLHDSGGYYLDDGTVPHNYITTSDFTAITATAFKPTAYTAPTDASRPV 618

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
              +     L    +       +   VP              +     +         S 
Sbjct: 619 ADTETANSSLASLTTMSRVSGTSPTGVPVFENVINYGTTIPTMTAVERQEYASVANTTSY 678

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
               R     +   L NV    G   +   Y +          +     +  L     N 
Sbjct: 679 TVQNRTQDGYASGTLSNVNIDNG-GVVYGIYSNGKTIPLYQIALYDFQNHQGLYREGGNL 737

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                 N S    L +     F            V++  E   +I  ++ +  ++K I  
Sbjct: 738 FS--ATNDSGEPQLGVAGDNGFGKTKAYNIEQSNVDMTTEFVQMISTQRGFQANSKGITT 795

Query: 468 TDKMLQTLLEGVK 480
            D ML+T++   +
Sbjct: 796 VDTMLETVIGMKR 808



 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/449 (9%), Positives = 108/449 (24%), Gaps = 33/449 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPEN---- 49
           M L A    + +   +  Q+   +  NI N     +  +             +       
Sbjct: 1   MGLSASMWTSVSGLLSHGQKMNVVGNNIANVSTLGFKSQRMDFNDYLYRGIGTTSGPSQI 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
               +  +   +     L + +S          F  +        +              
Sbjct: 61  GAGASVYAILGDFSQGSLESTNSVTDLAIDGNGFFQV-----RKPNSKQMYYTRAGDFYF 115

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + +   +N    +L    ++N +++  N   +      +   A          +    + 
Sbjct: 116 NKDRELQNPEGYLLQGWKVNNEKKLTFNSGATNLGNTDLSKSAYVGSGTPTDIVLDSWNI 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLL--------QKISEIIGISTIVRNNNDMVVYT 221
           +      + F     +D        +              S+     T     + + VY 
Sbjct: 176 IPQQTTNVTFTMGLTNDGKGDRTTSNTSPMTALFDLWDASSKPPLADTAYATQSSIDVYD 235

Query: 222 SDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
             G T      ++ V         N+          +     + +   S   +       
Sbjct: 236 EGGGTHTLTVYYDQVDARKTDSNGNTIYDIKGLPAGYTIYEYLVTIPPSEDRRSYGGEGY 295

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
               +       +  +         +          +  G  +               + 
Sbjct: 296 NAATNTWTKEPTKFYDDPITGTNKQAGVLMSGVMIFDASGQLVNQTAYSYGATETPTANN 355

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            + VNP  +S+    R   +    F  N         L N   ++   +    PV+ +  
Sbjct: 356 QVAVNPSEKSSWQPTRTSSNGLPVFSANFSGQP----LANSVSETMQTSVGGTPVSQVQN 411

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            +T L++   +IG    N   +  +   S
Sbjct: 412 YITELDFGLKNIGNPAWNNPTATAVKTNS 440


>gi|332673326|gb|AEE70143.1| flagellar hook protein FlgE [Helicobacter pylori 83]
          Length = 718

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINALKSQTGIEAYLDGTQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSVARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  +   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINALKSQTGIEAYLDGTQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|315930325|gb|EFV09413.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           305]
          Length = 864

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N+      + + +  +   +             AD ++ I++ ++    F       
Sbjct: 492 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 551

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230
              +     +        D +++     +      T+  N+    ++ +    L    + 
Sbjct: 552 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 611

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +       S  +    +      + V   + S    G  +  + IR           
Sbjct: 612 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 671

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +    +++G+    +  +  S     +  +       N+  +    T   N    S+ S 
Sbjct: 672 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 731

Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               G  +  +       +   +    +++  + +          +A +  N  L E   
Sbjct: 732 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 791

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S +  +          +  S      V+L   L+ LI +++ Y  ++K I
Sbjct: 792 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 849

Query: 466 MFTDKMLQTLLEGVK 480
             +D+MLQTL++  +
Sbjct: 850 STSDQMLQTLIQLKQ 864



 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/428 (7%), Positives = 88/428 (20%), Gaps = 43/428 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
                 +              NI N +   +                             
Sbjct: 3   SLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRGGSN 62

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V+V +    +       +               F  + +     D    +   
Sbjct: 63  PLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTNYLT 114

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-- 160
                +        N +  ++    I+  ++ + +  T                  E+  
Sbjct: 115 RSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTEVAI 174

Query: 161 -----SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
                S L    S   +          +K    +  +         +    +    +  +
Sbjct: 175 KANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEKGVD 234

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              ++ + G  L     + I          T  +N + ++    +  Q            
Sbjct: 235 AGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGTANQ 291

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
               D  +   + Q  ++    I              +         +K+ D      ++
Sbjct: 292 KVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVN 349

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
           +          N + +    + + +    V N        N+  +        +      
Sbjct: 350 DNADGTTDNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNGSSL 409

Query: 396 TNVTLLEY 403
              T + +
Sbjct: 410 WTATNITF 417


>gi|295696121|ref|YP_003589359.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912]
 gi|295411723|gb|ADG06215.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912]
          Length = 265

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 76/243 (31%), Gaps = 2/243 (0%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              N  TV  +++ +    ++  +  G+  P          +  +     +    M    
Sbjct: 25  NIANVNTVGFKASRVMFHDLISQTLSGATAPGDTTGGSNPQQVGLGVGLASIDTPMTPGA 84

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                    +A +      + ++DG      +      ++                G  +
Sbjct: 85  PMMTGVPTDLAIDGNGFFVVQLSDGATQAYTRAGNFHIDSNRNLVTSEGLFVLDTGGAPI 144

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    ++    ++     D   +      +A       L +   N   ++E   S 
Sbjct: 145 QLPDNTKSVSIDKNGNVNCLLDDGTTQTAAQIGLANFANPEGLQKIGNNL--FVETTNSG 202

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + D+   +Q VF  I+        V+L  E + +I  ++++  + + I   D+MLQ ++ 
Sbjct: 203 TADVQAPNQGVFGSITSGALEMSNVDLTNEFTEMIIAQRAFQANARTITSDDQMLQEVVN 262

Query: 478 GVK 480
             +
Sbjct: 263 LKR 265



 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 10/128 (7%), Positives = 25/128 (19%), Gaps = 8/128 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +   I  NI N +   +     M                +   
Sbjct: 1   MMRSLYSAVSGMRGFQTKMDVIGNNIANVNTVGFKASRVMFHDLISQTLSGATAPGD--- 57

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    S   Q  L     ++   M+            ++   +       +     
Sbjct: 58  -----TTGGSNPQQVGLGVGLASIDTPMTPGAPMMTGVPTDLAIDGNGFFVVQLSDGATQ 112

Query: 123 LGKTVIDN 130
                 + 
Sbjct: 113 AYTRAGNF 120


>gi|218660672|ref|ZP_03516602.1| flagellar hook protein FlgE [Rhizobium etli IE4771]
          Length = 374

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 101/375 (26%), Gaps = 5/375 (1%)

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           + S+     +  +     +  D A      F     +   +   A    + +  NL    
Sbjct: 3   QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNAA 62

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV--RNNNDMVVYTSDGT 225
               +         A   +  D L   +V    ++ I   S +     +++  V      
Sbjct: 63  GFQLMGYSYDSGAPAVVVNGFDGLVPVNVNQDGLTAIASTSGVFKGNLDSNAKVAPVAPA 122

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           TL          +      V  +     +      +      P     A        +  
Sbjct: 123 TLPSANLATTTTDTKKVSMVAYDRLGNKVMYDFYFTKTSVVTPPPATPATAATWQVAMFR 182

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
             +           + +       N +    L     +  +D    Q I+       Q  
Sbjct: 183 NADAAVGGTTSFPYTTAAVGTGTLNFDANGKLTTGGAVNIVDPVTGQTIAMDFSGFTQLG 242

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           ++ S        +   + +V  + G   +   Y D   K     P+A + +   L   + 
Sbjct: 243 ADFSGTGTPNGQAATPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSG 301

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N        +S               I         V+L  EL+ +I+ ++SY  ++K+ 
Sbjct: 302 NVYS--ANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIESQRSYTANSKVF 359

Query: 466 MFTDKMLQTLLEGVK 480
                ++  L+   +
Sbjct: 360 QTGSDIMDVLVNLKR 374


>gi|126697826|ref|YP_001086723.1| flagellar hook protein [Clostridium difficile 630]
 gi|115249263|emb|CAJ67076.1| Flagellar hook protein FlgE (Distal rod protein) [Clostridium
           difficile]
          Length = 327

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 12/257 (4%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G       P D+  +      V  +   ++      + + G     G +K +   R    
Sbjct: 83  GNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGRLVNG 142

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  Q             E           P +     I   D  +   +   I  +  
Sbjct: 143 DGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNISKDGT 202

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                S  +    V                          + + F   AG++        
Sbjct: 203 VEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQKVQIYAFQNPAGLD-------- 254

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
           A     +     S    +          I +       V++ EE + +I   +S+  ++K
Sbjct: 255 AAGGNLFKPSANSGDPQIA----GATGTIIQGAIEASNVDIAEEFTEMIIASRSFQANSK 310

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I  +D++LQ ++   +
Sbjct: 311 IISTSDEILQEIINLKR 327



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 73/281 (25%), Gaps = 24/281 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +       +   I  N+ NA   ++ +     T S                
Sbjct: 1   MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                +        S NK+M    +   +           +  +    +     + S   
Sbjct: 61  GTNLGQVGVGSKISSINKDMVQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                  + +   KN+    L        + ++ +    A   + ++    K  E  +  
Sbjct: 121 DTG--FKAADGALKNIKGGRLVNGDGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIP 178

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLD--QRDVLLQKISEIIGISTIVRNNNDMVVY 220
           L+    +   V + +++  +        L   QR   +  I +   +       + +   
Sbjct: 179 LQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGT 238

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
                      P  ++    N +  ++ S    I G   + 
Sbjct: 239 IQKVQIYAFQNPAGLDAAGGNLFKPSANSGDPQIAGATGTI 279


>gi|218563315|ref|YP_002345095.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112361022|emb|CAL35823.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
          Length = 865

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N+      + + +  +   +             AD ++ I++ ++    F       
Sbjct: 493 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 552

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230
              +     +        D +++     +      T+  N+    ++ +    L    + 
Sbjct: 553 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 612

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +       S  +    +      + V   + S    G  +  + IR           
Sbjct: 613 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 672

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +    +++G+    +  +  S     +  +       N+  +    T   N    S+ S 
Sbjct: 673 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 732

Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               G  +  +       +   +    +++  + +          +A +  N  L E   
Sbjct: 733 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 792

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S +  +          +  S      V+L   L+ LI +++ Y  ++K I
Sbjct: 793 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 850

Query: 466 MFTDKMLQTLLEGVK 480
             +D+MLQTL++  +
Sbjct: 851 STSDQMLQTLIQLKQ 865



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/431 (7%), Positives = 90/431 (20%), Gaps = 43/431 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ + G  L     + I          T  +N + ++    +  Q         
Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                  D  +   + Q  ++    I              +         +K+ D     
Sbjct: 290 ANQKVNLDITLNGVRIQNADIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +++          N + +    + + +    V N        N+  +        +   
Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNG 407

Query: 393 GINTNVTLLEY 403
                 T + +
Sbjct: 408 SSLWTATNITF 418


>gi|15645489|ref|NP_207664.1| flagellar hook protein FlgE [Helicobacter pylori 26695]
 gi|2506418|sp|P50610|FLGE_HELPY RecName: Full=Flagellar hook protein flgE
 gi|2313997|gb|AAD07911.1| flagellar hook (flgE) [Helicobacter pylori 26695]
          Length = 718

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/470 (7%), Positives = 102/470 (21%), Gaps = 45/470 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 161 ----------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                                    AI    +S     D ++        ++++      
Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSGTNLAQVAEDMGS 235

Query: 211 --VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
               + + +++  + G  +     + +     ++   T E N + I     S+   ++  
Sbjct: 236 LCNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                A+  ++            ++           + +        G        D D 
Sbjct: 296 VAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
            +          +    ++    R    +      +   +       N+   + +     
Sbjct: 356 DVTAFKYSY-THSISPNADIGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASIGVSV 414

Query: 389 DPVAGI-----NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           +          +    + E     +     +   ++ L   +    N  S
Sbjct: 415 NQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTAS 464


>gi|255099422|ref|ZP_05328399.1| flagellar hook protein [Clostridium difficile QCD-63q42]
          Length = 327

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 12/257 (4%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G       P D+  +      V  +   ++      + + G     G +K +   R    
Sbjct: 83  GNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGRLVNG 142

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             +  Q             E           P +     I   D  +   +   I  +  
Sbjct: 143 DGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNISKDGT 202

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                S  +    V                          + + F   AG++        
Sbjct: 203 VEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQKVQTYAFQNPAGLD-------- 254

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
           A     +     S    +          I +       V++ EE + +I   +S+  ++K
Sbjct: 255 AEGGNLFKPSANSGDPQIA----GATGTIIQGAIEASNVDIAEEFTEMIIASRSFQANSK 310

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I  +D++LQ ++   +
Sbjct: 311 IISTSDEILQEIINLKR 327



 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 75/281 (26%), Gaps = 24/281 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +       +   I  N+ NA   ++ +     T S                
Sbjct: 1   MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                +        S NK+M    +   +           +  +    +     + S   
Sbjct: 61  GTNLGQVGVGSKISSINKDMVQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                  + +   KN+    L        + ++ +    A   + ++    K  E  +  
Sbjct: 121 DTG--FKAADGALKNIKGGRLVNGDGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIP 178

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLD--QRDVLLQKISEIIGISTIVRNNNDMVVY 220
           L+    +   V + +++  +        L   QR   +  I +   +       + +   
Sbjct: 179 LQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGT 238

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
                T     P  ++ E  N +  ++ S    I G   + 
Sbjct: 239 IQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGTI 279


>gi|222833046|gb|EEE71523.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%)

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G+ S K          Y         + +           + + TL +    ++  +
Sbjct: 135 AINGTTSDKVTLGKATDPQYGTAYQRDAGNASSFLALRDSKLFDGSTTLSDGFSTAMAQV 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 +      S+ +  ++    +   GVNL EE + L++ +QSY  S K++     +
Sbjct: 195 GTRTQSAQYAAKLSETIAKNLEADRTAVSGVNLDEEAAKLLQYQQSYQASAKMLQVAQSI 254

Query: 472 LQTLLEGV 479
             ++L+ V
Sbjct: 255 FDSVLQTV 262


>gi|57236913|ref|YP_179866.1| flagellar hook protein FlgE [Campylobacter jejuni RM1221]
 gi|57165717|gb|AAW34496.1| flagellar hook protein [Campylobacter jejuni RM1221]
 gi|315059173|gb|ADT73502.1| Flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 845

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/386 (9%), Positives = 98/386 (25%), Gaps = 13/386 (3%)

Query: 106 KLRDSLESYSKNLSEDILGKTV----IDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              ++++   KN        T     +   +                  D ++ +++ ++
Sbjct: 462 NYWNAIQGSLKNSDARTFRTTEDLRELLQRDARYGVDYDGDGSKTYDADDINQAVKVVVT 521

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
               F          I     + +       +              +    +    +   
Sbjct: 522 ENGNFAISNANETSTIPANAGAGNTQVTTNPKNMSFNITAYSNKQGTVSTNDAFAKIFKA 581

Query: 222 SDGT-TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            DG  T+   +      +           + +     +       +  +        I  
Sbjct: 582 FDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIR 641

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
              P   N   E    +I   +  +     +   P                  +S     
Sbjct: 642 VPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSPNNGAAPNQQIKLSFGTSG 701

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           +     + +        +     +         +    +++  + +          +A +
Sbjct: 702 SNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASV 761

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
             N  L E   N   +     S +  +          +  S      V+L   L+ LI +
Sbjct: 762 ANNSGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIII 819

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ Y  ++K I  +D+MLQTL++  +
Sbjct: 820 QRGYQANSKTISTSDQMLQTLIQLKQ 845



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/421 (6%), Positives = 93/421 (22%), Gaps = 38/421 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  +                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ ++GT L     + I     ++   T +   + +      +NQ  ++  G  
Sbjct: 233 GVDAGSLFNANGTGLNLRDGQGIWVSYADAKFTTDKPANVNVFDPNNHTNQNGSIFWGDK 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              + +  ++  +     +  +     ++        ++ +  G+           +   
Sbjct: 293 DNTVNLDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFVN 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             ++    N +  +      +         WN  N         +  +S       +   
Sbjct: 353 DNADGTTDNMKNINLTVNQANTAGERHTITWNAGNNNFTAASAKNGANSVWIPTAANVNG 412

Query: 393 G 393
            
Sbjct: 413 N 413


>gi|317180632|dbj|BAJ58418.1| flagellar hook protein FlgE [Helicobacter pylori F32]
          Length = 718

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/470 (8%), Positives = 104/470 (22%), Gaps = 40/470 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL-EI 160
               +     +         ++   V + ++   +  +T A +V       +  I+   +
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMV 218
              R         N                          I+ +   ST       +   
Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLTQVAEDMGS 235

Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           +Y  DG  L             + + +     ++E++ + ++GV +S    SAV +    
Sbjct: 236 LYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
              +   + +         +    +   +  +           +  A      +      
Sbjct: 296 VAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387
                  +  +  +P+        ++          N+       D       S   +  
Sbjct: 356 DVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASIGVSVN 415

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +  IN          N   ++    SDS   ++  +     ++ +  
Sbjct: 416 QYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASL 465


>gi|89098635|ref|ZP_01171517.1| flagellar hook protein [Bacillus sp. NRRL B-14911]
 gi|89086597|gb|EAR65716.1| flagellar hook protein [Bacillus sp. NRRL B-14911]
          Length = 270

 Score = 84.7 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 58/227 (25%), Gaps = 9/227 (3%)

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           + +                   +   Q  L      +    ++            G+   
Sbjct: 46  TFKDMVSQTVSGATAGGAGVGGINPKQVGLGSQMSSIDTVDTQGSLQTTGRILDIGIQGD 105

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              +                     +  +   +    S     N+ N++   +L      
Sbjct: 106 GYFRVQKGTNSYYTRAGNFYFDNSGNMVTASGEQVLNSNGTAINIPNISQIENLSIGADG 165

Query: 381 SFNKNFIFDPVAG-------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           S +         G        + N  L +   N   +     S      +        + 
Sbjct: 166 SISFIQGGTSTTGPTIGLARFSNNGGLEKVGNNL--YKSTANSGPAQNVLPGTSGAGSLV 223

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 224 SGSLEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 270



 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 24/137 (17%), Gaps = 13/137 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54
           +L       +   N   +   I  NI N +   Y +                        
Sbjct: 7   MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVTFKDMVSQTVSGATAGGAGVG 66

Query: 55  -----QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      M          ++     +       +         NS          
Sbjct: 67  GINPKQVGLGSQMSSIDTVDTQGSLQTTGRILDIGIQGDGYFRVQKGTNSYYTRAGNFYF 126

Query: 110 SLESYSKNLSEDILGKT 126
                    S + +  +
Sbjct: 127 DNSGNMVTASGEQVLNS 143


>gi|600725|gb|AAA92803.1| flagellar hook FlgE [Helicobacter pylori]
          Length = 718

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/438 (9%), Positives = 119/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +A+        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NANSGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R           +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGADWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 107/454 (23%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +       D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----NPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSPKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     N             +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNANSG----------QFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +    +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434


>gi|261839317|gb|ACX99082.1| flagellar hook protein FlgE [Helicobacter pylori 52]
 gi|317178772|dbj|BAJ56560.1| flagellar hook protein FlgE [Helicobacter pylori F30]
          Length = 718

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/470 (8%), Positives = 104/470 (22%), Gaps = 40/470 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL-EI 160
               +     +         ++   V + ++   +  +T A +V       +  I+   +
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST--IVRNNNDMV 218
              R         N                          I+ +   ST       +   
Sbjct: 176 MPARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSDGINPVYDSSTNLTQVAEDMGS 235

Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           +Y  DG  L             + + +     ++E++ + ++GV +S    SAV +    
Sbjct: 236 LYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVSRTSSL 295

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
              +   + +         +    +   +  +           +  A      +      
Sbjct: 296 VAAKNAINALKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANFLDGDK 355

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387
                  +  +  +P+        ++          N+       D       S   +  
Sbjct: 356 DVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDANIVKDPSLADNYQDSAASIGVSVN 415

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +  IN          N   ++    SDS   ++  +     ++ +  
Sbjct: 416 QYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNTASL 465


>gi|149195336|ref|ZP_01872423.1| flagellar hook protein [Caminibacter mediatlanticus TB-2]
 gi|149134528|gb|EDM23017.1| flagellar hook protein [Caminibacter mediatlanticus TB-2]
          Length = 634

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/401 (9%), Positives = 108/401 (26%), Gaps = 7/401 (1%)

Query: 86  LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
           L      +D   +     I    +  E                + A ++  N   +    
Sbjct: 235 LTSTFCINDDIKDGKDVNIDFTLNGKEIKLNLPDGATKETISKEIANQLNSNGFIATANN 294

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
            ++      E  LE +N     +   ++      +     +  +    +   L   +   
Sbjct: 295 GELTISTTNEFLLESNNEILPSTNAAILTYKDTPEDEFDFNNMEDFINKLQTLALNTYGD 354

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV------V 259
            ++  + NN  + +  +  +TL   +    N  +     +    N I+ +          
Sbjct: 355 IVNVSLDNNGRVAIENTSNSTLNSYLYSTNNSNENFIKNLGRVGNQIYPNTANKSYEFLA 414

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
           +S              + +  +           + +  I   +    I    +       
Sbjct: 415 NSQDFGGYVIDSNGDKIPVTINFTKKSVLNNTTIWKGTISINTPTQNITTTQDFTFDSNG 474

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                   +         I    +  +N +         ++       +     +I  + 
Sbjct: 475 FLLSPKEISFNNINFRFNISSFAKTDTNATNYSFNQDGVEEGFLQNYQIDENGKIIGIFS 534

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           ++ +  F   P+        L     N       +       +     +   +  S   T
Sbjct: 535 NNQDITFGQIPIFHFQNPQGLENIGSNLFRETSNSNKAFLYTNENGSYI-GKLLPSKLET 593

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             VN+ + ++ LI  ++++  S K +  +D+M+Q  +   +
Sbjct: 594 SNVNMSQAMTELIVTQKAFQASAKTVTTSDEMIQKAINLKR 634



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/415 (10%), Positives = 109/415 (26%), Gaps = 20/415 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F    +   +          NI N +   +              T+      +   
Sbjct: 1   MTTSFYNGVSGLISFQNGLDIWGDNIANINTPGFKESIPEFATIFSQ-TLSNASPTSDIG 59

Query: 63  FDKVLHAHSSAIGQQRLLQS------FEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +LH+ +  +    ++ S        A ++      +   +              +  
Sbjct: 60  LGSLLHSTAKDMSIGNIVDSDNPFDIAIADEKGFLGVSYNGETFYTRNGNFTRDANGFLV 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N S   L     +N  +    +         +  D + +  L  +          V+  A
Sbjct: 120 NDSGAYLLVANANNLIKTENGY--------IVNRDINTDNLLPTNTFSPISLPNNVILPA 171

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           I  K  S     +   Q        ++I   +   ++ NDM +   +G  L      D+ 
Sbjct: 172 IPTKNVSLSTNLNNDSQITTTKPVTNDISFSAMYDKDGNDMQI--VNGQNLLFGFGNDVT 229

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           +      T T   N    DG  V+ +      + K+          +             
Sbjct: 230 YN-NGLLTSTFCINDDIKDGKDVNIDFTLNGKEIKLNLPDGATKETISKEIANQLNSNGF 288

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +  + + +  I+  +E +               L    +     +     +   +    +
Sbjct: 289 IATANNGELTISTTNEFLLESNNEILPSTNAAILTYKDTPEDEFDFNNMEDF--INKLQT 346

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           ++     ++ N++   +      ++ N        +  N+N   ++        +
Sbjct: 347 LALNTYGDIVNVSLDNNGRVAIENTSNSTLNSYLYSTNNSNENFIKNLGRVGNQI 401


>gi|68164546|gb|AAY87275.1| predicted flagellar hook protein [uncultured bacterium BAC17H8]
          Length = 1387

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 3/284 (1%)

Query: 196  VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
             L  +I++I+  +T        V Y+S+  +   +         +               
Sbjct: 1104 ALQTRINQIVDPTTGDTIGGVTVTYSSETNSFTFSTGTTGTDSTIKVKGAARLGLDDVPL 1163

Query: 256  GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
            GV       + V       +    D+   +  N  + +       + ++  +  +     
Sbjct: 1164 GVGTVPEIYNLVQATDADGVALFVDANGEVVTNPPENLVEDYYPLYIDEGELTFDKTGKL 1223

Query: 316  -GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                     +  +      +      + Q     S L            +   +     +
Sbjct: 1224 VSPKNLVHYEKQEEGFSIALDVDFSTSTQLAQPFSVLTVEQDGFTSGRLDGIEIDSSGTI 1283

Query: 375  INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              +Y +  N       VA  N    L +       + E   S +  +       F +I  
Sbjct: 1284 RANYTNGQNNPLGKIVVANFNNQNGLKQIGNA--TYTETAVSGTPQVGEAGSEGFGNILS 1341

Query: 435  SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   V++ EEL  LI  ++++  S K I  T  + QT++  
Sbjct: 1342 GSLERSNVDITEELVNLITAQRNFQASAKAIETTTGLTQTIINI 1385



 Score = 68.5 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 99/439 (22%), Gaps = 21/439 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F  A    N +S   ++   NI N     + R                      +    
Sbjct: 2   SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFATSPLQNASSSIGSGTIL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      + A  +A+      Q F ALK  +        +       L  + + Y 
Sbjct: 62  KGIKQQFTQGNIAASLNALDLAISGQGFFALKPSL----TSAQTVYTRNGSLNVNNDRYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +   L    ++    V      SA  +Q      D +    I       +   VV D
Sbjct: 118 VDSAGQFLLTYPVNTDGSVTAKDLDSAVPLQLPVTSGDPQATSNIKLGVNVNAASDVVTD 177

Query: 176 AIKFKTASKHDAHDFLDQRD----VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             +F+     D +D     +     +   +      +                      V
Sbjct: 178 RPQFQDGYTFDPNDPETFTNSTSITIFDDLGNPTIATVYFIKTQAASADDPTNKYDTRLV 237

Query: 232 PRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             D          V      IF+D       +    +   +GK   L ++ D    +   
Sbjct: 238 INDTVITPDLVSAVDDAGKQIFVDRFGQQTTTIPDDNYFIEGKGSPLYKLDDLQTLVPSQ 297

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                       F E+        N P  F A               + + VN      P
Sbjct: 298 PAKISGEQTSFDFGEEGDKLVEIVNDPLQFKATREAGNSGSDVYWGKDFLLVNVDDSDQP 357

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             +     +        +                 +  + D +      V          
Sbjct: 358 VSIDINPGLYNAEQLAAEVERAINAAYGDDRKFQVEQNVDDTITLDFQRVGADGTITPLT 417

Query: 409 GWLEKNRSDSHDLHMKSQV 427
             +      +     ++  
Sbjct: 418 NKVSVELLGTDSYVTEAMG 436


>gi|315931307|gb|EFV10276.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           327]
          Length = 847

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + N+      + + +  +   +             AD ++ I++ ++    F       
Sbjct: 475 LNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANE 534

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230
              +     +        D +++     +      T+  N+    ++ +    L    + 
Sbjct: 535 QSTVPPNAINGVGNATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQI 594

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +       S  +    +      + V   + S    G  +  + IR           
Sbjct: 595 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 654

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +    +++G+    +  +  S     +  +       N+  +    T   N    S+ S 
Sbjct: 655 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 714

Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               G  +  +       +   +    +++  + +          +A +  N  L E   
Sbjct: 715 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 774

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S +  +          +  S      V+L   L+ LI +++ Y  ++K I
Sbjct: 775 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 832

Query: 466 MFTDKMLQTLLEGVK 480
             +D+MLQTL++  +
Sbjct: 833 STSDQMLQTLIQLKQ 847



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/414 (7%), Positives = 87/414 (21%), Gaps = 43/414 (10%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTIS-----------------------PENVTVVTQRS 57
                 NI N +   +                                    V+V +   
Sbjct: 1   MDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTR 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +       +               F  + +     D    +        +        N
Sbjct: 61  IHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTNYLTRSGDFKLDAYGNFVN 112

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-------SNLRRFLSEL 170
            +  ++    I+  ++ + +  T                  E+       S L    S  
Sbjct: 113 NAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTEVAIKANLNSGLNIGTSSR 172

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230
            +          +K    +  +         +    +    +  +   ++ + G  L   
Sbjct: 173 NLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLR 232

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
             + I          T  +N + ++    +  Q                D  +   + Q 
Sbjct: 233 DGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGTANQKVNLDITLNGVRIQN 289

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +    I              +         +K+ D      +++          N + 
Sbjct: 290 ANIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVNDNADGTTDNMKNINL 347

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
           +    + + +    V +        N+  +        +         T + +A
Sbjct: 348 VVANTNTAGELWNAVWDNNNQTFTFNNTGNGQAGTPTINKNGSSLWTATNITFA 401


>gi|57504594|ref|ZP_00370706.1| flagellar hook protein FlgE [Campylobacter coli RM2228]
 gi|57019489|gb|EAL56183.1| flagellar hook protein FlgE [Campylobacter coli RM2228]
          Length = 845

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
           P   N   E    +I   +  +     +   P                  +S     +  
Sbjct: 645 PAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSPNNGAAPNQQIKLSFGTSGSND 704

Query: 344 YRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              + +        +     +         +    +++  + +          +A +  N
Sbjct: 705 GLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN 764

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L E   N   +     S +  +          +  S      V+L   L+ LI +++ 
Sbjct: 765 SGLEEIGGNL--FKVTANSGAIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRG 822

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y  ++K I  +D+MLQTL++  +
Sbjct: 823 YQANSKTISTSDQMLQTLIQLKQ 845



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/482 (7%), Positives = 100/482 (20%), Gaps = 57/482 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N + K +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTKGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +   +           F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GPVQTTNKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  +                  E
Sbjct: 113 YLTRDGDFKLDAYGNFVNNAGFVVQGWNINWDNQTIDSSRSPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDI---------------NFEKMNSYTVTSESNPIFIDGV 257
             +   ++ ++GT L     + I               N    +    T+++  IF    
Sbjct: 233 GVDAGSLFNANGTGLNLRDGQGIWVSYADAKFTTDKPANVNVFDPNNHTNQNGSIFWGDK 292

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR----VLIGSFSEKDPIAGNSEN 313
             + N    +    I+            + N             + +  + D       N
Sbjct: 293 DNAVNLDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFVN 352

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                  D +K+++  + Q  +        + +  +      + +      +   A    
Sbjct: 353 DNADGTTDNMKNINLTVHQANTAGERHQINWVAANNNFTATSTKNNANSVWIPTAANVNG 412

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
                       +++         +   +        +  N             +   + 
Sbjct: 413 NAESIQIITAHKYVYSSNPVDIGPMYNPDGGPQFQPGVGNNAPTDPASLNYWNAIQGSLK 472

Query: 434 ES 435
            S
Sbjct: 473 NS 474


>gi|208434779|ref|YP_002266445.1| flagellar hook protein [Helicobacter pylori G27]
 gi|208432708|gb|ACI27579.1| flagellar hook protein [Helicobacter pylori G27]
          Length = 718

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +A+        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NANSGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282
            ++              +++  S      +     +R                      +
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V     + +      +   ++      N   +               L  G S +     
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                        +  +              L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 108/454 (23%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     N             +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNANSG----------QFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +    +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434


>gi|3286760|emb|CAA05173.1| flagellar hook subunit protein [Campylobacter jejuni]
          Length = 862

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 110/404 (27%), Gaps = 31/404 (7%)

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
              D     +   ++             ++     + R  + +R    ++    +     
Sbjct: 461 SFTDDDGVDTTRPTDPASAAYWDAMNGGLLNTNARTFRTTEDLRELLQRDARYGVDYDGS 520

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                  VN A+K    +  +      + +  +   +       I      M    +  +
Sbjct: 521 GNFAAADVNQAVKVVVTANGNFAISNAKENSSIPANAGTGITGAITTEPKAMSFNITAYS 580

Query: 226 TLFETVPRDINFEK---MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
               TV  +  F          +T   +    + + +S+          + +   +    
Sbjct: 581 NKAGTVTTNDAFTAIFKAWDGPLTVGGSIKESEQLKLSAFSAGLEIFDSLGSKHTLEVQF 640

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V     Q       +I    E   I    E      +     + D  L      TI  +P
Sbjct: 641 VKQSTTQDGGNEWQMIIRVPEPAEINTTGEGQIISSVGTARFNNDGSLASYTPRTINFSP 700

Query: 343 QYRSNPS--------------------------FLRDGGSVSKKFLWNVKNLAGYPDLIN 376
              + P+                               G  S     +   +    +L+ 
Sbjct: 701 NNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYSSGNLKPDAIRVDEKGNLLG 760

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
            + +          +A +  N  L E   N   +     S +  +          +  S 
Sbjct: 761 EFTNGKTFRVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSA 818

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 819 LEMSNVDLSRALTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 862



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/446 (7%), Positives = 100/446 (22%), Gaps = 40/446 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++                      NI N +   +                          
Sbjct: 1   MMRSLWSGVRRLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +   +S          F  + +     D    +
Sbjct: 61  GQNPLQIGLGVSVSSTTRIHSQ---GSVQTTNSNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N S  I+    I+  ++ + +  +                  E
Sbjct: 113 YLTRDGAFKLDAYGNFVNNSGFIVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGYNNKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG-- 270
             +   ++ + GT L     + I     ++   T++      D  +  +   +       
Sbjct: 233 GVDAGSLFNASGTGLNLRDGQGIWVSYADAKYSTNKVGVSAFDANLQQNQTAAFWGSADQ 292

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           ++   + +    +   + Q  + A   I +F+        +             +  N  
Sbjct: 293 RVNLDITLNGVRIQNAEIQNIDDAIAYINTFTAPTDTRDGTGVRAVKSADGSGIEFVNDN 352

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
             G ++ +       S+ +   +  +       N +    +         +    +  D 
Sbjct: 353 SDGTTDNMKNINLIVSDANTAGELWNAVWDPALNGQGGFTFNQNTPAITRNGTSLWTADQ 412

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRS 416
           +   NT              +E   +
Sbjct: 413 ITPNNTPDGNTAVTLTGTDRVEVITA 438


>gi|308068661|ref|YP_003870266.1| flagellar basal-body rod protein flgG (Distal rod protein)
           [Paenibacillus polymyxa E681]
 gi|305857940|gb|ADM69728.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Paenibacillus polymyxa E681]
          Length = 272

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 75/248 (30%), Gaps = 5/248 (2%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL--QIRDSVVPIFQNQLDEMAR 295
              N  T   +S+ +    ++  ++ G++ P      +   Q+         + L     
Sbjct: 25  NIANVNTTGFKSSRVMFKDILSQTSSGASAPGDAAGGINAKQVGLGSTVGSIDTLHLPGS 84

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            +  +      I G+   +  +     +  L       +     +        +    G 
Sbjct: 85  AMTTNNPTDLRINGDGFFLVKMTGDQEVPYLTRAGDFHVDGNRQLVTSDGLFVADSGGGT 144

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS---IGWLE 412
            +    L    +++    ++    D    N     V  +     L +   +         
Sbjct: 145 PIQLNDLTTSFSISQDGTIVQQLSDGTVDNQTKVGVTKVINPEGLEKIGGSLYRATVNSG 204

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +  + +      +      I         V+L  E + +I  ++ +  ++++I  +D++L
Sbjct: 205 EEGAVNPMEANSTDAGTGAIVAGQLEMSNVDLTGEFTEMIVAQRGFQANSRIITTSDEVL 264

Query: 473 QTLLEGVK 480
           Q ++   +
Sbjct: 265 QEVVNLKR 272



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 6/52 (11%), Positives = 12/52 (23%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          +L       +       +   I  NI N +   +     M        +   
Sbjct: 1  MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGA 52


>gi|284041521|ref|YP_003391861.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684]
 gi|283945742|gb|ADB48486.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684]
          Length = 293

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 68/272 (25%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T     N   V      T F+     +          T  SN + I   V   +  + + 
Sbjct: 22  TANDLANVNTVAYKSSRTTFQDSLAQLQRGAAGPGNGTGGSNALQIGLGVKLGSVDNIMT 81

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +G  +      D  +                  + +   AGN        +         
Sbjct: 82  EGAPQTTGSPLDVYIEGSGWFRVANGTPPAVPTAFQWTRAGNFTTNSQGHLITSTGQYVV 141

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 +        Y  N +            +    +        N    +F +    
Sbjct: 142 GRGATATPDGRGGFTYAPNATDSYIQIPPGSTDVSISPDGGVSYVDRNRASPTFERRVTA 201

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A                 W E   S +  +                    V+L  + 
Sbjct: 202 GYIALGKFANEAGLQRNGGSTWSESAASGAATVDTPGVGGNGRTLAGMLEMSNVDLATQF 261

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I  ++ +  ++++I  +D+MLQ L+   +
Sbjct: 262 TTMITAQRGFQANSRVISTSDEMLQDLVNLKR 293



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/296 (7%), Positives = 59/296 (19%), Gaps = 26/296 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +              ++ N +   Y    T    S                
Sbjct: 1   MMRGMFSAISGLKVNQTMLDVTANDLANVNTVAYKSSRTTFQDSLA-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L   ++  G      +   +                  + + +     + +  +  
Sbjct: 47  ---QLQRGAAGPGNGTGGSNALQI--------GLGVKLGSVDNIMTEGAPQTTGSPLDVY 95

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL-TVVNDAIKFKT 181
           +  +              +A +  +            I++  +++           +   
Sbjct: 96  IEGSGWFRVANGTPPAVPTAFQWTRAGNFTTNSQGHLITSTGQYVVGRGATATPDGRGGF 155

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
               +A D   Q       +S          + N          T           E   
Sbjct: 156 TYAPNATDSYIQIPPGSTDVSISPDGGVSYVDRNRASPTFERRVTAGYIALGKFANEAGL 215

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                S  +     G       G       +  +L++ +  +      +    R  
Sbjct: 216 QRNGGSTWSESAASGAATVDTPGVGGNGRTLAGMLEMSNVDLATQFTTMITAQRGF 271


>gi|108563278|ref|YP_627594.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1]
 gi|217033066|ref|ZP_03438533.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128]
 gi|254779163|ref|YP_003057268.1| flagellar hook protein FlgE [Helicobacter pylori B38]
 gi|298736574|ref|YP_003729100.1| flagellar hook protein FlgE [Helicobacter pylori B8]
 gi|107837051|gb|ABF84920.1| flagellar hook protein [Helicobacter pylori HPAG1]
 gi|216945210|gb|EEC23895.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128]
 gi|254001074|emb|CAX29021.1| Flagellar hook protein FlgE [Helicobacter pylori B38]
 gi|298355764|emb|CBI66636.1| flagellar hook protein FlgE [Helicobacter pylori B8]
 gi|317009123|gb|ADU79703.1| flagellar hook protein FlgE [Helicobacter pylori India7]
 gi|317012675|gb|ADU83283.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75]
          Length = 718

 Score = 84.3 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282
            ++              +++  S      +     +R                      +
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V     + +      +   ++      N   +               L  G S +     
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                        +  +              L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|210135063|ref|YP_002301502.1| flagellar hook protein FlgE [Helicobacter pylori P12]
 gi|210133031|gb|ACJ08022.1| flagellar hook protein [Helicobacter pylori P12]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|28900122|ref|NP_799777.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837072|ref|ZP_01989739.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810]
 gi|260365772|ref|ZP_05778268.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030]
 gi|260880694|ref|ZP_05893049.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034]
 gi|260897700|ref|ZP_05906196.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466]
 gi|260899389|ref|ZP_05907784.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037]
 gi|28808405|dbj|BAC61610.1| LfgE [Vibrio parahaemolyticus RIMD 2210633]
 gi|149749660|gb|EDM60405.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810]
 gi|308086228|gb|EFO35923.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466]
 gi|308092098|gb|EFO41793.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034]
 gi|308109176|gb|EFO46716.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037]
 gi|308114990|gb|EFO52530.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030]
 gi|328470101|gb|EGF41012.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329]
          Length = 398

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/395 (9%), Positives = 94/395 (23%), Gaps = 2/395 (0%)

Query: 85  ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
           AL  + + +   N    +  +      +      +    G          +         
Sbjct: 6   ALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVASISQNFDKNGS 65

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +       D  I      + +     T+   +  F T   +        +       S  
Sbjct: 66  ITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQGYSVDSNN 125

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             ++  V N        +   T       + +          +  +P        S    
Sbjct: 126 NLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSFNSSYTTQ 185

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                G    + Q              ++        +       +          +   
Sbjct: 186 VYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPTGSFNVAF 245

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                    +   +  + Q+ +      +  +           +     +   Y +  ++
Sbjct: 246 PAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGYTSGELAGVRVEDNGMVYATYTNGQSQ 305

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L +   +   W +   S +  + +       +++        V+L
Sbjct: 306 LQGQVVLADFANTQGLAKV--SGTAWTQSFSSGAPIMGVPGSGTLGNLTPGALEGSNVDL 363

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             EL  L+  +++Y  + K I  +DK+ Q L   V
Sbjct: 364 TSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 90/393 (22%), Gaps = 7/393 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             DH   +             ++    +   L  
Sbjct: 59  NFDKNGSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   ++     + +           +    ++N       +            +  
Sbjct: 119 YSVDSNNNLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N  ++ V    G T   T+P   N +   +   
Sbjct: 179 NSSYTTQVYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPT 238

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            S +      G    S   +     +  A       V     N         +       
Sbjct: 239 GSFNVAFPAAGANAMSVDINLKGSTQFGAAF----GVSTNSPNGYTSGELAGVRVEDNGM 294

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  +     L     + D  N               + S    +   GS +   L   
Sbjct: 295 VYATYTNGQSQLQGQVVLADFANTQGLAKVSGTAWTQSFSSGAPIMGVPGSGTLGNLTPG 354

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  DL +           +   A   +  
Sbjct: 355 ALEGSNVDLTSELVALMTAQRNYQANAKTISTS 387


>gi|255022066|ref|ZP_05294072.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756]
 gi|254968552|gb|EET26108.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756]
          Length = 416

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/473 (9%), Positives = 111/473 (23%), Gaps = 58/473 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +N A +  + A     +I  NI N +   +   +             +  +        
Sbjct: 2   GYNTAISGLDAAQTDLNTIGNNIANVNTVGFKESNAQFGDLYAASLAGSAGASTTPGIGV 61

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                S    Q  +  +   L   ++    +  +    +   R+         S + + +
Sbjct: 62  STVDLSQNFTQGNIQTTGNPLDMAINGPGFFIVNNNGTMDYTRNGQFHV----SSNGVLE 117

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
              D   +  Q    S      I ++                + +  +N      + +  
Sbjct: 118 NNGDLPVQGFQPVPGSNGRFSTILSNLTISESAMPPQATSQAALVANLNANDVPPSVTP- 176

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                                                              F   N  + 
Sbjct: 177 ---------------------------------------------------FSASNPNSY 185

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
              +     D +  + +      +          +     +         V  GS +   
Sbjct: 186 NDSTTFQVYDSLGNAQDITLYFVQASGTGSANQPNQWDVYYSAGNSSGTTVATGSLTTLQ 245

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                     G          D      IS  +  +    S  +   +  +      ++ 
Sbjct: 246 FSNTGQLVSGGTASFTVSGWGDGSASSTISVNLSGSTLTNSPFAVTSENVNGYAPGTYSS 305

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++    ++  +Y +   K      +A       L   + N   W     + +  ++   
Sbjct: 306 ISVQSTGEIDANYTNGQKKAIGKVALANFANLQGLAPISGNL--WSATATAGNPLVNSPG 363

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 I      +  V+L  +L  +I  +Q+Y  +   I    +  Q+LL+ 
Sbjct: 364 TAGLGVIQSGAVESSNVSLSSQLVDMIVAQQAYQANTSTIKTEQQDTQSLLQL 416


>gi|83593766|ref|YP_427518.1| hypothetical protein Rru_A2431 [Rhodospirillum rubrum ATCC 11170]
 gi|83576680|gb|ABC23231.1| Protein of unknown function DUF1078 [Rhodospirillum rubrum ATCC
           11170]
          Length = 442

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/489 (10%), Positives = 104/489 (21%), Gaps = 56/489 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVT 51
           MSL   F  +       S     I  N+ N +   Y + DT                 V 
Sbjct: 1   MSLGGAFTNSSMAMITQSHALGQISTNVANINTTGYKQVDTNFKTLLSESTANFDFFGVK 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            V  R  ++      L      +      Q    + +     D    +            
Sbjct: 61  PVDYRRVSEQ---GGLLTTGRNLDVAIGGQGLFMVNQ---QADLSGETFYTRDGSFG--- 111

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                  +           A     +       +      A  +   E   +        
Sbjct: 112 -------ARVAKETVGKVVAGNSYLSTQDGYYVMGWAADQAAVQAGTEPFPVNDT----- 159

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
                 K  T +   A   +                      N       S G  ++   
Sbjct: 160 ------KTGTITGARALSPIQLNTRAEADGQATTAAVVRANINALATTTQSLGIPVWGPE 213

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                 +   S T   ++  +    V  + N  +                          
Sbjct: 214 VTTTAADGTTSSTWPRQNVSLEFTPVAGTQNSWTVAVSDPNGGT---------------- 257

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   + ++       +   P            N     I+  I    Q        
Sbjct: 258 ----TGTATPAQVTFNGDGTLLSPDDGQLAVAVTYANGTTGTIAVDIDALTQVSGATQIR 313

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
               +  K+      N+     L   Y +          +     N  L    +N     
Sbjct: 314 NLDTNGYKEGSLISTNIDASGVLSGTYSNGQTLPLYKLALTDFQANDHLEAIGKNLYRAS 373

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +            +  V   ++        V+L ++ S +I  + +Y+ S  +    D+M
Sbjct: 374 DAAGESRIFSADSAASVGTTVTSGALEQSTVDLGDQFSKMITTQTAYSSSATVFRTCDEM 433

Query: 472 LQTLLEGVK 480
            QT+    +
Sbjct: 434 SQTVSGLKR 442


>gi|261837904|gb|ACX97670.1| flagellar hook protein [Helicobacter pylori 51]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRTLIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITHNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRTLIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|217034494|ref|ZP_03439905.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10]
 gi|216943035|gb|EEC22514.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++       N              NI N +   +             V            
Sbjct: 1   MIRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|257871297|ref|ZP_05650950.1| flagellar hook protein [Enterococcus gallinarum EG2]
 gi|257805461|gb|EEV34283.1| flagellar hook protein [Enterococcus gallinarum EG2]
          Length = 312

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 5/277 (1%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 N   V       LF+ +                  N   I   V + +  +   
Sbjct: 36  VSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLGGINATQIGLGVQTGSIDTINT 95

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-NSENVPGLFIADGIKDLD 327
            G  ++  +  D  +      + +       ++  +D     +S           +    
Sbjct: 96  VGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGAFVRDSNGTLTNSDGMQVLGRS 155

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               Q +      +     +        S+      N + L      I+       K   
Sbjct: 156 VTGGQPVVYDDNFDENTALSGQETVSPLSIPSTLTVNGETLTYNSMAIDANGLVLAKYGN 215

Query: 388 FDPVAGINTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              V G     T              +++ + S +  +          +         V+
Sbjct: 216 QTFVMGKVGVATFNNPEGLEKVGGNNYVQTSNSGNPIVAGPGNNGAGTLQAGALEMSNVD 275

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L  E + +I   ++Y  +++ I  +D+MLQ LL   +
Sbjct: 276 LSTEFTEMIIASRAYQANSRSITTSDEMLQELLNLKR 312



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/180 (6%), Positives = 34/180 (18%), Gaps = 16/180 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50
           S+L       +   N   +   +  NI N +   +     +                  +
Sbjct: 14  SMLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGL 73

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDHYNNSPTHYIS 105
             +        +    +   ++    Q   +S +                   +      
Sbjct: 74  GGINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDG 133

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                      N     +    +   + VV + N         +             +  
Sbjct: 134 AFVRDSNGTLTNSDGMQVLGRSVTGGQPVVYDDNFDENTALSGQETVSPLSIPSTLTVNG 193


>gi|261339376|ref|ZP_05967234.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316]
 gi|288318177|gb|EFC57115.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316]
          Length = 402

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 92/412 (22%), Gaps = 13/412 (3%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                S +                SA   + +    +      S       ++      T
Sbjct: 3   FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFT 62

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                          ++       DA+  +    +   +      +VN      T     
Sbjct: 63  DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPVA 122

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                 Q     Q IS    +               + T           F+  N  T  
Sbjct: 123 GTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNST----DTAPTKAFDATNPDTYN 178

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            +      D    + N      K    A      +           +A  L  + S    
Sbjct: 179 KKGTVTVFDSQGNAHNMNLYYVKDATPANSWKVYAQDGSVAGSPVSLATTLTFNASGVLT 238

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              N                                Q     + +    +  K       
Sbjct: 239 GGDNVNITT-------ATVPGATPATFAMSFANSMQQNTGANNIVATNQNGYKPGDLVSY 291

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     ++ +Y +   +      +A    N  L     N   W     S    L     
Sbjct: 292 QINDDGSVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNV--WSATQSSGVALLGTAGS 349

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 GNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401



 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 81/396 (20%), Gaps = 9/396 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  + +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +      VQ               A K        +    ++             
Sbjct: 116 LTGYPVAGTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNSTDTAPTKAFDATNPD 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           + +                  +  +      N+  V                      + 
Sbjct: 176 TYNKKGTVTVFDSQGNAHNMNLYYVKDATPANSWKVYAQDGSVAGSPVSLATTLTFNASG 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                ++  I    V  ++    A+            +++V   QN       V      
Sbjct: 236 VLTGGDNVNITTATVPGATPATFAMSFANSMQQNTGANNIVATNQNGYKPGDLVSYQIND 295

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +   +   S     +     + +  N            +    S  + L   GS +   L
Sbjct: 296 DGSVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTL 355

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            N    A   DL     +       +   A      
Sbjct: 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 391


>gi|317014278|gb|ADU81714.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282
            ++              +++  S      +     +R                      +
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V     + +      +   ++      N   +               L  G S +     
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                        +  +              L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 109/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +    +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434


>gi|308063336|gb|ADO05223.1| flagellar hook protein FlgE [Helicobacter pylori Sat464]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|15611871|ref|NP_223522.1| flagellar hook protein FlgE [Helicobacter pylori J99]
 gi|11386868|sp|Q9ZKY0|FLGE_HELPJ RecName: Full=Flagellar hook protein flgE
 gi|4155354|gb|AAD06366.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99]
 gi|307637557|gb|ADN80007.1| Flagellar hook protein [Helicobacter pylori 908]
 gi|325996148|gb|ADZ51553.1| Flagellar hook protein [Helicobacter pylori 2018]
 gi|325997744|gb|ADZ49952.1| Flagellar hook protein [Helicobacter pylori 2017]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/438 (9%), Positives = 114/438 (26%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR--------------------DSV 282
            ++              +++  S      +     +R                      +
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           V     + +      +   ++      N   +               L  G S +     
Sbjct: 523 VGGSAARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                        +  +              L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 109/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAVFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +    +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434


>gi|154686045|ref|YP_001421206.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens
           FZB42]
 gi|154351896|gb|ABS73975.1| FlgE [Bacillus amyloliquefaciens FZB42]
          Length = 258

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 60/211 (28%), Gaps = 1/211 (0%)

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
            +     + +S           +  V      +      +       +            
Sbjct: 48  TVAGGSNVTNSKQIGLGAATSSIDVVHSTGAPQATQNKTDLAIDGDGYFQINTGAGIVYT 107

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
             G            ++  +L   G        + K+ +   D    Y D+ ++      
Sbjct: 108 RAGNFGKDNQGNLVTTDGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDEVHDAGQ 167

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM-KSQVVFNHISESYSNTVGVNLQEELS 449
           +  +    +          + E   S +        +     +   Y     V+L +E +
Sbjct: 168 IGLVTFPNSAGLEKIGGNLYRESLSSGAASAVTTPGENGTGKLLAGYLEMSNVDLTDEFT 227

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +I  ++ +  ++K+I  +D++LQ L+   +
Sbjct: 228 EMIVAQRGFQSNSKIITTSDEILQELVNLKR 258



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/182 (6%), Positives = 32/182 (17%), Gaps = 7/182 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57
           +L       +   N   +   I  NI N +   + +                  V   + 
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60

Query: 58  ENKNMFDKVL--HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    +     + A    +         +     +                 +   
Sbjct: 61  IGLGAATSSIDVVHSTGAPQATQNKTDLAIDGDGYFQINTGAGIVYTRAGNFGKDNQGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                  L K             + S      +      +   +   +       +   +
Sbjct: 121 VTTDGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDEVHDAGQIGLVTFPNSAGLE 180

Query: 176 AI 177
            I
Sbjct: 181 KI 182


>gi|222100099|ref|YP_002534667.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM
           4359]
 gi|221572489|gb|ACM23301.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM
           4359]
          Length = 268

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 6/218 (2%)

Query: 267 VPKGKIKALLQIRDSVVPIFQ---NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
               K         S +P      + +   A   I +    +      +          I
Sbjct: 53  YQYVKNAGTPTAATSTLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQI 112

Query: 324 KDLDNKLCQGISETICVNPQ-YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           +  D ++      +  V+ +      + L     ++        N++    +     D  
Sbjct: 113 QLQDGRIAYTRDGSFKVDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGT 172

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        L     N   ++    S      +  Q  F  I + +     V
Sbjct: 173 IQQLGTITLVRFVNPSGLKSIGDNL--YIATPASGDPIEGVPGQDGFGAIKQGFLEKSNV 230

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++  E+  +I  +++Y  ++++I   D+ML+T     +
Sbjct: 231 DVVREMVDMITAQRAYEFNSRVIQTADEMLRTATNVKR 268



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 51/215 (23%), Gaps = 27/215 (12%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------ 43
           S++     A    +    +  +I  N+ N D   Y +                       
Sbjct: 7   SMMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAAT 66

Query: 44  TISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
           +  P  + V                      +A+        F  ++             
Sbjct: 67  STLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQ------LQDGRIA 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  +   E      +  +L   +      V  N +       +++    +++    
Sbjct: 121 YTRDGSFKVDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQQLGTIT 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                  S L  + D +   T +  D  + +  +D
Sbjct: 181 LVRFVNPSGLKSIGDNLYIATPASGDPIEGVPGQD 215


>gi|92114098|ref|YP_574026.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043]
 gi|91797188|gb|ABE59327.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043]
          Length = 387

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 112/473 (23%), Gaps = 88/473 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F+++ +  N AS Q  +I  NI N+                                  
Sbjct: 2   GFSQSLSGVNAASSQLDTIGNNIANSQTVG--------------------------FKSS 35

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +         Q L        +               ++   D    +++N        
Sbjct: 36  SVQFADIFANSQGLGTRVAGKLQDFGTGSLETTGRGLDLAIAGDGFFQFTQNEQLAYSRN 95

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  + +        AR   +           + +     +     +N   +    +  
Sbjct: 96  GQLSMSADGYFENAQGARLTDQQGEPLQVTQFSQGAQATTGVETAFNLNAETEALAPNNF 155

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +     DQ D      +      ++   ++  + YT  G   +E                
Sbjct: 156 N----QDQSDTYSYVTNAGTVYDSLGVAHDMSLYYTKTGENDWEVRAA------------ 199

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
                                +  G     +   +S VP     L      L    ++ D
Sbjct: 200 -----------------LDGEMADGGAAQSISFNESGVPDVDTALSFNFGDLGNGSADFD 242

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            I  +         A  +++                                +    +  
Sbjct: 243 NIEVDLAGTTQYGEAFELREFA---------------------------QDGNASGTFVG 275

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +    +++ +Y +  ++      +A       L     N   W     S +  L    
Sbjct: 276 VEITENGEVLANYSNGNSEAVGTVGMANFRNPEGLEPQGDNL--WAATQESGAALLGQAG 333

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +         V+L +EL  +I  ++++  +N  I     +L+T+   
Sbjct: 334 TGQLGSLESGTLEASNVDLTQELVDMIIAQRNFQANNNAIQTQSDILETVTNL 386


>gi|317011083|gb|ADU84830.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              I++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVTVNQYGMFEINNKDNKNIIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/436 (8%), Positives = 103/436 (23%), Gaps = 41/436 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSD 417
           +  ++S   +    + 
Sbjct: 401 DNYQDSAASIGVTVNQ 416


>gi|296102908|ref|YP_003613054.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057367|gb|ADF62105.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 402

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 94/412 (22%), Gaps = 13/412 (3%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                S +                SA   + +    +      S       ++      T
Sbjct: 3   FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDFT 62

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                          ++       DA+  +    +   +      +VN      T     
Sbjct: 63  DGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVA 122

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                 Q     Q I+    I T +         +               F+  N  T  
Sbjct: 123 GTPSTVQTGANPQPIN----IPTTLMAAKATTTASQQINLNSTDTAPTTAFDPANPDTYN 178

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
            +      D    + N      K    A      +           +A  L  + +    
Sbjct: 179 KKGTVTVFDSQGNAHNMNLFYVKDATPANSWKVYAQDGSVAGSTASLATTLTFNNNGTLI 238

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
             GN                                Q     + +    +  K       
Sbjct: 239 GGGNINLTT-------ATIPGATPATFAMSFANSMQQNTGANNIVGTSQNGFKPGDLVSY 291

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +     ++ +Y +   +      +A    N  L     N   W     S    L     
Sbjct: 292 QINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNV--WSATQSSGVALLGTAGS 349

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 350 GNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 81/396 (20%), Gaps = 9/396 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  + +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRMVDA------NGSVFYSRNGQFKLDENRNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +      VQ               A K        +    ++             
Sbjct: 116 LTGYPVAGTPSTVQTGANPQPINIPTTLMAAKATTTASQQINLNSTDTAPTTAFDPANPD 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           + +                  +  +      N+  V                      N 
Sbjct: 176 TYNKKGTVTVFDSQGNAHNMNLFYVKDATPANSWKVYAQDGSVAGSTASLATTLTFNNNG 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +   +  +    +  ++    A+            +++V   QN       V      
Sbjct: 236 TLIGGGNINLTTATIPGATPATFAMSFANSMQQNTGANNIVGTSQNGFKPGDLVSYQIND 295

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +   +   S     +     + +  N            +    S  + L   GS +   L
Sbjct: 296 DGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALLGTAGSGNFGTL 355

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            N    A   DL     +       +   A      
Sbjct: 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 391


>gi|308184654|ref|YP_003928787.1| flagellar hook protein FlgE [Helicobacter pylori SJM180]
 gi|308060574|gb|ADO02470.1| flagellar hook protein FlgE [Helicobacter pylori SJM180]
          Length = 718

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVTINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 109/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +    +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVTINQYGMFEINNKDNKNVIKEN 434


>gi|295706277|ref|YP_003599352.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319]
 gi|294803936|gb|ADF41002.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319]
          Length = 263

 Score = 83.9 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G+++        ++     +     +    +     +A    N  L +   N        
Sbjct: 140 GNINIPSTSKSYSIGADGKVNIIDANGNISSNQTVELAKFANNEGLQKAGGNLFAQ--SV 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +             S      V+L EE + +I  ++ +  + ++I  +D++LQ 
Sbjct: 198 NSGGPLVGAPGANGTGSFVSSALEMSNVDLSEEFTDMIVAQRGFQANTRIITTSDEILQE 257

Query: 475 LLEGVK 480
           L+   +
Sbjct: 258 LVNLKR 263



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/148 (6%), Positives = 26/148 (17%), Gaps = 13/148 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---------NVTVV 53
           +L       +   N   +   +  NI N +   Y +  T                     
Sbjct: 1   MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRD 109
              ++   +  ++    +                    +          +          
Sbjct: 61  GVNAKQVGLGSQIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVRDGVTNYYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQN 137
                        + KT   N      +
Sbjct: 121 DSSGNLVTGDGLYVQKTGGGNINIPSTS 148


>gi|297380070|gb|ADI34957.1| flagellar hook protein FlgE [Helicobacter pylori v225d]
 gi|315586465|gb|ADU40846.1| flagellar hook protein FlgE [Helicobacter pylori 35A]
 gi|317182178|dbj|BAJ59962.1| flagellar hook protein FlgE [Helicobacter pylori F57]
          Length = 718

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|268680907|ref|YP_003305338.1| flagellar hook protein FlgE [Sulfurospirillum deleyianum DSM 6946]
 gi|268618938|gb|ACZ13303.1| flagellar hook protein FlgE [Sulfurospirillum deleyianum DSM 6946]
          Length = 851

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 79/300 (26%), Gaps = 6/300 (2%)

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
             +     DQ   L          +    ++    + +  GT    T  R      M S 
Sbjct: 554 GTNFLTEDDQSLYLTVTGLTNSKNNISTNDSFTTSMSSIQGTLTSGTATRSTQSLYMASL 613

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
             +++          +                  +  +V       L E  + ++     
Sbjct: 614 ASSTDIYDSLGSKHTIRFQYTKTGFTETGGTEWSVTVTVPEPGDINLGEEPKNVVTGSIR 673

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGIS----ETICVNPQYRSNPSFLRDGGSVSK 359
            +     +   P                  ++      +     +  + S          
Sbjct: 674 FNSDGSLATYTPRNLTYTANNGSTANQIVQLNFGSVGQLDGITSFDKDSSTTNINQDGYT 733

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +I  + +  +       ++    N  L     N   +++ + S   
Sbjct: 734 GGDLSGLSVDETGTIIGSFTNGRSFALAQVAMSTFTNNGGLESDGGNC--YIQTSNSGDP 791

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                       +  S      V+L   L+ LI +++ Y  ++K I   D+ML TLL+  
Sbjct: 792 VFGQAGTGGKGSVQSSSLEMSNVDLSRSLTQLIVIQRGYQANSKTITTADEMLNTLLQLK 851



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/405 (5%), Positives = 75/405 (18%), Gaps = 32/405 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++                      NI N +   Y       +                  
Sbjct: 1   MMRALWAGVTGLQAHQIAMDVESNNIANVNTTGYKYSRANFSNLLSQTVSIATAPQGELG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                      T  +  K      +               F  +     + D        
Sbjct: 61  GKNSMQIGLGTTISTVTKIFEQGSIETTDKDTDLAISGDGFFVV-----SPDGGTTYKYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                         + +  I+   + D     +   +  +  +              +S 
Sbjct: 116 RNGDFSFDANGNFVDSNGYIIQGWLRDQETGQIDTTSPISNILITPGYTTPANATSIVSI 175

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                S  +V  +     +          D   ++               ++N   ++ +
Sbjct: 176 KANLDSGTSVGTNKTSIYSLDSKSGWVDADNDGIMDA-------AEVHNEDDNADTIFNN 228

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +       V   + F+        ++    +I      + +            L +  + 
Sbjct: 229 NTEVYERGVDFGVLFDSDGEALSLTDGQGTWISYAQAKTERIEVEADASDVTHLTMTING 288

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
             I              +  + + +A     +     +             I  +   + 
Sbjct: 289 TTITTGTTGISTSTYSTTTEKNEVVAAQIAALINAQTSVTGVTATITSGNYIVLSNDNST 348

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
              ++   ++     +                  +   S   N  
Sbjct: 349 GTEASTKNIKMDVDTTATSASTGFVDTQIITAYQYTYSSSPTNTS 393


>gi|229544402|ref|ZP_04433460.1| protein of unknown function DUF1078 domain protein [Bacillus
           coagulans 36D1]
 gi|229324887|gb|EEN90564.1| protein of unknown function DUF1078 domain protein [Bacillus
           coagulans 36D1]
          Length = 254

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 61/236 (25%), Gaps = 1/236 (0%)

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
            T  +N   ++       + +               +            +   + +    
Sbjct: 20  DTIGNNIANVNTYGYKKGRVTFKDAISQTLASATPGTSAQQVGLGSQIGSIDTVDTSGSP 79

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           +      +          + D +N            + +   N       G+  +     
Sbjct: 80  ESTGRPLDFAITGDGYFRVADGNNTYYTRAGNFYFDDNRRLVNSEGFTVLGTNGQAITLG 139

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
               +          D          +A       L +   N       N   +  +   
Sbjct: 140 ANVKSFSVATDGTITDQDGNTIGTISIATFQNPAGLTKVGGNLYTTTNSNA-GTVTVSQP 198

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Q     I   Y     V+L EEL+ +I  E+ +  + ++I  +D++LQ L+   +
Sbjct: 199 GQNGAGTIKSGYLEMSNVDLSEELTNMIVAERGFQANTRIITTSDEILQELVNLKR 254



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 44/232 (18%), Gaps = 11/232 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPENVTVVTQ 55
           +L       +   N   +  +I  NI N +   Y +              S    T   Q
Sbjct: 1   MLRSLYSGVSGMKNFQTELDTIGNNIANVNTYGYKKGRVTFKDAISQTLASATPGTSAQQ 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 +        S +         F    +        NN+                
Sbjct: 61  VGLGSQIGSIDTVDTSGSPESTGRPLDFAITGDGYFRVADGNNTYYTRAGNFYFDDNRRL 120

Query: 116 KNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            N     +       I     V      +   +     +    I +              
Sbjct: 121 VNSEGFTVLGTNGQAITLGANVKSFSVATDGTITDQDGNTIGTISIATFQ-NPAGLTKVG 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
            N      + +         Q      K   +   +  +      ++    G
Sbjct: 180 GNLYTTTNSNAGTVTVSQPGQNGAGTIKSGYLEMSNVDLSEELTNMIVAERG 231


>gi|254457547|ref|ZP_05070975.1| flagellar hook protein FlgE [Campylobacterales bacterium GD 1]
 gi|207086339|gb|EDZ63623.1| flagellar hook protein FlgE [Campylobacterales bacterium GD 1]
          Length = 705

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/445 (10%), Positives = 130/445 (29%), Gaps = 13/445 (2%)

Query: 42  MTTISPENVTVVTQR-SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              I+   V +     +      +  + A ++      +  S +A + +   +++ ++S 
Sbjct: 266 ELGIAGNAVNITAAAGATVAETANNYVSAINAQTAITGITASVDASQVITLINNNGSSSA 325

Query: 101 THYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
           +H I+     S    +   S          ++   +   + +   +  +R   + E   +
Sbjct: 326 SHNINLATVTSGSGLATGTSTTAHRYQYNTSSAASLAGGDKTFTSMADLRKWMEDEANNQ 385

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                     +      +     S  D +D   +      K S  +  S      N   +
Sbjct: 386 GGATNGITIAVNDAGKFVIQNPNSGVDDYDMNLKVTAYTNKTSGSVVTSNTRFTRNMEAM 445

Query: 220 YT-----SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
            +     S G    ++     +   ++ +      + + ++    + +  +      + +
Sbjct: 446 NSVLPKASGGQAFSQSFNAATHSSSIDIFDSLGSKHTLRMEFRKTALDTSTGSSWAMLVS 505

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           +            ++        I   ++      N  N+          D    L  G 
Sbjct: 506 VPAPATIDTTAPLDE----KTGSIRFNNDGSLATYNPPNISFSGNNGSAPDQQVSLSFGT 561

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           + +      + S  S                  +     L+  + +  +       +A  
Sbjct: 562 ANSFDGMTSFDSTSSTSGISQDGYTGGDLVGIRIDQSGTLVGSFSNGRSFGLAQIGMAKF 621

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
             N  L     N   +++   S    +   +      I  +      V+L   L+ LI +
Sbjct: 622 TNNEGLSVEGGNI--FIQTANSGDPIIGTAATAGRGFIQAAALEASNVDLSRALTQLIII 679

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGV 479
           ++ +  + K I  +D++LQTL+   
Sbjct: 680 QRGFQANGKTITTSDQLLQTLIGLK 704



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/399 (6%), Positives = 86/399 (21%), Gaps = 4/399 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   +          NI N +   +       +            +  +  
Sbjct: 1   MLKSLFSGVSGLQSHQVAMDVESNNIANVNTTGFKYSRANFSDLLAQTKA--IATAPQGA 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            +    +   +   +   N                         
Sbjct: 59  LGGKNPVQVGLGSTISSMTRIFSQGSV--QNSDKNTDVAIQGDGFYIVSPDGGNTYKYTR 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G    D     V N     +   +       +    I+++       T  + + +    
Sbjct: 117 AGDFKFDAGGNFVDNNGFVTQGWLRDPISGKVDSTAPITDINIPPGLTTPASASQEVVLK 176

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  ++   ++      +  +    +     + N   +   +   +F  V    + ++   
Sbjct: 177 ANLNSGPNVESFSPAYEIKTGTTNVQPAAIDANGNAISAGNIGVMFNEVGEAFSLQQDQG 236

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             V+  S+ +    V+ ++             +     ++       + E A   + + +
Sbjct: 237 VWVSFLSSSLTAGTVIANTAMDITFNIDPELGIAGNAVNITAAAGATVAETANNYVSAIN 296

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +  I G + +V    +   I +  +           V                      
Sbjct: 297 AQTAITGITASVDASQVITLINNNGSSSASHNINLATVTSGSGLATGTSTTAHRYQYNTS 356

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                  G     +            +   G    +T+ 
Sbjct: 357 SAASLAGGDKTFTSMADLRKWMEDEANNQGGATNGITIA 395


>gi|255305280|ref|ZP_05349452.1| flagellar hook protein [Clostridium difficile ATCC 43255]
          Length = 331

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 80/261 (30%), Gaps = 8/261 (3%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             + G       P D+  +      V  +   ++      + + G     G ++ +   R
Sbjct: 79  DMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAAAGPLQGVKGGR 138

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
                 +      M      +     P A  +   P   +   ++ +  K     +    
Sbjct: 139 LVNGDGYMLVGQIMTGKYDANKGTFTPDAKPAAGWPNEPVVIPLQSISPKDGTVQNVLEY 198

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              +  +    L D      +F++++ + +    + N    + +                
Sbjct: 199 NISKDGTIEFLLSD--GQRTQFVYDIPDNSEVGVVPNPAIATDSGKLQKVQTYAFQNPAG 256

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N   +     S    +         +I +       V++ EE + +I   +S+ 
Sbjct: 257 LDAEGGNL--FKPSANSGDPQIA----GATGNIIQGAIEASNVDIAEEFTEMIIASRSFQ 310

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K+I  +D++LQ ++   +
Sbjct: 311 ANSKIISTSDEILQEIINLKR 331



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/309 (7%), Positives = 65/309 (21%), Gaps = 14/309 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           ++       +       +   I  N+ NA   ++ +     T S                
Sbjct: 1   MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T + Q      +           +             +                     
Sbjct: 61  GTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-RFLS 168
                +       +    + N +  +        +    +     + +          + 
Sbjct: 121 DTGFKAAAGPLQGVKGGRLVNGDGYMLVGQIMTGKYDANKGTFTPDAKPAAGWPNEPVVI 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L  ++                    + LL        +  I  N+   VV      T  
Sbjct: 181 PLQSISPKDGTVQNVLEYNISKDGTIEFLLSDGQRTQFVYDIPDNSEVGVVPNPAIATDS 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             + +   +   N   + +E   +F         Q +      I+  ++  +  +     
Sbjct: 241 GKLQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGNIIQGAIEASNVDIAEEFT 300

Query: 289 QLDEMARVL 297
           ++   +R  
Sbjct: 301 EMIIASRSF 309


>gi|258514011|ref|YP_003190233.1| hypothetical protein Dtox_0696 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777716|gb|ACV61610.1| protein of unknown function DUF1078 domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 263

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/272 (8%), Positives = 66/272 (24%), Gaps = 17/272 (6%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                N+   +                +        +        +   V  +       
Sbjct: 9   VSGMKNHQTRMDVIGNNIANVNTTGYKSSRVQFKDVLGQTIAGGQVASGVTIAGINKDFT 68

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +G   A     D  +      + +        +  +D      +    +          +
Sbjct: 69  QGSQTATENSTDLYIHGNGFFIVQDPGDPSILYYTRDGSFHVDDTGQLVNSLGYKVCSSD 128

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +    T+ ++         +      S       +      + +N   +  N  + +
Sbjct: 129 GSTEIDPFTVPLDSINIDMNGKISYCTGGSTTPEDGGQIGLAMFNDLNRLINKGNNLYQY 188

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           D     + +                             +    +  +      V+L  E 
Sbjct: 189 DNKPNTDGSDP-----------------AEPIFGAPGSIGLGTVISNNLEMSNVDLTNEF 231

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           S +I  ++ Y  ++K+I  +D+MLQ L+   +
Sbjct: 232 SNMIITQRGYQANSKVITTSDEMLQELIGLKR 263



 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/126 (10%), Positives = 27/126 (21%), Gaps = 11/126 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------ISPENVTVVTQ 55
           ++       +   N   +   I  NI N +   Y                  +  + VT 
Sbjct: 1   MIRSLYSGVSGMKNHQTRMDVIGNNIANVNTTGYKSSRVQFKDVLGQTIAGGQVASGVTI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              NK+       A  ++         F  +++        +                  
Sbjct: 61  AGINKDFTQGSQTATENSTDLYIHGNGFFIVQD----PGDPSILYYTRDGSFHVDDTGQL 116

Query: 116 KNLSED 121
            N    
Sbjct: 117 VNSLGY 122


>gi|254973919|ref|ZP_05270391.1| flagellar hook protein [Clostridium difficile QCD-66c26]
 gi|255091306|ref|ZP_05320784.1| flagellar hook protein [Clostridium difficile CIP 107932]
 gi|255312963|ref|ZP_05354546.1| flagellar hook protein [Clostridium difficile QCD-76w55]
 gi|255515722|ref|ZP_05383398.1| flagellar hook protein [Clostridium difficile QCD-97b34]
 gi|255648816|ref|ZP_05395718.1| flagellar hook protein [Clostridium difficile QCD-37x79]
 gi|260682035|ref|YP_003213320.1| flagellar hook protein [Clostridium difficile CD196]
 gi|260685633|ref|YP_003216766.1| flagellar hook protein [Clostridium difficile R20291]
 gi|306518931|ref|ZP_07405278.1| flagellar hook protein [Clostridium difficile QCD-32g58]
 gi|260208198|emb|CBA60542.1| flagellar hook protein [Clostridium difficile CD196]
 gi|260211649|emb|CBE01907.1| flagellar hook protein [Clostridium difficile R20291]
          Length = 327

 Score = 83.9 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 71/261 (27%), Gaps = 12/261 (4%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             + G       P D+  +      V  +   ++      + + G     G +K +   R
Sbjct: 79  DMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGR 138

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
                 +  Q             E           P +     I   D  +   +   I 
Sbjct: 139 LVNGDGYMLQGVIYDGEYKADTGEFIKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNIS 198

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            +       S  +    V                          + + F   AG++    
Sbjct: 199 KDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQKVQTYAFQNPAGLD---- 254

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
               A     +     S    +         +I +       V++ EE + +I   +S+ 
Sbjct: 255 ----AEGGNLFKPSANSGDPQIA----GATGNIIQGAIEASNVDIAEEFTEMIIASRSFQ 306

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K+I  +D++LQ ++   +
Sbjct: 307 ANSKIISTSDEILQEIINLKR 327



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 24/281 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +       +   I  N+ NA   ++ +     T S                
Sbjct: 1   MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                +        S NK+M    +   +           +  +    +     + S   
Sbjct: 61  GTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                  + +   KN+    L        + V+ +    A   + I+    K  E  +  
Sbjct: 121 DTG--FKAADGALKNIKGGRLVNGDGYMLQGVIYDGEYKADTGEFIKKGDAKGKEPIVIP 178

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLD--QRDVLLQKISEIIGISTIVRNNNDMVVY 220
           L+    +   V + +++  +        L   QR   +  I +   +       + +   
Sbjct: 179 LQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGT 238

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
                T     P  ++ E  N +  ++ S    I G   + 
Sbjct: 239 IQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGNI 279


>gi|283956177|ref|ZP_06373662.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792331|gb|EFC31115.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 848

 Score = 83.5 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/340 (10%), Positives = 94/340 (27%), Gaps = 10/340 (2%)

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             D ++ +++ +++   F       +  I       +     +  +++     +      
Sbjct: 511 MNDINQNVKVVVNSSGHFAISNANEDSTIPSGAGVNNGNAQNVAAKNMSFNITAYSNKEG 570

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T+  N+    ++ +    L        + +   S           +        Q     
Sbjct: 571 TVSTNDAFTAIFKAWDGPLVTGGSIKESEQLKLSSFSAGLEIYDSLGSKHTLEVQFVKQS 630

Query: 269 KGKIKA--LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
             +        I     P   N   E    +I   +  +     +   P           
Sbjct: 631 TTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGSARFNNDGSLASYTPKTISFSPNNGA 690

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK------NLAGYPDLINHYCD 380
                  +S     +     + +        +     +         +    +++  + +
Sbjct: 691 APNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTN 750

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                     +A +  N  L E   N   +     S +  +          +  S     
Sbjct: 751 GKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMS 808

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 809 NVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 848



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/428 (8%), Positives = 86/428 (20%), Gaps = 45/428 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GQNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGYVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K +  +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSTNLYGLDSVHGYNTKTNKAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNS-YTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
             +   ++ + GT L     + I     ++ YT  +    +F      + N         
Sbjct: 233 GVDAGALFNAKGTGLNLRDGQGIWVSYADAKYTTNTGGQKVFDPNNTSTQNPVIFWGDKD 292

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
            K  L I  + V IF   +  +   +             +                +   
Sbjct: 293 NKVTLDITLNGVNIFNADIQSLDDAIA------YINTFTAPTDTREGTGVKAVKKSDGSG 346

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                              L    + S   + NV    G         ++   N  +   
Sbjct: 347 IEFVNDNADGTTDNMKNIDLTVNSNNSAGEIQNVTYNQGQKKFEVAQMNTAKTNSAWISG 406

Query: 392 AGINTNVT 399
                   
Sbjct: 407 DNNGKTGG 414


>gi|327441046|dbj|BAK17411.1| flagellar basal body rod protein [Solibacillus silvestris StLB046]
          Length = 329

 Score = 83.5 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 73/237 (30%), Gaps = 13/237 (5%)

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
             T        +G   ++   ++    +       R+  +     +        + ++  
Sbjct: 106 DATDFVQGDPANGEPATAGGYTSTLYTRAGNFYMDRNGFLVNGDGKYLVGFAGDVTAYDA 165

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
            +P+                 ++          T  +  Q  + PS +R           
Sbjct: 166 INPLNAPGSG-----FEQNKPEVAGGTNLIDPATGELIAQGGTTPSPIRIP------TTA 214

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
              +++    +         +      +A    +  L +   N   +     S +    +
Sbjct: 215 QSMSISQDGSISFVDSAGDLQYAGTIVLAKFANSGGLEKTGSNY--FQTTPNSGAIYAQL 272

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +Q     I+  +     V+L EE + +I  ++ +  ++++I  +D++LQ L+   +
Sbjct: 273 ATQDGIGSINSGFMEMSNVDLSEEFTEMIVAQRGFQANSRIITTSDEILQELVNLKR 329



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/222 (7%), Positives = 39/222 (17%), Gaps = 32/222 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +L       +   N   +   I  NI N +   Y +  T+               + +  
Sbjct: 1   MLRSMYSGISGLKNFQTKLDVIGNNISNVNTYGYKKERTIFKDLISQTQSGASGPSTTRG 60

Query: 49  NVTVVTQ------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY------ 96
            V  +         + +       +      +        F  + +              
Sbjct: 61  GVNAIQVGLGSQLAAIDTIHNAGAMQTTGRTLDLAISGDGFFMVADATDFVQGDPANGEP 120

Query: 97  ------NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                  ++              +  N     L     D       N   +     +   
Sbjct: 121 ATAGGYTSTLYTRAGNFYMDRNGFLVNGDGKYLVGFAGDVTAYDAINPLNAPGSGFEQNK 180

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                    I      L        +      +        D
Sbjct: 181 PEVAGGTNLIDPATGELIAQGGTTPSPIRIPTTAQSMSISQD 222


>gi|313905162|ref|ZP_07838531.1| flagellar hook-associated protein FlgK [Eubacterium cellulosolvens
           6]
 gi|313470065|gb|EFR65398.1| flagellar hook-associated protein FlgK [Eubacterium cellulosolvens
           6]
          Length = 668

 Score = 83.5 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/421 (10%), Positives = 124/421 (29%), Gaps = 29/421 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
             A F  A +     S++     +N+ N   + Y R++  T+                  
Sbjct: 5   TFAGFTTALSSLRANSKKLDVTGQNLANMTTEGYTRQEIKTSSLNYENPTSFYLNENDVN 64

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V++           D      ++ +G    + +       +  D+   ++      
Sbjct: 65  VGFGVSIDRMAQLRDQFLDTQYRTQNAKLGYNETISASLDALSGLL-DETKQDAIHASFD 123

Query: 106 KLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE---- 159
           K++++L         ++ +    +    +     FN +A  ++    +    I+      
Sbjct: 124 KVQEALTKMQDPSRVNDPVYEGELRSRMQATANLFNQAALNIETSMRNEYNNIDGAGSSE 183

Query: 160 ---ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
              +  + + LS++  +N  IK      + A +  DQR++ + ++S+II I         
Sbjct: 184 NGYVDKINQLLSQIGELNVDIKRNQMLGNPALELQDQRNLAIDELSKIIPIEVSYFTEKY 243

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                +  T + +      ++      +   E   + ID +  +++     P  +   L+
Sbjct: 244 ETTDRNGNTVVRDHGLNYDSYGNPTGKSGFPE--DLKIDLIYTTTDANGKNPVTQRITLV 301

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              D+         +  +  ++   +      GN                + +  Q +  
Sbjct: 302 NGSDTRADNGDKVANYGSVKVLVDGNVAYDEHGNRMANATYDGKRNPDTGEVQQVQIVFN 361

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                  +  N   +    + +                 +   +  + + +      +  
Sbjct: 362 QADSYVVHMENGVLMDSNMNAATGQTTETSIKTDNHVEKDANGNITDFSTLRLGSGSLQA 421

Query: 397 N 397
           +
Sbjct: 422 S 422



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/398 (9%), Positives = 106/398 (26%), Gaps = 9/398 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
             +  + +  D    +P      L +  ++ + N  +     +V    +  V       R
Sbjct: 277 LKIDLIYTTTDANGKNPVTQRITLVNGSDTRADNGDKVANYGSVKVLVDGNVAYDEHGNR 336

Query: 144 EVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                          E+  ++   ++       ++       + +    Q      K   
Sbjct: 337 MANATYDGKRNPDTGEVQQVQIVFNQADSYVVHMENGVLMDSNMNAATGQTTETSIKTDN 396

Query: 204 IIGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
            +         +   +    G      + +    +    +S   + +     +D +  + 
Sbjct: 397 HVEKDANGNITDFSTLRLGSGSLQASLDMLCDSTSSLNNDSIYRSYDYYMNRLDVLANTF 456

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
                    ++       ++               L+ +        G+  +        
Sbjct: 457 ALDMNR-FNQMGVNDTYNNANTSKIVINGSAKDGTLLTADELTKLSNGDYNSSTFTSKDF 515

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
            +           +++         + S     G+       +        D   +  ++
Sbjct: 516 LLLVNSGASNAADAQSASNITAANISISKSWINGTTHIGTYGDPNEGNSSTDTALNMLEA 575

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                            T      +   +L  +  ++ +    ++V+ + I  +     G
Sbjct: 576 MGTTHAAI------GYKTYSNEINSISTYLANDAYNNENSLKSNEVILDGIYSAKDQISG 629

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           V+L EE + ++    SYN + +L+   D+ LQTLL   
Sbjct: 630 VSLDEEAANMMSYVTSYNAAARLMTTIDETLQTLLNIK 667


>gi|322380221|ref|ZP_08054447.1| flagellar hook protein FlgE [Helicobacter suis HS5]
 gi|321147348|gb|EFX42022.1| flagellar hook protein FlgE [Helicobacter suis HS5]
          Length = 619

 Score = 83.5 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 82/299 (27%), Gaps = 6/299 (2%)

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
            +  D    +D L   ++                +   +   L E      +  ++   T
Sbjct: 324 ANKDDGNPTKDNLNIFVTNYASDKVTKNVLFGKTMGALNTAALIEGGVST-STSRLTHAT 382

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             S  + +   G   S         G      A++     +V    ++ +     ++   
Sbjct: 383 HASSVDLVDSLGTKHSMRLEFYKTGGAEWRFRAIVPEPGEIVGSSPDRPNVFEEGVLHFN 442

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
            +      N   +               L  G +                    +  +  
Sbjct: 443 KDGSLAGMNPPVLQFAPHNGSDSPQRITLSFGTAGGFDGITSVDKISETYAIEQNGYQAG 502

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                       L+  + +    +     +A    +  L     +     E + S    +
Sbjct: 503 DLMDVRFDNDGVLLGSFSNGKTLSLAQVALANFANDAGLQADGGSVFS--ETSNSGKALI 560

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +      +S S   +  V+L   L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 561 GAANTGRRGGVSGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 619


>gi|317177302|dbj|BAJ55091.1| flagellar hook protein FlgE [Helicobacter pylori F16]
          Length = 718

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/381 (11%), Positives = 103/381 (27%), Gaps = 4/381 (1%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE-VQKIRADADKEIELE 159
                   + L+      +        I    ++ Q   T     + +  A+  K+  L 
Sbjct: 341 QAGTGAFANFLDGDKDVTAFKYSYTHSISPNADIGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +      S    +N    F+  +K + +   +  ++ +   S     + ++  N    +
Sbjct: 401 DNYQDSAASIGVSINQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGL 460

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T+              F      T     + +     +      S   +   + ++   
Sbjct: 461 NTAS-LIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEP 519

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             +V     + +      +   ++      N   +               L  G S +  
Sbjct: 520 GELVGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFD 579

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                           +  +              L+  + +          +A    +  
Sbjct: 580 GLTSVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAG 639

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N         S    +   +      IS S   +  V+L   L+ LI V++ + 
Sbjct: 640 LQALGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQ 697

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K +  +D++L TLL   +
Sbjct: 698 ANSKAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSINQYGMFEINNKDNKNVIKEN 434


>gi|188527285|ref|YP_001909972.1| flagellar hook protein FlgE [Helicobacter pylori Shi470]
 gi|188143525|gb|ACD47942.1| flagellar hook protein FlgE [Helicobacter pylori Shi470]
 gi|308062194|gb|ADO04082.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20]
          Length = 718

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/438 (10%), Positives = 120/438 (27%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     V         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANVVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 -----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                    V  G     +     +   P L   D     D      ++     +    +
Sbjct: 523 VGGSAARPNVFEGGRLRFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 347 NPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           +   + +  ++ +        +         L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLTQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A +  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANVVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|323492338|ref|ZP_08097491.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546]
 gi|323313385|gb|EGA66496.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 66/254 (25%), Gaps = 2/254 (0%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           T       +++          +  +P   D    S         G    + Q        
Sbjct: 147 TDSMEFVANLDASASVVDQTVNPFDPNNTDSFNSSYTTKVFDSLGNSHTVTQYFTKTAAN 206

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                 ++      + +       +          +            I   +  + Q+ 
Sbjct: 207 SWEVNVQVDGGSTPASTVAMTFNADGTLATPTGSYNVAFPAAGANPMSIDINLAGSTQFG 266

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           ++     +  +           +     +   Y +  ++      +A       L +   
Sbjct: 267 ASFGVSTNNPNGYTSGELAGVRVEDNGMVYATYTNGQSQLQGQVVLADFANPQGLAKV-- 324

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +   W +   S +  + +        ++        V+L  EL  L+  +++Y  + K I
Sbjct: 325 SGTAWTQSFSSGAPIMGVPGSGTLGDLTPGALEGSNVDLTSELVNLMTAQRNYQANAKTI 384

Query: 466 MFTDKMLQTLLEGV 479
              DK+ Q L   V
Sbjct: 385 STNDKLTQALFNAV 398



 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/393 (10%), Positives = 90/393 (22%), Gaps = 7/393 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D                 ++Y    +   L  
Sbjct: 59  NFDKNGSVSGTGRAMDLAINGSGFFITKDTSGQLLYTRSGVFGTDKDNYVTGNTGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D    ++   +   +      A    +    ++NL    S +    +          
Sbjct: 119 YSVDGNNNLLTGASGDIKISTSSLAAKATDSMEFVANLDASASVVDQTVNPFDPNNTDSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N+ ++ V    G+T        +        T+
Sbjct: 179 NSSYTTKVFDSLGNSHTVTQYFTKTAANSWEVNVQVDGGST----PASTVAMTFNADGTL 234

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            + +    +      +N  S                V     N         +       
Sbjct: 235 ATPTGSYNVAFPAAGANPMSIDINLAGSTQFGASFGVSTNNPNGYTSGELAGVRVEDNGM 294

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  +     L     + D  N               + S    +   GS +   L   
Sbjct: 295 VYATYTNGQSQLQGQVVLADFANPQGLAKVSGTAWTQSFSSGAPIMGVPGSGTLGDLTPG 354

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  DL +   +       +   A   +  
Sbjct: 355 ALEGSNVDLTSELVNLMTAQRNYQANAKTISTN 387


>gi|90422624|ref|YP_530994.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18]
 gi|90104638|gb|ABD86675.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18]
          Length = 411

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/399 (10%), Positives = 87/399 (21%), Gaps = 1/399 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  V     +     S + +++  NI N +   Y R  T  +         +  S + 
Sbjct: 1   MSLYGVMRTGGSGMTAQSNKLSAVADNIANVNTTGYKRASTEFSSLILKSGSGSYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    +                 A  +   +P            +    N +
Sbjct: 61  ETQVRYAISDPGTLQYTTSATDLAIQGNGFFAVSNAGGTPFLTRAGSFVPDGQGNLYNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    + N    V     +  EV  I   A +      +     L+    +      
Sbjct: 121 GYYLMGYNLKNGPPNVVANGLTGLEVVNIGQTALEGNPSTKAAATANLNANAGITAGAPN 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T+             V L   +     +       D    T  G           NF  
Sbjct: 181 YTSKTSLVTYDNIGNKVTLDIYAYKTAANAWTMEVYDSADSTGGGFPYTGAPLATGNFSF 240

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S T            + ++   GS              D       +     +   + 
Sbjct: 241 DVSATGKGRLAGGSPTSLSLTIPNGSPFTLDLSSMTQVAADFQFKATVDGNSPSSIDKVE 300

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             ++    A  ++          +  + +            +    S    +   G    
Sbjct: 301 VATDGTMYAIYNDGTRIATYKIPLATVPSPDNLVPEVGNVYSIGINSGNVQVDFAGHSGL 360

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
             +      A   DL N           +   + +    
Sbjct: 361 GIVKAEALEASNVDLANELTAMIESQRGYTANSKVFQTG 399


>gi|288553056|ref|YP_003424991.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4]
 gi|288544216|gb|ADC48099.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4]
          Length = 279

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/278 (8%), Positives = 75/278 (26%), Gaps = 2/278 (0%)

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            + G++ ++R+    +    +  T  + +  +I+      +     +    +   +  ++
Sbjct: 4   TLKGVTDMLRSMYSGISGMRNFQTKLDVIGNNISNVNTAGFKKGRTTFSDMVSQQIAGAS 63

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                 +G          S +        + +        +          +        
Sbjct: 64  GPVVNGRGGTNPRQVGLGSQLATIDTIHTQGSLQNTNRSLDLGISGNGYFRLSDSETGGT 123

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                        +   VN            G  +         ++     +        
Sbjct: 124 TYYSRAGNFYLDEDGYIVNANGLYLLDDSDPGSRIQIAPDSQSFSIGQAGVVNVIDSAGQ 183

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
             +     +A  +    L +   N   +   + S +      +      +         V
Sbjct: 184 LTSPGTISLAYFSNPEGLQKEGDNL--YQVTDNSGAAQRTTPTNDGTGALVAGTLEMSNV 241

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 242 DLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 279



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 36/142 (25%), Gaps = 25/142 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +L       +   N   +   I  NI N +   + +  T  +                  
Sbjct: 11  MLRSMYSGISGMRNFQTKLDVIGNNISNVNTAGFKKGRTTFSDMVSQQIAGASGPVVNGR 70

Query: 45  --ISPENVTVVTQRSENKNM-FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              +P  V + +Q +    +     L   + ++        +  L +     +    +  
Sbjct: 71  GGTNPRQVGLGSQLATIDTIHTQGSLQNTNRSLDLGISGNGYFRLSDS----ETGGTTYY 126

Query: 102 HYISKLRDSLESYSKNLSEDIL 123
                     + Y  N +   L
Sbjct: 127 SRAGNFYLDEDGYIVNANGLYL 148


>gi|2316082|gb|AAC45551.1| hook protein [Campylobacter coli]
          Length = 851

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/350 (11%), Positives = 97/350 (27%), Gaps = 7/350 (2%)

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
           +       +    Q ++    +     ISN     +            T + H     + 
Sbjct: 507 DNANPVFDANDINQAVKVVVTENGNFAISNANETSTRQANAGAGNAQVTTNPHAMSFNIT 566

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
                   +S     +TI ++ +  +V    G  + E+    ++          S  +  
Sbjct: 567 AYSNKQGTVSTNDAFTTIFKSFDGPLVV---GGQIKESEQLKLSAFSAGLEIYDSLGSKH 623

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            ++   V  +            +     + +         +        ++    +    
Sbjct: 624 TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLASYTPR 683

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY- 371
            +          +   KL  G S +        S  +                  +    
Sbjct: 684 TINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTQQDKQLMGYTSGNLKPDAIRVDD 743

Query: 372 -PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
             +++  + +          +A +  N  L E   N   +     S +  +         
Sbjct: 744 KGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRG 801

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  +      V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 802 EMKTAALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 851



 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/441 (7%), Positives = 76/441 (17%), Gaps = 48/441 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  +                    D     +
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDD-----------------QTIDSSRTPQ 155

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +   +      +  +  K       +     R++            T    + +   
Sbjct: 156 NIFIDPGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTG 215

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T   TT    V          S            DG  +  +   A       A   + 
Sbjct: 216 TTQFYTTSKNAVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADAKFTTDKAAGTNVF 275

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D      Q            + +    + G       +   D      N           
Sbjct: 276 DPNSTAAQQANVIFWGNKDIAVNLDITLNGVKIQNANIRSLDEAIAYINTFTAPTDTRDG 335

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              +                              + +           ++   G  +   
Sbjct: 336 TGVKAVKKADGSGIEFVNDNADGTTDNMENIDLTVNSGNSAGEISTIAYNAATGAFSPQG 395

Query: 400 LLEYARNSIGWLEKNRSDSHD 420
            L  A+N+  W+       + 
Sbjct: 396 NLTTAQNNTSWITGTAQAVNR 416


>gi|308183024|ref|YP_003927151.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4]
 gi|308065209|gb|ADO07101.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4]
          Length = 718

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/438 (9%), Positives = 112/438 (25%), Gaps = 26/438 (5%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDI 122
           D  +   SS +  +  + + ++   + +  D               + L++     +   
Sbjct: 286 DSAVSRTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTG 345

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +D  ++V     +    +     +AD        +LR  +     +         
Sbjct: 346 AFANFLDGDKDVTAFKYSYTHSISP---NADIGQFRTTEDLRALIQHDANIVKDPSLADN 402

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +  A       +              +++ N ++ V      ++   V      + +N+
Sbjct: 403 YQDSAASIGVSVNQYGMFEINNKDNKNVIKENLNIFVSGYSSDSVTNNVLFKNAMKGLNT 462

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD----------- 291
            ++              +++  S      +     +R         + +           
Sbjct: 463 ASLIEGGASASSSKFTHATHATSIDVIDSLGTKHAMRIEFYRSGGAEWNFRVIVPEPGEL 522

Query: 292 ---------EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                          +   ++      N   +               L  G S +     
Sbjct: 523 VGGSAARSNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLT 582

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                        +  +              L+  + +          +A    +  L  
Sbjct: 583 SVDKISETYAIEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQA 642

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S    +   +      IS S   +  V+L   L+ LI V++ +  ++
Sbjct: 643 LGGNVFSQTGN--SGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANS 700

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K +  +D++L TLL   +
Sbjct: 701 KAVTTSDQILNTLLNLKQ 718



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 111/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  ++ ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSSTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNVIKEN 434


>gi|149178721|ref|ZP_01857304.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797]
 gi|148842419|gb|EDL56799.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797]
          Length = 563

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/561 (9%), Positives = 124/561 (22%), Gaps = 87/561 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PEN 49
           M L +  N +    +        +  NI NA    +   + + T               +
Sbjct: 1   MGLTSALNTSLGGLSLNETSIDVLGNNIANAGTNGFKASNVLFTTQLSRTLSVGSRPTTS 60

Query: 50  VTVVTQRSENKNMFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                 R          +       ++             +     D  +          
Sbjct: 61  NGGTNPRQVGLGALSASIRKDFTQGSVTNSTSPSDLAIQGDGFFILDGPDGQVYSRNGNF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNF-------------NTSAREVQKIRADADK 154
             + +S   N S   +    +D    +V                  + + VQ   A    
Sbjct: 121 ELNSQSLLTNQSGFKVQGYGVDEDFNLVTTTLTDIEIPLGDLNVAQATQNVQVGGALLPT 180

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTAS----------------KHDAHDFLDQRDVLL 198
            +   + ++    +     N        +                        ++    L
Sbjct: 181 GVLGTLGSILTTANLTDAGNANAAITGTTLLSDVEETIGTPLFTVGETLEFTPNKGGRSL 240

Query: 199 QKISEIIGISTIVRNNNDMVVYTSD-----------------GTTLFETVPRDINFEKMN 241
             ++ ++  +T   +  D +  T                   G T+       I      
Sbjct: 241 DPMTLLVTGTTTAADFADFMDRTLGIQNGSGIPNDATTGAQPGVTITGGGAFQIVGNSGT 300

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPK------------GKIKALLQIRDSVVPIFQNQ 289
              +      I  DG  +S     +                 +   + ++ + V   Q+ 
Sbjct: 301 VNDIAVTIGNITSDGATISLPFTKSQSSNGESAITDFVIFDSLGEPVTMKMTSVLESQSS 360

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---------- 339
            + + R  + S  + D     S           + +                        
Sbjct: 361 NNTVFRYFLESADDNDGDIAVSNGTITFDSNGNVTNYTPNTFGISRVNTAADEMDVTLDL 420

Query: 340 ----VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                     +  +        S         +     +   + +   +      ++  +
Sbjct: 421 SDISGISSASAGSTLKLTLQDGSDPGTLASFVIDETGIINGVFDNGIIRTLGQITLSRFS 480

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               LLE+  +   + E   S    L          I          ++   L  LI   
Sbjct: 481 NPQGLLEFGNS--TFQEGVSSGPPFLVTPGNFGAGTIRAGSIELSNTDVGRSLVDLIVAS 538

Query: 456 QSYNISNKLIMFTDKMLQTLL 476
            +Y  + ++I    +++  LL
Sbjct: 539 TNYRGNARVISSVQQLVDELL 559


>gi|154174192|ref|YP_001407320.1| flagellar hook protein FlgE [Campylobacter curvus 525.92]
 gi|112803531|gb|EAU00875.1| flagellar hook protein FlgE [Campylobacter curvus 525.92]
          Length = 819

 Score = 83.5 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/366 (10%), Positives = 99/366 (27%), Gaps = 5/366 (1%)

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           + N +          +        + +         D +  ++  ++N  ++  E     
Sbjct: 459 TTNAAYKNAYDKAYTDTTGTASQKHAAGLAAINALIDINDGVKFTVNNAGQYQLENPSNG 518

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           +  K    +                 +SE + ++TI++  +      S G  L  +    
Sbjct: 519 EFDKALYMTTTGLTTEATGSSNANAAVSENVRLTTIMKALDGA---LSPGQALRNSGKLM 575

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           ++     +    S  +   +      +   +         +     + +       D + 
Sbjct: 576 MSSHGSTAEIYDSLGSKHTVSIKWAKTGTTNDGGTEWSMIIQVPEPAKINYSGEGPDNVI 635

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              +   +     + +                +  L  G+         +  + S     
Sbjct: 636 TGSLRFNANGSLASFHPATFTFTANNGSQAGQNVSLNFGLGTDFNGLTSFDKDSSTESIS 695

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     +I  + +  +       +A    N  L     N        
Sbjct: 696 QDGYTGGTLRDIKIDETGTIIGAFTNGKSFGLAQVALATFTNNEGLQSEGGNVFSQ--TA 753

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +          ++ S      V+L   L+ LI +++ +  ++K I  +D+ML T
Sbjct: 754 NSGEAVIGAAGTGDKGTVAASKLEASNVDLSRALTDLIVIQRGFQANSKTITTSDEMLNT 813

Query: 475 LLEGVK 480
           LL+  +
Sbjct: 814 LLQLKQ 819



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/459 (8%), Positives = 104/459 (22%), Gaps = 37/459 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++       +              NI N +   Y                   +P+    
Sbjct: 1   MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTYGYKYNRANFADILSQTPRVATAPQGELG 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                      T  S  +      L +             F      + + D        
Sbjct: 61  GQNPMQIGLGTTINSTTRIFSQGTLTSTDKQTDLALQGNGFF-----IVSPDGGTTRYYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV------QKIRADADKEI 156
                         N S  I+     D     + +       V         RA  + +I
Sbjct: 116 RNGDFVRDKAGNFVNNSGHIVQGWTRDEETGTIDSTGPIKNIVIKEGLTTPARATTEVKI 175

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           +  + +     +  T +           ++ +   D  +  L+         T  +N   
Sbjct: 176 KGNLDSGNTIGARSTPIYSLDSVAGGRDYNNNGIKDNGEDHLENDVNNNQFYTNSKNEQV 235

Query: 217 MVVYTSDGTTLFETVPRDINFEKM---NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           +     D   L++ +   +              ++S P  I      +  G         
Sbjct: 236 LTERGVDLGVLYDELGNGLALRNNQGIWVSYANAKSTPFDIGDAPGGTTTGQINSPTGAT 295

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +++  + +    N +  ++ V     ++ +     +E   G  +    ++    +   
Sbjct: 296 LDIELNGTKITSAPNAMKNISDVAAAINAQYNKTGVQAEISNGNKLTLINRNNSGTIAST 355

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            +  +       ++ + LR    ++        +        +               A 
Sbjct: 356 KNIHL---TVNGNDGTGLRSTKIITAYQYTYTSSQTNAVHGYDDTIPRKVTTTEDLREAM 412

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
                  ++Y  + I       +    L   +    +  
Sbjct: 413 QEDARNHVDYNGDGIIKNSTTAAAEVTLVKAANQTTDQA 451


>gi|330818585|ref|YP_004362290.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3]
 gi|327370978|gb|AEA62334.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3]
          Length = 414

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/469 (9%), Positives = 91/469 (19%), Gaps = 60/469 (12%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             +    AS     I  NI NA+   +       T                         
Sbjct: 6   GLSGLQGASNDLDVIGNNIANANTTGFKAATAQFTDM----------------------- 42

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
                          ++   ++                +    + ++N     +      
Sbjct: 43  ------------YANSVSSAVANGIGIGTQLAAVAQVFQQGGFTTTQNPLNMAINGNGFF 90

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                     T                    ++    +              A+      
Sbjct: 91  QVTNNGVTTYTRDGTFN--------------ADKNGNIVNAAGAQLMGYAVNANGVINTG 136

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
            L         ++     S   + N               +      F   +  T T   
Sbjct: 137 ALVPLTAPQGNLAPKATSSITGQFNLSTS---------DTSQSSTAAFNPNDPTTYTLHQ 187

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +    D +  S N      K       ++           +        G         G
Sbjct: 188 SVPAFDSLGNSENVDLYFVKSTTTGSWEVWAGANGAAPQDMGTAKFDSSGKLIGTVGTDG 247

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           N   V   F                           S                 N  ++ 
Sbjct: 248 NPTAVTNTFALAVNNTNGATAQTININLSGSTQFGASKSGVANLNADGYPTGTLNSYSVG 307

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               +   Y ++         V   N    L     N   +++ + S    + +      
Sbjct: 308 ADGTIQGIYSNNQTLTLGQVVVVNFNNPQGLTSIGGNQ--YIQTSASGVPQVGVPGSTNH 365

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +  S +     +L  EL  LI  ++ Y  + + I     + QTL+  
Sbjct: 366 GTLKGSTTEASTTDLTGELVNLITAQRDYQANAQTIKTQQAVDQTLINL 414


>gi|310641552|ref|YP_003946310.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2]
 gi|309246502|gb|ADO56069.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2]
          Length = 272

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/203 (8%), Positives = 54/203 (26%), Gaps = 3/203 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                  + L      +  +      + G+   +  +        L       I     +
Sbjct: 70  GSTVSSIDTLHLPGSAMTTNNPTDLRLNGDGFFLVKMNADQEAPYLTRAGDFHIDGNRHL 129

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   +    G  ++        +++    ++         N     V  +     L
Sbjct: 130 VTSDGFFVADSGGGVPITLADDVTAFSISQDGTIVQTLASGETDNATKIGVTKVINPEGL 189

Query: 401 LEYARNS---IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            +   +              +      +      I         V+L  E + +I  ++ 
Sbjct: 190 EKIGGSLYRATVNSGNEGEITAMEANSADDGTGAIISGQLEMSNVDLTGEFTEMIVAQRG 249

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  ++++I  +D++LQ ++   +
Sbjct: 250 FQANSRIITTSDEVLQEVVNLKR 272



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/189 (8%), Positives = 39/189 (20%), Gaps = 8/189 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N +   +     M        +     S  +  
Sbjct: 1   MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGASASGEE-- 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    S   Q  L  +  ++  +         +    +    D       N  ++ 
Sbjct: 59  ------TAGSNAKQIGLGSTVSSIDTLHLPGSAMTTNNPTDLRLNGDGFFLVKMNADQEA 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
              T   +          ++       +     I L        +S+   +   +     
Sbjct: 113 PYLTRAGDFHIDGNRHLVTSDGFFVADSGGGVPITLADDVTAFSISQDGTIVQTLASGET 172

Query: 183 SKHDAHDFL 191
                    
Sbjct: 173 DNATKIGVT 181


>gi|207108617|ref|ZP_03242779.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1]
          Length = 294

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 2/180 (1%)

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            ++      N   +               L  G S +                  +  + 
Sbjct: 117 NNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLTSVDKISETYAIEQNGYQA 176

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                        L+  + +          +A    +  L     N         S    
Sbjct: 177 GDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQALGGNVFSQTGN--SGQAL 234

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   +      IS S   +  V+L   L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 235 IGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 294


>gi|319649558|ref|ZP_08003714.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2]
 gi|317398720|gb|EFV79402.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2]
          Length = 268

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 58/225 (25%), Gaps = 2/225 (0%)

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
              +S   GS    G I        S +        + +    G   +          V 
Sbjct: 46  SQTISGATGSGENSGGINPKQVGLGSQLSSIDTIDTQGSLQTTGRVLDIGIQGDGYLMVQ 105

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                   +  +  L    +       + +                + ++          
Sbjct: 106 RGNNTYYTRAGNLYLDDDANLVTASGDKIKGADGAAIQLNGGDATVIKSLSISNDGTINF 165

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               +   +      +A  N N  L +   N         S         +     +   
Sbjct: 166 LIDGNDTLQAAGPIGIARFNNNGGLEKIGDNLYKD--TVNSGDAVPLTPGEDGAGILVSG 223

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 V+L EE + +I  ++ +  + ++I  +D++LQ L+   +
Sbjct: 224 TLEMSNVDLSEEFTEMITAQRGFQANTRIITTSDEILQELVNLKR 268



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/207 (7%), Positives = 42/207 (20%), Gaps = 13/207 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------TISPENVTVV 53
           +L       +   N   +   I  NI N +   Y +                +       
Sbjct: 1   MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVNFKDMVSQTISGATGSGENSG 60

Query: 54  TQR----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          ++     +       +        NN+       L  
Sbjct: 61  GINPKQVGLGSQLSSIDTIDTQGSLQTTGRVLDIGIQGDGYLMVQRGNNTYYTRAGNLYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             ++     S D +        +    +               +  I+   +        
Sbjct: 121 DDDANLVTASGDKIKGADGAAIQLNGGDATVIKSLSISNDGTINFLIDGNDTLQAAGPIG 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDV 196
           +   N+    +    +   D ++  D 
Sbjct: 181 IARFNNNGGLEKIGDNLYKDTVNSGDA 207


>gi|305432574|ref|ZP_07401735.1| flagellar hook protein FlgE [Campylobacter coli JV20]
 gi|304444285|gb|EFM36937.1| flagellar hook protein FlgE [Campylobacter coli JV20]
          Length = 847

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/351 (10%), Positives = 93/351 (26%), Gaps = 5/351 (1%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
           +    +   +    Q ++    +     ISN     +             A+  +  +  
Sbjct: 500 DGNGSSGYDANDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAGVAT-TNPKNMS 558

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
                   K   +       +         + G  + E+    ++          S  + 
Sbjct: 559 FNITAYSNKQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSK 618

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
             ++   V  +            +     + +       + +        ++    +   
Sbjct: 619 HTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSLASYTP 678

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
             +          +   KL  G S +        S  +                  +   
Sbjct: 679 RTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVD 738

Query: 372 --PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
              +++  + +          +A +  N  L E   N   +     S +  +        
Sbjct: 739 DKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGR 796

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  S      V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 797 GEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 847



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/420 (6%), Positives = 92/420 (21%), Gaps = 38/420 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  +                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ ++G  L     + I     ++   T+      +      +NQ + +  G  
Sbjct: 233 GVDAGSLFNANGQGLNLREGQGIWVSYADAKFTTATDGANGVFNENSQTNQQNVIFWGNK 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
            + + +  ++  +     +  +      +        ++ +  G+           +   
Sbjct: 293 DSAVNLDITLNGVNIQNANIRSLDEAIDYINTFTAPTDTRDGTGVKAVKKADGSGIEFVN 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             ++    N +         +      +  WN +N       +    +S         + 
Sbjct: 353 DNADGTTDNMKNIDLVVKQTNTAGERFRVTWNQQNQNFTAVTVKANGNSAWITGGAPGLT 412


>gi|260767923|ref|ZP_05876857.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972]
 gi|260615953|gb|EEX41138.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972]
          Length = 398

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 66/249 (26%), Gaps = 2/249 (0%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              + N             +P   +    S    +    G    + Q             
Sbjct: 152 FVANFNASADAIDQTVYPFDPADPNSFNSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVN 211

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++      S +       +          +            I  ++  + Q+ ++   
Sbjct: 212 VQVDGAATASATVPVTFNTDGTLSSPTGSFNVAFPAAGANAMSIDVSLTGSTQFGADFGV 271

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             +  +           + G   +   Y +  ++      +A       L +   +   W
Sbjct: 272 STNNPNGYTSGELAGVRVEGNGMVYATYTNGESQLQGQVVLANFANPQGLAKV--SGTAW 329

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +   S S  + +        ++        V+L  EL  L+  +++Y  + K I   DK
Sbjct: 330 TQSFSSGSPTVGVPGTGTLGDLTPGALEGSNVDLTSELVSLMTAQRNYQANAKTISTEDK 389

Query: 471 MLQTLLEGV 479
           + Q L   +
Sbjct: 390 LTQALFNAI 398



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/400 (9%), Positives = 93/400 (23%), Gaps = 22/400 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T  +     +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFSAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D    +            ++Y    +   L  
Sbjct: 59  NFDKNGSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D +  ++       +      +    +    ++N       +            +  
Sbjct: 119 YSVDGSNNLLSGSVGDIKISTSSLSAKATDSLEFVANFNASADAIDQTVYPFDPADPNSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N  ++ V      T   TVP   N +   S   
Sbjct: 179 NSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVNVQVDGAATASATVPVTFNTDGTLSSPT 238

Query: 246 TS-------------------ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
            S                     +  F     VS+N  +    G++  +    + +V   
Sbjct: 239 GSFNVAFPAAGANAMSIDVSLTGSTQFGADFGVSTNNPNGYTSGELAGVRVEGNGMVYAT 298

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
               +   +  +   +  +P      +      +         +    +           
Sbjct: 299 YTNGESQLQGQVVLANFANPQGLAKVSGTAWTQSFSSGSPTVGVPGTGTLGDLTPGALEG 358

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           +   L            N +  A      +    +     
Sbjct: 359 SNVDLTSELVSLMTAQRNYQANAKTISTEDKLTQALFNAI 398


>gi|27378811|ref|NP_770340.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110]
 gi|27351960|dbj|BAC48965.1| flgE [Bradyrhizobium japonicum USDA 110]
          Length = 421

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/481 (11%), Positives = 125/481 (25%), Gaps = 61/481 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    + A +  +  SQ  + I  NI N+D   Y     M                  
Sbjct: 1   MSLTGALSSAISALSAQSQSLSMISDNIANSDTTGYKTTSAMF----------------- 43

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              D ++ A S+A        +      +         S    ++       + S + S 
Sbjct: 44  ---DALVTASSNATSYASGGVTVSGRANITQQGLLAATSNATDVAIQGSGFFAVSNSTSG 100

Query: 121 DILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +  T               +   ++  R DAD  +    S          V + +   
Sbjct: 101 GTISYTRNGAFTINNAGYLENNGNYLEGWRTDADGNVVGNESASNLTAINTQVASTSGSA 160

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T +                       ++  + ++       +   T+++++    + + 
Sbjct: 161 TTKT----------------------TVAANLPSDAATGDTYTSSMTVYDSLGAANSMQV 198

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             + T T+  +  F +    S    +        A+    D  +         +      
Sbjct: 199 TWTKTGTNTWSASFANPTSTSDTTTATGTASGTIAITFNSDGSLASTSPSPATVVVTGWT 258

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +    I  N   V            +                   + +          
Sbjct: 259 DGAADSSITLNLGTVGKTDGLTQYASGETTP----------------SVNVTSIDSDGLS 302

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +          VA       L   +           S + 
Sbjct: 303 YGKLSSVSIGKDGVVDATYSNGQTIAIYKIAVATFADPNGLSARSDGIYS--ATVTSGNA 360

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            L    +     I  S   +   +   + S +I  +Q+Y+ ++++I   +KM  TL+  +
Sbjct: 361 ALQASGENGAGTIYGSELESSTTDTSSQFSSMISAQQAYSAASQVISTVNKMYDTLISAM 420

Query: 480 K 480
           +
Sbjct: 421 R 421


>gi|315179626|gb|ADT86540.1| flagellar hook protein E [Vibrio furnissii NCTC 11218]
          Length = 398

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 66/249 (26%), Gaps = 2/249 (0%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              + N             +P   +    S    +    G    + Q             
Sbjct: 152 FVANFNASADAIDQTVYPFDPADPNSFNSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVN 211

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
            ++      S +       +          +            I  ++  + Q+ ++   
Sbjct: 212 VQVDGAATASATVPVTFNTDGTLSSPTGSFNVAFPAAGANAMSIDVSLTGSTQFGADFGV 271

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             +  +           + G   +   Y +  ++      +A       L +   +   W
Sbjct: 272 STNNPNGYTSGELAGVRVEGNGMVYATYTNGESQLQGQVVLANFANPQGLAKV--SGTAW 329

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +   S S  + +        ++        V+L  EL  L+  +++Y  + K I   DK
Sbjct: 330 TQSFSSGSPTVGVPGTGTLGDLTPGALEGSNVDLTSELVSLMTAQRNYQANAKTISTEDK 389

Query: 471 MLQTLLEGV 479
           + Q L   +
Sbjct: 390 LTQALFNAI 398



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 70/281 (24%), Gaps = 3/281 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T  +     +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFSAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D    +            ++Y    +   L  
Sbjct: 59  NFDKNGSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D    ++       +      +    +    ++N       +            +  
Sbjct: 119 YSVDGNNNLLSGSVGDIKISTSSLSAKATDSLEFVANFNASADAIDQTVYPFDPADPNSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N  ++ V      T   TVP   N +   S   
Sbjct: 179 NSSYTSKAYDSLGNSHTVTQYFTKTADNTWEVNVQVDGAATASATVPVTFNTDGTLSSPT 238

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
            S +      G    S   S     +  A   +  +    +
Sbjct: 239 GSFNVAFPAAGANAMSIDVSLTGSTQFGADFGVSTNNPNGY 279


>gi|283478787|emb|CAY74703.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae DSM
           12163]
          Length = 512

 Score = 83.2 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 90/341 (26%), Gaps = 4/341 (1%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
            ++  +           IS             + +    +S   A   +   D +    +
Sbjct: 171 NKLVGVNVSQQDGGSYSISIGNGISLVQGDRFEQLAAVPSSADPARTTIANVDSVTGAKT 230

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
           EI        +   ++ +  D   +   + +       +  T          D       
Sbjct: 231 EIAESQFTSGSLGGLLAFRHDLEGVRNQIGQLALALGSSFNTQHQAGVDSDGDKGEAFFK 290

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
            G+               SV        D  A     +            +   +   D 
Sbjct: 291 LGNPSAMSNSLNKGNASLSVAYDASKTGDVKASNYKMTLENGSWNVVRLSDNSKVKDVDT 350

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
             D   K                ++   ++   SV      N+ + A          +S 
Sbjct: 351 STDGTLKFDGLTVTVGATGTAQNNDSYIIKPVSSVISGMSVNITDAAKLAASSPTGGESN 410

Query: 383 NKNF----IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
           N+N            IN   TL +   + +  +    S     +     V   ++    +
Sbjct: 411 NENVKSLLGLQTQDLINGKSTLTQAYASLVADVGNKTSSLEATNTTQSAVVKQLTSQQQS 470

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             GVNL EE S L + +Q Y  + +++     + Q+LL  V
Sbjct: 471 VSGVNLDEEYSNLARYQQYYMANAQVLQTASTLFQSLLTAV 511


>gi|325524325|gb|EGD02427.1| flagellar hook-associated protein FlgK [Burkholderia sp. TJI49]
          Length = 599

 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/423 (9%), Positives = 99/423 (23%), Gaps = 3/423 (0%)

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +K+     + + S       + Q               + S +        +  S + +
Sbjct: 176 ADKSYQLAAVTSPSDPSELTVVSQGIAGANPPGQNQYLSDASLSGGTLGGLLAFRSQTLD 235

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            ++  LG      A   V   N    ++          +        +       ++ + 
Sbjct: 236 PAQAQLGAIATSFA-AQVNAQNALGIDLSGNVGGKLFAVGTPTVYANQQNKGDAALSVSF 294

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
              +      +                  +    ++    +       +       D   
Sbjct: 295 TDASQPTTGDYTLSYDGTQYTLTDRASGSVVGTSKSMPASIGGLDFSFSSGAMSAGDQFT 354

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                  +            + +++   +           I    V              
Sbjct: 355 VLPTRGALDGFGLATSNGSAIAAASPVVSSAVSTNAGTATITQGAVSAGYQAPSTTLTYD 414

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             S S     AG +  + G           +                 + P  +      
Sbjct: 415 AASKSLSGFPAGTTVTIAGTPPQQVTITDPSTPVPYDPSVGATLTMSGTAPGAINGVTVS 474

Query: 358 SKKFLWNVKN--LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                 +     +  Y    N   ++   + +    +  N  VTL     + +  +    
Sbjct: 475 LSGAPADGDQFKIGPYAGGTNDGTNALALSKLVSAKSFGNGTVTLTGAYASYVNNIGNAA 534

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S           +   I+ S  +  GVN  EE + L++ +Q Y  + K+I     + QT+
Sbjct: 535 SQLKSSSAAQTALVGQITASQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTV 594

Query: 476 LEG 478
           L  
Sbjct: 595 LGL 597



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/391 (10%), Positives = 118/391 (30%), Gaps = 10/391 (2%)

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT + +        L+   +  G      S  A               +  I+     L+
Sbjct: 2   VTVQRQYSQYLSDQLNTAQTQGGALSTWYSLVAQLNNYVGSPTA--GISTAITNYFTGLQ 59

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + N ++  + +T + NA+ +      + ++   +R   + ++   +S +  + +++  
Sbjct: 60  NVANNAADTSVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINAYTAQIAQ 119

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N  I   ++     +  +DQRD+ +  +S + G+  +  ++    V+ + G  L     
Sbjct: 120 LNQQIAAASSQGQPPNQLMDQRDLAVSNLSGLAGVQVVRNSDGY-SVFLAGGQPLVVADK 178

Query: 233 RDINFEKMNSYTVT-----SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   +    +     S+                +++  G +  LL  R   +   Q
Sbjct: 179 SYQLAAVTSPSDPSELTVVSQGIAGANPPGQNQYLSDASLSGGTLGGLLAFRSQTLDPAQ 238

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QL  +A       + ++ +  +     G  +            Q   +         ++
Sbjct: 239 AQLGAIATSFAAQVNAQNALGIDLSGNVGGKLFAVGTPTVYANQQNKGDAALSVSFTDAS 298

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                D         + + + A    +      S   +      +  +  ++  +     
Sbjct: 299 QPTTGDYTLSYDGTQYTLTDRASGSVVGT--SKSMPASIGGLDFSFSSGAMSAGDQFTVL 356

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
                 +       +  +    + +  S  +
Sbjct: 357 PTRGALDGFGLATSNGSAIAAASPVVSSAVS 387


>gi|157165263|ref|YP_001467845.1| flagellar hook protein FlgE [Campylobacter concisus 13826]
 gi|112801725|gb|EAT99069.1| flagellar hook protein FlgE [Campylobacter concisus 13826]
          Length = 814

 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 2/152 (1%)

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
            L  G+         +  + S              N   +     +I  + +  +     
Sbjct: 665 SLNFGLGTDFNGLTSFDKDSSTESISQDGYTGGTLNDLKIDETGTIIGAFTNGQSFGLAQ 724

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A    N  L     N         S    +          I+ S      V+L   L
Sbjct: 725 VALASFTNNEGLQSEGGNVFSQ--TANSGEAVIGAAGTGDKGTIAASKLEASNVDLSRAL 782

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + LI +++ +  ++K I  +D+ML TLL+  +
Sbjct: 783 TDLIVIQRGFQANSKTITTSDEMLNTLLQLKQ 814



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 51/242 (21%), Gaps = 31/242 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++       +              NI N +   +                   +P+    
Sbjct: 1   MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTYGFKYNRANFADILSQTPRVATAPQGQLG 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                      T  S  +      L +             F  +     + D        
Sbjct: 61  GQNAMQIGLGTTINSTTRIFSQGTLTSTDKQTDLALQGNGFFVV-----SPDGGTTRYYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV------QKIRADADKEI 156
                         N S  I+     D+    + +    +  V         RA  + +I
Sbjct: 116 RNGDFVRDKAGNFVNNSGYIVQGWTRDDETGTIDSTGPISNIVIKEGLTTPARATTEVKI 175

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           +  + +        T +            +    L+  +V  +  +      T  RN   
Sbjct: 176 KGNLDSGNSIGQRSTPIYALDSVAGGRDFNNDGILNANEVHNENDTNNDEFYTNSRNEQI 235

Query: 217 MV 218
           + 
Sbjct: 236 LT 237


>gi|289523332|ref|ZP_06440186.1| flagellar basal-body rod protein FlgG [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503024|gb|EFD24188.1| flagellar basal-body rod protein FlgG [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 262

 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 2/200 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            V      +L   +R++     +      +       F    + D      +  +  +  
Sbjct: 65  GVQVGLGTRLIGTSRIMSPGNLQVTDNPFDIAIEGDGFFQVTLPDGTMAYTRDGTWHVDG 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  ++  +L +      +    +              D          +A       L
Sbjct: 125 DGQIVTSNGYLLEPQIAIPEDTVEITVSPTGEVYARQAGDVEPDEIGQIELARFVNPQGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
               +N   +LE   S    L    +  F  + +       V + EE+  +I  +++Y  
Sbjct: 185 RAMGKNL--FLETPASGFPILGQPGEEGFGTLRQGALEMSNVQVVEEMVSMIVSQRAYEA 242

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           ++K I   D++LQ      +
Sbjct: 243 NSKTIQTADELLQIANNLRR 262



 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 10/172 (5%), Positives = 28/172 (16%), Gaps = 23/172 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++                   I  N+ N +   Y +                        
Sbjct: 1   MIRALWSGATGMIAQQSNLDVISNNLANVNTTGYKKIRAEFEDLIYQIGREPGAPVEPDS 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHY 103
             P  V V         +           +             +                
Sbjct: 61  MIPTGVQVGLGTR----LIGTSRIMSPGNLQVTDNPFDIAIEGDGFFQVTLPDGTMAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                   +      +  +L   +    + V    + +     +   D + +
Sbjct: 117 DGTWHVDGDGQIVTSNGYLLEPQIAIPEDTVEITVSPTGEVYARQAGDVEPD 168


>gi|225849135|ref|YP_002729299.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644492|gb|ACN99542.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 266

 Score = 83.2 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 52/229 (22%), Gaps = 34/229 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L     + +           I  NI N +   + R                        
Sbjct: 1   MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDIRDPGVLSSTQN 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V              L    + +        F  ++          +
Sbjct: 61  RVPAGIQIGLGVKVSDVAKI---FSQGSLIKTDNPLDLAIQGDGFFKIE------MPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIE 157
                    +   E Y  N     L   +  +A E V+    +   +V  +R    ++  
Sbjct: 112 EAFTRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVINISVSPNGKVVVVRNSGGQQTT 171

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
            E+ +++ +         AI        +A     + D       +I  
Sbjct: 172 EEVGDIKLYRFMNQAGLKAIGQNLFKYTEASGEPIEGDPNTDGFGKITQ 220



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 2/164 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +    + + DG +         +     +        S      +       +V      
Sbjct: 100 DGFFKIEMPDGSEAFTRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVINISVSPNGKV 159

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             + N       +      +        L    +N   +     S        +   F  
Sbjct: 160 VVVRNSGGQQTTEEVGDIKLYRFMNQAGLKAIGQNLFKY--TEASGEPIEGDPNTDGFGK 217

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           I++ +     VN+ EE+  LI  +++Y +++K I+  D+ML+T+
Sbjct: 218 ITQGFLEASNVNIVEEMVNLIVAQRAYEVNSKGIITADEMLRTV 261


>gi|308173591|ref|YP_003920296.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606455|emb|CBI42826.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7]
 gi|328553477|gb|AEB23969.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens
           TA208]
 gi|328911732|gb|AEB63328.1| flagellar hook protein [Bacillus amyloliquefaciens LL3]
          Length = 258

 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/256 (8%), Positives = 69/256 (26%), Gaps = 2/256 (0%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP- 284
           +L+  +    NF+        + +N   +            + +             +  
Sbjct: 4   SLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQIGL 63

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                  ++        + ++      +      I  G   +  +      +        
Sbjct: 64  GAATSSIDVVHSTGAPQATQNKSDLAIDGDGYFQINTGSGIVYTRAGNFGKDNKGNLVTT 123

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                    GG ++        ++     +          N     +     +  L +  
Sbjct: 124 DGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDAVHNAGQIGLVTFPNSSGLEKIG 183

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N       +   +  +    +     +   Y     V+L +E + +I  ++ +  ++K+
Sbjct: 184 GNLYRE-SLSSGAASAVTTPGENGTGKLLAGYLEMSNVDLTDEFTEMIVAQRGFQSNSKI 242

Query: 465 IMFTDKMLQTLLEGVK 480
           I  +D++LQ L+   +
Sbjct: 243 ITTSDEILQELVNLKR 258



 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/182 (6%), Positives = 32/182 (17%), Gaps = 7/182 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57
           +L       +   N   +   I  NI N +   + +                  V   + 
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60

Query: 58  ENKNMFDKVL--HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    +     + A    +         +     +  +              +   
Sbjct: 61  IGLGAATSSIDVVHSTGAPQATQNKSDLAIDGDGYFQINTGSGIVYTRAGNFGKDNKGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                  L K             + S      +      +       +       +   +
Sbjct: 121 VTTDGYYLEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDAVHNAGQIGLVTFPNSSGLE 180

Query: 176 AI 177
            I
Sbjct: 181 KI 182


>gi|256376465|ref|YP_003100125.1| hypothetical protein Amir_2339 [Actinosynnema mirum DSM 43827]
 gi|255920768|gb|ACU36279.1| protein of unknown function DUF1078 domain protein [Actinosynnema
           mirum DSM 43827]
          Length = 276

 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 45/126 (35%), Gaps = 2/126 (1%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G    K  +   +++G   ++    +   +      +A       L +   +   +    
Sbjct: 153 GLTVDKGTYTSFSVSGDGTIVGVLANGTPRTVGQIAMANFANPGGLDKAGGSF--YRATV 210

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +          +         V+L +E + LI  ++ +  ++K+I  +D++LQ 
Sbjct: 211 NSGPVQIGGAGDNGTGAVVSGALEMSNVDLSQEFTNLIIAQRGFQANSKVITSSDEILQD 270

Query: 475 LLEGVK 480
           L+   +
Sbjct: 271 LMNLKR 276



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 29/167 (17%), Gaps = 33/167 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +      Q       NI N +   +    T+   +                
Sbjct: 1   MLRSLFSGISGLRAHQQMMDVTGNNISNVNTTGFKSSQTVFEDTLSQTLRAAQAAGANTA 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V      +       +                      +     +     
Sbjct: 61  ATNPAQVGLGVRTAGINTNFNQGTTQS----------TGRNTDMLIQGDGFFVVNSSGQQ 110

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                  L           +  IL   + + A  V +N   +   V 
Sbjct: 111 LYTRAGALSFDAAGQLTTPAGGILQGWMANGAGVVDKNQPVAGLTVD 157


>gi|283953666|ref|ZP_06371197.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283794707|gb|EFC33445.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 864

 Score = 83.2 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 115/375 (30%), Gaps = 10/375 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + ++      + + +  +   +             +D ++ I++ ++    F       
Sbjct: 492 LNTDVRTFRTTEDLRELLQRDARYGVDYDGSGTFATSDINQNIKVVVTADGHFAISNANE 551

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL---FET 230
              +     +   A    + + +     +      T+  N+    ++ +    L    + 
Sbjct: 552 QSTVPANAINGVAAPTTTNPKTMSFNITAYSDRQGTVSTNDAFTSIFKAFDGPLVVGNQI 611

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
              +       S  +    +      + V   + S    G  +  + IR           
Sbjct: 612 KESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTG 671

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           +    +++G+    +  +  S     +  +       N+  +    T   N    S+ S 
Sbjct: 672 EGPNNIIVGTARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSA 731

Query: 351 LRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               G  +  +       +   +    +++  + +          +A +  N  L E   
Sbjct: 732 STLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGG 791

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S +  +          +  S      V+L   L+ LI +++ Y  ++K I
Sbjct: 792 NL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTI 849

Query: 466 MFTDKMLQTLLEGVK 480
             +D+MLQTL++  +
Sbjct: 850 STSDQMLQTLIQLKQ 864



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/449 (7%), Positives = 99/449 (22%), Gaps = 45/449 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GQNPLQIGLGVSVNSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFVDPGMHIPAAQSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          ++    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSIHGWNNRTSRSEDENDTGTTQFYTTSKNSLDVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ + G  L     + I     ++   T++      D  +  +   +       
Sbjct: 233 GVDAASLFNAKGQGLNLRDGQGIWISYADAAYSTNKVGQSAFDPNLQQNQTAAFWGTPAQ 292

Query: 273 KALLQ-------IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           K  L        I+++ +    + +  +      + +         ++  G  I     +
Sbjct: 293 KVNLDITLNGVRIQNADIQSIDDAIAYINTFTAPTDTRDGTGVRAVKSKDGSGINFINTN 352

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            D       +  + V     +   +     + ++ F +N    AG   +IN    S    
Sbjct: 353 SDGTTDNMKNINLVVAGTNTAGELWNAVWNAQNQTFTFNNGQGAGNTPVINKNNSSLWTA 412

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                          ++        +   
Sbjct: 413 DTVTFTPPPPAAANTVQLNGALNAQVITA 441


>gi|213029312|ref|ZP_03343759.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 167

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +  N T  +     +  +    S           V   + +   +  GVNL EE   L +
Sbjct: 82  VGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 141

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            +Q Y  + +++   + +   LL  
Sbjct: 142 YQQYYLANAQVLQTANALFDALLNI 166


>gi|90418365|ref|ZP_01226277.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338037|gb|EAS51688.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 388

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 8/284 (2%)

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
             +  +  +       +  + G  L  +         +        +      G      
Sbjct: 107 SFVQRTETIGGKETTFLVNTAGYRLTGSPVGGGAAAPIELPVGAIVAPKATDAGAFTIQF 166

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
             SA      K+ + + DS+    +  +D                 G            G
Sbjct: 167 PESAAVGDTKKSSMVVYDSIGKAIEVPVDMEKTAANTWTVSYTDSGGPQTTTIVFDPNTG 226

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL------AGYPDLIN 376
                                   + +      S       N          A    L  
Sbjct: 227 RPTAAPANMTYTHVNGDTVDIEFGSLTEYATDFSSKLVTNGNPPGSFTGFAFAENGTLSG 286

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                         +A   +   L   A N         S    L       +  +  S 
Sbjct: 287 VMNTGQLIPLYEMSLARFASPDQLQASAGNVYS--ATASSGVAALGGPGTNGYGSLVSSG 344

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                V+L  EL+ +I+ ++SY+ ++K+     ++L  L+   +
Sbjct: 345 LEQSNVDLASELTSMIESQRSYSANSKVFQTGAEILDVLVNLKR 388



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 68/292 (23%), Gaps = 5/292 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+  VF  + +  N  + + +++  NI N+    Y R  T                 + 
Sbjct: 1   MSINGVFRTSVSGMNAQANRLSTVSENIANSSTNGYKRNSTEFASLVLAQGGGEYNPGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLRDSLESYSKNLS 119
               +   +   +I             +                        E+     +
Sbjct: 61  KTQVRQSISQQGSIAATSSGSDLAIQGDGFFVVQDTAGREFYTRAGSFVQRTETIGGKET 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             ++           V     +A  ++            +         E   V D  K 
Sbjct: 121 TFLVNTAGYRLTGSPVGG--GAAAPIELPVGAIVAPKATDAGAFTIQFPESAAVGDTKKS 178

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL-FETVPRDINFE 238
                      ++    + +  +    +S              D  T      P ++ + 
Sbjct: 179 SMVVYDSIGKAIEVPVDMEKTAANTWTVSYTDSGGPQTTTIVFDPNTGRPTAAPANMTYT 238

Query: 239 KMNSYTVTSESNPIFIDGVVVSSN-QGSAVPKGKIKALLQIRDSVVPIFQNQ 289
            +N  TV  E   +       SS    +  P G         +  +    N 
Sbjct: 239 HVNGDTVDIEFGSLTEYATDFSSKLVTNGNPPGSFTGFAFAENGTLSGVMNT 290


>gi|94263193|ref|ZP_01287010.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456411|gb|EAT06531.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 619

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 51/184 (27%), Gaps = 4/184 (2%)

Query: 298 IGSFSEKDPIAGNSENVPG--LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
           I   + +D      E  P                  +           Y +  S L    
Sbjct: 438 IEEINYRDAAGAEPETNPELARIFGPEGSAFAVTESRDNDLQPLRTTNYATASSTLSQQQ 497

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +      ++     ++  Y +  +       +A       L     +   +     
Sbjct: 498 DGFGEGYLQDISINPDGTMVGRYSNQQSFEQAQVMLADFADYRGLEP--TSHNAYKATAM 555

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +    + +  +  F  +  +      V+L  E S LI  ++ +  ++K I   D++  TL
Sbjct: 556 AGEPTIGVAGEGSFGKVLGNTLEGSNVDLGREFSDLIMTQRIFQANSKSITTADEVFDTL 615

Query: 476 LEGV 479
           +   
Sbjct: 616 MRLK 619



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/446 (8%), Positives = 91/446 (20%), Gaps = 24/446 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------V 52
           MSL  +     +  N+ S   A +  NI N +  +Y            +           
Sbjct: 1   MSLHNMIFNGVSGLNSMSGNMAVMGDNIANVNTTSYKSSQASFQNILTSSQERFGEIGNG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
               +  KN     L   + +       + F      M  +   +        + +  LE
Sbjct: 61  SQVAAITKNFRPGDLETTNQSTDMAISGKGFF-----MVNNPLADEMLYTRDGQFK--LE 113

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +          T   +  +                 +    +  E+S+ R   +    
Sbjct: 114 KSAITPEGYYNLATPAGHLVQGRNLAANGGA------DNLGDILIQEVSDPRATGNVSLA 167

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N   K         H   D               + +   ++    +            
Sbjct: 168 MNLQSKPGREDAQPLHSSWDGAAAEPLAADRYDYRTIMQAFDDQGRQFDLTVYFDQTEHD 227

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               F   +   +         +G      +        +   L   ++   +     + 
Sbjct: 228 NQREFLVTHDPALDRRLRQ-DGEGRYNDGEEPETGAGALLYGKLNFSNTGELMDIEAWEV 286

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A   +    E          +         +  +         T+          + + 
Sbjct: 287 PADGNLEPQEENKLPRDPQSGLHSFAFNLSGQGDNLTSTIDFGATVSTRTVSSGGGAKVD 346

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
             G+ +            Y        +     F      G    +T        +  L 
Sbjct: 347 GSGATAANVSAMTTWDQVYDSQGRQVKEGDQLTFSGVDGNGAAATLTYQVDFSERVEDLL 406

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSN 438
               ++       Q     +      
Sbjct: 407 SRLEETFACAAFIQG--GQLELHALE 430


>gi|257866386|ref|ZP_05646039.1| flagellar hook protein [Enterococcus casseliflavus EC30]
 gi|257873098|ref|ZP_05652751.1| flagellar hook protein [Enterococcus casseliflavus EC10]
 gi|257875999|ref|ZP_05655652.1| flagellar hook protein [Enterococcus casseliflavus EC20]
 gi|257800344|gb|EEV29372.1| flagellar hook protein [Enterococcus casseliflavus EC30]
 gi|257807262|gb|EEV36084.1| flagellar hook protein [Enterococcus casseliflavus EC10]
 gi|257810165|gb|EEV38985.1| flagellar hook protein [Enterococcus casseliflavus EC20]
          Length = 312

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 5/277 (1%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 N   V       LF+ +                  N   I   V + +  +   
Sbjct: 36  VSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLGGINATQIGLGVQTGSIDTINT 95

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-NSENVPGLFIADGIKDLD 327
            G  ++  +  D  +      + +       ++  +D     +S           +    
Sbjct: 96  VGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGAFVRDSNGTLTNSDGMQVLGRS 155

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               Q +      +     +        S+      N + L      I+       K   
Sbjct: 156 VNGGQPVVYDDNFDENTALSGQDAVSPLSIPSTLTVNGETLTYNSMAIDANGLVLAKYGN 215

Query: 388 FDPVAGINTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              V G     T              +++ + S +  +          +         V+
Sbjct: 216 QTFVMGKVGVATFNNPEGLEKVGGNNYIQTSNSGNPIVAGPGNNGAGTLQAGALEMSNVD 275

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L  E + +I   ++Y  +++ I  +D+MLQ LL   +
Sbjct: 276 LSTEFTEMIIASRAYQANSRSITTSDEMLQELLNLKR 312



 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/180 (6%), Positives = 35/180 (19%), Gaps = 16/180 (8%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENV 50
           S+L       +   N   +   +  NI N +   +     +                  +
Sbjct: 14  SMLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGL 73

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDHYNNSPTHYIS 105
             +        +    +   ++    Q   +S +                   +      
Sbjct: 74  GGINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDG 133

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                      N     +    ++  + VV + N         +             +  
Sbjct: 134 AFVRDSNGTLTNSDGMQVLGRSVNGGQPVVYDDNFDENTALSGQDAVSPLSIPSTLTVNG 193


>gi|238927475|ref|ZP_04659235.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531]
 gi|238884757|gb|EEQ48395.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531]
          Length = 680

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/418 (11%), Positives = 119/418 (28%), Gaps = 12/418 (2%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +    A  +  G   L     A  ++ +      +  +   S +  +L++ +      +
Sbjct: 275 INGSATATITRTGATSLTSGTYAFGDVFNISGKITSVVSSPPSDVVLTLDANNTITPGTV 334

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   V +         +T   +++           +  ++          +   I   T+
Sbjct: 335 VTVKVPNPNSFTYAVGDTYTGQLKVTSLTPQTGATVTTADGNSV-----KLAAPIPAITS 389

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +           D  +Q I+         +  + +V+ T  G+++   V +D        
Sbjct: 390 AAATYAHTGSATDGTIQSITRESVYQFGGKTVSSVVLNTKSGSSIDGLVGKDYARNDTFY 449

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            +V +        G   S              L                    V +    
Sbjct: 450 PSVATTITVYDSLGAKHSVPVVFTKASNNKWTLSLGSGGDTFNITEADGTTTTVALTKTD 509

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            K   +G+  +               +        I          S +           
Sbjct: 510 LKFDTSGSYVSGTASLSLTYENGAAPQQVAMNLAAITQYSG----TSTIAADSDGHAAGT 565

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++     +   Y +   +      +A  N    L +   N   + E N S +  + 
Sbjct: 566 LASVDIDSTGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNL--YQESNNSGTRTIS 623

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             S +    ++ S      V+L ++ S +I  ++ +  ++K+I  +D+ML+TL+   +
Sbjct: 624 GASDIG-TELTTSALEMSNVDLADQFSDMIITQRGFQSNSKMITVSDEMLETLINMKR 680



 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/447 (8%), Positives = 91/447 (20%), Gaps = 21/447 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++     A +       +   +  NI N +   +                          
Sbjct: 1   MIRSMFSAVSGLKGHQTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASAPNGTIG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V               +L+ + S     +      +  + +                  
Sbjct: 61  GVNPKQIGLGMSVASTDLLYTNGSVQQTGKNTDIAISRGDGLFVVSKGQQKFYTRNGAFS 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
              E      S  +  +  + N   +    + +           + +            S
Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVISVAGDNTTNIRIPAGKSMEAQTT-------ATAS 173

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
               +N        +                     +G   +  +N   +   S      
Sbjct: 174 YTKNLNATTPGYEVANVLVRYADGTTQTTNSYAPSEVGKLVLTMDNGRKIYLDSSAPAQT 233

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                           VT+ +       + + S   S+  +    A   I  +      +
Sbjct: 234 VGSAPTGTLYSSTISNVTASTTGHVDAVLAMDSGNPSSPKEINGSATATITRTGATSLTS 293

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                  V   S      ++    +V     A+        +   +              
Sbjct: 294 GTYAFGDVFNISGKITSVVSSPPSDVVLTLDANNTITPGTVVTVKVPNPNSFTYAVGDTY 353

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +      S++ +    V    G    +     +           G  T+ T+    R S+
Sbjct: 354 TGQLKVTSLTPQTGATVTTADGNSVKLAAPIPAITSAAATYAHTGSATDGTIQSITRESV 413

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISES 435
                    S  L+ KS    + +   
Sbjct: 414 YQFGGKTVSSVVLNTKSGSSIDGLVGK 440


>gi|78776233|ref|YP_392548.1| flagellar hook protein FlgE [Sulfurimonas denitrificans DSM 1251]
 gi|78496773|gb|ABB43313.1| Flagellar hook FlgE [Sulfurimonas denitrificans DSM 1251]
          Length = 718

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/449 (9%), Positives = 102/449 (22%), Gaps = 17/449 (3%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
            I+          ++N   +   ++A +S  G             + +++   N S    
Sbjct: 275 QITTNGGLAGNTAADNAARYVSAINAQTSVTGIIATYSGGF--INLANSNSDINASHNIR 332

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVV--------QNFNTSAREVQKIRADADKE 155
           I+ + ++        S     +   D    V                  ++         
Sbjct: 333 INAVGNANSGLVVGDSATTAYRYQYDPTGAVTVAGGDKKFTTIADLREALENQARAVGNL 392

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
                 +               +          D+     +     + I G         
Sbjct: 393 DADATPDENNI-EIKINAQGKFELSNPGGSQDGDYDINLSITGMNANSITGGGITENTKF 451

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              +   + T    +  +  +     +    S      +        +   V        
Sbjct: 452 TRNMEALNATLPAGSTGKAFSQSFNAATHSASIDIFDSLGSKHTLRTEFRKVAVDASTGS 511

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                  VP                F   +     +   P                  I 
Sbjct: 512 SWNMKISVPEPATIDSVAPYNEKTGFVRFNSDGSLATFNPPNVSFTANNGSAANQQVAIK 571

Query: 336 ----ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                +      + S  +                  +     LI  + +  +       +
Sbjct: 572 LGTSNSFDGMTSFDSKSATSGISQDGFTGGDLVGIRIDQSGTLIGSFSNGRSFGLAQIGM 631

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           A    N  L     N   +++   S    +   +      +  +      V+L   L+ L
Sbjct: 632 AKFTNNEGLSTEGGNV--YVQTANSGDPIIGTAATAGRGFMQAAALEASNVDLSLALTQL 689

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I +++ Y  + K I  +D++LQTL+   +
Sbjct: 690 IIIQRGYQANGKTITTSDQLLQTLIGLKQ 718



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/420 (9%), Positives = 86/420 (20%), Gaps = 27/420 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       +   +          NI N +   Y       +                  
Sbjct: 1   MLKSLFAGVSGLQSHQVAMDVESNNIANVNTVGYKYSRANFSDLLAQTRAIATAPQGELG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                      T  S  +      +               F  +     + D  N     
Sbjct: 61  GKNPVQVGLGATVSSMTRIFSQGSVQNSDKNTDVAIQGDGFFII-----SPDGGNTYKYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                +        + +  I+   + D A   V                        +  
Sbjct: 116 RAGDFKFDAGGNFVDNNGFIVQGWLRDRATGFVDATAPITNINIPPGLTTPASPTQHVVI 175

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                S   V   +  ++  S        +   +         G   ++ N++       
Sbjct: 176 KANLNSGPLVKTYSPAYEVKSYPTGTPLPNPEAIDENGNPIDSGNMGVLFNDSGEAFNLQ 235

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            G  ++ +                 E +  + +D   +     +    G   A    R  
Sbjct: 236 TGQGIWASFTPTKTAATAGVAAGAVELDITLELDDGTLKQITTNGGLAGNTAADNAARYV 295

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                Q  +  +     G F        +          + + + ++ L  G S T    
Sbjct: 296 SAINAQTSVTGIIATYSGGFINLANSNSDIN-ASHNIRINAVGNANSGLVVGDSATTAYR 354

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            QY    +    GG      + +++             D+       +    IN      
Sbjct: 355 YQYDPTGAVTVAGGDKKFTTIADLREALENQARAVGNLDADATPDENNIEIKINAQGKFE 414


>gi|331667483|ref|ZP_08368347.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271]
 gi|331065068|gb|EGI36963.1| flagellar hook-associated protein 1 (HAP1) [Escherichia coli TA271]
          Length = 164

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 33/106 (31%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              +   +      +      +    +  +   + +  +    +           V   +
Sbjct: 58  AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQL 117

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S    +  GVNL EE   L + +Q Y  + +++   + +   L+  
Sbjct: 118 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 163


>gi|322378470|ref|ZP_08052922.1| flagellar hook protein FlgE [Helicobacter suis HS1]
 gi|321149114|gb|EFX43562.1| flagellar hook protein FlgE [Helicobacter suis HS1]
          Length = 718

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 82/299 (27%), Gaps = 6/299 (2%)

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
            +  D    +D L   ++                +   +   L E      +  ++   T
Sbjct: 423 ANKDDGNPTKDNLNIFVTNYASDKVTKNVLFGKTMGALNTAALIEGGVST-STSRLTHAT 481

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIGSF 301
             S  + +   G   S         G      A++     +V    ++ +     ++   
Sbjct: 482 HASSVDLVDSLGTKHSMRLEFYKTGGAEWRFRAIVPEPGEIVGSSPDRPNVFEEGILHFN 541

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
            +      N   +               L  G +                    +  +  
Sbjct: 542 KDGSLAGMNPPVLQFAPHNGSDSPQRITLSFGTAGGFDGITSVDKISETYAIEQNGYQAG 601

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                       L+  + +    +     +A    +  L     +     E + S    +
Sbjct: 602 DLMDVRFDNDGVLLGSFSNGKTLSLAQVALANFANDAGLQADGGSVFS--ETSNSGKALI 659

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +      +S S   +  V+L   L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 660 GAANTGRRGGVSGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/479 (7%), Positives = 95/479 (19%), Gaps = 40/479 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      L               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVI-----SPDRGVTRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160
               +               ++   V D  +   ++  T   ++   +   +  I+  + 
Sbjct: 116 TRSGEFLFDANGSLVTTGGYVVQGWVRDPKDMGSKDSETDMLKIDNTKPLQNIRIDPGMV 175

Query: 161 --SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
             +     ++    +N              D   +      K       +      +   
Sbjct: 176 MPARSSSKITMRANLNAGRHADQVGNVFMLDSSTKTPADGIKPQYDSATNLTQMAEDMGS 235

Query: 219 VYTSDGTTL-----FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           ++  DG                N     +   + +SN + ++G  +S +  SA       
Sbjct: 236 LFNEDGDAFLLNEDQGIWVSYKNASMKKAILSSKDSNTLELNGTKISFSNDSATTHITSL 295

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
           A  +   + V         +    +   ++             +  A      +      
Sbjct: 296 AAAKNAINAVKNKTGVEAYIDDGQLRLENKNSLEGDEHVKNIVVTHAGTGAFANFAKGDQ 355

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKF------LWNVKNLAGYPDLINHYCDSFNKNFI 387
                        +          ++          N+               S +    
Sbjct: 356 SITAFRYRYTKGIDADSTTGQFKTTEDLRALMQHDANIVKNPSLAKSYKDSAASVSVKIN 415

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
              +  I           N   ++    SD    ++        ++ +     GV+   
Sbjct: 416 NHGMFEIANKDDGNPTKDNLNIFVTNYASDKVTKNVLFGKTMGALNTAALIEGGVSTST 474


>gi|315639349|ref|ZP_07894511.1| flagellar hook protein [Campylobacter upsaliensis JV21]
 gi|315480675|gb|EFU71317.1| flagellar hook protein [Campylobacter upsaliensis JV21]
          Length = 839

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/395 (10%), Positives = 102/395 (25%), Gaps = 9/395 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV----IDNAEEVVQNFNTSAREVQKI 148
           +    N+P    +  + ++     N        T     +   +         +   +  
Sbjct: 447 NQGNLNTPGTPENNYQLAMNGSLLNTQARTFRTTEDLRELLQRDARYGVDYDGSGGFEAN 506

Query: 149 RADADKEIELEISN-LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
            +D ++ + + I+      +S               K   HD           + ++   
Sbjct: 507 GSDVNEGVTITITENGNFSISNPNKTTTPPAGINNPKRTNHDLNFNVTAYTDALGKVSTN 566

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
               +         + G+   E+    ++          S  N   ++   V        
Sbjct: 567 DAFTKIFKAFDGVQTVGSQKKESEQLKLSAFSAGLEIFDSLGNKHTLEVQFVKQTTTQDG 626

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                  +     + +    +    +        ++    + N + +          +  
Sbjct: 627 GNEWQMIIRVPEPAEINTTGDGPSNIVVGTARFNNDGSLASYNPKTLNFSPNNGAAPNQQ 686

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL--INHYCDSFNKN 385
            KL  G S          S  +                  +        +  + +     
Sbjct: 687 IKLSFGTSGANDGLVSSSSASTLTNQATDGYTSGNLKPDAIRVDDKGHILGEFTNGKTFA 746

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +A +  N  L E   N         S +  +          +  S      V+L 
Sbjct: 747 VAKIAMASVANNSGLEEIGGNLFKVTGN--SGNIVVGEAGTGGRGEMKTSALEMSNVDLS 804

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             L+ LI V++ Y  ++K I  +D+ML TLL+  +
Sbjct: 805 RSLTQLIVVQRGYQANSKTISTSDQMLNTLLQLKQ 839



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/423 (7%), Positives = 82/423 (19%), Gaps = 38/423 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATVPTENLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                      ++ +    +       +               F  + +     D     
Sbjct: 61  GQNPLQIGLGTSINSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ +    +                  E
Sbjct: 113 YLTRSGDFKLDAAGNFVNNAGFVVQGWNINWDDQSIDTSRSPKNLFIDPGLHIPAAKSTE 172

Query: 160 ISNLRRFLSELTVVND-------AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           ++      S L + N                K       +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGNAARPLYALDSVHGFNKKTGETKDENDTGTTQFYTTSKNSMEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++  +G  L     + I     NS   T + N    D    +          + 
Sbjct: 233 GVDAGSLFNGNGQGLNLREGQGIWVSYANSTFSTDKGNSNVFDPNNKTQQANVIFWGDQN 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           K ++          +N   +     I   +     A   +    +              Q
Sbjct: 293 KPVIMDITLNGVQIRNDNIKSLDEAIAYINTFTNPADGRDGTGVIATKKEDGSGITFTNQ 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T           +     G +    + N        +L +      +K    +   
Sbjct: 353 NSNGTTDNMKNIDLQINTGNQAGELQTVPVTNGNFNWNAMNLNSLAAQGDSKWIAGNFAN 412

Query: 393 GIN 395
             N
Sbjct: 413 NGN 415


>gi|170288994|ref|YP_001739232.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2]
 gi|170176497|gb|ACB09549.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2]
          Length = 261

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 2/133 (1%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + L     ++        N++    +     D   +      +        L     N 
Sbjct: 131 SNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLVRFVNPSGLKSIGDNL 190

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             ++    S      +  Q  F  I + +     V++  E+  +I  +++Y  ++++I  
Sbjct: 191 --YIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMITAQRAYEFNSRVIQT 248

Query: 468 TDKMLQTLLEGVK 480
            D+ML+T     +
Sbjct: 249 ADEMLRTATNVKR 261



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 47/217 (21%), Gaps = 33/217 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    +    +  +I  N+ N D   Y +                        
Sbjct: 1   MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                     +A+        F  ++           
Sbjct: 61  SLPTGLYVGHGVRTAATTRI---FTLGNFEQTGNALDLAIAGDGFFQIQ------LQDGR 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    +   E      +  +L   +      V  N +       +++    +E+  
Sbjct: 112 IAYTRDGSFKIDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGT 171

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                    S L  + D +   T +  D  + +  +D
Sbjct: 172 ITLVRFVNPSGLKSIGDNLYIATPASGDPIEGVPGQD 208


>gi|157415947|ref|YP_001483203.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386911|gb|ABV53226.1| hypothetical protein C8J_1629 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 852

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 95/350 (27%), Gaps = 7/350 (2%)

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
           +       +    Q ++    +     ISN     +            T +  +    + 
Sbjct: 508 DNATPTFDANDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAATTNPKNMSFNIT 567

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
                   +S     + I +  +  +V    G  + E+    ++          S  +  
Sbjct: 568 AYSNKQGTVSTNDAFTKIFKAFDGPLVI---GNQIKESEQLKLSAFSAGLEIYDSLGSKH 624

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            ++   V  +            +     + +         +        ++        +
Sbjct: 625 TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPK 684

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY- 371
            +          +   KL  G S +        S  +                  +    
Sbjct: 685 TINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDD 744

Query: 372 -PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
             +++  + +          +A +  N  L E   N   +     S +  +         
Sbjct: 745 KGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRG 802

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  S      V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 803 EMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 852



 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/428 (7%), Positives = 91/428 (21%), Gaps = 38/428 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ ++GT L     + I     ++   T  +N   +    ++  Q + V     
Sbjct: 233 GVDAGALFNANGTGLNLRDGQGIWVSYADAKFTTDRANGANVFDPNLTVAQQNNVIFWGN 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           K +    D  +   + Q D +  +           A           A    D       
Sbjct: 293 KDIAVTLDINLNGVRIQNDNIRSLDEAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFV 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             +     +     + +      +  +  +    N   +     +   + N        A
Sbjct: 353 NNNADGTTDNMKNIDLTVNVGNSAGERNTINYNANTGVFSPQGGNLTTAQNDTDWIAGAA 412

Query: 393 GINTNVTL 400
                  +
Sbjct: 413 QAGQPQNV 420


>gi|118474252|ref|YP_891218.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118413478|gb|ABK81898.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 546

 Score = 82.8 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/547 (10%), Positives = 146/547 (26%), Gaps = 70/547 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51
           ++  +    +   + +     I  +I N +   Y                  + SP    
Sbjct: 1   MMIGYYNGISGIKSGNFGIDVISNDISNINTVGYKSSTAEFKSILYQSLNQTSTSPVTSQ 60

Query: 52  VV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH------ 102
           +    T  + + N     L           +   F  L  +        N          
Sbjct: 61  IGLGSTSMATSLNFKPGSLQNTDKVFDLAIVGDGFFGLSGINGEQYFTRNGDFSKDVNGD 120

Query: 103 -------YISKLRDSLESYSKNLSEDILGKTVIDN------------------------- 130
                  Y+     +L + + + + +     ++ N                         
Sbjct: 121 IVNRNGLYLLGTMANLNAIALSPNAEQKLGNLMGNNDKQAFTLQTGTSIELSASTAQTKI 180

Query: 131 -----------AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                      A   V         +     + + +     + + +    ++ +N ++  
Sbjct: 181 HLPDVLFLPATATTDVSFSGNLDSTINTQTININLDNTKITTAINKEGKTIS-LNGSLAD 239

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP----RDI 235
               ++      D    +     E I  +     N +  +   D  +L          ++
Sbjct: 240 TPLVQNPNSPNEDVLITIKDANGESITTAAKTDENGNFSLNDFDIRSLNLDGELSIEANV 299

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           N ++    T +  ++ I  +G         +     +        S              
Sbjct: 300 NLKQEVPNTQSFSTDIISPNGNKNILKMEFSKQVPHLDNGTAWNVSATIFSPTNEVISTS 359

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF-LRDG 354
             + +F+EK  +  N+        A+   +L          +     +   + +  L   
Sbjct: 360 NGVLNFNEKGALVSNTLGTLDNDGAELNVNLGTPYDPNTPNSGFDGMRSTGDQNLNLSVN 419

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +   + L     +    +++  + +    +     +     N  L + + N+      +
Sbjct: 420 KNGEAEGLLKEYTMNDNGEVVAIFDNGKMASVAKVALYHFQNNQGLSKSSENTYQTTANS 479

Query: 415 RSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                       VV+   I  S      V+L   L+ LI ++++Y+ S K I  +D+M+Q
Sbjct: 480 GQPIFYQDQNGNVVYGAAIKNSTLEMSNVDLGVSLTDLIIMQKAYDASAKSITTSDQMIQ 539

Query: 474 TLLEGVK 480
             +   K
Sbjct: 540 KAINMKK 546


>gi|330899410|gb|EGH30829.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 268

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 96/268 (35%), Gaps = 5/268 (1%)

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
               T+   R    +  D  L + ++            +  + + +D       +  ++ 
Sbjct: 5   GTGTTLSDVRRIYNSYLDTQLQSSTALSADAVAYSGQASKTDTLLSD--SATGISVQLAD 62

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
               ++  + + ++     + +  A  +   FN+ + ++     + + +++     +   
Sbjct: 63  FFTKMQGIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNEL 122

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            + L  +N  I   +A     +  LD R   +++++E++G+  +  N N  +   +  + 
Sbjct: 123 TTTLASLNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGNFDIYTGTGQSL 182

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +       ++     S  +       +       ++  S +  G I  LL+ R+ V+   
Sbjct: 183 VSGGTSYKMSASPSPSDPLQYNVQIAY---GQTQTDVTSVLTGGSIGGLLRYRNEVLVPA 239

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENV 314
            N+L   A VL    + +     +S+  
Sbjct: 240 TNELGRTAMVLSDQVNSQMNQGIDSKGN 267


>gi|15022422|dbj|BAB62243.1| flagellar protein [Treponema medium]
          Length = 280

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/219 (6%), Positives = 42/219 (19%), Gaps = 14/219 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56
           ++       +   N   +   I  NI N +   + R                 R      
Sbjct: 1   MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVG 60

Query: 57  -------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   S          
Sbjct: 61  GVNPKEVGLGVMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYTRAGAFGV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             +    N +  +  +  +   E        ++ + + +     ++I+   +    +   
Sbjct: 121 DKDGTMVNPANGMRVQGWMAQ-EVDGTRLINTSAQTEDLIIPIGQKIDARATTSVNYACN 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           L      +                   +     E   ++
Sbjct: 180 LDKRLPELPENANRAQVLESTWTTEFKVYDTFGETHELN 218


>gi|182412221|ref|YP_001817287.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1]
 gi|177839435|gb|ACB73687.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1]
          Length = 261

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + +  +        +          I+  D         +  +N Q +          S 
Sbjct: 81  VFTQGQLTSTGEKLDLAIQGDGFFEIQRPDGTFAYTRDGSFKLNAQGQVVTIDGLPVLSG 140

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            +      + +A   +       +         V        L     N   + E   S 
Sbjct: 141 FQAIPAGTEGVAISDNGQVTLTGANGTTTFRLSVTRFANPSGLRSVGGNL--YEETAASG 198

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++    +  +  I + Y  +  VN+ EE+  LI  +++Y I++K I  +D+MLQ + +
Sbjct: 199 TPEIGQPGEQGYGQIMQGYIESSNVNIVEEMVNLIVAQRAYEINSKSIQTSDEMLQNVAQ 258

Query: 478 GVK 480
             +
Sbjct: 259 MKR 261



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 40/209 (19%), Gaps = 28/209 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49
           +      A            +I  N+ N +   + R                  T S   
Sbjct: 1   MNLSLYSAATGMEAQQLNLNTIANNLANVNTPGFKRSKIEFQDLLYQKPTRASGTDSGGG 60

Query: 50  ---------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                           + +K      L +    +        F  ++             
Sbjct: 61  NIVPTGLEVGNGSRVAATSKVFTQGQLTSTGEKLDLAIQGDGFFEIQ------RPDGTFA 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  + + +     +    +                +   +V    A+      L +
Sbjct: 115 YTRDGSFKLNAQGQVVTIDGLPVLSGFQAIPAGTEGVAISDNGQVTLTGANGTTTFRLSV 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           +         +V  +  +   AS      
Sbjct: 175 TRFANPSGLRSVGGNLYEETAASGTPEIG 203


>gi|288960286|ref|YP_003450626.1| flagellar hook protein [Azospirillum sp. B510]
 gi|288912594|dbj|BAI74082.1| flagellar hook protein [Azospirillum sp. B510]
          Length = 871

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/440 (10%), Positives = 121/440 (27%), Gaps = 4/440 (0%)

Query: 43  TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
              +    +     S   N  +  + + ++       + +  +L  + S      +    
Sbjct: 434 LGSTVTASSAGNILSIQANAVNTNVTSSATVTNSSTAVNTMSSLPSVSSVAGVRQSRTVT 493

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                 D    Y+ +++   +  +       +       A ++    A            
Sbjct: 494 LTGTPGDIGTQYTLSINGTAVTYSTTGEEMTMEDITAALANKINSNTALPVTATAQGGVI 553

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                +  +         T +       +D  DV     S  +  S  + + N     T 
Sbjct: 554 TVTAKTAASPTGTNTMTGTGTITFNGSSIDVGDVYTITDSGGVPHSLTITDANAGTYNTP 613

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK--GKIKALLQIRD 280
                +            N+ T    +  +    V   +   SA+         L   + 
Sbjct: 614 AKVMQYFATVVPGATASGNTLTAAGATGTVVDAPVAQFTLDQSAIAGQTPAHIGLTFGKS 673

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                    +         + S  +  AG+   V                     +   +
Sbjct: 674 PETVGTLTNISTALVGTGSAVSAANQSAGSDATVTFTVDYGFGPQQITLNLGKYQKPGGL 733

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                S  +  R   + + +  +          ++ +Y +  +K     P+   N    L
Sbjct: 734 TQFAGSEINVSRLIQNGAPRGQFKDVVFGDGGAVMVNYDNGRSKMIARVPIITFNNPNAL 793

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
              +     +LE   +   + +         +  +   +  V++ +E + +I  ++SY+ 
Sbjct: 794 QRESGGV--FLESEDAGKPNFNDPETNGAGAVVANSVESSNVDIADEFTKMIVTQRSYSA 851

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           + K++  +D+MLQ +L   +
Sbjct: 852 NAKIVTTSDEMLQEVLGLKR 871



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/467 (12%), Positives = 119/467 (25%), Gaps = 28/467 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+      A    N  S+    I  NI N+    Y R D+         +        V
Sbjct: 1   MSIFGSMTTAVLGLNAQSKALGHISDNIANSSTIGYKRVDSAFETMVLQSSQRLHEPGGV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA------------LKEMMSADDHYNNSPT 101
           T +    N     L    S        Q F +            L +  +   + ++   
Sbjct: 61  TAQPVFMNSIQGSLTQVQSPTNIAIQGQGFFSVSKVNVQNSTSTLVQTQTGAVNSSSVYY 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELE 159
                       Y  N S   L   ++D    V++    +  +V  +     A   I+LE
Sbjct: 121 TRAGDFELDKSRYLVNSSGYALNGWLVDPVTGVLKKDQVAPVQVSSLIDKPVATSTIDLE 180

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +          V + +I    +  +        R       S    +     +N   V 
Sbjct: 181 ANLPATPTPGKKVPDSSIPIFDSQGNPRTVNFKWRQQAD---SSWRMVLETPGSNTKPVD 237

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV--SSNQGSAVPKGKIKALLQ 277
            T  G     +  ++I  +   +            +G       +  S    G   +L  
Sbjct: 238 GTFSGNPATVSFGQNIAGQTAVAQVNVVTIAGSNTNGQDNLRIGDTYSVKVDGTNYSLKV 297

Query: 278 IRD--SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
             D    +  +      +A  +  +      +A +S     +   +              
Sbjct: 298 TADNIGSIRTYSGLAGALANQINSASPAASVLATSSGQTIRVTARNPGTPFKLNTDVVSG 357

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                    +++ +     G + K      +   G    IN      +            
Sbjct: 358 TNTTNTIVAQTSTAATASAGEIDKFQFPQTQVEVGDSFTINVNGTPISYTVTAATYQSYP 417

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           T   ++      I     +   +        +  N ++ + +++  V
Sbjct: 418 TVSDVVSQLAGKINQALGSTVTASSAGNILSIQANAVNTNVTSSATV 464


>gi|147678415|ref|YP_001212630.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI]
 gi|146274512|dbj|BAF60261.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI]
          Length = 269

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 67/251 (26%), Gaps = 10/251 (3%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               I F+   +         I        +  G    +  +   +    +       Q 
Sbjct: 28  NVNTIGFKGSRANFQDVLYQTIRFGSAGSDNTGGVNKSQVGLGVTVASITNNTGPGGMQS 87

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
                 L  + +    +  ++      +  +G   +DN     ++           N   
Sbjct: 88  TGRDLDLAINGNGWFMVKPDASQDEVYYTREGTFYIDN-NGYLVNSNGYYLLDVSGNTIQ 146

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
               G  S     +                   +N     +A       L     N   +
Sbjct: 147 FPSEGVASINISKDGIIS------YTPLGGEMVENAFQIGLAMFPNQDGLERVGSN--TF 198

Query: 411 LEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
            E   S +       +      I+  Y     V+L +E + +I  ++ Y  + + I  TD
Sbjct: 199 KESLTSGAALDEKTPNSGGLGTINSGYLEMSNVDLTDEFTNMISTQRGYQANARTITVTD 258

Query: 470 KMLQTLLEGVK 480
           +M++ LL   +
Sbjct: 259 QMIEELLALKR 269



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/262 (8%), Positives = 60/262 (22%), Gaps = 24/262 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +L       +   +   +   I  NI N +   +                     + +  
Sbjct: 1   MLRSLYAGASGLRSHQTRMDVIGNNIANVNTIGFKGSRANFQDVLYQTIRFGSAGSDNTG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V        VT  S   N     + +    +        +  +K     D   +     
Sbjct: 61  GVNKSQVGLGVTVASITNNTGPGGMQSTGRDLDLAINGNGWFMVK----PDASQDEVYYT 116

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                      Y  N +   L     +  +   +   +       I +      E+  + 
Sbjct: 117 REGTFYIDNNGYLVNSNGYYLLDVSGNTIQFPSEGVASINISKDGIISYTPLGGEMVENA 176

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
            +  L+     +   +  + +  ++       D        +  I++     +++ +   
Sbjct: 177 FQIGLAMFPNQDGLERVGSNTFKESLTSGAALDEKTPNSGGLGTINSGYLEMSNVDLTDE 236

Query: 223 DGTTLFETVPRDINFEKMNSYT 244
               +        N   +    
Sbjct: 237 FTNMISTQRGYQANARTITVTD 258


>gi|27904804|ref|NP_777930.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372207|sp|Q89AH7|FLGG_BUCBP RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|27904202|gb|AAO27035.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 260

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 2/166 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D +    +  S  I  N Q  +N  FL            N+    
Sbjct: 94  DVAINGNGFFQVQLPDGNAAYTRDGSFQINPNGQLVTNNGFLIQPVINFPANGNNMSVSR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A    +  L     N   + E   S +  +        
Sbjct: 154 DGIITVRIPEQTQPIRVGKLYLANFVNDSGLSNIGENL--YQETEASGNPSISSPGSHGT 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             + +SY  T  VN+ EEL  +I+ +++Y I++K+I   D+MLQ L
Sbjct: 212 GLLYQSYVETSNVNIAEELVNMIQAQRAYEINSKVITTADQMLQKL 257



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 33/155 (21%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +        I  N+ N +   + R   +                    
Sbjct: 1   MIPALWIAKTGLDAQQINMNVIANNLANVNTNGFKRSKAIFEDLIYHTVQQPGSKSSEET 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  +T   E+       L   +S          F  ++          N
Sbjct: 61  ISPSGFQLGTGVRPITTEREHSQ---GNLSKTNSLKDVAINGNGFFQVQ------LPDGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +        + +        +  ++   +   A  
Sbjct: 112 AAYTRDGSFQINPNGQLVTNNGFLIQPVINFPANG 146


>gi|309788152|ref|ZP_07682758.1| flagellar hook-associated 1 domain protein [Shigella dysenteriae
           1617]
 gi|308924004|gb|EFP69505.1| flagellar hook-associated 1 domain protein [Shigella dysenteriae
           1617]
          Length = 164

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 32/106 (30%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              +          +      +    +  +   + +  +    +           V   +
Sbjct: 58  AGDSDNRSGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQL 117

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S    +  GVNL EE   L + +Q Y  + +++   + +   L+  
Sbjct: 118 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 163


>gi|86154000|ref|ZP_01072202.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842538|gb|EAQ59751.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 845

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 95/351 (27%), Gaps = 7/351 (1%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
           +        +    Q ++    +     ISN     +            T +  +    +
Sbjct: 500 DGDGSKTYDADDINQAVKVVVTENGNFAISNANETSTIPANAGAGANAATTNPKNMSFNI 559

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
                    +S     + I +  + +    + G  + E+    ++          S  + 
Sbjct: 560 TAYSNKQGTVSTNDAFTKIFKAFDGV---LTVGGQIKESEQLKLSAFSAGLEIYDSLGSK 616

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
             ++   V  +            +     + +         +        ++        
Sbjct: 617 HTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTP 676

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           + +          +   KL  G S +        S  +                  +   
Sbjct: 677 KTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVD 736

Query: 372 --PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
              +++  + +          +A +  N  L E   N   +     S +  +        
Sbjct: 737 DKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGR 794

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  S      V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 795 GEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ 845



 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/427 (7%), Positives = 87/427 (20%), Gaps = 44/427 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  +                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRSPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNNKTQRPEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNS-YTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
             +   ++ ++GT L     + I     ++ +T    +N    D    ++  GS     K
Sbjct: 233 GVDAGSLFNANGTGLNLRDGQGIWVSYADAKFTTDKPANVNVFDPNNHTNQNGSIFWGDK 292

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
             A+           QN         I   +         +               +   
Sbjct: 293 DNAVNLDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDG-----TGVKAVKKADGSG 347

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                              L    + +      +   AG  +       +   +      
Sbjct: 348 IEFVNDNADGTTDNMKNINLTVNQANTAGERHAITWNAGNNNFTARSAKNNANSVWIPTA 407

Query: 392 AGINTNV 398
           A +N N 
Sbjct: 408 ANVNGNA 414


>gi|15644290|ref|NP_229342.1| flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8]
 gi|148270380|ref|YP_001244840.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]
 gi|281412686|ref|YP_003346765.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila
           RKU-10]
 gi|4982109|gb|AAD36609.1|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8]
 gi|147735924|gb|ABQ47264.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]
 gi|281373789|gb|ADA67351.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila
           RKU-10]
          Length = 261

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 2/133 (1%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + L     ++        N++    +     D   +      +        L     N 
Sbjct: 131 SNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLVRFVNPSGLKSIGDNL 190

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             ++    S      +  Q  F  I + +     V++  E+  +I  +++Y  ++++I  
Sbjct: 191 --YIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMITAQRAYEFNSRVIQT 248

Query: 468 TDKMLQTLLEGVK 480
            D+ML+T     +
Sbjct: 249 ADEMLRTATNVKR 261



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 47/217 (21%), Gaps = 33/217 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    +    +  +I  N+ N D   Y +                        
Sbjct: 1   MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                     +A+        F  ++           
Sbjct: 61  SLPTGLYVGHGVRTAATTRI---FTLGNFEQTGNALDLAIAGDGFFQIQ------LQDGR 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    +   E      +  +L   +      V  N +       +++    +E+  
Sbjct: 112 IAYTRDGSFKMDSEGRIVTSNGLLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGT 171

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                    S L  + D +   T +  D  + +  +D
Sbjct: 172 ITLVRFVNPSGLKSIGDNLYIATPASGDPIEGVPGQD 208


>gi|283784085|ref|YP_003363950.1| lateral flagellar hook protein [Citrobacter rodentium ICC168]
 gi|282947539|emb|CBG87091.1| lateral flagellar hook protein [Citrobacter rodentium ICC168]
          Length = 400

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 117/474 (24%), Gaps = 75/474 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA                        +S   +    
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTV-------------------GYKSMTTDFSAM 42

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              + +  +      QS              +      ++           +       +
Sbjct: 43  YADSQAMGVSVAGTAQSIAR------GGSMVSTGNALDLAINNGGFFVMCDSAGNITYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 ++     N S   +Q    D    ++       +  +              +  
Sbjct: 97  AGSFETDKNGYIVNASGACLQGYPVDGSGTLQTGTVTDLQIQTGNIPAQATSNMTFTANF 156

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           DA D    R  +   +S     +                TT+++++  + +  +  + T 
Sbjct: 157 DASDETVDRSTMPFDLSNSDSYTDSYT------------TTVYDSLGNEHSVCQYFTKTD 204

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +     +                G++++ ++           +L      +   F    
Sbjct: 205 DNSWEVQYS-------------FDGQMESGVEPVTLTFDPNTGKLTSPTSPVSVEFETGA 251

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +                                QY S+ S   +  +       N 
Sbjct: 252 AAPIDMT-----------------------FDYSSCTQYGSDFSVTTNSANGYASATQNG 288

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +     +   Y +          +A       L     +   W++   S S  + +  
Sbjct: 289 VQVDDDGKVYATYSNGERMLQGQIVLATFPNENGLEAV--SGTAWVQTGESGSALIGVPG 346

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +S     +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 347 SGSCGTLSSGMLESSNVDITTELVELMTAQRNYQANTKVISTSTQLDDALFQAM 400


>gi|313673416|ref|YP_004051527.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940172|gb|ADR19364.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 822

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/419 (10%), Positives = 105/419 (25%), Gaps = 27/419 (6%)

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                + +++ A G       F    E      +   +    +     S       +  +
Sbjct: 431 FESNAVTSNTIAQGATSTSNKFLRYAESTDLLTNLMTNSGQSLGLDNTSTIQMDARIGGN 490

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           I     +              ++++         I++E   +     +           +
Sbjct: 491 IPHGDGVSTLSASGSTIADLTKKLEDYLGLEAGSIKIENGKISVTGEKGIKNQIDYITLS 550

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           A     +   ++        +   G     +   D           F       N  K+ 
Sbjct: 551 AIGSGTYATFNEYMKYQTVQNASGGQLITSQTIYDSQGNPHTVNYEFYLYNEANNEWKLK 610

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                + ++ I IDG           P G  + +    +  +         ++  L  S 
Sbjct: 611 LSPADTVNDSISIDGTTGDEVVVRFNPNGSFQGVYDANNGNIIP------NLSYTLSPSN 664

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                                +                         +  +   +  ++ 
Sbjct: 665 GADKISGVKVFIGKPGEFNGMVLS-------------------AGPSTITKSDQNGFQRG 705

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  ++    +++  Y +   K      VA       L     +     E   S    +
Sbjct: 706 DLDKISINDVGEIVGSYSNGEIKILGQIAVAIFTNQEGLARVGSSLFS--ETPNSGLAAI 763

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +        I         V++ +E   +I V++ Y  ++++I  +D+MLQ LL   +
Sbjct: 764 GVAGAGGRGVIQSGAVENSNVDIAQEFVTMITVQRGYQTNSRVITTSDEMLQELLNLKR 822



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/460 (7%), Positives = 113/460 (24%), Gaps = 31/460 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L     A +  +   +    +  N+ N +   Y                          
Sbjct: 1   MLRSLYSAVSGLSQHQKAMDVLGNNVSNVNTVGYKASRLTFKDLMSQTVSIGKAPSGNIG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         S +                     + F      +   +        
Sbjct: 61  GINPLQIGLGTNVASVDNIFLQGTFQTTGVTTDLAIDGKGFF-----IVRGEQQTERYYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                    + Y  N     +   + D    +++ N + +  ++   +     +   E++
Sbjct: 116 RAGNFSFDRQGYLVNPEGFRVQGWMTDLTTGQLLNNADITDIQMGAAQMTLAAKQTSEVT 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                 ++        +    + +         +    K+  + G    ++ +   +   
Sbjct: 176 LAGNLDTKADPTILQYQPLLTTSNSNTPITSIFNANGLKLDLLDGEPVRIKAHATGITNM 235

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           +      +      +   +N     +  +  +       ++      +G  + L +I  +
Sbjct: 236 AGVYNSSDVSLGLDSATTVNVVLNGTTYSLNYGAADGTDTDNTFNTLQGFAEELQRIIRT 295

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
           V       +      +  S ++    + +        + + +           S  I   
Sbjct: 296 VDNSATVTISGGKLSINRSSTDFTVNSFSGNPNFAAVLQNLVGTYSTITPSRNSGEIFYE 355

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               +  S  ++ G ++ +    +          ++  ++ + N             T  
Sbjct: 356 KVITT-GSDFKNLGELANQISTAISGNVSSGFSASYVDNTLDPNVGRLVYTNSPATTT-- 412

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
               N I     +++ S  +   + V  N I++  ++T  
Sbjct: 413 --GSNVITGFSIDKAYSGTIFESNAVTSNTIAQGATSTSN 450


>gi|41351258|emb|CAE47476.1| flagellar hook protein [Helicobacter hepaticus]
          Length = 693

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/441 (10%), Positives = 114/441 (25%), Gaps = 8/441 (1%)

Query: 31  ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90
                        + +     V +  +      + +                 E   +M 
Sbjct: 259 VSTIGINGEKVSFSNNSAITGVSSIVAAQNA-INSLRDKTGVNAYVDAGQLRIENRNQMD 317

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
             +   N   T   + +  +     ++++      T  ++A+     F T+      I+ 
Sbjct: 318 GGEKVKNIRITSGGTGVLQNFVQGEEDITAFRYRYTKSEDADSTTGQFRTTEDLRALIQY 377

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           DA+     E +      +    +N    F+ A   +  D  D++  L   ++     +  
Sbjct: 378 DANMIKNPEKTYYESTATVGVTINRWGMFEIA---NHDDADDEQRNLSLYVTSHFSDNVT 434

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK- 269
                   +   +  +L E        + + +   TS      +        +       
Sbjct: 435 NNVLFKETMKALNTASLIEGGAAVNTGKIVKATHATSVDIVDSLGSKHNVRFEFWKTGDA 494

Query: 270 -GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
               +A++      +     + +          S+      N   +              
Sbjct: 495 VWSFRAIVPEPAQFIGGSITKPNVFEGGRASFNSDGSLSGMNPPVLQFDPKNGSKGPQRL 554

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
           +L  G +ET                  +  +              L+  + +  +     
Sbjct: 555 ELKFGANETFGGLTSVDKISETYSINQNGYQAGDLMDIRFDSNGSLLGAFSNGRSIALAQ 614

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A    N  L     N         S    +   +      +S S      V+L   L
Sbjct: 615 VALANFANNAGLQAEGGNVYSQTGN--SGEPMVGAANTGRRGGVSGSKLEMSNVDLSRSL 672

Query: 449 SFLIKVEQSYNISNKLIMFTD 469
           + LI V++ +  ++K +  +D
Sbjct: 673 TQLIVVQRGFQANSKAVTTSD 693



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/314 (7%), Positives = 61/314 (19%), Gaps = 41/314 (13%)

Query: 17  ASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PENVT-------VVTQ 55
                     NI N +   +                                     V  
Sbjct: 1   HQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSVGLGVGI 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  K                      F  +     + D           +         
Sbjct: 61  DATTKVFSQGNTQNTDVKTDVAIEGDGFFII-----SPDRGTTHNYTRNGEFLFDANGNL 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-----FLSEL 170
                 ++   V    E       +     +       + I+++   +        ++  
Sbjct: 116 VTTGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPVRNIQIDPGMVMPARATKTITLR 175

Query: 171 TVVN-----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-----IVRNNNDMVVY 220
             +N     D ++   A    A    D    +      +  +          + +   + 
Sbjct: 176 ANLNAGRHIDQMQDVAALDSTAQTAADGVVAIYDSRGVLTQVGEDLGVLFNDDGDAFALN 235

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            + G  L        +   + +   T   N   +     S+  G +       A+  +RD
Sbjct: 236 ENQGIWLSYKTAAIRHETVVTNEVSTIGINGEKVSFSNNSAITGVSSIVAAQNAINSLRD 295

Query: 281 SVVPIFQNQLDEMA 294
                      ++ 
Sbjct: 296 KTGVNAYVDAGQLR 309


>gi|89072309|ref|ZP_01158888.1| putative flagellar hook-associated protein [Photobacterium sp.
           SKA34]
 gi|89051841|gb|EAR57293.1| putative flagellar hook-associated protein [Photobacterium sp.
           SKA34]
          Length = 144

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVTQR 56
            + N      N           N+ N +   + R+  M +         +   V V + R
Sbjct: 2   NMINIGLTGLNANKTALDVTAHNVANVNTPGFSRQQAMMSALAGNNILSAGSGVEVASIR 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +     K   A +S             + E +   + +N   +  +  L  +L   + 
Sbjct: 62  RISDQFIVKQTWAATSQQAASNANLDSMTMLESLLGGEGFN--ISAGLDSLYSALNDATL 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTS 141
                   + +I+ A+ + + FNT 
Sbjct: 120 KPESTPNRQQIINEAKALSRRFNTL 144


>gi|261407975|ref|YP_003244216.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10]
 gi|261284438|gb|ACX66409.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10]
          Length = 274

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 67/265 (25%), Gaps = 7/265 (2%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  + +  +I       +          +   +     G+  P G + A      
Sbjct: 12  MRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPSGGVNAKQIGLG 71

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +          + ++  +  +          V      +                  V
Sbjct: 72  VSIGSIDTLHTPGSAMMTNNPRDLRIDGDGFFMVKLSEDQEVPFLTRAGDFHIDVARNLV 131

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                        G  +          +A    +I    D   +      VA I     L
Sbjct: 132 TSD--GMLVLDSAGDPIQLDEEVTSFTIAQNGAIIQKMSDGTTEEGAIIGVAKIPNPEGL 189

Query: 401 LEYARN-----SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            +   N          + + +        ++     I         V+L  E S +I  +
Sbjct: 190 EKIGGNMYRVTLNAVPDGDLAAVMFEGNNAEEGTGAIIAGQLEMSNVDLTGEFSEMIVAQ 249

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  ++++I  +D++LQ ++   +
Sbjct: 250 RGFQANSRIITTSDEVLQEVVNLKR 274



 Score = 59.7 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 6/58 (10%), Positives = 12/58 (20%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          +L       +       +   I  NI N +   +     M                + 
Sbjct: 1  MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDD 58


>gi|315452912|ref|YP_004073182.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179]
 gi|315131964|emb|CBY82592.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179]
          Length = 718

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 2/174 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              N   +               L  G +                    +  +       
Sbjct: 547 AGMNPPVLQFDPKNGSKAPQRITLSMGTAGGFDGITSVDKISETYAIEQNGYQAGDLMDV 606

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
              G   L+  + +          +A    +  L     +         S    +   + 
Sbjct: 607 RFNGEGALLGSFSNGKTLALAQVAMASFANDAGLQAIGGSVFSETGN--SGKALIGAANT 664

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                +S S   +  V+L   L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 665 GRRGAVSGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 718



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/479 (8%), Positives = 99/479 (20%), Gaps = 40/479 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      L               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVI-----SPDRGVTRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160
               +     E         ++   V D  +   +   T   ++   +   +  I+  + 
Sbjct: 116 TRSGEFLFDAEGNLVTTGGYVVQGWVRDPKDMGSKGSETDMLKIDNTKPLQNIRIDPGMV 175

Query: 161 ----------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI--S 208
                                    AI    +S     D +  +      ++++     S
Sbjct: 176 MPARSSSKISMRANLNAGRHAEQTGAIFALDSSSKTPSDGVKPQYDSSTNLTQLAEDVGS 235

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
               + +  ++    G  +            +++   T E N   I     S+    +  
Sbjct: 236 LFNEDGDAFLLNEDQGIWVSYKNSAMTKAINVSNSNSTLELNGTKISFTNDSAVSRISSL 295

Query: 269 KGKIKALLQIRDSVVPI-FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
               +A+  ++D      + +              ++               A   K   
Sbjct: 296 TAAQEAINAVKDKTGVEAYIDNGQLRLENNNNREGDEHVKNIIITGAGTGAFAQFAKGDQ 355

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +        T  V     +      +      +   N+               S +    
Sbjct: 356 DITAFRYRYTEGVKADPTTGQFKTTEDLRALMQRDANIVKNPKLKGNYKDSAASVSVVVN 415

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
            D +  I           +   ++    SD    ++        ++ +     GV+   
Sbjct: 416 KDGMFEITNKDDGNPTREDLSIFVTNYASDKVTSNVLFGKTMGALNTASLIEGGVSTAT 474


>gi|260893868|ref|YP_003239965.1| fagellar hook-basal body protein [Ammonifex degensii KC4]
 gi|260866009|gb|ACX53115.1| fagellar hook-basal body protein [Ammonifex degensii KC4]
          Length = 266

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 44/151 (29%), Gaps = 1/151 (0%)

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              I ++  +            +           V    G   +I+       K      
Sbjct: 116 TFYIDKSGYIVNAQGYRLQSTSNDNIQIADPDKIVSISIGSDGVISVVKSDGTKITYNIG 175

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDS-HDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
           +       +L     N           +             +I   +     V+L +E +
Sbjct: 176 LVTFKNPESLQRVGANLWDVTPNVTDPATPTPGAPGTDGRGYIRSGFLEMSNVDLAQEFT 235

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +I  ++ Y  + ++I  +D++L+ L++  +
Sbjct: 236 NMIITQRGYQANARVITTSDELLRELVDLKR 266



 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 12/142 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENV 50
           +L       +       +   I  NI N +   +                     + +  
Sbjct: 1   MLRSLFSGVSGLRVHQIRMDVIANNIANINTTGFKAARANFQDILSQTLGRSAVNTTQVG 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             V+  + +  M    L     A+        F  +K + S+ +  N+            
Sbjct: 61  LGVSLAAIDNIMTQGALQTTGRALDLAIEGNGFFVVKPVDSSGNSVNHPLYTRDGTFYID 120

Query: 111 LESYSKNLSEDILGKTVIDNAE 132
              Y  N     L  T  DN +
Sbjct: 121 KSGYIVNAQGYRLQSTSNDNIQ 142


>gi|261821153|ref|YP_003259259.1| flagellar hook protein FlgE [Pectobacterium wasabiae WPP163]
 gi|261605166|gb|ACX87652.1| fagellar hook-basal body protein [Pectobacterium wasabiae WPP163]
          Length = 405

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/402 (9%), Positives = 109/402 (27%), Gaps = 13/402 (3%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
           + +S  +  +N+     + + +S     K+ +               V+  +        
Sbjct: 5   QAVSGLNAASNNLDVIGNNIANSATVGFKSGAVTFADMFAGSKVGMGVKVASVLQDFGNG 64

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
               + +++++ IS    +  + T  +           +  + ++ + + L         
Sbjct: 65  TVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVTGTP 124

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSA 266
             +    + + +   DG  L            + S       +     G     +++ + 
Sbjct: 125 PVVQTGADPVPLTVPDGDMLSRATTAATLKANLKSSDAVPTGSWATTPGAEGTYNSKTNL 184

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG----------NSENVPG 316
                           V    N     AR    + +                 ++     
Sbjct: 185 TTYDSQGNKHDFTLYFVKTANNTWQTYARDGSITPAVYQSAGTLNFEANGALSSTGATAH 244

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                 +   +       +  +  + Q  +  S+     +           +     +  
Sbjct: 245 TPFTINLTGTNGAANGTFTIDLTGSVQQNTEYSYKSPIQNGYAPGALTGFAINDDGTIEG 304

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
           +Y +   +      +A       L     N   W E   S    + +        +    
Sbjct: 305 NYSNGQKQPLGQILLASFANPEGLSPEGDN--AWSETASSGQAVVGLAGTGSLGKLIGKS 362

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + +  V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 363 TESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 404



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 76/309 (24%), Gaps = 8/309 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGAVTFADMFAGSKVGMGVKVASVLQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  + + S  +        F  L++   +  +  N       +   + +          
Sbjct: 62  GNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVT 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V+    + V         + +    A  +  L+ S+     S  T       + + 
Sbjct: 122 GTPPVVQTGADPVPLTVPDGDMLSRATTAATLKANLKSSDAVPTGSWATTPGAEGTYNSK 181

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI---STIVRNNNDMVVYTSDGTTLFETVPR--DINF 237
           +    +D    +        +       +     +    VY S GT  FE          
Sbjct: 182 TNLTTYDSQGNKHDFTLYFVKTANNTWQTYARDGSITPAVYQSAGTLNFEANGALSSTGA 241

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                +T+         +G       GS     +      I++   P             
Sbjct: 242 TAHTPFTINLTGTNGAANGTFTIDLTGSVQQNTEYSYKSPIQNGYAPGALTGFAINDDGT 301

Query: 298 IGSFSEKDP 306
           I        
Sbjct: 302 IEGNYSNGQ 310


>gi|302670255|ref|YP_003830215.1| flagellar hook protein FlgE2 [Butyrivibrio proteoclasticus B316]
 gi|302394728|gb|ADL33633.1| flagellar hook protein FlgE2 [Butyrivibrio proteoclasticus B316]
          Length = 572

 Score = 82.4 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/425 (8%), Positives = 98/425 (23%), Gaps = 19/425 (4%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D+       A  +  L  + +   + +                +       + N  ++  
Sbjct: 159 DRTKTMAGQATSEAYLKGNIDRDDKQLVEGRTIQMDVYGNDGNVYTINFKLTDNADDEDN 218

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
             +V        Q      +   KI    ++++ L   +    L+ +T            
Sbjct: 219 TYSV--------QIDKILDKNGNKISNTLNEKLTLTYDHANGRLTGITPYPIYTLDNGVQ 270

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
           + D    +      +         S  +   +                  +   +  +  
Sbjct: 271 ELDDDGNVLSTTYTMDGRMGQAEFSRTLTGKDGNQYTIYYSIDHHVPEEGEEETDTADYD 330

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                          ++          +   LL I           L E+   +     +
Sbjct: 331 FNVVYVRKGEGTRQYINKTMAVIDYDSESGNLLTIDGENAGEINVDLSEIYDGIGDITFD 390

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF--------LRDGG 355
                               +                        S              
Sbjct: 391 ISNTTIPVAAGTSYRFEFNGEADVLGSLNVDFSNTSNYASSNGVHSSSVSAIRGDTYGLN 450

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   N   ++    +   Y +  +       VA  N  + L +   N   +     
Sbjct: 451 KGYPNGDMNGITISDNGSIYAKYSNGQDVKLAQIVVAEFNNAMGLEKAGDNV--YKASLN 508

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        ++    ++S        V+L +E + +I  ++ +  ++++I  +D++LQ L
Sbjct: 509 SGEPIYMDITEDG-GYMSSGVLEASNVDLAKEFTDMITTQRGFQANSRVITTSDELLQVL 567

Query: 476 LEGVK 480
               +
Sbjct: 568 KGLKR 572



 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/449 (8%), Positives = 102/449 (22%), Gaps = 22/449 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54
           ++     A +       +   I  NI N +  +Y  + T                  V  
Sbjct: 1   MMRSLWSAVSGLQTHQLEMDVIGNNIANVNTTSYKSQATGFQDVLYQTIKTGTAGNGVKG 60

Query: 55  QRSENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADDHYNNSPT-----HY 103
             S ++      + + +       +              +         NSP        
Sbjct: 61  STSADQVGLGAKMGSININITKPGSAQTTYNPFDLMITGDSFFVVSESQNSPNQEKYFTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                   E      +   L    I+    +       +   + +   A  E  L+ +  
Sbjct: 121 DGSFTIDAEGSLVTQNN-GLYVNFIEGEGILGNGEPLISDRTKTMAGQATSEAYLKGNID 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI-IGISTIVRNNNDMVVYTS 222
           R     +      +       +         D    + +   + I  I+  N + +  T 
Sbjct: 180 RDDKQLVEGRTIQMDVYGNDGNVYTINFKLTDNADDEDNTYSVQIDKILDKNGNKISNTL 239

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +          +     +  Y + +  N +       +    +    G++      R   
Sbjct: 240 NEKLTLTYDHANGRLTGITPYPIYTLDNGVQELDDDGNVLSTTYTMDGRMGQAEFSRTLT 299

Query: 283 VPIF-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                Q  +       +    E++    + +                     + +    +
Sbjct: 300 GKDGNQYTIYYSIDHHVPEEGEEETDTADYDFNVVYVRKGEGTRQYINKTMAVIDYDSES 359

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               +         +V    +++      +         +   ++ F+     +   +L 
Sbjct: 360 GNLLTIDGENAGEINVDLSEIYDGIGDITFDISNTTIPVAAGTSYRFEFNGEADVLGSLN 419

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
               N+  +   N   S  +       + 
Sbjct: 420 VDFSNTSNYASSNGVHSSSVSAIRGDTYG 448


>gi|94266588|ref|ZP_01290271.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93452783|gb|EAT03318.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 619

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 53/184 (28%), Gaps = 4/184 (2%)

Query: 298 IGSFSEKDPIAGNSENVPG--LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
           I + + +D      E  P                  +G          Y +  + L    
Sbjct: 438 IEAINYRDAAGAEPETNPELARIFGPEGSAFAVTESRGDDLQPLRTTNYATASATLSQQQ 497

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +      ++     ++  Y +  +       +A       L     +   +     
Sbjct: 498 DGFGEGYLQDISVKPDGTMVGRYSNQQSVEQAQVMLADFADYRGLEP--TSHNAYKATAM 555

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +    + +  +  F  +  +      V+L  E S LI  ++ +  ++K I   D++  TL
Sbjct: 556 AGEPTIGVAGEGSFGKVLGNTLEGSNVDLGREFSDLIMTQRIFQANSKSITTADEVFDTL 615

Query: 476 LEGV 479
           +   
Sbjct: 616 MRLK 619



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/409 (10%), Positives = 89/409 (21%), Gaps = 24/409 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------V 52
           MSL  +     +  N+ S   A +  NI N +  +Y            +           
Sbjct: 1   MSLHNMIFNGVSGLNSMSGNMAVMGDNIANVNTTSYKSSQASFQNILTSSQERFGEIGNG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
               +  KN     L   + +       + F      M  +   +        + +  LE
Sbjct: 61  SQVAAITKNFRPGDLETTNQSTDMAISGKGFF-----MVNNPLADEMLYTRDGQFK--LE 113

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             +          T   +  +                 +    +  E+S+ R   +    
Sbjct: 114 KSAITPEGFYNLATPAGHLVQGRNLAANGGA------DNLGDILIQEVSDPRATGNVSLA 167

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +N   K         H   +               + I   ++    +            
Sbjct: 168 MNLQSKPGREDAQPLHTSWNGAAAEPLAADRYDYRTIIQAFDDQGRQFDLTVYFDQTERD 227

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
               F   +   +      +  DG    ++              ++  S      +    
Sbjct: 228 NQREFLVTHDPALDRR---LRQDGEGRYNDGEEPETGAGALLYGKLNFSSTGELMDIKAW 284

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                     ++D              A  +    + L   I     V+ +  S+    +
Sbjct: 285 EIPADGNLDPQEDNKLPRDPQSGLHSFAFNLSGQGDNLTSTIDFGATVSTRTVSSGGGAK 344

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
             GS +     +                       F  V G     TL 
Sbjct: 345 VDGSGATAANVSAMTTWDQVYDPQGRQVREGDQLTFSGVDGNGAAATLT 393


>gi|291562027|emb|CBL40843.1| fagellar hook-basal body proteins [butyrate-producing bacterium
           SS3/4]
          Length = 305

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 69/262 (26%), Gaps = 12/262 (4%)

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                    K +       +       ++ S +   +         L         F   
Sbjct: 45  MYQTSTTSTKGSENAGGVNAAQYGYGSMMGSISTDMSASTPTYVGGLNASVDGEGFFITF 104

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                 V +    + D                      N +     + +    ++  +  
Sbjct: 105 PKSTETVTVADMKKTDFDYTRVGQFNIDGNGYLTDANGNFVYGFRPDAVDKPTKFDGDLV 164

Query: 350 FLRDGGSVSKKFLWNV-----------KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            ++    V+     +              ++G     +   D    +     +A      
Sbjct: 165 AIKVPSDVTGADFDDPLQLTNVKINSLGEISGTVKSTDPDKDGKTVSIGKVAIATFQNPE 224

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L +      G  E + S +    +      + +   Y     V+L +E S +I  ++ +
Sbjct: 225 GLSKKGSFYYGAAESDNSGNASATIPG-GSTSSLMTGYLEASNVDLAKEFSDMITTQRGF 283

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
             ++K+I  +D++L  L+   +
Sbjct: 284 QANSKIITVSDEILSDLINMKR 305



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/294 (9%), Positives = 71/294 (24%), Gaps = 8/294 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L   + A +       +   I  NI N +   +  +      +    +  + +      
Sbjct: 1   MLRAMDSAVSGLRAHQNKLDVIGNNIANVNTFGFKSQSYSFKEAMYQTSTTSTK------ 54

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +A      Q        ++   MSA         +          ++ K+     
Sbjct: 55  --GSENAGGVNAAQYGYGSMMGSISTDMSASTPTYVGGLNASVDGEGFFITFPKSTETVT 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +      + +                 A+ +         + +       +         
Sbjct: 113 VADMKKTDFDYTRVGQFNIDGNGYLTDANGNFVYGFRPDAVDKPTKFDGDLVAIKVPSDV 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  D  D L   +V +  + EI G       + D    +     +      +   +K + 
Sbjct: 173 TGADFDDPLQLTNVKINSLGEISGTVKSTDPDKDGKTVSIGKVAIATFQNPEGLSKKGSF 232

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           Y   +ES+        +     S++  G ++A                      
Sbjct: 233 YYGAAESDNSGNASATIPGGSTSSLMTGYLEASNVDLAKEFSDMITTQRGFQAN 286


>gi|323703191|ref|ZP_08114844.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323531850|gb|EGB21736.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 260

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 2/107 (1%)

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +     +   ++     +        LL+   N         S         +     
Sbjct: 154 GKVQGKTAEGDFQDIDEITLYTFPAPANLLDEGNNLYSP--TTASGEATEGTPGEDGVGL 211

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           I + Y     V+L +E+  +I+ +++Y  + + I   D+M       
Sbjct: 212 IRQGYLERSNVDLAQEMLGMIEAQRAYAANARTIQTADEMWDRANNL 258



 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 40/179 (22%), Gaps = 28/179 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++       +       +  +I  NI N +   Y R                        
Sbjct: 2   IIKTLATGASGMRAFQMKLDTIGNNIANINTTAYKRSRIEFAEMMRQAMGDQGIPAASDP 61

Query: 45  --ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +V+     +      L      +      + +  +          +     
Sbjct: 62  RPAGGSGVKMVSVARLVEQ---GDLLQTGRDLDLAIEGEGYFKVIS-----PEDDREYYT 113

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                  + E    N +   L   +       V        +VQ   A+ D +   EI+
Sbjct: 114 RDGCFYLNNEGVVVNANGYKLEPEINLKDGNYVAIRIDEKGKVQGKTAEGDFQDIDEIT 172


>gi|291334312|gb|ADD93973.1| flagellar hook protein [uncultured marine bacterium
           MedDCM-OCT-S09-C247]
          Length = 376

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 80/355 (22%), Gaps = 13/355 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRS 57
            F  A      A    A+   NI N  +  + +               +         +S
Sbjct: 2   SFYTALTGLKGAQTDIATTSNNIANVGSSGFKKSRAEFGDIFGSTPLQTNTVGAGTATKS 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
             +      +   ++ +      Q F  LK       +   +          +   +  +
Sbjct: 62  IKQQFSQGNISQSTNTLDMAVSGQGFFTLK----GGGNAGQTVFTRNGSFSVNDAGFIVD 117

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            +   L    +DN   V       A ++Q   +  D     +I+      S+  VV   +
Sbjct: 118 SNGQFLLGYPVDNGGAVADKTLEGAVQLQLAASFGDPVATKKINAGVNLPSDAPVVAANV 177

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
            F                       +   +  I   +      T   +T       +I  
Sbjct: 178 AFDANDAKTYSASSSVTIFDNGGNPKSATVFYIKSQDPTDADPTFKYSTKMFVDGVEIKP 237

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALLQIRDSVVPIFQNQLDEMARV 296
           +   +      +  I   G   ++                  +   +         M   
Sbjct: 238 QLTRATDNKGVTQFIDKFGQKTTAPTEINPAYILDGKGAPLYKADDLGEAAKSTPAMITG 297

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           L       D         P  F         N +   +  T      Y S  + +
Sbjct: 298 LGLEAFLGDGKTVEIVTDPMQFKRTMEWQALNNIDPPVPGTFWGKDFYSSMWTIV 352


>gi|238782792|ref|ZP_04626821.1| Flagellar basal body FlaE domain protein [Yersinia bercovieri ATCC
           43970]
 gi|238716215|gb|EEQ08198.1| Flagellar basal body FlaE domain protein [Yersinia bercovieri ATCC
           43970]
          Length = 359

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/427 (11%), Positives = 103/427 (24%), Gaps = 70/427 (16%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            V   S N+N  D VL   +S++        F  L                   + +   
Sbjct: 2   GVQVSSVNQNFSDGVLGMGNSSLDMGIQGNGFFRLTN------DAGRVFYSRNGQFKTDA 55

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           + +  N     L              F  +          A   I++    +    S+  
Sbjct: 56  DGFIVNNQGMNL------------TGFQATGNPPTIQPGAAVGPIQIPNGQMPARASDSG 103

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           ++N  +   T +     +  D  D         +     + N + + +Y           
Sbjct: 104 ILNGNLDSGTEAIDQTVNPFDPADNSSYSSVSQLDAYDSLGNKHTINIYFVKTGDNEWKA 163

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                          +    + I                                     
Sbjct: 164 YSSNTTSPKVDGAGDAVYQELDIQFDTSG------------------------------- 192

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                L+ + ++ +           L                    +    Q  S  S  
Sbjct: 193 ----QLVTTPAKLNIQGAAFNGGEPLNFDL---------------DLAGMTQQASETSMD 233

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           R   +     + N   +    ++I  Y +   +      ++       L     N   WL
Sbjct: 234 RQSTTGYAPGMMNGYTVGDGGEIIASYSNGEQQLLGQVVLSSFTNPGGLSSQGDNC--WL 291

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S      +        +S +      V+L +E+  +I  +++Y  +++ I    ++
Sbjct: 292 ETPESGQPVTGISGTGNLGKLSGNKLEASNVDLSKEMVNMIVYQRNYQSNSQTIKTQSEL 351

Query: 472 LQTLLEG 478
           LQ L   
Sbjct: 352 LQILANL 358


>gi|23099019|ref|NP_692485.1| flagellar basal body rod protein FlgG [Oceanobacillus iheyensis
           HTE831]
 gi|22777247|dbj|BAC13520.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831]
          Length = 285

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 69/253 (27%), Gaps = 1/253 (0%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +NF+ M S T +         G V +S  G     G I  +       V     
Sbjct: 33  GYKKSMVNFQDMMSQTTSGAQGSTANRGGVNASQVGLGSTIGAISNIHTQGFQQVTNNPL 92

Query: 289 QLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                   +       D    G +            +  +  L    +            
Sbjct: 93  DFAIEGDGMFVLVEGVDADGEGGTNIDLDNVNTAYSRAGNFYLDDNGNIVNSQGLYLVGF 152

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   +++        ++     +     +   +      +A  +    L +   N 
Sbjct: 153 VGDPAQESTINIPESAQSFSVQSNGTVNYIDANGDTQVAGQVALASFSNPSGLQKAGNNL 212

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                           +S  + + +         V+L EE + +I  ++S+  + ++I  
Sbjct: 213 YLDSPNAGLAEQLYTPESDDLGSSVVSGALEMSNVDLSEEFTEMITAQRSFQANTRIITT 272

Query: 468 TDKMLQTLLEGVK 480
           +D++LQ L+   +
Sbjct: 273 SDEILQELVNLKR 285



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 39/188 (20%), Gaps = 28/188 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53
           +L       +   N+  +   I  NI N +   Y +            T           
Sbjct: 1   MLRSMYSGISGMKNSQTKLDVIGNNIANVNTVGYKKSMVNFQDMMSQTTSGAQGSTANRG 60

Query: 54  -----------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-- 100
                      T  + +           ++ +           L E + AD     +   
Sbjct: 61  GVNASQVGLGSTIGAISNIHTQGFQQVTNNPLDFAIEGDGMFVLVEGVDADGEGGTNIDL 120

Query: 101 ------THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                                 N     L   V D A+E   N   SA+           
Sbjct: 121 DNVNTAYSRAGNFYLDDNGNIVNSQGLYLVGFVGDPAQESTINIPESAQSFSVQSNGTVN 180

Query: 155 EIELEISN 162
            I+     
Sbjct: 181 YIDANGDT 188


>gi|192361762|ref|YP_001982398.1| flagellar basal body rod protein FlgG [Cellvibrio japonicus
           Ueda107]
 gi|190687927|gb|ACE85605.1| flagellar basal-body rod protein FlgG [Cellvibrio japonicus
           Ueda107]
          Length = 261

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 60/186 (32%), Gaps = 2/186 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +       +    A +       F+   + D      +     +    Q  +   +L
Sbjct: 76  ATQKEFTEGNIQVTEQALDVAIDGRGFLQVLLPDGTIAYTRNGQLQLNGEGQVVNADGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            +   +  + +  +   +           +  +      +        L     N   +L
Sbjct: 136 LEPAIIVPEGVNKITIGSNGTVNAFAPGVADPQQLGDITLTDFINPSGLQAIGGNL--FL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +    +  +     + +    +  V++ EE+  +I  +++Y +++K++   D+M
Sbjct: 194 ETPASGNPVQGIPGENGMGSLKQGMLESSNVDIVEEMVNMITTQRAYEMNSKVVSTADQM 253

Query: 472 LQTLLE 477
           LQ + +
Sbjct: 254 LQYITQ 259



 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 64/245 (26%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++       +Q A+I  N+ N     + R   +                    
Sbjct: 1   MHSALYVSKTGLAAQDRQLATISNNLANVATVGFKRDRAIFEDLLYQNQRQPGAQETQET 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +   K   +  +     A+      + F  +            
Sbjct: 61  QLPSGLQLGTGVRVVATQ---KEFTEGNIQVTEQALDVAIDGRGFLQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEI 156
                  +L+ + E    N    +L   +I  +   ++    N +        AD  +  
Sbjct: 112 IAYTRNGQLQLNGEGQVVNADGYLLEPAIIVPEGVNKITIGSNGTVNAFAPGVADPQQLG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           ++ +++         +  +      AS +       +  +   K   +   +  +     
Sbjct: 172 DITLTDFINPSGLQAIGGNLFLETPASGNPVQGIPGENGMGSLKQGMLESSNVDIVEEMV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMITT 236


>gi|294084418|ref|YP_003551176.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum
            IMCC1322]
 gi|292663991|gb|ADE39092.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum
            IMCC1322]
          Length = 1575

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 2/162 (1%)

Query: 317  LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                   +  +      +      + Q+    S L            +   +     +  
Sbjct: 1414 PKNNVHYEKQEEGFSIALDVDFAASTQFAQPFSVLSVQQDGFTSGRLDGLEIDSSGTIRA 1473

Query: 377  HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
            +Y +  N       VA  N    L +       ++E   S +  +       F +I    
Sbjct: 1474 NYTNGQNNPLGKIVVANFNNQNGLKQIGNA--TYVETAVSGTPQVGEAGAEGFGNILSGS 1531

Query: 437  SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 V++ EEL  LI  +++Y  S K I  T  + QT++  
Sbjct: 1532 LERSNVDITEELVNLITAQRNYQASAKAIETTTGLTQTIINI 1573



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/426 (11%), Positives = 99/426 (23%), Gaps = 21/426 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------ISPENVTVVTQ 55
            F  A    N +S   ++   NI N     + R                 S    +    
Sbjct: 2   SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFATSPLQNSSSSLGSGAIL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +   +      + +  +A+      Q F ALK  +        +       L    + Y 
Sbjct: 62  KGVKQQFTQGNIASSLNALDLAISGQGFFALKPSL----TSAQTVYTRNGSLNVDNDRYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +   L    ++N   V      SA  +Q      D +    I+      +   VV D
Sbjct: 118 VDSAGQYLLTYPVNNDGSVTAKDLQSAVPLQLPVTSGDPQATSNINLGVNVPASSEVVTD 177

Query: 176 AIKFKTASKHDAHDFLDQRD----VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             +F      +  D     +     +   +      +                      V
Sbjct: 178 QAQFADGYTFNPDDASTFTNSTSITIFDDLGNPTIATVYFIKTQSASADDPTNKYDTRLV 237

Query: 232 PRDINFEKMNSYTVTSESNPIFID---GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             D   +     +V    N +FID       +    +   +GK   L ++ D    I  +
Sbjct: 238 INDQIIDPDLVSSVDEAGNQVFIDRFGRQTTTVPDDNYFLEGKGSPLYKLDDLQKLIPSS 297

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                       F E+          P  F A               + + +N      P
Sbjct: 298 PATIKGEQTSFDFGEEGDKLVEIVTDPLEFKATREGGNAGGDVYWGKDFLLINVDDSDQP 357

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             +              +                    + D +              +  
Sbjct: 358 VSIDIRPGTYNATQLAAEVERSVNAAYGDDRKLQIVQNLDDKIKIDLKRTDADGAVSSLD 417

Query: 409 GWLEKN 414
             +E +
Sbjct: 418 TAIEVD 423


>gi|256833233|ref|YP_003161960.1| hypothetical protein Jden_2019 [Jonesia denitrificans DSM 20603]
 gi|256686764|gb|ACV09657.1| protein of unknown function DUF1078 domain protein [Jonesia
           denitrificans DSM 20603]
          Length = 397

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/384 (9%), Positives = 98/384 (25%), Gaps = 20/384 (5%)

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
                 + N +     +T   +    +     +A+        A   + +++S +    +
Sbjct: 22  TGNNIANVNTTGYKASQTQFKDTLSQMVQNAGAAQGGVGGTNPAQVGLGVQVSGITTNFT 81

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +           T    D     D   V+ +   +    +     +++    T +G  + 
Sbjct: 82  QGA------AQTTGRSTDMMISGDGFFVVQKDGQQFYTRAGAFDFDSNGNFVTPEGAYVM 135

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVPIFQ 287
                +   +               +     ++      +P          RD VV    
Sbjct: 136 GWPATNGAIDVNGQIGPLRLPMTALLGSEETTAISFDGNLPSDAATGTNLDRDVVVYDSL 195

Query: 288 NQLDEMARVLI-----------GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
                +                 + +  D       +                   GI+ 
Sbjct: 196 GNARTVTLSFAKVTAPGPGAMQWTVTATDENGSTGTSTLEFDANGQTTAGTAVTVGGITV 255

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            +     Y +  +         +        +     ++  + +   +      +A    
Sbjct: 256 DLATITGYANLTTVQASSRDGQQAGSLQSFQITADGTVLGAFSNGLKQAVGKISLATFAN 315

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L +   N  G      S    +          +         V+L +E + LI  ++
Sbjct: 316 PAGLEKQGGNLYGT--SVNSGDAQVGEPGMGGRGGLVGGALEMSNVDLSQEFTNLIIAQR 373

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
            +  ++++I  +D++LQ L+   +
Sbjct: 374 GFQANSRVITTSDEVLQELVNLKR 397



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/370 (7%), Positives = 65/370 (17%), Gaps = 18/370 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   +          NI N +   Y    T    +   +      ++    
Sbjct: 1   MLRSLFSGISGMRSHQTMLDVTGNNIANVNTTGYKASQTQFKDTLSQMVQNAGAAQGGVG 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                             +    A              +                     
Sbjct: 61  GTNPAQVGLGVQVSGITTNFTQGAAQTTGRSTDMMISGDGFFVVQKDGQQFYTRAGAFDF 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                        +      N    V         ++          E    +    L  
Sbjct: 121 DSNGNFVTPEGAYVMGWPATNGAIDVNGQI---GPLRLPMTALLGSEETTAISFDGNLPS 177

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +           +         +  +   G         D    T   T  F+
Sbjct: 178 DAATGTNLDRDVVVYDSLGNARTVTLSFAKVTAPGPGAMQWTVTATDENGSTGTSTLEFD 237

Query: 230 TVPRDI--NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +        +   TV   +   + +   V ++       G +++     D  V    
Sbjct: 238 ANGQTTAGTAVTVGGITVDLATITGYANLTTVQASSRDGQQAGSLQSFQITADGTVLGAF 297

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +   + A   I   +  +P     +       +    D              V      +
Sbjct: 298 SNGLKQAVGKISLATFANPAGLEKQGGNLYGTSVNSGDAQVGEPGMGGRGGLVGGALEMS 357

Query: 348 PSFLRDGGSV 357
              L    + 
Sbjct: 358 NVDLSQEFTN 367


>gi|313681188|ref|YP_004058926.1| flagellar hook protein flge [Sulfuricurvum kujiense DSM 16994]
 gi|313154048|gb|ADR32726.1| flagellar hook protein FlgE [Sulfuricurvum kujiense DSM 16994]
          Length = 758

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/448 (9%), Positives = 112/448 (25%), Gaps = 7/448 (1%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
           V++      +   V+     S      D    +  SA     +  S      +   +   
Sbjct: 314 VQQAINAQTANTGVSATVVGSNLVLTNDNSRDSDGSATKNIVITGSNAGALALGFTNQSV 373

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
             +  +  +           + +         D+     +          +  + +D   
Sbjct: 374 ITAYKYTYTTNAADATPLINSYAVPTTSVPPADSNFTTTEQLRLLMETHAQYVSGSDPAG 433

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            +  + +        ++ND  +F+ ++  D     +   + +   S+    +        
Sbjct: 434 TVAPAGVNFATGIKIIINDRGQFEVSNLSDGDANQENLKLQVTGYSDPA-ANVTKNERFT 492

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
            ++ + +GT +  +    ++     +    S      +                 +    
Sbjct: 493 ALMQSINGTVVEGSTGIRLSQSMNAATHSASIDVYDSLGSKHTLKMDFRKTSVDVVSGST 552

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS- 335
                 VP                     P    S   P                  I  
Sbjct: 553 WSMKLSVPEPGEINTIAPINEFNGQVRFGPDGALSSYTPTNITYTANNGSSPNQTINIKL 612

Query: 336 ---ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                      + +                     +     L+  + +  +       +A
Sbjct: 613 GTANAFDGVTSFDATSGTSGISQDGFPGGDLVGIRIDQSGTLVGSFSNGRSFGLAQMGMA 672

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
               N  L+    N   +L+   S    +   +      +  S      V+L + L+ LI
Sbjct: 673 KFTNNEGLVSDGGNV--YLQSANSGDPIIGTAATAGRGFMQSSSLEASNVDLSKSLTQLI 730

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++ Y  + K I  +D +L+TLL   +
Sbjct: 731 IIQRGYQANGKTITTSDTLLETLLGIKR 758



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/412 (8%), Positives = 74/412 (17%), Gaps = 15/412 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           +L                      NI N +   Y       +                  
Sbjct: 1   MLRSLFAGVTGLQAHQIAMDVESNNIANVNTIGYKYSRANFSDLLAQTSQIATAPQGDIG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP--THYISKL 107
                Q      +          +I             +          S          
Sbjct: 61  GKNAVQVGLGTTISSVTRIMTQGSIQNTDKNTDVAIQGDGFFIVSSDAGSTYKYSRSGDF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +        + +  ++   V D A   V +    +                ++       
Sbjct: 121 KFDAAGNFVDNNGFVVQGWVRDEATGKVDSTAPISNINIPPGLTTPANATADVVLKANLD 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           S  TV          S +  +            +  + G      N     ++ S  TT 
Sbjct: 181 SGETVETFNATNSMDSYNLEYASNYAVWQAAGFVPAVGGALPAPPNAATQALWYSAYTTR 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                   N   M +    S +        V   +  + +P            +   I  
Sbjct: 241 NANTNSAENMNVMFNEQGQSLTMQPNQGVWVSYKDSVTTIPMVSAAGAFTFTLNGTTISG 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                       +  +       +  V    +   +   ++                 SN
Sbjct: 301 TTSGVTLADDAATVQQAINAQTANTGVSATVVGSNLVLTNDNSRDSDGSATKNIVITGSN 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              L  G +                       +S+       P A  N   T
Sbjct: 361 AGALALGFTNQSVITAYKYTYTTNAADATPLINSYAVPTTSVPPADSNFTTT 412


>gi|315648129|ref|ZP_07901230.1| fagellar hook-basal body protein [Paenibacillus vortex V453]
 gi|315276775|gb|EFU40118.1| fagellar hook-basal body protein [Paenibacillus vortex V453]
          Length = 274

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 72/268 (26%), Gaps = 13/268 (4%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  + +  +I       +          +   +     G+  P G + A      
Sbjct: 12  MRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPSGGVNAKQIGLG 71

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +        +       + +  +P     +      +          L +     + V
Sbjct: 72  VSIGS-----IDTMHTPGSAMTTHNPTDLRIDGDGFFMVKLSEDQEVPFLTRAGDFHVDV 126

Query: 341 NPQYRSNPSFLRDGGSVSK---KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                ++   L    +              +A    +I    D   +      VA I   
Sbjct: 127 ARNLVTSDGMLVLDSAGDPIQLGDDVTAFTIAQNGAIIQKLSDGTTEAGAIIGVAKIPNP 186

Query: 398 VTLLEYARN-----SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
             L +   N          + + +        ++     I         V+L  E S +I
Sbjct: 187 EGLEKIGGNMYRVTLNAVPDGDVAAVMFEGNDAEEGTGAIIAGQLEMSNVDLTSEFSEMI 246

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ +  ++++I  +D++LQ ++   +
Sbjct: 247 VAQRGFQANSRIITTSDEVLQEVVNLKR 274



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 44/214 (20%), Gaps = 29/214 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVT------- 51
           +L       +       +   I  NI N +   +     M     + +   VT       
Sbjct: 1   MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V+  S +            +    +     F  +K      +       
Sbjct: 61  GGVNAKQIGLGVSIGSIDTMHTPGSAMTTHNPTDLRIDGDGFFMVK----LSEDQEVPFL 116

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                    +               V+D+A + +Q  +              +++    +
Sbjct: 117 TRAGDFHVDVARNLVTSDG----MLVLDSAGDPIQLGDDVTAFTIAQNGAIIQKLSDGTT 172

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                +    + N     K              D
Sbjct: 173 EAGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPD 206


>gi|325567523|ref|ZP_08144190.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158956|gb|EGC71102.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 298

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 5/277 (1%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 N   V       LF+ +                  N   I   V + +  +   
Sbjct: 22  VSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLGGINATQIGLGVQTGSIDTINT 81

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-NSENVPGLFIADGIKDLD 327
            G  ++  +  D  +      + +       ++  +D     +S           +    
Sbjct: 82  VGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGAFVRDSNGTLTNSDGMQVLGRS 141

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               Q +      +     +        S+      N + L      I+       K   
Sbjct: 142 VNGGQPVVYDDNFDENTALSGQGAVSPLSIPSTLTVNGETLTYNSMAIDANGLVLAKYGN 201

Query: 388 FDPVAGINTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              V G     T              +++ + S +  +          +         V+
Sbjct: 202 QTFVMGKVGVATFNNPEGLEKVGGNNYIQTSNSGNAIVAGPGNNGAGTLQAGALEMSNVD 261

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L  E + +I   ++Y  +++ I  +D+MLQ LL   +
Sbjct: 262 LSTEFTEMIIASRAYQANSRSITTSDEMLQELLNLKR 298



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/179 (6%), Positives = 34/179 (18%), Gaps = 16/179 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVT 51
           +L       +   N   +   +  NI N +   +     +                  + 
Sbjct: 1   MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDHYNNSPTHYISK 106
            +        +    +   ++    Q   +S +                   +       
Sbjct: 61  GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                     N     +    ++  + VV + N         +             +  
Sbjct: 121 FVRDSNGTLTNSDGMQVLGRSVNGGQPVVYDDNFDENTALSGQGAVSPLSIPSTLTVNG 179


>gi|304438415|ref|ZP_07398355.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368498|gb|EFM22183.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 678

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 96/327 (29%), Gaps = 7/327 (2%)

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
           KE++ +  ++            A +  T++           D  +   S +       + 
Sbjct: 359 KEVKGQPGSILATADGNKAKLAAAETVTSATQTFARVATAADGNVASTSRVSVYEYNNKT 418

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
            + +V+ T  GT++   V +          +V +        G   S        +    
Sbjct: 419 VSGVVLNTKSGTSIDGLVAKSYGTGDTFYPSVATTITVYDSLGAKHSVPVVYTKAENNKW 478

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            +           +        V +         AG   +               +    
Sbjct: 479 TISLGSGGDSYTIKEADGTTTTVALTKTDLNFDTAGGYVSGSASLNLTYTNGAAPQQVSM 538

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
               I          S +      +     +  ++     +   Y +   +      +A 
Sbjct: 539 NLAAITQYSG----TSTISATSDGNAAGTLSSVDIDSTGVITGTYTNGVRQKEAQIAMAQ 594

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            N    L +   N   + E N S +  +   S +    ++ S      V+L ++ S +I 
Sbjct: 595 FNNPSGLTKMGGNL--YQESNNSGTRTISGASDIG-TELTTSALEMSNVDLADQFSDMII 651

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +  ++K+I  +D+ML+TL+   +
Sbjct: 652 TQRGFQSNSKMITVSDEMLETLINMKR 678



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/445 (7%), Positives = 91/445 (20%), Gaps = 21/445 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++     A +       +   +  NI N +   +                          
Sbjct: 1   MIRSMFSAVSGLKGHQTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASSPTGTIG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V               +L+ + S     +      +  + +                  
Sbjct: 61  GVNPKQIGLGMSVASTDLLYTNGSVQQTGKNTDVAISRGDGLFVVSKGQQKFYTRNGAFS 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR---EVQKIRADADKEIELEISNLRR 165
              E      S  +  +  + N   +    + + +      K    A         NL  
Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVLNVAGDNTTKIQIPAGKSMEAATTATASYTKNLNA 180

Query: 166 FLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS-D 223
                 V N  +K+   +    A+    +   +   +S    ++            T  +
Sbjct: 181 STPGYEVANTLVKYADGTSETVANYTPTETGRISLTLSTGETVTLDGTATYPFDTATPVN 240

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
           G TL+ +   +I         +    +P         +   + +    +++         
Sbjct: 241 GKTLYTSKISNITASATGKVDLKLGIDPTNASSPKKIAGATADISLTGLESGTYAYGGTY 300

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
            I                 E       +       +                       +
Sbjct: 301 NISGTIRKVTTVGTNEIELELAADNNFTNPKAVTTVTVPSPTTFTYKVGDTYNGQLKIKE 360

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI--NTNVTLL 401
            +  P  +      +K  L   + +            + + N        +    N T+ 
Sbjct: 361 VKGQPGSILATADGNKAKLAAAETVTSATQTFARVATAADGNVASTSRVSVYEYNNKTVS 420

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQ 426
               N+      +   +        
Sbjct: 421 GVVLNTKSGTSIDGLVAKSYGTGDT 445


>gi|312884834|ref|ZP_07744526.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367486|gb|EFP95046.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 398

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 66/254 (25%), Gaps = 2/254 (0%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           T       + +          +  +P   +    S +       G    + Q      P 
Sbjct: 147 TTSMDFVANFDASAEQVDQTVNPFDPNNTNSFNSSYSTKVYDSLGNEHNVNQYFTKTGPN 206

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                 ++      S +       +                       I   +  + Q+ 
Sbjct: 207 TWQVNVQVDGAATPSATIAMNFNSDGSLQTPTAPYSVAFPAAGAQPMNIQVDLSGSTQFG 266

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +      +  +           +     +   Y +  ++      +A       L++   
Sbjct: 267 AAFGVSTNSHNGYTSGELVGARVEDSGRVYATYTNGQSQLQGQVVLADFANPQGLVKV-- 324

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   W +   S +  + +        +S        V+L  EL  L+  +++Y  + K I
Sbjct: 325 NGTAWTQSFSSGAPIVGVPGTGTLGDLSPGALEGSNVDLTSELVNLMTAQRNYQANAKTI 384

Query: 466 MFTDKMLQTLLEGV 479
              DK+ Q L   V
Sbjct: 385 STNDKLTQALFNAV 398



 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/393 (9%), Positives = 89/393 (22%), Gaps = 7/393 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  +    +I  NI NA    +    T  +     +        +     +
Sbjct: 2   SFNIALSGLDATNTDLNTISHNIANASTTGFKGARTEFSAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D    +            +++  + +   L  
Sbjct: 59  NFDKNGSISGTGRPMDLAINGTGFFVTKDSTGQTQYTRAGVFNRDKDNFLVSNTGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D    ++   +   +      A         ++N      ++    +       +  
Sbjct: 119 YSVDGNNNLLTGASGDIKLSTSSLAAKATTSMDFVANFDASAEQVDQTVNPFDPNNTNSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L  + +     +    N   + V      T        I     +  ++
Sbjct: 179 NSSYSTKVYDSLGNEHNVNQYFTKTGPNTWQVNVQVDGAAT----PSATIAMNFNSDGSL 234

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            + + P  +      +   +                V     N       V         
Sbjct: 235 QTPTAPYSVAFPAAGAQPMNIQVDLSGSTQFGAAFGVSTNSHNGYTSGELVGARVEDSGR 294

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  +     L     + D  N               + S    +   G+ +   L   
Sbjct: 295 VYATYTNGQSQLQGQVVLADFANPQGLVKVNGTAWTQSFSSGAPIVGVPGTGTLGDLSPG 354

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  DL +   +       +   A   +  
Sbjct: 355 ALEGSNVDLTSELVNLMTAQRNYQANAKTISTN 387


>gi|329929265|ref|ZP_08283018.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5]
 gi|328936634|gb|EGG33077.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5]
          Length = 274

 Score = 81.6 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 72/265 (27%), Gaps = 7/265 (2%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  + +  +I       +          +   +     G+  P G + A      
Sbjct: 12  MRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPSGGVNAKQIGLG 71

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +    + L      +  +      I G+   +  L     +  L       +     +
Sbjct: 72  VSIGS-IDTLHTPGSAMTTNNPTDLRIDGDGFFMVKLSEDQEVPFLTRAGDFHVDVARNL 130

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                        G  +          +A    +I    D   +      VA I     L
Sbjct: 131 VTS-DGMLVLDSAGDPIQLDEEVTAFTIAQNGAIIQKMSDGTTEEGAIIGVAKIPNPEGL 189

Query: 401 LEYARN-----SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            +   N          + + +        ++     I         V+L  E S +I  +
Sbjct: 190 EKIGGNMYRVTLNAVPDGDLAAVMFDGNNAEEGTGAIIAGQLEMSNVDLTGEFSEMIVAQ 249

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  ++++I  +D++LQ ++   +
Sbjct: 250 RGFQANSRIITTSDEVLQEVVNLKR 274



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 44/214 (20%), Gaps = 29/214 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVT------- 51
           +L       +       +   I  NI N +   +     M     + +   VT       
Sbjct: 1   MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V+  S +           ++    +     F  +K      +       
Sbjct: 61  GGVNAKQIGLGVSIGSIDTLHTPGSAMTTNNPTDLRIDGDGFFMVK----LSEDQEVPFL 116

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                    +               V+D+A + +Q                 +++    +
Sbjct: 117 TRAGDFHVDVARNLVTSDG----MLVLDSAGDPIQLDEEVTAFTIAQNGAIIQKMSDGTT 172

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                +    + N     K              D
Sbjct: 173 EEGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPD 206


>gi|313650465|gb|EFS14872.1| flagellar hook-associated 1 domain protein [Shigella flexneri 2a
           str. 2457T]
 gi|332758243|gb|EGJ88566.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri 4343-70]
 gi|332759639|gb|EGJ89944.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri 2747-71]
 gi|332761429|gb|EGJ91713.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-671]
 gi|332767691|gb|EGJ97884.1| hypothetical protein SF293071_1345 [Shigella flexneri 2930-71]
 gi|333004893|gb|EGK24413.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri VA-6]
 gi|333005420|gb|EGK24938.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-218]
 gi|333008287|gb|EGK27761.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-272]
 gi|333019401|gb|EGK38684.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-304]
 gi|333019777|gb|EGK39049.1| flagellar hook-associated protein 1 domain protein [Shigella
           flexneri K-227]
          Length = 192

 Score = 81.6 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 33/106 (31%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              +   +      +      +    +  +   + +  +    +           V   +
Sbjct: 86  AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQL 145

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S    +  GVNL EE   L + +Q Y  + +++   + +   L+  
Sbjct: 146 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 191


>gi|192358786|ref|YP_001982400.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107]
 gi|190684951|gb|ACE82629.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107]
          Length = 803

 Score = 81.6 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/405 (11%), Positives = 95/405 (23%), Gaps = 23/405 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            FN A +    A+        NI NA    +            +           + VT 
Sbjct: 2   SFNTALSGIRAANTDLQVTGNNIANASTIGFKSSRAEFGDVYTSTLLGGGANTPGSGVTI 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           ++  +      L    + +             E     +                   Y 
Sbjct: 62  QNIRQQFTQGNLKFTQNELDLSING-------EGFFVVEKNGERLFTRAGTFGLDKNGYI 114

Query: 116 KNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            N +  +L   V D        +       + +  +     D    L  +      +   
Sbjct: 115 VNGTGALLQGFVADANGNISGVLSDLRVDVSSQAPRQTTAVDASFNLNANESVLETTGQR 174

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             ++      A +          +V    ++    I+    N     +Y +D  TL  T 
Sbjct: 175 FSSNGSGVNEAQQGAKTATTSTLNVGAVSLAPSGSITFSPSNTTTFTLYRTDPVTLATTS 234

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                     + T    +     +    S     A        L     +        ++
Sbjct: 235 STIQLNSGSAASTSALANLINSANFDSPSPVNVEAYADATTGELRFRDLATGVASIIAVE 294

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                     +     A  S  V           +        S T+ +     ++ +++
Sbjct: 295 VNPASDANPLTTALNGAATSVGVAHPTAFQ--AGVPEVTNNYGSHTLVIRNPGGTDVTYI 352

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            + GS + K    +  LAG     N        +F  +    +N 
Sbjct: 353 SEYGSSADKTASELNALAGVSATANTTATLIGSSFSNNGSFRLNG 397



 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/421 (9%), Positives = 104/421 (24%), Gaps = 17/421 (4%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-LESYSKNLSEDILGKTVIDNA 131
                           + S       +    I+ L  S L   S  L +    +      
Sbjct: 384 GSSFSNNGSFRLNGVNLTSTGTPDMTALRDEINALSTSTLFGISAQLDDAGNLQITSATG 443

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISN-------LRRFLSELTVVNDAIKFKTASK 184
            ++  +F+      Q   A    +     +        +   L E   +N +        
Sbjct: 444 RDLDFSFDVGGGVAQVQGAQGPAQTVNNATEKVKIGGVVTVTLQEGYSINSSQPTVPVYG 503

Query: 185 HDAHDFLDQRD--VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +  ++  +    +   +          +     VY S G                  
Sbjct: 504 GSLYGSINVPNFFTPVPINAFDPNDQKTYNHATSTTVYDSLGNPHVMRQFFVKQAYDPAD 563

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            + +     +++     +    +            +    V  + +             S
Sbjct: 564 PSTSPNHWVMYVQIDGQNVGDPNPSLPSPQNTQPTMASFNVHFYPDGSLNPFATDTMLIS 623

Query: 303 EKDPIAGNSE-----NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
              P+  + +         +    G+  ++          +  + Q+ S  +      + 
Sbjct: 624 NWTPLGTDGQPVGALGPLNVLQGGGVPVVEPPTSSNFEVDLAGSTQFGSVFAVESLDQNG 683

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    +++    +   + +   +      +A   +   L         W +   S 
Sbjct: 684 YATGRLAGLDISTTGIVFARFTNGEAQILGQVALANFASVDNLKPTGDTM--WTQTFESG 741

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              +         +I+        V+L E+L  LI  +++Y  + K I   +   QT++ 
Sbjct: 742 EAVIGAPGSAQLGNITAGAVEESNVDLSEQLVNLIIAQRNYQANAKTIETANATTQTIIN 801

Query: 478 G 478
            
Sbjct: 802 L 802


>gi|288871078|ref|ZP_06116279.2| flagellar hook protein [Clostridium hathewayi DSM 13479]
 gi|288864882|gb|EFC97180.1| flagellar hook protein [Clostridium hathewayi DSM 13479]
          Length = 653

 Score = 81.6 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/404 (6%), Positives = 81/404 (20%), Gaps = 13/404 (3%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
           E +                + +    +  +          +  +         +A  V  
Sbjct: 252 ENVFQKPLTGAELLGDHFGINEGTFEFVTSTDAADGIFGGLKFSGMSTSPAFDAAGPVDF 311

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                          +   +     V +  +  T +             +         I
Sbjct: 312 KSELRPGTGGKMAWVVTATVDGREFVGEINENTTTAGKMWLKEAGTGQYIEMSHPGYTAI 371

Query: 208 STIVR-------NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
           ++           +   V   +   T F      +     +      +     +     +
Sbjct: 372 TSSFNAGTGNTAQSFHNVTMPAAAGTGFFNKSMSLKDYGTSGINPGDDIEYSAVKIPASA 431

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK----DPIAGNSENVPG 316
            N+                D         L            +     D           
Sbjct: 432 GNKAKWHVTAVSGGKTYSGDISEGDAAGDLVLTEEGGGTLTIDHKGYSDINTAFLNADEA 491

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                     D+      +             +        +         + G   +  
Sbjct: 492 DKTYASFVPKDHAGTITAATQSNDAGLGSGTFTLENGTEGGAISLSGASIAILGNGIIEA 551

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
            + D          +        L E   +   +   + S         +     +  S 
Sbjct: 552 THPDKGKIQIGRIDLVTFENPYGLEESGNSY--FRATSNSGEAKACQAGEDGTGALKTSS 609

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                V++  E S +I  ++ +  ++++I  +D +L+ L+   +
Sbjct: 610 LEMSNVDISTEFSDMIVTQRGFQANSRIITVSDSILEELVNLKR 653



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/461 (6%), Positives = 93/461 (20%), Gaps = 45/461 (9%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMT-----------------------TISPENV 50
                 +   I  NI N +   +                              +      
Sbjct: 1   MKAHQTKLDVIGNNIANVNTYGFKSSRARFQDVFYQTLQSAAGGDNNKGGTNASQVGYGS 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-------ADDHYNNSPTHY 103
            +      + +M    L +    +      + F  + +           +   +++  + 
Sbjct: 61  QLGGI---DLDMSRSALQSTGRPLDVAIAGEGFFQVMDADGNIFYTRAGNLMLDSNSGNL 117

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +     ++   S +          I +     ++   +++ +           E   ++ 
Sbjct: 118 VDSNGYTVLGVSGDPLGKAPSSDKI-HLNIPTKSSGLASKTLTINGTQFTITSEKATTDA 176

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              ++     N  +   +    +  D  D    +    + I    +   +  +  +    
Sbjct: 177 NVSITFKAEDN--LPSGSDIVVNPSDINDSSITVHVNKNAIFTSLSDFNSKMNSAITRGC 234

Query: 224 GTTLFETVPRDINFEKM------NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
           G          I                    +   I+         +    G    L  
Sbjct: 235 GGKAHPGGNFTITATPAENVFQKPLTGAELLGDHFGINEGTFEFVTSTDAADGIFGGLKF 294

Query: 278 IRDSVVPIFQNQLDEMARV---LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
              S  P F        +              +    +    +   +       K+    
Sbjct: 295 SGMSTSPAFDAAGPVDFKSELRPGTGGKMAWVVTATVDGREFVGEINENTTTAGKMWLKE 354

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           + T           + +    +          +    P        + + +      +GI
Sbjct: 355 AGTGQYIEMSHPGYTAITSSFNAGTGNTAQSFHNVTMPAAAGTGFFNKSMSLKDYGTSGI 414

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           N    +   A                     +     ISE 
Sbjct: 415 NPGDDIEYSAVKIPASAGNKAKWHVTAVSGGKTYSGDISEG 455


>gi|297568486|ref|YP_003689830.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924401|gb|ADH85211.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 636

 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 9/266 (3%)

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              VY S+G  + E       F          E    ++              +      
Sbjct: 378 WNQVYDSNGQQVQEGD----TFIFQGLNHQGEEVTSTYVVDYGERVEDLMLQLEADFNVT 433

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG--LFIADGIKDLDNKLCQG 333
             +R+  +   Q      +++ I S +  D    +  + P       +   +   +L Q 
Sbjct: 434 ALLRNGRL-ELQANDPGESQMAITSVTYLDAAGNSPADNPDLAQPFGEQGAEFALELGQD 492

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           +  +      Y ++ S +          +    ++     ++ +Y +  + +     +A 
Sbjct: 493 MELSPLRTTNYATSSSTIFQDQDGYGAGVLQNVSVKPDGTIVGNYSNGQSHDQAQVMLAD 552

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L+  + N   +    +S    +      VF  +  S      V+L  + + L  
Sbjct: 553 FANYHGLIPGSNN--TYQASAQSGDPVIGTPGSGVFGQVLGSSLEGSNVDLARQFADLTM 610

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            ++ +  ++K I   D++ QTL+   
Sbjct: 611 TQRIFQANSKSITTADEIHQTLMRLK 636



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 55/237 (23%), Gaps = 15/237 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------V 52
           MSL  +     +  N+ +   A +  N+ N +  +Y    T       +           
Sbjct: 1   MSLHNMMFNGMSGINSMAGNMAVLGDNVANINTVSYKNSQTTFQNVLTSSQDRFHEVGNG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSL 111
              ++ +KN     L   + A       + F  + +      +  +      +     + 
Sbjct: 61  SQIQAISKNFRPGPLEQTTKATDMAIGGKGFFMVNDYNGETLYTRDGQFDLKVEDYTPAG 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQ------NFNTSAREVQKIRADADKEIELEISNLRR 165
                  +   +    +D      Q        ++  +  + +    + +          
Sbjct: 121 FYNLVTPAGYRVQGLNLDYGNGNGQPGDILVRRDSLPQATENVTLALNLQSSAAPPTDTT 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
            L E             +           D        I    T      + ++   
Sbjct: 181 SLYESWNGAATPPLAAGAYDYQTSIEAYDDQGQSFPLNIFFDHTDNPQEREFLITHD 237


>gi|194014627|ref|ZP_03053244.1| flagellar basal-body rod protein FlgG (Distal rod protein)
           [Bacillus pumilus ATCC 7061]
 gi|194013653|gb|EDW23218.1| flagellar basal-body rod protein FlgG (Distal rod protein)
           [Bacillus pumilus ATCC 7061]
          Length = 263

 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 5/223 (2%)

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           VS    S+         +  +   +    + +D++        +++D             
Sbjct: 45  VSQTISSSGGPTNNSGSINSKQVGLGSSLSSIDKIMSAGASQNTDRDYDFY-INGDGFFR 103

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
           I    + L  +      ++         N   L   G              G    I+  
Sbjct: 104 IEKQGEVLYTRAGNFTRDSEGSLTTSDGN-YVLGMNGQKITIPDGISSVSVGPDGTISVV 162

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL-HMKSQVVFNHISESYS 437
            ++ ++N     +   +    L +   N   + +   S +     +  +     I     
Sbjct: 163 ENNVSRNVGQVSLVSFSNAAGLDKVGENL--YRQTLSSGAPSNPIVPGEQGTGIIQTGRL 220

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               V+L +E + +I  ++ +  + K I  +D++LQ L+   +
Sbjct: 221 EMSNVDLTDEFTEMIIAQRGFQSNAKTITTSDEILQELVNLKR 263


>gi|323341378|ref|ZP_08081622.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC
           25644]
 gi|323091255|gb|EFZ33883.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC
           25644]
          Length = 301

 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 74/280 (26%), Gaps = 12/280 (4%)

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
              +N        G  LF+ +                  N   +   + +    +   +G
Sbjct: 24  NNVSNVNTHGFKAGRVLFQDMVSQNTTSASAPGLGLGGVNGKQVGLGMQTGAVDTMTGRG 83

Query: 271 KIKALLQIRDSVVP---------IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
            +++  Q  D  +                D +         ++D       +        
Sbjct: 84  NMESTGQDMDLYIQGEGYFVVRKEATADSDAVTYYTRDGAFKRDSQGLLVNSNGYHVKGQ 143

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
             K           ++        +  S L D            +++      +      
Sbjct: 144 PTKGNIPAAWDNNFKSENYFGNPNATGSNLADINIPETVNGQRFESVTIDNSGLVVAKYG 203

Query: 382 FNK-NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
             +       +A  N    L +   N+      N S   +           +   +    
Sbjct: 204 DTRYAMGKIELAKFNNPSGLKKSGSNNFSV--TNNSGDPNFATPGLGGTGTLESGFLEMS 261

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+L ++ S +I   ++Y  +++ I  +D+MLQ LL   +
Sbjct: 262 NVDLADQFSQMIIASRAYQANSRSITTSDEMLQELLNLKR 301



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/144 (6%), Positives = 28/144 (19%), Gaps = 19/144 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------PENVT 51
           +L       +       Q   I  N+ N +   +     +                  + 
Sbjct: 1   MLRSLYSGVSGMKGFQTQMDVIANNVSNVNTHGFKAGRVLFQDMVSQNTTSASAPGLGLG 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS--------ADDHYNNSPTHY 103
            V  +     M    +   +     +   Q  +   +             D    +    
Sbjct: 61  GVNGKQVGLGMQTGAVDTMTGRGNMESTGQDMDLYIQGEGYFVVRKEATADSDAVTYYTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTV 127
               +   +    N +   +    
Sbjct: 121 DGAFKRDSQGLLVNSNGYHVKGQP 144


>gi|238764398|ref|ZP_04625348.1| Flagellar hook-associated protein 1 [Yersinia kristensenii ATCC
           33638]
 gi|238697424|gb|EEP90191.1| Flagellar hook-associated protein 1 [Yersinia kristensenii ATCC
           33638]
          Length = 206

 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 5/187 (2%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                +  +         + +  P L        + N      ++         +  + L
Sbjct: 23  WQVTRVSDNTKVPTTAGTDKDGKPTLNFDGIAVSVTNGTQGPEAKDKFTIKTVSNVAANL 82

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   + S           G  D +N       +         ++   T        +  +
Sbjct: 83  QVAITDSSMIAAGGTADGGASDNVNAQALLNLQTQ-----KLVDGKATFSGAYAGLVSNV 137

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               + +         +   +S    +  GVNL EE   L + +Q Y  + ++I     +
Sbjct: 138 GNQTATAKTNSTAQANIVKQLSAEQQSISGVNLDEEYGDLQRFQQYYLANAQVIQTASTL 197

Query: 472 LQTLLEG 478
              LL  
Sbjct: 198 FNALLSL 204


>gi|291280520|ref|YP_003497355.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans
           SSM1]
 gi|290755222|dbj|BAI81599.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans
           SSM1]
          Length = 262

 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 66/212 (31%), Gaps = 2/212 (0%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            G   A +     +     +++    ++      ++     +       F    + D   
Sbjct: 53  GGVTAAGINHPTGIQIGLGSKVVSTEKIFSQGNFQQTGNPLDIAIEGDGFFQVTLPDGTI 112

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +  S  +  +    +   +L +           +         +    ++       
Sbjct: 113 GYTRNGSFKVDADGNLVTAEGYLLEPNIAIPDNALEIIVGEDGTLSVTLPGEAEPTELGQ 172

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A       L    +N   +L+   S      +  +  F  +++       VN+ EE+
Sbjct: 173 IELAKFINPSGLRSIGKNI--YLQTAASGEPTTGIPGEDGFGTLAQGILEMSNVNVVEEM 230

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             LI  +++Y I++K I   D+MLQ +    +
Sbjct: 231 VNLITGQRAYEINSKAIQTGDEMLQIVNNLKR 262



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 46/236 (19%), Gaps = 31/236 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +L     A +          +I  N+ N +   + +                  VT    
Sbjct: 1   MLRTLWTAASGMTTQQINIDNISNNLANVNTAGFKKSRVNFEDLLYQELKPAGGVTAAGI 60

Query: 56  R--------------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          S  K           + +        F  +               
Sbjct: 61  NHPTGIQIGLGSKVVSTEKIFSQGNFQQTGNPLDIAIEGDGFFQV------TLPDGTIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIEL 158
                 +   +         +L   +      +   V    T +  +       +     
Sbjct: 115 TRNGSFKVDADGNLVTAEGYLLEPNIAIPDNALEIIVGEDGTLSVTLPGEAEPTELGQIE 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDA-HDFLDQRDVLLQKISEIIGISTIVRN 213
               +          N  ++   + +        D    L Q I E+  ++ +   
Sbjct: 175 LAKFINPSGLRSIGKNIYLQTAASGEPTTGIPGEDGFGTLAQGILEMSNVNVVEEM 230


>gi|291484181|dbj|BAI85256.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           natto BEST195]
          Length = 264

 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 70/243 (28%), Gaps = 3/243 (1%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              N  TV  + + +    +V  +  G +     I         +     +   +     
Sbjct: 25  NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + S    +    +      I  G      +      +                +GG++
Sbjct: 83  SATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    ++     +     +   ++     +     +  L +  RN       N   
Sbjct: 143 KIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTFANSDGLDKIGRNLYRE-SLNSGT 201

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +         +   +     V+L +E + +I  ++ +  ++K+I  +D++LQ L+ 
Sbjct: 202 ASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261

Query: 478 GVK 480
             +
Sbjct: 262 LKR 264



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/149 (6%), Positives = 22/149 (14%), Gaps = 13/149 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   N   +   I  NI N +   + +                  +     
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                +SA              +     D  + +          
Sbjct: 61  GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                        +        +      
Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIKIPTDAQ 149


>gi|187778756|ref|ZP_02995229.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC
           15579]
 gi|187772381|gb|EDU36183.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC
           15579]
          Length = 350

 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 81/317 (25%), Gaps = 14/317 (4%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  +   F  Q       +S+ +  +T    N         G  L   V    
Sbjct: 36  DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVG--LGVQVAGIF 93

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 +   T  +  + IDG                 +     +  +     ++     
Sbjct: 94  TKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGDDEGAINGGTMEVSFTKD 153

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                  +   I  +   + G  I       D    +        +   +++ + L    
Sbjct: 154 GSFNLDEDGSLITSDGLRIMGYAIDSAAITKDATTGKIKVGFKNADEDPKADATKLVPLA 213

Query: 356 S------VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                   S+K       +     ++    D  +       +A       L +  +N   
Sbjct: 214 IPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYR 273

Query: 410 WLEKNRSDSHDLHMKSQV------VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +          +         +  +         V+L EE + +I   +++    K
Sbjct: 274 NSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGK 333

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I   D++LQ L+   +
Sbjct: 334 MITTGDEILQELVNLKR 350



 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 25/142 (17%), Gaps = 26/142 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 17  MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 76

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              +      +        F  + +   +D    ++
Sbjct: 77  GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTIST 133

Query: 100 PTHYISKLRDSLESYSKNLSED 121
                  +       S      
Sbjct: 134 SGDDEGAINGGTMEVSFTKDGS 155


>gi|307719964|ref|YP_003891104.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294]
 gi|306978057|gb|ADN08092.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294]
          Length = 709

 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/438 (11%), Positives = 110/438 (25%), Gaps = 4/438 (0%)

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             SP   T                   ++             +           N  +  
Sbjct: 275 GSSPATATASYTILAANTAAQNASVTAAAINALTATTGITATIDSSNKIVLTNTNGNSSA 334

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD-KEIELEISN 162
              +  +  + + N  +     T          +    A   ++    AD ++     +N
Sbjct: 335 SHNIDIASVTGANNPFDASEDDTTAYKYSYNSASPTVVAGSNKEFTTIADLRQALENQAN 394

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                + + V+ +       S  D+        V     S I   +   RN   +    +
Sbjct: 395 SEAGATGIKVIVNDQGKIELSNTDSGSIDLNFKVTGISGSGITENTRFTRNMEALNTVLA 454

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            GTT              +S  +           +                 ++ + +  
Sbjct: 455 AGTTGKAFSQAFNAATHSSSIDIFDSLGSKHTLRMEFRKTALDTTTGSTWSIVITVPEPA 514

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                    E  +  I   ++      N  NV          D    L  G +       
Sbjct: 515 TIDTIAPTYE-KKGSIRFNNDGSLATYNPPNVSFSGNNGSAPDQQVNLSFGTANKFDGMT 573

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
            + S  +                  +     L+  + +  +       +A    N  L  
Sbjct: 574 SFDSRSATSGISQDGYTGGDLVGIRIDQSGTLVGSFSNGRSFGLAQIGMAKFTNNEGLST 633

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N   +++   S    +   +      I  +      V+L   L+ LI +++ +  + 
Sbjct: 634 EGGNV--YVQTANSGDPIIGTAATAGRGFIQSAALEASNVDLSRALTQLIIIQRGFQANG 691

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K I  +D++LQTL+   +
Sbjct: 692 KTITTSDQLLQTLIGLKQ 709



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/430 (6%), Positives = 82/430 (19%), Gaps = 29/430 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +   +          NI N +   +       +                  
Sbjct: 1   MLKSLFSGVSGLQSHQVAMDVESNNIANVNTVGFKYSRANFSDLLAQTKAIATAPQGQLG 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                +     T  S  +      +               F  +     + D  N     
Sbjct: 61  GKNPVQVGLGSTVSSMTRIFSQGSIQNSDKNTDVAIQGDGFFII-----SPDGGNTYKYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR-EVQKIRADADKEIELEIS 161
                +        + +  I    + D     V +        +        +  +  + 
Sbjct: 116 RAGDFKFDAGGNFVDNNGFIAQGWLRDPVTGKVDSTAPIENINIAPGLTTPAQPTQEVVL 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                   +                               S  +G+              
Sbjct: 176 KANLNSGAIVESFSPAYQVPTGAPTDPALPAIDGNGNPIESGNVGVMFNESG---EAFSL 232

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            DG  ++ +     +    ++    +       + +V + + GS+         +   ++
Sbjct: 233 QDGQGVWASFISSTSTSTNSAQGSDTALAADEAETIVFNLDPGSSPATATASYTILAANT 292

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                      +  +   +       + N   +             +      +      
Sbjct: 293 AAQNASVTAAAINALTATTGITATIDSSNKIVLTNTNGNSSASHNIDIASVTGANNPFDA 352

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            +  +         +       + K      DL     +  N       +  I  +   +
Sbjct: 353 SEDDTTAYKYSYNSASPTVVAGSNKEFTTIADLRQALENQANSEAGATGIKVIVNDQGKI 412

Query: 402 EYARNSIGWL 411
           E +    G +
Sbjct: 413 ELSNTDSGSI 422


>gi|326796597|ref|YP_004314417.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1]
 gi|326547361|gb|ADZ92581.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1]
          Length = 565

 Score = 81.2 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/417 (10%), Positives = 102/417 (24%), Gaps = 18/417 (4%)

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
           +   S E    + S+ +      +           +Y++ +++       +  A+    N
Sbjct: 150 QATTSVEIQANLNSSAEDVPPYISQSFDPSDTDTYTYAQTVTDSANNVVTLYYAKSETPN 209

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
                  V     D      L    +    ++ ++ N A     +   +           
Sbjct: 210 TYQVYMTVNGELQDDSGNAFLGDYFVTFDDADGSLTNTAYSAVYSGTTEPTVGDIPTVAP 269

Query: 198 LQKIS---EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +   +        +  V N     +    G                 S+     +   + 
Sbjct: 270 ITPTTIPLNYADATATVNNTPLGDINLGAGLDPSAGELTTSEGHARESFDPQDANTYTYN 329

Query: 255 DGVVVSSNQGSAVPKG---------KIKALLQIRDSVVPIFQNQLDEMARVLI----GSF 301
           +   +  + G A   G             +    D         L      ++       
Sbjct: 330 NTNTIYDSLGEAHTVGYYFIKQGEDNTWEVKVTVDGETTDANGNLYLPEDTIVKFDSSGN 389

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                        P       I   D     G  E    +    +  S            
Sbjct: 390 LTGTFTGYEPYTTPVPATDLTITGWDPTNLTGELEISFDDSTQYAITSTDTFSQDGFAAG 449

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                +      L+  Y +          +A  +    L        GW+  + S + ++
Sbjct: 450 ELQGVSFDEDGFLVATYTNQQTATLGQIALATFDNTDGLNP--SGDTGWVASSSSGAANI 507

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +      I         V+L  EL  LI+ +++Y  ++K +   + + QT++  
Sbjct: 508 GKANTGTLGSIKGGSLEESNVDLTSELVALIEAQRNYQANSKTLETENTVTQTIINL 564



 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/415 (8%), Positives = 82/415 (19%), Gaps = 24/415 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----------VTVVT 54
            FN A +    ++        NI NAD   + +                       + V+
Sbjct: 2   GFNTALSGIKASADYLGVTGNNIANADTTGFKKSRIEFGDLYNTNVIGSGSSNTIGSGVS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +  ++      +   + +        F  + +                   +   E  
Sbjct: 62  VNNVAQDFSAGNYNDTGNNLDVAIDGSGFFVVDQGGVQT-------YTRAGDFKLDEEGN 114

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
                   +          V  +   +   ++        +    +       S    V 
Sbjct: 115 LVTNDGGFVQGY-----NSVNGSIGGTLENLKVPTERIAPQATTSVEIQANLNSSAEDVP 169

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I               Q           +  +     N   V  T +G    ++    
Sbjct: 170 PYISQSFDPSDTDTYTYAQTVTDSANNVVTLYYAKSETPNTYQVYMTVNGELQDDSGNAF 229

Query: 235 IN-FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           +  +         S +N  +      ++                            ++  
Sbjct: 230 LGDYFVTFDDADGSLTNTAYSAVYSGTTEPTVGDIPTVAPITPTTIPLNYADATATVNNT 289

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
               I   +  DP AG      G           N      + TI  +        +   
Sbjct: 290 PLGDINLGAGLDPSAGELTTSEGHARESFDPQDANTYTYNNTNTIYDSLGEAHTVGYYFI 349

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                  +   V       D   +     +    FD    +    T  E     +
Sbjct: 350 KQGEDNTWEVKVTVDGETTDANGNLYLPEDTIVKFDSSGNLTGTFTGYEPYTTPV 404


>gi|451871|gb|AAB59019.1| flagellar hook-filament junction protein [Bacillus subtilis]
          Length = 129

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 18/128 (14%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           S       A+   +      ++   N+ NA+   Y R+                      
Sbjct: 3   STFMGLETARRALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAG 62

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                V   +         D      +++ G         +  E +  ++  ++     +
Sbjct: 63  QMGTGVQGKSVERIRDIFLDYQYRLQNNSAGYYDTKAKALSQMEGVL-NETDDSGLNSVL 121

Query: 105 SKLRDSLE 112
           +   +SL+
Sbjct: 122 NSFWNSLQ 129


>gi|256059804|ref|ZP_05449999.1| flagellar hook protein FlgE [Brucella neotomae 5K33]
 gi|261323784|ref|ZP_05962981.1| flagellar hook protein flgE [Brucella neotomae 5K33]
 gi|261299764|gb|EEY03261.1| flagellar hook protein flgE [Brucella neotomae 5K33]
          Length = 396

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLIVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393


>gi|148558720|ref|YP_001258004.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840]
 gi|148370005|gb|ABQ62877.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840]
          Length = 377

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 133 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 190

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 191 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 250

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 251 QAVINGQAPSSIKGMDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 308

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 309 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 368

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 369 MDVLVNLKR 377



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/392 (9%), Positives = 99/392 (25%), Gaps = 30/392 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T         
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAG------- 53

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                  ++ S           +  ++          ++                 N + 
Sbjct: 54  -----QYNSGSVLTDLAIDGNGYFVVQ------GPGGSTYLTRAGSFVPDKNGDLVNSAG 102

Query: 121 DILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
             L                ++                     +     +   +      +
Sbjct: 103 YYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHKT 162

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  + 
Sbjct: 163 SLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNVA 222

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             +          +   +++    +     V + Q  +  KG          +V      
Sbjct: 223 VNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGMDVGNDGAVVAVYENGTQ 282

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           ++     +   +  ++  +   +  +P     D           G   +  +        
Sbjct: 283 KVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADIA 342

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             L D     + +  N K      +L++   +
Sbjct: 343 QELTDMIEAQRSYTANSKVFQTGSELMDVLVN 374


>gi|163845457|ref|YP_001623112.1| flagellar hook protein FlgE [Brucella suis ATCC 23445]
 gi|163676180|gb|ABY40290.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 396

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 96/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASMVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDDNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +   +  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393


>gi|213028802|ref|ZP_03343249.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 293

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 65/250 (26%), Gaps = 9/250 (3%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           + VP    F   ++ +   +      D    + +      K K                 
Sbjct: 52  DPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAAT 111

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                +  L  + +      G      G                     +    Q     
Sbjct: 112 APTTASTTLKFNENGILESGGTVNITTGTIN-------GATAATFSLSFLNSMQQNTGAN 164

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           + +    +  K        +     ++ +Y +   +      +A    N  L     N  
Sbjct: 165 NIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV- 223

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            W     S    L       F  ++        V+L +EL  +I  +++Y  + + I   
Sbjct: 224 -WAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ 282

Query: 469 DKMLQTLLEG 478
           D++L TL+  
Sbjct: 283 DQILNTLVNL 292


>gi|311068150|ref|YP_003973073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942]
 gi|310868667|gb|ADP32142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942]
          Length = 264

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/258 (7%), Positives = 68/258 (26%), Gaps = 6/258 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI-RDSVVPI 285
           +          + + +      +       V         +  G          +S    
Sbjct: 9   ISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGAQVGGTNSKQIG 68

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
             +    +  +   S ++      +       +      +       G            
Sbjct: 69  LGSSTGTIDTIHSTSATQSTGRTLDLAIDGDGYFQIDNGEGTVYTRAGNFYLDNEGKLVT 128

Query: 346 SNPSFLRDGGSVSKKFLWNVKN--LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
            +  +++  G        + +N  +     +          +     +     +  L + 
Sbjct: 129 GDGYYVQKLGGGEITIPKDAQNFTIGPDGSVSIVGAGGEKIDGGQIGIVTFANSDGLDKI 188

Query: 404 ARNSIGWLEKNRSDSHDLHM-KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
             +   + E + S +              +   +     V+L +E + +I  ++ +  ++
Sbjct: 189 GNSL--YRESSNSGTPSAANIPGDGGTGELKSGFLEMSNVDLTDEFTEMIVAQRGFQSNS 246

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K+I  +D++LQ L+   +
Sbjct: 247 KIITTSDEILQELVNLKR 264



 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 27/140 (19%), Gaps = 13/140 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51
           +L       +   N   +   I  NI N +   + +                + +   V 
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGAQVG 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYISKLRD 109
               +          +    S    Q   +        +     D+   +          
Sbjct: 61  GTNSKQIGLGSSTGTIDTIHSTSATQSTGRTLDLAIDGDGYFQIDNGEGTVYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVID 129
             E          + K    
Sbjct: 121 DNEGKLVTGDGYYVQKLGGG 140


>gi|237753142|ref|ZP_04583622.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375409|gb|EEO25500.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 758

 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/358 (9%), Positives = 86/358 (24%), Gaps = 4/358 (1%)

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
             V     +       + +   ++  +  +        L           D     +A+ 
Sbjct: 403 NRVKAFGGDSTAYGQAAGQNAGRVPDNYGESAYGVKITLNSLGQFEINNQDDGIKASATA 462

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                   + D L   +S     +          +   +   L E            +  
Sbjct: 463 GPGGFHNPEFDSLNIFVSAFNDENNTTNVLFKNQMKAMNTGVLVEGGQVTTTAGLRMATF 522

Query: 245 VTSESNPIFIDGV--VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +      +          +     +   + ++     ++     + + +    +    
Sbjct: 523 AQTVDIYDSLGNKHEFTMQFEKVGDSEWSFRIIVPEPAELIGSSAQRPNILEGGSVTFGE 582

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             + +  N  ++            + +L  G                     G      +
Sbjct: 583 NGELLGVNPSSIQFKPNTGASFPQNIELDFGKGGGFDGLTSTSRESQAQNVNGDGYASGV 642

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                      LI  + +  N       +A       L E   N     E   S    + 
Sbjct: 643 LKEYYFDATGTLIGSFDNGQNLALAQVAIATFANYEGLQESGSNLFA--ESANSGRATIG 700

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    ++ S       +L   L+ LI V++ +  ++K I   D++L TLL   +
Sbjct: 701 TAGTGGRASVAASKLEMSNADLSRGLTQLIVVQRGFQANSKSITTADQVLNTLLGLKQ 758



 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/434 (8%), Positives = 83/434 (19%), Gaps = 49/434 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L       +              NI N +   +       +                  
Sbjct: 1   MLRSLWSGVSGMQAHQIALDVESNNIANVNTTGFKYSRADFSTMVSQTKRSATIPYAGYG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V            +  K      L             +    +           ++   
Sbjct: 61  GVNDFSVGLGTGIETTTKIFEQGSLQNTDRKGDLALEGKGMFVVSNN-----GGYSNMYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAE----------EVVQNFNTSAREVQKIRADA 152
                         N S  I+   V D ++            V +           R   
Sbjct: 116 RDGAFMFDAVGNLVNTSGFIVQGWVRDLSKLNCACGSDSLNRVDSTGPVGNITIDPRLTI 175

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS---- 208
             +    +       S     N        S    +      D L     +   I     
Sbjct: 176 PAKKTGVVVGNINLTSGNKTENIGCPSPLDSSSANNYVAGGLDRLYDTSDKQHEIPQDMG 235

Query: 209 -TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV--VVSSNQGS 265
                    M +    G  +          E   +    + +  + I+G     +++  +
Sbjct: 236 VMFNDAGEAMRLQEGQGIWISYQTATAEPLELGGNIPAGAVTTTVNINGQEITWTNDPTA 295

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-------GNSENVPGLF 318
                 + A   I +         + +   +++ + ++ D              N     
Sbjct: 296 NGSSHLLAAQRAINNYKDKTGVEAIIQGDTLVLQNKNQLDGDGRNKNIRATGFNNGIFDG 355

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
              G  D D  +                +    R    +      +   +  +      Y
Sbjct: 356 GGFGGNDADATVTTAFEYRYSKQTTPSLDDGQFRSTEDLRILMQHDANRVKAFGGDSTAY 415

Query: 379 CDSFNKNFIFDPVA 392
             +  +N    P  
Sbjct: 416 GQAAGQNAGRVPDN 429


>gi|161621182|ref|YP_001595068.1| flagellar hook protein FlgE [Brucella canis ATCC 23365]
 gi|254702383|ref|ZP_05164211.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686]
 gi|260568714|ref|ZP_05839183.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40]
 gi|261752946|ref|ZP_05996655.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686]
 gi|161337993|gb|ABX64297.1| flagellar basal body FlaE domain protein [Brucella canis ATCC
           23365]
 gi|260155379|gb|EEW90460.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40]
 gi|261742699|gb|EEY30625.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686]
          Length = 396

 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 95/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
                   +    I                        S                  N +
Sbjct: 61  LTDVHYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +   +  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393


>gi|153951692|ref|YP_001399003.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939138|gb|ABS43879.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 875

 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/361 (9%), Positives = 97/361 (26%), Gaps = 5/361 (1%)

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L +      +        +A   + ++   +      ++N+ +     T+          
Sbjct: 517 LQRDARYGVDYDGSGKFAAADVNENVKVVVNSSGAFSLTNVNKTTQSPTLSTGNNNIGQG 576

Query: 183 S-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                + +          +   +       +    +      G  + ++    ++     
Sbjct: 577 PLNFTSKNMNFNITAYTDERGTVSTNDAFTKIFKGLDGSFPTGNQVKQSEILKLSAFSAG 636

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                S  +   ++   V  +            +     + +       + +        
Sbjct: 637 LEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINATGEGPNNIIVGTARFN 696

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           ++      N   +          +   KL  G S +        S  +            
Sbjct: 697 NDGSLSNYNPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYPSG 756

Query: 362 LWNVKNLAGY--PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               + +      +++  + +          +A +  N  L E   N   +     S + 
Sbjct: 757 NLKPEGIRVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNL--FKVTANSGNI 814

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +          +  +      V+L   L+ LI +++ Y  ++K I  +D+MLQTL++  
Sbjct: 815 VVGEAGTGGRGEMKTAALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLK 874

Query: 480 K 480
           +
Sbjct: 875 Q 875



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/438 (7%), Positives = 85/438 (19%), Gaps = 46/438 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GQNPLQIGLGVSVSSTTRIHSQ---GSVQITDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAQSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    +   + +         K       +         +    I    +
Sbjct: 173 VAIKANLNSGLNIGTASTPLYSLDSVHGFNQKTGETKDENDVGTTQFYTTSKNAIEVAEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK- 271
             +   ++ + G  L     + I     ++   T++      D  +  +   +    G  
Sbjct: 233 GVDAGALFNAKGQGLNLRDGQGIWVSYTDAKYSTNKVGVNAFDPNLQQNQTVAFWGNGNQ 292

Query: 272 -------IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                  I  ++   D++  I +         +     E   +                 
Sbjct: 293 KTRLDIVINGVVIQTDTIGSIDEAITYINTFTVPTDAREGTGVRAVKNADGSGIDFINTN 352

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                        +  N              +          N    P +  +    +  
Sbjct: 353 SDGTTDNMKNINLVVTNANTAGELWNAVWDTNNKTFSFNQGNNGGQQPTINKNGSSLWTA 412

Query: 385 NFIFDPVAGINTNVTLLE 402
           N +       N  +TL  
Sbjct: 413 NTMTPNPPNANNAITLNG 430


>gi|39912|emb|CAA39528.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 264

 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 3/243 (1%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              N  TV  + + +    +V  +  G +     I         +     +   +     
Sbjct: 25  NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + S    +    +      I  G      +      +                +GG++
Sbjct: 83  SATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    ++     +     +   ++     +     +  L +   N       N   
Sbjct: 143 KIPTDAQTFSIGSDGKVSIVDAEGKTQDGGQIGIVTFANSDGLDKIGSNLYRE-SLNSGT 201

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +         +   +     V+L +E + +I  ++ +  ++K+I  +D++LQ L+ 
Sbjct: 202 ASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261

Query: 478 GVK 480
             +
Sbjct: 262 LKR 264



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/149 (6%), Positives = 22/149 (14%), Gaps = 13/149 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   N   +   I  NI N +   + +                  +     
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                +SA              +     D  + +          
Sbjct: 61  GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                        +        +      
Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIKIPTDAQ 149


>gi|23500854|ref|NP_700294.1| flagellar hook protein FlgE [Brucella suis 1330]
 gi|38257619|sp|Q8FUS9|FLGE_BRUSU RecName: Full=Flagellar hook protein FlgE
 gi|23464518|gb|AAN34299.1| flagellar hook protein FlgE [Brucella suis 1330]
          Length = 396

 Score = 80.8 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 96/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +   +  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393


>gi|188997557|ref|YP_001931808.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932624|gb|ACD67254.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 266

 Score = 80.5 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 55/226 (24%), Gaps = 28/226 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     + +           I  NI N +   + R                        
Sbjct: 1   MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +      +          L    + +      + F  ++          +   
Sbjct: 61  RVPAGIQIGLGVKVSDVAKMFSQGSLMKTDNPLDVAIQGEGFFKIE------MPDGSEAF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   E Y  N     L   +  +A E V+    +   +V  +R    ++   E+
Sbjct: 115 TRAGNFQIDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKVIVVRNSGGQQTTEEV 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
            N++ +         AI        +A     + D       ++  
Sbjct: 175 GNIKLYKFINPAGLKAIGGNLFKYTEASGQPIEGDPNTDAFGKLTQ 220



 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 2/164 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           E    + + DG +         I     +        S      +       ++      
Sbjct: 100 EGFFKIEMPDGSEAFTRAGNFQIDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKV 159

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             + N       +      +        L     N   +     S        +   F  
Sbjct: 160 IVVRNSGGQQTTEEVGNIKLYKFINPAGLKAIGGNLFKY--TEASGQPIEGDPNTDAFGK 217

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +++ +     VN+ EE+  LI  +++Y +++K I+  D+ML+T+
Sbjct: 218 LTQGFLEMSNVNIVEEMVNLIVAQRAYEVNSKGIITADEMLKTV 261


>gi|313672412|ref|YP_004050523.1| flagellar basal-body rod protein flgg [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939168|gb|ADR18360.1| flagellar basal-body rod protein FlgG [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 262

 Score = 80.5 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 50/185 (27%), Gaps = 4/185 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I             +          +   D  +    + +  ++       +        
Sbjct: 80  IFGQGNFQQTGNQLDIAIEGDGFFQVTMPDGTIGYTRNGSFKLDSNGNIVTAEGYLLEPA 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                     + G    ++                +A       L    RN   +     
Sbjct: 140 IAVPENATSIIIGQDGTVSVTIPGDTNPTELGAIELARFINPSGLKNIGRNL--YQPTAA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S            F  +++       VN+ EE+  +I  +++Y +++K I  +D+MLQ +
Sbjct: 198 SGEPVTGAPGTDAFGTVAQGILEMSNVNVAEEMVNMITGQRAYELNSKAIQTSDEMLQVV 257

Query: 476 LEGVK 480
               +
Sbjct: 258 NNLKR 262



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/173 (6%), Positives = 28/173 (16%), Gaps = 27/173 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      A +          +I  N+ N +N  + +                        
Sbjct: 1   MFRAMWTAASGMTAQQMNIDNIANNLANVNNIGFKKSRIHFEDLLYQEMRPAGGPTAAGI 60

Query: 47  --PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +       +  K           + +        F  +               
Sbjct: 61  NHPTGIQIGLGTKVVATEKIFGQGNFQQTGNQLDIAIEGDGFFQV------TMPDGTIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                 +             +L   +                    I  D + 
Sbjct: 115 TRNGSFKLDSNGNIVTAEGYLLEPAIAVPENATSIIIGQDGTVSVTIPGDTNP 167


>gi|254699262|ref|ZP_05161090.1| flagellar hook protein FlgE [Brucella suis bv. 5 str. 513]
 gi|254706497|ref|ZP_05168325.1| flagellar hook protein FlgE [Brucella pinnipedialis M163/99/10]
 gi|254711218|ref|ZP_05173029.1| flagellar hook protein FlgE [Brucella pinnipedialis B2/94]
 gi|254711818|ref|ZP_05173629.1| flagellar hook protein FlgE [Brucella ceti M644/93/1]
 gi|254714887|ref|ZP_05176698.1| flagellar hook protein FlgE [Brucella ceti M13/05/1]
 gi|256015898|ref|YP_003105907.1| flagellar hook protein [Brucella microti CCM 4915]
 gi|256030153|ref|ZP_05443767.1| flagellar hook protein FlgE [Brucella pinnipedialis M292/94/1]
 gi|256158332|ref|ZP_05456236.1| flagellar hook protein FlgE [Brucella ceti M490/95/1]
 gi|256252734|ref|ZP_05458270.1| flagellar hook protein FlgE [Brucella ceti B1/94]
 gi|260166795|ref|ZP_05753606.1| flagellar hook protein FlgE [Brucella sp. F5/99]
 gi|261216577|ref|ZP_05930858.1| flagellar hook protein flgE [Brucella ceti M13/05/1]
 gi|261219813|ref|ZP_05934094.1| flagellar hook protein flgE [Brucella ceti B1/94]
 gi|261313950|ref|ZP_05953147.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10]
 gi|261318810|ref|ZP_05958007.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94]
 gi|261319447|ref|ZP_05958644.1| flagellar hook protein flgE [Brucella ceti M644/93/1]
 gi|261749702|ref|ZP_05993411.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513]
 gi|261756173|ref|ZP_05999882.1| trypsin inhibitor Kunitz [Brucella sp. F5/99]
 gi|265987183|ref|ZP_06099740.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1]
 gi|265996846|ref|ZP_06109403.1| flagellar hook protein flgE [Brucella ceti M490/95/1]
 gi|255998558|gb|ACU50245.1| flagellar hook protein [Brucella microti CCM 4915]
 gi|260918397|gb|EEX85050.1| flagellar hook protein flgE [Brucella ceti B1/94]
 gi|260921666|gb|EEX88234.1| flagellar hook protein flgE [Brucella ceti M13/05/1]
 gi|261292137|gb|EEX95633.1| flagellar hook protein flgE [Brucella ceti M644/93/1]
 gi|261298033|gb|EEY01530.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94]
 gi|261302976|gb|EEY06473.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10]
 gi|261736157|gb|EEY24153.1| trypsin inhibitor Kunitz [Brucella sp. F5/99]
 gi|261739455|gb|EEY27381.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513]
 gi|262551143|gb|EEZ07304.1| flagellar hook protein flgE [Brucella ceti M490/95/1]
 gi|264659380|gb|EEZ29641.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1]
          Length = 396

 Score = 80.5 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393


>gi|237755437|ref|ZP_04584062.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692401|gb|EEP61384.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 266

 Score = 80.5 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 55/226 (24%), Gaps = 28/226 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     + +           I  NI N +   + R                        
Sbjct: 1   MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +      +          L    + +      + F  ++          +   
Sbjct: 61  RVPAGIQIGLGVKVSDVAKMFSQGSLMKTDNPLDVAIQGEGFFKIE------MPDGSEAF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   E Y  N     L   +  +A E V+    +   +V  +R    ++   E+
Sbjct: 115 TRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKVIVVRNSGGQQTTEEV 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
            N++ +         AI        +A     + D       ++  
Sbjct: 175 GNIKLYKFINPAGLKAIGGNLFKYTEASGQPIEGDPNTDAFGKLTQ 220



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 2/164 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           E    + + DG +         +     +        S      +       ++      
Sbjct: 100 EGFFKIEMPDGSEAFTRAGNFQLDNEGYIVNPEGYRLSPNIQISAPETVLNISISPNGKV 159

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             + N       +      +        L     N   +     S        +   F  
Sbjct: 160 IVVRNSGGQQTTEEVGNIKLYKFINPAGLKAIGGNLFKY--TEASGQPIEGDPNTDAFGK 217

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +++ +     VN+ EE+  LI  +++Y +++K I+  D+ML+T+
Sbjct: 218 LTQGFLEMSNVNIVEEMVNLIVAQRAYEVNSKGIITADEMLRTV 261


>gi|221309506|ref|ZP_03591353.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313830|ref|ZP_03595635.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318753|ref|ZP_03600047.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323025|ref|ZP_03604319.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767369|ref|NP_389511.2| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321315395|ref|YP_004207682.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5]
 gi|239938626|sp|P23446|FLGG_BACSU RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|142919|gb|AAA22444.1| flgG [Bacillus subtilis]
 gi|225184996|emb|CAB13502.2| flagellar hook protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021669|gb|ADV96655.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5]
          Length = 264

 Score = 80.5 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 3/243 (1%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              N  TV  + + +    +V  +  G +     I         +     +   +     
Sbjct: 25  NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + S    +    +      I  G      +      +                +GG++
Sbjct: 83  SATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    ++     +     +   ++     +     +  L +   N       N   
Sbjct: 143 KIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTFANSDGLDKIGSNLYRE-SLNSGT 201

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +         +   +     V+L +E + +I  ++ +  ++K+I  +D++LQ L+ 
Sbjct: 202 ASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261

Query: 478 GVK 480
             +
Sbjct: 262 LKR 264



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/149 (6%), Positives = 22/149 (14%), Gaps = 13/149 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   N   +   I  NI N +   + +                  +     
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                +SA              +     D  + +          
Sbjct: 61  GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                        +        +      
Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIKIPTDAQ 149


>gi|320529456|ref|ZP_08030543.1| fagellar hook-basal body protein [Selenomonas artemidis F0399]
 gi|320138293|gb|EFW30188.1| fagellar hook-basal body protein [Selenomonas artemidis F0399]
          Length = 661

 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/469 (9%), Positives = 122/469 (26%), Gaps = 31/469 (6%)

Query: 40  DTMTTISPENVTVVTQRSENKNM-------FDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
               T +      V   ++            +      S+     +          +   
Sbjct: 196 SVSVTTTGGTKITVDSTADYDFASAATGTPLNGKKLWTSTVDSVTQTATGQIKKMVLEGG 255

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
             + ++  T + +       +  +N +  I G   +    +          ++    A  
Sbjct: 256 TGNDDDPLTRFATAGSTLSLTAVENGTYKIGGTYKLTGTIDTATLQADGTIKLTFQAATP 315

Query: 153 DKEIELEISNLRRFLSELTV-----VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                 ++                 +N  IK  TA      +  + +   L+     + I
Sbjct: 316 PAVTPPDVIVPAPPSGTYKHGDTFTLNLKIKEMTAQTGAQINCDNGQSDKLEAADGDVDI 375

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFE---KMNSYTVTSESNPIFIDGVVVSSNQG 264
           +  V+N       +              +        +           + G    S   
Sbjct: 376 NKAVQNYVRKGRTSDGNVAAVARRGAVKSVTLSLDDGTSVEGLPGQGYKVGGDYYPSYVT 435

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +           +I        +N+   +      ++  ++     +             
Sbjct: 436 NITTYDSRGGSHRIPMLFTKKGENEWKMLFGNGRKTYQYEEEDGTITTMRFSTIEDLKFT 495

Query: 325 DLDNKLCQGISETICVNPQYRSN-------------PSFLRDGGSVSKKFLWNVKNLAGY 371
                     S           +              + +    +  KK +    ++   
Sbjct: 496 TKGRYESGTASIATTHAGADDGSITCNLAGLTQYVGNNTIVGTTNGHKKGVLTSVSIDQS 555

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +   Y ++  +      VA  N    L +   +   + E N S   ++   + +    
Sbjct: 556 GVITGTYDNNVRQAEAQIAVAQFNNATGLTKMGGSL--YQESNNSGPANIKTANDLGV-S 612

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ S      VN+ ++ S +I  ++ +  ++K+I  +D+ML+TL+   +
Sbjct: 613 MTPSALEMSNVNIADQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 661



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/439 (6%), Positives = 76/439 (17%), Gaps = 25/439 (5%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTIS-----------PENVTVVTQRSE--NKNMFDKVL 67
              I  NI N +   +                        V     +      ++    L
Sbjct: 1   MDVIGNNIANVNTTGFKASRVTFADMISQNLSGASSPGTTVGGTNPKQIGLGTSVSSVDL 60

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
             +                          N +            +            +  
Sbjct: 61  LFNDGVAQSTGKNTDVALSGNGTFVVKKGNETYYTRNGAFEFDADGNYVMPGSGHYVQGW 120

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
           + N+E  +                 + E     +      +              +    
Sbjct: 121 MANSEGKLITSGNVGNIKIPKGKSMNSEPTTTATYTNNLNASTKRSIVKSVVVRYADGTT 180

Query: 188 HDFLDQRDVLLQKISEIIGIS------TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +  D           +   +      T+    +      + GT L          + + 
Sbjct: 181 ENVTDYTPPPEDGKPSVSVTTTGGTKITVDSTADYDFASAATGTPLNGKKLWTSTVDSVT 240

Query: 242 SYTVTSESNPIFIDGVVVSSNQ-GSAVPKGKIKALLQIRDSVVP-----IFQNQLDEMAR 295
                     +   G     +        G   +L  + +              +D    
Sbjct: 241 QTATGQIKKMVLEGGTGNDDDPLTRFATAGSTLSLTAVENGTYKIGGTYKLTGTIDTATL 300

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G+       A      P   I         K     +  + +        + +    
Sbjct: 301 QADGTIKLTFQAATPPAVTPPDVIVPAPPSGTYKHGDTFTLNLKIKEMTAQTGAQINCDN 360

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             S K      ++     + N+       +     VA      ++     +         
Sbjct: 361 GQSDKLEAADGDVDINKAVQNYVRKGRTSDGNVAAVARRGAVKSVTLSLDDGTSVEGLPG 420

Query: 416 SDSHDLHMKSQVVFNHISE 434
                          +I+ 
Sbjct: 421 QGYKVGGDYYPSYVTNITT 439


>gi|289627764|ref|ZP_06460718.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866423|gb|EGH01132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 586

 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 114/423 (26%), Gaps = 20/423 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +    +  + +    S  G   +  +   LK+          S    I            
Sbjct: 182 ATYTRVIGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNP------V 235

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVND 175
           + +     +  ++       +++ +++ ++KI   +   +       +          N 
Sbjct: 236 DPNSVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVNGAWVSNGAANG 295

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  +       LD  D L+ +       S +   ++       D       + +  
Sbjct: 296 GTVSLPLNNGS-ISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYF 354

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +  NS+ + +  +         +    + +       +  +         +       
Sbjct: 355 VKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQLT 414

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +   +                  + +      +GI+       Q+ +  S      
Sbjct: 415 GWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NKN     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILCAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAD 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRVIGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPA--EEVNGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|261886055|ref|ZP_06010094.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 262

 Score = 80.5 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 68/255 (26%), Gaps = 6/255 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V +    +  +       +     +    +      +                     
Sbjct: 11  GMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTTMSPTGMEVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---VNPQYR 345
            +   A   +           N + V        I+  D       +             
Sbjct: 71  GVRPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDGDGSIVN 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           S+   L    ++          + G   ++    +          +A       L     
Sbjct: 131 SDGYRLLPEMNIPADATQISVGVDGTVSVLQP-GNQEMTQIGQIELANFINPSGLHAMGD 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +LE   S + ++       F  I + +     V L EE++ LI  +++Y  ++K I
Sbjct: 190 N--NFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEMTDLITGQRAYEANSKAI 247

Query: 466 MFTDKMLQTLLEGVK 480
              D+MLQT+ +  +
Sbjct: 248 TTADEMLQTVNQLKR 262



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/239 (7%), Positives = 44/239 (18%), Gaps = 37/239 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   Y +                        
Sbjct: 1   MIRSLYTAATGMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                     + +        F  ++           
Sbjct: 61  MSPTGMEVGLGVRPTAITKV---FGQGYFKETGNNLDMVIAGNGFFQIQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +   +    N     L   +   A+    +             + +     
Sbjct: 112 TAYTRNGAFKLDGDGSIVNSDGYRLLPEMNIPADATQISVGVDGTVSVLQPGNQEMTQIG 171

Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
           +I          L  +   N      + + +  +   D    + Q   E+  +  +   
Sbjct: 172 QIELANFINPSGLHAMGDNNFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEM 230


>gi|288958564|ref|YP_003448905.1| flagellar hook protein [Azospirillum sp. B510]
 gi|288910872|dbj|BAI72361.1| flagellar hook protein [Azospirillum sp. B510]
          Length = 881

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/442 (10%), Positives = 128/442 (28%), Gaps = 12/442 (2%)

Query: 42  MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           +   +P      + R  N +     + +  S      + QS          D     + +
Sbjct: 449 IQANAPGGAVTTSGRVANASSAANTMSSLPSVSSVAGVRQSRTVTLTGTPGDIGTQYTLS 508

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              + +  S       + +         NA   +    T+   V  + A          +
Sbjct: 509 VNGTAVTYSTTGEEMTMEDITAALANKINANTALPVTATAQGGVITVTAKTPASATTVNT 568

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                   L   +  +    +          +  + L   +     +            T
Sbjct: 569 MTGTGTITLGGTSVDVGDSYSITTRIGGVPQRFSLTLDNANIASFNTPAKVMAQLASQIT 628

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           + G T+ +T           + T  + ++    D          +   G+  A + +   
Sbjct: 629 AAGGTVTQTGSA-------LTVTSDAAASGAVTDAPAPQFTLDQSAAAGRTPAHIGLTFG 681

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV- 340
             P     L  ++  L+G+ +    +A  + +   +           ++   + +     
Sbjct: 682 KTPETVGTLTGISTALVGTGTAVSTVAEAAGSPASVTFTVDYGFGPQQITLNLGKYQKPG 741

Query: 341 --NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  S  +  +   + + +  +          ++ +Y +  ++     P+   N   
Sbjct: 742 GLTQFSGSEINVTQLVQNGAPRGQFKEVVFGENGAVMVNYDNGRSRMIAKVPIVTFNNPN 801

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L   +     ++E   +   +L+         +  +      V++  E + +I  ++ Y
Sbjct: 802 ALQRESGGV--FVESEGAGKPNLNDPKLNGAGAMVANSVEASNVDIASEFTKMIVTQRGY 859

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
           + + K++  +D+MLQ +L   +
Sbjct: 860 SANAKVLTASDEMLQEVLGLKR 881



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/475 (11%), Positives = 112/475 (23%), Gaps = 35/475 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+    + A       S+   +I  NI NA    Y R DT         +        V
Sbjct: 1   MSIFGSRSSALMGLVAQSKALGNISDNIANASTAGYKRVDTTFQSMVLQSSPRNHAPGGV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN------------SPT 101
           T R    N     L + SS        Q F ++  + +                   +  
Sbjct: 61  TARPSFMNDVQGNLTSVSSNTSAAIQGQGFFSVSRLDAQTAGTIGGATGGGATGSGPNVY 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELE 159
             +   + S   +  N S   L   ++D     VQ    +  +V  +     A   I+L 
Sbjct: 121 TRLGDFQLSRTRHLVNSSGFALNGWLVDPVTGAVQKDRVAPVQVNSLIDKPVATSGIDLS 180

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +      +   + + +I+   +  +        R         ++          D   
Sbjct: 181 ANLPATPKAGQKIPDSSIQIFDSQGNPRTVNFKWRQQADSGWRMVVDTPGSNTKPVDGSF 240

Query: 220 -----------YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                        +  T + +     I     N        +   +     S +      
Sbjct: 241 TGNPATVSFGQNIAGQTAVAQVNVVTIAGANTNGQDNLRIGDVYSVKIDGTSYSLKVTAD 300

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                         +    N     A VL  S  +   +   +   P     D +     
Sbjct: 301 NIGSIRTYSGLAGALANQINSASPAASVLATSSGQTIRVTARNPGTPFKLNTDVVSGAST 360

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA---GYPDLINHYCDSFNKN 385
                   +            F      V     + +        Y      Y       
Sbjct: 361 VNSIVPQTSTAATASSGKIDKFQFPQSQVEVGDSFTITVNGTPISYTVTAATYQSYQTVG 420

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
            +   +AG            +  G +   ++++    + +     + S + +   
Sbjct: 421 DVVSQLAGRINKALGSTVTASVAGNILSIQANAPGGAVTTSGRVANASSAANTMS 475


>gi|118475132|ref|YP_891713.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414358|gb|ABK82778.1| flagellar basal-body rod protein FlgG [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 262

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 70/255 (27%), Gaps = 6/255 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V +    +  +       +     +    +      +                     
Sbjct: 11  GMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTTMSPTGMEVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YR 345
            +   A   +           N + V        I+  D       +    ++       
Sbjct: 71  GVRPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDGDGNIVN 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           S+   L    ++          + G   ++    +          +A       L     
Sbjct: 131 SDGYRLLPEMNIPADATQISVGVDGTVSVLQP-GNQEMTQIGQIELANFINPSGLHAMGD 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +LE   S + ++       F  I + +     V L EE++ LI  +++Y  ++K I
Sbjct: 190 N--NFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEMTDLITGQRAYEANSKAI 247

Query: 466 MFTDKMLQTLLEGVK 480
              D+MLQT+ +  +
Sbjct: 248 TTADEMLQTVNQLKR 262



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/239 (7%), Positives = 44/239 (18%), Gaps = 37/239 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   Y +                        
Sbjct: 1   MIRSLYTAATGMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                     + +        F  ++           
Sbjct: 61  MSPTGMEVGLGVRPTAITKV---FGQGYFKETGNNLDMVIAGNGFFQIQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +   +    N     L   +   A+    +             + +     
Sbjct: 112 TAYTRNGAFKLDGDGNIVNSDGYRLLPEMNIPADATQISVGVDGTVSVLQPGNQEMTQIG 171

Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
           +I          L  +   N      + + +  +   D    + Q   E+  +  +   
Sbjct: 172 QIELANFINPSGLHAMGDNNFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEM 230


>gi|225850285|ref|YP_002730519.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1]
 gi|225645911|gb|ACO04097.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1]
          Length = 266

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 54/226 (23%), Gaps = 28/226 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +           I  NI N +   + R                        
Sbjct: 1   MIRALWTSASGMGAQQTNLDVISNNIANVNTVGFKRSRANFEDLIYQDIKDPGVMSSNET 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +      +          L      +        F  ++              
Sbjct: 61  RVPSGIQIGLGVKLSDVSKIFTQGSLIKTDKPLDIAIQGDGFFKIE------LPGGGEAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   E Y    +   L   +  +A E +V    +   +V  +R +  ++   E+
Sbjct: 115 TRAGNFQIDNEGYIVTPNGYRLSPNIQISAPETLVSISISPNGKVYVVRNEGGQQTTEEL 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
           ++++ +         AI        +A     + D       ++  
Sbjct: 175 TDIKLYKFINPAGLKAIGENLFKYTEASGEPIEGDPNTDGFGKLAQ 220



 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 2/164 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +    + +  G +         I     +        S      +       ++      
Sbjct: 100 DGFFKIELPGGGEAYTRAGNFQIDNEGYIVTPNGYRLSPNIQISAPETLVSISISPNGKV 159

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             + N       +      +        L     N   +     S        +   F  
Sbjct: 160 YVVRNEGGQQTTEELTDIKLYKFINPAGLKAIGENLFKY--TEASGEPIEGDPNTDGFGK 217

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +++ +     VN+ EE+  LI  +++Y I++K I+  D+ML+T+
Sbjct: 218 LAQGFLEASNVNIVEEMVNLIVAQRAYEINSKGIITADEMLRTV 261


>gi|157692308|ref|YP_001486770.1| flagellar basal body rod protein FlgG [Bacillus pumilus SAFR-032]
 gi|157681066|gb|ABV62210.1| flagellar basal body rod protein [Bacillus pumilus SAFR-032]
          Length = 263

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 3/132 (2%)

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            L   G              G    I+   ++ ++      +        L +   N   
Sbjct: 134 LLGMNGQKITIPDGVSSVSVGPDGTISVVENNVSRTVGQISLVSFRNAGGLDKVGDNL-- 191

Query: 410 WLEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           + +   S +     +  +     I         V+L +E + +I  ++ +  + K I  +
Sbjct: 192 YRQTLSSGAPSNPIVPGEQGTGVIQTGKLEMSNVDLTDEFTEMIIAQRGFQSNAKTITTS 251

Query: 469 DKMLQTLLEGVK 480
           D++LQ L+   +
Sbjct: 252 DEILQELVNLKR 263



 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/174 (6%), Positives = 39/174 (22%), Gaps = 14/174 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSENK 60
           +L       +   N   +   +  N+ N +   Y +              +     + + 
Sbjct: 1   MLRSLYSGISGMKNFQSKLDVVANNVANVNTHGYKKSRITFKDMVSQTIGSSGGPTNNSG 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQ-----------SFEALKEMMSADDHYNNSPTHYISKLRD 109
           ++  K +   SS     +++             F    +     +               
Sbjct: 61  SINSKQIGLGSSLSSIDKIMSAGSSQNTNEPYDFYINGDGFFRIESQGEVLYTRTGNFDT 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             E        + L          +    ++ +       +  +  +   +  +
Sbjct: 121 DSEGSLVTPDGNYLLGMNGQKI-TIPDGVSSVSVGPDGTISVVENNVSRTVGQI 173


>gi|306841276|ref|ZP_07473987.1| flagellar hook protein FlgE [Brucella sp. BO2]
 gi|306288678|gb|EFM60009.1| flagellar hook protein FlgE [Brucella sp. BO2]
          Length = 383

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 139 PAEGSTAGNFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 196

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 197 SVKNAADGVEIGTTVLNFDPTTGDIVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 256

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 257 QAAINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNV--FL 314

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 315 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 374

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 375 MDVLVNLKR 383



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/387 (8%), Positives = 88/387 (22%), Gaps = 16/387 (4%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
            N  + + +++  NI NA    Y R +T  +      T     S +     +   +    
Sbjct: 1   MNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGISDQGG 60

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
           I                        S                  N +   L     D A 
Sbjct: 61  IRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAGYYLLGAGADEAA 120

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
             +         +  +  +A        +     ++  +            K     + D
Sbjct: 121 GGLTV-----AGLNVVNVNAAALPAEGSTAGNFTVNLPSTDQAPAAGGYNHKTSLISYND 175

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
           + + +       + +       ++  V   +     E     +NF+      V+  +  +
Sbjct: 176 KGEKI------TLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDIVSGGNVAV 229

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            +      +   +     +         ++     N     +   +   ++   +A    
Sbjct: 230 NLGAYGGQTLNLNLGGSTQRAGDY----TISQAAINGQAPSSIKGVDVGNDGAVVAVYEN 285

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
               +     + ++ +     +       P   S    L          + +        
Sbjct: 286 GTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNA 345

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVT 399
           D+     D       +   + +    +
Sbjct: 346 DIAQELTDMIEAQRSYTANSKVFQTGS 372


>gi|114707045|ref|ZP_01439944.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506]
 gi|114537595|gb|EAU40720.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506]
          Length = 390

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/398 (8%), Positives = 90/398 (22%), Gaps = 9/398 (2%)

Query: 84  EALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
            ++  +        N+ ++ +S + D++ + +    +    +          +   TS  
Sbjct: 1   MSINGVFRTSVSGMNAQSNKLSAVSDNIANSATTGYKRADVEFSSLVINSGGRGNYTSGS 60

Query: 144 EVQKIRADADKE-IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
            + + R D   + +    S+                              QR       +
Sbjct: 61  VLSQTRYDISTQGLVTTTSSKTDLAISGDGFFVVEDQNGQPFFTRAGSFVQRTEPDTGET 120

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
            ++  +       +  V    G  +                  T      F         
Sbjct: 121 FLVNAAGYKLTGQNGPVQVPVGEIVAPQATTTSELSMQLPLNGTGTHTGSFTAFNSRGEA 180

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
              ++   +  A         P     +         +     PI               
Sbjct: 181 VNVSMTATRTGADQWDLTFDAPSASAPVTVSVTFDAATGLPNPPITTAGNLQIV------ 234

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                                        +   + +    ++   ++    +        
Sbjct: 235 PPANGGGGAPSTVALNLGQLTSYDAAFTFQAEANGNPATGFSDFTISDDGRVFGILTTGR 294

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                   +A   +   L   + N   +     S         ++ F  +         V
Sbjct: 295 QIELDRIQLARFQSPDQLDVISGNV--FRPSQLSGDPQFGFSGELGFGDLISGALEESNV 352

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L  EL+ +I  ++SY  ++K      +ML  L+   +
Sbjct: 353 DLASELTDMIVTQRSYAANSKTFQTGSEMLDLLVNLKR 390



 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 55/215 (25%), Gaps = 1/215 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+  VF  + +  N  S + +++  NI N+    Y R D   +    N       +   
Sbjct: 1   MSINGVFRTSVSGMNAQSNKLSAVSDNIANSATTGYKRADVEFSSLVINSGGRGNYTSGS 60

Query: 61  NMFDKVL-HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +       +    +             +     +  N  P    +             +
Sbjct: 61  VLSQTRYDISTQGLVTTTSSKTDLAISGDGFFVVEDQNGQPFFTRAGSFVQRTEPDTGET 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +         +              +    ++  ++L ++         T  N   + 
Sbjct: 121 FLVNAAGYKLTGQNGPVQVPVGEIVAPQATTTSELSMQLPLNGTGTHTGSFTAFNSRGEA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
              S        DQ D+     S    ++  V  +
Sbjct: 181 VNVSMTATRTGADQWDLTFDAPSASAPVTVSVTFD 215


>gi|330889084|gb|EGH21745.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 419

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/422 (12%), Positives = 110/422 (26%), Gaps = 18/422 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   L  +   LK+          S    I           +
Sbjct: 15  ATYTRAVGRTIQDAGSGAGATALPAADHELKQYFVKTGDSQWSMYVLIDG---------R 65

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       +    V N A
Sbjct: 66  NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVGGAWVSNGA 125

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T S    +  +   D     +   +        ++           +F++      
Sbjct: 126 ANGGTVSLPLNNGSISMLDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 182

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            ++      T+      +          S  P   + A +                 A  
Sbjct: 183 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 239

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 +                   + +      +GI+       Q+ +  S       
Sbjct: 240 HSNGL-QLTGWTPAMPAERVTGPEKWVPNGAAGSAKGITIDFNNLLQHNAASSRSSTHVD 298

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +  ++     L   + +  NKN     +A       L   AR+   W E   S
Sbjct: 299 GHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESADS 356

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL+
Sbjct: 357 GVADYDVPGVGTLGSLIGDGLEGANVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 416

Query: 477 EG 478
           + 
Sbjct: 417 QS 418


>gi|46578928|ref|YP_009736.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603471|ref|YP_967871.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris DP4]
 gi|46448340|gb|AAS94995.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563700|gb|ABM29444.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris DP4]
 gi|311232786|gb|ADP85640.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1]
          Length = 260

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 4/184 (2%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 +      +       F    +         G  +         +N   L+   +
Sbjct: 81  FSQGDFQNSGNPLDIAIEGDGFFQVLVNGEPRYTRAGAFKLNQDGTVVTANGYVLQPEFT 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           V  +    V   AG+   ++   +         P+        L    RN   ++    S
Sbjct: 141 VPAETKNVVVTEAGHIAALD--ANGQELAAADIPLYTFINPAGLDAIGRNL--YVPSEAS 196

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                 +  +     +++ +     V + +E+  +I  +++Y +++K I  +D+MLQT +
Sbjct: 197 GEAVEGVPGEDNVGTLAQGFLEMSNVEVVDEMVNMIVGQRAYEMNSKAISTSDQMLQTAV 256

Query: 477 EGVK 480
              +
Sbjct: 257 NLKR 260



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 27/152 (17%), Gaps = 28/152 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMVAQQLNIDVISHNLANVNTSGFKKSRAEFEDLMYQNMRIAGSATEGDS 60

Query: 47  --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           + +        F  +               
Sbjct: 61  RIPVGIQVGMGVRPTAVHKFFSQGDFQNSGNPLDIAIEGDGFFQVL-------VNGEPRY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 + + +      +  +L       AE 
Sbjct: 114 TRAGAFKLNQDGTVVTANGYVLQPEFTVPAET 145


>gi|319790434|ref|YP_004152067.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans
           HB-1]
 gi|317114936|gb|ADU97426.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans
           HB-1]
          Length = 266

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 51/226 (22%), Gaps = 28/226 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     + +           I  NI N +   + R                        
Sbjct: 1   MLRALWTSASGMEAQQTNLDVISNNIANVNTVGFKRSRANFEDLMYQDIRDPGVMSSEEN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +      +          L      +        F  ++              
Sbjct: 61  RVPTGIQIGLGVKLSDVSKIFTQGSLIKTDKPLDVAIQGPGFFKIE------LPGGGEAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   E Y        L   +  +A E VV    +   +V  +R    +++  E 
Sbjct: 115 TRAGDFQLDNEGYIVTPEGYRLSPNIQISAPETVVNISISPNGKVYVVRNTGGQQVTEEA 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
             ++ +         AI      + +A     + D       ++  
Sbjct: 175 GTIKLYRFINPAGLKAIGGNLFVQTEASGEPIEGDPNTDGFGKLTQ 220



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 2/168 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                + +  G +         +     +        S      +       ++      
Sbjct: 100 PGFFKIELPGGGEAYTRAGDFQLDNEGYIVTPEGYRLSPNIQISAPETVVNISISPNGKV 159

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             + N       +      +        L     N   +++   S        +   F  
Sbjct: 160 YVVRNTGGQQVTEEAGTIKLYRFINPAGLKAIGGNL--FVQTEASGEPIEGDPNTDGFGK 217

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +++ +     VN+ EE+  LI  +++Y I++K I+  D+ML+T+    
Sbjct: 218 LTQGFLEASNVNIVEEMVNLIVAQRAYEINSKGIIAADEMLRTVASLK 265


>gi|298487856|ref|ZP_07005896.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157581|gb|EFH98661.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 586

 Score = 80.1 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 115/423 (27%), Gaps = 20/423 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +    +  + +    S  G   +  +   LK+          S    I            
Sbjct: 182 ATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNP------V 235

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVND 175
           + +     +  ++       +++ +++ ++KI   +   +       +          N 
Sbjct: 236 DPNSVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVNGAWVSNGAANG 295

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  +       LD  D L+ +       S +   ++       D       + +  
Sbjct: 296 GTVSLPLNNGS-ISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYF 354

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +  NS+ + +  +         +    + +       +  +         +       
Sbjct: 355 VKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQLT 414

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +   +                  + +      +GI+       Q+ +  S      
Sbjct: 415 GWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NKN     +A  +    L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILCAGFTNGMNKNIGQVILASFSNPQGLQ--ARSDTRWTESAD 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPA--EEVNGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|83310488|ref|YP_420752.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1]
 gi|82945329|dbj|BAE50193.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1]
          Length = 545

 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 59/540 (10%), Positives = 129/540 (23%), Gaps = 68/540 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           L   F  A            SI +NI N +   Y  ++T+                    
Sbjct: 2   LFGAFTNASQAMQTMDWAMGSISQNIANVNTTGYKEKETLFKTVLSETHTSPPTSQNSPT 61

Query: 44  -TISPENVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----- 95
              +   + +   R+ ++ M  K   + A ++        + F  +    S         
Sbjct: 62  KNTATTGLDIFGVRAVDRTMVSKSGTITASTTWSDMAINGRGFFIVTPPDSTGAPQTTLS 121

Query: 96  YNNSPTHYISKLRD---SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
            +N+             +  +Y      + L     DN   V +  +     + +     
Sbjct: 122 SSNTLYTRAGDFTQRAVNGNNYFTTADGNFLMGWAADNLGVVSKTLSPVYANLGQKSDGM 181

Query: 153 DKEIELEISNL---------------------------------RRFLSELTVVNDAIKF 179
                  ++N+                                  R   +   V+ ++  
Sbjct: 182 ATTSIQLVANVPSNATMTGATKTFTDTTSVTDGFGTAQDLTMTWNRVSGDTWTVDFSLPA 241

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             AS            V++     I   +T         +               IN   
Sbjct: 242 NPASGSVGTITGSPVTVVMDASGNITSPTTSASGTGFADLTFDWSAGPTMQNTASINLTS 301

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                          DG   S N                   V                 
Sbjct: 302 NKPTVQGISETIAVYDGAFNSHNLTMNFEHASNGQWYMSFTPVAAEGAVSSLTADGTAYT 361

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL----RDGG 355
           +          +   P                  I+  +    Q+    +          
Sbjct: 362 NSIPITFDGAGNILTPATAELTVGWTAAGAGSNTITLDMRKLTQFSGETNNKLGVKVIDQ 421

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +       +   ++    ++ HY +  ++     PVA       L   +       E   
Sbjct: 422 NGYASGTMDKVEISTDGSVMAHYDNGESRRIFQIPVASFVAPDQLDAISGTLFRATE-QA 480

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            D     +  Q     I  S + +  V L+++ + +I  +++Y++++ +    D+M QT+
Sbjct: 481 GDMTVASISDQGSGASIVASATESSNVALEDQFTRMIVTQKAYSVNSNVFKTADEMTQTI 540


>gi|320325094|gb|EFW81163.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 586

 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/422 (12%), Positives = 111/422 (26%), Gaps = 18/422 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  S   LK+          S    I           +
Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       +    V N A
Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +   T S    +  +   D     +   +        ++           +F++      
Sbjct: 293 VNGGTVSLPLNNGSISMLDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            ++      T+      +          S  P   + A +                 A  
Sbjct: 350 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 406

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 +                   + +      +GI+       Q+ +  S       
Sbjct: 407 HSNGL-QLTGWTPAMPAERVTGPEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHVD 465

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +  ++     L   + +  NKN     +A       L   AR+   W E   S
Sbjct: 466 GHAAGQLSSLSVGRDGILRAGFANGMNKNIGQVILASFANPQGLQ--ARSDTCWTESADS 523

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL+
Sbjct: 524 GVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 583

Query: 477 EG 478
           + 
Sbjct: 584 QS 585



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 85/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V         +   
Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAVNGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|289651646|ref|ZP_06482989.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 586

 Score = 80.1 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 114/423 (26%), Gaps = 20/423 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +    +  + +    S  G   +  +   LK+          S    I            
Sbjct: 182 ATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNP------V 235

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVND 175
           + +     +  ++       +++ +++ ++KI   +   +       +          N 
Sbjct: 236 DPNSVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPAEEVNGAWVSNGAANG 295

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                  +       LD  D L+ +       S +   ++       D       + +  
Sbjct: 296 GTVSLPLNNGS-ISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYF 354

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +  NS+ + +  +         +    + +       +  +         +       
Sbjct: 355 VKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQLT 414

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +   +                  + +      +GI+       Q+ +  S      
Sbjct: 415 GWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NKN     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILCAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAD 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRVVGRTIQDAGSGAGATAVPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLQVTLEQRPNGSLSYSGNSQHLRKISDTEFALQGWRPA--EEVNGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|253573527|ref|ZP_04850870.1| flagellar basal body rod protein FlgG [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847055|gb|EES75060.1| flagellar basal body rod protein FlgG [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 274

 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 41/122 (33%), Gaps = 3/122 (2%)

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                 +A    ++    +          VA +     L +   N         +D    
Sbjct: 153 AVTAFTIASDGTMMLKNPEGGTDPGEIIGVARVTNPEGLEKIGGNLYRVTLNAIADGELT 212

Query: 422 HMK---SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +     ++     +         V+L  E + +I  ++ +  ++++I  +D++LQ ++  
Sbjct: 213 YTNPNNAEEGTGALIVGQLEMSNVDLTGEFTEMIVAQRGFQANSRIITTSDEVLQEVVNL 272

Query: 479 VK 480
            +
Sbjct: 273 KR 274



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/140 (7%), Positives = 26/140 (18%), Gaps = 25/140 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVT------- 51
           +L       +       +   I  NI N +   +     M     + +   VT       
Sbjct: 1   MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKSGRVMFKDIMSQTVSGVTAPVDGES 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V+  S +           ++ +  +     F     ++           
Sbjct: 61  GGVNAKQIGLGVSIGSIDTLHTGGSAMTTNNPLDMRIDGDGFF----LVKLTPDQEVPFL 116

Query: 102 HYISKLRDSLESYSKNLSED 121
                               
Sbjct: 117 TRAGDFHLDAAGQLVTSDGL 136


>gi|206970889|ref|ZP_03231841.1| flagellar hook protein FlgE [Bacillus cereus AH1134]
 gi|228920464|ref|ZP_04083809.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229178162|ref|ZP_04305533.1| Flagellar hook protein flgE [Bacillus cereus 172560W]
 gi|206734525|gb|EDZ51695.1| flagellar hook protein FlgE [Bacillus cereus AH1134]
 gi|228605292|gb|EEK62742.1| Flagellar hook protein flgE [Bacillus cereus 172560W]
 gi|228839094|gb|EEM84390.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 407

 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 98/407 (24%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++   +        ++ Q+   ++               + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVPGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G                 I   +     + ++ +                  +A    
Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     + 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGTSGQNGAGKVR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 74/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  +  +    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                        ++ F+ + +     +   I  DG  +  +          K L     
Sbjct: 225 KETEFKDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGTSGQNGAGKVRGGAQEGANVD 370


>gi|260772274|ref|ZP_05881190.1| flagellar hook protein FlgE [Vibrio metschnikovii CIP 69.14]
 gi|260611413|gb|EEX36616.1| flagellar hook protein FlgE [Vibrio metschnikovii CIP 69.14]
          Length = 356

 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/377 (10%), Positives = 94/377 (24%), Gaps = 27/377 (7%)

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                   + +      +E         +    +   N       ++  D  + +  E  
Sbjct: 6   AGTGFFAVAKDRLIPQQNELTRNGAFHLDKNNYMVTSNDQYLLGYEVNPDNGEVLSYEPK 65

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +                 +A+     D  D     +         ++    ++    Y 
Sbjct: 66  PINIPAQFGKPKQTGNIELSANLPANGDLKDPALFDITDPDTYNRTTSSTIYDSMGQPYK 125

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
                L +    +           T E       G  VS N            L    D 
Sbjct: 126 LTTYYLKDQNENNKWNTYYTVTDKTGEKPLNIAGGDAVSPNGHVGHT------LRFNNDG 179

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +    N    ++       +  D    +                     Q ++  +   
Sbjct: 180 TLASINNGNPIVSAAFGEGDNPIDLNGAD-------------------GSQTLAFNLNGA 220

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
            Q+ +     +     +        +   Y  ++  Y +  N       +  +     L 
Sbjct: 221 TQFAAPFELTKFDQDGATTGFLTKIDFDEYGSVLATYSNGQNVTLGRVAMVRVANEQGLD 280

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +  +    W    +S        S+  F  IS        +++ +EL  LI  ++++  +
Sbjct: 281 K--KGGTQWDSTQQSGVKIWGESSKGSFGTISNGVLEQSNIDMTQELVDLISAQRNFQAN 338

Query: 462 NKLIMFTDKMLQTLLEG 478
           ++ +     + QT+L+ 
Sbjct: 339 SRALEVHTGLQQTILQI 355


>gi|57506151|ref|ZP_00372072.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
 gi|57015546|gb|EAL52339.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
          Length = 853

 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 86/362 (23%), Gaps = 4/362 (1%)

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D       + +  +                          S           V       
Sbjct: 494 DARYGVDYNGSGRIDNAPPAYDAADINQAVKVVVTENGNFSISNANQISTIPVGAGHGQN 553

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           TA    A +           + ++       +         + G+   E+    ++   +
Sbjct: 554 TAQTTQAKNMNFNITAYTDALGKVSTNDAFTKIFKAFDGVQTVGSQKKESEQLKLSAFSV 613

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 S  N   ++   V               +     + +       + +       
Sbjct: 614 GLEIFDSLGNKHTLEVQFVKQTTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARF 673

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            ++    + N + +          +   KL  G S          S  +           
Sbjct: 674 NNDGSLASYNPKTLNFSPNNGAAPNQQIKLSFGTSGANDGLVSSSSASTLTNQATDGYTS 733

Query: 361 FLWNVKNLAGYPDL--INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                  +        +  + +          +A +  N  L E   N         S +
Sbjct: 734 GNLKPDAIRVDDKGHILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTGN--SGN 791

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +          +  S      V+L   L+ LI V++ Y  ++K I  +D+ML TLL+ 
Sbjct: 792 IVVGEAGTGGRGEMKTSALEMSNVDLSRSLTQLIVVQRGYQANSKTISTSDQMLNTLLQL 851

Query: 479 VK 480
            +
Sbjct: 852 KQ 853



 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/426 (7%), Positives = 87/426 (20%), Gaps = 38/426 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTAGFKYSRADFGTMFSQTVKIATVPTENLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                      ++ +    +       +   +           F  + +     D     
Sbjct: 61  GQNPLQIGLGTSINSTTRIHSQ---GSVQTTNKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+ +++ +    +                  E
Sbjct: 113 YLTRDGDFKLDAAGNFVNNAGFVVQGWNINWSDQSIDTSRSPKNLFIDPGLHIPAAKSTE 172

Query: 160 ISNLRRFLSELTVVND-------AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           ++      S L + N                K       +   +     +   GI    +
Sbjct: 173 VAVKANLNSGLNIGNAARPLYALDSIHGFNQKTGETKNENDTGITQFYTTSKNGIEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++  +G  L     + I     ++   T  +  + I     ++ Q + V     
Sbjct: 233 GVDAGALFNGNGKGLNLREGQGIWVSYADATFTTDRAQNVNIFDPNSTAQQQNNVQFWGH 292

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
             +       +   Q +   +  +                      IA   +D       
Sbjct: 293 ADVPATLSITLNGVQIRNTNIKSLDEAIAYINTFTNPADGRDGTGVIATKKEDGSGITFT 352

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             +     +     N +   D  +     +    N   +         + N +     VA
Sbjct: 353 NQNSNGTTDNMKNINLTVNLDNSAGEATTIDRDPNAGKFSAQGGQLPTAQNDSSWITNVA 412

Query: 393 GINTNV 398
                 
Sbjct: 413 QGGNPQ 418


>gi|296330843|ref|ZP_06873318.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674361|ref|YP_003866033.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151848|gb|EFG92722.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412605|gb|ADM37724.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 264

 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 68/243 (27%), Gaps = 3/243 (1%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
              N  TV  + + +    +V  +  G +     I         +     +   +     
Sbjct: 25  NIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIGGTNS--KQIGLGSSSGTIDTIHST 82

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + S    +    +      I  G      +      +                +GG++
Sbjct: 83  SATQSTGRTLDLAIDGDGYFRIDTGDGIAYTRAGNFYLDNTGTLVTGDGYHVLNMNGGTI 142

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    ++     +         ++     +     +  L +   N       N   
Sbjct: 143 QIPTDAQSFSIGSDGKVSIVDAGGQTQDGGQIGIVTFANSDGLDKVGSNLYRE-SLNSGT 201

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +         +   +     V+L +E + +I  ++ +  ++K+I  +D++LQ L+ 
Sbjct: 202 ASAANQPGDGGTGSLKSGFLEMSNVDLTDEFTEMIVAQRGFQSNSKIITTSDEILQELVN 261

Query: 478 GVK 480
             +
Sbjct: 262 LKR 264



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/149 (6%), Positives = 21/149 (14%), Gaps = 13/149 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   N   +   I  NI N +   + +                  +     
Sbjct: 1   MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60

Query: 63  FDKVLH-------------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                                +SA              +     D  +            
Sbjct: 61  GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGIAYTRAGNFYL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                        +        +      
Sbjct: 121 DNTGTLVTGDGYHVLNMNGGTIQIPTDAQ 149


>gi|229069305|ref|ZP_04202595.1| Flagellar hook protein flgE [Bacillus cereus F65185]
 gi|229078936|ref|ZP_04211488.1| Flagellar hook protein flgE [Bacillus cereus Rock4-2]
 gi|228704350|gb|EEL56784.1| Flagellar hook protein flgE [Bacillus cereus Rock4-2]
 gi|228713792|gb|EEL65677.1| Flagellar hook protein flgE [Bacillus cereus F65185]
          Length = 407

 Score = 79.7 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 98/407 (24%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++   +        ++ Q+   ++               + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVPGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G                 I   +     + ++ +                  +A    
Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCLIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     + 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGTSGQNGAGKVR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 74/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  +  +    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                        ++ F+ + +     +   I  DG  +  +          K L     
Sbjct: 225 KETEFKDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCLIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGTSGQNGAGKVRGGAQEGANVD 370


>gi|328543139|ref|YP_004303248.1| hypothetical protein SL003B_1520 [polymorphum gilvum SL003B-26A1]
 gi|326412884|gb|ADZ69947.1| Conserved domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 361

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/392 (9%), Positives = 100/392 (25%), Gaps = 38/392 (9%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +                    + + Y  N +   L    +D      +  N      + I
Sbjct: 8   IDGQTTFATTEYYTRAGDFELNEDGYMVNSAGYYLMGFPLD-----ARTGNAVGDNPEVI 62

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           +  +        S ++   +  +         +       D           I+    I+
Sbjct: 63  QIGSQPLPAQATSEIKYQANLPSYPQTNNADTSVPGSQYLDTSGA-------ITTTSDIA 115

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
               ++      +    T+++     +N E   + T  +  N  +  G            
Sbjct: 116 VADIDDFLNSSISGQSITVYDQNGTPLNVEVRWAQTAANTWNAYYSSGGDA---VTGWYL 172

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            G++          +                     + +     +     +     +  +
Sbjct: 173 IGEVTFDAAGVMDTLTPA----------------GTNTVGAGGASFVIDDLTVAGVNAGD 216

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                   ++      +   S +               ++ G   +I  Y +   ++   
Sbjct: 217 IEFSFKKGSLTQYADPKGLASSVSLNQDGYAAGQVVGLSIDGAGRIIASYSNQQTRSLFE 276

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
            P+A    +  L               + +      +      I  +   +   ++  E 
Sbjct: 277 IPLATFQADQNLRRV-------DGSAFAATPSSGKAAYGNGGTIVANALESSNADIAAEF 329

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           S LI  +Q+Y+ ++K++   D+ML   L  V+
Sbjct: 330 SKLIITQQAYSANSKVVTSADQMLNDALNMVR 361


>gi|330986469|gb|EGH84572.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 586

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/425 (12%), Positives = 116/425 (27%), Gaps = 24/425 (5%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   L  +   LK+          S    I           +
Sbjct: 182 ATYTRAVGRTIQDAGSGAGATALPAADHELKQYFVKTGDSQWSMYVLIDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       +    V N A
Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292

Query: 177 IKFKTAS---KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
               T S    +     LD  D L+ +       S +   ++       D       + +
Sbjct: 293 ANGGTVSLPLNNGPISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQ 352

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
               +  NS+ + +  +         +    + +       +  +         +     
Sbjct: 353 YFVKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQ 412

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 +   +                  + +      +GI+       Q+ +  S    
Sbjct: 413 LTGWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSST 462

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  ++     L   + +  NKN     +A       L   AR+   W E 
Sbjct: 463 HVDGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTES 520

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++Q
Sbjct: 521 ADSGVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQ 580

Query: 474 TLLEG 478
           TL++ 
Sbjct: 581 TLIQS 585



 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A    +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANAQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATALPAADHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +       PI+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGPISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|317050615|ref|YP_004111731.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum
           S5]
 gi|316945699|gb|ADU65175.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum
           S5]
          Length = 262

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 2/172 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       +    + D      +  + T   N +  +   FL + G         +   
Sbjct: 93  LDMTIEKDGYFQIQMPDGTTGYTRNGAFTKNNNGEIVTVEGFLLEPGIQIPDDAVEIYVG 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                 +     +  +       A       L     N   + E + S +  + +  +  
Sbjct: 153 RDGTVSVQIGNQNQMQELGQITTAKFINPAGLESVGGNI--FKETSASGAPQVGIPGEDS 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F  I++ +     V L EE+  +I  +++Y I++K I   D+MLQT  +  +
Sbjct: 211 FGAIAQGFLEQSNVQLVEEMVNMISAQRAYEINSKAITTGDEMLQTATQLKR 262



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/196 (5%), Positives = 39/196 (19%), Gaps = 30/196 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54
           ++     A            +I  N+ N +   + +               +  +     
Sbjct: 1   MIRALWTASTGMMAQQTHIDNISNNLANVNTGGFKKSRVEFQDLMYQTIKPAGASTAAGI 60

Query: 55  QRSENKNM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            R   + +                 +    + +        +  ++           +  
Sbjct: 61  TRPVGEQLGLGVKVAGITKMHTQGSIIQTGNQLDMTIEKDGYFQIQ------MPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIEL 158
                   +       +   +L   +    + V   V    T + ++       +     
Sbjct: 115 TRNGAFTKNNNGEIVTVEGFLLEPGIQIPDDAVEIYVGRDGTVSVQIGNQNQMQELGQIT 174

Query: 159 EISNLRRFLSELTVVN 174
               +     E    N
Sbjct: 175 TAKFINPAGLESVGGN 190


>gi|320529447|ref|ZP_08030535.1| putative flagellar hook protein FlgE [Selenomonas artemidis F0399]
 gi|320138413|gb|EFW30307.1| putative flagellar hook protein FlgE [Selenomonas artemidis F0399]
          Length = 681

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 87/286 (30%), Gaps = 7/286 (2%)

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           D  +  IS         +  + + + T  GT L   V +  +       +VT+  +    
Sbjct: 403 DGTVDSISRTSAYENNGKTVSSVTLNTKAGTALDGLVGKKYSQGDTFYPSVTTMVSVYDS 462

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
            G   S              +           +        V +     +   +G  ++ 
Sbjct: 463 LGAKHSIPVVYTKSANNKWTVSLGSGGDSYTIKEADGTTTTVSLTKTDLEFDTSGAYKSG 522

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
            G            +        I          S +      +     +   +     +
Sbjct: 523 AGTLSLTYSNGAAPQQVTMNMSAITQYSG----TSTIAATSDGNAAGTLSKVEIDSSGVI 578

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +   +      +A  N    L +   N   + E N S +  +   + +  + ++ 
Sbjct: 579 TGVYTNGVRRTEAQIAMAQFNNPSGLTKMGGNL--YQESNNSGTRTISGAADIG-SELTT 635

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           S      V++ ++ S +I  ++ +  ++K+I  +D+ML+TL+   +
Sbjct: 636 SALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 681



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/421 (7%), Positives = 74/421 (17%), Gaps = 25/421 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++       +       +   I  NI N +   +                          
Sbjct: 1   MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGASAPQGTIG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V               +L+ + S     +      +  + +                  
Sbjct: 61  GVNPKQIGLGMSVASTDLLYTNGSVQSTGKNTDIAISRGDGLFVVSRGEQKYYTRNGAFE 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV---QKIRADADKEIELEISNLRR 165
                     S  +  +  +     V      + +      K    A         NL  
Sbjct: 121 FDAAGNLTIPSTGLYVQGYMATDGRVTPAGENTTKINIPAGKSMEAATTATASYTKNLNA 180

Query: 166 FLSELTVVNDAIKFKTASKHD-AHDFLDQRDVLLQKISEIIGI-------STIVRNNNDM 217
             +   V N  +++   +    A+   +++      +S    +            N+   
Sbjct: 181 STTGYEVANTLVRYADGTSETVANYVPEEKGKYSLTLSTGEKVLLDSSAAHPFKANDPVA 240

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                       T       +       T+ S+P+ ++GV     +              
Sbjct: 241 GKALYKSKISNITASATGTVDLKMKVDSTNSSSPVSVNGVTTGIARTGLTTGTYTYGGNY 300

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                +             +  +    D        V                       
Sbjct: 301 TISGKITAATTVTVSGKTYVDLTLDANDNNLTPGTAVTVRVPQPTTFTYKTGDTYTGQLK 360

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I              DG          V +            D    +         N  
Sbjct: 361 ITEVKGNAGATLTTADGNKAKLTAAVTVTSATQEFTRTGTVDDGTVDSISRTSAYENNGK 420

Query: 398 V 398
            
Sbjct: 421 T 421


>gi|304404253|ref|ZP_07385915.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304347231|gb|EFM13063.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 272

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 57/203 (28%), Gaps = 4/203 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            V     + L      +  +      I G+            +  L       +  +  +
Sbjct: 71  GVAIAAIDTLHTAGSAMTTNVPTDVRIDGDGFFAVKTSPEQEVPYLTRAGNFYLDASRQL 130

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVT 399
                        G  +         ++A    +I+   D   +   F   V  +     
Sbjct: 131 VTA-DGAFVLAEGGEPIVLDEGVTSFSIAQDGSIISINADGTAEPTDFKIGVVKVVNPSG 189

Query: 400 LLEYARNS--IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
           L +   N   +                ++     I         V+L  E + +I  ++ 
Sbjct: 190 LEKVGSNMYRVTPNANLEDIEVGSANNAETGTGAIIAGQLEMSNVDLTSEFTEMIIAQRG 249

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  ++++I  +D++LQ ++   +
Sbjct: 250 FQANSRIITTSDEVLQEVVNLKR 272



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 4/54 (7%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTV 52
          +L       +       +   I  NI N +   +     M     + +   VT 
Sbjct: 1  MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQNVAGVTA 54


>gi|227112521|ref|ZP_03826177.1| flagellar hook protein FlgE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 400

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/397 (10%), Positives = 110/397 (27%), Gaps = 8/397 (2%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
           + +S  +  +N+     + + +S     K+ +               V+  +        
Sbjct: 5   QAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDFGNG 64

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
               + +++++ IS    +  + T  +           +  + ++ + + L         
Sbjct: 65  TVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVAGTP 124

Query: 208 STIVRNNNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
             +    + + +   DG  L        I     +S  V + +           +++ + 
Sbjct: 125 PVVQTGADPVPLTVPDGDMLASQTTTASIVANLKSSDAVPATAWATNPGAEGTYNSKTAL 184

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-----NSENVPGLFIAD 321
                   +       V    N     A+    S +            N           
Sbjct: 185 TTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSVSPATYQNAGTLNFAANGALTGHTPFNI 244

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
            +   +       +  +  + Q  +  S+     +           +     +   Y + 
Sbjct: 245 NLTGTNGAANGVFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDGTIEGSYSNG 304

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      +A       L     N   W E   S    + +        +    + +  
Sbjct: 305 QKQPLGQILLASFANPEGLSPEGDN--AWSETASSGQAVVGLAGTGSLGKLIGKSTESSN 362

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 363 VDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 399



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/369 (10%), Positives = 84/369 (22%), Gaps = 9/369 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  + + S  +        F  L++   +  +  N       +   + +          
Sbjct: 62  GNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVA 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               V+    + V         +      A     L+ S+     +  T       +   
Sbjct: 122 GTPPVVQTGADPVPLTVPDGDMLASQTTTASIVANLKSSDAVPATAWATNPGAEGTY--- 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              ++   L   D      +  +       N           +         +NF    +
Sbjct: 179 ---NSKTALTTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSVSPATYQNAGTLNFAANGA 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +  N         ++   +    G ++   +               +    I    
Sbjct: 236 LTGHTPFNINLTGTNGAANGVFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDG 295

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +    N +  P   I          L                    L   GS+ K   
Sbjct: 296 TIEGSYSNGQKQPLGQILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIG 355

Query: 363 WNVKNLAGY 371
            + ++    
Sbjct: 356 KSTESSNVD 364


>gi|218235227|ref|YP_002366439.1| flagellar hook protein FlgE [Bacillus cereus B4264]
 gi|228907387|ref|ZP_04071245.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 200]
 gi|228938867|ref|ZP_04101467.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228964737|ref|ZP_04125844.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228971748|ref|ZP_04132369.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978357|ref|ZP_04138734.1| Flagellar hook protein flgE [Bacillus thuringiensis Bt407]
 gi|218163184|gb|ACK63176.1| flagellar hook protein [Bacillus cereus B4264]
 gi|228781374|gb|EEM29575.1| Flagellar hook protein flgE [Bacillus thuringiensis Bt407]
 gi|228787838|gb|EEM35796.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794987|gb|EEM42486.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228820716|gb|EEM66741.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228852248|gb|EEM97044.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 200]
 gi|326939367|gb|AEA15263.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 407

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 98/407 (24%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++   +        ++ Q+   ++               + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVPGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G                 I   +     + ++ +                  +A    
Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     + 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKVR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407



 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 74/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  +  +    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                        ++ F+ + +     +   I  DG  +  +          K L     
Sbjct: 225 KETEFKDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGASGQNGAGKVRGGAQEGANVD 370


>gi|331017025|gb|EGH97081.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 586

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/423 (11%), Positives = 109/423 (25%), Gaps = 20/423 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  +   LK+          S    +           +
Sbjct: 182 ATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQWSMYVLVDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       ++   + N A
Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S           D     +   + +     + +           +F++      
Sbjct: 293 ASGGGVSLPLIDGSASVLDPADAVMDRPVPV---FDSLDLKTYSDMFANAIFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++       +     + IDG        +      I          +      +     
Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSAGLVSNNGG 409

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L     + +                 + +       GI        Q+ +  S      
Sbjct: 410 GL-----QLNGWTPAMPAERVTGQDRWVSNGAAGSANGIELDFTNLLQHNAASSRSSTYV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NKN     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAE 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 51/225 (22%), Gaps = 7/225 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61
            FN A +  N A+++      NI N+    +       +    +  + + R+   +    
Sbjct: 2   SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A +  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANDKGEIMRGLRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPAFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           A        + +        +    +           V T D   
Sbjct: 179 ADPATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQW 223


>gi|254695093|ref|ZP_05156921.1| flagellar hook protein FlgE [Brucella abortus bv. 3 str. Tulya]
 gi|261215444|ref|ZP_05929725.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya]
 gi|260917051|gb|EEX83912.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya]
          Length = 396

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNMKR 396



 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393


>gi|237796094|ref|YP_002863646.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657]
 gi|229263494|gb|ACQ54527.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657]
          Length = 332

 Score = 79.7 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 85/316 (26%), Gaps = 14/316 (4%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +     +  +   F  Q       +S+ +  +T    N         G  +        
Sbjct: 20  DVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQIGLGVQVAGMYTK 79

Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   T  +     +    F+ G    S+  +    G     +      V   ++  
Sbjct: 80  FTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGDNAGAITGGSMEVSFTRDGS 139

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             + +      S+   + G +     + +  G   +  K      + I       + P  
Sbjct: 140 FTLGKDGSLITSDGLRVMGYAIEGADITVDAGKMKVGFKNADEDPKAITDKLVPLAIPDE 199

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +      S+K       +     ++    D  +       +A       L +  +N    
Sbjct: 200 IEK---GSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYKN 256

Query: 411 LEKNRSDSHDLHMK------SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              +                +   +  +         V+L EE + +I   +++    K+
Sbjct: 257 SANSGEAIIRSGRGVDAANDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGKM 316

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D++LQ L+   +
Sbjct: 317 ITTGDEILQELVNLKR 332



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 29/176 (16%), Gaps = 26/176 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              +      +        F  + +   +D      
Sbjct: 61  GTNPRQIGLGVQVAG---MYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGD 117

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                  +       S                          A E   I  DA K 
Sbjct: 118 TGDNAGAITGGSMEVSFTRDGSFTLGKDGSLITSDGLRVMGYAIEGADITVDAGKM 173


>gi|313896037|ref|ZP_07829591.1| putative flagellar hook protein FlgE [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975462|gb|EFR40923.1| putative flagellar hook protein FlgE [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 676

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/441 (10%), Positives = 121/441 (27%), Gaps = 27/441 (6%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           +  L++ + +    +   + +   ++ + +           +  R  L + +    +   
Sbjct: 239 NGALYSSNISNITAKTGGTVDLQLDVDTTNPSSPLKIGTATTVNRTGLTTGTYAFGDMYN 298

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               I  A  V     T    +      +    +E+ + N   F  ++          + 
Sbjct: 299 ISGSITAATTVAGTPPTVKLTLDTDNNINPGSTVEVVVPNPTSFTYKVGDKYTGQLKVSK 358

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND--------------MVVYTSDGTTLF 228
              +    +   D    +++  + +++  +                     YT  G T+ 
Sbjct: 359 VTGNTGATVTTADGNKAELTSALAVTSATQTYAHTGSAADGLITAITRESTYTYGGKTVS 418

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                      ++     S +          S               +    S    +  
Sbjct: 419 SVTLNTKTGTSVDGLVGKSYAAGDTFYPSFTSLITVYDSLGKSHSVPVVFTKSSNNTWTL 478

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L         +  +              F A G     +              Q   N 
Sbjct: 479 SLGTGGDTYNITEEDGTTTTVALSKTDLKFDATGAYVSGSASLNMTYTNGAAAQQLTMNL 538

Query: 349 SFLRDGGSVSKKFLWNVKNLAGY---------PDLINHYCDSFNKNFIFDPVAGINTNVT 399
           + L      S        N AG            +   Y +   +      +A  N    
Sbjct: 539 AALTQYSGTSTAAGTTDGNAAGTLSKVEIDSAGVITGTYTNGVRQKEAQIAMAQFNNPSG 598

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +   N   + E N S +  +   + +  + ++ S      V++ ++ S +I  ++ + 
Sbjct: 599 LTKMGGNL--YQESNNSGTRTISGAADIG-SELTTSALEMSNVDIADQFSDMIITQRGFQ 655

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K+I  +D+ML+TL+   +
Sbjct: 656 SNSKIITVSDEMLETLINMKR 676



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/435 (7%), Positives = 90/435 (20%), Gaps = 26/435 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++       +       +   I  NI N +   +                          
Sbjct: 1   MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGASAPQGTIG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V               +L+ + S     +      +  + +      N           
Sbjct: 61  GVNPKQIGLGMAVASTDLLYTNGSVQSTGKNTDIAISRGDGLFVVSRGNEKYYTRNGAFE 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR---EVQKIRADADKEIELEISNLRR 165
              +      S  +  +  + N   +      +        K              NL  
Sbjct: 121 FDAQGNLTIPSTGLYVQGYMANNGVISNGGANTTNIQVPAGKSMKATTTTTASFTKNLNA 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                 V N  +++   +      +            E             + +  +   
Sbjct: 181 TTPGYEVANTLVRYADGTTGTVSSYTPT---------ESGSYVLTTDKGKKIRIANTAPA 231

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
               + P    +    S         + +   V ++N  S +  G    + +   +    
Sbjct: 232 QAIGSAPNGALYSSNISNITAKTGGTVDLQLDVDTTNPSSPLKIGTATTVNRTGLTTGTY 291

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               +  ++  +  + +           +      +    ++  +    S T  V  +Y 
Sbjct: 292 AFGDMYNISGSITAATTVAGTPPTVKLTLDTDNNINPGSTVEVVVPNPTSFTYKVGDKYT 351

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                 +  G+          N A     +     +           G+ T +T      
Sbjct: 352 GQLKVSKVTGNTGATVTTADGNKAELTSALAVTSATQTYAHTGSAADGLITAITRESTYT 411

Query: 406 NSIGWLEKNRSDSHD 420
                +     ++  
Sbjct: 412 YGGKTVSSVTLNTKT 426


>gi|218509412|ref|ZP_03507290.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5]
          Length = 196

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 3/182 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +       +   +    +  +  +   D    Q I+       Q  ++ S        +
Sbjct: 18  TAGGAVGTGSLTFDANGKMTSSGAVTINDGVTGQSIAMDFSGLTQLGADFSGTGTPNGQA 77

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
              + +V  + G   +   Y D   K     P+A + +   L   + N        +S  
Sbjct: 78  ATPVKDVT-IDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYS--ANGQSGV 134

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                        I         V+L  EL+ +I+ ++SY  ++K+      ++  L+  
Sbjct: 135 TVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNL 194

Query: 479 VK 480
            +
Sbjct: 195 KR 196


>gi|146341767|ref|YP_001206815.1| flagellar hook protein FlgE [Bradyrhizobium sp. ORS278]
 gi|146194573|emb|CAL78598.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. ORS278]
          Length = 415

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/480 (10%), Positives = 116/480 (24%), Gaps = 65/480 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    + A +  N  S   A I  NI NAD   Y     +        +     S   
Sbjct: 1   MSLSGALSSAISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSSSKAYSSGG 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                  +     +       +  A++                           S     
Sbjct: 61  VSVSGRSNITQQGLLAATTNATDVAIQGSGFFVATS------------------STAAGG 102

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           +           +       +   ++  R DA               S L  +N  +   
Sbjct: 103 ETFYTRNGAFTTDNAGYIENNGYYLEGWRTDASG---------NVVGSGLEPINTKVALT 153

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                                            +       S   T+++++ +    +  
Sbjct: 154 NGGATTKTSLAANL-----------------PADAADNATFSSSMTVYDSLGQAHTMDVT 196

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +   TS ++  +   +  +++    V  G                      +     GS
Sbjct: 197 WTKVATSTASNEWTAQIAPATSSEGTVTSGT-------------------YTIDFNSDGS 237

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            ++    +   +   G   +                T   +     + S           
Sbjct: 238 LNKVSSTSLGIQWKNGAADSTIALSFGTTGGGTDGLTQLSSGSTTPSVSNFSANSDGISF 297

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  ++     +   Y +          VA       L+ ++           S +  
Sbjct: 298 GTLSSISVGKSGLVEATYSNGQTVPIYKIAVATFADPNGLVAHSSGMYT--STATSGNAT 355

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L    +     I  S   +   +   + S +I  +Q+Y+ +++++   +KM  TL+  ++
Sbjct: 356 LQASGENGAGTIYGSELESSTTDTTGQFSNMISAQQAYSAASQVVSAVNKMYDTLISSMR 415


>gi|320329353|gb|EFW85346.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330880525|gb|EGH14674.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 586

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/422 (12%), Positives = 110/422 (26%), Gaps = 18/422 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  S   LK+          S    I           +
Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       +    V N A
Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T S    +  +   D     +   +        ++           +F++      
Sbjct: 293 ANGGTVSLPLNNGSISMLDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            ++      T+      +          S  P   + A +                 A  
Sbjct: 350 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 406

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 +                   + +      +GI+       Q+ +  S       
Sbjct: 407 HSNGL-QLTGWTPAMPAERVTGPEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHVD 465

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +  ++     L   + +  NKN     +A       L   AR+   W E   S
Sbjct: 466 GHAAGQLSSLSVGRDGILRAGFANGMNKNIGQVILASFANPQGLQ--ARSDTRWTESADS 523

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL+
Sbjct: 524 GVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 583

Query: 477 EG 478
           + 
Sbjct: 584 QS 585



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|254720773|ref|ZP_05182584.1| flagellar hook protein FlgE [Brucella sp. 83/13]
 gi|265985831|ref|ZP_06098566.1| flagellar hook protein flgE [Brucella sp. 83/13]
 gi|306840136|ref|ZP_07472921.1| flagellar hook protein FlgE [Brucella sp. NF 2653]
 gi|264664423|gb|EEZ34684.1| flagellar hook protein flgE [Brucella sp. 83/13]
 gi|306404781|gb|EFM61075.1| flagellar hook protein FlgE [Brucella sp. NF 2653]
          Length = 396

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G+      +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGAEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNV--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 IDVLVNLKR 396



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/393 (10%), Positives = 96/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++   I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGAEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +LI+   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGSELIDVLVN 393


>gi|256830176|ref|YP_003158904.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579352|gb|ACU90488.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum
           DSM 4028]
          Length = 260

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 2/110 (1%)

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
              L               PV        L    RN   +++ + S      +  +    
Sbjct: 153 DGRLTCVDKAGAEIAGTDIPVYTFVNPAGLKAMGRNL--YVQTDGSGEAVESVPGENNAG 210

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++ +     V + EE+  +I  +++Y  ++K I   D MLQT  +  +
Sbjct: 211 TLAQGFLEMSNVEIVEEMVNMIVGQRAYEANSKSITTADMMLQTANQLKR 260



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/143 (5%), Positives = 24/143 (16%), Gaps = 28/143 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +              N+ N +   + +                        
Sbjct: 1   MIRALWTSASGMIAQQLNLDVTANNLANVNTTGFKKNRAEFEDLMYQNMKIAGSSNQEGD 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           + +        F  +       D       
Sbjct: 61  RLPVGMQVGMGVRPVSVHKIFTQGDFQNTGNQLDLVIEGDGFFRV-------DRGGEESY 113

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 +   +      +   L 
Sbjct: 114 TRSGAFKLDSDGRIVTDNGHPLQ 136


>gi|323178487|gb|EFZ64065.1| hypothetical protein ECOK1180_3000 [Escherichia coli 1180]
          Length = 226

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 22/241 (9%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               +    ++           +++  +    G + AL   ++ V+    + ++ MA   
Sbjct: 6   SSTIALETNADGTSTMSLTFAGTTSTMTTDTGGSLGALFDYQNDVLTPLTDTINSMASQF 65

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + + +     +    PG  +        +               + S+P         
Sbjct: 66  ADAVNNQLAQGYDLNGNPGEPLFIYDASNADGPLTVNPNITADELAFSSSP--------- 116

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    + +G  D +    +   +      +     +VT+ +   + I  +      
Sbjct: 117 ---------DESGNSDNLQALINISTEPLEIANL----GSVTVGQACSSIISNIGIYSQQ 163

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      +  V++      S+  GV++ EE   LI  +Q Y  + K+I    ++  ++LE
Sbjct: 164 NQTEVDAASNVYSAAQNQQSSVSGVSMDEEAVNLITYQQIYEANLKVISAGAEIFDSVLE 223

Query: 478 G 478
            
Sbjct: 224 M 224


>gi|327254554|gb|EGE66170.1| hypothetical protein ECSTEC7V_0308 [Escherichia coli STEC_7v]
          Length = 400

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/405 (8%), Positives = 107/405 (26%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +    + +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T    +    +     +      ++  + 
Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANLDASDDAIDRTTVPFDPTNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S+ S   +          N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNAADGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A    +  L     +   W++   S +  + +        ++ 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNDDGLQAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GALESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 90/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N             + Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D++  +     T  +                 +NL      +           +S +
Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANLDASDDAIDRTTVPFDPTNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     +      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNAADGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N                 S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNDDGLQAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 ALESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|254785374|ref|YP_003072803.1| flagellar basal body rod protein FlgG [Teredinibacter turnerae
           T7901]
 gi|237683455|gb|ACR10719.1| flagellar basal-body rod protein FlgG [Teredinibacter turnerae
           T7901]
          Length = 261

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 44/169 (26%), Gaps = 2/169 (1%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                +       F      D      +     +    +       L            +
Sbjct: 89  TNQPLDVAIDGRGFFQILQPDGTIGYTRAGQFHLSNQGEIVDPTGLLLQPAITIPDNAES 148

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
           V               +                  L     N   +LE   S +    + 
Sbjct: 149 VTIGTDGTVSARIAGVAAPAILGNIQTVDFVNPAGLQAIGGNL--FLETAASGNPIQGIP 206

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            Q     + +       V++ EE+  +I  +++Y +++K++   D+MLQ
Sbjct: 207 GQNGLGQVEQGMLENSNVDIVEEMVNMITTQRAYEMNSKIVSTADQMLQ 255



 Score = 63.5 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 59/246 (23%), Gaps = 37/246 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++        +  ++  N+ NA    + R   +                    
Sbjct: 1   MHAALYVSKTGLAAQDTKLTTVANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQNTEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  + +        L   +  +      + F  + +          
Sbjct: 61  QLPSGLQLGTGVRVVGTQKQFDY---GSLQVTNQPLDVAIDGRGFFQILQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
                  +   S +    + +  +L   +          +    T +  +  + A A   
Sbjct: 112 IGYTRAGQFHLSNQGEIVDPTGLLLQPAITIPDNAESVTIGTDGTVSARIAGVAAPAILG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
               +  +     +    N  ++   AS +       Q  +   +   +   +  +    
Sbjct: 172 NIQTVDFVNPAGLQAIGGNLFLETA-ASGNPIQGIPGQNGLGQVEQGMLENSNVDIVEEM 230

Query: 216 DMVVYT 221
             ++ T
Sbjct: 231 VNMITT 236


>gi|218896686|ref|YP_002445097.1| flagellar hook protein [Bacillus cereus G9842]
 gi|228900335|ref|ZP_04064565.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 4222]
 gi|218545583|gb|ACK97977.1| flagellar hook protein [Bacillus cereus G9842]
 gi|228859370|gb|EEN03800.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 4222]
          Length = 407

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 99/407 (24%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++   +        ++ Q+   ++        +      + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVQGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G                 I   +     + ++ +                  +A    
Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     + 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKVR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 75/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  +  +    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                   +    ++ F+ + +     +   I  DG  +  +          K L     
Sbjct: 225 KETEFKDVQGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGASGQNGAGKVRGGAQEGANVD 370


>gi|119714998|ref|YP_921963.1| hypothetical protein Noca_0751 [Nocardioides sp. JS614]
 gi|119535659|gb|ABL80276.1| protein of unknown function DUF1078 domain protein [Nocardioides
           sp. JS614]
          Length = 282

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 76/272 (27%), Gaps = 11/272 (4%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T     N   +     +T+F+     +      +      +NPI +   V  +   + + 
Sbjct: 22  TGNNIANANTIGFKSSSTVFQDTLSQMLTSGSAAGGGLGGTNPIQVGLGVQVAATNTNLN 81

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +G  +   +  D         L      +             +           +     
Sbjct: 82  QGANQTTGRPTD---------LMINGDGMFVVMRGNVATYTRAGAFSWDNSGTLVSPGGG 132

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
           ++    +               L +    +     +   L     L   + D        
Sbjct: 133 RVQGYTTFDAAGVHTGGLTDIVLPEDNGATPPLALSSYELGRDGKLTATFEDGSKLVVAQ 192

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A  N  + L      S        S   +L +  +     +S        V+L  E 
Sbjct: 193 VALANFNNPMGLARAGETSFTT--TANSGVAELGVSGEGSRGALSPGSVEMSNVDLAAEF 250

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + LI  ++ +  S+++I  +D++L+ L+   +
Sbjct: 251 TNLILAQRGFQASSRVITTSDQVLEDLVNIKR 282



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/145 (8%), Positives = 29/145 (20%), Gaps = 13/145 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +              NI NA+   +    T+   +   +      +     
Sbjct: 1   MLRSLFAGISGLRVNQTMLDVTGNNIANANTIGFKSSSTVFQDTLSQMLTSGSAAGGGLG 60

Query: 63  FDK--------VLHAHSSAIGQQRLL-----QSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       + A ++ + Q                + M      N +          
Sbjct: 61  GTNPIQVGLGVQVAATNTNLNQGANQTTGRPTDLMINGDGMFVVMRGNVATYTRAGAFSW 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEV 134
                  +     +      +A  V
Sbjct: 121 DNSGTLVSPGGGRVQGYTTFDAAGV 145


>gi|330972414|gb|EGH72480.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 582

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 96/365 (26%), Gaps = 16/365 (4%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174
            +       +  ++   +   +++ + + + K+   +   +  +  + +    +    +N
Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLN 290

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPR 233
                       +    D    LL     ++          +        G  +F++   
Sbjct: 291 --------GGAVSLPLSDAGTSLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQGN 342

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
               ++      T+      +       N  S  P   + A +                +
Sbjct: 343 THELKQYFVKDGTNSWRMHVLIDDRNPQNSASTTP---LTANIVFDSHGTVASLTGSPGL 399

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +                    PG      I +       GI+       Q+ +  S    
Sbjct: 400 SSSNGNQLKLTGWSPV-MAVDPGTSRERWIANGAAGSADGITIDFTHLLQHNAASSRSAA 458

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                        ++     L   + +   K+     +A       L    R+   W   
Sbjct: 459 YVDGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQP--RSDTRWAAT 516

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S   +  +        I         V L +EL  LI+ + +Y  ++K I     ++Q
Sbjct: 517 ADSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQ 576

Query: 474 TLLEG 478
           TL++ 
Sbjct: 577 TLIQS 581



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/438 (5%), Positives = 89/438 (20%), Gaps = 19/438 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +   +    +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+         ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178

Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           A          +               ++ +    +   + +  ++V   +        P
Sbjct: 179 ADPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++ E     +++   N   +  V  +                   +  +      L  
Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLNGGAVSLPL 298

Query: 293 MARV---LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  L    +       +         +    +          E      +  +N  
Sbjct: 299 SDAGTSLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +                      + + +    +        +     + L  ++     
Sbjct: 359 RMHVLIDDRNPQNSASTTPLTANIVFDSHGTVASLTGSPGLSSSNGNQLKLTGWSPVMAV 418

Query: 410 WLEKNRSDSHDLHMKSQV 427
               +R            
Sbjct: 419 DPGTSRERWIANGAAGSA 436


>gi|83589631|ref|YP_429640.1| hypothetical protein Moth_0779 [Moorella thermoacetica ATCC 39073]
 gi|83572545|gb|ABC19097.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 275

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 61/267 (22%), Gaps = 13/267 (4%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +          + +        +       V         +  G                
Sbjct: 9   VSGLRTHQTRMDVIGDNIANVNTVGFKRSAVTFKDVFYQTLRGGSAGDSGGTGMGGTNPQ 68

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR- 345
           Q  L      +    ++    +  +     +      +  D                   
Sbjct: 69  QIGLGVTLGSIDVVHTQGAAASTGNGTDLMIQGDGFFRVSDGTNTYYTRAGAFHFDNEGF 128

Query: 346 -----------SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                      ++ + ++         +    ++     +                +A  
Sbjct: 129 LVTTDGLKVLGTDDNPIQIADMNDPTTMPQSYSIDKMGVVHYVDSTGAALQAGTISIAKF 188

Query: 395 NTNVTLLEYARNSI-GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +    L +  +N            S     +  +    I  S      V+L +E + +I 
Sbjct: 189 SNPSGLEKIGQNLYRATTSSGDPGSELTPGQGSLANTTIIPSALEMSNVDLAQEFTDMII 248

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E+ +  + + I  +D+MLQ L+   +
Sbjct: 249 TERGFQANARTITTSDQMLQELVNLKR 275



 Score = 68.5 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 9/146 (6%), Positives = 25/146 (17%), Gaps = 16/146 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57
           ++       +       +   I  NI N +   + R                    +  +
Sbjct: 1   MMRSLYSGVSGLRTHQTRMDVIGDNIANVNTVGFKRSAVTFKDVFYQTLRGGSAGDSGGT 60

Query: 58  ENKNMFDKVL-----------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                  + +                A              +         N+       
Sbjct: 61  GMGGTNPQQIGLGVTLGSIDVVHTQGAAASTGNGTDLMIQGDGFFRVSDGTNTYYTRAGA 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAE 132
                E +        +  T  +  +
Sbjct: 121 FHFDNEGFLVTTDGLKVLGTDDNPIQ 146


>gi|294852968|ref|ZP_06793640.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026]
 gi|294818623|gb|EFG35623.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026]
          Length = 396

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTDSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGKTVIDNA------------EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L     D A                               +     +   +      
Sbjct: 121 GYYLLDAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTDSELMDVLVN 393


>gi|229102353|ref|ZP_04233061.1| Flagellar hook protein flgE [Bacillus cereus Rock3-28]
 gi|229115194|ref|ZP_04244604.1| Flagellar hook protein flgE [Bacillus cereus Rock1-3]
 gi|228668334|gb|EEL23766.1| Flagellar hook protein flgE [Bacillus cereus Rock1-3]
 gi|228681000|gb|EEL35169.1| Flagellar hook protein flgE [Bacillus cereus Rock3-28]
          Length = 407

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 101/407 (24%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++   +        ++ Q+   ++        +      + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFKQTSEHNYTYKVQMRNDSKKETEFKDVQGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G       +         I+  +     + ++ +                  +A    
Sbjct: 243 AVGNPNPKEQRANIPFDGGSINLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     + 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKVR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 407



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 76/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  +  +    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFKQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                   +    ++ F+ + +     +   I  DG  ++ +          K L     
Sbjct: 225 KETEFKDVQGAGGNMTFDAVGNPNPKEQRANIPFDGGSINLDLSHLTNHPTDKTLSVTDV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGASGQNGAGKVRGGAQEGANVD 370


>gi|257484948|ref|ZP_05638989.1| flagellar basal-body protein, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331011043|gb|EGH91099.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 586

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/422 (12%), Positives = 110/422 (26%), Gaps = 18/422 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  S   LK+          S    I           +
Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       +    V N A
Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
               T S    +  +   D     +   +        ++           +F++      
Sbjct: 293 ANGGTVSLPLNNGSISILDPGDALMDRPVPA---FDPSDLKTYSDMFANAIFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            ++      T+      +          S  P   + A +                 A  
Sbjct: 350 LKQYFVKDGTNSWRIHALIDGRNPQMPDSTDP---LTANIVFDSGGWVQSLTGGPGFAST 406

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 +                   + +      +GI+       Q+ +  S       
Sbjct: 407 HSNGL-QLTGWTPAMPAERVTVPEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSSTHVD 465

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +  ++     L   + +  NKN     +A       L   AR+   W E   S
Sbjct: 466 GHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESADS 523

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL+
Sbjct: 524 GVADYDVPGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLI 583

Query: 477 EG 478
           + 
Sbjct: 584 QS 585



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISILDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|90021853|ref|YP_527680.1| flagellar basal body rod protein FlgG [Saccharophagus degradans
           2-40]
 gi|89951453|gb|ABD81468.1| Flagellar basal-body rod FlgG [Saccharophagus degradans 2-40]
          Length = 261

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 2/181 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +    + +       FI     D      +     +    Q  +    L 
Sbjct: 77  TQKQFTPGSLQVTGQSLDVAIDGRGFIPVLQPDGTVSYTRDGQFHLDGQGQVVNASGLLI 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                       V          +   +          +        L     N   +LE
Sbjct: 137 QPAITIPDNAETVTIGTDGVVSASVRGEPAPVVLGNLQIVDFVNPAGLQAIGGNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +       +     I +       V++ EE+  +I  +++Y +++K++  +D+ML
Sbjct: 195 TASSGNPIQGTPGENGLGSIKQGMLENSNVDIVEEMVNMITTQRAYEMNSKVVSTSDQML 254

Query: 473 Q 473
           Q
Sbjct: 255 Q 255



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/210 (8%), Positives = 45/210 (21%), Gaps = 36/210 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++        +  +I  N+ NA    + R   +                    
Sbjct: 1   MHAALYVSKTGLAAQDTRLTTIANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQTTEET 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          L     ++      + F  + +          
Sbjct: 61  QLPSGLQLGTGVRVVGTQK---QFTPGSLQVTGQSLDVAIDGRGFIPVLQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT---SAREVQKIRADADKE 155
                  +     +    N S  ++   +            T    +  V+   A     
Sbjct: 112 VSYTRDGQFHLDGQGQVVNASGLLIQPAITIPDNAETVTIGTDGVVSASVRGEPAPVVLG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKH 185
               +  +     +    N  ++  ++   
Sbjct: 172 NLQIVDFVNPAGLQAIGGNLFLETASSGNP 201


>gi|293408367|ref|ZP_06652206.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471545|gb|EFF14028.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 400

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +      ++  + 
Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S+ S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        ++ 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D++  +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|296123915|ref|YP_003631693.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016255|gb|ADG69494.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 562

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/558 (8%), Positives = 107/558 (19%), Gaps = 82/558 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENV 50
           M L +  N + N  +        +  NI NA    +                    P   
Sbjct: 1   MGLTSALNTSLNGLSLNEVTIDVLGNNIANAGTNGFKASTVRFQTQLARTLSIGSRPTAT 60

Query: 51  TVVTQRSENKNMFDKVLHA---HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              +   +          +      ++             E     D  +          
Sbjct: 61  DGGSNPRQVGLGATTSAISKDFTQGSLSNSTSASDLAIQGEGFFVMDGSSGRTYTRNGNF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT----SAREVQKIRADADKEIELEISNL 163
             S +SY  N     +    ID+   +V    +       E+   +  +   +   +   
Sbjct: 121 LRSSDSYLVNDQGQFVQGYGIDDEFNIVTTQLSPLRIPLGELNVAQRTSQITMGGALFPA 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHD------FLDQRDVLLQKISEIIGISTIVRNNNDM 217
               ++  +VN  +   + +   A          +        +   +  +         
Sbjct: 181 GDLSTQGALVNSEVLTDSVTGLPATGTALLSNVENAGGTNYFNVGNTLTFAPRKGGRVVE 240

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
               +   T             +   +     N     G    +  G  +          
Sbjct: 241 EQTFTVTATSTLADYVTFMNNTLGIQSGAGIPNDATTGGQPGVTLTGGQIQVVGNTGTQN 300

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                    ++    +      S S     A     V           + + L       
Sbjct: 301 DISITAGDIKSNGAVVPLSFTKSESSNGESAATEFIVYDSLGQTVNVRMTSVLESRGPGA 360

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKN------------------------LAGYPD 373
                   S           +    ++                           +     
Sbjct: 361 TTFRYFLESAQDSRPGVAIGTGLITFDSDGKITGDTTQMFTLERSDTAAVSPMQIEMDLS 420

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYA----------------------------- 404
            I+    + + + +       +   TL  Y                              
Sbjct: 421 QISGISSAQSGSALNLSNQNGSKPGTLQSYVIDEQGLINGIFDNGLIRSLGQVVLARFAN 480

Query: 405 ------RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
                      + E   S    +          I+         ++   L  LI    +Y
Sbjct: 481 SDGLLEAGGTAFREGVSSGVPQIVSPGSFGAGTIASGKIELSNTDIGRNLVDLIVASTNY 540

Query: 459 NISNKLIMFTDKMLQTLL 476
             + ++I     +   LL
Sbjct: 541 RGNARVISSVQDLTNELL 558


>gi|160901817|ref|YP_001567398.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95]
 gi|160359461|gb|ABX31075.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95]
          Length = 261

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 9/217 (4%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                   +   L +          ++  +  +     S    I G+      +      
Sbjct: 54  TPTAQGSTLPTGLYVGHGTRLAATTRIFTLGNIEPTDNSTDIAIMGDGFFQVQMQDGSIA 113

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
              D       +  +  +      P+ +    SV      +        D       +  
Sbjct: 114 YTRDGSFKLDANGRLTTSDGLMVIPNIVIPQNSVGINVSPDGIVSVSLGDGTIQNVGNLT 173

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                +P         L           E   S +    +  Q  F  + + Y     V+
Sbjct: 174 TVRFLNPGGLKPIGNNLYS---------ETPASGNPTEGIPGQDGFGALQQGYLEKSNVD 224

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +E+  +I  +++Y+I++K I   D+ML+T+    +
Sbjct: 225 VVKEMVDMIVAQRAYDINSKTITTADEMLRTVSNVKR 261



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/208 (7%), Positives = 45/208 (21%), Gaps = 15/208 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L     A    N   ++   I  N+ N D   Y ++                       
Sbjct: 1   MLVSLYNAATGMNAEQRKLDIISNNLANVDTTGYKKQRAEFQDLLYSSVKEAGTPTAQGS 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
            +           +           I           + +        + S         
Sbjct: 61  TLPTGLYVGHGTRLAATTRIFTLGNIEPTDNSTDIAIMGDGFFQVQMQDGSIAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +             ++   ++     V  N +        +     + +    +      
Sbjct: 121 KLDANGRLTTSDGLMVIPNIVIPQNSVGINVSPDGIVSVSLGDGTIQNVGNLTTVRFLNP 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRD 195
             L  + + +  +T +  +  + +  +D
Sbjct: 181 GGLKPIGNNLYSETPASGNPTEGIPGQD 208


>gi|2832235|gb|AAC01569.1| flagellar hook [Brucella abortus]
          Length = 396

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKDAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKDAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393


>gi|227328338|ref|ZP_03832362.1| flagellar hook protein FlgE [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 400

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/397 (10%), Positives = 112/397 (28%), Gaps = 8/397 (2%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
           + +S  +  +N+     + + +S     K+ +               V+  +        
Sbjct: 5   QAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDFGNG 64

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
               + +++++ IS    +  + T  +           +  + ++ + + L         
Sbjct: 65  TVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVAGTP 124

Query: 208 STIVRNNNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            T+    + + +   DG  L        I     +S  V + +           +++ + 
Sbjct: 125 PTVQTGADPVPLTVPDGDMLASATTIASIKANLKSSDAVPTNAWATTPGAEGTYNSKTAL 184

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG-----NSENVPGLFIAD 321
                   +       V    N     A+    + +            N           
Sbjct: 185 TTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSITPAVYQNAGALNFASNGALTGHTPFNI 244

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
            +   +       +  +  + Q  +  S+     +           +     +  +Y + 
Sbjct: 245 NLVGTNGAATGTFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDGTIEGNYSNG 304

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      +A       L     N   W E   S    + +        +    + +  
Sbjct: 305 QKQALGQILLASFANPEGLSPEGDN--AWSETASSGQAVVGLAGTGSLGKLIGKSTESSN 362

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           V+L +EL  +I  +++Y  + + I   D +LQTL+  
Sbjct: 363 VDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLVSL 399



 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/369 (10%), Positives = 84/369 (22%), Gaps = 9/369 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     I  NI N+    +               V       S  ++ 
Sbjct: 2   GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASVLQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  + + S  +        F  L++   +  +  N       +   + +          
Sbjct: 62  GNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNGRNIVNAQGMQLTGYPVA 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                +    + V         +      A  +  L+ S+     +  T       +   
Sbjct: 122 GTPPTVQTGADPVPLTVPDGDMLASATTIASIKANLKSSDAVPTNAWATTPGAEGTY--- 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              ++   L   D      +  +       N           T         +NF    +
Sbjct: 179 ---NSKTALTTYDSQGNVHNFTLYFVKTANNTWQTYAKDDSITPAVYQNAGALNFASNGA 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T  +  N   +     ++   +    G ++   +               +    I    
Sbjct: 236 LTGHTPFNINLVGTNGAATGTFTLNLTGSVQQNTEYSYKSPTQNGFAPGSLTGFAINDDG 295

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +    N +      I          L                    L   GS+ K   
Sbjct: 296 TIEGNYSNGQKQALGQILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIG 355

Query: 363 WNVKNLAGY 371
            + ++    
Sbjct: 356 KSTESSNVD 364


>gi|325288803|ref|YP_004264984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964204|gb|ADY54983.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 299

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 68/276 (24%), Gaps = 3/276 (1%)

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
            I+ +                               S    ++   I +   + S +Q  
Sbjct: 25  NIANVNTVGYKYSRTGFSTMLSQSMRGASAPDTADPSTYGGTDGIQIGLGSAIGSIDQIM 84

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                +              F    D    V +            +             +
Sbjct: 85  TQGGSQSTGKNTDLMLQGEGFFMLQDSNGNVYLSRNGNFKTDGAGNLVDASTGFIVQGYE 144

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD-SFNK 384
            D          I +               S        +       D  +   D ++  
Sbjct: 145 NDGSDPWDTLANINLAIGRSDPEGGTNTLSSFEINSQGIIMGTFTDSDSTDGTTDPAYTV 204

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 VA  N    L     N   + E   S    +++  +     IS        VNL
Sbjct: 205 PLYQIAVATCNNPSGLTPVGNNY--YQESPNSGEVKINVAGENGNRSISTGCLEMSNVNL 262

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E+ + +I  ++ +  ++++I  +D MLQ L++  +
Sbjct: 263 SEQFTDMIVTQRGFQANSRVITVSDSMLQELVDLKR 298



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 4/162 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +   N       I  NI N +   Y    T  +         + R  +   
Sbjct: 1   MMRSLYSAISGLKNEQIAMDVIGNNIANVNTVGYKYSRTGFSTMLS----QSMRGASAPD 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +   Q  L  +  ++ ++M+     +      +    +       +     
Sbjct: 57  TADPSTYGGTDGIQIGLGSAIGSIDQIMTQGGSQSTGKNTDLMLQGEGFFMLQDSNGNVY 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           L +      +      + S   + +   +   +    ++N+ 
Sbjct: 117 LSRNGNFKTDGAGNLVDASTGFIVQGYENDGSDPWDTLANIN 158


>gi|168182737|ref|ZP_02617401.1| flagellar hook protein FlgE [Clostridium botulinum Bf]
 gi|182674150|gb|EDT86111.1| flagellar hook protein FlgE [Clostridium botulinum Bf]
          Length = 332

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/316 (10%), Positives = 85/316 (26%), Gaps = 14/316 (4%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +     +  +   F  Q       +S+ +  +T    N         G  +        
Sbjct: 20  DVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQIGLGVQVAGMYTK 79

Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   T  +     +    F+ G    S+  +    G     +      V   ++  
Sbjct: 80  FTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGDNAGAITGGSMEVSFTRDGS 139

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             + +      S+   + G +     + +  G   +  K      + +       + P  
Sbjct: 140 FTLGKDGSLITSDGLRVMGYAIEGADITVDAGKMKVGFKNADEDPKAVTDKLVPLAIPDE 199

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           +      S+K       +     ++    D  +       +A       L +  +N    
Sbjct: 200 IEK---GSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYKN 256

Query: 411 LEKNRSDSHDLHMK------SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              +                +   +  +         V+L EE + +I   +++    K+
Sbjct: 257 SANSGEAIIRSGRGVDAANDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGKM 316

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D++LQ L+   +
Sbjct: 317 ITTGDEILQELVNLKR 332



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 29/176 (16%), Gaps = 26/176 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              +      +        F  + +   +D      
Sbjct: 61  GTNPRQIGLGVQVAG---MYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGD 117

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                  +       S                          A E   I  DA K 
Sbjct: 118 TGDNAGAITGGSMEVSFTRDGSFTLGKDGSLITSDGLRVMGYAIEGADITVDAGKM 173


>gi|237799207|ref|ZP_04587668.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806226|ref|ZP_04592930.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022062|gb|EGI02119.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027339|gb|EGI07394.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 582

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 99/362 (27%), Gaps = 9/362 (2%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E       + +   Q IR  +D E  L+     R ++ + + + +
Sbjct: 229 NPLDPDSVTPLQVRVELKPDGSLSYSDNNQHIRKISDTEFALQDWVPARQVNGVWLASGS 288

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +   T S       +   D     +S  +        ++        G  +F++      
Sbjct: 289 LNGGTVSLPLEEAGVSVLDPADSVMSRSVP---DFDASDLNTYSRMFGNQIFDSQGNMHE 345

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            ++      T+      +          S  P             V       LD     
Sbjct: 346 LKQYFVKDGTNSWRMHVLIDDRNPQQPESKAPLTANIVFDTHGSVVSLTGSTGLDSSKGN 405

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L+         +      PG        +       G++       Q+ +  S       
Sbjct: 406 LLQLTGW----SPAMVASPGTEREHWAPNGAAGSANGMTIDFTNLLQHNAASSRSSAYVD 461

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                     ++     L   + +  NK+     +A       L    R+   W     S
Sbjct: 462 GHSAGELKSLDVGRDGILRAGFTNGMNKDIGQVMLASFANPHGLQP--RSDTRWAATADS 519

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              D  +        I         V L +EL  LI+ + +Y  ++K I     ++QTL+
Sbjct: 520 GVADYDVPGIGTLGSIISGGLEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLI 579

Query: 477 EG 478
           + 
Sbjct: 580 QS 581



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/441 (6%), Positives = 95/441 (21%), Gaps = 13/441 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +    +   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYSSAQLGNGNNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  AAVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF-----LSELTVVND 175
            L     ++  E +         +   + A A   +   I+          L      N 
Sbjct: 122 RLQGYAANDKGEIISGIRTDLQIDTSNVAARATTRVSENINLDSSLPSLSRLPVFDPANP 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           A   + A +      +        ++ +    +   +    ++V   +        P  +
Sbjct: 182 ATYTRVAGRTIQDVGIVPVQAADHELKQYFVKTEDNQWTMHVLVDGRNPLDPDSVTPLQV 241

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E     +++   N   I  +  +          +    + +    +      L     
Sbjct: 242 RVELKPDGSLSYSDNNQHIRKISDTEFALQDWVPARQVNGVWLASGSLNGGTVSLPLEEA 301

Query: 296 VLIG---SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            +     + S       + +       +    +        + E      +  +N   + 
Sbjct: 302 GVSVLDPADSVMSRSVPDFDASDLNTYSRMFGNQIFDSQGNMHELKQYFVKDGTNSWRMH 361

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                        K       + + +    +        +     + L  ++   +    
Sbjct: 362 VLIDDRNPQQPESKAPLTANIVFDTHGSVVSLTGSTGLDSSKGNLLQLTGWSPAMVASPG 421

Query: 413 KNRSDSHDLHMKSQVVFNHIS 433
             R                I 
Sbjct: 422 TEREHWAPNGAAGSANGMTID 442


>gi|17988503|ref|NP_541136.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. 16M]
 gi|256042866|ref|ZP_05445812.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564103|ref|ZP_05834588.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M]
 gi|265989301|ref|ZP_06101858.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1]
 gi|38257707|sp|Q8YDL6|FLGE_BRUME RecName: Full=Flagellar hook protein flgE
 gi|17984295|gb|AAL53400.1| flagellar hook protein flge [Brucella melitensis bv. 1 str. 16M]
 gi|260151746|gb|EEW86839.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M]
 gi|262999970|gb|EEZ12660.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1]
          Length = 396

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNIVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393


>gi|66046706|ref|YP_236547.1| flagellar basal body rod protein:protein of unknown function
           DUF1078:flagellar basal body FlaE [Pseudomonas syringae
           pv. syringae B728a]
 gi|63257413|gb|AAY38509.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078:Flagellar basal body FlaE [Pseudomonas syringae
           pv. syringae B728a]
          Length = 582

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 96/364 (26%), Gaps = 14/364 (3%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174
            +       +  ++   +   +++ + + + K+   +   +  +  + +    +    +N
Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLN 290

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   S   A        V+ + +             +        G  +F++    
Sbjct: 291 GGAVSLPLSDAGASLLDPGDTVMHRPV-------PDFNPADLNTYSRMFGNQIFDSQGNT 343

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              ++      T+      +       N  S  P   + A +                ++
Sbjct: 344 HELKQYFVKDGTNSWRMHVLIDDRNPQNSASTTP---LTANIVFDSHGTVASLTGSPGLS 400

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                               PG      I +       GI+       Q+ +  S     
Sbjct: 401 SSNGNQLKLTGWSPV-MAVDPGTSRERWIANGAAGSADGITIDFTHLLQHNAASSRSAAY 459

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                       ++     L   + +   K+     +A       L    R+   W    
Sbjct: 460 VDGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQP--RSDTRWTATA 517

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   +  +        I         V L +EL  LI+ + +Y  ++K I     ++QT
Sbjct: 518 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 577

Query: 475 LLEG 478
           L++ 
Sbjct: 578 LIQS 581



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/438 (5%), Positives = 89/438 (20%), Gaps = 19/438 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +   +    +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+         ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178

Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           A          +               ++ +    +   + +  ++V   +        P
Sbjct: 179 ADPATFTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
             ++ E     +++   N   +  V  +                   +  +      L  
Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPATQINGAWAANGSLNGGAVSLPL 298

Query: 293 MARV---LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
                  L    +       +         +    +          E      +  +N  
Sbjct: 299 SDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +                      + + +    +        +     + L  ++     
Sbjct: 359 RMHVLIDDRNPQNSASTTPLTANIVFDSHGTVASLTGSPGLSSSNGNQLKLTGWSPVMAV 418

Query: 410 WLEKNRSDSHDLHMKSQV 427
               +R            
Sbjct: 419 DPGTSRERWIANGAAGSA 436


>gi|62317957|ref|YP_223810.1| flagellar hook protein FlgE [Brucella abortus bv. 1 str. 9-941]
 gi|83269934|ref|YP_419225.1| flagellar hook protein FlgE [Brucella melitensis biovar Abortus
           2308]
 gi|189023208|ref|YP_001932949.1| flagellar hook protein FlgE [Brucella abortus S19]
 gi|225686885|ref|YP_002734857.1| flagellar hook protein FlgE [Brucella melitensis ATCC 23457]
 gi|254691611|ref|ZP_05154865.1| flagellar hook protein FlgE [Brucella abortus bv. 6 str. 870]
 gi|254731634|ref|ZP_05190212.1| flagellar hook protein FlgE [Brucella abortus bv. 4 str. 292]
 gi|256112177|ref|ZP_05453098.1| flagellar hook protein FlgE [Brucella melitensis bv. 3 str. Ether]
 gi|256256798|ref|ZP_05462334.1| flagellar hook protein FlgE [Brucella abortus bv. 9 str. C68]
 gi|256261978|ref|ZP_05464510.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9]
 gi|260544142|ref|ZP_05819963.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038]
 gi|260757242|ref|ZP_05869590.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870]
 gi|260759393|ref|ZP_05871741.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292]
 gi|260883046|ref|ZP_05894660.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68]
 gi|265993603|ref|ZP_06106160.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether]
 gi|297250151|ref|ZP_06933852.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196]
 gi|68845076|sp|O52070|FLGE_BRUAB RecName: Full=Flagellar hook protein flgE
 gi|12330680|gb|AAG52877.1| FlgE [Brucella abortus]
 gi|62198150|gb|AAX76449.1| FlgE, flagellar hook protein [Brucella abortus bv. 1 str. 9-941]
 gi|82940208|emb|CAJ13264.1| Flagellar basal body rod protein:Trypsin inhibitor Kunitz [Brucella
           melitensis biovar Abortus 2308]
 gi|189021782|gb|ACD74503.1| Trypsin inhibitor Kunitz [Brucella abortus S19]
 gi|225642990|gb|ACO02903.1| flagellar basal body FlaE domain protein [Brucella melitensis ATCC
           23457]
 gi|260097413|gb|EEW81287.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038]
 gi|260669711|gb|EEX56651.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292]
 gi|260677350|gb|EEX64171.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870]
 gi|260872574|gb|EEX79643.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68]
 gi|262764473|gb|EEZ10505.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether]
 gi|263091462|gb|EEZ15998.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9]
 gi|297174020|gb|EFH33384.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196]
 gi|326411303|gb|ADZ68367.1| flagellar hook protein FlgE [Brucella melitensis M28]
 gi|326554592|gb|ADZ89231.1| flagellar hook protein FlgE [Brucella melitensis M5-90]
          Length = 396

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393


>gi|330961197|gb|EGH61457.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 582

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/364 (9%), Positives = 94/364 (25%), Gaps = 14/364 (3%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174
            +       +  ++   +   +++ +++ ++K+   +   +  +    +          N
Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNSQHLRKVSDNEFALQGWVPAKEVNGAWMANGSAN 290

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             +             LD  D ++ +              +        G  ++++    
Sbjct: 291 GGVVSLPLD-DAGVSLLDPADAVMHRPVP------DFNPADLNTYSRMFGNQIYDSQGNA 343

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              ++      T+      +          S  P                     L    
Sbjct: 344 HELKQYFVKDGTNSWRMHVLIDDRNPQLPESTTPLTANIVFDAHGSVASLTGSPGLSSSN 403

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             L+        +  +       +I     +       GI+       Q+ +  S     
Sbjct: 404 GSLLQLTGWSPTMVVDPGTSRERWIT----NGAAGSADGITIDFTHLLQHNAASSRSSAY 459

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +        ++     L   + +   K+     +A       L    R+   W    
Sbjct: 460 VDGNSAGELKSLDVGRDGILRAGFTNGMTKDIGQVVLASFANPHGLQP--RSDTRWTATA 517

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   +           I         V L +EL  LI+ + +Y  ++K I     ++QT
Sbjct: 518 DSGVAEYDRPGVGTLGSIVSGGLEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 577

Query: 475 LLEG 478
           L++ 
Sbjct: 578 LIQS 581



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/435 (6%), Positives = 92/435 (21%), Gaps = 13/435 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +    +   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGGNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                                    E++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNPLDMRIQGNGFFVVSDQGALAYTRAGAFLKDAENFVVDSDGG 121

Query: 122 ILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF-----LSELTVVND 175
            L         E +         +   + A A   +   I+          L      + 
Sbjct: 122 RLQGYAASDRGEIIRGIRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPTFDPADP 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
           A   +  ++               ++ +    +   R +  ++V   +        P  +
Sbjct: 182 ASYTRVTTRTIQDAGASPVPAADHELKQYFVKTEDNRWSMHVLVDGRNPVDPDSVAPLQV 241

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           + E     +++   N   +  V  +          K      + +         L     
Sbjct: 242 SLELKPDGSLSYSGNSQHLRKVSDNEFALQGWVPAKEVNGAWMANGSANGGVVSLPLDDA 301

Query: 296 VLIG---SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            +     + +       +         +    +          E      +  +N   + 
Sbjct: 302 GVSLLDPADAVMHRPVPDFNPADLNTYSRMFGNQIYDSQGNAHELKQYFVKDGTNSWRMH 361

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                    L           + + +    +        +   + + L  ++   +    
Sbjct: 362 VLIDDRNPQLPESTTPLTANIVFDAHGSVASLTGSPGLSSSNGSLLQLTGWSPTMVVDPG 421

Query: 413 KNRSDSHDLHMKSQV 427
            +R            
Sbjct: 422 TSRERWITNGAAGSA 436


>gi|306845419|ref|ZP_07477993.1| flagellar hook protein FlgE [Brucella sp. BO1]
 gi|306274162|gb|EFM55978.1| flagellar hook protein FlgE [Brucella sp. BO1]
          Length = 396

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +        + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGNFIVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G+      +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGAEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNV--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPRGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/400 (8%), Positives = 93/400 (23%), Gaps = 16/400 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D A   +         +  +  +A        +     ++  +        
Sbjct: 121 GYYLLGAGADEAAGGLTV-----AGLNVVNVNAAALPAEGSTAGNFIVNLPSTDQAPAAG 175

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
               K     + D+ + +       + +       ++  V   +     E     +NF+ 
Sbjct: 176 GYNHKTSLISYNDKGEKI------TLDVYFTKTGADEWNVSVKNAADGAEIGTTVLNFDP 229

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                V+  +  + +      +   +     +         ++     N     +   + 
Sbjct: 230 TTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDY----TISQAVINGQAPSSIKGVD 285

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             ++   +A        +     + ++ +     +       P   S    L        
Sbjct: 286 VGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDVRLGFPRGDGM 345

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
             + +        D+     D       +   + +    +
Sbjct: 346 GKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGS 385


>gi|323191538|gb|EFZ76799.1| flgE [Escherichia coli RN587/1]
          Length = 400

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/405 (9%), Positives = 107/405 (26%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + + D+L   
Sbjct: 60  ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGDYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +    + ++  + 
Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S+ S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 90/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S D L  
Sbjct: 59  SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGDYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D++  +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|301645413|ref|ZP_07245354.1| flagellar hook protein FlgE [Escherichia coli MS 146-1]
 gi|307136858|ref|ZP_07496214.1| flagellar basal body FlaE domain-containing protein [Escherichia
           coli H736]
 gi|331640713|ref|ZP_08341860.1| LfgE [Escherichia coli H736]
 gi|301076297|gb|EFK91103.1| flagellar hook protein FlgE [Escherichia coli MS 146-1]
 gi|315616827|gb|EFU97444.1| flgE [Escherichia coli 3431]
 gi|323181547|gb|EFZ66967.1| flgE [Escherichia coli 1357]
 gi|331040087|gb|EGI12295.1| LfgE [Escherichia coli H736]
          Length = 400

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 106/405 (26%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S+ S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|218703525|ref|YP_002411044.1| lateral flagellar hook FlgE-like protein [Escherichia coli UMN026]
 gi|293403355|ref|ZP_06647446.1| flgE [Escherichia coli FVEC1412]
 gi|300900359|ref|ZP_07118535.1| flagellar hook protein FlgE [Escherichia coli MS 198-1]
 gi|218430622|emb|CAR11488.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli
           UMN026]
 gi|291429208|gb|EFF02228.1| flgE [Escherichia coli FVEC1412]
 gi|300356127|gb|EFJ71997.1| flagellar hook protein FlgE [Escherichia coli MS 198-1]
          Length = 400

 Score = 78.9 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/405 (8%), Positives = 106/405 (26%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +      ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   ++
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSL 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S+ S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        ++ 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDPTNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSLTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSDFSVTTNSANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|251797436|ref|YP_003012167.1| hypothetical protein Pjdr2_3448 [Paenibacillus sp. JDR-2]
 gi|247545062|gb|ACT02081.1| protein of unknown function DUF1078 domain protein [Paenibacillus
           sp. JDR-2]
          Length = 270

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 65/236 (27%), Gaps = 4/236 (1%)

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
               +F D +  +++  +A  +G+   +   +  +                 + +    +
Sbjct: 36  GGRVMFSDILSQTTSGVTASLEGEQGGVNAKQIGLGVTISAIDTIHTPGSAMTTNVPTDL 95

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             + +    +           +      +                DG  +         +
Sbjct: 96  RIDGDGFFAVSAGGDSPTYLTRAGNFTLDGNRQLVNADGMFVLSSDGEPIVLGEDVTSFS 155

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH---DLHMK 424
           +     ++    D   +      V  +     L +   N          D          
Sbjct: 156 IGQDGSILAVTADG-TEAVAQLGVVKVVNPSGLEKVGGNLYRVTANANPDGEFEIVTADD 214

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++    I         V+L  E + +I  ++ +  ++++I  +D++LQ ++   +
Sbjct: 215 PELGTGAIIAGQLEMSNVDLTNEFTEMIVAQRGFQANSRIITTSDEILQEVVNLKR 270



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 53/225 (23%), Gaps = 8/225 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N +   +     M +      T     S     
Sbjct: 1   MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKGGRVMFSDILSQTTSGVTASLEGE- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                        Q  L  +  A+  + +       +    +    D   + S       
Sbjct: 60  ------QGGVNAKQIGLGVTISAIDTIHTPGSAMTTNVPTDLRIDGDGFFAVSAGGDSPT 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 +   +  +    +              +  ++++      + +++        A
Sbjct: 114 YLTRAGNFTLDGNRQLVNADGMFVLSSDGEPIVLGEDVTSF-SIGQDGSILAVTADGTEA 172

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
                   +     L +    +  ++     + +  + T+D   L
Sbjct: 173 VAQLGVVKVVNPSGLEKVGGNLYRVTANANPDGEFEIVTADDPEL 217


>gi|330953723|gb|EGH53983.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7]
          Length = 581

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 96/363 (26%), Gaps = 12/363 (3%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +  + E       + +   Q +R  +D E  L+       ++     N +
Sbjct: 229 NPVDPDSVAPLQVSLELKPDGSLSYSGNDQHLRKLSDTEFALQGWVPAAQVNGAWAANGS 288

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDI 235
           +         +    D    LL     ++          +        G  +F++     
Sbjct: 289 L----NGGAVSLPLSDAGASLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQGNTH 344

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             ++      T+      +       N GS  P   + A +                ++ 
Sbjct: 345 ELKQYFVKDGTNSWRLHVLIDDRNPQNSGSTTP---LTANIVFDSHGAVASLTGSPGLSS 401

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                              PG      I +       GI+       Q+ +  S      
Sbjct: 402 NGDQLKLTGWS--PVRAVDPGTGRERWISNGAAGSADGITIDFTHLLQHNAASSRSAAYV 459

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      ++     L   + +   K+     +A       L    R+   W     
Sbjct: 460 DGHSAGELKSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQP--RSDTRWTATAD 517

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   +  +        I         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 518 SGVAEYDVPGVGTLGGIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTL 577

Query: 476 LEG 478
           ++ 
Sbjct: 578 IQS 580



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/429 (7%), Positives = 100/429 (23%), Gaps = 32/429 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +    A+++      NI N     +       +    +  +   +    +    
Sbjct: 2   SFNTAISGIQAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+     T       ++ D         + +   ++    +    +  T
Sbjct: 122 RLQGYAANDKGEIASGIRT------DLQIDTSNVGARATTRVAETINLDASLPSLARLPT 175

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
               +   +       +Q     +GI+ +   ++++  Y                 ++ +
Sbjct: 176 FDPDNPATYTRVATRTIQD----VGITPVPAADHELKQYF-----------VKTEADQWS 220

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKI---KALLQIRDSVVPIFQNQLDEMARVLI 298
            Y +    NP+  D V          P G +        +R      F  Q    A  + 
Sbjct: 221 MYVLVDGRNPVDPDSVAPLQVSLELKPDGSLSYSGNDQHLRKLSDTEFALQGWVPAAQVN 280

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
           G+++    + G + ++P       + D  + +                +  F        
Sbjct: 281 GAWAANGSLNGGAVSLPLSDAGASLLDPGDTVMHRPVPHFNPADLNTYSRMFGNQIFDSQ 340

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL----EYARNSIGWLEKN 414
                  +                +     +  +       ++        +  G    +
Sbjct: 341 GNTHELKQYFVKDGTNSWRLHVLIDDRNPQNSGSTTPLTANIVFDSHGAVASLTGSPGLS 400

Query: 415 RSDSHDLHM 423
            +       
Sbjct: 401 SNGDQLKLT 409


>gi|170737038|ref|YP_001778298.1| flagellar basal body FlaE domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819226|gb|ACA93808.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 389

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 103/384 (26%), Gaps = 8/384 (2%)

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
             I+ +   L   S N++           A       N     V         ++    S
Sbjct: 8   AGINAINGQLNQISNNIANSGTLGFKSGRANFASSYINAMPSGVSIGSTSQSMDVTGNFS 67

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
              R L            +              ++             +     D  + +
Sbjct: 68  ATGRGLDAAIAGKGFFISRDTDGSMVFSRAGVFNIDKNGNVTDFMSRVVQGYGVDGALGS 127

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSE---SNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
               T         + E + + +        +P   D     +   +A     +     +
Sbjct: 128 LTIPTGSIPAQASSSLEYVGNMSADWTKPTVSPFDKDDPKSYNGISAATVMDSLGREHTV 187

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD---LDNKLCQGIS 335
               V    N++     +   +      ++ ++        A    D     +     I+
Sbjct: 188 TQYFVKDAGNKMQVYYAMDGQNVGNPVELSFDNTGKLVTPTATVQLDLGTPTDAAPMSIA 247

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            +      +    +  ++     K       +LA    +   Y +    +     +A   
Sbjct: 248 ISYAGTTMFGGKQTTDKNRVDGYKAGTVTGVSLAEDGSIEVQYSNGKKLSAGQLAIATFQ 307

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L+    +  GW   + +    +      +   ++        V++  EL  L+  +
Sbjct: 308 NENGLVPV--DGSGWQASSATGEPLIGKPGTGMAGKLAVRAVEQSNVDMTAELVSLMGAQ 365

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           Q+Y  ++K++   ++M++ L++ +
Sbjct: 366 QNYQANSKVLSTENEMMRALMQAL 389



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/390 (8%), Positives = 85/390 (21%), Gaps = 19/390 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----SPENVTVVTQRSENK 60
            FN A    N  + Q   I  NI N+    +               P  V++ +      
Sbjct: 2   SFNIALAGINAINGQLNQISNNIANSGTLGFKSGRANFASSYINAMPSGVSIGSTSQSMD 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   A    +      + F        + D   +                  +   
Sbjct: 62  --VTGNFSATGRGLDAAIAGKGF------FISRDTDGSMVFSRAGVFNIDKNGNVTDFMS 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            ++    +D A        +       I A A   +E   +    +        D    K
Sbjct: 114 RVVQGYGVDGALG------SLTIPTGSIPAQASSSLEYVGNMSADWTKPTVSPFDKDDPK 167

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           + +   A   +D            +  +         +   + G  +  +          
Sbjct: 168 SYNGISAATVMDSLGREHTVTQYFVKDAGNKMQVYYAMDGQNVGNPVELSFDNTGKLVTP 227

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +        P     + ++ +       G  +   + R             +A      
Sbjct: 228 TATVQLDLGTPTDAAPMSIAISYAGTTMFGGKQTTDKNRVDGYKAGTVTGVSLAEDGSIE 287

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               +    ++  +      +    +        + +    P      + +    +V   
Sbjct: 288 VQYSNGKKLSAGQLAIATFQNENGLVPVDGSGWQASSATGEPLIGKPGTGMAGKLAVRAV 347

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
              NV   A    L+    +    + +   
Sbjct: 348 EQSNVDMTAELVSLMGAQQNYQANSKVLST 377


>gi|21748188|emb|CAD41958.1| flagellar hook protein [Pseudomonas fluorescens]
          Length = 181

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 2/182 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           ++      + +         +       +       GI+  +    QY S          
Sbjct: 1   IVTGGVAGNTLTIKDWVPGTVTDGVWKANDATANKDGIAINMGTVTQYNSASYRNPPVTD 60

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      + G   L   + +  +K      +A  N    L         W E   S
Sbjct: 61  GYATGQITGLKIDGSGVLFATFSNQQSKAIGQISLASFNNEQGLQP--AGGTTWKETFAS 118

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                          I  S      VNL  EL  LIK + +Y  + K I     ++QT++
Sbjct: 119 GQPGYDAPESGTLGSIKASSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTII 178

Query: 477 EG 478
           + 
Sbjct: 179 QM 180


>gi|148254600|ref|YP_001239185.1| flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1]
 gi|146406773|gb|ABQ35279.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1]
          Length = 412

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/480 (11%), Positives = 123/480 (25%), Gaps = 68/480 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    + A +  N  S   A I  NI NAD   Y                        
Sbjct: 1   MSLSGALSSAISALNAQSSSLAMISDNISNADTTGYK--------------------TTS 40

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +F++++ A S++        S  +   +         +    ++         + + S 
Sbjct: 41  GLFEQLVTASSNSKAYSSGGVSVSSRTNITQQGLLATTTNATDVAIQGSGFFVATDSTSA 100

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                   + A                     D    +  S L    +++ + N     K
Sbjct: 101 GGETFYTRNGAFTTDNAGYLENNGYYLEGWRTDASGNVVGSGLEPVNTKVALTNGGATTK 160

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
           T+   +        D      S  + +   +  ++ + V  + GTT  E           
Sbjct: 161 TSLAANLPADAASGDT----FSSSMTVYDSLGQSHTLNVTWTKGTTANEWTA-------- 208

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           +    T+    +      ++ N   ++       L    ++        L          
Sbjct: 209 SFAPATASDGTVTSGTYTINFNSDGSLSTVSSTNLGITWNNGAAASSIALSFGTTGGGTD 268

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
              +      +                                   + S           
Sbjct: 269 GLTQLASGSTTP----------------------------------SVSNFSANSDGISF 294

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              +  ++     +   Y +          VA       L+ ++           S +  
Sbjct: 295 GTLSSISVGKNGLVEATYSNGQTVPIYKIAVATFADPNGLVAHSNGMYT--ATATSGNAT 352

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L    +     I  S   +   +   + S +I  +Q+Y+ ++++I   +KM  TL+  ++
Sbjct: 353 LQASGENGAGTIYGSELESSTTDTTGQFSNMISAQQAYSAASQVISAVNKMYDTLISSMR 412


>gi|254698190|ref|ZP_05160018.1| flagellar hook protein FlgE [Brucella abortus bv. 2 str. 86/8/59]
 gi|260762637|ref|ZP_05874969.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59]
 gi|260673058|gb|EEX59879.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59]
          Length = 396

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
           P + +     +  + S        G    ++  S   KG+   L                
Sbjct: 152 PAEGSTAGDFTVNLPSTDQAPAAGGYNHKTSLISYNDKGEKITLDVYFTKT--GADEWNV 209

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +     G       +  +      +   +   +L     Q ++  +  + Q   + +  
Sbjct: 210 SVKNAADGVEIGTTVLNFDPTTGDLVSGGNVAVNLGAYGGQTLNLNLGGSTQRAGDYTIS 269

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   +          ++     ++  Y +   K     P+A + +   +   + N   +L
Sbjct: 270 QAVINGQAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNI--FL 327

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    L          I          ++ +EL+ +I+ ++SY  ++K+     ++
Sbjct: 328 PSAESGDVRLGFPQGDGMGKIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFEL 387

Query: 472 LQTLLEGVK 480
           +  L+   +
Sbjct: 388 MDVLVNLKR 396



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 97/393 (24%), Gaps = 13/393 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S + 
Sbjct: 1   MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLS 119
               +   +    I                        S                  N +
Sbjct: 61  LTDVRYGISDQGGIRSTSSTTDLTIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSA 120

Query: 120 EDILGK------------TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              L                ++                     +     +   +      
Sbjct: 121 GYYLLGAGADEAAGGLTVAGLNVVNVNAAALPAEGSTAGDFTVNLPSTDQAPAAGGYNHK 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           + L   ND  +  T   +      D+ +V ++  ++ + I T V N +        G  +
Sbjct: 181 TSLISYNDKGEKITLDVYFTKTGADEWNVSVKNAADGVEIGTTVLNFDPTTGDLVSGGNV 240

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
              +          +   +++    +     V + Q  +  KG          +V     
Sbjct: 241 AVNLGAYGGQTLNLNLGGSTQRAGDYTISQAVINGQAPSSIKGVDVGNDGAVVAVYENGT 300

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            ++     +   +  ++  +   +  +P     D           G   +  +       
Sbjct: 301 QKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDVRLGFPQGDGMGKIMSGTLEESNADI 360

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              L D     + +  N K      +L++   +
Sbjct: 361 AQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393


>gi|71734109|ref|YP_275562.1| flagellar basal-body protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554662|gb|AAZ33873.1| flagellar basal-body protein, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 586

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/425 (12%), Positives = 117/425 (27%), Gaps = 24/425 (5%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  S   LK+          S    I           +
Sbjct: 182 ATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       +    V N A
Sbjct: 233 NPVDPNSVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPAEEVGGAWVSNGA 292

Query: 177 IKFKTAS---KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
               T S    + +   LD  D L+ +       S +   ++       D       + +
Sbjct: 293 ANGGTVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQ 352

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
               +  NS+ + +  +         +    + +       +  +         +     
Sbjct: 353 YFVKDGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFASTHSNGLQ 412

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                 +   +                  + +      +GI+       Q+ +  S    
Sbjct: 413 LTGWTPAMPAERVTG----------PEKWVPNGAAGSAKGITIDFTNLLQHNAASSRSST 462

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     +  ++     L   + +  NKN     +A       L   AR+   W E 
Sbjct: 463 HVDGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTES 520

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++Q
Sbjct: 521 ADSGVADYDVSGVGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQ 580

Query: 474 TLLEG 478
           TL++ 
Sbjct: 581 TLIQS 585



 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/410 (8%), Positives = 84/410 (20%), Gaps = 14/410 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+                         +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A E  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANEQGEIKRGLRTDLQIDTSNVSARATTRVAENINLDASLPSLARLPVFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT-----LFETVPRDIN 236
           A        + +        +    +           V T D        +    P D N
Sbjct: 179 ADPATYTRAVGRTIQDAGSGAGATAVPASDHELKQYFVKTGDSQWSMYVLIDGRNPVDPN 238

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                  T+    N            +  +  +  ++         V             
Sbjct: 239 SVAPLHVTLEQRPNGSLSYSGNSQHLRKVSDTEFALQGWRPA--EEVGGAWVSNGAANGG 296

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +        I+        +       D  +           +     +     +    
Sbjct: 297 TVSLPLNNGSISMLDPGDALMDRPVPAFDPSDLKTYSDMFANAIFDSQGNQHELKQYFVK 356

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                      + G    +    D    N +FD    + +      +A  
Sbjct: 357 DGTNSWRIHALIDGRNPQMPDSTDPLTANIVFDSGGWVQSLTGGPGFAST 406


>gi|163939559|ref|YP_001644443.1| flagellar hook protein FlgE [Bacillus weihenstephanensis KBAB4]
 gi|163861756|gb|ABY42815.1| protein of unknown function DUF1078 domain protein [Bacillus
           weihenstephanensis KBAB4]
          Length = 407

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/407 (9%), Positives = 97/407 (23%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSQGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++            ++ Q+   ++               + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFTQTSEHNYTYKVQMRNDSKKDTKFEDVPGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G                 I   +     + ++ +                  +A    
Sbjct: 243 AIGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDVDGRAAATVKDCFIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     I 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKIR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 75/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSQ 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  + ++    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFTQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                        ++ F+ + +     +   I  DG  +  +          K L     
Sbjct: 225 KDTKFEDVPGAGGNMTFDAIGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTDV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGASGQNGAGKIRGGAQEGANVD 370


>gi|117926379|ref|YP_866996.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1]
 gi|117610135|gb|ABK45590.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1]
          Length = 263

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            ++++       +     +       F    + D      +  +  +  + Q  +   ++
Sbjct: 77  SVSKMFTQGDYVQTGNELDMAIEGKGFFQIQMPDGSTAYTRDGTFKLDNSGQIVTADGYV 136

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            D G    +   NV         +     +         +A       L    RN     
Sbjct: 137 LDPGLTLPQNATNVAVGPDGTVAVKTPDQADLTQVGQIQLAQFINPAGLNAIGRNLYTES 196

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S +  +    +     + + Y     VN+ EE+  +I  +++Y I++K +   D M
Sbjct: 197 G--ASGAPVVGTAGEDGLGTVQQQYLELSNVNMVEEMVNMIASQRAYEINSKTVQTADDM 254

Query: 472 LQTLLEGVK 480
           L  +    +
Sbjct: 255 LGKVASMKR 263



 Score = 57.0 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/253 (7%), Positives = 53/253 (20%), Gaps = 23/253 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISP 47
           ++     +             I  N+ N +   + R                    + + 
Sbjct: 1   MIRALWTSATGMQAQQTNIDVIANNLANTNTAGFKRSRADFQDLLYQNMRAAGAATSQAG 60

Query: 48  ENVTVVTQ-------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99
             V V  Q        S +K           + +      + F  ++    +  +  + +
Sbjct: 61  NQVPVGIQLGHGVRTVSVSKMFTQGDYVQTGNELDMAIEGKGFFQIQMPDGSTAYTRDGT 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                S    + + Y  +    +                  +  +    +    +  +  
Sbjct: 121 FKLDNSGQIVTADGYVLDPGLTLPQNATNVAVGPDGTVAVKTPDQADLTQVGQIQLAQFI 180

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                  +                     D L        ++S +  +  +V        
Sbjct: 181 NPAGLNAIGRNLYTESGASGAPVVGTAGEDGLGTVQQQYLELSNVNMVEEMVNMIASQRA 240

Query: 220 YTSDGTTLFETVP 232
           Y  +  T+     
Sbjct: 241 YEINSKTVQTADD 253


>gi|327398888|ref|YP_004339757.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411]
 gi|327181517|gb|AEA33698.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411]
          Length = 262

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 52/189 (27%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + +       ++     +       F    + D      +  +  I  N +  ++  + 
Sbjct: 76  AVVKNFSQGNFKETGNPLDIAIAGHGFFQIQMPDGTTAYTRSGAFKIDNNGRIVNSEGYP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         +               +A       L     N   + 
Sbjct: 136 LIPQITIPNDTVAINIGNDGTVSVLEAGQQTPSQIGQIQLAYFVNPAGLKAIGHNL--YQ 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +  +          + +       V++ +E+  +I  +++Y  + K I  +D+M
Sbjct: 194 ETTASGTATVDNPGSNGLGTLEQGVLEMSNVSVVQEMVEMIAAQRAYETNAKAIQTSDEM 253

Query: 472 LQTLLEGVK 480
           LQT     +
Sbjct: 254 LQTANNVKR 262



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 55/240 (22%), Gaps = 29/240 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------------ISPEN 49
           ++     A            +I  N+ N +   + R                    +   
Sbjct: 1   MIRSLWTAATGMEAQQLNVDTIANNLANVNTVGFKRSRADFEDLLYQMVRQPGVASTANT 60

Query: 50  VTVVTQR--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           V     +        +  KN          + +        F  ++           +  
Sbjct: 61  VEPTGIQIGLGVKPAAVVKNFSQGNFKETGNPLDIAIAGHGFFQIQ------MPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEIELE 159
                 +        N     L   +    + V  N     +   ++  +    +  +++
Sbjct: 115 TRSGAFKIDNNGRIVNSEGYPLIPQITIPNDTVAINIGNDGTVSVLEAGQQTPSQIGQIQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++          + ++  +  TAS     D      +   +   +   +  V      ++
Sbjct: 175 LAYFVNPAGLKAIGHNLYQETTASGTATVDNPGSNGLGTLEQGVLEMSNVSVVQEMVEMI 234


>gi|224419257|ref|ZP_03657263.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491]
 gi|253826972|ref|ZP_04869857.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491]
 gi|313142759|ref|ZP_07804952.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491]
 gi|253510378|gb|EES89037.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491]
 gi|313131790|gb|EFR49407.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491]
          Length = 751

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/443 (11%), Positives = 103/443 (23%), Gaps = 15/443 (3%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             V      +  +             +   + +     E           P    + +  
Sbjct: 312 TGVEALTRGDTLILQNTNQLDGDGSNKNIRVTAMNGALEGFETQAGGAAGPFVQTTTVTT 371

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           + +      ++           E++       A +V++   D+             FL  
Sbjct: 372 AFKYNYTLQTDADSTSGQFRTTEDLRALMQQDANKVKEFGGDSAAAAAGMTGPNPTFLQS 431

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQ---------RDVLLQKISEIIGISTIVRNNNDMVVY 220
              V+  +      + +  D              D L   +S      T         + 
Sbjct: 432 NYTVSVKLNSNGQFEINNRDDGVNVANNQQGAAYDNLNIFVSAYNDTLTTTNVLFKNQMK 491

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR- 279
             +   L E      +   +   T +   +     G             G       I  
Sbjct: 492 AMNTGVLVEGGNIT-STAGLRMATYSQTLDIYDSLGNKHDFTIQFTKVAGNQWNWRIIVP 550

Query: 280 --DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
               ++     + + +    +    + + +  N   +               L  G S  
Sbjct: 551 EPAELIGGTAQRPNILEGGSVTFGEQGEILGFNPSTIQFKPNNGAAFPQSIDLDFGTSGG 610

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                   +        G      +           +I  + +          VA     
Sbjct: 611 YDGLTSTAAESQANNIDGDGYTAGMLQDFYFDATGTMIGKFDNGQTLALAQVAVASFANY 670

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L E   N     E   S    +          I  S       +L   L+ LI V++ 
Sbjct: 671 EGLQESGSNLFA--ESPNSGGPTIGTAGSGGRASIQASKLEMSNSDLSRGLTQLIVVQRG 728

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  S+K I  +D++L TLL   +
Sbjct: 729 FQASSKSITTSDQILNTLLGLKQ 751



 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/468 (7%), Positives = 93/468 (19%), Gaps = 41/468 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       +              NI N +   +       +                  
Sbjct: 1   MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRAATIPYAGYG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         +  K      L                  +            +   
Sbjct: 61  GVNDYSVGLGTGIETTTKIFSQGSLQNTDRKADLALEGNGMFVVSNN-----GGFTNMYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ--------------KI 148
                           S  I+   V D ++      + +   V                I
Sbjct: 116 RDGAFSFDAVGNLVTTSGYIVQGWVRDLSKLNCDCGSGNINRVDSTGPIGNITIDPRLTI 175

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            A A + +   I+      +E T     +   +A+ + A       D   +++     + 
Sbjct: 176 PAKATETVTGNINLTSGTKTENTTCPSPLDSTSANNYIAGGLDRLYDTADRQLEVAQDMG 235

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
            +  +  + +                     ++       ++ I I+GV ++ N      
Sbjct: 236 VMFNDAGEAMQLQEGQGIWVSYQTA--TTTPLHINAAAVGASSITINGVTITWNNDPTAT 293

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                   Q+  + +              +   +        S     +   +G  +   
Sbjct: 294 GSSNLLAAQVAINNLKDTTGVEALTRGDTLILQNTNQLDGDGSNKNIRVTAMNGALEGFE 353

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
               G +          +   +     + +       +       L+    +   +    
Sbjct: 354 TQAGGAAGPFVQTTTVTTAFKYNYTLQTDADSTSGQFRTTEDLRALMQQDANKVKEFGGD 413

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
              A          + +++     K  S+            N  +   
Sbjct: 414 SAAAAAGMTGPNPTFLQSNYTVSVKLNSNGQFEINNRDDGVNVANNQQ 461


>gi|323975930|gb|EGB71024.1| fagellar hook-basal body protein [Escherichia coli TW10509]
          Length = 400

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/475 (10%), Positives = 111/475 (23%), Gaps = 77/475 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA                     V  +S        
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANA-------------------GTVGYKSMTTQFSAM 42

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
              + +  +      QS              +      ++   D       +       +
Sbjct: 43  YAGSQAMGVSVAGTAQSISR------GGSLVSTGNALDLAINDDGFFVMCDSAGNISYTR 96

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
                 ++     N S   +Q      D    L+   +     +   +            
Sbjct: 97  AGSFETDKDGYIVNASGAYLQGYP--VDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTA 154

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +     D  D            +      N      S  TT+++++  + +  +  + T 
Sbjct: 155 NFDASDDAIDR----------TTVPFDPTNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTS 204

Query: 246 TSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
            +        DG   +    + +        L                            
Sbjct: 205 DNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLT--------------------------- 237

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                                 D      ++       QY S  S   +  +       N
Sbjct: 238 ----------SPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNSANGYASATQN 287

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              +     +   Y +          +A       L     +   W++   S +  + + 
Sbjct: 288 GVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVP 345

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                  +S     +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 346 GSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400


>gi|167464160|ref|ZP_02329249.1| flagellar basal body rod protein FlgG [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 270

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 65/252 (25%), Gaps = 11/252 (4%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               I F+          S  I        +  G    +  + + +   D++        
Sbjct: 28  NVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQGGVNGQQIGLGSTVASIDTLHTNTGAMN 87

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +   +         +  +SE+        G   +D +                     
Sbjct: 88  TYVKTDMRIEGDGYFAVKTSSESDTYYLTRAGNFKVDAQ---------RRLVTADGMLVL 138

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             DG  +         +      +         +      V  +     L++   N    
Sbjct: 139 NSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIGVVKVTNPSGLMKVGGNLFEL 198

Query: 411 LEKNRSDSHDLHMK--SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                     +     ++     +         V+L  E + +I  ++ +  ++++I  +
Sbjct: 199 TPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEFTEMIVAQRGFQANSRIITTS 258

Query: 469 DKMLQTLLEGVK 480
           D++LQ ++   +
Sbjct: 259 DEVLQEVVNLKR 270



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 8/152 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N +   +     M         +          
Sbjct: 1   MLRSMYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDL-----MSQTIRGATGP 55

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D     +   IG    + S + L     A    N      +    D   +   +   D 
Sbjct: 56  TDTQGGVNGQQIGLGSTVASIDTLHTNTGAM---NTYVKTDMRIEGDGYFAVKTSSESDT 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              T   N +   Q    +A  +  + +D D 
Sbjct: 113 YYLTRAGNFKVDAQRRLVTADGMLVLNSDGDP 144


>gi|28869141|ref|NP_791760.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28852381|gb|AAO55455.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 586

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/423 (11%), Positives = 108/423 (25%), Gaps = 20/423 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  +   LK+          S    +           +
Sbjct: 182 ATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQWSMYVLVDG---------R 232

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       ++   + N A
Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S           D     +   +       + +           +F++      
Sbjct: 293 ASGGAVSLPLIDGSASMLDPADAVMDRPVPA---FDSLDLKTYSDMFANAIFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++       +     + IDG        +      I          +      +     
Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGG 409

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L     + +                 + +       GI        Q+ +  S      
Sbjct: 410 GL-----QLNGWTPAMPAERVTGQDRWVSNGAAGSANGIELDFTNLLQHNAASSRSSTHV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NKN     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAE 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 51/225 (22%), Gaps = 7/225 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61
            FN A +  N A+++      NI N+    +       +    +  + + R+   +    
Sbjct: 2   SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A +  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANDNGEIMRGLRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPAFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           A        + +        +    +           V T D   
Sbjct: 179 ADPATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQW 223


>gi|301166803|emb|CBW26380.1| putative flagellar hook protein [Bacteriovorax marinus SJ]
          Length = 414

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/478 (8%), Positives = 111/478 (23%), Gaps = 65/478 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL    N   N      ++   +  NI NA    +       +                
Sbjct: 1   MSLFQNLNITANTSKQLGRKLEMVGDNINNAGTNGFKGSRAEFSEM-------------- 46

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                        +    +           +  D      +       +S    + + + 
Sbjct: 47  -------------LNTASMGADGGDQVGAGAIIDASKRDLSQGTLAHSNSATDLAIDGTG 93

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                T    A     +F                 +  +   +  +  E    ++ +   
Sbjct: 94  LFAVNTPFGQAYTRDGSFRFDKDG---------YLVTSDGHKVLGYNGEEGQESNTVSPL 144

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             S    +        +   +     I      N           T+ ++     +    
Sbjct: 145 QLSNGSMNASATSNVSMTMNLDAREDIKVFDIQNPRETSSFERSITVLDSKGEQQSLTMY 204

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + T     +    + V    +   AV    +                            
Sbjct: 205 FTKTAQGVWS---YNAVGKGEDLDPAVEGDVLLGTGTA---------------------- 239

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
               D       +          ++ +  +   +++      Q+ ++ S   +  + ++ 
Sbjct: 240 --SFDNKGVLVNDSGLSANVTFKENDEQAINFSLTDKGVATTQFGTDTSVSSNTRNGNEA 297

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                        L   Y +  +       VA       L    +N   ++    S    
Sbjct: 298 GSVVGLGFDKGGSLTLRYDNGKSVQLGKIAVAKFTNEQGLRRVGQNL--FVGNQTSGQVS 355

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           L    +     I  +      V++      ++K ++S++ +++ +   D +L+ ++  
Sbjct: 356 LGKSGEQGRGDIRTNAIEQSNVDITNNFVDMMKTQKSFSANSEAMSAIDGLLKNVIAL 413


>gi|330967091|gb|EGH67351.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 586

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 95/363 (26%), Gaps = 11/363 (3%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       ++   + N A
Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S           D     +   +       + +           +F++      
Sbjct: 293 ASGGAVSLPLIDGAASVLDPADAVMDRPVPA---FDSLDLKTYSDMFANAVFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++       +     + IDG        +      I          +      +     
Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGG 409

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L     + +                 + +       GI        Q+ +  S      
Sbjct: 410 GL-----QLNGWTPAMPAERVTGQDHWVSNGAAGSTSGIELDFTNLLQHNAASSRSSTHV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NK+     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKSIGQVILASFANAQGLQ--ARSDTRWTESAE 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/469 (8%), Positives = 119/469 (25%), Gaps = 22/469 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61
            FN A +  N A+++      NI N+    +       +    +  + + R+   +    
Sbjct: 2   SFNTAISGINAANKRLEVAGNNIANSGTVGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+++   T       ++ D         + +   ++    +    +   
Sbjct: 122 RLQGYAANDKGEIMRGLRT------DLQIDTSNVAARATTRVAENINLDASLPSLARLPA 175

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEKM 240
               D   +       +Q      G   +   +++    +   G   +           +
Sbjct: 176 FDPADPATYTRAVGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDRQWSMYVLVDGRNPV 235

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           +  +V      +        S  G++    KI           P  +     M+      
Sbjct: 236 DPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGAASG 295

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +   P+   + +V     A   + +       +     +      +    +        
Sbjct: 296 GAVSLPLIDGAASVLDPADAVMDRPVPAFDSLDLKTYSDMFANAVFDSQGNQHELKQYFV 355

Query: 361 FLWNVK-----NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
              N        + G    +    +    N +FD    + +          + G L+ N 
Sbjct: 356 KDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGGGLQLNG 415

Query: 416 SDSHDLHMKSQVVFNHISESYS-NTVGVNLQEELSFLIKVEQSYNISNK 463
                   +     + +S   + +T G+ L    + L+  + +   S++
Sbjct: 416 WTPAMPAERVTGQDHWVSNGAAGSTSGIELD--FTNLL--QHN-AASSR 459


>gi|317152827|ref|YP_004120875.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943078|gb|ADU62129.1| flagellar hook-associated protein FlgK [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 670

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 128/364 (35%), Gaps = 31/364 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           L +++N A +   NA     +   NI NAD + Y R +     S               +
Sbjct: 2   LTSLYNLASSALKNAQVSINNASNNIANADTEGYQRTEAAYETSYSISIYGLSVGTGANI 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +  S      +      S+ + ++    ++    + +   +      +  ++   D+  
Sbjct: 62  TSIISLKDQFVEAQYLDASADLNRESAALTYLNQLDSLL--NQAEGGLSETLTDFFDAWN 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           + + +       + ++  AE +V   N++A  ++ + A  + EIE  +S+  + ++++ V
Sbjct: 120 ALTTDPDSLSAREDLLGIAETLVYALNSTADGLETMEAAINTEIEDAVSSANQLIADIAV 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N +I    A+  D +  +  RD ++++++ IIG+ TI + N  + + T +G +L     
Sbjct: 180 ANASI----AASPDNNQLISDRDQMIRELNAIIGVQTIEQENGMVTILTDEGYSL----- 230

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T   + ++ D    S+   ++   G++       + V+  F +   +
Sbjct: 231 ----------VDGTETHSLVYGDATATSALVRASDYDGELAYSGTSSEEVLLKFVSSGAD 280

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                  S         +      L+IA             I            +   + 
Sbjct: 281 GTAQFKASLDGGKTWITDENGETMLYIAGDEAAPVEIAGIEIWFEGGSADHAVGDTYTIV 340

Query: 353 DGGS 356
               
Sbjct: 341 PKSG 344



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 94/315 (29%)

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                      A+  +T+    A  F  + DV+   +  +  +S  +    + V  T  G
Sbjct: 356 NITPMTDSSGTAVNGRTSGGSLAGLFNVRDDVVTPTLDSLNDLSESIIWEVNAVHSTGAG 415

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
               ET+      E   +    S  +          S            + +   D    
Sbjct: 416 LDHHETLTGSYTVEDSGALLSNSGLHFADNVTAGDFSLVTYDSDGNVSTSAIISFDPATD 475

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              + + E+     G  +     +G      G      I      L   +      +   
Sbjct: 476 SLDDLMAEINTAFGGELTASINASGQFVLSAGSDTGFEIASDSTGLMAALGVNTFFSGID 535

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +        + +         G     N+   +         V   + N +L  Y 
Sbjct: 536 ADTIAIASAVAEDTSRINAGAVGSDGLVSSGNNDIATLLAALSDSKVGVGDKNTSLTSYL 595

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            + +  +    S +      +Q   ++  +  ++   VN+ EEL  L+K +Q++  + ++
Sbjct: 596 ASLVAGVGAAASSAELKLTYAQTSVDYYYQQQASASEVNVDEELINLLKYQQAFKAAAEI 655

Query: 465 IMFTDKMLQTLLEGV 479
           +  T  M+ T+L+ V
Sbjct: 656 MTVTRTMMDTVLDIV 670


>gi|229166594|ref|ZP_04294346.1| Flagellar hook protein flgE [Bacillus cereus AH621]
 gi|228616848|gb|EEK73921.1| Flagellar hook protein flgE [Bacillus cereus AH621]
          Length = 407

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/407 (9%), Positives = 97/407 (23%), Gaps = 4/407 (0%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +           A   
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDG-KYAGTN 62

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
            ++     +    +   +D  I L     +  +                +          
Sbjct: 63  PKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFGIS 122

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSD-GTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +E   +     N     V  S     L   +   I   + +  T+        
Sbjct: 123 SDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSQGTIKGNIPTGE 182

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
                      +A     ++            ++ Q+   ++               + +
Sbjct: 183 KQITQDLPVYDNAGNTWTMRVEFTQTSEHNYTYKVQMRNDSKKDTKFEDVPGAGGNMTFD 242

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
             G                 I   +     + ++ +                  +A    
Sbjct: 243 AVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTNVDGRAAATVKDCFIADGGY 302

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
           ++  Y D   K+     VA       L++       +   N +    L    Q     I 
Sbjct: 303 VMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKIR 360

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                   V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 361 GGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 75/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDL-SGIPGPLQIPMGTAIGGIRTSQ 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             ++  +               +  +          +  + ++    +   +        
Sbjct: 172 GTIKGNIPTGEKQITQDLPVYDNAGNTW-------TMRVEFTQTSEHNYTYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                        ++ F+ + +     +   I  DG  +  +          K L     
Sbjct: 225 KDTKFEDVPGAGGNMTFDAVGNPNPKEQGANIPFDGGSIKLDLSHLTNHPTDKTLSVTNV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D    ++  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKSAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGASGQNGAGKIRGGAQEGANVD 370


>gi|213967581|ref|ZP_03395729.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1]
 gi|301385714|ref|ZP_07234132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13]
 gi|302060074|ref|ZP_07251615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40]
 gi|302134833|ref|ZP_07260823.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213927882|gb|EEB61429.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1]
          Length = 586

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 112/423 (26%), Gaps = 20/423 (4%)

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +       + +    S  G   +  +   LK+          S    +            
Sbjct: 182 ATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQWSMYVLVDGRNP------V 235

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + +        ++       +++ +++ ++KI   +   +       +          N 
Sbjct: 236 DPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDIEFALQGWRPAHEVNGAWMSNGAANG 295

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                      A   LD  D ++ +         +   ++       D       + +  
Sbjct: 296 GAVSLPLIDGSA-SVLDPADAVMDRPVPAFDSLDLKTYSDMFANAIFDSQGNQHELKQYF 354

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             +  NS+ +    +         +    + +      ++  +  S   +  N       
Sbjct: 355 VKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSAGLVSNNGGGLQLN 414

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +   +     +            + +       GI        Q+ +  S      
Sbjct: 415 GWTPAMPAERVTGQDR----------WVSNGAAGSANGIELDFTNLLQHNAASSRSSTYV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L   + +  NKN     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQ--ARSDTRWTESAE 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 51/225 (22%), Gaps = 7/225 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61
            FN A +  N A+++      NI N+    +       +    +  + + R+   +    
Sbjct: 2   SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L       A +  +       ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYA---ANDKGEIMRGLRTDLQIDTSNVAARATTRVAENINLDASLPSLARLPAFDP 178

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           A        + +        +    +           V T D   
Sbjct: 179 ADPATYTRAIGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDSQW 223


>gi|254456854|ref|ZP_05070282.1| conserved domain protein [Campylobacterales bacterium GD 1]
 gi|207085646|gb|EDZ62930.1| conserved domain protein [Campylobacterales bacterium GD 1]
          Length = 419

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/478 (8%), Positives = 112/478 (23%), Gaps = 64/478 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F    +   +       I  N+ N     +   +T                   N+
Sbjct: 2   MTQAFYTGISGLKSNQGGINIITDNLANISTVGFRGYNTEFASM-----------FEDNL 50

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                ++ +S+     +      +          + S    ++ + +             
Sbjct: 51  NTTSKNSATSSTIGAGVKLQAATMNRDQGVIQISDKS--TDLAIVGNGWFGIQGEKDTMY 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK-T 181
                     +           +  + A+   ++   I +  +     +          T
Sbjct: 109 TRGGNFTFDRDSDLITQDGFYVLGTMGANIQDDVLTGILDEVKLGDVKSQEKLRFPQTLT 168

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                +       ++     +  IG   I   NN   +  S    + + +P         
Sbjct: 169 YPSVASTTAKFLGNIGTDDEARTIGAGVIDGLNNRNHLRLSFTKVVPQVLPGSQWDVTAT 228

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           + T         +DG  +   Q          AL+    + +                  
Sbjct: 229 TQT---------LDGTTIYDTQTGGASFDSRGALISTTLTSIDN---------------- 263

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                                     + +   +           + P         ++  
Sbjct: 264 ------------------------NGSPVAIDLGSGFDGVVAISNIPISASSLADGTQGG 299

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                ++    ++I  + +    +     V        L   +       + + S     
Sbjct: 300 DLEGYSVNKNAEVIATFTNGLQSSVGKIAVYHFRNEQGLDRASGARFFEGKNSGSPLFYQ 359

Query: 422 HMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               + +    I   +     V +   L+ LI  +++Y+ ++K I   D+M+Q  L+ 
Sbjct: 360 DSSGENIIGTDILNFHLEGSNVQMTTGLTDLIIFQRAYDANSKSITTADQMMQKALQM 417


>gi|228964721|ref|ZP_04125828.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794971|gb|EEM42470.1| Flagellar hook-associated protein FlgK [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 139

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 37/105 (35%)

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                                 ++  +     I  +  ++S  +        +   I + 
Sbjct: 35  MKISAETANKLAAITDGDYKEGLSYKQALDQFIVRVASDKSAVNAYQKIHGDLLEGIQQE 94

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 95  KMSVEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 139


>gi|226944492|ref|YP_002799565.1| flagellar basal body rod protein [Azotobacter vinelandii DJ]
 gi|226719419|gb|ACO78590.1| Flagellar basal body rod protein [Azotobacter vinelandii DJ]
          Length = 383

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 65/241 (26%), Gaps = 2/241 (0%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             S  +T+  +    +    ++        G    L                 +   +  
Sbjct: 145 SGSDVITAAFDATDENTYSYANTATVFDSLGNSHELTLYFTKTGTNEWAVNAALDGAVSA 204

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S ++      +         +      +          +  + Q+ ++            
Sbjct: 205 SAAQALEFTTSGLLDGYTPTSFDFAMTNGAADISFELDLTGSTQFGNDFEVSSLDQDGYT 264

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                   +    +++ +Y +  +       +A   +   L     N   W+E   S   
Sbjct: 265 AGSLVGFTIEENGNVVGNYSNEQSLVVGQIQLATFRSPEGLQPVGDN--AWVETAASGQP 322

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +       F  +         V+L +EL  LI  ++++  + + +    ++L+  +   
Sbjct: 323 LVGTAGNGQFGSLESGVVEASNVDLTKELVNLIIAQRNFQANAQSVSTQSEVLEQAVNLG 382

Query: 480 K 480
           +
Sbjct: 383 R 383



 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 73/320 (22%), Gaps = 16/320 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N AS     +  NI N+    +    T       +  V          +N 
Sbjct: 2   GFSQALSGLNAASSNLNVVSNNIANSQTVGFKSSTTQFADVYASSRVGLGVQVAGVVQNF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLS 119
               L     ++        F   ++        N   T        + +       N +
Sbjct: 62  TSGNLETTDRSLDLAISGSGFFRFEQAGQVVYSRNGQLTLTPEGYLQNAQGARLLGSNGA 121

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN--DAI 177
             I    +                    I A  D   E   S         ++ N  +  
Sbjct: 122 IQIPADGLQAQPTTEFDATLNLDSGSDVITAAFDATDENTYSYANTATVFDSLGNSHELT 181

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
            + T +  +        D  +   +      T             DG T         N 
Sbjct: 182 LYFTKTGTNEWAVNAALDGAVSASAAQALEFTTSG--------LLDGYTPTSFDFAMTNG 233

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               S+ +    +  F +   VSS        G +       +  V    +    +    
Sbjct: 234 AADISFELDLTGSTQFGNDFEVSSLDQDGYTAGSLVGFTIEENGNVVGNYSNEQSLVVGQ 293

Query: 298 IGSFSEKDPIAGNSENVPGL 317
           I   + + P           
Sbjct: 294 IQLATFRSPEGLQPVGDNAW 313


>gi|331666546|ref|ZP_08367420.1| LfgE [Escherichia coli TA271]
 gi|331065770|gb|EGI37654.1| LfgE [Escherichia coli TA271]
          Length = 400

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|322382385|ref|ZP_08056292.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153738|gb|EFX46113.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 266

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 65/252 (25%), Gaps = 11/252 (4%)

Query: 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
               I F+          S  I        +  G    +  + + +   D++        
Sbjct: 24  NVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQGGVNGQQIGLGSTVASIDTLHTNTGAMN 83

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
             +   +         +  +SE+        G   +D +                     
Sbjct: 84  TYVKTDMRIEGDGYFAVKTSSESDTYYLTRAGNFKVDAQ---------RRLVTADGMLVL 134

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
             DG  +         +      +         +      V  +     L++   N    
Sbjct: 135 NSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIGVVKVTNPSGLMKVGGNLFEL 194

Query: 411 LEKNRSDSHDLHMK--SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                     +     ++     +         V+L  E + +I  ++ +  ++++I  +
Sbjct: 195 TPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEFTEMIVAQRGFQANSRIITTS 254

Query: 469 DKMLQTLLEGVK 480
           D++LQ ++   +
Sbjct: 255 DEVLQEVVNLKR 266



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 36/148 (24%), Gaps = 8/148 (5%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
                +       +   I  NI N +   +     M         +           D  
Sbjct: 1   MYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDL-----MSQTIRGATGPTDTQ 55

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
              +   IG    + S + L     A    N      +    D   +   +   D    T
Sbjct: 56  GGVNGQQIGLGSTVASIDTLHTNTGAM---NTYVKTDMRIEGDGYFAVKTSSESDTYYLT 112

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADK 154
              N +   Q    +A  +  + +D D 
Sbjct: 113 RAGNFKVDAQRRLVTADGMLVLNSDGDP 140


>gi|331671804|ref|ZP_08372600.1| LfgE [Escherichia coli TA280]
 gi|331070793|gb|EGI42152.1| LfgE [Escherichia coli TA280]
          Length = 400

 Score = 78.1 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +    + +    +S     +          + + D+L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGDYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDAGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +          N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        ++ 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLTS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 91/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S D L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGDYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+A  +     T  +                 +N     + +           +S +
Sbjct: 119 YPVDDAGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     +      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLTSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|331007439|ref|ZP_08330616.1| Flagellar basal-body rod protein flgG [gamma proteobacterium
           IMCC1989]
 gi|330418746|gb|EGG93235.1| Flagellar basal-body rod protein flgG [gamma proteobacterium
           IMCC1989]
          Length = 261

 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 51/182 (28%), Gaps = 2/182 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +   G   +      +       F    +   +    +     +  N    +   FL
Sbjct: 76  ATQKQFTGGSLQVTEQPLDLAINNRGFFQIQMPSGETAYTRNGQFHLNSNGDIVNASGFL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            +      +   N+          +   ++  +      +        L     N     
Sbjct: 136 LEPSISIPENTNNITISQDGIVSASILGEATPQELGQITITDFVNPAGLQALGGNVFAQ- 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S         +     I +       V++ EE+  +I  +++Y +++K++   D+M
Sbjct: 195 -TAASGDPQTGTAGESGLGSIIQGSLENSNVDIVEEMVNMITTQRAYEMNSKVVSTADQM 253

Query: 472 LQ 473
           LQ
Sbjct: 254 LQ 255



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 55/245 (22%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +   +Q  SI  N+ NA    + R                        
Sbjct: 1   MNPALYVSKTGLSAQDRQLTSISNNLANASTIGFKRDRVNFEDLLYQIQRQPGGQSSQNT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          L      +      + F  ++           
Sbjct: 61  QLPSGLQLGTGVRVVATQK---QFTGGSLQVTEQPLDLAINNRGFFQIQ------MPSGE 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE--I 156
           +      +   +      N S  +L  ++           +        I  +A  +   
Sbjct: 112 TAYTRNGQFHLNSNGDIVNASGFLLEPSISIPENTNNITISQDGIVSASILGEATPQELG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           ++ I++         +  +      AS         +  +       +   +  +     
Sbjct: 172 QITITDFVNPAGLQALGGNVFAQTAASGDPQTGTAGESGLGSIIQGSLENSNVDIVEEMV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMITT 236


>gi|330943208|gb|EGH45615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 565

 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/364 (9%), Positives = 94/364 (25%), Gaps = 15/364 (4%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174
            +       +  ++   +   +++ + + + K+   +   +  +  + +    +    +N
Sbjct: 215 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGSLN 274

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +   A        V+ + +             +        G  +F++    
Sbjct: 275 GGAVLLPLNDAGASLLDPGDTVMHRPV-------PDFNPADLNTYSRMFGNQIFDSQGNT 327

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              ++      T+      +       N  S  P   + A +                ++
Sbjct: 328 HELKQYFVKDGTNSWRMHALIDDRNPQNSASTTP---LTANIVFDSHGAVASLTGSPGLS 384

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                            +          I +       GI+       Q+ +  S     
Sbjct: 385 SNGTQLKLTGWSPVMAVDPGTARE--RWISNGAAGSADGITIDFTRLLQHNATSSRSAAY 442

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     L   + +   K+     +A       L    R+   W    
Sbjct: 443 VDGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP--RSDTRWTATA 500

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   +  +        I         V L +EL  LI+ + +Y  ++K I     ++QT
Sbjct: 501 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 560

Query: 475 LLEG 478
           L++ 
Sbjct: 561 LIQS 564



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/432 (5%), Positives = 87/432 (20%), Gaps = 18/432 (4%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80
                 NI N     +       +    +  +   +    +         +   G+  + 
Sbjct: 1   MEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRLASVQQNFNQGETVIS 60

Query: 81  QS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                                +              ++  +     L     ++  E+  
Sbjct: 61  SGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGGRLQGYAANDKGEIAS 120

Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
                  ++Q   ++        ++      + L  +     F             +   
Sbjct: 121 GIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPDDPATYTRVATRTIQ 177

Query: 197 ---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
                       ++ +    +   + +  ++V   +        P  ++ E     +++ 
Sbjct: 178 DVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAPLQVSLELKPDGSLSY 237

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV--PIFQNQLDEMARVLIGSFSEKD 305
             N   +  V  +                   +  +        L++    L+       
Sbjct: 238 SGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGSLNGGAVLLPLNDAGASLLDPGDTVM 297

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  N   L     +        QG +  +          S+        +    + 
Sbjct: 298 HRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSWRMHALIDDRNPQNSA 357

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                  +++     +         ++   T + L  ++          R          
Sbjct: 358 STTPLTANIVFDSHGAVASLTGSPGLSSNGTQLKLTGWSPVMAVDPGTARERWISNGAAG 417

Query: 426 QVVFNHISESYS 437
                 I  +  
Sbjct: 418 SADGITIDFTRL 429


>gi|300936126|ref|ZP_07151065.1| flagellar hook protein FlgE [Escherichia coli MS 21-1]
 gi|300458704|gb|EFK22197.1| flagellar hook protein FlgE [Escherichia coli MS 21-1]
          Length = 400

 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +          N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     +      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|226327736|ref|ZP_03803254.1| hypothetical protein PROPEN_01609 [Proteus penneri ATCC 35198]
 gi|225203440|gb|EEG85794.1| hypothetical protein PROPEN_01609 [Proteus penneri ATCC 35198]
          Length = 87

 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 34/85 (40%)

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
            I+   T+     + I  +    + +         +   I E   +  GVNL EE   + 
Sbjct: 1   MIDGKTTIAGGYGSLISMVGNKVNTAQVDFDAQVSITKSIVEQQQSVSGVNLDEEYGEMY 60

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLE 477
           ++++ Y  + K+I   + M   +++
Sbjct: 61  RIQEYYMANAKVIQTANSMFDAIMQ 85


>gi|331645418|ref|ZP_08346522.1| LfgE [Escherichia coli M605]
 gi|331045580|gb|EGI17706.1| LfgE [Escherichia coli M605]
          Length = 400

 Score = 77.8 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 103/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +          N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N     + +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     +      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|260853466|ref|YP_003227357.1| putative lateral flagellar hook protein [Escherichia coli O26:H11
           str. 11368]
 gi|260866413|ref|YP_003232815.1| putative lateral flagellar hook protein [Escherichia coli O111:H-
           str. 11128]
 gi|257752115|dbj|BAI23617.1| predicted lateral flagellar hook protein [Escherichia coli O26:H11
           str. 11368]
 gi|257762769|dbj|BAI34264.1| predicted lateral flagellar hook protein [Escherichia coli O111:H-
           str. 11128]
 gi|323158103|gb|EFZ44202.1| hypothetical protein ECEPECA14_0101 [Escherichia coli EPECa14]
 gi|323178494|gb|EFZ64072.1| hypothetical protein ECOK1180_3007 [Escherichia coli 1180]
          Length = 400

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +    + +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPVDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFNASDEAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPVDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|218778846|ref|YP_002430164.1| flagellar basal body rod protein FlgG [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760230|gb|ACL02696.1| Flagellar basal-body rod protein FlgG [Desulfatibacillum
           alkenivorans AK-01]
          Length = 260

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I    +      + +          +   + ++          +  Y +  +  R     
Sbjct: 80  IFVQGDYSQTGNDLDWAIEGNGFFKVLSNNEEVYTRAGSFKIDSEGYITTAAGERLQPEF 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +      + ++     L      +         +        L    RN   +     S 
Sbjct: 140 AVPADAVLISVDSGGKLTAFGPANEEVATYDITLYDFANPAGLYSMGRNL--YKTTEASG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                      F  IS+ +     VN+ EE+  +I  +++Y  ++K I   D MLQ    
Sbjct: 198 EEVEGTPGDEGFGTISQGFLEMSNVNVVEEMVTMIIAQRAYEANSKAIQTADSMLQIANN 257

Query: 478 GVK 480
             +
Sbjct: 258 VKR 260



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/165 (7%), Positives = 30/165 (18%), Gaps = 34/165 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A             +  N+ N +   + R                        
Sbjct: 1   MLRGLWTAATGMEAQQLNIDVVSNNLANINTTAFKRSRPDFQDLMYQTIRVAGATTTGGT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                            +               + +        F  +          N 
Sbjct: 61  QLPTGLQVGMGSKPTGVQKI---FVQGDYSQTGNDLDWAIEGNGFFKVLSN-------NE 110

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                    +   E Y    + + L       A+ V+ + ++  +
Sbjct: 111 EVYTRAGSFKIDSEGYITTAAGERLQPEFAVPADAVLISVDSGGK 155


>gi|256020228|ref|ZP_05434093.1| flagellar basal body FlaE domain-containing protein [Shigella sp.
           D9]
 gi|332281390|ref|ZP_08393803.1| lateral flagellar hook protein [Shigella sp. D9]
 gi|332103742|gb|EGJ07088.1| lateral flagellar hook protein [Shigella sp. D9]
          Length = 400

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|218663526|ref|ZP_03519456.1| flagellar hook protein FlgE [Rhizobium etli IE4771]
          Length = 384

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 99/384 (25%), Gaps = 3/384 (0%)

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           ++S  +    ++ S+        +     +  D A      F     +   +   A    
Sbjct: 4   SSSGNYNSGGVQTSVRQAISQQGDISYTTSAYDLAISGDGFFIVEGADGTPVLTRAGDFS 63

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                NL        +         A   +  D L   +V    +S I   S     N +
Sbjct: 64  VDSDGNLVNSAGYTLMGYSYDSGVPAVVVNGFDGLVPVNVAQSGLSAIASTSAYFSGNLN 123

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
                   TT   +       +     ++ +  +            +             
Sbjct: 124 SEATVVTDTTTLPSANTSAVTDDTQKMSLVAYDSLGATVQYDYYFTKTGVTTDASGAVTG 183

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
              +  V    +           S S       + +    L  A     +D    + I+ 
Sbjct: 184 STWEVAVYRNADAATGGTTSFPYSSSAVSVATLSFDANGQLTSATDTDIVDPVTAKTITM 243

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                 Q  S+ S              +  ++     +   Y +   K     P+A + +
Sbjct: 244 DYSDFTQLASDFSATGS-ADGQAASSVSSVSIDTDGVVSVSYANGTTKALYQIPLANVAS 302

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L   + N        +S               I      +  V+L  EL+ +I+ ++
Sbjct: 303 PDNLTLLSGNVYT--ANGQSGVTVTGFPQTNGLGSIQSGALESSNVDLAGELTEMIEAQR 360

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           SY  ++K+      ++  L+   +
Sbjct: 361 SYTANSKVFQTGSDIMDVLVNLKR 384


>gi|168180921|ref|ZP_02615585.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916]
 gi|182668204|gb|EDT80183.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916]
 gi|322806984|emb|CBZ04554.1| flagellar hook protein FlgE [Clostridium botulinum H04402 065]
          Length = 334

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 82/317 (25%), Gaps = 14/317 (4%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  +   F  Q       +S+ +  +T    N         G  L   V    
Sbjct: 20  DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVG--LGVQVAGIF 77

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                 +   T  +  + IDG                 +     +  +     ++     
Sbjct: 78  TKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGDNEGAINGGTMEVSFTKD 137

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                  +   I  +   + G  I D     D    +        +   +++ + L    
Sbjct: 138 GSFNLDEDGSLITSDGLRIMGYAINDAAITKDATTGKIKVGFKNADEDPKADATKLVPLA 197

Query: 356 S------VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                   S+K       +     ++    D  +       +A       L +  +N   
Sbjct: 198 IPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNLYR 257

Query: 410 WLEKNRSDSHDLHMKSQV------VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +          +         +  +         V+L EE + +I   +++    K
Sbjct: 258 NSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQACGK 317

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I   D++LQ L+   +
Sbjct: 318 MITTGDEILQELVNLKR 334



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 25/142 (17%), Gaps = 26/142 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              +      +        F  + +   +D    ++
Sbjct: 61  GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTIST 117

Query: 100 PTHYISKLRDSLESYSKNLSED 121
                  +       S      
Sbjct: 118 SGDNEGAINGGTMEVSFTKDGS 139


>gi|330899403|gb|EGH30822.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 581

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 92/363 (25%), Gaps = 12/363 (3%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +  + E       + +   Q +   +D E  L+       ++     N +
Sbjct: 229 NPVDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGS 288

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDI 235
           +         +    D    LL     ++          +        G  +F++     
Sbjct: 289 L----NGGAVSLPLNDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTH 344

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             ++      T+      +       N  S  P   + A +                ++ 
Sbjct: 345 ELKQYFVKDGTNSWRMHALIDDRNPQNSASTTP---LTANIVFDSHGAVASLTGSPGLSS 401

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
                           +          I +       GI+       Q+ +  S      
Sbjct: 402 NGTQLKLTGWSPVMAVDPGTARE--RWISNGAAGSADGITIDFTRLLQHNATSSRSAAYV 459

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +     L   + +   K+     +A       L    R+   W     
Sbjct: 460 DGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP--RSDTRWTATAD 517

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   +  +        I         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 518 SGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTL 577

Query: 476 LEG 478
           ++ 
Sbjct: 578 IQS 580



 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/447 (6%), Positives = 96/447 (21%), Gaps = 18/447 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +   +    +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+         ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178

Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                      +               ++ +    +   + +  ++V   +        P
Sbjct: 179 DDPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV--PIFQNQL 290
             ++ E     +++   N   +  V  +                   +  +        L
Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQINGAWAANGSLNGGAVSLPL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           ++    L+              N   L     +        QG +  +          S+
Sbjct: 299 NDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                   +    +        +++     +         ++   T + L  ++      
Sbjct: 359 RMHALIDDRNPQNSASTTPLTANIVFDSHGAVASLTGSPGLSSNGTQLKLTGWSPVMAVD 418

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYS 437
               R                I  +  
Sbjct: 419 PGTARERWISNGAAGSADGITIDFTRL 445


>gi|119477951|ref|ZP_01618051.1| Flagellar basal body rod protein [marine gamma proteobacterium
           HTCC2143]
 gi|119448864|gb|EAW30106.1| Flagellar basal body rod protein [marine gamma proteobacterium
           HTCC2143]
          Length = 261

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 2/183 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +   V   F    + D  +   +     I  + +  +    L 
Sbjct: 77  TQKEFSDGSVQITEKPLDLAIVGRGFFEILMPDGTSAYSRNGQFQINADGEIVNARGLLL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                       V   +           +  +      V        L     N   ++E
Sbjct: 137 QPSITVPDDAQTVSISSDGIVEAQIAGQAAAQTLGNITVTNFINPTGLQSIGSNL--FIE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +             + +       V++ EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGTPQQGEPGIDGLGRLEQGALENSNVDVVEELVSMITTQRTYEMNSKVISTADQML 254

Query: 473 QTL 475
           Q +
Sbjct: 255 QYI 257



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 46/183 (25%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +    + A+I  N+ NA    Y R   +                    
Sbjct: 1   MNQALWISKTGLSAQDTRLATISNNLANAATVGYKRDSVVFEDLLYQIRRQPGAQSSQNT 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T            D  +      +    + + F  +            S  
Sbjct: 61  QLPSGLQVGTGVRVIGTQKEFSDGSVQITEKPLDLAIVGRGFFEIL------MPDGTSAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + + + +    N    +L  ++    +    + ++      +I   A  +    I+
Sbjct: 115 SRNGQFQINADGEIVNARGLLLQPSITVPDDAQTVSISSDGIVEAQIAGQAAAQTLGNIT 174

Query: 162 NLR 164
              
Sbjct: 175 VTN 177


>gi|325295399|ref|YP_004281913.1| flagellar basal-body rod protein FlgG [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065847|gb|ADY73854.1| flagellar basal-body rod protein FlgG [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 266

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 2/148 (1%)

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                    ++E   +        S      S       ++        + N       +
Sbjct: 113 AYTRAGNFQLNEEGYIVTPEGYKLSPNIQISSPETVVNISISPNGKVYVVRNTGGVQTTE 172

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +        L     N +  ++ + S        +   F  +++ +     VN+
Sbjct: 173 EVGTIKLYRFINPAGLKALGGNLL--VKTDASGEPVEGDPNTDGFGKLAQGFLEASNVNI 230

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EE+  LI  +++Y +++K I   D+ML
Sbjct: 231 VEEMVNLIVAQRAYEVNSKGITTADEML 258



 Score = 77.4 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 36/186 (19%), Gaps = 34/186 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L     +             I  NI N +   + +                        
Sbjct: 1   MLRALWTSATGMEAQQTNLDVISHNIANVNTVGFKKSRANFEDLIYQDIRDPGVMSSEEN 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V              L      +        F  ++           
Sbjct: 61  RVPSGIQIGLGVKVSDVSKI---FTQGSLMKTDKPLDLAIQGAGFFKIE------LPGGG 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDIL-GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    + + E Y        L     I + E VV    +   +V  +R     +  
Sbjct: 112 EAYTRAGNFQLNEEGYIVTPEGYKLSPNIQISSPETVVNISISPNGKVYVVRNTGGVQTT 171

Query: 158 LEISNL 163
            E+  +
Sbjct: 172 EEVGTI 177


>gi|188494513|ref|ZP_03001783.1| Flagellar basal body protein FlgE [Escherichia coli 53638]
 gi|188489712|gb|EDU64815.1| Flagellar basal body protein FlgE [Escherichia coli 53638]
          Length = 400

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N     + +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|330875984|gb|EGH10133.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 586

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 96/363 (26%), Gaps = 11/363 (3%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           N  +      +    E+      + +   Q +R  +D E  L+       ++   + N A
Sbjct: 233 NPVDPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGA 292

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 S           D     +   +       + +           +F++      
Sbjct: 293 ASGGAVSLPLIDGAASVLDPADAVMDRPVPA---FDSLDLKTYSDMFANAIFDSQGNQHE 349

Query: 237 FEKMNSYTVTSESNP-IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            ++       +     + IDG        +      I          +      +     
Sbjct: 350 LKQYFVKDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGG 409

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            L     + +                 + +       GI        Q+ +  S      
Sbjct: 410 AL-----QLNGWTPAMPAERVTGQDRWVSNGAAGSTSGIELDFTNLLQHNAASSRSSTHV 464

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +  ++     L+  + +  NK+     +A       L   AR+   W E   
Sbjct: 465 DGHAAGQLSSLSVGRDGILLAGFTNGMNKSIGQVILASFANAQGLQ--ARSDTRWTESAE 522

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S   D  +        +         V L +EL  LI+ + +Y  ++K I     ++QTL
Sbjct: 523 SGVADYEVPGVGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTL 582

Query: 476 LEG 478
           ++ 
Sbjct: 583 IQS 585



 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/469 (8%), Positives = 118/469 (25%), Gaps = 22/469 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN---- 61
            FN A +  N A+++      NI N+    +       +    +  + + R+   +    
Sbjct: 2   SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  AATQQNFNQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+++   T       ++ D         + +   ++    +    +   
Sbjct: 122 RLQGYAANDKGEIMRGLRT------DLQIDTSNVAARATTRVAENINLDASLPSLARLPA 175

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEKM 240
               D   +       +Q      G   +   +++    +   G   +           +
Sbjct: 176 FDPADPATYTRAVGRTIQDAGSGTGAGAVPAADHELKQYFVKTGDRQWSMYVLVDGRNPV 235

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
           +  +V      +        S  G++    KI           P  +     M+      
Sbjct: 236 DPNSVAPLHVTLEQKPNGSLSYSGNSQHLRKISDTEFALQGWRPAHEVNGAWMSNGAASG 295

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +   P+   + +V     A   + +       +     +      +    +        
Sbjct: 296 GAVSLPLIDGAASVLDPADAVMDRPVPAFDSLDLKTYSDMFANAIFDSQGNQHELKQYFV 355

Query: 361 FLWNVK-----NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
              N        + G    +    +    N +FD    + +          + G L+ N 
Sbjct: 356 KDGNNSWRMHVLIDGRNPQMPDSTEPLTANIVFDSGGSVRSLTGSSGLVSTNGGALQLNG 415

Query: 416 SDSHDLHMKSQVVFNHISESYS-NTVGVNLQEELSFLIKVEQSYNISNK 463
                   +       +S   + +T G+ L    + L+  + +   S++
Sbjct: 416 WTPAMPAERVTGQDRWVSNGAAGSTSGIELD--FTNLL--QHN-AASSR 459


>gi|170681389|ref|YP_001742373.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5]
 gi|170519107|gb|ACB17285.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5]
          Length = 400

 Score = 77.8 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGSCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS S   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGSCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|170021360|ref|YP_001726314.1| flagellar basal body FlaE domain-containing protein [Escherichia
           coli ATCC 8739]
 gi|169756288|gb|ACA78987.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC
           8739]
          Length = 400

 Score = 77.4 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 90/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D++  +     T  +                 +N     + +           +S +
Sbjct: 119 YPVDDSGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|197285508|ref|YP_002151380.1| flagellar basal-body rod protein [Proteus mirabilis HI4320]
 gi|227355999|ref|ZP_03840391.1| flagellar basal-body rod protein (distal rod protein) [Proteus
           mirabilis ATCC 29906]
 gi|194682995|emb|CAR43442.1| flagellar basal-body rod protein (distal rod protein) [Proteus
           mirabilis HI4320]
 gi|227163987|gb|EEI48889.1| flagellar basal-body rod protein (distal rod protein) [Proteus
           mirabilis ATCC 29906]
          Length = 260

 Score = 77.4 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +     +  L     N   +LE   S +   +         + + Y  T  VN
Sbjct: 168 QQVGQLTLTTFINDSGLESVGENL--YLETASSGAPTENAPGINGAGLLYQGYVETSNVN 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 226 VAEELVNMIQTQRAYEINSKAISTSDQMLQKLTQL 260



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 27/136 (19%), Gaps = 21/136 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +P  + + T       +  + LH+  +              +                 
Sbjct: 61  NAPSGLQIGTGVR---PVATERLHSQGNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRD 117

Query: 105 SKLRDSLESYSKNLSE 120
              +          S 
Sbjct: 118 GSFQMDQNGQLVTSSG 133


>gi|218461961|ref|ZP_03502052.1| flagellar hook protein FlgE [Rhizobium etli Kim 5]
          Length = 316

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/314 (8%), Positives = 63/314 (20%), Gaps = 3/314 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLS 119
               +   +    I             +                    +   E    N +
Sbjct: 61  QTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAA 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L     D+    V            +  +    I       +  L     V      
Sbjct: 121 GFQLMGYSYDSGAPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSNAKVAPVAPA 180

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              S + A    D        ++     + ++ +                 V        
Sbjct: 181 TLPSANLATTTADT--KKFSMVAYDRLGNKVMYDFYFTKTAVVTPPPAPPGVASTWEVSI 238

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +          F     V      ++       ++      +      L     +   
Sbjct: 239 YRNADAAVGGTTSFPYSTAVGDVGNGSLTFDANGKMISFGAIPITDPVTGLTINMDLSGF 298

Query: 300 SFSEKDPIAGNSEN 313
           +    D     + N
Sbjct: 299 TQLGADFAGTGTPN 312


>gi|300817270|ref|ZP_07097488.1| flagellar hook protein FlgE [Escherichia coli MS 107-1]
 gi|307313519|ref|ZP_07593140.1| fagellar hook-basal body protein [Escherichia coli W]
 gi|300530246|gb|EFK51308.1| flagellar hook protein FlgE [Escherichia coli MS 107-1]
 gi|306906687|gb|EFN37198.1| fagellar hook-basal body protein [Escherichia coli W]
 gi|315059542|gb|ADT73869.1| flagellar hook protein [Escherichia coli W]
 gi|323171064|gb|EFZ56713.1| flgE [Escherichia coli LT-68]
 gi|323379899|gb|ADX52167.1| fagellar hook-basal body protein [Escherichia coli KO11]
          Length = 400

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 105/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T         +     +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 TTPQTIEF--QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 88/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N       +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDDAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|307721135|ref|YP_003892275.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979228|gb|ADN09263.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica
           DSM 16294]
          Length = 262

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 57/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  +  I  +    ++  + 
Sbjct: 76  AINKIFSEGSLKQTDNNLDLAITGKGFFKMELPDGTEVYSKNGAFKIDQDGTVVNSDGYT 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V      N+         +     +                  L     N   ++
Sbjct: 136 LIPQIVIPPDATNINIGTDGTVTVIQPGQTQATQIGQIQTTNFINPAGLHAMGDNL--YI 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E + S      +        I + +     V L  EL+ LI  +++Y+ ++K+I  +D+M
Sbjct: 194 ETDSSGQPVEGIPGVDGLGTIRQGFVELSNVELVVELTDLITGQRAYDANSKIITTSDEM 253

Query: 472 LQTLLEGVK 480
           LQT     +
Sbjct: 254 LQTTNNLKR 262



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 51/212 (24%), Gaps = 29/212 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   + +                        
Sbjct: 1   MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFADLMYHVMEYAGTSTSDTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V         NK   +  L    + +      + F  ++              
Sbjct: 61  KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNNLDLAITGKGFFKME------LPDGTEVY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +    N     L   ++   +A  +    + +   +Q  +  A +  +++
Sbjct: 115 SKNGAFKIDQDGTVVNSDGYTLIPQIVIPPDATNINIGTDGTVTVIQPGQTQATQIGQIQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
            +N         + ++      +S        
Sbjct: 175 TTNFINPAGLHAMGDNLYIETDSSGQPVEGIP 206


>gi|306813303|ref|ZP_07447496.1| flagellar basal body FlaE domain-containing protein [Escherichia
           coli NC101]
 gi|305854066|gb|EFM54505.1| flagellar basal body FlaE domain-containing protein [Escherichia
           coli NC101]
          Length = 400

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 104/405 (25%), Gaps = 6/405 (1%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
             +       A+ E +      NN         +     +S   +        +    + 
Sbjct: 2   SYEIAATGLNAVNEQLDGI--SNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAGTAQS 59

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +       +    + +      +    +S     +          + +  +L   
Sbjct: 60  ISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGY 119

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            V      +   ++ I     ++    S   T               +    + ++  + 
Sbjct: 120 PVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSYT 179

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           D    +            +   +  D+   +      +    +  +    DP  G   + 
Sbjct: 180 DSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDPNTGKLTSP 239

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                 +     D      ++       QY S  S   +  +       N   +     +
Sbjct: 240 NTPQTIEF--QTDAAAPIDLTVDYSSCTQYGSEFSVTTNAANGYASATQNGVQVDDDGKV 297

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              Y +          +A       L     +   W++   S +  + +        +S 
Sbjct: 298 YATYSNGERMLQGQVVLATFPNENGLEAV--SGTAWVQTGESGTPLIGVPGSGTCGTLSS 355

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               +  V++  EL  L+  +++Y  + K+I  + ++   L + +
Sbjct: 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400



 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 89/397 (22%), Gaps = 5/397 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +  A    N  ++Q   I  NI NA    Y    T  +        +           +
Sbjct: 2   SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSVAG---TAQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S +     L             D   N               Y  N S   L  
Sbjct: 59  SISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   +     T  +                 +N     + +           +S +
Sbjct: 119 YPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASDAAIDRTTVPFDATNSSSY 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                    D L  + S     +    N  ++             VP        N+  +
Sbjct: 179 TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ--QTGVPATTLTFDPNTGKL 236

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           TS + P  I+    ++                   SV     N      +  +    +  
Sbjct: 237 TSPNTPQTIEFQTDAAAPIDLTVDYSSCTQYGSEFSVTTNAANGYASATQNGVQVDDDGK 296

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             A  S     L     +    N+                S    +   GS +   L + 
Sbjct: 297 VYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSG 356

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +   D+ +   +       +     +    T L+
Sbjct: 357 VLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLD 393


>gi|226950067|ref|YP_002805158.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto]
 gi|226841875|gb|ACO84541.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto]
          Length = 334

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 75/319 (23%), Gaps = 18/319 (5%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  +   F  Q       +S+ +  +T    N         G  +        
Sbjct: 20  DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIFTK 79

Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL 290
                   T  +     +    FI G    S+  +    G  +  +      V   ++  
Sbjct: 80  FTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGDNEGAINGGTMEVSFTKDG- 138

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
              +  L    S                          K+  G                 
Sbjct: 139 ---SFNLDEDGSLITSDGLRIMGYAIESADITKDATTGKIKVGFKNADEDPKAVTDKLVP 195

Query: 351 LRDGGSVSKKFL---WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           L     + K           +     ++    D  +       +A       L +  +N 
Sbjct: 196 LAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASFKNEGGLEKMGKNL 255

Query: 408 IGWLEKNRSDSHDLHMKSQV------VFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
                 +          +         +  +         V+L EE + +I   +++   
Sbjct: 256 YRNSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAEEFTEMIVANRAFQAC 315

Query: 462 NKLIMFTDKMLQTLLEGVK 480
            K+I   D++LQ L+   +
Sbjct: 316 GKMITTGDEILQELVNLKR 334



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/175 (8%), Positives = 30/175 (17%), Gaps = 26/175 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              +      +        F  + +   +D    ++
Sbjct: 61  GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTIST 117

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                  +       S                          A E   I  DA  
Sbjct: 118 SGDNEGAINGGTMEVSFTKDGSFNLDEDGSLITSDGLRIMGYAIESADITKDATT 172


>gi|194428463|ref|ZP_03061003.1| flagellar hook protein FlgE [Escherichia coli B171]
 gi|194413515|gb|EDX29797.1| flagellar hook protein FlgE [Escherichia coli B171]
          Length = 396

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 55/283 (19%), Gaps = 9/283 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q               A K        +    S+            A
Sbjct: 116 LTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNA 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             ++    +   D         +       NN  +    S   T        + F     
Sbjct: 176 DSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPTGTAEPAMKLVFNANGV 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            T     N              S      ++      + V   
Sbjct: 236 LTSNPTENITTGAINGADPATFSLSFLNSMQQNTGANNIVATT 278


>gi|206974982|ref|ZP_03235897.1| flagellar hook protein FlgE [Bacillus cereus H3081.97]
 gi|206747001|gb|EDZ58393.1| flagellar hook protein FlgE [Bacillus cereus H3081.97]
          Length = 407

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/338 (9%), Positives = 73/338 (21%), Gaps = 11/338 (3%)

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
               +              T                   ++        IS    I+   
Sbjct: 72  MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268
                          +  T         M S      ++   + G               
Sbjct: 132 GQYVFAYPADPSTGNVDLTGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191

Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                    +R     D                   +F+E D   G  +           
Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNDSKKETAFNEVDGAGGEVKFDAVGKPNPVN 251

Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
            + +       +         + +  +                  +A    ++  Y D  
Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            K      VA       L++       +   N +    + +  Q     +         V
Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGGAQEGANV 369

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 57/282 (20%), Gaps = 38/282 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  +      D    N  
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYTDGTITLTGGKTQAAMEGNGFFVV-----GDSKAGNME 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     D +   V         +Q     A   I    
Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADPSTGNVDL-TGIPGPLQVPMGSAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +   +               +  +      +      + +    +     +  +    
Sbjct: 172 GVVGGNIPADAKQITQELPVYDNAGNTWTMRVEF-KQDGEHNYKYKVYMRNDSKKETAFN 230

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
             DG         ++ F+ +      +    I  +G  V  +
Sbjct: 231 EVDG------AGGEVKFDAVGKPNPVNPEANIPFNGGTVKID 266


>gi|229058387|ref|ZP_04196771.1| Flagellar hook protein flgE [Bacillus cereus AH603]
 gi|228719896|gb|EEL71486.1| Flagellar hook protein flgE [Bacillus cereus AH603]
          Length = 407

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 2/217 (0%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
            +A     ++            ++ Q+   ++               + +  G       
Sbjct: 193 DNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKATTFEDVPGAGGNMTFDAVGNPSPKEQ 252

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                     I   +     + ++ +    G             +A    ++  Y D   
Sbjct: 253 SANIPFNGGNIKLDLSQLTNHPTDKTLSVTGVDGRAAATVKDCFIADGGYVMVKYSDGSM 312

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           K      VA       L++       +   N +    L    Q     I         V+
Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQNGAGKIRGGAQEGANVD 370

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 371 LSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/386 (8%), Positives = 79/386 (20%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKADDKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKLSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V         +  I       +   I
Sbjct: 113 FTRKGTFAISSDYYITNTEGQYVFAYPANAATGEVD--------LSGIPGPLQIPMGTAI 164

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +R     +     A     A +   +D       +  + ++    +   +        
Sbjct: 165 GGIRTSKGVVGGNIPADAKAIAQEIPVYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSK 224

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            +           ++ F+ + + +   +S  I  +G  +  +          K L     
Sbjct: 225 KATTFEDVPGAGGNMTFDAVGNPSPKEQSANIPFNGGNIKLDLSQLTNHPTDKTLSVTGV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   +   +A          D     +  +      +    +        +     
Sbjct: 285 DGRAAATVKDCFIADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKTGNGNYTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                ++            +   NV 
Sbjct: 345 ILALGASGQNGAGKIRGGAQEGANVD 370


>gi|222095377|ref|YP_002529437.1| flagellar hook protein flge [Bacillus cereus Q1]
 gi|221239435|gb|ACM12145.1| flagellar hook protein [Bacillus cereus Q1]
 gi|324325771|gb|ADY21031.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 406

 Score = 77.4 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/413 (8%), Positives = 96/413 (23%), Gaps = 17/413 (4%)

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                +    A +  +S   +   +      K + ++       +               
Sbjct: 4   ALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGNYAGTNP 63

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
               N       K+        +  I+            N       +   +       R
Sbjct: 64  KSIGNGV-----KMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGN---MEFTR 115

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
                  S+    +T  +         + G      +P  +      +      S  +  
Sbjct: 116 KGTFGISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGVVG 175

Query: 255 DGVVVSSNQGSA--VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
             +   +   S              +R       ++      ++   S  E+      + 
Sbjct: 176 GNIPADAKAISQEIPIYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKEEFKDVQGAG 235

Query: 313 NVPGLFIADGIKD-----LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
                                     +   +     + ++ +    G             
Sbjct: 236 GNMTFDAVGNPSPKEQAANIPFNGGNVKLDLSNLTNHPTDKTLSVTGVDGRAAATVKDCF 295

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +A    ++  Y D   K      VA       L++       +   N +    L    Q 
Sbjct: 296 IADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILALGASGQN 353

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               I  +      V+L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 354 GAGKIRGAAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVNLIR 406



 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/293 (7%), Positives = 60/293 (20%), Gaps = 30/293 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGNYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V            +          + 
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKG 172

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                  ++   ++  I     + +     ++         S  + +    +      V 
Sbjct: 173 VVGGNIPADAKAISQEIPIYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKEEFKDVQ 232

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
            + G   F+ V      E+  +      +  + +  +       +    G   
Sbjct: 233 GAGGNMTFDAVGNPSPKEQAANIPFNGGNVKLDLSNLTNHPTDKTLSVTGVDG 285


>gi|4580018|gb|AAD24206.1|AF049342_4 flagellar hook protein FlgE [Treponema denticola ATCC 33520]
          Length = 237

 Score = 77.4 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 10/180 (5%), Positives = 37/180 (20%), Gaps = 14/180 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++           N   +   I  N+ N +   + R                 R   +  
Sbjct: 1   MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60

Query: 61  -----------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A+    +                   +          
Sbjct: 61  GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             E    N +  +  +  +   E        ++ + + +     ++++ + +    +   
Sbjct: 121 DKEGTLVNPANGMRVQGWMAE-EAEGFRIINTSGQTEDLNIPIGQKLDAKATTSVNYACN 179


>gi|146281773|ref|YP_001171926.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri A1501]
 gi|145569978|gb|ABP79084.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri A1501]
          Length = 261

 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +      +       F    + D      +  S  +  + Q  ++  +  
Sbjct: 77  TQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSFHLDSDGQVVTSNGYAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 +    ++  +       A       L     N   +LE
Sbjct: 137 EPAIVVPAETQTFTVGEDGTVSVTTLGNAQPQIIGNIQTADFINPAGLQAMGSNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +          + ++      V++ EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVSTPGLNGLGTVLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 32/185 (17%), Gaps = 33/185 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     ++   +       +I  N+ N     + R                        
Sbjct: 1   MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +          L      +      + F  +            
Sbjct: 61  ELPSGLQLGTGVRVTGTQKI---FTTGSLQTTEQPLDMAINGRGFFQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                        +      +   L   ++  AE                  +A  +I  
Sbjct: 112 VSYTRDGSFHLDSDGQVVTSNGYALEPAIVVPAETQTFTVGEDGTVSVTTLGNAQPQIIG 171

Query: 159 EISNL 163
            I   
Sbjct: 172 NIQTA 176


>gi|118581849|ref|YP_903099.1| flagellar basal body rod protein FlgG [Pelobacter propionicus DSM
           2379]
 gi|118504559|gb|ABL01042.1| flagellar basal-body rod protein FlgG [Pelobacter propionicus DSM
           2379]
          Length = 262

 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 49/182 (26%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +  +        +          I+  D       +     + Q R             
Sbjct: 81  FTTGDFSQTGNELDIAIEGDGFFQIQMPDGTTAYSRAGAFKKDDQGRIVTPNGDPLLPEI 140

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                  K   G    ++              +           ++     + E + S +
Sbjct: 141 VIPNNTTKIDIGSDGTVSATQSGQTTPTTVGTIQLALFANPAGLFSMGKNLYKETDSSGT 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  Q     +++       V++ EE+  +I  +++Y  ++K +   D+MLQT    
Sbjct: 201 PTTGTPGQDGLGTVAQGMLEMSNVSVAEEMVNMIIGQRAYEANSKAVQAADEMLQTANNL 260

Query: 479 VK 480
            +
Sbjct: 261 RR 262



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 10/174 (5%), Positives = 30/174 (17%), Gaps = 15/174 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48
           ++     A +      +    +  N+ N +   + R                     +  
Sbjct: 1   MMRALWTAASGMQAQQKNIDVVAHNLANVNTTGFKRSRADFEDLIYQNQRSTGSPATNTT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107
            V    Q      +        +    Q           +           +        
Sbjct: 61  QVPTGIQIGLGTRLASVSKLFTTGDFSQTGNELDIAIEGDGFFQIQMPDGTTAYSRAGAF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
           +   +      + D L   ++        +  +                   I 
Sbjct: 121 KKDDQGRIVTPNGDPLLPEIVIPNNTTKIDIGSDGTVSATQSGQTTPTTVGTIQ 174


>gi|327398496|ref|YP_004339365.1| flagellar hook-basal body protein [Hippea maritima DSM 10411]
 gi|327181125|gb|AEA33306.1| flagellar hook-basal body protein [Hippea maritima DSM 10411]
          Length = 589

 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 99/386 (25%), Gaps = 20/386 (5%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
           +   N +        + NA++      +          + D +  +          +  +
Sbjct: 206 TLRVNFNSVFNSNGELLNAQDGDNFQISYDGGTTWHTYEYDNDGNVSAGAEGFTTIDDLL 265

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N               F D +  +    +  I I       +       +   L     
Sbjct: 266 SNMQSDVVADGITAEVSFEDGQVKIKNTGNNDISIRVRPTTEDPTFPTPQENQKLT--TV 323

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +   + +      S  N      +V S    S   K KI       +     ++  L  
Sbjct: 324 FENLNQVVEPGETISSQNMETATHIVHSFFYDSTGDKHKIDVTFYRINQNQWAYEVSLPN 383

Query: 293 MARVLIG-------------SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
               +                 + + P    + N         I   +            
Sbjct: 384 NDGTVANNTGVVSFDKNGGLDVNTQSPTVNVTLNSGAPPTQLLINLWNTDSGGYEGNQFT 443

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
              Q+  +          S   +     +    +++  Y +  + +     ++       
Sbjct: 444 GLTQFAMDSDTSFQDQDGSHSGILQKVFVDRDGNIMGTYSNGNSYSIAKLAISKFMNPQG 503

Query: 400 LLEYARNS-----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           L    +           E   S    + + ++     I  ++     V+L E    LI+ 
Sbjct: 504 LKREGKTMFKTTPNADSEDVLSSYGFIGVANEGGRGMILSNHLEASNVDLGEAFVNLIEY 563

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ +  ++K +   D++LQT ++  +
Sbjct: 564 QRGFEANSKGVTTADQLLQTAIQLKR 589



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/437 (7%), Positives = 94/437 (21%), Gaps = 32/437 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++     + N          SI  NI N +   Y +                        
Sbjct: 1   MIRALYTSSNGLFEQQLGVDSITNNIANVNTIGYKKTRPTFASLLYQTQKLGMPGENPMQ 60

Query: 52  ---VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V  +S +  M +  L   +         + F  L +   +     +          
Sbjct: 61  IGLGVKLQSTDTIMSEGTLITGNKDTDLAIEGKGFFTLLDP--SSKDSASYLFTRAGDFS 118

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNF----NTSAREVQKIRADADKEIELEISNLR 164
              +    N +  ++   + + +++    +     T+      I+       E   +   
Sbjct: 119 FDADGNLVNPNGYMVVGWLAEQSQQGTGYYIPEDPTTGLPTGTIQPINISSYEDVPAVAS 178

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE-----------IIGISTIVRN 213
            ++     +N + K    S     +    R       +               IS     
Sbjct: 179 TYIRFKANLNSSSKVDEYSPLKTSNDPTLRVNFNSVFNSNGELLNAQDGDNFQISYDGGT 238

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
                 Y +DG             + +++      ++ I  +                  
Sbjct: 239 TWHTYEYDNDGNVSAGAEGFTTIDDLLSNMQSDVVADGITAEVSFEDGQVKIKNTGNNDI 298

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSF-SEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           ++     +  P F    +      +    ++         +         +         
Sbjct: 299 SIRVRPTTEDPTFPTPQENQKLTTVFENLNQVVEPGETISSQNMETATHIVHSFFYDSTG 358

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
              +      +   N          +   + N   +  +        ++ +        +
Sbjct: 359 DKHKIDVTFYRINQNQWAYEVSLPNNDGTVANNTGVVSFDKNGGLDVNTQSPTVNVTLNS 418

Query: 393 GINTNVTLLEYARNSIG 409
           G      L+       G
Sbjct: 419 GAPPTQLLINLWNTDSG 435


>gi|152990359|ref|YP_001356081.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2]
 gi|151422220|dbj|BAF69724.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2]
          Length = 266

 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 2/151 (1%)

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                    I     +               +       ++        + +       +
Sbjct: 113 AYTRAGNFQIDNEGNLVTDQGYKVLPNIQINAPETLVGISISPNGKVVAVRSEGVGQTTE 172

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +        L     N   +++   S            F  +S+ +     VN+
Sbjct: 173 ELGQLKLYRFINPAGLKAIGGNL--FVQSEASAEPIEGDPDTNGFGKLSQGFLEMSNVNI 230

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            EE+  LI  +++Y +++K I   D+ML+T+
Sbjct: 231 VEEMVNLIVAQRAYEMNSKGITTADEMLRTV 261



 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 41/183 (22%), Gaps = 28/183 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +           +  NI N +   + +                        
Sbjct: 1   MIRALWTSASGMQAQQTNLDVVSNNIANVNTTGFKQSRANFEDLIYQNIKDPGVENGNGN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +                 L      +      + F  ++              
Sbjct: 61  RLPTGIQIGLGVRVADVAKIFSQGSLKHTERDLDVAIQGKGFFKIE------LPGGGEAY 114

Query: 102 HYISKLRDSLES-YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   E     +    +L    I+  E +V    +   +V  +R++   +   E+
Sbjct: 115 TRAGNFQIDNEGNLVTDQGYKVLPNIQINAPETLVGISISPNGKVVAVRSEGVGQTTEEL 174

Query: 161 SNL 163
             L
Sbjct: 175 GQL 177


>gi|229195966|ref|ZP_04322719.1| Flagellar hook protein flgE [Bacillus cereus m1293]
 gi|228587525|gb|EEK45590.1| Flagellar hook protein flgE [Bacillus cereus m1293]
          Length = 407

 Score = 77.0 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/338 (9%), Positives = 74/338 (21%), Gaps = 11/338 (3%)

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
               +              T                   ++        IS    I+   
Sbjct: 72  MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268
                          +  T         M S      ++   + G               
Sbjct: 132 GQYVFAYPADPSTGNVDLTGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191

Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                    +R     D                   +F+E D   G  +           
Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNDSKKETAFNEVDGAGGEVKFDAVGKPNPVN 251

Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
            + +       +         + +  +                  +A    ++  Y D  
Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            K      VA       L++       +   N +    + +  Q     +  S      V
Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGSAQEGANV 369

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407


>gi|188587423|ref|YP_001918968.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352110|gb|ACB86380.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 265

 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 49/188 (26%), Gaps = 2/188 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R       ++     +       F      + +    +  S  I       ++    
Sbjct: 79  ATLRDFSTGSMQETEQDFDLAIEGDGFFIIEGTEGEEYYTRDGSFKIDGEGNLVTSDGLH 138

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                          ++     +I    D          +A       L     N     
Sbjct: 139 VQSFDGEIPQEATNVSITEEGRVIATLEDGETDEIGEIEIASFINPAGLEAQGSNLYS-- 196

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    + +  +     + + +     VN+ EE+  +I  +++Y  ++K I  TD+M
Sbjct: 197 ATAASGDASVGLPGENGRGQLQQGFLEGSNVNIAEEMVNMITAQRAYETNSKSIQSTDEM 256

Query: 472 LQTLLEGV 479
           +       
Sbjct: 257 MSIANNLK 264



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 51/238 (21%), Gaps = 20/238 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +        +  N   +    +  N+ NA+   Y                          
Sbjct: 1   MFRSLWTGASGMNAQQKNMDVVSNNLANANTTGYKNSRAEFQDLIYATLERPDGPDDLGD 60

Query: 50  ---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ-SFEALKEMMSADDHYNN-SPTHYI 104
               T    +  +       L   S+   Q+           +     +           
Sbjct: 61  DGRSTPAGIQIGHGAKNSATLRDFSTGSMQETEQDFDLAIEGDGFFIIEGTEGEEYYTRD 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELEISN 162
              +   E          +     +  +E      T    V     D   D+  E+EI++
Sbjct: 121 GSFKIDGEGNLVTSDGLHVQSFDGEIPQEATNVSITEEGRVIATLEDGETDEIGEIEIAS 180

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                      ++      AS   +     +      +   + G +  +      ++ 
Sbjct: 181 FINPAGLEAQGSNLYSATAASGDASVGLPGENGRGQLQQGFLEGSNVNIAEEMVNMIT 238


>gi|237799216|ref|ZP_04587677.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022071|gb|EGI02128.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 501

 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/386 (10%), Positives = 93/386 (24%), Gaps = 6/386 (1%)

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            +  ++   +       N    +       +A        T+             +    
Sbjct: 116 LSDQVNSQLNQGIDSKGNFGSSLYSSINSADAITQRSIGKTTNSGGSGNLNVTIGDASKL 175

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++               +        A    D         S  +  + +   ++  + 
Sbjct: 176 TADDYEVTFSDASNFTIRRLPNGESVGAGALSDNPPKQFDGFSVSLNGNNLAAGDSFKLT 235

Query: 220 YTSDGTTLFET--VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
            T  G +                        SN           N  S +      A L+
Sbjct: 236 PTRTGASGISVVLTDAKDIAAAAPLTATAGSSNSGTGGFTQPVLNTKSNIYSSTQTADLR 295

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                    +  +  ++   + ++S  +   G   +  G  +   I        +     
Sbjct: 296 NALKDSAPMKLVMGAVSSTGVQTYSLINASGGAVLDQNGNAVGGSIIQGQANTVKLNVGY 355

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA----G 393
                   S  +F             +  ++       +   ++     +          
Sbjct: 356 TDTTTTPSSKTAFELQMTISGSPVANDTFSIGMTGGGSSDNRNALAVVGLQTAKTVGVSN 415

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                +L     N +  +    S   +    +  V      S  +  GV+L EE S LIK
Sbjct: 416 GGVGSSLSGSYANLVSVVGTLASQGKNDVTATAAVVGQAKASRDSVSGVSLDEEASNLIK 475

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q Y  S+++I     +  TL+  +
Sbjct: 476 YQQYYTASSQIIKAAQTIFSTLINSL 501


>gi|332525064|ref|ZP_08401244.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus
           JA2]
 gi|332108353|gb|EGJ09577.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus
           JA2]
          Length = 260

 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 2/183 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             R       ++   + +       F    + D      +     +    Q  +N  +  
Sbjct: 77  TTRNFSQGNLQQTGNSYDIAIKGNGFFQIQMPDGTTGYTRDGGFQVDNAGQLVTNQGYPV 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
             G         V         +    ++         +A       L     N     E
Sbjct: 137 QPGITIPADAKTVTVADDGTVQVTTAGNATPTTVGQLQLANFINPAGLESLGGNLYA--E 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S + +           + + +  T  VN+ EEL  +I  +++Y +++K I  +D+ML
Sbjct: 195 TAASGTPNTGTPGTNELGALQQGFVETSNVNVVEELVNMIATQRAYELNSKAIQTSDQML 254

Query: 473 QTL 475
           Q L
Sbjct: 255 QKL 257



 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/183 (7%), Positives = 33/183 (18%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+        +   I  N+ N     + R                       +
Sbjct: 1   MLRSLWIAKTGMEGQQTKLDVISNNLANVGTNGFKRGGVQFEDLIYQNLRQAGAASSEQS 60

Query: 45  ISPENVTVVTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V          +N     L    ++         F  ++           +  
Sbjct: 61  TLPTGLQVGLGVRAAGTTRNFSQGNLQQTGNSYDIAIKGNGFFQIQ------MPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +              +   +   A+                  +A      ++ 
Sbjct: 115 TRDGGFQVDNAGQLVTNQGYPVQPGITIPADAKTVTVADDGTVQVTTAGNATPTTVGQLQ 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|242278484|ref|YP_002990613.1| flagellar basal body rod protein FlgG [Desulfovibrio salexigens DSM
           2638]
 gi|242121378|gb|ACS79074.1| flagellar basal-body rod protein FlgG [Desulfovibrio salexigens DSM
           2638]
          Length = 260

 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 3/172 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
              P     +G            + T     +  S+   +   G   +            
Sbjct: 89  TGNPLDIAIEGNGFFLVDRNGEDAYTRSGAFKLDSDGRLVTSNGYPLQPEFTVPAEAVNV 148

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG---WLEKNRSDSHDLHMKSQVV 428
               + +  + +KN      A I     + E   N++G   ++E   S +       +  
Sbjct: 149 VVSEDGHIAALDKNGTELSSADITIYDFINEAGLNAVGKNLYVETEASGAAIQGTPGEDN 208

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F  +++ Y     V L +E+  LI  +++Y  ++K I  +D MLQT +   +
Sbjct: 209 FGTLAQGYLEGSNVELVDEMVGLIVGQRAYETNSKAITTSDSMLQTAINVKR 260



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 29/153 (18%), Gaps = 28/153 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A             +  N+ N + + + +                        
Sbjct: 1   MMRSLWTAATGMVAQQTHIDVLSNNLANVNTQGFKKSRVEFEDLMYQTMRIAGSETEGGN 60

Query: 46  -SPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +       S +K        +  + +        F          D       
Sbjct: 61  RLPTGMQIGMGVKEVSIHKFFSQGSFESTGNPLDIAIEGNGF-------FLVDRNGEDAY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                 +   +      +   L       AE V
Sbjct: 114 TRSGAFKLDSDGRLVTSNGYPLQPEFTVPAEAV 146


>gi|332296627|ref|YP_004438550.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179730|gb|AEE15419.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM
           14796]
          Length = 559

 Score = 77.0 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/402 (9%), Positives = 97/402 (24%), Gaps = 9/402 (2%)

Query: 85  ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL---SEDILGKTVIDNAEEVVQNFNTS 141
            + + M A    N + T  +   + +  S S      +        +  +  V      +
Sbjct: 157 PIGQSMPAKQSNNITMTGNLDASQYANTSSSTTPYAVTSSGAIYDSLGVSHSVTTVITPT 216

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
             +              ++ +                  + + +     +         I
Sbjct: 217 GTQNTWKWRTLTTLPSADVPSKTAAAPSGPATATGNITLSFNGYAIQSIVGDNVPYNISI 276

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +   G +T       +    +D       V  + +        +   +     + + ++ 
Sbjct: 277 TVQNGDTTSTIEQKVINAINNDQILKNYFVASNNSGSVNLQSKLVDPTGTYGTNWLTITE 336

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK----DPIAGNSENVPGL 317
           N GS      +         V     + +   +     +F+      +            
Sbjct: 337 NDGSTGAATGLNNFSYASSDVGTTPVSNVYATSGYGTLTFNSNGSLSNVTTTYPTPSTST 396

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                            +       QY  + S                 ++     +   
Sbjct: 397 ATLLINPSTGASTPWTPTINFSGMTQYGGSSSLNFASQDGYSSGSLQSYSIDQSGVITGT 456

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
           Y +          +A       L     N       + S +  +          I  S  
Sbjct: 457 YSNGLTNAIGQIALANFPNPSGLTSNGSNIYST--SSNSGTAQIGAAGSGGIGTIIPSAL 514

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               V+L ++ + LI  E+ Y  + ++I  +D+MLQ LL   
Sbjct: 515 EMSNVDLSQQFTNLITTERGYEANARVITTSDQMLQDLLSLK 556



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/458 (8%), Positives = 99/458 (21%), Gaps = 24/458 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49
           +L   + A +   N       I  NI N +   +       +                  
Sbjct: 1   MLRAMSSAVSGLQNNQTAMDVIGNNIANVNTIGFKASTVTFSQMLSQTLSGASAPQNGLG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +        SS+     +              ++ + +          
Sbjct: 61  GINPMQIGLGTQIAAISTPFTSSSTENTGVNTDLAIQGNGFFIVNNGSQNFYTRDGSFNV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                  N +   +     D++  V  +   S  ++   ++   K+            S+
Sbjct: 121 DANGNLVNSAGLKVQGWQADSSGVVNPSGPVSDLKIPIGQSMPAKQSNNITMTGNLDASQ 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               + +      +   A             ++ +I  +          + T     +  
Sbjct: 181 YANTSSSTTPYAVTSSGAIYDSLGV---SHSVTTVITPTGTQNTWKWRTLTTLPSADVPS 237

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                 +     +  +T   N   I  +V  +   +     +        +  V    N 
Sbjct: 238 KTAAAPSGPATATGNITLSFNGYAIQSIVGDNVPYNISITVQNGDTTSTIEQKVINAINN 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
              +    + S +       +    P          +        + T   N  Y S+  
Sbjct: 298 DQILKNYFVASNNSGSVNLQSKLVDPTGTYGTNWLTITENDGSTGAATGLNNFSYASSDV 357

Query: 350 FLRDGGSVSKKFLW-----NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +V     +     N                +     + +P  G +T  T     
Sbjct: 358 GTTPVSNVYATSGYGTLTFNSNGSLSNVTTTYPTPSTSTATLLINPSTGASTPWTPTINF 417

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                +   +  +       S      +     +  GV
Sbjct: 418 SGMTQYGGSSSLNFASQDGYSS---GSLQSYSIDQSGV 452


>gi|189426344|ref|YP_001953521.1| hypothetical protein Glov_3295 [Geobacter lovleyi SZ]
 gi|189422603|gb|ACD97001.1| protein of unknown function DUF1078 domain protein [Geobacter
           lovleyi SZ]
          Length = 296

 Score = 76.6 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 8/183 (4%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + S  +P    + +     +       D        + +              D    
Sbjct: 122 SNNRSLINPDGYVALDENRQPVVFVSTYTDTSGNVLDFQKVAGVDAQGRLQLLYADNNGN 181

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S K  +    +   P              I +P        TL +   N++G        
Sbjct: 182 SSKVYYAGNGVVPVPTTTGAI--GLGTARIPNPPGLEKVGSTLFKSTGNAVGGSGTP--- 236

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              +  +S      I  +      V++  E+  +I  +++Y+ ++K I   D+M Q +L 
Sbjct: 237 ---IVTRSNGTNEKILSNNLELSNVDMATEMVKMILTQRAYSANSKTITTADEMTQEVLN 293

Query: 478 GVK 480
             +
Sbjct: 294 LKR 296



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 40/161 (24%), Gaps = 12/161 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTV 52
           MS+        +     ++    I  N+ N++   +     + +         + +    
Sbjct: 1   MSITGAMFTGVSGLLANAEGLNVIGNNLSNSNTIGFKGGRMLFSDLLSAPIGNNSQVGRG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLR 108
           V  +  +       L + +           F +         +A    +   +   +   
Sbjct: 61  VQIQKVDNLFSQGSLESTTVVTDLAIQGDKFFSFAVPGTTAAAAIAVTDAYYSRAGALRI 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
           DS      N    +           V    +TS   +   +
Sbjct: 121 DSNNRSLINPDGYVALDENRQPVVFVSTYTDTSGNVLDFQK 161


>gi|121534936|ref|ZP_01666755.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans
           Nor1]
 gi|121306535|gb|EAX47458.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans
           Nor1]
          Length = 262

 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 61/254 (24%), Gaps = 4/254 (1%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V +  N + +++      +                 + +         +        +
Sbjct: 11  GMVAQQANVDVISNNLANVNTTGFKKSRTDFQDLMYQTIRQAGAATGADTQLPTGIQIGH 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            + ++A   I +           +          I   D  L          + Q R   
Sbjct: 71  GVRQVATQKIYTQGNFQQTGNPLDLAIEGDGFFQITLPDGTLAYTRDGAFKKDAQGRIVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAGINTNVTLLEYARN 406
           S                + L      +                 +        L    RN
Sbjct: 131 SEGYPLEPQIIIPENATELLISADGRVTAKIPGQTDPQDLGQIQIVRFINPAGLDSIGRN 190

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +   E   S +  +          + + Y     V + EE+  +I  +++Y I+ K I 
Sbjct: 191 LL--KETAASGAPVVLNPGTDGAGTLVQQYLEMSNVQVVEEMVNMIVAQRAYEINAKAIT 248

Query: 467 FTDKMLQTLLEGVK 480
             D ML  +    +
Sbjct: 249 TADDMLGQVANLKR 262



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/239 (7%), Positives = 49/239 (20%), Gaps = 31/239 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +           I  N+ N +   + +  T                     
Sbjct: 1   MMRALWTAGSGMVAQQANVDVISNNLANVNTTGFKKSRTDFQDLMYQTIRQAGAATGADT 60

Query: 46  -SPENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +    R                 + +        F  +               
Sbjct: 61  QLPTGIQIGHGVRQVATQKIYTQGNFQQTGNPLDLAIEGDGFFQI------TLPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI---DNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 +   +          L   +I   +  E ++        ++       D     
Sbjct: 115 TRDGAFKKDAQGRIVTSEGYPLEPQIIIPENATELLISADGRVTAKIPGQTDPQDLGQIQ 174

Query: 159 EISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            +  +     +    N       + +    +   D    L+Q+  E+  +  +    N 
Sbjct: 175 IVRFINPAGLDSIGRNLLKETAASGAPVVLNPGTDGAGTLVQQYLEMSNVQVVEEMVNM 233


>gi|229109210|ref|ZP_04238809.1| Flagellar hook protein flgE [Bacillus cereus Rock1-15]
 gi|228674220|gb|EEL29465.1| Flagellar hook protein flgE [Bacillus cereus Rock1-15]
          Length = 406

 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 5/195 (2%)

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q + D               +  ++   P           +    +     +  +P   
Sbjct: 217 VQMRNDSKKEGFKDVEGAGGNMTFDAVGNPSPKEQAANIPFNGGNIKLDLSNLTNHPT-- 274

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            + +    G             +A    ++  Y D   K      VA       L++   
Sbjct: 275 -DKTLSVTGVDGRAAATVKDCFIADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKTGN 333

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
               +   N +    L    Q     +  S      V+L  E   L+  ++ +  + K+I
Sbjct: 334 G--NYTATNTTGILALGASGQNGAGKVRGSAQEGANVDLSVEFVDLMLYQRGFQGNAKVI 391

Query: 466 MFTDKMLQTLLEGVK 480
             +D++L  ++  ++
Sbjct: 392 KVSDEVLNEVVNLIR 406



 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/293 (7%), Positives = 60/293 (20%), Gaps = 30/293 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKADDKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKLSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNME----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V            +          + 
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKG 172

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                  ++   ++  I     + +     ++         S  + +    +      V 
Sbjct: 173 VVGGNIPADAKAISQEIPIYDNAGNTWTMRVEFTQTSEHNYSYKVQMRNDSKKEGFKDVE 232

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
            + G   F+ V      E+  +      +  + +  +       +    G   
Sbjct: 233 GAGGNMTFDAVGNPSPKEQAANIPFNGGNIKLDLSNLTNHPTDKTLSVTGVDG 285


>gi|42780846|ref|NP_978093.1| flagellar hook protein FlgE [Bacillus cereus ATCC 10987]
 gi|42736766|gb|AAS40701.1| flagellar hook protein FlgE, putative [Bacillus cereus ATCC 10987]
          Length = 407

 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/338 (8%), Positives = 74/338 (21%), Gaps = 11/338 (3%)

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
               +              T                   ++        IS    I+   
Sbjct: 72  MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268
                          +  +         M S      ++   + G               
Sbjct: 132 GQYVFAYPADPSTGNVDLSGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191

Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                    +R     D                   +F+E +   G  +           
Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNESKKETAFNEVNGAGGEVKFDAVGKPDPVN 251

Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
            + +       +         + +  +                  +A    ++  Y D  
Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            K      VA       L++       +   N +    + +  Q     +  S      V
Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGSAQEGANV 369

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/282 (8%), Positives = 58/282 (20%), Gaps = 38/282 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  +      D    N  
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYTDGTITLTGGKTQAAMEGNGFFVV-----GDSKAGNME 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     D +   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADPSTGNVDL-SGIPGPLQVPMGSAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +   +               +  +      +      + +    +     +  +    
Sbjct: 172 GVVGGNIPADAKQITQELPVYDNAGNTWTMRVEF-KQDGEHNYKYKVYMRNESKKETAFN 230

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
             +G         ++ F+ +      +    I  +G  V  +
Sbjct: 231 EVNG------AGGEVKFDAVGKPDPVNPEANIPFNGGTVKID 266


>gi|253990125|ref|YP_003041481.1| flagellar basal-body rod protein flgg [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781575|emb|CAQ84738.1| flagellar basal-body rod protein flgg (distal rod protein)
           [Photorhabdus asymbiotica]
          Length = 260

 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
           F    + D  +   +  S     N Q  +   FL            ++   +     +  
Sbjct: 102 FFQVQLPDGSSAYTRDGSFQEDQNGQLVTANGFLVFPTITIPDNATDIAISSDGVVSVKV 161

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              S  +      +        L     N   ++E + S     +         +   Y 
Sbjct: 162 QGQSAPQQVGQFTLTTFINENGLESIGENL--YVETSSSGVPIENTPGINGAGLLQHKYL 219

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            T  VN+ EEL  +I+ +++Y +++K +  +D+MLQ L + 
Sbjct: 220 ETSNVNIAEELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQL 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/155 (7%), Positives = 32/155 (20%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   ++        + F  ++          +
Sbjct: 61  RLPSGLQIGTGVRPVATERIHSQ---GNLSGTNNNHHVAIRGKGFFQVQ------LPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           S        ++         +  ++  T+      
Sbjct: 112 SAYTRDGSFQEDQNGQLVTANGFLVFPTITIPDNA 146


>gi|94987183|ref|YP_595116.1| flagellar basal body rod protein FlgG [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731432|emb|CAJ54795.1| Flagellar basal body L-ring protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 261

 Score = 76.6 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 67/252 (26%), Gaps = 2/252 (0%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V + +N + +++    + ++                +           R  V      
Sbjct: 11  GMVAQQLNIDVISNNLANTNTSGFKKSRAEFEDLMYQTMKIAGSATDGDNRIPVGIQVGM 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   A     +  +        +          +   D  +                  
Sbjct: 71  GVRPTAVHKFFTQGDFQNTGNPLDMAIEGEGFFQVLVGDQLMYTRAGAFKLNQDGTLVTA 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +        +         ++    +     +         P+        L    RN  
Sbjct: 131 NGYPLQPEFTVPPDAKSVAISERGRITALDANGQEIAAGEIPLYSFVNPAGLDAKGRNL- 189

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            ++    S      +  +     I++ +     V + +E+  +I  +++Y +++K I  +
Sbjct: 190 -YIPTEASGEAVEGVPGEENLGTIAQGFLEMSNVEVVDEMVQMIVGQRAYEMNSKAIQTS 248

Query: 469 DKMLQTLLEGVK 480
           D MLQT ++  +
Sbjct: 249 DNMLQTAVQLKR 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/199 (8%), Positives = 40/199 (20%), Gaps = 30/199 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMVAQQLNIDVISNNLANTNTSGFKKSRAEFEDLMYQTMKIAGSATDGDN 60

Query: 47  --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           + +      + F  +          +    
Sbjct: 61  RIPVGIQVGMGVRPTAVHKFFTQGDFQNTGNPLDMAIEGEGFFQVL-------VGDQLMY 113

Query: 102 HYISKLRDSLESYSKNLSEDILG--KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + +      +   L    TV  +A+ V  +       +     +        
Sbjct: 114 TRAGAFKLNQDGTLVTANGYPLQPEFTVPPDAKSVAISERGRITALDANGQEIAAGEIPL 173

Query: 160 ISNLRRFLSELTVVNDAIK 178
            S +     +    N  I 
Sbjct: 174 YSFVNPAGLDAKGRNLYIP 192


>gi|304310887|ref|YP_003810485.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1]
 gi|301796620|emb|CBL44832.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1]
          Length = 261

 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G+     Q+   +      +     +       +    A +   +   F    + D 
Sbjct: 51  QPGGQSSQDTQLPSGLQVGTGVKTVATKKQHTEGTIQTTGQALDVAIMGRGFFQVLMPDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                +  +  +       +      +      +   +V                     
Sbjct: 111 AIAYTRDGAFQLSAEGDLVTAEGLSLEPAINVPEGSQSVTIGNDGTVTAVDGQTKQQIEI 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +A       L     N   + E   S +             + ++      VN+ E
Sbjct: 171 GNIQLADFVNPAGLESVGSNL--YRETVASGAPTEAQPGTDGTGTLQQNALEASNVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           EL  +I+ +++Y +++K+I   D+ML
Sbjct: 229 ELVNMIETQRAYEMNSKVISTVDQML 254



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 45/189 (23%), Gaps = 32/189 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + A    +++  +    + ++I  N+ N     + R   +       V            
Sbjct: 1   MNAALWISKSGLSAQDLRLSTISNNLANVSTTGFKRDIAVFQDLLYQVQRQPGGQSSQDT 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K   +  +     A+    + + F  +               
Sbjct: 61  QLPSGLQVGTGVKTVATKKQHTEGTIQTTGQALDVAIMGRGFFQVL------MPDGAIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + S E          L     + A  V +   +            D + + +I 
Sbjct: 115 TRDGAFQLSAEGDLVTAEGLSL-----EPAINVPEGSQSVTIGNDGTVTAVDGQTKQQIE 169

Query: 162 NLRRFLSEL 170
                L++ 
Sbjct: 170 IGNIQLADF 178


>gi|301051131|ref|ZP_07197962.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300297215|gb|EFJ53600.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 113

 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 33/106 (31%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
              +   +      +      +    +  +   + +  +    +           V   +
Sbjct: 7   AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQL 66

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           S    +  GVNL EE   L + +Q Y  + +++   + +   L+  
Sbjct: 67  SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 112


>gi|187932866|ref|YP_001885049.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund
           17B]
 gi|187721019|gb|ACD22240.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund
           17B]
          Length = 366

 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 85/277 (30%), Gaps = 21/277 (7%)

Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
             G  T    +    +  S    L      +I + +  ++T+  E N +  DG  V    
Sbjct: 111 YAGDKTGTGADTKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADGYRVMGYL 170

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 GK       +D   P             + ++ + D    ++           I
Sbjct: 171 LKDGDDGKPSVAWGEKDGDAP-------------VANYVDADSKNLHAVGEGAQLNTLKI 217

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            D      +                SF      V    L +    A     +  + +   
Sbjct: 218 PDKVLAPKRDPDGKPTAEFVEVPVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEG 277

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
              I   +   + N    E  +  +G L  + SD       +   F    +    +  V+
Sbjct: 278 LTSIGGNLLQTSPNSGP-EIIKTPVGKLATDFSD-------NSKGFGEFVQGALESSNVD 329

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L E+ + +I   +++  S+K+I   D++LQT+   ++
Sbjct: 330 LTEQFTDMITATRAFQASSKMITTGDEILQTITGLMR 366



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 10/44 (22%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L       +       +   I  NI N     +       +  
Sbjct: 1  MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDM 44


>gi|217959237|ref|YP_002337785.1| flagellar hook protein FlgE [Bacillus cereus AH187]
 gi|229138454|ref|ZP_04267043.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST26]
 gi|217065278|gb|ACJ79528.1| flagellar hook protein [Bacillus cereus AH187]
 gi|228644991|gb|EEL01234.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST26]
          Length = 407

 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/338 (9%), Positives = 75/338 (22%), Gaps = 11/338 (3%)

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
               +              T                   ++        IS    I+   
Sbjct: 72  MSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTE 131

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVP 268
                     S    +  +         M S      ++   + G               
Sbjct: 132 GQYVFAYPADSSTGNVDLSGIPGPLQVPMGSAIGGIRTSKGVVGGNIPADAKQITQELPV 191

Query: 269 KGKIKALLQIR-----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                    +R     D                   +F+E D   G  +           
Sbjct: 192 YDNAGNTWTMRVEFKQDGEHNYKYKVYMRNDSKKETAFNEVDGAGGEVKFDAVGKPNPVN 251

Query: 324 KDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
            + +       +         + +  +                  +A    ++  Y D  
Sbjct: 252 PEANIPFNGGTVKIDFSKLTNHPTEKTLAVTDVDGRAAATVKDCFIADGGYVMVKYSDGS 311

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            K      VA       L++       +   N +    + +  Q     +  S      V
Sbjct: 312 MKAAGQLAVAMFPNEGGLMKTGNG--NYTATNTTGILAMGVSGQNGAGKVRGSAQEGANV 369

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L  E   L+  ++ +  + K+I  +D++L  ++  ++
Sbjct: 370 DLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 59/282 (20%), Gaps = 38/282 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  +      D    N  
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYTDGTITLTGGKTQAAMEGNGFFVV-----GDSKAGNME 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     D++   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADSSTGNVDL-SGIPGPLQVPMGSAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +   +               +  +      +      + +    +     +  +    
Sbjct: 172 GVVGGNIPADAKQITQELPVYDNAGNTWTMRVEF-KQDGEHNYKYKVYMRNDSKKETAFN 230

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
             DG         ++ F+ +      +    I  +G  V  +
Sbjct: 231 EVDG------AGGEVKFDAVGKPNPVNPEANIPFNGGTVKID 266


>gi|327480022|gb|AEA83332.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri DSM
           4166]
          Length = 261

 Score = 76.6 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 2/183 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +    ++      +      +       F    + D      +  S  +  + Q  ++  
Sbjct: 74  ITGTQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSFHLSSDGQLVTSNG 133

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
           +  +   V                 +    +   +       A       L     N   
Sbjct: 134 YALEPAIVVPPETQTFTVGEDGTVSVTTVGNPQPQIIGNIQTADFINPAGLQAMGSNL-- 191

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +LE   S +  +          + ++      V++ EEL  +I  +++Y +++K+I   D
Sbjct: 192 FLETAASGAPQVSTPGLNGLGTVLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTAD 251

Query: 470 KML 472
           +ML
Sbjct: 252 QML 254



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/185 (7%), Positives = 31/185 (16%), Gaps = 33/185 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     ++   +       +I  N+ N     + R                        
Sbjct: 1   MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +   +          L      +      + F  +            
Sbjct: 61  ELPSGLQLGTGVRITGTQKI---FTTGSLQTTEQPLDMAINGRGFFQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                      S +      +   L   ++   E                  +   +I  
Sbjct: 112 VSYTRDGSFHLSSDGQLVTSNGYALEPAIVVPPETQTFTVGEDGTVSVTTVGNPQPQIIG 171

Query: 159 EISNL 163
            I   
Sbjct: 172 NIQTA 176


>gi|302343757|ref|YP_003808286.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM
           2075]
 gi|301640370|gb|ADK85692.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM
           2075]
          Length = 260

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I S  +        +          I+  +  +          N +   + +       +
Sbjct: 80  IWSQGDYQQTDNQLDVAIEGQGFFRIQKDNEDVYTRDGSFKLNNNRDIVDSNGNLLVPQM 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +         +     +     D          +        L+   RN   + E   S 
Sbjct: 140 TVPENATSVVIDPNGLVTALTADDEAVELGRIQLYTFPNPSGLMAIGRNY--FRESPASG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                      F  +++ +     V++ +E+  +I  +++Y  ++K I  +D+MLQT  +
Sbjct: 198 VAVPGDPGADQFGTLAQGFLEMSNVSVVDEMVNMIVAQRAYEANSKSITTSDQMLQTANQ 257

Query: 478 GVK 480
             +
Sbjct: 258 VKR 260



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 47/231 (20%), Gaps = 17/231 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           ++     A             I  N+ N +   + +                       +
Sbjct: 1   MMRSLYTAATGMTAQQLNLDVISNNLANVNTTGFKKSRADFEDLMYQTLRQPGAQQAGGQ 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            +    Q                    Q           +        N          +
Sbjct: 61  MIPTGKQVGMGVRPVAIQKIWSQGDYQQTDNQLDVAIEGQGFFRIQKDNEDVYTRDGSFK 120

Query: 109 DSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +      + + ++L    TV +NA  VV + N     +       +       +     
Sbjct: 121 LNNNRDIVDSNGNLLVPQMTVPENATSVVIDPNGLVTALTADDEAVELGRIQLYTFPNPS 180

Query: 167 LSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                  N       +          DQ   L Q   E+  +S +    N 
Sbjct: 181 GLMAIGRNYFRESPASGVAVPGDPGADQFGTLAQGFLEMSNVSVVDEMVNM 231


>gi|255026116|ref|ZP_05298102.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J2-003]
          Length = 198

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 58/197 (29%), Gaps = 13/197 (6%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVT 51
           L+ FN + +  + A        +NI N +   Y+R+    T             +   V 
Sbjct: 3   LSDFNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVK 62

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V   +           +   +                 +      N  P+  +     + 
Sbjct: 63  VTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAW 121

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            + +KN  +      ++ +        N     ++++      + +  I +L   + +L 
Sbjct: 122 AALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLG 181

Query: 172 VVNDAIKFKTASKHDAH 188
            +N AI    ++    +
Sbjct: 182 SINKAIGNAGSTHRTIY 198


>gi|171320708|ref|ZP_02909721.1| protein of unknown function DUF1078 domain protein [Burkholderia
           ambifaria MEX-5]
 gi|171094035|gb|EDT39133.1| protein of unknown function DUF1078 domain protein [Burkholderia
           ambifaria MEX-5]
          Length = 388

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/274 (8%), Positives = 68/274 (24%), Gaps = 9/274 (3%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
              R +   +       TL          +   +  V   ++ +       S +      
Sbjct: 116 VTERTSGLKLATLDATGTLAPISLAQRQLDPPCATRVVRFTDNLSPGSTDFSVSDVEIYD 175

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
               K +L++  +          ++          +         +P          L +
Sbjct: 176 ANGAKHVLKVSFAQDTGVMPGRWKVTVADRDGTPLQIGTLQFHGGIPEPGQDRIDVTLPS 235

Query: 329 KLCQGISETICVNPQY--RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                  +       +   +  +            +    N+ G   L   Y +    + 
Sbjct: 236 SQLTVTLDFSEGVTAFSAGATSTLRMSKQDGYAAGMLASMNIDGDGQLALRYSNGQIGHA 295

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH--DLHMKSQVVFNHISESYSNTVGVNL 444
               +A       L+            + S             +   +         V+L
Sbjct: 296 GAVALARFADPQRLVRLGAGLF-----DASHLPPPRYAKSGDPLVGQLRSGAVEASNVDL 350

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             E   LI +++ +  ++++I  +++M+  L + 
Sbjct: 351 SGEFGQLILIQRGFQAASQVISTSNEMIMQLFQM 384



 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/291 (7%), Positives = 60/291 (20%), Gaps = 28/291 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52
           +L       +     S+   +I  N+ N +   +           +            + 
Sbjct: 1   MLDSIYIGMSGLAAYSKGLQTIGDNVANLNTPGFKSSAPRFQDLCDGRPTAREGKRSGSG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V       N     L   +  +          AL++        +        +   + +
Sbjct: 61  VAYAHATLNFRQGELRGSTGQLDLAIDGDGLLALRD-------GDTIRYARTGQFHIADD 113

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            +    +   L    +D    +              R          +          T 
Sbjct: 114 GFVTERTS-GLKLATLDATGTLAPISLA-------QRQLDPPCATRVVRFTDNLSPGSTD 165

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT---SDGTTLFE 229
            + +      +    H            +     ++   R+   + + T     G     
Sbjct: 166 FSVSDVEIYDANGAKHVLKVSFAQDTGVMPGRWKVTVADRDGTPLQIGTLQFHGGIPEPG 225

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
               D+             S  +       +S    +   G    +L   +
Sbjct: 226 QDRIDVTLPSSQLTVTLDFSEGVTAFSAGATSTLRMSKQDGYAAGMLASMN 276


>gi|284007173|emb|CBA72457.1| flagellar basal-body rod protein FlgG [Arsenophonus nasoniae]
          Length = 260

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 3/212 (1%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDL 326
             G + +   +  S + +         + L    +        +       F    + D 
Sbjct: 51  QPGSLTSEQTLSPSGLQLGTGVRPIATQRLHSQGNLSQTNGSTDVAIKGQGFFHIQLPDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +   +  +  +  N Q  +   F      V  +    V         +    +S  +  
Sbjct: 111 TDAYTRDGAFQVDQNNQRVTAGGFAVVPPIVLPETALKVTISHDGIVSVVIPGNSEPQQV 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   +LE N S               + + Y  T  VN+ E
Sbjct: 171 GQLALTTFVNETGLESIGENL--YLETNSSGVPVETAPGVNGAGLLYQGYVETSNVNVAE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EL  +I+ +++Y I++K +  +D+MLQ L++ 
Sbjct: 229 ELVSMIQTQRAYEINSKAVSTSDQMLQRLMQL 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/145 (6%), Positives = 25/145 (17%), Gaps = 23/145 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +        I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGSLTSEQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHY 103
            SP  + + T                   + Q           +                
Sbjct: 61  LSPSGLQLGTGVRP----IATQRLHSQGNLSQTNGSTDVAIKGQGFFHIQLPDGTDAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVI 128
               +    +         +   ++
Sbjct: 117 DGAFQVDQNNQRVTAGGFAVVPPIV 141


>gi|83647171|ref|YP_435606.1| flagellar basal body rod protein FlgG [Hahella chejuensis KCTC
           2396]
 gi|83635214|gb|ABC31181.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396]
          Length = 261

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 49/185 (26%), Gaps = 2/185 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V      E      +       F    + D      +     +  +    +   F  
Sbjct: 77  TQKVFSEGNLEVTEQPLDIAINGRGFFQILMPDGTISYTRDGQFHLNSDGDVVTANGFPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           + G        ++         +     +                  L     N   + E
Sbjct: 137 EPGITVPDGALHLTISTDGVVSVTVAGTATPTQVGNINTVDFINPAGLEAIGNNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S               + +    T  V + EE+  +I  +++Y ++ K++   D+ML
Sbjct: 195 TAASGDPQEGTPGLAGLGTVEQGMVETSNVEIVEEMVNMITTQRAYEMNAKVVTTADQML 254

Query: 473 QTLLE 477
           Q + +
Sbjct: 255 QYITQ 259



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/246 (6%), Positives = 48/246 (19%), Gaps = 37/246 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++           +I  N+ N +   + R   +                    
Sbjct: 1   MHGALWVSKTGLAAQDTALKTISNNLANVNTTGFKRDRAVFQDLLYQIKRQPGGQSSQDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +       +  L      +      + F  +            
Sbjct: 61  QLPSGLQLGTGVRVVGTQKV---FSEGNLEVTEQPLDIAINGRGFFQIL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155
                  +   + +      +   L   +      +   +      +  V          
Sbjct: 112 ISYTRDGQFHLNSDGDVVTANGFPLEPGITVPDGALHLTISTDGVVSVTVAGTATPTQVG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
               +  +        + N+  +   AS            +   +   +   +  +    
Sbjct: 172 NINTVDFINP-AGLEAIGNNLFRETAASGDPQEGTPGLAGLGTVEQGMVETSNVEIVEEM 230

Query: 216 DMVVYT 221
             ++ T
Sbjct: 231 VNMITT 236


>gi|292669970|ref|ZP_06603396.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC
           43541]
 gi|292648382|gb|EFF66354.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC
           43541]
          Length = 275

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 60/194 (30%), Gaps = 3/194 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           + +DE+A   I    +      +       +              G  +         ++
Sbjct: 84  SAVDEIATDHIQGALQTTGNTYDFGISGEGYFVVNTPQGPRYTRDGTWKLDSDRRMVTTD 143

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
              L DG ++ +    +   ++G   +       +  +      +A       L    +N
Sbjct: 144 GYLLADGITIGENAPSDSITISGDGRVSYREAGQTQQQEAGQITLARFVNPAGLTAIGKN 203

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              ++  + S               +++       V + EE+  +I  +++Y  ++K I 
Sbjct: 204 L--FVVSDASGEAIESNPGVDGAGTLTQGTLEMSNVQIVEEMVNMIVSQRAYESNSKAIT 261

Query: 467 FTDKMLQTLLEGVK 480
            +D ML+      +
Sbjct: 262 TSDSMLEIANTLKR 275



 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 44/203 (21%), Gaps = 16/203 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +     ++    I  N+ NA    Y R D                 E + M
Sbjct: 1   MWRGLYIAASGMITETKHTDMIANNLANAATTGYKRDDMAI-------------REFEPM 47

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + ++ +S+               + + A           + ++       +   + + 
Sbjct: 48  LLRRINDYSADADVTSFKGF---RVDGLGAPRVGRLGLGSAVDEIATDHIQGALQTTGNT 104

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               +      VV                      +               N      T 
Sbjct: 105 YDFGISGEGYFVVNTPQGPRYTRDGTWKLDSDRRMVTTDGYLLADGITIGENAPSDSITI 164

Query: 183 SKHDAHDFLDQRDVLLQKISEII 205
           S      + +      Q+  +I 
Sbjct: 165 SGDGRVSYREAGQTQQQEAGQIT 187


>gi|261344140|ref|ZP_05971784.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM
           4541]
 gi|282567732|gb|EFB73267.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM
           4541]
          Length = 260

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 63/187 (33%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+       K     +       F+   + D  +   +  +     + Q  ++  + 
Sbjct: 76  ATMRIHSQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQ 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                +  +   ++         +  Y D+  +      +     +  L     N   ++
Sbjct: 136 VVPAIMIPENANSLSIARDGTVSVTVYGDNQPQQIGQITLTTFINDAGLESMGENL--YM 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +             + +    T  VN+ EEL  +I+ +++Y I++K +  +D+M
Sbjct: 194 ETASSGAPKESAPGTNGAGLLYQGMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQRLTQL 260



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 13/44 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A+   +        I  N+ N     + R+  +    
Sbjct: 1  MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44


>gi|224825166|ref|ZP_03698272.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002]
 gi|224602837|gb|EEG09014.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002]
          Length = 260

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 58/215 (26%), Gaps = 2/215 (0%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
               P  ++     +   +     + +   AR+      E      +       F     
Sbjct: 48  TLRQPGSQLTNGNSLPTGLQVGTGSTVVATARIHSQGNLESTEQPLDLAINGDGFFRVQQ 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            D      +        N    ++  +L D           +               +  
Sbjct: 108 PDGTIAYTRNGEFRRNENGDIVNSSGYLLDPAINIPANATGITISEAGVVQYTQPNSTAP 167

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                  +        L    +N   +L+   S        +      +   +     VN
Sbjct: 168 TTAGTIQLTTFINPQGLQSIGQNL--YLQTQASGDPQDGDPNTDGRGSVRSGFLEDSNVN 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + EEL  +I  ++S+ ++++ I   D+MLQ + + 
Sbjct: 226 VTEELVNMITAQRSFEMNSRAIKTADEMLQRIAQL 260



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 56/244 (22%), Gaps = 37/244 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +++  Q   +  N+ N++ K + +   +                    
Sbjct: 1   MMRALYIAKTGMDSSQFQLDVVSNNLANSNTKGFKKGHAVFEDLYYQTLRQPGSQLTNGN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                       TVV     +       L +    +        F  +++          
Sbjct: 61  SLPTGLQVGTGSTVVATARIHSQ---GNLESTEQPLDLAINGDGFFRVQQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                  + R +      N S  +L   +   A       + +                 
Sbjct: 112 IAYTRNGEFRRNENGDIVNSSGYLLDPAINIPANATGITISEAGVVQYTQPNSTAPTTAG 171

Query: 159 EI---SNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            I   + +     +    N  +    +    D     D R  +     E   ++      
Sbjct: 172 TIQLTTFINPQGLQSIGQNLYLQTQASGDPQDGDPNTDGRGSVRSGFLEDSNVNVTEELV 231

Query: 215 NDMV 218
           N + 
Sbjct: 232 NMIT 235


>gi|222053732|ref|YP_002536094.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32]
 gi|221563021|gb|ACM18993.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32]
          Length = 262

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 63/252 (25%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               + +N + + +      +                ++      +    +         
Sbjct: 11  GMQAQQLNIDVVANNLANVNTTGFKKSRADFHDLMYQSMKTSGAPSTNATQIPTGIQVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                A   I +           +          I+  D       +     + Q R   
Sbjct: 71  GSKPAAVTKIFTTGNVTQTGNELDVAIEGDGFFQIQMPDGSTEYTRAGAFKKDSQGRVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S                    G    ++              +     +      ++   
Sbjct: 131 SEGYPLLPEVVIPNNTTSITIGNDGTVSVIQSGQTSPTSVGTIQLATFSNPAGLSSQGHN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + E   S +       Q     +S+ Y     V++ EE+  +I  +++Y I++K +   
Sbjct: 191 LFKETESSGAATTGTSGQNGIGTLSQGYLEMSNVSVAEEMVNMIVGQRAYEINSKAVQAA 250

Query: 469 DKMLQTLLEGVK 480
           D+MLQT     +
Sbjct: 251 DEMLQTANNLKR 262



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/240 (6%), Positives = 55/240 (22%), Gaps = 29/240 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A +           +  N+ N +   + +                       T
Sbjct: 1   MIRALWTAASGMQAQQLNIDVVANNLANVNTTGFKKSRADFHDLMYQSMKTSGAPSTNAT 60

Query: 45  ISPENVTVVTQR---SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V       +  K      +    + +        F  ++          ++  
Sbjct: 61  QIPTGIQVGLGSKPAAVTKIFTTGNVTQTGNELDVAIEGDGFFQIQ------MPDGSTEY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +          L   V+  +N   +    + +   +Q  +        ++
Sbjct: 115 TRAGAFKKDSQGRVVTSEGYPLLPEVVIPNNTTSITIGNDGTVSVIQSGQTSPTSVGTIQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++         +  ++  K   +S         Q  +       +   +  V      ++
Sbjct: 175 LATFSNPAGLSSQGHNLFKETESSGAATTGTSGQNGIGTLSQGYLEMSNVSVAEEMVNMI 234


>gi|297182936|gb|ADI19085.1| flagellar basal body rod protein [uncultured delta proteobacterium
           HF0070_15B21]
          Length = 262

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 59/192 (30%), Gaps = 2/192 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +     ++      E      +       F      +      +     I    +  +N 
Sbjct: 73  KFIGTEKIHTQGNLENTGNDLDLSIDGHGFFQILQPNGIVGYSRDGHFNIDGMGRLVTND 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L D      +    ++        +    ++  +      +A       L    +N  
Sbjct: 133 GMLLDPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSIQLARFQNPAGLTPLGKNL- 191

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            ++    S +  +          +++ +     V+L EE+  +I  +++Y +++K I   
Sbjct: 192 -YVSTPASGNAIVDAPGASSMGTLTQGFLERSNVSLVEEMVNMITSQRAYEVNSKAIQSA 250

Query: 469 DKMLQTLLEGVK 480
           D+ML+     V+
Sbjct: 251 DEMLKNTNNLVR 262



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 4/44 (9%), Positives = 11/44 (25%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A        +   +   N+ N +   Y +        
Sbjct: 1  MMRALYTAATGMAAQQRNIDTTANNLANVNTTGYKKSKVHFQDL 44


>gi|183220919|ref|YP_001838915.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911015|ref|YP_001962570.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775691|gb|ABZ93992.1| Endoflagellar distal basal body rod protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779341|gb|ABZ97639.1| Flagellar basal-body rod protein FlgG (Distal rod protein)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 265

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 3/170 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                 F         +    G  +         SN   L     + +  + N   ++  
Sbjct: 98  TGEMAFFKIQMPDGTFSYSRDGSFKIDSNQQVVTSNGYLLEPPIILPENAILNTLMVSEE 157

Query: 372 PDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
            ++     +           +        L    +N   + E   S      M SQ  + 
Sbjct: 158 GEVTVKIGNDIRPTTIGQLELYRFVNPAGLQAVGKNL--FRETVASGQEIPGMPSQEGYG 215

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + + +     V + EE+  +I  +++Y  ++K I  +D ML T +   +
Sbjct: 216 SVLQGFLEMSNVKIVEEMVNMIVAQRAYESNSKTIQTSDNMLSTAIGLKR 265



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/156 (6%), Positives = 29/156 (18%), Gaps = 26/156 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++                  ++  N+ N +   + +                        
Sbjct: 1   MMRSLWTGATGMIAQQFHIDTVANNLANVNTTGFKKNRVDFEDLVYQHQVLAGTPATSVS 60

Query: 47  --PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V V       +  K        A  + +      +      +M            
Sbjct: 61  EIPTGVNVGHGVKVAATQKLFEIGSFQATGNKLDLALTGEMAFFKIQM-----PDGTFSY 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                 +          +  +L   +I     ++  
Sbjct: 116 SRDGSFKIDSNQQVVTSNGYLLEPPIILPENAILNT 151


>gi|23015641|ref|ZP_00055411.1| COG1749: Flagellar hook protein FlgE [Magnetospirillum
           magnetotacticum MS-1]
          Length = 804

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/404 (9%), Positives = 92/404 (22%), Gaps = 9/404 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54
           MSL        +   + S    +I  NI N +   Y                  + +   
Sbjct: 1   MSLYGALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTSYSPGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSL 111
            +S+ +   D    L A + +       Q    +          N           +   
Sbjct: 61  VQSKPRAAIDSQGLLQATTESTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDK 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           E Y +N+S   +    +           T           A K+ +     + + +    
Sbjct: 121 EGYLQNVSGFYVQGWPLQPTNNNTLAKPTELTIDGNTYMKAYKQSDGTFHYVNQNIINPQ 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
                         D    +     L    +     ST     +   V   D        
Sbjct: 181 ETKSLNLKTIGGTADQTTQIKMGANLPSGDTIYNPGSTSSSGYHQTSVLIYDSLGDTHNF 240

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +      N +   ++SN   ++  + +    S                 V        
Sbjct: 241 NVNWTKTNSNQWDAETKSNFFSVNTTLTNVKTNSTAALTIKGEATGNTTGGVKTLVAANS 300

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                   S +   P+     ++     A  +  + N      + +      Y S+    
Sbjct: 301 TAMGYFASSGAIAMPVNTLGASLAASRQALPLGSVLNISGASGTASTNNGDWYVSSQVAT 360

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
               +        ++       +   +  + ++  +    A + 
Sbjct: 361 TPAITDQAATSATIEIGGTTTSITGTFTAAGSQIDLGVTPASLG 404


>gi|103488389|ref|YP_617950.1| flagellar basal body rod protein FlgG [Sphingopyxis alaskensis
           RB2256]
 gi|98978466|gb|ABF54617.1| Flagellar basal-body rod FlgG [Sphingopyxis alaskensis RB2256]
          Length = 261

 Score = 76.2 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 62/229 (27%), Gaps = 3/229 (1%)

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
               +     D     +     + +    +  + R +        +       I +    
Sbjct: 28  ANVNTTGFKRDRASFETLSYQLMTQAGAPSTAENRYATGLNLGTGVALNGTARIDTQGTF 87

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                  +          ++  D ++    +      P         +      +     
Sbjct: 88  QTTGNGLDVAIDGAGYFQVELPDGRIGYTRAGNFGRAPDGTIVTPDGKPLTPAIQIPEDA 147

Query: 365 VKNLAG-YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
                G    +     D          +A  +    L     N +  +E   S +  +  
Sbjct: 148 GNVSIGLDGTVSATAADGTALELGRIEIARFSNPAGLQAIGGNML--VETQASGAPLVGG 205

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             +     +         VN+ EEL  +I+ +++Y +++K+I  TD+M+
Sbjct: 206 AGEEGRGTLRGGMLEGSNVNVVEELVDMIETQRAYEVNSKMISATDEMM 254



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/147 (7%), Positives = 27/147 (18%), Gaps = 34/147 (23%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MSL    + A+   +  S +   I  N+ N +   + R                      
Sbjct: 1   MSL-GALHVARTGLDAQSFRMQVIANNLANVNTTGFKRDRASFETLSYQLMTQAGAPSTA 59

Query: 46  ---------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                        V +      +            + +        +  ++         
Sbjct: 60  ENRYATGLNLGTGVALNGTARID---TQGTFQTTGNGLDVAIDGAGYFQVE------LPD 110

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDIL 123
                        + +          L
Sbjct: 111 GRIGYTRAGNFGRAPDGTIVTPDGKPL 137


>gi|170758711|ref|YP_001787975.1| flagellar hook protein flgE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405700|gb|ACA54111.1| flagellar hook protein flgE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 345

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/334 (8%), Positives = 81/334 (24%), Gaps = 19/334 (5%)

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +   I+N      +   +                  +      +++   + ++ I     
Sbjct: 22  VGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIYTKFT 81

Query: 216 DMVVYTSD---GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
              + T+       +       +    + S T         +    +     +       
Sbjct: 82  TGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEATGDVQAGSIDGKSSTMDISFTR 141

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                + D    +  +    M   +             +      F+    K L      
Sbjct: 142 DGSFTLDDEGNLLTSDGFRIMGYAMTDGSGTSLAYDAGTGEAKMAFVDADSKALKAADDS 201

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                + +  +   +   +R              ++     L+    +  +       +A
Sbjct: 202 KKLIPLRIPDEIDVDGKKVRVQS----------FSIDKDGLLVASLVNGKSAALGQVAMA 251

Query: 393 GINTNVTLLEYARNSIGWLEKNRSD------SHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                  L +  +N       +               ++   +  +         V+L E
Sbjct: 252 SFKNEGGLEKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGMIEMSNVDLAE 311

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E + +I   +++    K+I   D++LQ L+   +
Sbjct: 312 EFTEMIVANRAFQACGKMITTGDEILQELVNLKR 345



 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/166 (5%), Positives = 29/166 (17%), Gaps = 28/166 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              +      +        F  +           + 
Sbjct: 61  GTNPRQVGLGVQVAGI---YTKFTTGNMQTTGRNLDMAVDGPGFFIV--GKGDITSQTSI 115

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
            T     ++        +  +    +      ++      +    +
Sbjct: 116 ITEATGDVQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRI 161


>gi|148380612|ref|YP_001255153.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC
           3502]
 gi|153934204|ref|YP_001384898.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC
           19397]
 gi|153936013|ref|YP_001388367.1| flagellar hook protein flgE [Clostridium botulinum A str. Hall]
 gi|148290096|emb|CAL84215.1| flagellar hook protein [Clostridium botulinum A str. ATCC 3502]
 gi|152930248|gb|ABS35748.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC
           19397]
 gi|152931927|gb|ABS37426.1| flagellar hook protein flgE [Clostridium botulinum A str. Hall]
          Length = 345

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 81/326 (24%), Gaps = 21/326 (6%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  +   F  Q       +S+ +  +T    N         G  +        
Sbjct: 20  DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIFTK 79

Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF-QNQ 289
                   T  +     +    FI G    ++Q S + +G   A     D        + 
Sbjct: 80  FTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEGTDDAQAGSIDGKSSTMDISF 139

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             + +  L    +                        D    +     +  + +      
Sbjct: 140 TRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYDAGTGEAKMAFVDADSKALKAAD 199

Query: 350 FLRD---------GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             +               KK      ++     L+    +  +       +A       L
Sbjct: 200 DSKKLIPLRIPDEIEVEGKKVRVQSFSIDKDGLLVASLVNGKSAALGQVAMASFKNEGGL 259

Query: 401 LEYARNSIGWLEKNRSD------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
            +  +N       +               ++   +  +         V+L EE + +I  
Sbjct: 260 EKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGMIEMSNVDLAEEFTEMIVA 319

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++    K+I   D++LQ L+   +
Sbjct: 320 NRAFQACGKMITTGDEILQELVNLKR 345



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/209 (6%), Positives = 36/209 (17%), Gaps = 46/209 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE--------------- 84
                     V V              +      +        F                
Sbjct: 61  GTNPRQVGLGVQVAGI---FTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIIT 117

Query: 85  -----ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139
                A    +       +             E          +    + +       ++
Sbjct: 118 EGTDDAQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYD 177

Query: 140 TSAREVQKIRADADKEIELEISNLRRFLS 168
               E +    DAD +      + ++ + 
Sbjct: 178 AGTGEAKMAFVDADSKALKAADDSKKLIP 206


>gi|229160717|ref|ZP_04288709.1| Flagellar hook protein flgE [Bacillus cereus R309803]
 gi|228622732|gb|EEK79566.1| Flagellar hook protein flgE [Bacillus cereus R309803]
          Length = 407

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/325 (8%), Positives = 73/325 (22%), Gaps = 11/325 (3%)

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                 T V                 ++        IS    I+                
Sbjct: 85  TLTGGKTQVAMEGNGFFVVGDSKAGNMEFTRKGTFTISSDYYITNTEGQYVFAYPADPST 144

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVPKGKIKALLQIRDS 281
             +  +         M S      ++   + G                        +R  
Sbjct: 145 GNVDLSGIPGPLQIPMGSAIGGIRTSKGIVGGNIPADAKHITQELPVYDDAGNTWTMRME 204

Query: 282 VVPIFQNQLDEMARVLIGSFSE------KDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                ++      ++   S  E      +        +  G       +         + 
Sbjct: 205 FTQDGEHNYKYTVKMRNDSKKETEFHEVQGAAGNVKFDAVGKPDPINPEANIPFNGGTVK 264

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +     + +  +                  +A    ++  Y D   K      V    
Sbjct: 265 IDLSKLTNHPTEKTIAVTNVDGRPAATVKDCFMADGGYVMVKYSDGSMKAAGQLAVGMFP 324

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L++       +   N +    L +  Q     +         V+L  E   L+  +
Sbjct: 325 NEGGLMKTGNG--NFTATNTTGILALGVSGQNGAGKVRGGAQEGANVDLSVEFVDLMLYQ 382

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  + K+I  +D++L  ++  ++
Sbjct: 383 RGFQGNAKVIKISDEVLNEVVNLIR 407



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/386 (8%), Positives = 74/386 (19%), Gaps = 38/386 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     + +  N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSISGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSVGAKGDERYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  +      D    N  
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQVAMEGNGFFVV-----GDSKAGNME 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     D +   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFTISSDYYITNTEGQYVFAYPADPSTGNVDL-SGIPGPLQIPMGSAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +   +                  +      +      + +    +     +  +   +
Sbjct: 172 GIVGGNIPADAKHITQELPVYDDAGNTWTMRMEFTQ-DGEHNYKYTVKMRNDSKKETEFH 230

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
              G         ++ F+ +      +    I  +G  V  +          K +     
Sbjct: 231 EVQG------AAGNVKFDAVGKPDPINPEANIPFNGGTVKIDLSKLTNHPTEKTIAVTNV 284

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
              P    +   MA          D     +  +      +    +        +     
Sbjct: 285 DGRPAATVKDCFMADGGYVMVKYSDGSMKAAGQLAVGMFPNEGGLMKTGNGNFTATNTTG 344

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVK 366
                 +            +   NV 
Sbjct: 345 ILALGVSGQNGAGKVRGGAQEGANVD 370


>gi|58426792|gb|AAW75829.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 341

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 87/314 (27%), Gaps = 13/314 (4%)

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             + +   S     D L  R      +++ + I +  RN +  +  T +           
Sbjct: 32  PPLPYAARSNPTPRDPLHTRQKSDADLAQHVHIPSRARNTSPGL--TRNRVMNQALWVAK 89

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---------KGKIKALLQIRDSVVPI 285
              +   +      +N    +      ++ +             G   A  Q+   +   
Sbjct: 90  TGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQLG 149

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
              ++    +       ++   A +       F    + D  +   +  +  I    Q  
Sbjct: 150 TGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGQLV 209

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +N  +    G    +   ++         +     +  +      +        L     
Sbjct: 210 TNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPSGLQSKGE 269

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   ++E   S              +  +       VN  EEL  +I+ +++Y ++ K I
Sbjct: 270 NL--FVETTASGPAQNGTPGLNGLGNTVQGALEGSNVNTVEELVSMIETQRAYEMNAKAI 327

Query: 466 MFTDKMLQTLLEGV 479
             TD ML  L   V
Sbjct: 328 STTDAMLGYLNNNV 341



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/211 (8%), Positives = 43/211 (20%), Gaps = 36/211 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + I  N+ N +   + R                        
Sbjct: 81  MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 140

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV+          +       A+      + F  ++           
Sbjct: 141 QLPTGLQLGTGVRVVSTFKGFDQGSQQQ---TGRALDVMVNGRGFFEVQ------MPDGT 191

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155
           S        + + +      S   L   +            N  T +  +    A  +  
Sbjct: 192 SAYTRDGTFQINAQGQLVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 251

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +     +    N  ++   +    
Sbjct: 252 ALTLTDFINPSGLQSKGENLFVETTASGPAQ 282


>gi|322432989|ref|YP_004210238.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9]
 gi|321165216|gb|ADW70920.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9]
          Length = 412

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/475 (10%), Positives = 108/475 (22%), Gaps = 66/475 (13%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
           + F    +    +  Q  ++  N+ N D   +  ++   +                    
Sbjct: 2   SFFGVPLSGLIASQSQLQAVSNNLANLDTVGFKDQNVNFS---------------DVFAQ 46

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L+  S+   Q  L  +        +            ++   +               
Sbjct: 47  SSLNNGSNDPVQTGLGVNASQTTSDFTDGAVSATGIASNMALTGNGFFVTKTATGATAYT 106

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           +               S+ ++     D           +        +         AS 
Sbjct: 107 RAG--------DFTKNSSGQLVTPSGDLVMGYPAANGVVNTSGELQPIQIGTGTVIPASA 158

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                     +      S     +          VY S G     TV          SY+
Sbjct: 159 TTKFTISANLNSSAAVGSTFASPT---------PVYDSLGDAHTLTVNYTKTGTNTWSYS 209

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           V   +         V+S   +    G + +        VP   +    M      + S  
Sbjct: 210 VDLPTADTGAATTTVASGTLNFDTSGNLTSPTGSVAINVPTLTDGAASMNFAWNLTDSSG 269

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           +P    +  V     +    +    L               SN S     G V+     N
Sbjct: 270 NPTLTQTSLVSANSTSTQNGNASGTLTGYSIAADGTVEGTFSNISNPVALGQVAVASFAN 329

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            + L    +                                    +     S +  +   
Sbjct: 330 TQGLLRTGNND----------------------------------YQATVGSGAASVGTA 355

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                  I+     +  V++  E + +I  +Q+Y  + K +   D++ Q  L+ +
Sbjct: 356 ETGGRGVITGGSVESSNVDVAAEFAKMIVAQQAYQANAKTVTTFDQISQATLQMI 410


>gi|157363239|ref|YP_001470006.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO]
 gi|157313843|gb|ABV32942.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO]
          Length = 261

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 6/214 (2%)

Query: 271 KIKALLQIRDSVVPIFQ---NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           K        +S +P      +     A   I S    +      +          ++  D
Sbjct: 50  KNAGTPTAVNSTIPTGIYFGHGTRLSATTKIFSLGNMEYTGNALDVAITGDGFFQVQLQD 109

Query: 328 NKLCQGISETICVNPQ-YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +       T  V+ +      + L    ++         N++          D   +N 
Sbjct: 110 GRTAYTRDGTFKVDSEGRVVTSNGLALIPNIVVPADAVAINISPDGIFSAEMQDGTVQNL 169

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   +LE   S        +Q  F  + + Y     V++ +
Sbjct: 170 GTITLVRFVNPSGLKAVGDNL--YLETTASGEPIEGTPNQDGFGALQQGYLEKANVDVVK 227

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E+  +I  +++Y ++ + I   D MLQT+    +
Sbjct: 228 EMVDMITAQRAYELNARAIQTADNMLQTVSTLKR 261



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/208 (8%), Positives = 50/208 (24%), Gaps = 15/208 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54
           ++     A         +  +I  N+ N D   Y +               +     V +
Sbjct: 1   MMVSLYSAATGMWAQQYKLDTISNNLANVDTTGYKKVRAEFQDLVYQYYKNAGTPTAVNS 60

Query: 55  QRSENKNMFDKVLHAHSS------AIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKL 107
                         + ++       +             +        +  +        
Sbjct: 61  TIPTGIYFGHGTRLSATTKIFSLGNMEYTGNALDVAITGDGFFQVQLQDGRTAYTRDGTF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +   E      +   L   ++  A+ V  N +       +++    + +           
Sbjct: 121 KVDSEGRVVTSNGLALIPNIVVPADAVAINISPDGIFSAEMQDGTVQNLGTITLVRFVNP 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRD 195
           S L  V D +  +T +  +  +    +D
Sbjct: 181 SGLKAVGDNLYLETTASGEPIEGTPNQD 208


>gi|291276427|ref|YP_003516199.1| flagellar basal-body rod protein [Helicobacter mustelae 12198]
 gi|290963621|emb|CBG39453.1| flagellar basal-body rod protein [Helicobacter mustelae 12198]
          Length = 262

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +A++      ++     +       F    + D      +  +  +  N    ++  + 
Sbjct: 76  AIAKMFSQGSPKETENNLDMAITGKGFFQVRLPDGTTAYTRSGNFKLDDNGNVVTSEGYA 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                   +    +         +    +  +       +A       L     N   +L
Sbjct: 136 LIPQITVPQDATQINIGNDGTVSVVQGNNGGSNTIGQIELADFINPAGLHSLGDNL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + S +    +        I + +     V L EE++ LI  +++Y  ++K I   D M
Sbjct: 194 NTSASGAPITGVAGTNGMGQIKQGFLELSNVRLVEEMTDLITGQRAYEANSKSIQTADAM 253

Query: 472 LQTLLEGVK 480
           LQT+    +
Sbjct: 254 LQTVNGLKR 262



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 50/211 (23%), Gaps = 29/211 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   Y R+                       
Sbjct: 1   MMRSLYSATTGMLGQQLQIDTTSNNIANVNTVGYKRQRAEFNDLFYQNLQYAGTATSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K           + +      + F  +            +  
Sbjct: 61  LSPTGIEVGLGVRPGAIAKMFSQGSPKETENNLDMAITGKGFFQV------RLPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +              L    TV  +A ++    + +   VQ     ++   ++E
Sbjct: 115 TRSGNFKLDDNGNVVTSEGYALIPQITVPQDATQINIGNDGTVSVVQGNNGGSNTIGQIE 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
           +++        ++ ++     +AS       
Sbjct: 175 LADFINPAGLHSLGDNLYLNTSASGAPITGV 205


>gi|251780251|ref|ZP_04823171.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084566|gb|EES50456.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 366

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 77/272 (28%), Gaps = 21/272 (7%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T    +    +  S    L      +I + +  ++T+  E N +  DG  V         
Sbjct: 116 TGTGADAKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADGYRVMGYLLKDGD 175

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            GK       +D   P        +A  +         +   ++          +    +
Sbjct: 176 DGKPSVAWGEKDGDAP--------VANYVDADSKNLHAVGEGAQLNTLKIPDKVLAPKRD 227

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +  +E + V          ++         +  V        L      +F      
Sbjct: 228 ADGKPTAEFVEVP---------VKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGL 278

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             + G     +           +             +   F    +    +  V+L E+ 
Sbjct: 279 TSIGGNLLQTSPNSGPEIIKTPVG----KLATDFTDNSKGFGEFVQGALESSNVDLTEQF 334

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I   +++  S+K+I   D++LQT+   ++
Sbjct: 335 TDMITATRAFQASSKMITTGDEILQTITGLMR 366



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 35/149 (23%), Gaps = 9/149 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N     +       +                  
Sbjct: 1   MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLY--------QNASEA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +   Q  L     ++ ++M   +  +   +  +    D     SK      
Sbjct: 53  TAPTSTKGGTNAKQVGLGSQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYA 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
             KT    A+       +++ ++     +
Sbjct: 113 ADKTGTG-ADAKNTIGISTSGKLTGGGEN 140


>gi|254519414|ref|ZP_05131470.1| flagellar hook protein [Clostridium sp. 7_2_43FAA]
 gi|226913163|gb|EEH98364.1| flagellar hook protein [Clostridium sp. 7_2_43FAA]
          Length = 885

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 70/263 (26%), Gaps = 18/263 (6%)

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
           ++ F+   +         +   G   S+          I        +     +N  D +
Sbjct: 625 ELTFDAGAALNGYKFQIGVISPGTKTSATIDEKGKTITING--DFVTTNAITAKNIQDAL 682

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ------YRSN 347
            R L G    +   A       G  +++               +I           Y   
Sbjct: 683 TRALEGKGIAQGIAATGKPIEIGGVVSEETNGGTPIESMNSDGSINFVDATKDLKSYDGE 742

Query: 348 PSFLRDGGSVSKKFL-----WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              L+    V               +     +     D          +A       L +
Sbjct: 743 LKTLKIPDKVRIPGTDIELRVKTYTIDKNGVINGVLEDGRVAALGQLAMASFKNPEGLTK 802

Query: 403 -----YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
                Y+ +        +S    L+  +   +    +       V+L E+ + +I   ++
Sbjct: 803 LGGNLYSSSVNSGDAIIKSGVGTLNDDNSNGYGDNLQGMLEMSNVDLSEQFTDMIVSSRA 862

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           +  + K+I   D++LQ ++   +
Sbjct: 863 FQAAGKMITTGDEILQDIINLKR 885



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 68/275 (24%), Gaps = 13/275 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N    ++       +                + 
Sbjct: 7   MLRSMYSGISGMKVNQTKLDVIGNNISNVGTTSFKSSRARFSDMLS--------QNVSDA 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                +       Q  L     ++  +M+            ++   D     SK  +   
Sbjct: 59  MAPSNNQGGVNASQVGLGVQLASIDSVMTQGMMQPTGRQLDVAIDGDGFFMVSKGPAIYD 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADAD-----KEIELEISNLRRFLSELTVVNDAI 177
               V   A        + +    +I    D      E    ++     +   ++ ND  
Sbjct: 119 GTLEVNHRAGAHNITSQSLSNSGSEIMYSRDGSFILDEQGNLLTGDGFRVMGYSLTNDDS 178

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
             +   +          D      S++ G   ++ +     V +++     + +  + +F
Sbjct: 179 SQEATGQVPNAVSTAGLDFRFGPGSQLNGFKVVLGSVGPGTVTSANVNKAEKLIIVNGDF 238

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
               + T     + I         +Q   V    I
Sbjct: 239 SSTGALTPAQVESAINKGLSSAGISQQMFVSGKPI 273


>gi|226313061|ref|YP_002772955.1| flagellar hook protein FlgE [Brevibacillus brevis NBRC 100599]
 gi|226096009|dbj|BAH44451.1| flagellar hook protein FlgE [Brevibacillus brevis NBRC 100599]
          Length = 272

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 6/233 (2%)

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
             N             G+   +  + A +   D+V          +   L         +
Sbjct: 46  SQNVQGAGAPTAGGKGGTNPTQIGLGASIASIDTVFSAGSPMTTNLPTDLSIEGDGFFMV 105

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
           + + E     +   G    D +     S+ + +     +     ++ G VS     +   
Sbjct: 106 SPD-EGATIYYTRAGNFTRDAEGYLVNSQGMKLMNTDPAAIQISQNDGVVSYSIGKDGVI 164

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                       ++       +P         L     N++     +        +    
Sbjct: 165 TTVDETGALDSTNTIGVMTFNNPGGLKKIGNNL---YENTVNAGAND--GDPMTPVTPAD 219

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               I         V+L EE + +I  ++ +  ++++I  +D +L+ L+   +
Sbjct: 220 AKVSIIAGQLEMSNVDLSEEFTEMIVAQRGFQANSRIITTSDTVLEELVNLKR 272



 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 45/228 (19%), Gaps = 33/228 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +L       +       +   I  NI N +   + +   M               T   +
Sbjct: 1   MLRSMYSGISGLRGFQTKLDVIGNNIANVNTVGFKKGRVMFQDILSQNVQGAGAPTAGGK 60

Query: 49  NVT-------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             T         +  S +           +           F      M + D       
Sbjct: 61  GGTNPTQIGLGASIASIDTVFSAGSPMTTNLPTDLSIEGDGFF-----MVSPDEGATIYY 115

Query: 102 HYISKLRDSLESYSKNL-------SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                     E Y  N        ++    +   ++                      D 
Sbjct: 116 TRAGNFTRDAEGYLVNSQGMKLMNTDPAAIQISQNDGVVSYSIGKDGVITTVDETGALDS 175

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
              + +           + N+  +    +  +  D +        K+S
Sbjct: 176 TNTIGVMTFNNPGGLKKIGNNLYENTVNAGANDGDPMTPVTPADAKVS 223


>gi|188587648|ref|YP_001920210.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188497929|gb|ACD51065.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 366

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 84/272 (30%), Gaps = 21/272 (7%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T    +    +  S    L      +I + +  ++T+  E N +  DG  V         
Sbjct: 116 TGTGADAKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADGYRVMGYLLKDGD 175

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            GK       +D   P             + ++ + D    ++           I D   
Sbjct: 176 DGKPSVAWGEKDGDAP-------------VANYVDADSKNLHAVGEGAQLNTLKIPDKVL 222

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +                SF      V    L +    A     +  + +      I 
Sbjct: 223 APKRDPDGKPTAEFVEVPVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGLTSIG 282

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +   + N    E  +  +G L  + SD       +   F    +    +  V+L E+ 
Sbjct: 283 GNLLQTSPNSGP-EIIKTPVGKLATDFSD-------NSKGFGEFVQGALESSNVDLTEQF 334

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I   +++  S+K+I   D++LQT+   ++
Sbjct: 335 TDMITATRAFQASSKMITTGDEILQTITGLMR 366



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 35/149 (23%), Gaps = 9/149 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N     +       +                  
Sbjct: 1   MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLY--------QNASEA 52

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +   Q  L     ++ ++M   +  +   +  +    D     SK      
Sbjct: 53  TAPTSTKGGTNAKQVGLGSQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYA 112

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
             KT    A+       +++ ++     +
Sbjct: 113 ADKTGTG-ADAKNTIGISTSGKLTGGGEN 140


>gi|121997317|ref|YP_001002104.1| flagellar basal-body rod protein FlgG [Halorhodospira halophila
           SL1]
 gi|121588722|gb|ABM61302.1| flagellar basal-body rod protein FlgG [Halorhodospira halophila
           SL1]
          Length = 261

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 2/150 (1%)

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            D      +  +  +  N +  ++  +L + G    +    +   +          D   
Sbjct: 108 PDGQVGYTRDGALQLNENGEIVTSGGYLLEPGIQVPEEAETISIGSDGTVSAKIPGDEEP 167

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +A       L     N   +LE   S + ++    +    ++ +    T  VN
Sbjct: 168 EEIGQIELADFINPSGLEPVGENM--FLETAASGAPEVGAPGEGALGNVMQGALETSNVN 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + EEL  +I+ ++ +  + + I  TD+MLQ
Sbjct: 226 IAEELVNMIENQRGFETNTRAISTTDEMLQ 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 6/59 (10%), Positives = 16/59 (27%), Gaps = 1/59 (1%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKNMF 63
              A+   +   +       N+ N +   + +          + V     R+   N+ 
Sbjct: 4  ALWVAKTGLDAQQKSMQVTSNNLANVNTNGFKKDRANFEDLFYQTVRQPGSRASQDNLL 62


>gi|241761151|ref|ZP_04759240.1| protein of unknown function DUF1078 domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241374770|gb|EER64231.1| protein of unknown function DUF1078 domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 418

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/482 (7%), Positives = 106/482 (21%), Gaps = 76/482 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVVTQR 56
            F  +    N A    +    NI N+ +  + +  T       +               R
Sbjct: 2   AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPLASAKNIGQGTRLR 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +  ++     +   + A+        F     ++ +                    +   
Sbjct: 62  ATIQDFTSGSMKTTNRALDMMVNGDGFF----LVKSQGASGTISLTRDGSFLTDKNNNVV 117

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 L     DN+  +  N +T++                            TV N  
Sbjct: 118 TSDGHYLQVYATDNSGNIYTNGDTASA-----------------------TGGRTVKNLT 154

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +                   +   ++    ++          +             +   
Sbjct: 155 LPSYEDQITLDSTDKGSLVTVGNSLAATGNVTVDGHTIYGAKITLGGAGYTDTANTKLSG 214

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                +      ++    + V  +S   +A              + +    +        
Sbjct: 215 GVLTITGGRVDNASTRVANTVTYTSTNATATVNPSATGTTLTNITSLGTLASNGSTYTGK 274

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           ++ +   +D                                           S ++   S
Sbjct: 275 IMDASGAEDTTG--------------------------------------KVSPIQKDES 296

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +   +A    +   + +          +  +N    L         W     S
Sbjct: 297 GDTSSALSNIAVATDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNA--NWTVTGTS 354

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + +           +         ++L +EL  LI  ++++  ++K I   ++M+  ++
Sbjct: 355 GNLNYREADTSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVM 414

Query: 477 EG 478
             
Sbjct: 415 NI 416


>gi|225158946|ref|ZP_03725258.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2]
 gi|224802441|gb|EEG20701.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2]
          Length = 260

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 2/161 (1%)

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
              I+  D         +   +P  +   +      S  +       ++         Y 
Sbjct: 102 FFEIQRPDGTTAYTRDGSFKQDPNGQIVTADGLPVLSGFQAVPNGTTDITISDTGDVTYT 161

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           ++         +        L     N   + E   S + +     +  F    + Y  +
Sbjct: 162 NAAGNETFRLTLTRFANPAGLRSLGGNL--YEETPASGTPETGQPGEQGFGTTQQYYIES 219

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             VN+ EE+  LI  +++Y +S+K I  +D+MLQ + +  +
Sbjct: 220 SNVNIVEEMVNLIVAQRAYEVSSKAIQTSDEMLQNVTQLKR 260



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/238 (7%), Positives = 48/238 (20%), Gaps = 27/238 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      A            +I  N+ N +   + R                        
Sbjct: 1   MNLSLYSAATGMEAQQLNLNTIANNLANVNTAGFKRSKIEFHDMLYQSPRNAGAETGNGN 60

Query: 47  --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V +      +          L A S  +      + F  ++           +  
Sbjct: 61  LLPTGVEIGNGSRISSTAKIFTQGQLTASSEKLDIAIQGEGFFEIQ------RPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +              +                +   +V    A  ++   L ++
Sbjct: 115 TRDGSFKQDPNGQIVTADGLPVLSGFQAVPNGTTDITISDTGDVTYTNAAGNETFRLTLT 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                    ++  +  +   AS         ++     +   I   +  +      ++
Sbjct: 175 RFANPAGLRSLGGNLYEETPASGTPETGQPGEQGFGTTQQYYIESSNVNIVEEMVNLI 232


>gi|320354342|ref|YP_004195681.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus
           DSM 2032]
 gi|320122844|gb|ADW18390.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus
           DSM 2032]
          Length = 260

 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%)

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +  +          + + Y     VNL EE++ +I  ++++ I++ +I  +D+M
Sbjct: 193 ETEASGAPLIGAPGTNGIGTLLQGYVENSNVNLVEEMTHMITTQRAFEINSNVITTSDEM 252

Query: 472 LQTLLEGV 479
           +QT+   V
Sbjct: 253 MQTVTNMV 260



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 35/179 (19%), Gaps = 27/179 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
               +    +  +     I  N+ N     + +                         SP
Sbjct: 3   SLWTSTTGMSAQNLNMDVIANNLANVSTTGFKKSRADFQDLLYQIMKVPGSPTSADTRSP 62

Query: 48  ENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             + V       +  K   +  +    + +        F  +           N      
Sbjct: 63  TGIQVGLGVKPAAVTKVFTEGDIVQTENTLDVAIEGPGFFQV------TLPDGNIAYTRA 116

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             L+   E          +   ++   +      + +      +  D        +  +
Sbjct: 117 GNLKLDGEGRLTTSDGFPIEPEIVIPEDAREVTISQTGVVSAIVGDDTTSTELGNVDLV 175


>gi|326402284|ref|YP_004282365.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301]
 gi|325049145|dbj|BAJ79483.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301]
          Length = 425

 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/481 (10%), Positives = 128/481 (26%), Gaps = 57/481 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+    + + +     S  F +I  NI N+    Y                      N 
Sbjct: 1   MSIFGALDTSVSGLQAQSSAFTNISDNIANSQTIGYK-------------------GVNT 41

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +  + ++ + +S  G   ++ + E    +       +N  +  I+       S     + 
Sbjct: 42  HFTNYLVQSTASNNGPDSVVANPEYTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTT 101

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                T   +A++                                       +N +    
Sbjct: 102 TAGKTTQTFDAQQYYTRAGD------------------------------FTLNSSGYLV 131

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEK 239
             +      +           S +  I      +        +   TL  T        +
Sbjct: 132 NGAGAYLDGWSVNPTTGTVNTSSLAPIQVSQGASPPVPTSNVTLSATLPTTPSSTPVTTQ 191

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++ Y       P+ +    V+ +  +                   +  N    ++ +  G
Sbjct: 192 VDVYDSLGNMQPLNLSWSPVTGSANTWTLNVSSPNATPSTVGSATMAFNTNGTLSSITAG 251

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + +          +      A  I             T  +     ++ +      + S 
Sbjct: 252 TGATSPAAGQLQISPSYNGSAQPITLDFGAPG----STAGLTQYAGTSLNLQGVSQNGSP 307

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
              ++  ++    ++  +Y + F+K     P+A   +   L   +           S + 
Sbjct: 308 SGAFSNLSIDTQGNITANYTNGFSKQIAQIPLASFASPDALQNKSGQI--ETATQASGAA 365

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            ++         +         V++  + + LI  +Q+Y  + K++    ++L T +  V
Sbjct: 366 TINAVGGSG-GALVTGSVENSNVDIATQFTDLINAQQAYTANTKVVTAAQQILTTTVNMV 424

Query: 480 K 480
           +
Sbjct: 425 Q 425


>gi|213622267|ref|ZP_03375050.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 107

 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +  N T  +     +  +    S           V   + +   +  GVNL EE   L +
Sbjct: 22  VGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 81

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            +Q Y  + +++   + +   LL  
Sbjct: 82  YQQYYLANAQVLQTANALFDALLNI 106


>gi|253682640|ref|ZP_04863437.1| flagellar basal-body rod protein FlgG [Clostridium botulinum D str.
           1873]
 gi|253562352|gb|EES91804.1| flagellar basal-body rod protein FlgG [Clostridium botulinum D str.
           1873]
          Length = 333

 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 6/121 (4%)

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL-----LEYARNSIGWLEKNRSDSH 419
             ++     +     D          +        L       Y+          RS   
Sbjct: 214 SFSIEKNGLIKGVLDDGTITALGQIAMTSFKNPEGLKKEGKNMYSNTPNSGKPVFRSGIG 273

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                S+  +  + +       V+L E+ + +I   +++  S K+I   D++LQ ++   
Sbjct: 274 ADKDNSES-YGDMIQGMLEMSNVDLAEQFTDMIVTTRAFQASGKMISTGDEILQDIINLK 332

Query: 480 K 480
           +
Sbjct: 333 R 333



 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/166 (6%), Positives = 28/166 (16%), Gaps = 36/166 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L       +       +      NI N     +                          
Sbjct: 1   MLRSMYAGISGMKVNQTKLDVTGNNIANVSTTAFKGSRVRFQDMLSQNVQEAVGPGKNLG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-- 100
            V        V+    +  +   +L   S  +        +  + +    +   +     
Sbjct: 61  GVNGRQVGLGVSVAGIDTVVSQGMLQPTSRNLDVAIDGTGYLVVAKGKLGESSADTGIEL 120

Query: 101 --------------THYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
                                    E          +    I+ A+
Sbjct: 121 NDGNINENSNFQINYTRDGAFALDYEGNLLTSEGYRVMGYAIEGAD 166


>gi|256370963|ref|YP_003108787.1| protein of unknown function DUF1078 domain protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007547|gb|ACU53114.1| protein of unknown function DUF1078 domain protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 431

 Score = 75.8 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/476 (9%), Positives = 109/476 (22%), Gaps = 46/476 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +    + A +      +   +I  NI NA+   Y    T                    +
Sbjct: 1   MTKSLSSAISGIEANQEWLDNIANNIANANTTGYQSTQTEFA---------------DLL 45

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           + +   A     GQ            +  +    + S    +     +  +        +
Sbjct: 46  YQQQSAAGGPVPGQTGGTNPLVVGSGVRVSATPTDFSQGTIVQTGTSTDVAIQGQGFLVV 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                     +     + + + V    A     +      + +      +     +    
Sbjct: 106 NQGGQNYYTRDGALQLDGAGQLVTASGALVMGWVPNAAGQVNQNAPLAALTIPQGQVAQP 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                         L    S  + ++T   ++    V      T   +   +       +
Sbjct: 166 VATSTITLG---GNLPAGSSNPVVVTTTGYDDLGNPVPIQ--LTFTPSTTANQWTLTAET 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + S      G   S         G+I A+                        +  
Sbjct: 221 TPPGATSPVALTVGGASSQTVTFDPATGQISAI-------------------SGTSTANP 261

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           ++  + G   +           D                    S+P+      +      
Sbjct: 262 DQLALGGFPTSYDLPAGYAMNLDFPTPGTAQAVTQFA-----ASSPTAQVTNQNGYPSGA 316

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     +   Y +   +      +A       L +             S +  L 
Sbjct: 317 LAGFTIGSDGVIEGTYANGRTQVLGQIALAQFANAQGLSKQGNLLYA--ATTNSGAPQLG 374

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    +      +  V++  EL+ L+  +  Y  + K++  T  +LQ+L++ 
Sbjct: 375 SPGAAGLGQLVGGALESSNVSIGSELTNLVVAQTDYQANTKVVQTTATVLQSLVQM 430


>gi|297183134|gb|ADI19277.1| flagellar basal body rod protein [uncultured delta proteobacterium
           HF0200_39L23]
          Length = 262

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 59/192 (30%), Gaps = 2/192 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +     ++      E      +       F      +      +     I    +  +N 
Sbjct: 73  KFIGTEKIHTQGNLENTGNDLDISIDGHGFFQILQPNGIVGYSRDGHFNIDGMGRLVTND 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L D      +    ++        +    ++  +      +A       L    +N  
Sbjct: 133 GMLLDPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSVQLARFQNPAGLTPIGKNL- 191

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            ++    S +  +          +++ +     V+L EE+  +I  +++Y +++K I   
Sbjct: 192 -YVSTPASGNAIVDAPGANSMGSLTQGFLERSNVSLVEEMVNMITSQRAYEVNSKAIQSA 250

Query: 469 DKMLQTLLEGVK 480
           D+ML+     V+
Sbjct: 251 DEMLKNTNNLVR 262



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/180 (5%), Positives = 28/180 (15%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           ++     A        +   +   N+ N +   Y +                 V      
Sbjct: 1   MMRALYTAATGMAAQQRNIDTTANNLANVNTSGYKKSKVHFQDLLYHNERTAGVPSSVST 60

Query: 57  SENKNM---------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                +                   L    + +        F  + +             
Sbjct: 61  QVPVGLHVGHGVKFIGTEKIHTQGNLENTGNDLDISIDGHGFFQILQ------PNGIVGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                               +L   +    +               +R +   E    + 
Sbjct: 115 SRDGHFNIDGMGRLVTNDGMLLDPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSVQ 174


>gi|46203395|ref|ZP_00051590.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum
           magnetotacticum MS-1]
          Length = 293

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 75/288 (26%), Gaps = 5/288 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-NVTVVTQRSEN 59
           MSL+ V     +  N  S + +++  NI+NA+   Y R     +     +  V T  S  
Sbjct: 1   MSLIGVLRTGVSGMNAQSNRISTVAENIQNANTTGYKRTSAEFSSLLLDSGDVGTYNSGA 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDS-LESYSKN 117
                +        I      +             D                       N
Sbjct: 61  VETTLRRSIGERGPISSTNSDKDLAIQGNGFFVVRDESGAPFLTRAGNFVVDGKSGNLVN 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
                L    + N          +  +   +     +      + +   LS  T V D  
Sbjct: 121 AGGFTLLGYSLANGAPNPVLNGVADLKPVNVNVMGQEARPSTNATVSGNLSYETPVYDP- 179

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
               A  +   + L   D + Q +   + ++    N   +  +     T+       + F
Sbjct: 180 TAAGAIGYSKKNSLKVYDNVGQPLILDVQMTKTSTNTWSVKFFDPAAPTV-SLGSSTVTF 238

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           +     +    +N    +G  V+ +           AL    D   P 
Sbjct: 239 DGNGKVSSGGSANVAVPNGRTVAVDMSGLTQLSGAHALTGTADGSAPT 286


>gi|237752020|ref|ZP_04582500.1| flagellar hook protein flge [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376587|gb|EEO26678.1| flagellar hook protein flge [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 764

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 16/216 (7%)

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
            ++R  +       L     V+       D  A  +             DL        S
Sbjct: 554 WEVRTEIYDSTGKALISDTPVMSEITFNADGSANATPFEVPFNNGSITVDLTKSEDGKTS 613

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                      + +        +   +     +     ++ ++ +   +      VA   
Sbjct: 614 SNFAYT-----DSTTKSITQDGTASGIMKDIVINKDGIILVNFTNGRTEPIGRFGVAAFV 668

Query: 396 TNVTLLEYARNS-------IGWLEKNRSDSHDLHMKSQVV----FNHISESYSNTVGVNL 444
            +  L +   N        I       S    L      +    F  + +    T  V+ 
Sbjct: 669 NDQGLSKVGGNLFEMNARTINGQTSVVSGPPILAWNEDGLAGLKFGQVMDHMLETSNVDT 728

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              L+ LI  ++ Y +S K I   D+++Q  ++  +
Sbjct: 729 GTALTDLIVYQRGYQMSAKSITTADQLMQEAIQLKR 764



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 29/150 (19%), Gaps = 23/150 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++  F    +          S   NI N +   Y                          
Sbjct: 1   MVGSFYNGISGIKTHQFGIDSTSNNIANVNTTGYRGNLPEFKSLFATNLNFINSNSPINN 60

Query: 47  ----PENVTVVTQRSENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNS 99
                  +      S +      D   +   S  G   +        ++ S +      +
Sbjct: 61  DYNYGATIGSNAINSNDGTYVKADGDFNVAYSGKGWFVVGLDKSGEFDIKSPNYTGTQQN 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVID 129
                       E Y  N S   +    + 
Sbjct: 121 FFTRDGSFSLDGEGYLVNSSGYYMYGINLG 150


>gi|242309658|ref|ZP_04808813.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489]
 gi|239523659|gb|EEQ63525.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489]
          Length = 750

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/472 (9%), Positives = 120/472 (25%), Gaps = 14/472 (2%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
              +    A         N    D               + + +      + +  +K + 
Sbjct: 293 SGSSNLLAAQVAI----NNF--KDTTG-----VEALTRGDTLILQNTNQLDGDGSNKNIR 341

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
               +       ++   L   ++    +  + T        S +  +      +L +   
Sbjct: 342 VTGRSGAALGFGENPNNLDSAVTVTTAFKYTYTLQTDADSTSGQFRTTEDLRALLQQDAN 401

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
              E    +   +A                   +++   +    +N+       +   A 
Sbjct: 402 KVKEFGGDSAAAAAGMNGAGGVPPTFLQSNYTVSVKLNSTGQFEINNKDDGVNVANGAAG 461

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
              D  ++ +   ++ +  + ++  N    + T                    + T+   
Sbjct: 462 AAFDNLNIFVSAYNDDLTTTNVLFKNQMKAMNTGVLVEGGNVTSTAGLRMATYAQTLDIY 521

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
            +        +   + ++        + +  + +    Q   + +    +    + + + 
Sbjct: 522 DSLGNKHEFSIEFTKVASNQWDWRIIVPEPAEIIGASAQRP-NILEGGSVTFGEQGEILG 580

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            N   +               L  G S          +     +  G      +      
Sbjct: 581 FNPSTIQFKPNNGAAFPQSIDLDFGTSGGYDGLTSTAAESQANKVTGDGYASGMLQDFYF 640

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                +I  + +  N       VA       L E   N     E   S    +       
Sbjct: 641 DATGTMIGKFDNGQNLALAQVAVATFANYEGLQESGSNLYS--ESPNSGQATIGTAGTGG 698

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +I  S       +L   L+ LI V++ +  S+K I  +D++L TLL   +
Sbjct: 699 RANIQASKLEMSNTDLSRGLTQLIVVQRGFQASSKSITTSDQILNTLLGLKQ 750



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/394 (8%), Positives = 78/394 (19%), Gaps = 37/394 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       +              NI N +   +       +                  
Sbjct: 1   MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRSATIPYAGYG 60

Query: 52  ---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         +  K      L                  +            +   
Sbjct: 61  GVNDYSVGLGTGIETTTKVFSQGSLQNTDRKADLALEGNGMFVVSNN-----GGFTNMYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                           S  I+   V D ++      + +   V       +  I+  ++ 
Sbjct: 116 RDGAFSFDAVGNLVTTSGYIVQGWVRDLSQLNCNCGSGNINRVDSTGPVGNITIDPRLTI 175

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN-----NNDM 217
             +  S +T   +               LD           +  I            +  
Sbjct: 176 PAKATSSVTGNINLTSGTKTENTTCPSPLDTAADNNYIAGGLDRIYDTTDKQIEVAQDMG 235

Query: 218 VVYTSDGTTLF-------ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
           V++   G  L            +    E +   T  + ++ I I+GV ++          
Sbjct: 236 VMFNDAGEALQLQEGQGIWVSYQTATTEPLQIDTNFNGTSSITINGVTITWTNNPNTSGS 295

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
                 Q+  +                +   +        S     +    G      + 
Sbjct: 296 SNLLAAQVAINNFKDTTGVEALTRGDTLILQNTNQLDGDGSNKNIRVTGRSGAALGFGEN 355

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
              +   + V   ++   +   D  S S +F   
Sbjct: 356 PNNLDSAVTVTTAFKYTYTLQTDADSTSGQFRTT 389


>gi|212709494|ref|ZP_03317622.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM
           30120]
 gi|212687832|gb|EEB47360.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM
           30120]
          Length = 260

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 62/181 (34%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 K     +       F+   + D  +   +  +     + Q  ++  +      +
Sbjct: 82  SQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGALQRNQDGQLVTSSGYQVVPAIM 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +  Y D+  +      +     +  L     N   ++E   S 
Sbjct: 142 IPENANSLSIARDGTVSVTVYGDNQPQQIGQITLTTFINDAGLESMGENL--YMETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + +    T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNESAPGTNGAGLLYQGMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 13/44 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A+   +        I  N+ N     + R+  +    
Sbjct: 1  MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44


>gi|213418634|ref|ZP_03351700.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 142

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1   MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              + E        L    +            +  + + AD   ++S +  +     SL+
Sbjct: 61  SGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLAD--KSSSLSGSLQSFFTSLQ 118

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQ 136
           +   N  +    + +I  AE +V 
Sbjct: 119 TLVSNAEDPAARQALIGKAEGLVN 142


>gi|85715029|ref|ZP_01046014.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A]
 gi|85698226|gb|EAQ36098.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A]
          Length = 640

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/450 (7%), Positives = 87/450 (19%), Gaps = 18/450 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           M +    N +       S    +I  NI N+    Y    T        + +P       
Sbjct: 28  MGIFDALNTSVGGLQAQSFALQNISGNIANSQTTGYKGITTAFVDLIPDSTTPNRQVAGG 87

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108
             +           + A +           F  ++      D+       +        +
Sbjct: 88  VTAYATPTISSQGTVSASTVGTYMAINGDGFFNVQTPTGRVDNQPQFSGVTYYTRRGDFQ 147

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
                +  N +   L    +D   +         + ++   +    +    +       +
Sbjct: 148 VDAHGHLVNSAGYYLMGVAVDP--KTGNPLGNVPQVLKFQNSFVPAQATTTVQYAANLPA 205

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
               ++ A     +                  +           N       T+  T   
Sbjct: 206 VPRTLSSATAPVGSITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNTTMGSPATNQQTPPV 265

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +      S ++           V  ++   +                 +     
Sbjct: 266 AITSATLLSGTAPSDSLPGGFAVGDTITVNGTTITFTDASTALPPGAQDATHVRIDDTVG 325

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP----QY 344
            L      + G     D   G      G      +    +                    
Sbjct: 326 DLLGKIGAITGQAPTIDAGTGAITLHTGTAQDLSVTSASSGWTAMGFGATTNIARGGGGT 385

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 + +  ++ ++   +   +  Y                     G   + T   + 
Sbjct: 386 PGAGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNLFY 445

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           +          +  +     +  V   +S 
Sbjct: 446 QADPNATGTQAAWINVGTNFTFGVNGQLSS 475



 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 98/372 (26%), Gaps = 11/372 (2%)

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DSL           +  T I   +        +         D   ++  +I  +     
Sbjct: 280 DSLPGGFAVGDTITVNGTTITFTDASTALPPGAQDATHVRIDDTVGDLLGKIGAITGQAP 339

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            +     AI   T +  D                    I+          V  ++  T+F
Sbjct: 340 TIDAGTGAITLHTGTAQDLSVTSASSGWTAMGFGATTNIARGGGGTPGAGVVIANDQTIF 399

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +              T T+ +  +       +S          +       D      Q 
Sbjct: 400 QQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNL---FYQADPNATGTQA 456

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
               +        + +      S  +    ++ G + L N      S  +        N 
Sbjct: 457 AWINVGTNFTFGVNGQLSSPVGSS-ITIPSVSVGSQSLGNLTLNIGSGGLTQYASSGGNA 515

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +      +           +     ++  + +  N +     ++  N    L     +  
Sbjct: 516 TINAINQNGYAAGQLQSVAINNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLKAL--DGG 573

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +   + S              HIS S       ++ +E + LI  +Q+Y+ + K+I   
Sbjct: 574 AYAVTDESGPAIAGAA-----GHISGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTA 628

Query: 469 DKMLQTLLEGVK 480
           + M+Q LL  ++
Sbjct: 629 NSMVQDLLNVLR 640


>gi|148259130|ref|YP_001233257.1| flagellar hook protein FlgE [Acidiphilium cryptum JF-5]
 gi|146400811|gb|ABQ29338.1| flagellar basal body FlaE domain protein [Acidiphilium cryptum
           JF-5]
          Length = 425

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/481 (10%), Positives = 128/481 (26%), Gaps = 57/481 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+    + + +     S  F +I  NI N+    Y                      N 
Sbjct: 1   MSIFGALDTSVSGLQAQSSAFTNISDNIANSQTIGYK-------------------GVNT 41

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +  + ++ + +S  G   ++ + E    +       +N  +  I+       S     + 
Sbjct: 42  HFTNYLVQSTASNNGPDSVVANPEYTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTT 101

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                T   +A++                                       +N +    
Sbjct: 102 TAGKTTQTFDAQQYYTRAGD------------------------------FTLNSSGYLV 131

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFETVPRDINFEK 239
             +      +           S +  I      +        +   TL  T        +
Sbjct: 132 NGAGAYLDGWSVNPTTGTVNTSSLAPIQVSQGASPPVPTSNVTLSATLPTTPSSTPVTTQ 191

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           ++ Y       P+ +    V+ +  +                   +  N    ++ +  G
Sbjct: 192 VDVYDSLGNMQPLNLSWSPVTGSANTWTLNVSSPNATPSTVGSATMAFNTNGTLSSITAG 251

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + +          +      A  I             T  +     ++ +      + S 
Sbjct: 252 TGTTSPAAGQLQISPSYNGSAQPITLDFGAPG----STAGLTQYAGTSLNLQGVSQNGSP 307

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
              ++  ++    ++  +Y + F+K     P+A   +   L   +           S + 
Sbjct: 308 SGAFSNLSIDTQGNITANYTNGFSKQIAQIPLASFASPDALQNKSGQI--ETATQASGAA 365

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            ++         +         V++  + + LI  +Q+Y  + K++    ++L T +  V
Sbjct: 366 TINAVGGSG-GALVTGSVENSNVDIATQFTDLINAQQAYTANTKVVTAAQQILTTTVNMV 424

Query: 480 K 480
           +
Sbjct: 425 Q 425


>gi|183598619|ref|ZP_02960112.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827]
 gi|188020798|gb|EDU58838.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827]
          Length = 260

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 62/187 (33%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+       K     +       F+   + D  +   +  +     + Q  ++  + 
Sbjct: 76  ATMRIHSQGALNKTGNTTDIAIKGQGFLHVQLPDGTDAYTRDGALQPNQDGQLVTSSGYQ 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       ++         I  Y D+  +      +     +  L     N   ++
Sbjct: 136 IVPAITIPDNANSLTIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENL--YM 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + +           + +    T  VN+ EEL  +I+ +++Y I++K +  +D+M
Sbjct: 194 ETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQRLTQL 260



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 13/44 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A+   +        I  N+ N     + R+  +    
Sbjct: 1  MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44


>gi|330892701|gb|EGH25362.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 123

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 38/121 (31%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                     AG  D  N       +      V       +L     + +  +       
Sbjct: 3   NDTFSIGLTGAGSSDNRNALAVVGLQTAKTVGVTNGGVGTSLSGAYADLVSVVGTLAGQG 62

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 S  V      +  +  GV+L EE + LIK +Q Y  S+++I     +  TL+  
Sbjct: 63  KSDVTASAAVVAQAKSARDSVSGVSLDEEAANLIKYQQYYTASSQIIKAAQTIFSTLINS 122

Query: 479 V 479
           +
Sbjct: 123 L 123


>gi|326796595|ref|YP_004314415.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea
           MMB-1]
 gi|326547359|gb|ADZ92579.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea
           MMB-1]
          Length = 261

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           M +              +       F      D      +  S  +    Q   +   L 
Sbjct: 77  MQKNFEEGDYNVTDRNLDVAIQGAGFFQITRSDGTTAYTRDGSFQLNSEGQMVDSSGNLL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           D        + ++         +    ++  +      +A       L     N   + E
Sbjct: 137 DPQISFDSDVVDITIGDDGTVSVLRAGETDQEEIGSITIANFINPAGLYFLGGNL--YEE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + S +  + +  +     + +       VN  EEL  +I  +++Y +++K+I   D ML
Sbjct: 195 TSASGAPIVGVPGEEGLGELGQGMLEASNVNSVEELVNMITTQRAYEMNSKVISTADGML 254



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/183 (8%), Positives = 43/183 (23%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +      A+       +Q + I  N+ N     + +   +                   T
Sbjct: 1   MQTALWTAKTGLTAMDRQLSVISNNLANVSTTGFKKERAVFENLMYQTLKSPGGLSAQNT 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +           N  +   +     +        F  +            +  
Sbjct: 61  ELPSGLQIGAGVRVTGMQKNFEEGDYNVTDRNLDVAIQGAGFFQI------TRSDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + + E    + S ++L   +  +++ V                + D+E    I+
Sbjct: 115 TRDGSFQLNSEGQMVDSSGNLLDPQISFDSDVVDITIGDDGTVSVLRAGETDQEEIGSIT 174

Query: 162 NLR 164
              
Sbjct: 175 IAN 177


>gi|307719963|ref|YP_003891103.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306978056|gb|ADN08091.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 420

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/477 (6%), Positives = 103/477 (21%), Gaps = 61/477 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F    +     S     +  N+ N D   +   D   +                 +
Sbjct: 2   MTQAFYTGISGIKTNSTGIDIVSDNMANIDTIGFRGNDYEFSSL-----------FENML 50

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L   S++            + +   +    + S    ++   D       N +   
Sbjct: 51  STDTLGTPSNSSIGVGSQLQASPMVQQKGSFMISDKS--TDLALFEDGWFGIKGNGNTLY 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                    ++           +  +  +                               
Sbjct: 109 TRDGNFTFDKDDDLVTQDGFHVLGTMGNNISD---------------------NDVLIEQ 147

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                   + +++ L    S                + T                   + 
Sbjct: 148 LPEVKLKDVVEQEPLRFPKSLTFPPEATSNAKFIGNLGTE----------PFTRTMSASV 197

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               +  N + ++  +             +     +  + +   Q               
Sbjct: 198 VDPQNNKNDLRLEFSLSQIQTPPGTQWDVVAKTQSLDGTKLYDTQTG------------- 244

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               ++ ++           I +    +   +           + P         +    
Sbjct: 245 ---QVSFDASGALISNTLTTIDNNGAPVSIDLGNNFDGVVSISNVPISASSTADGTIGGD 301

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               ++    ++I  + +    +     V     +  L   +         +        
Sbjct: 302 LQGYDINKNGEVIATFTNGMQSSVGKIAVYHFQNDQGLNRISGTRFQESTNSGKALFFKD 361

Query: 423 MKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            K + +    ++        + +   L+ LI ++++Y+ ++K +   D+M+Q  L  
Sbjct: 362 EKGENIIGTNMANFKLEGSNIEMSYGLTELIILQRAYDANSKSVTTADQMMQKALNM 418


>gi|150020364|ref|YP_001305718.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis
           BI429]
 gi|149792885|gb|ABR30333.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis
           BI429]
          Length = 261

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 3/193 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            +L    R+      E+   + +       F    ++D      +     I  N +  ++
Sbjct: 72  TKLSATTRIFTQGNLERTGNSLDIAISGDGFFQIQLQDGRIAYTRDGQFKIDGNGRIITS 131

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              L     V  +    + N++    +     D   +N     +        L     N 
Sbjct: 132 NGNLLSPNIVVPQNAVAI-NISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIGDNL 190

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +LE   S +       Q  F  I + Y     V++ +E+  +I   ++Y ++++ +  
Sbjct: 191 --YLETPASGAPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISAMRAYELNSRTVQT 248

Query: 468 TDKMLQTLLEGVK 480
            D+ML+T     +
Sbjct: 249 ADEMLRTASNMKR 261



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/224 (7%), Positives = 51/224 (22%), Gaps = 27/224 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A         +  ++  NI N D   Y +  T                     
Sbjct: 1   MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKTEFQDLLYDYSKNAGAATAQNS 60

Query: 45  ---ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  +      L    +++        F  ++              
Sbjct: 61  IHPTGLYVGHGTKLSATTRIFTQGNLERTGNSLDIAISGDGFFQIQ------LQDGRIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + +          + ++L   ++     V  N +       +++    + +     
Sbjct: 115 TRDGQFKIDGNGRIITSNGNLLSPNIVVPQNAVAINISPDGIVTAELQDGTLQNLGTITL 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                 S L  + D +  +T +     +    +D     +   +
Sbjct: 175 VRFINPSGLKAIGDNLYLETPASGAPVEGTAGQDGFGSILQGYV 218


>gi|255523696|ref|ZP_05390662.1| protein of unknown function DUF1078 domain protein [Clostridium
           carboxidivorans P7]
 gi|296186699|ref|ZP_06855101.1| flagellar hook-basal body protein [Clostridium carboxidivorans P7]
 gi|255512565|gb|EET88839.1| protein of unknown function DUF1078 domain protein [Clostridium
           carboxidivorans P7]
 gi|296048736|gb|EFG88168.1| flagellar hook-basal body protein [Clostridium carboxidivorans P7]
          Length = 338

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 69/265 (26%), Gaps = 9/265 (3%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T  G+    + P D+  +    + V + + P     V ++                   
Sbjct: 79  STGQGSMQPTSAPLDVAIDGDGYFIVGTGAVPEDSGTVQITVTDDEKHTMSPDGVTTSFT 138

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
                   +   +    L+ S   +     NS+          +                
Sbjct: 139 RDG-----SFTLDTQGNLLTSDGLRVYGYANSKVSITYSKDPKVACTGTYDANAEGGADT 193

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                   P  + +  +   K         G    I    DS         +A       
Sbjct: 194 EMNAEGLVPLVIPEYLTAGDKNHRIKSYSIGSDGTITATLDSGTAVLGQIAMASFKNPAG 253

Query: 400 LLEYARNSIGWLEKNR----SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           L +  +N       +       +      +   +    +       V+L EE + +I   
Sbjct: 254 LSKLGKNLYQISPNSGDPVVRSTSTSSDDNSAAYGDARQGMLEMSNVDLAEEFTNMIIAN 313

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           +++  + K+I   D++LQ L+   +
Sbjct: 314 RAFQANGKIITTGDEILQDLVNLKR 338



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/326 (7%), Positives = 66/326 (20%), Gaps = 26/326 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----- 57
           +L       +      ++   I  NI N+    Y  +                 +     
Sbjct: 1   MLPSMFSGISGLKVNQRKLDVIGNNIANSSTTAYKTQRARFEDMVSQSMASATGASSKLG 60

Query: 58  ---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                           + +     +   S+ +        +  +      +D      T 
Sbjct: 61  GTNPRQVGLGVQLAGIDTSTGQGSMQPTSAPLDVAIDGDGYFIVGTGAVPEDSGTVQITV 120

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              +          +        T   +     Q    ++  ++       K       +
Sbjct: 121 TDDEKHT------MSPDGVTTSFTRDGSFTLDTQGNLLTSDGLRVYGYANSKVSITYSKD 174

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
            +   +     N      T    +    L   + L          S  + ++  +     
Sbjct: 175 PKVACTGTYDANAEGGADTEMNAEGLVPLVIPEYLTAGDKNHRIKSYSIGSDGTITATLD 234

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
            GT +   +             +      I  +         S        A    R  +
Sbjct: 235 SGTAVLGQIAMASFKNPAGLSKLGKNLYQISPNSGDPVVRSTSTSSDDNSAAYGDARQGM 294

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIA 308
           + +    L E    +I +        
Sbjct: 295 LEMSNVDLAEEFTNMIIANRAFQANG 320


>gi|269792757|ref|YP_003317661.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100392|gb|ACZ19379.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 262

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 61/201 (30%), Gaps = 2/201 (0%)

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           + +     +++   +R++     +      +       F    + D      +  +  I 
Sbjct: 64  NGIQVGLGSRVSGTSRIMGQGNMQVTGNPTDVAIEGDGFFQVTMPDGTVAYTRDGAWRID 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            N Q  +   +L +           +         +    D   +      +A       
Sbjct: 124 GNGQIVTADGYLLEPAVTVPNNAKEIIISPTGQVSVLLPGDQNPQEIGQIQLARFVNPGG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   ++E   S +  +    +       +       V + EE+  +I  +++Y 
Sbjct: 184 LKALGKNL--FIETPASGAPIVGNPGEEGLGTTIQRTLEMANVQVVEEMVNMIVAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D++L+      +
Sbjct: 242 ANSKTIATADELLRIANNLRR 262



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/177 (5%), Positives = 26/177 (14%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++                   +  N+ N +   + +                        
Sbjct: 1   MIRSLWSGATGMIAQQTNLDVVSHNLANVNTAGFKKLRADFQDLMYQIDREPGAPVEPAS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        V         M    +    +          F  +            
Sbjct: 61  MVPNGIQVGLGSRVSGTSRI---MGQGNMQVTGNPTDVAIEGDGFFQV------TMPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    R             +L   V           + + +    +  D + +
Sbjct: 112 VAYTRDGAWRIDGNGQIVTADGYLLEPAVTVPNNAKEIIISPTGQVSVLLPGDQNPQ 168


>gi|220934396|ref|YP_002513295.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995706|gb|ACL72308.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 263

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 2/186 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              ++       +   A +       F    + D +    +  S  +  + Q  ++  + 
Sbjct: 76  ATEKMFTQGNVTQTENALDMAIEGRGFFQILMPDGNIAYTRDGSFQLNSDGQLVTSGGYE 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            D G V  +   +V              +          +A       L    +N   ++
Sbjct: 136 VDPGIVIPEGALSVTVAEDGTVSATVAGNVAPIVVGNLQLADFINPAGLQPIGQNL--FI 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +             + + +  +  VN  EEL  +I+ +++Y +++K I   D+M
Sbjct: 194 ETAASGAPQAGNPGLDGRGRLLQGFLESSNVNTVEELVNMIETQRAYEMNSKAISTADQM 253

Query: 472 LQTLLE 477
           LQ +  
Sbjct: 254 LQYVNN 259



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 55/234 (23%), Gaps = 31/234 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61
           +      A+   +    + + I  N+ N +   + +   +      + V     ++    
Sbjct: 1   MNKALWIAKTGLDAQQTRMSVISNNLANVNTTGFKKGRAVFQDLIYQTVRQAGAQAAQDT 60

Query: 62  --------------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                                    +    +A+      + F  +           N   
Sbjct: 61  ELPSGLMLGTGVRTVATEKMFTQGNVTQTENALDMAIEGRGFFQIL------MPDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-- 159
                 + + +          +   ++     +             +  +    +     
Sbjct: 115 TRDGSFQLNSDGQLVTSGGYEVDPGIVIPEGALSVTVAEDGTVSATVAGNVAPIVVGNLQ 174

Query: 160 -ISNLRRFLSELTVVNDAIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIV 211
               +     +    N  I+   +    A +  LD R  LLQ   E   ++T+ 
Sbjct: 175 LADFINPAGLQPIGQNLFIETAASGAPQAGNPGLDGRGRLLQGFLESSNVNTVE 228


>gi|32266580|ref|NP_860612.1| flagellar basal body rod protein FlgG [Helicobacter hepaticus ATCC
           51449]
 gi|32262631|gb|AAP77678.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC
           51449]
          Length = 262

 Score = 75.5 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 8/200 (4%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            V P+   ++           +    I GN      L   +                +  
Sbjct: 71  GVRPVAIQKMFSQGHPKETENNLDIAITGNGFFQIELPDGNIAYTRAGSFKLDNDGNVVN 130

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
              YR  P      G+       +        +          +   F   AG      L
Sbjct: 131 AEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNILGQIEIVNFINPAG------L 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   ++  N S      +     F  + + +     V L EE++ LI  +++Y  
Sbjct: 185 HSLGDNL--FINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLITGQRAYEA 242

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           ++K I   D MLQT+    +
Sbjct: 243 NSKTIQTADSMLQTVNGLKR 262



 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 53/255 (20%), Gaps = 34/255 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   Y ++                       
Sbjct: 1   MMRSLYTASTGMLGQQLQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K           + +        F  ++          N   
Sbjct: 61  ISPTGIEVGIGVRPVAIQKMFSQGHPKETENNLDIAITGNGFFQIE------LPDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   +    N     L   +         N  T            +  I  +I 
Sbjct: 115 TRAGSFKLDNDGNVVNAEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNILGQIE 174

Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            +          L +   +N        +     D   Q      ++S +  +  +    
Sbjct: 175 IVNFINPAGLHSLGDNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLI 234

Query: 215 NDMVVYTSDGTTLFE 229
                Y ++  T+  
Sbjct: 235 TGQRAYEANSKTIQT 249


>gi|237750021|ref|ZP_04580501.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879]
 gi|229374432|gb|EEO24823.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879]
          Length = 262

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 2/174 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +   +   F    + D +    +  +  +       ++  +L            ++ 
Sbjct: 91  NPLDVAIMGKGFFPIQLPDGNIAYTRSGNFKLDDQGNIVTSEGYLVQPQITVPPEAQSIN 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             A     +    +   +      +        L     N   ++  N S      +  Q
Sbjct: 151 IGADGTVSVTLGNNGQAEVLGQIQLVNFVNPAGLHGLGDNL--YMNTNASGEPIEGIAGQ 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I   +     V L  E++ LI  +++Y  ++K I   D MLQT+    +
Sbjct: 209 DGLGQIRAGFLELSNVRLVSEMTDLITGQRAYEANSKSIQTADSMLQTVNGLKR 262



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/258 (8%), Positives = 55/258 (21%), Gaps = 40/258 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   + R+                       
Sbjct: 1   MMRSLYTATTGMLGQQLQIDTTSNNIANVNTVGFKRQRAEFNDLFYQTLQFAGTQTSETT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                     + +    + + F  ++          N
Sbjct: 61  LTPTGIEVGVGVRTGAINRIYSQ---GSPKETENPLDVAIMGKGFFPIQ------LPDGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    +   +         ++   +    E    N          +  +   E+  
Sbjct: 112 IAYTRSGNFKLDDQGNIVTSEGYLVQPQITVPPEAQSINIGADGTVSVTLGNNGQAEVLG 171

Query: 159 EISNLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
           +I  +          L +   +N     +        D L Q      ++S +  +S + 
Sbjct: 172 QIQLVNFVNPAGLHGLGDNLYMNTNASGEPIEGIAGQDGLGQIRAGFLELSNVRLVSEMT 231

Query: 212 RNNNDMVVYTSDGTTLFE 229
                   Y ++  ++  
Sbjct: 232 DLITGQRAYEANSKSIQT 249


>gi|218887604|ref|YP_002436925.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758558|gb|ACL09457.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 260

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 66/217 (30%), Gaps = 4/217 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
              +     +   +I   +      +   + +            + +       F    +
Sbjct: 48  NMRIAGAATEGDNRIPTGIQVGMGVRPTTVHKFFTQGDYSNTGNSLDLAIEGDGFFLVQV 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
              D     G  +         +N   L+   +V  +         G+   ++    +  
Sbjct: 108 NGEDAYTRAGAFKLNQDGVVVTANGYTLQPEFTVPAETKNITVTENGHISALDSNGAAL- 166

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                 P+        L    RN   ++    S      +  +     I++ +     V 
Sbjct: 167 -AEADIPLYTFINPAGLEARGRNL--YVPSEASGEAVEGVPGENQVGTIAQGFLEMSNVE 223

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +E+  +I  +++Y +++K I  +D MLQT ++  +
Sbjct: 224 VVDEMVNMIVGQRAYEMNSKAIQTSDTMLQTAVQLKR 260



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/152 (6%), Positives = 27/152 (17%), Gaps = 28/152 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A             I  N+ N +  ++ +                        
Sbjct: 1   MMRSLWTAATGMVAQQLNIDVISNNLANVNTTSFKKSRAEFEDLMYQNMRIAGAATEGDN 60

Query: 47  --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           +++             +             
Sbjct: 61  RIPTGIQVGMGVRPTTVHKFFTQGDYSNTGNSLDLAIEG-------DGFFLVQVNGEDAY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 + + +      +   L       AE 
Sbjct: 114 TRAGAFKLNQDGVVVTANGYTLQPEFTVPAET 145


>gi|260222468|emb|CBA32062.1| hypothetical protein Csp_D30240 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 104

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            W+E + S    L    +  F            V+L  EL  ++  +++Y  + + I   
Sbjct: 34  NWIETSASGQPVLGSPGEGKFGKTRSGALEDSNVDLTGELVNMMTAQRNYQANAQTIKTQ 93

Query: 469 DKMLQTLLEG 478
           D+++ TL+  
Sbjct: 94  DQIMSTLVNL 103


>gi|78777301|ref|YP_393616.1| flagellar basal body rod protein FlgG [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497841|gb|ABB44381.1| Flagellar basal-body rod FlgG [Sulfurimonas denitrificans DSM 1251]
          Length = 262

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             N+         +     +         +        L     N   ++E + S     
Sbjct: 146 ATNINIGTDGTVSVVQAGQAQATQIGQMTLTNFINPAGLHSMGDNL--YIETDSSGQPVE 203

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                     + + +     V L  EL+ LI  +++Y+ ++K+I  +D+MLQT     +
Sbjct: 204 GTPGLDGLGVLRQGFVELSNVELVVELTDLITGQRAYDSNSKVITTSDEMLQTTNNLKR 262



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 53/212 (25%), Gaps = 29/212 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   + +                        
Sbjct: 1   MMQSLYTASTGMIGMQTQINTTANNIANVNTIGFKKSRAEFADLMYKVMDYAGTSTSDVT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V         NK   +  L    + +      + F  L+          +   
Sbjct: 61  KSPTGIEVGLGVRPTAINKVFSEGSLKQTDNELDVAVTGKGFFKLE------LPDGSEVY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +        N     L   V+   +A  +    + +   VQ  +A A +  ++ 
Sbjct: 115 SRNGAFKVDENGSIVNSDGYRLVPEVVIPPDATNINIGTDGTVSVVQAGQAQATQIGQMT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
           ++N        ++ ++      +S        
Sbjct: 175 LTNFINPAGLHSMGDNLYIETDSSGQPVEGTP 206


>gi|89092136|ref|ZP_01165091.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92]
 gi|89083871|gb|EAR63088.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92]
          Length = 634

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 2/170 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
               +                    I+  +    Q+ S             K      + 
Sbjct: 467 VTFTSGATAPSITVSGADPANNATTITLDLTGTTQFASASIVKSSTQDGYTKGDLIGVSF 526

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           +   +++  + +  N++     +A       L         W     S    ++     +
Sbjct: 527 SETGEMVASFSNGQNQDLGVVAIATFENQSGLQP--SGDTEWTATLTSGDAIVNPPGTGL 584

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +  +      V+L  EL  LI+ ++++  ++K I   + + Q +L+ 
Sbjct: 585 NGTLRSAALEQSNVDLSAELVALIEAQRNFQANSKTIETQNTVTQAILQI 634



 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/421 (8%), Positives = 92/421 (21%), Gaps = 26/421 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV----------- 53
           A FN A      AS     I  NI N+    +    T          V            
Sbjct: 2   AGFNTAVTGLKAASTDLDVIGNNIANSSTVGFKTSRTEFGDIYATAVVGAGSSNVAGSGV 61

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           T     ++     +   ++ +        F  L +                   +   + 
Sbjct: 62  TVSDIAQDFQAGTIEFTNNNLDLAINGSGFFQLDDGQGGTT------FTRAGAFQLDKDG 115

Query: 114 YSKNLSEDILGKTVI-DNAEEVVQNFNTSAREVQKIRADADKEIELEIS---NLRRFLSE 169
           +  + S   L    + D    +       +++    +A  D ++   I    +       
Sbjct: 116 FIVSKSGKFLQGYGLDDQGNRLPIGNLAVSQKESPPKATEDIDLSFNIDSREDPTTLTFP 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                 A    + +        ++  +    +                 V  S  T    
Sbjct: 176 YDKDTPASFTYSTTVRTFDSLGNEHTIKYNMVERRPTKDVYSVTTASTAVRISGVTVDPT 235

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK-----GKIKALLQIRDSVVP 284
                     + +     +   +   G V+S    +          +  +      +  P
Sbjct: 236 DGFSAAEIASIEAADSRIDGATLSYSGGVMSFEIKAKYSDYGDVVIEDVSGTPTDITPAP 295

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             ++  +     L    + + P   +   V  +      +       Q   + I      
Sbjct: 296 TERDANEVRLYDLAVPSAAQSPATIDVSGVSIVVTDSMSELDMANTIQAREQEILDRNPA 355

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             + S +  G    +  +                  +          + ++ +       
Sbjct: 356 IESVSVIDAGSGNYQISIRFKAEQGNINPTSYPISITPTGYTGMSLNSTVDGDNGFQGMY 415

Query: 405 R 405
           R
Sbjct: 416 R 416


>gi|34498338|ref|NP_902553.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum
           ATCC 12472]
 gi|34104192|gb|AAQ60551.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum
           ATCC 12472]
          Length = 260

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 55/215 (25%), Gaps = 2/215 (0%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
               P G++         +           +R+      ++     + +     F     
Sbjct: 48  TLRQPGGQLANGNANPTGLQVGTGAAAVASSRIFTQGPPQQTGQPLDLQIQGDGFFRLLQ 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            D      +        N    +      +           +   +           +  
Sbjct: 108 PDGTTAYSRNGQFQRDANGNVVNPDGLPLNPNINIPATAQQITVSSAGVVQYTLAGSAAP 167

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +        L     N   +L+   S               I   +  +  VN
Sbjct: 168 QTAGTILLTTFINPQGLQSIGNNL--YLQTAASGDPQDGNPQTDDRGAIKSGFLESSNVN 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + EEL  +I  ++S+ ++++ +   D+MLQ L   
Sbjct: 226 VTEELVNMITAQRSFEMNSRAVTTADQMLQKLSNL 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 31/241 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A+   + +  Q   +  N+ N +   + +   +                    
Sbjct: 1   MMRALYIAKTGMDTSQFQLDVVSNNLANVNTVGFKKSRGIFEDLYYQTLRQPGGQLANGN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + V T  +   +               +  Q     F  L +          +  
Sbjct: 61  ANPTGLQVGTGAAAVASSRIFTQGPPQQTGQPLDLQIQGDGFFRLLQ------PDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160
               + +        N     L   +   A       +++      +   A  +    I 
Sbjct: 115 SRNGQFQRDANGNVVNPDGLPLNPNINIPATAQQITVSSAGVVQYTLAGSAAPQTAGTIL 174

Query: 161 --SNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             + +     +    N  +    +    D +   D R  +     E   ++      N +
Sbjct: 175 LTTFINPQGLQSIGNNLYLQTAASGDPQDGNPQTDDRGAIKSGFLESSNVNVTEELVNMI 234

Query: 218 V 218
            
Sbjct: 235 T 235


>gi|288940411|ref|YP_003442651.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM
           180]
 gi|288895783|gb|ADC61619.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM
           180]
          Length = 263

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 2/177 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  +   + +       F    +   +    +  S  +  + +   +  +      
Sbjct: 81  FAQGNYIQTGNSLDMAIEGQGFFQILMPGGEIGYTRDGSFQLNADGEVVMSNGYALQPAL 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           V      ++         I               +A       L     N   + E   S
Sbjct: 141 VIPADAESITIGKDGTVSIKQPNQVGEVQIGQIQLANFINPAGLQPIGENL--FRETTAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            +       +  F  + +    T  VN+ EEL  +I+ +++Y +++K I   D MLQ
Sbjct: 199 GAPQQSNPGENGFGSLVQCSLETSNVNMAEELVNMIETQRAYEVNSKAISAADSMLQ 255



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/183 (6%), Positives = 38/183 (20%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + +  N+ N +   + +   +                    
Sbjct: 1   MNQALWIAKTGLDAQQTRMSVVSNNLANVNTTGFKKGRAVFEDLIYHSCRQHGAQATQET 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +T+ T                    +++      Q F  +               
Sbjct: 61  QLPSGLTIGTGVRTVATQKLFAQGNYIQTGNSLDMAIEGQGFFQIL------MPGGEIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + + +      +   L   ++  A+              K      +    +I 
Sbjct: 115 TRDGSFQLNADGEVVMSNGYALQPALVIPADAESITIGKDGTVSIKQPNQVGEVQIGQIQ 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|209966998|ref|YP_002299913.1| flagellar hook protein FlgE [Rhodospirillum centenum SW]
 gi|209960464|gb|ACJ01101.1| flagellar hook protein FlgE [Rhodospirillum centenum SW]
          Length = 655

 Score = 75.1 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/421 (10%), Positives = 89/421 (21%), Gaps = 23/421 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT------ 54
           MS+      A       S+    I  NI N+    Y R +T                   
Sbjct: 1   MSVFGAMTTAVGGLTAQSRSLGHISDNIANSQTIGYKRVETSFQNLITQSNSSVHSPGGV 60

Query: 55  -QRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL---KEMMSADDHYNNSPTHYISKLRDS 110
             R    N     +     A         F  +   +E+    +  + +           
Sbjct: 61  RARPSYTNNIQGNVSQTQFATNMAISGSGFFQVSRGEEVSGTVNFQSQAYFTRAGDFSLD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELEISNLRRFLS 168
              Y +N +   L    + +   VV+        VQ++  +  A   I L  +       
Sbjct: 121 KNGYLRNSAGYYLNGWGLRSGTNVVERGTPQPIRVQQLIDNPTATTNINLTANLPLTPNP 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           E  +    I     +       L+ R          +            ++ T +  ++ 
Sbjct: 181 EQPLPTSEINIIDRNGETRTVNLNWRKQGDNNWRLDVEAPGSSLQPVGDLLSTGNPQSIG 240

Query: 229 ETVPRDINFEK---------MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             V    +              +   T     I I+    +    S      +   L  +
Sbjct: 241 PEVQIIPSTTPVQQVSTASFSAATPTTGTDYSITINNKTFTYKAQSYDTNASVAGQLVNQ 300

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC--QGISET 337
                 F N    +                          A             Q +   
Sbjct: 301 IYADGSFTNYTFAIDPATSAITVTGPTEGTQFTFKASYDAAAATPTTAGVPGVKQQVFLP 360

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +        +   +  GG                  +        N N      A ++  
Sbjct: 361 LSGIAGDVGDEFTIPFGGGTESVSYLTDGTEPDLKTIATKLASKINSNNDSPYTATVSGA 420

Query: 398 V 398
            
Sbjct: 421 G 421



 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 104/393 (26%), Gaps = 8/393 (2%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-----AREVQK 147
               + S T          +SY  N S        I                  A  V  
Sbjct: 266 TTGTDYSITINNKTFTYKAQSYDTNASVAGQLVNQIYADGSFTNYTFAIDPATSAITVTG 325

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                    +          +   V     +        A D  D+  +     +E +  
Sbjct: 326 PTEGTQFTFKASYDAAAATPTTAGVPGVKQQVFLPLSGIAGDVGDEFTIPFGGGTESVSY 385

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
            T     +   + T   + +              +  +              +       
Sbjct: 386 LTDGTEPDLKTIATKLASKINSNNDSPYTATVSGA-GLMLTRKDFTAPVAANNGMGAYTT 444

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             G+  A + ++     + ++             S       ++     +   +G +++ 
Sbjct: 445 TGGQTPAHVSVQFGEGGVLKSLTSTNVGSGNAQVSATQAEGDDAFITFTVDYGNGPQEIR 504

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
             + +  S    +      N            +  +    +    +++ +Y +  ++   
Sbjct: 505 LNIGKFGSSVNGLTQFAGENIETFNLTQDGFTRGAFRDLTILASGEVVANYDNGRSRVLA 564

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
             P+  ++    + +   +   ++    S +       +    ++  S      V++ +E
Sbjct: 565 QIPIFQVSNPNGMQK--TDGNAYVATTDSGAVRASGAGENGAGNLVVSSIEGSNVDIADE 622

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + LI  +++Y+ + +++   + ML  +L   +
Sbjct: 623 FTKLIVTQRAYSANTRVVTSANDMLVEVLNLGR 655


>gi|330975977|gb|EGH76043.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 581

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/364 (9%), Positives = 93/364 (25%), Gaps = 15/364 (4%)

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRRFLSELTVVN 174
            +       +  ++   +   +++ + + + K+   +   +  +  + +    +    +N
Sbjct: 231 VDPDSVAPLQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQVNGAWAANGSLN 290

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   +   A        V+ + +             +        G  +F++    
Sbjct: 291 GGAVSLPLNDAGASLLDPGDTVMHRPV-------PDFNPADLNTYSRMFGNQIFDSQGNT 343

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
              ++      T+      +       N  S  P   + A +                ++
Sbjct: 344 HELKQYFVKDGTNSWRMHALIDDRNPQNSASTTP---LTANIVFDSHGAVASLTGSPGLS 400

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                            +          I +       GI+       Q+ +  S     
Sbjct: 401 SNGTQLKLTGWSPVMAVDPGTARE--RWISNGAAGSADGITIDFTRLLQHNATSSRSAAY 458

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                        +     L   + +   K+     +A       L    R+        
Sbjct: 459 VDGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP--RSDTRGTATA 516

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   +  +        I         V L +EL  LI+ + +Y  ++K I     ++QT
Sbjct: 517 DSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQT 576

Query: 475 LLEG 478
           L++ 
Sbjct: 577 LIQS 580



 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/447 (6%), Positives = 96/447 (21%), Gaps = 18/447 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +   +    +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+         ++Q   ++        ++      + L  +     F  
Sbjct: 122 RLQGYAANDKGEIASGIR---TDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDP 178

Query: 182 ASKHDAHDFLDQRDV---------LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                      +               ++ +    +   + +  ++V   +        P
Sbjct: 179 DDPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRNPVDPDSVAP 238

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV--PIFQNQL 290
             ++ E     +++   N   +  V  +                   +  +        L
Sbjct: 239 LQVSLELKPDGSLSYSGNDQHLSKVSDTEFALQGWVPAAQVNGAWAANGSLNGGAVSLPL 298

Query: 291 DEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSF 350
           ++    L+              N   L     +        QG +  +          S+
Sbjct: 299 NDAGASLLDPGDTVMHRPVPDFNPADLNTYSRMFGNQIFDSQGNTHELKQYFVKDGTNSW 358

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
                   +    +        +++     +         ++   T + L  ++      
Sbjct: 359 RMHALIDDRNPQNSASTTPLTANIVFDSHGAVASLTGSPGLSSNGTQLKLTGWSPVMAVD 418

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYS 437
               R                I  +  
Sbjct: 419 PGTARERWISNGAAGSADGITIDFTRL 445


>gi|225871934|ref|YP_002753388.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196]
 gi|225793054|gb|ACO33144.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196]
          Length = 409

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/475 (7%), Positives = 93/475 (19%), Gaps = 68/475 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
           + F+        +S    +I  N+ N +   +  +                       + 
Sbjct: 2   SSFSIPLTGLEASSTSLDTIANNLSNMNTTAFKSQQASFG---------------DLFYQ 46

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
           ++ ++ S    +        A     +            ++           +       
Sbjct: 47  QIGNSGSGDPLEVGAGVQVAATNTNFTQGTVSETGNATDVALNGSGFFVVRNSDGTPAYT 106

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           +                                                       T   
Sbjct: 107 RDGNFTLTSSGDL-------------------------------------------TTQG 123

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             A       + ++   S +  I   V            G T        +      +  
Sbjct: 124 GQAVMGYPAANGVVNTNSALSPIQIPVGQVEQPQASQKFGLTANLNSSAAVGTNFSATVP 183

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                       V  +    +                       Q D    ++  + +  
Sbjct: 184 TYDSLGQTQDVTVNFTKTATNTWSYSLALPAGASTGGTGLTGTLQFDNNGNLISPAANVS 243

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                   +       +      N              Q  +   +            + 
Sbjct: 244 GISFTGLTDGASNMNLNWNLYGSNGT--------STISQVDTTSGYSGTTTDGYPSGQYT 295

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              +     +   + +   +      +A I     L     N   +     S S  + + 
Sbjct: 296 GFTIGADGTVSAQFSNGQTQAVGQLALASITNEQGLQLDGGNL--YQTTLASGSASIGLA 353

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                  + +S      VN+  E S L+  + +Y  S+K +   D++ Q  +  +
Sbjct: 354 GSAGLGTVQDSALEGSNVNISTEFSNLVVAQNAYEASSKALTTFDQVAQDTINII 408


>gi|281600495|gb|ADA73479.1| Flagellar hook protein FlgE [Shigella flexneri 2002017]
 gi|332761421|gb|EGJ91705.1| flagellar hook protein flgE [Shigella flexneri K-671]
 gi|333019459|gb|EGK38742.1| flagellar hook protein flgE [Shigella flexneri K-304]
          Length = 379

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/378 (9%), Positives = 77/378 (20%), Gaps = 9/378 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N     
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLLNTQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +      +Q               A K        +    S+            A
Sbjct: 116 LTGYPVTGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNA 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             ++    +   D         +       NN  +    S            + F    +
Sbjct: 176 DSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGT 235

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               + +N I      + +   +    G + +     D  V    +         I   +
Sbjct: 236 LVDGAMANNIATGANNIVATTQNGYKPGDLVSYQINDDGTVVGNNSNEQTQLLGQIVLAN 295

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             +     SE                      +     N    ++   L           
Sbjct: 296 FANNEGLASEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQ 355

Query: 363 WNVKNLAGYPDLINHYCD 380
            N K+ A      +   +
Sbjct: 356 RNYKSNAQTIKTQDQILN 373



 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/390 (11%), Positives = 104/390 (26%), Gaps = 13/390 (3%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
             S      N+    +  + +++ + +    +          A   V      A   Q  
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
                      +           +V+       +         + R++L  +  ++ G  
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFK-LDENRNLLNTQGLQLTGYP 120

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                            ++  T+         +     + S+P+       +SN  S   
Sbjct: 121 VTGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNSSDPLPTVTPFSASNADSYNK 180

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           KG +          V   Q    +M+   + +      +     + P            N
Sbjct: 181 KGSV---------TVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPNSIAKTATTLEFN 231

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +   +  N    +N + +    +  K        +     ++ +  +   +    
Sbjct: 232 ANGTLVDGAMANNIATGAN-NIVATTQNGYKPGDLVSYQINDDGTVVGNNSNEQTQLLGQ 290

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A    N  L     N   W     S    L       F  ++        V+L +EL
Sbjct: 291 IVLANFANNEGLASEGDNV--WSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKEL 348

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +I  +++Y  + + I   D++L T +  
Sbjct: 349 VNMIVAQRNYKSNAQTIKTQDQILNTRVNL 378


>gi|254445900|ref|ZP_05059376.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium
           DG1235]
 gi|198260208|gb|EDY84516.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium
           DG1235]
          Length = 260

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 2/162 (1%)

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                   +  L               +N   +      +         +     +    
Sbjct: 101 FFRVTGPDNETLYTRDGAFKVGPTGEVTNSQGMTAIDFAAPPAGTTKVVINDTGGVTYLA 160

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            DS          A    +  LL    N   + E + S +  +          + + Y  
Sbjct: 161 DDSDVLGRGQLQTARFRNSSGLLALGGNL--FRETDASGAPTVGNPGADGSGTLQQGYLE 218

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           T  VN+ EE+  +I  +++Y I++K I  +D M+Q + +  +
Sbjct: 219 TSNVNIVEEMVNMILAQRAYEINSKSIQTSDSMMQQVAQLKR 260



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/161 (8%), Positives = 25/161 (15%), Gaps = 26/161 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      A +           I  NI N     + +                        
Sbjct: 1   MSISLYSAASGMEAQQTNLNVISNNIANVSTTGFKKSKVEFQDMFYQVPKSVGADSGGNI 60

Query: 47  -PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            P  + V T               +      +    +   F  +          N +   
Sbjct: 61  LPTGIQVGTGTQVVSTSKVFTQGQVSQTGEQLDVAIVGDGFFRV------TGPDNETLYT 114

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                +        N             A       N +  
Sbjct: 115 RDGAFKVGPTGEVTNSQGMTAIDFAAPPAGTTKVVINDTGG 155


>gi|153940920|ref|YP_001391955.1| flagellar hook protein flgE [Clostridium botulinum F str.
           Langeland]
 gi|152936816|gb|ABS42314.1| flagellar hook protein flgE [Clostridium botulinum F str.
           Langeland]
 gi|295319974|gb|ADG00352.1| flagellar hook protein flgE [Clostridium botulinum F str. 230613]
          Length = 345

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 81/326 (24%), Gaps = 21/326 (6%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +  +   F  Q       +S+ +  +T    N         G  +        
Sbjct: 20  DIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIYTK 79

Query: 236 NFEKMNSYTVTS-----ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF-QNQ 289
                   T  +     +    FI G    ++Q S + +    A     D        + 
Sbjct: 80  FTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEATGDAQAGSIDGKSSTMDISF 139

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL--CQGISETICVNPQYRSN 347
             + +  L    +                        D      +             ++
Sbjct: 140 TRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYDAGTGEAKMAFVDADSKALKAAD 199

Query: 348 PSFLRDGGSVSKKFLWNVK-------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
            S       +  +   + K       ++     L+    +  +       +A       L
Sbjct: 200 DSKKLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNGKSAALGQVAMASFKNEGGL 259

Query: 401 LEYARNSIGWLEKNRSD------SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
            +  +N       +               ++   +  +         V+L EE + +I  
Sbjct: 260 EKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGMIEMSNVDLAEEFTEMIVA 319

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++    K+I   D++LQ L+   +
Sbjct: 320 NRAFQACGKMITTGDEILQELVNLKR 345



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/209 (6%), Positives = 36/209 (17%), Gaps = 46/209 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE--------------- 84
                     V V              +      +        F                
Sbjct: 61  GTNPRQVGLGVQVAGI---YTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIIT 117

Query: 85  -----ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139
                A    +       +             E          +    + +       ++
Sbjct: 118 EATGDAQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYD 177

Query: 140 TSAREVQKIRADADKEIELEISNLRRFLS 168
               E +    DAD +      + ++ + 
Sbjct: 178 AGTGEAKMAFVDADSKALKAADDSKKLIP 206


>gi|227815505|ref|YP_002815514.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. CDC
           684]
 gi|227007204|gb|ACP16947.1| flagellar hook-associated protein FlgK [Bacillus anthracis str. CDC
           684]
          Length = 202

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 36/105 (34%)

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                                 ++  +     +  +  ++S  +        +   I + 
Sbjct: 98  MKISAETANKLAAITDGNYKEGLSYKQALDQFVVGVASDKSAVNAYQKIHVDLLEGIQQE 157

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 158 KMGIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 202


>gi|206890777|ref|YP_002249848.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742715|gb|ACI21772.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 262

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 6/185 (3%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDGG 355
            +  +      + +          +   D  +    +    ++       ++   +  G 
Sbjct: 81  FTPGDLINTGNDLDLAIDGDGFFQVTLPDGTIAYTRAGNFRIDKDGRIVTNDGYPIEPGI 140

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +V            G   ++     +  +      +A       L    RN   +LE + 
Sbjct: 141 TVPADATKITFGADGTVTVLQPGTVAPVQ-IGTVELARFINPGGLQAIGRNL--FLETDA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +             I + +     VN+ EEL+ +I  +++++I++K +  +D+MLQT+
Sbjct: 198 SGTPTTGTPGTEGRGKIVQGFLEMSNVNIVEELANMIIAQRAFDINSKAVQTSDEMLQTV 257

Query: 476 LEGVK 480
               +
Sbjct: 258 AALKR 262



 Score = 68.5 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 25/152 (16%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L     A             I  N+ N +   + +                        
Sbjct: 1   MLRSLFTASTGMYAQQLNLDVISHNLANVNTTGFKKGRAEFQDLLYQNVINPGAPSDDGT 60

Query: 47  --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V          K      L    + +        F  +               
Sbjct: 61  QYPSGIQVGLGVRPVAVAKFFTPGDLINTGNDLDLAIDGDGFFQV------TLPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 R   +          +   +   A+ 
Sbjct: 115 TRAGNFRIDKDGRIVTNDGYPIEPGITVPADA 146


>gi|37525843|ref|NP_929187.1| flagellar basal-body rod protein FlgG (Distal rod protein)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785272|emb|CAE14213.1| Flagellar basal-body rod protein FlgG (Distal rod protein)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 260

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 2/161 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
           F    + D  +   +  S     N Q  +   FL            ++   +     +  
Sbjct: 102 FFQVQLPDGTSAYTRDGSFQEDQNGQLTTANGFLIFPTITIPDNATDLTISSDGIVSVKV 161

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              S  +      +     +  L     N   ++E + S     +         +   Y 
Sbjct: 162 QGQSVPQQVGQFTLTTFINDSGLESIGENL--YVETSSSGVPIENTPGINGAGLLQHKYV 219

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            T  VN+ EEL  +I+ +++Y +++K +  +D+MLQ L + 
Sbjct: 220 ETSNVNIAEELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQL 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 28/142 (19%), Gaps = 33/142 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAIFEDLLYQNIRQPGAMSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       + F  ++           
Sbjct: 61  RLPSGLQIGTGVRPVATERIHSQ---GNLSETNNSHNVAIRGKGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSE 120
           S        ++         + 
Sbjct: 112 SAYTRDGSFQEDQNGQLTTANG 133


>gi|238755322|ref|ZP_04616665.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473]
 gi|238706458|gb|EEP98832.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473]
          Length = 260

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D  N   +  S  +  N Q  +   F             ++    
Sbjct: 94  DIAIKGQGFFQVQLPDGTNAYTRDGSFQMDQNGQLVTASGFQVQPAITIPANALSITVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +  +      +     +  L     N   + E   S + +         
Sbjct: 154 DGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESVGENL--YQETASSGAPNESTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVTTSDQMLQKLTQL 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGQGFFQVQLPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +          S   +   +   A  +
Sbjct: 118 GSFQMDQNGQLVTASGFQVQPAITIPANAL 147


>gi|226327742|ref|ZP_03803260.1| hypothetical protein PROPEN_01615 [Proteus penneri ATCC 35198]
 gi|225203446|gb|EEG85800.1| hypothetical protein PROPEN_01615 [Proteus penneri ATCC 35198]
          Length = 111

 Score = 75.1 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +     +  L     N   +LE   S +   +         + + Y  T  VN
Sbjct: 19  QQVGQLTLTTFINDSGLESVGENL--YLETASSGAPTENAPGINGAGLLYQGYVETSNVN 76

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 77  VAEELVNMIQTQRAYEINSKAISTSDQMLQKLTQL 111


>gi|270262399|ref|ZP_06190670.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13]
 gi|270043083|gb|EFA16176.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13]
          Length = 260

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S  I  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSQAYTRDGSFQIDQNGQLVTASGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     +  L     N   + E   S 
Sbjct: 142 IPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESVGENL--YQETESSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +      
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSQAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +          S   +   +   A  +
Sbjct: 118 GSFQIDQNGQLVTASGFQVQPAITIPANAL 147


>gi|222053611|ref|YP_002535973.1| protein of unknown function DUF1078 domain protein [Geobacter sp.
           FRC-32]
 gi|221562900|gb|ACM18872.1| protein of unknown function DUF1078 domain protein [Geobacter sp.
           FRC-32]
          Length = 293

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 51/200 (25%), Gaps = 4/200 (2%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           + V     Q             +KD    N +    L  A              + +  V
Sbjct: 98  TTVAPVAAQNAAFLSRAGAFHVDKDLYLVNPDGYQVLDTAGQPIRFYTGGTADQNFSKVV 157

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             +     ++L   G  +  +                           D         +L
Sbjct: 158 KVEPNGLITYLAQDGITNLYYSTTGVAGLPTTTANAAAVQRLAVVSATDLSGLEKAGGSL 217

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +           + +       +       +  +      V+L  +   +I  +++Y+ 
Sbjct: 218 YKA----TATSGVSAAGFTLAGNQPNGTSEKVLSNSLEQSNVDLASQFVKMIITQRAYSA 273

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           ++K I   D+M Q +L   +
Sbjct: 274 NSKTITTADEMTQEVLNLKR 293



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 33/152 (21%), Gaps = 10/152 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52
           MS+ +      +   N  +    I  NI N +   +     + +                
Sbjct: 1   MSITSAMFTGVSGLLNNGEAMNVIGNNISNVNTVGFKGARMLFSDMLSQNIGNNSQIGRG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISKLRDS 110
           +  +            +  +         SF ALK    ++     N +           
Sbjct: 61  MQIQKVENLFGQGSFESTENVTDLGIQGNSFFALKPPTTVAPVAAQNAAFLSRAGAFHVD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
            + Y  N     +  T                
Sbjct: 121 KDLYLVNPDGYQVLDTAGQPIRFYTGGTADQN 152


>gi|315636308|ref|ZP_07891558.1| flagellar hook protein FlgE [Arcobacter butzleri JV22]
 gi|315479397|gb|EFU70080.1| flagellar hook protein FlgE [Arcobacter butzleri JV22]
          Length = 723

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 104/396 (26%), Gaps = 21/396 (5%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   L   + N + D L       A   + +      +++ +    + +I   +
Sbjct: 333 NSGSGGMVAYLAKNTSNPTLDTLDPNGTYEASTEISDMLQGVIQIKSLIPGTEFKITE-V 391

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN---NNDM 217
           S                              D RD L + ++         ++   +   
Sbjct: 392 SETTTGTDTTVKGTYQSTATAVMGTGKAALEDARDALSRLVTGNQQSVYTTQDLYGDATA 451

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVT----------SESNPIFIDGVVVSSNQGSAV 267
              T +         +D+ ++                  +    + +D +V   N  +  
Sbjct: 452 ATSTREYKFSITIYDKDLGYDIPVPNDGNVPPNAVPIVINAGTGVTLDDIVTEINNQTTA 511

Query: 268 PKGKIKALLQIRDSV---VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
              ++   +  ++     V    +   ++      ++++         +   + +     
Sbjct: 512 SGPQLGDYITAKNVNGYLVIETNDGNYDVEFDAALTYTDPTNPTTPVTDDTLIEVNPDYS 571

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                  + +  T  V+     +   LR          +   ++     LI         
Sbjct: 572 GRKGAGAEFMEITTRVDQTSTQSSLQLRLDKLGISDSKFGSFSVDETG-LITITEGGVQY 630

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A    N  LL    N   +     S        +      +          +L
Sbjct: 631 AVGQVSIARFTNNQGLLAVGNN--NFQATQESGKAIYSTNNNNTAG-MQGKTLELSEADL 687

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E L  L+  ++++  + K I   D+ML TL+   +
Sbjct: 688 SESLVNLMVFQRAFEANAKSITTADEMLTTLINLKR 723



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/439 (7%), Positives = 93/439 (21%), Gaps = 14/439 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   + +    +   N+ N +   Y               +          
Sbjct: 1   MIGALWTGVSGLASQTTAIDNESNNVANVNTVGYKASRISFADQIYQNQIGKGSYVQDAE 60

Query: 62  --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  +               F  +            +       LR       +   
Sbjct: 61  KLFTQGSMKVTGVDYDVALQGDGFFTVINK--NTLGTAETFYTRAGNLRMGDSGTLQTAD 118

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +    + + +E   +  ++     +  +   K I+  I     ++  +      +  
Sbjct: 119 GYEVQGWAMSSIDE-KNDVISTNSNATRFTSAFTKNIDSAIIKHNDYIETIAAKTTNVDE 177

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGIS-TIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            T S   A      +     K S++  I       +N +  Y  D     +     ++  
Sbjct: 178 TTKSDSTAVFSGAGQ---KTKASKLKDIELATENYSNLLTKYQEDPDASSKGSISQVSQV 234

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +    +       D + V  N  +      +    +   + +    +  +     L+
Sbjct: 235 NFRTGVPPTSIIGKEGDSIKVVINGNTYTQPFVVTKSTETYRTDIWNSLDATERTLYGLV 294

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                   I+G         IA   K                N       ++L    S  
Sbjct: 295 D----PATISGLPAANQEAEIAKYDKIAGKIETYKAMADKISNSGSGGMVAYLAKNTSNP 350

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +          I+       +     P                        +S +
Sbjct: 351 TLDTLDPNGTYEASTEISDMLQGVIQIKSLIPGTEFKITEVSETTTGTDTTVKGTYQSTA 410

Query: 419 HDLHMKSQVVFNHISESYS 437
             +    +       ++ S
Sbjct: 411 TAVMGTGKAALEDARDALS 429


>gi|229132566|ref|ZP_04261415.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST196]
 gi|228650912|gb|EEL06898.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST196]
          Length = 407

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 3/183 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADG-IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             F E     G+                        ++        + +  +        
Sbjct: 227 TEFKEVQGAGGDVTFDAVGKPNQQKPGASIPFNGGTVNLDFSKLTNHPTEKTLAVTDVDG 286

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                     +A    ++  Y D   K      VA       L++       +   N + 
Sbjct: 287 RAAATVKDCFIADGGYVMVKYSDGSMKAAGQLAVAMFPNEGGLMKNGNG--NYTATNTTG 344

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              + +  Q     +  S      V+L  E   L+  ++ +  + K+I  +D++L  ++ 
Sbjct: 345 ILAMGVSGQNGAGKVRGSAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404

Query: 478 GVK 480
            ++
Sbjct: 405 LIR 407



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/282 (8%), Positives = 56/282 (19%), Gaps = 38/282 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     +    N      +    NI NA    Y ++  M                    
Sbjct: 1   MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGSKGDDKYAG 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +        +  D  +               F  + +    +       
Sbjct: 61  TNPKSIGNGVKMSG---TVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNTE----- 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S + Y  N     +     + A   V   +     +Q     A   I    
Sbjct: 113 FTRKGTFGISSDYYITNTEGQYVFAYPANAATGEVDL-SGIPGPLQIPMGSAIGGIRTSK 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +   +                  +      +      + +    +     +  +    
Sbjct: 172 GVVGGNIPADAKQITQELPAYDDAGNTWTMRVEFTQ-TSEHNYKYTVHMRNDSKKETEFK 230

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
              G         D+ F+ +           I  +G  V+ +
Sbjct: 231 EVQG------AGGDVTFDAVGKPNQQKPGASIPFNGGTVNLD 266


>gi|226939372|ref|YP_002794445.1| flgG [Laribacter hongkongensis HLHK9]
 gi|226714298|gb|ACO73436.1| flgG [Laribacter hongkongensis HLHK9]
          Length = 260

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 2/195 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++         + R       ++   A +       F    + D      +  +  +  
Sbjct: 65  GLLVGTGAAPVAVDRQFSPGNLQQTNNALDMAINGRGFFTIQMPDGTIGYTRDGTFKLDD 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             Q  ++  FL D      +   ++         +     +  +      +A       L
Sbjct: 125 QGQLVTSQGFLVDPQITVPQGAKSISVSKDGIVSVVLPGQTQPQQIGQMQLADFINPQGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   +LE   S +  +   +      I +++     VN+ EEL  +I+ +++Y +
Sbjct: 185 EPIGGNL--YLETAASGAPTVANPTNDGTGAIQQTFLEASNVNVTEELVEMIQAQRAYEL 242

Query: 461 SNKLIMFTDKMLQTL 475
           +++ I  +D ML  L
Sbjct: 243 NSRGIKTSDDMLARL 257



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 52/234 (22%), Gaps = 31/234 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     ++   +++  +   I  N+ N +   + +   +                    
Sbjct: 1   MLRSLYISKTGMDSSQFRLDVITNNLANVNTTGFKKGRAVFEDLMYQTIRQPGAQSSQNT 60

Query: 46  -SPENVTVVTQR---SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T     + ++      L   ++A+      + F  ++              
Sbjct: 61  MLPTGLLVGTGAAPVAVDRQFSPGNLQQTNNALDMAINGRGFFTIQ------MPDGTIGY 114

Query: 102 HYISKLRDSLESYSKNLSE---DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 +   +           D             V      +  +             
Sbjct: 115 TRDGTFKLDDQGQLVTSQGFLVDPQITVPQGAKSISVSKDGIVSVVLPGQTQPQQIGQMQ 174

Query: 159 EISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
               +     E    N  +    + +   A+   D    + Q   E   ++   
Sbjct: 175 LADFINPQGLEPIGGNLYLETAASGAPTVANPTNDGTGAIQQTFLEASNVNVTE 228


>gi|124268252|ref|YP_001022256.1| flagellar basal body and hook protein [Methylibium petroleiphilum
           PM1]
 gi|124261027|gb|ABM96021.1| flagellar basal body and hook protein [Methylibium petroleiphilum
           PM1]
          Length = 260

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R       ++     +       F    + D      +  +  +    Q  +N  ++
Sbjct: 76  ATSRQFSQGSLQQSTNPLDLAVKGQGFFQIQLPDGTTGYTRDGAFQVSAQGQLVTNNGYV 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G        NV   A     +     +  +      +A       L     N     
Sbjct: 136 VQPGITIPANAQNVTIGADGNVSVTLPGQAAAQTVGQIQLASFVNPAGLEPRGENLYT-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + +           I++ +     VN+ EEL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ETAASGTPNAGAPDSNGLGAIAQGFVEGSNVNVVEELVAMIQTQRAYELNSKAIQTSDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQKLAQL 260



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/180 (7%), Positives = 40/180 (22%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++        Q   I  N+ N+    Y R   +                    
Sbjct: 1   MMRSLWISKTGMEAQQTQLDHISHNLANSATNGYKRSHAVFEDLMYQTIRQPGANSSEQT 60

Query: 46  -SPENVTVVTQRSE---NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +         ++      L   ++ +      Q F  ++           +  
Sbjct: 61  QLPTGLQLGLGTRAVATSRQFSQGSLQQSTNPLDLAVKGQGFFQIQ------LPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + S +      +  ++   +   A                +   A  +   +I 
Sbjct: 115 TRDGAFQVSAQGQLVTNNGYVVQPGITIPANAQNVTIGADGNVSVTLPGQAAAQTVGQIQ 174


>gi|157371205|ref|YP_001479194.1| flagellar basal body rod protein FlgG [Serratia proteamaculans 568]
 gi|157322969|gb|ABV42066.1| flagellar basal-body rod protein FlgG [Serratia proteamaculans 568]
          Length = 260

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S     N Q  +   F      +
Sbjct: 82  SQGNLSQTNNSKDIAIKGQGFFQVMMPDGTLAYTRDGSFQRDQNGQLVTASGFQVQPAII 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     +  L     N   + E   S 
Sbjct: 142 IPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESMGENL--YQETESSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 30/156 (19%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       Q F  +            
Sbjct: 61  TLPSGLQIGTGVRPVATERLHSQ---GNLSQTNNSKDIAIKGQGFFQVM------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                    +          S   +   +I  A  +
Sbjct: 112 LAYTRDGSFQRDQNGQLVTASGFQVQPAIIIPANAL 147


>gi|322832566|ref|YP_004212593.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602]
 gi|321167767|gb|ADW73466.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602]
          Length = 260

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 2/179 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  +   + +       F    + D      +  S  +  N Q  ++  +      
Sbjct: 81  FSQGNLSQTSNSKDIAVKGEGFFQVQLPDGTTAYTRDGSFQVDQNGQLVTSSGYQVIPAI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  ++         +     +  +      ++    N  L     N   + E   S
Sbjct: 141 TVPANALSMTVGRDGIVSVTTQGQTAAQQVGQLTLSTFINNSGLESLGENL--YQETQSS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            +             + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L
Sbjct: 199 GAPTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDEMLQKL 257



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/156 (7%), Positives = 31/156 (19%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIPSLYIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+            L   S++       + F  ++           
Sbjct: 61  NLPSGLQIGTGVRPVSTERL---FSQGNLSQTSNSKDIAVKGEGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           +        +          S   +   +   A  +
Sbjct: 112 TAYTRDGSFQVDQNGQLVTSSGYQVIPAITVPANAL 147


>gi|254755230|ref|ZP_05207264.1| flagellar hook-associated protein FlgK [Bacillus anthracis str.
           Vollum]
          Length = 239

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 36/105 (34%)

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                                 ++  +     +  +  ++S  +        +   I + 
Sbjct: 135 MKISAETANKLAAITDGNYKEGLSYKQALDQFVVGVASDKSAVNAYQKIHVDLLEGIQQE 194

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                GVN++EE+  L+  ++ +  ++K I   +++  +L   ++
Sbjct: 195 KMGIEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSIIR 239


>gi|268589980|ref|ZP_06124201.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM
           1131]
 gi|291314698|gb|EFE55151.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM
           1131]
          Length = 260

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+       K     +       F+   + D  +   +  +     + Q  ++  + 
Sbjct: 76  ATMRIHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQ 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                +      ++         I  Y D+  +      +     +  L     N   ++
Sbjct: 136 IVPAIMIPDNANSLSIARDGTVTITVYGDNQPQQIGQITLTTFINDAGLESMGENL--YM 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + +           + ++   T  VN+ EEL  +I+ +++Y I++K +  +D+M
Sbjct: 194 ETASSGAPNESAPGTNGAGLLYQNMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQRLTQL 260



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 13/44 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A+   +        I  N+ N     + R+  +    
Sbjct: 1  MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDL 44


>gi|187778772|ref|ZP_02995245.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC
           15579]
 gi|187772397|gb|EDU36199.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC
           15579]
          Length = 266

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 44/193 (22%), Gaps = 24/193 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47
           M LL     +++       +  SI  N+ N +   Y R D                    
Sbjct: 2   MILLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSD 61

Query: 48  -----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                    V             +L    +        Q F  +           N    
Sbjct: 62  RPEIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MPDGNYAYE 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                         + + + L   +   A   + N      +     A+       ++  
Sbjct: 116 RSGNFVIDRNGMLVDENGNRLEIQLQQPAGSQILNRIGGFNKNNINIAEDGSISAKDVDG 175

Query: 163 LRRFLSELTVVND 175
           + + + ++ + N 
Sbjct: 176 INKMIGKINIYNA 188



 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +     +   +   RN        +   
Sbjct: 153 GGFNKNNINIAEDGSISAKDVDGINKMIGKINIYNAVGSDAFVSIGRNLY----IPQEGV 208

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +        +       +     V+  +E++ +I  ++++ +S++ I   D+M
Sbjct: 209 NVFVNNDVSMLQ----GFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEM 257


>gi|222823151|ref|YP_002574724.1| flagellar hook protein FlgE [Campylobacter lari RM2100]
 gi|222538372|gb|ACM63473.1| flagellar hook protein FlgE [Campylobacter lari RM2100]
          Length = 814

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               S  +     G        +         +   + +          +A    N+ L 
Sbjct: 678 YDKDSATTKQETDGYTGGNLKPDALRTDENGYIYGEFTNGKTLALAKVALATFPNNMGLE 737

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           E   N   +     S +  +    +     +  S      V+L   L+ LI +++ Y  +
Sbjct: 738 EMGNNL--YKATANSGTATIGHAGEGGRGGLKGSAIEMSNVDLSRALTELIVIQRGYQAN 795

Query: 462 NKLIMFTDKMLQTLLEGVK 480
           +K I  +D++L TLL+  +
Sbjct: 796 SKTITTSDQLLNTLLQLKQ 814



 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/422 (6%), Positives = 82/422 (19%), Gaps = 41/422 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++       +              NI N +   +       +                  
Sbjct: 1   MMRSLWAGVSGLQAHQYAMDVEGNNIANVNTFGFKYSRADFSTLMSQTSKIATAPDGNLG 60

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                       V +    +       +               F      + ++D     
Sbjct: 61  GKNPMQVGLGAGVNSTTRIHSQ---GNIQTTDKNTDMAINGDGFF-----IVSNDGGTTQ 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        + +   +     +     + +  +    V              
Sbjct: 113 FFTRAGDFKTDAVGNFVDNNGYTVQGWNYNQETGQIDSSKSVTDIVIPPGMSMPARPSSS 172

Query: 160 IS-----NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI-----ST 209
           +S     +    L         I    +      D     D      +E           
Sbjct: 173 VSLTANLDSGNTLGTNASAKRPIYALDSLHGGRKDTGTTIDENDTGHTEFYTTSKSGAQV 232

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
             +  +  VV+ + G  L     + I     ++   ++ +    +         G+    
Sbjct: 233 TEKGVDMGVVFNAQGEGLNLRDGQGIWVSYADAKHTSNATMATDLPTDPAQWTNGNHTFW 292

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G       + D  +     + + + +    +                        D    
Sbjct: 293 GYKDGGDAVLDITINGVHIRAEGVGKDTFLNAINAKTSETGVVASIVNNQFVFTNDNSTG 352

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                     V  Q  +  + +  G   +     ++   A   + +     +   N + +
Sbjct: 353 TTAKSKNLNIVVNQGNTVGAQVTVGKGDTPGARLSLNRTAFNNNPMAAILGTNANNIMKN 412

Query: 390 PV 391
            V
Sbjct: 413 NV 414


>gi|294013086|ref|YP_003546546.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S]
 gi|292676416|dbj|BAI97934.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S]
          Length = 280

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 65/262 (24%), Gaps = 11/262 (4%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           T    V    +     S  V  +                    +G  +   Q        
Sbjct: 19  TTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRTQGISQQFTQGTIETTDK 78

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK---------LCQGISE 336
             +             S  D I         +     + D                  + 
Sbjct: 79  TLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTGARLQVIPLDPTTGAPTV 138

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           T  + P   ++     +              ++    +   Y D          +A  N+
Sbjct: 139 TGTLTPASLTDLKIPTNWPDGGTGNQLTSVGVSEEGKITGVYADGSTVYLGATAIAAFNS 198

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L +       W   N S +  L   +  +F  I         V++ EEL  LI  ++
Sbjct: 199 QEGLRQSGDAH--WTATNASGAPMLGTGNSGLFGSIRSGALERSNVDITEELVNLISAQR 256

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
           ++  ++K I   + +  T++  
Sbjct: 257 NFQANSKAIEAANTLSTTIVNM 278



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/146 (8%), Positives = 35/146 (23%), Gaps = 15/146 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRS 57
            F  + +    A    ++   N+ N ++  + +   +           +   V     R+
Sbjct: 2   SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              ++      +      +      + F  +K         +              + Y 
Sbjct: 62  QGISQQFTQGTIETTDKTLDLAITGEGFFTVK-----RSADDQIGYTRNGAFSVEEDRYV 116

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTS 141
            + +   L    +D          T 
Sbjct: 117 VDTTGARLQVIPLDPTTGAPTVTGTL 142


>gi|157738165|ref|YP_001490849.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018]
 gi|157700019|gb|ABV68179.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018]
          Length = 723

 Score = 74.7 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 104/396 (26%), Gaps = 21/396 (5%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   L   + N + D L       A   + +      +++ +    + +I   +
Sbjct: 333 NSGSGGMVAYLAKNTSNPTLDTLDPNGTYEASTEISDMLQGIIQIKSLIPGTEFKITE-V 391

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN---NNDM 217
           S                              D RD L + ++         ++   +   
Sbjct: 392 SETTTGTDTTVKGTYQSTATAVMGTGKAALEDARDALSRLVTGNQQSVYTTQDLYGDATA 451

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVT----------SESNPIFIDGVVVSSNQGSAV 267
              T +         +D+ ++                  +    + +D +V   N  +  
Sbjct: 452 ATSTREYKFSITIYDKDLGYDIPVPNDGNVPPNAVPIVINAGTGVTLDDIVTEINNQTTA 511

Query: 268 PKGKIKALLQIRDSV---VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
              ++   +  ++     V    +   ++      ++++         +   + +     
Sbjct: 512 SGPQLGDYITAKNVNGYLVIETNDGNYDVEFDAALTYTDPTHPTTPVTDDTLIEVNPDYS 571

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                  + +  T  V+     +   LR          +   ++     LI         
Sbjct: 572 GRKGAGAEFMEITTRVDQTSTQSSLQLRLDKLGISDSKFGSFSVDETG-LITITEGGVQY 630

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A    N  LL    N   +     S        +      +          +L
Sbjct: 631 AVGQVSIARFTNNQGLLAVGNN--NFQATQESGKAIYSTNNNNTAG-MQGKTLELSEADL 687

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E L  L+  ++++  + K I   D+ML TL+   +
Sbjct: 688 SESLVNLMVFQRAFEANAKSITTADEMLTTLINLKR 723



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/439 (7%), Positives = 94/439 (21%), Gaps = 14/439 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   + +    +   N+ N +   Y               +          
Sbjct: 1   MIGALWTGVSGLASQTTAIDNESNNVANVNTVGYKASRISFADQIYQNQIGKGSYVQDAE 60

Query: 62  --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  +               F  +            +       LR       +   
Sbjct: 61  KLFTQGSMKVTGVDYDVALQGDGFFTVINK--NTLGTAETFYTRAGNLRMGDSGTLQTAD 118

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +    + + +E   +  ++     +  +   K I+  I     ++  +      +  
Sbjct: 119 GYEVQGWAMSSIDE-KNDVISTNSNATRFTSAFTKNIDSAIIKHNDYIETIAAKTTNVDE 177

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGIS-TIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            T S   A      +     K S++  I       +N +  Y  D     +     ++  
Sbjct: 178 TTKSDSTAVFSGAGQ---KTKASKLKDIELATENYSNLLTKYQEDPDASSKGSISQVSQV 234

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
              +    +       D + V  N  +      +    +   + +    +  +     L+
Sbjct: 235 NFRTGVPPTSIIGKEGDSIKVVINGNTYTQPFVVTKSTETYRTDIWNSLDATERTLYGLV 294

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                   I+G       + IA   K                N       ++L    S  
Sbjct: 295 D----PATISGLPAANQEVEIAKYDKIAGKIETYKAMADKISNSGSGGMVAYLAKNTSNP 350

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +          I+       +     P                        +S +
Sbjct: 351 TLDTLDPNGTYEASTEISDMLQGIIQIKSLIPGTEFKITEVSETTTGTDTTVKGTYQSTA 410

Query: 419 HDLHMKSQVVFNHISESYS 437
             +    +       ++ S
Sbjct: 411 TAVMGTGKAALEDARDALS 429


>gi|311105937|ref|YP_003978790.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans
           A8]
 gi|310760626|gb|ADP16075.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans
           A8]
          Length = 261

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +   ++   ++    L       G   +        N       +A       L     N
Sbjct: 132 SGYVIQPPMNIPDNALSISIGNDGIVSVTQPGAAGINVQIGQLQIATFINPTGLQSIGEN 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +LE + S   +L          I + Y  T  VN+ EEL  +I  +++Y +++K + 
Sbjct: 192 L--YLETDASGPANLLQPGVDGAGSIMQKYVETSNVNVAEELVNMITTQRAYEMNSKAVK 249

Query: 467 FTDKMLQTLLEG 478
            +D+ML  L + 
Sbjct: 250 TSDEMLARLTQL 261



 Score = 57.0 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 55/246 (22%), Gaps = 35/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R   +                    
Sbjct: 1   MMRSLWIAKTGLEGQQTSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        V      +       L+   S +      + F  ++           
Sbjct: 61  QLPSGLQLGTGARVAATERIH---TAGNLNNTGSEMDIAINGRGFLQIE------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA--REVQKIRADADKEI 156
                   L+         +S  ++   +      +  +          Q   A  + +I
Sbjct: 112 QAYTRDGALQRDQNGQLTTVSGYVIQPPMNIPDNALSISIGNDGIVSVTQPGAAGINVQI 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                      + L  + + +  +T +   A+      D     + + +  S +      
Sbjct: 172 GQLQIATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAGSIMQKYVETSNVNVAEEL 231

Query: 217 MVVYTS 222
           + + T+
Sbjct: 232 VNMITT 237


>gi|189426330|ref|YP_001953507.1| flagellar basal body rod protein FlgG [Geobacter lovleyi SZ]
 gi|189422589|gb|ACD96987.1| flagellar basal-body rod protein FlgG [Geobacter lovleyi SZ]
          Length = 262

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 63/252 (25%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +  N   + +      +                 V      +    +  V   F  
Sbjct: 11  GMNTQTQNINVIANNLANVNTTGFKKSRADFQDLMYQTVQNPGSPSTNAAQIPVGIQFGM 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                A     +  +     G  +          I+  D       +    ++   R   
Sbjct: 71  GSKLAAVSKQFTPGDFSNTGGQLDMAIEGDGFFQIQMPDGSTAYSRAGAFKMDSNGRVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                          + K   G    ++      +       +   N        +    
Sbjct: 131 PEGYPMLPEIVIPNNSTKITIGTDGTVSAVQSGQSTASTVGNIQIANFTNPAGLSSMGKN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + + + S +       Q     I++ +     V++  E+  +I  +++Y  ++K I  +
Sbjct: 191 FYQQTDASGNATTGTPGQTGLGTITQGFLEMSNVDVATEMVNMIIGQRAYEANSKAITTS 250

Query: 469 DKMLQTLLEGVK 480
           D+MLQ      +
Sbjct: 251 DEMLQLANNLKR 262



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/185 (5%), Positives = 30/185 (16%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++     A +  N  +Q    I  N+ N +   + +                        
Sbjct: 1   MMRSLWTAASGMNTQTQNINVIANNLANVNTTGFKKSRADFQDLMYQTVQNPGSPSTNAA 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          + +K             +        F  ++          ++  
Sbjct: 61  QIPVGIQFGMGSKLAAVSKQFTPGDFSNTGGQLDMAIEGDGFFQIQ------MPDGSTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +              +   ++           T           +       I 
Sbjct: 115 SRAGAFKMDSNGRVVTPEGYPMLPEIVIPNNSTKITIGTDGTVSAVQSGQSTASTVGNIQ 174

Query: 162 NLRRF 166
                
Sbjct: 175 IANFT 179


>gi|315453484|ref|YP_004073754.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179]
 gi|315132536|emb|CBY83164.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179]
          Length = 262

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 68/261 (26%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                TT        I+    N   V +               Q             +  
Sbjct: 4   SLYSATTGMLGQQTHIDTTSNNIANVNTVGFKKQRADFNDLFYQALQYAGTSTSDTTKSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           + +      +   + ++      ++     +       F    + D      +  +  I 
Sbjct: 64  NGIEVGLGVRTSSVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNFKID 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 +   +L        +    +         +     S +       +A       
Sbjct: 124 DQGNMVTTEGYLLIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLANFINPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N +     + S    +   +   +  + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHALGDNLLAV--TSASGPAIVGNPNGDGYGQLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKTIQTADNMLQTVNSLKR 262



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/183 (6%), Positives = 36/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A            +   NI N +   + ++                       
Sbjct: 1   MLRSLYSATTGMLGQQTHIDTTSNNIANVNTVGFKKQRADFNDLFYQALQYAGTSTSDTT 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V      +               + +      + F  ++          ++  
Sbjct: 61  KSPNGIEVGLGVRTSSVTKMFSQGSPKETENNLDIAITGKGFFQIQ------MPDGSTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   +         +L   +    +    +              +   +  +I+
Sbjct: 115 TRAGNFKIDDQGNMVTTEGYLLIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQIT 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|325982369|ref|YP_004294771.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212]
 gi|325531888|gb|ADZ26609.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212]
          Length = 260

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 61/187 (32%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
               +      +      +       F    + D      +  +  + +N Q  ++  ++
Sbjct: 76  ATESIFTQGIIQPTDNPRDVAIRGLGFFQVLMPDGTTAYTRDGAFQLDLNGQLVTSSGYM 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V       V               +         +A       L +   N   ++
Sbjct: 136 VQPAIVVPPNTQTVTVGRDGTVSATVPGSNVPIQLGNIQLASFINPSGLQKMGENL--YM 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + + +         + + +  T  V++ EEL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ETASSGTPNQNAPGTNGLGILDQGFVETSNVSVVEELVNMIQTQRAYEMNSKSIETSDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQKLAQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/261 (6%), Positives = 54/261 (20%), Gaps = 40/261 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++        +   I  N+ N +   + R   +                    
Sbjct: 1   MIRSLWISKTGLEAQQTKLDVIANNLANVNTNGFKRSRAVFEDLMYQTLRQPGAQSSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V   S        ++    +          F  +            
Sbjct: 61  QLPSGLQLGTGVKPVATESI---FTQGIIQPTDNPRDVAIRGLGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155
           +        +  L       S  ++   ++              T +  V          
Sbjct: 112 TAYTRDGAFQLDLNGQLVTSSGYMVQPAIVVPPNTQTVTVGRDGTVSATVPGSNVPIQLG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ----RDVLLQKISEIIGISTIV 211
                S +     +    N  ++  ++   + +          D    + S +  +  +V
Sbjct: 172 NIQLASFINPSGLQKMGENLYMETASSGTPNQNAPGTNGLGILDQGFVETSNVSVVEELV 231

Query: 212 RNNNDMVVYTSDGTTLFETVP 232
                   Y  +  ++  +  
Sbjct: 232 NMIQTQRAYEMNSKSIETSDQ 252


>gi|254458078|ref|ZP_05071505.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium
           GD 1]
 gi|207085471|gb|EDZ62756.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium
           GD 1]
          Length = 262

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 57/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  +  +  N    ++  + 
Sbjct: 76  AINKIFSEGSLKQTDNQLDVAITGRGFFKLELPDGTEVYSRNGAFKVDDNGSMVNSDGYK 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V      ++         +     +         +        L     N   +L
Sbjct: 136 LVPEIVIPPDATDISIGTDGTVTVVQPGQTQATQIGQITLTNFINPAGLHSRGDNL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E + S               + + +     V L  EL+ LI  +++Y+ ++K+I  +D+M
Sbjct: 194 ETDSSGQPVEGTPGVDGLGVLRQGFVELSNVELVVELTDLITGQRAYDSNSKVITTSDEM 253

Query: 472 LQTLLEGVK 480
           LQT     +
Sbjct: 254 LQTTNNLKR 262



 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 52/212 (24%), Gaps = 29/212 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   + +     +                  
Sbjct: 1   MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFSDLMYKVMSYAGTATSDVT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V         NK   +  L    + +      + F  L+              
Sbjct: 61  KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNQLDVAITGRGFFKLE------LPDGTEVY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +        N     L   ++   +A ++    + +   VQ  +  A +  ++ 
Sbjct: 115 SRNGAFKVDDNGSMVNSDGYKLVPEIVIPPDATDISIGTDGTVTVVQPGQTQATQIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
           ++N        +  ++      +S        
Sbjct: 175 LTNFINPAGLHSRGDNLYLETDSSGQPVEGTP 206


>gi|170756722|ref|YP_001782271.1| flagellar hook protein flgE [Clostridium botulinum B1 str. Okra]
 gi|169121934|gb|ACA45770.1| flagellar hook protein flgE [Clostridium botulinum B1 str. Okra]
          Length = 344

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/329 (7%), Positives = 76/329 (23%), Gaps = 10/329 (3%)

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +   I+N      +   +                  +      +++   + ++ I     
Sbjct: 22  VGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLGGTNPRQVGLGVQVAGIYTKFT 81

Query: 216 DMVVYTSD---GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
              + T+       +       +    + S T     +   +    +     +       
Sbjct: 82  TGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITESTGDVQAGSIDGKNSTMDISFTR 141

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN-SENVPGLFIADGIKDLDNKLC 331
                + D    +  +    M   +          A +    +  +          +   
Sbjct: 142 DGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLTYAADGKATLAFVDADSKDLKAADDSK 201

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
           + I   I            ++         L           L      SF      + +
Sbjct: 202 KLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNGKSAALGQVAMASFKNEGGLEKM 261

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
                  +                 +      ++   +  +         V+L EE + +
Sbjct: 262 GKNLYKNSANSGEAIIRTPRGTAEEN------RNDKGYGDMLNGMIEMSNVDLAEEFTEM 315

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I   +++    K+I   D++LQ L+   +
Sbjct: 316 IVANRAFQACGKMITTGDEILQELVNLKR 344



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/294 (7%), Positives = 60/294 (20%), Gaps = 15/294 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   +  NI NA+   +  +                       
Sbjct: 1   MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                               +             N              +    + +  I
Sbjct: 61  GTNPRQVGLGVQVAGI----YTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSII 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
              T    A  +    +T             ++    + +    L+              
Sbjct: 117 TESTGDVQAGSIDGKNSTMDISFT-------RDGSFTLDDEGNLLTSDGFRIMGYAMTDG 169

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +        D +  L    ++   +     +   + +   D   +     R  +F    S
Sbjct: 170 TGTSLTYAADGKATLAFVDADSKDLKAADDSKKLIPLRIPDEIDVDGKKVRVQSF----S 225

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
                      ++G   +  Q +         L ++  ++     N  + + R 
Sbjct: 226 IDKDGLLVASLVNGKSAALGQVAMASFKNEGGLEKMGKNLYKNSANSGEAIIRT 279


>gi|33592481|ref|NP_880125.1| flagellar basal body rod protein FlgG [Bordetella pertussis Tohama
           I]
 gi|33572127|emb|CAE41669.1| flagellar basal-body rod protein FlgG [Bordetella pertussis Tohama
           I]
 gi|332381898|gb|AEE66745.1| flagellar basal body rod protein FlgG [Bordetella pertussis CS]
          Length = 261

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 5/184 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354
           + S    +   G  +          ++  D         ++ V+       +    ++  
Sbjct: 80  VFSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPP 139

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +V    L       G   +        N       VA       L     N   +LE +
Sbjct: 140 INVPDNALSLTIGKDGTVSVTQPGAAGTNVQIGQLQVATFINPTGLQSVGENL--YLETD 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   +L          I + Y  T  VN+ EEL  +I  +++Y +++K +  +D+ML  
Sbjct: 198 SSGPANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLAR 257

Query: 475 LLEG 478
           L + 
Sbjct: 258 LTQL 261



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 57/246 (23%), Gaps = 35/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     +     +                    
Sbjct: 1   MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLMYQTLRQPGAQVGDAN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +          ++     +      + F  ++           
Sbjct: 61  QLPSGLQLGMGVQVAATQRV---FSQGNMNNTGGEMDIAIQGRGFLQVE------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   L+             ++     V DNA  +    + +    Q   A  + +I
Sbjct: 112 QAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPGAAGTNVQI 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                      + L  V + +  +T S   A+      D   Q + + +  S +      
Sbjct: 172 GQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVETSNVNVAEEL 231

Query: 217 MVVYTS 222
           + + T+
Sbjct: 232 VNMITT 237


>gi|268317781|ref|YP_003291500.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM
           4252]
 gi|262335315|gb|ACY49112.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM
           4252]
          Length = 262

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A       L     N         S    L    +  F  + + +     V++ +E+  
Sbjct: 175 LARFPNPAGLRAIGGNLYEQ--TEASGFPILGAPGEEGFGTVKQGFLEAANVDVVQEMVN 232

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI  +++Y I++K++  T++MLQT  +  +
Sbjct: 233 LITAQRAYEINSKMVTTTEEMLQTASQMKR 262



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 26/146 (17%), Gaps = 33/146 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A    N       +I  N+ NA+   +     +                    
Sbjct: 1   MLRALRTAALGMNAQQTNVDNIAHNLANANTTGFKNARVVFQDLLYQTVQTPGQEEAEGL 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV             L    +A+        F  +            
Sbjct: 61  TPPASLQLGSGVAVVATVR---QFTQGSLVETGNALDLAINGDGFFQI------RRPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILG 124
                      + +      +   L 
Sbjct: 112 IVYTRDGTFTLNADGTFVTQTGLPLE 137


>gi|30248324|ref|NP_840394.1| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC
           19718]
 gi|30138210|emb|CAD84218.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718]
          Length = 260

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
               + +    ++     +       F    + D      +  +     + Q  +   F 
Sbjct: 76  ATENIFLQGNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAFQSDQDGQMVTASGFP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       N+         +     +         +        L  +  N   +L
Sbjct: 136 LQPSITIPPNTLNITIGRDGTVSVLTPGSALPVPVGNIQLTTFINPAGLQRFGENL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S   +  +        +++ +  T  VN+ EEL  +I+ +++Y I+++ I  +D+M
Sbjct: 194 ETMSSGVPNPGIPGTNGIGLLNQGFVETSNVNVVEELVEMIQTQRAYEINSRSISTSDQM 253

Query: 472 LQTLLEG 478
           L  L + 
Sbjct: 254 LARLTQL 260



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 29/153 (18%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    +   I  N+ N     + R   +                    
Sbjct: 1   MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    +        + F  +               
Sbjct: 61  RLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGEGFFQIL------LPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                 +   +      S   L  ++      +
Sbjct: 115 TRDGAFQSDQDGQMVTASGFPLQPSITIPPNTL 147


>gi|330809244|ref|YP_004353706.1| flagellar hook protein FlgE [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377352|gb|AEA68702.1| putative flagellar hook protein FlgE [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 392

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/387 (12%), Positives = 106/387 (27%), Gaps = 4/387 (1%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           +  +    +   L +   + S   +    G      A       +  +            
Sbjct: 7   NGMSGLFSFAKGLDNVSNNVSNMNTPGYRGSDTFYRAVNGQDGQSFGSGIAGTQVRIKPG 66

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           E     +N    ++         +    S   A  F   +D  L        I+ I    
Sbjct: 67  ENRQTGNNTNVAINGAGYFVLRDEQGALSYTRAGQFEVDKDGYLVDTISQQRIAGIDSAG 126

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN-PIFIDGVVVSSNQGSAVPKGKIK 273
           N   +      TL       +      + T T+E+   I    V  S+     +      
Sbjct: 127 NLRDINIQGQRTLPPQATTRVEMVGALARTGTTEATHQINAIQVFDSTGASHTLSVKFEP 186

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                    V +      ++    I    +  P AG +     L +   ++ +       
Sbjct: 187 KTTPANSWSVTVSDASGAQLQTGTIAFGVDGSPSAGFNTLSVPLTVNGQVQSIVLDFGTP 246

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            S  +        + +        S     N         L   Y +   ++     +A 
Sbjct: 247 GSFNLASQVASGPSHTLGARVVDGSAVAGLNSFAFDEKGILKFTYANGEKRDGSQLALAD 306

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L+  A +         S   +     +  F  I   Y     V+L +E   ++ 
Sbjct: 307 FADESALIAGANSLYH---TPSSMKAEFGRAGEKQFGRIQGGYLELSNVDLAQEFGDILI 363

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +++ Y  S++++  +++ML+ L  G +
Sbjct: 364 IQRGYQASSRVMTVSNEMLEQLYNGTR 390


>gi|302670727|ref|YP_003830687.1| flagellar hook protein FlgE1 [Butyrivibrio proteoclasticus B316]
 gi|302395200|gb|ADL34105.1| flagellar hook protein FlgE1 [Butyrivibrio proteoclasticus B316]
          Length = 1049

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 63/240 (26%), Gaps = 11/240 (4%)

Query: 241  NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            ++   +S    + ++    S         G I A+    D              +     
Sbjct: 821  DNTPGSSNYGAMTLNVGKHSITLEFKPENGVIGAV----DGNTDAAMTVDLHFDQTEGYG 876

Query: 301  FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                   A  +         +   D         + +  +        S      +    
Sbjct: 877  LEPFGFQASATNADEQDRAGNITIDFSTVTNYNTNGSSTIKAVKGDKKSL----NTGRAV 932

Query: 361  FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
               N  +++    +   Y +   K       A       L +   N         S    
Sbjct: 933  GEMNGVSISTDGQIYATYSNGQTKLLGQIASAEFANASGLSKEGDNLYA--STLNSGEAT 990

Query: 421  LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +   +     +++        V+L  + + +I  ++ +  ++++I  +D +L+ L    +
Sbjct: 991  VQDITTDG-GYMNTGVLEMSNVDLSSQFTEMITTQRGFQANSRIITVSDTLLEELTNLKR 1049



 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/454 (7%), Positives = 94/454 (20%), Gaps = 22/454 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------E 48
           ++               +   I  NI N +  ++  +    +                  
Sbjct: 1   MMRSLYSGVAGLKTHQTKMDVIGNNIANVNTTSFKSQSITFSDLMYQTTQTASGATETKG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V         K+           A              E     ++ N +         
Sbjct: 61  GVNARQIGLGAKSGAINTAITSQGATQTTNNPFDIMITGESFFIVNNGNENLYTRDGSFY 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
                     S   L +      +        S  E+  ++  + +      ++    L 
Sbjct: 121 VDGAGNLAMQSNGYLVQGWKAVEDRDTGEITISKGELTGLQIMSPENSTYSPASTTSSLF 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN--NDMVVYTSDGTT 226
              + +      +                L      +  +            +  S+G +
Sbjct: 181 SGNIDDFDSNLTSDDGKTITLEFYDNKGYLYTGKFTLKDTETEHLFALTLTDIIDSNGKS 240

Query: 227 LFETVP-----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           + +          I      +    S++  +      V S   + +   K    ++  + 
Sbjct: 241 INDNPEGIDRLSLITLGDQTNTKARSQTTKVQQGYTPVQSVDSTKITINKDGGDIKYDNV 300

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                   L   A     + +     A +  +     +       + +     +  I V 
Sbjct: 301 AKHGNLVDLMSSATTNAKTANLLQ-DAYDLSDDKIKELYGETLFKEAEYDIATNGDITVT 359

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                  S   D  +  +           + +  +        +      A   T   L 
Sbjct: 360 FAKPDLSSLPYDANTFQQVDFGTKNTDEYFTNAASQKAYKVPSSQGGKKDASDLTTDFLK 419

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +    +  +   + S               I ++
Sbjct: 420 DVFNITTDYTATDASGKALYSYTYGSGKLSIYKN 453


>gi|4378858|gb|AAD19726.1| flagellar hook protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 412

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/473 (7%), Positives = 97/473 (20%), Gaps = 64/473 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F  +    N A    +    NI N+ +  + +  T       +  + +           
Sbjct: 2   AFYTSLTGLNAAQTDLSVPSNNIANSGSYGFKKTTTDFGELVADSPLAS----------- 50

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                                          N      +        S S   +   L  
Sbjct: 51  -----------------------------GQNIGQGTRLRATIQDFTSGSMKTTNRALDM 81

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            V  +   +V++    +  +   R  +    +                         +  
Sbjct: 82  MVNGDGFFLVKSPRPPSGTISLTRDGSFLTDKNNNVVTSDGHYLQVYATTNSGNIYNNGE 141

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                  +    L   S    +S                 T       +      +    
Sbjct: 142 TGSATGGRVVKNLTLPSYEDQVSI-------------SSATGETVQVGNNLARTGDVTVT 188

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  + +  +  +                +L I    +    N +   A       +   
Sbjct: 189 GTNGDTVIHNAKITLGGATINSDGSTTGGVLTITGGTIGAGVNSVANTATYTSTKAAAPI 248

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             +     + G+     +    +                  +        ++S      V
Sbjct: 249 TTSAGVSTLTGVTDLGTLSYNGDTYTGSPITAFNPQTSTDESGDTSSALSNISVGTDGKV 308

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                  +       +       + +                  W     S S +     
Sbjct: 309 TATFANGNQYILGAVALGDVNNRNGLHSTGNA-----------NWTVTGTSGSLNYREAD 357

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +         ++L +EL  LI  ++++  ++K I   ++M+  ++  
Sbjct: 358 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVMNI 410


>gi|32490792|ref|NP_871046.1| flagellar basal body rod protein FlgG [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165998|dbj|BAC24189.1| flgG [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 260

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 2/167 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F    + D  N   +  S  +    Q  ++  +             N+   
Sbjct: 93  TDIAIQGPGFFQVLMSDGTNMYTRNGSFQLDQYGQLVTSNGYPVQPSITIPNGSSNLTIS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                 +     +  +      ++    +  L     +   + E   S S   +      
Sbjct: 153 KDGIVSVMVPGQTQPQEVGQLTISTFINSSGLESAGESL--YKETQSSGSPADNTPGMNG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
              + + +     VN+ EEL  +I+ +++Y +++K+I  +D+MLQ L
Sbjct: 211 AGSLKQKFVENSNVNIAEELITMIQTQRAYELNSKVISTSDQMLQRL 257



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 36/158 (22%), Gaps = 5/158 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A+            I  NI N     + R+  +           T R      
Sbjct: 1   MIRSLAIAKTGLEAQQINMDVISNNISNVSTNGFKRQKAIFEDLLY----QTIRQPGAKS 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEAL-KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
            ++ +      +G      +   +  +    +                 L S   N+   
Sbjct: 57  SEQTILPSGLQLGTGVNSSATIKIHLQGGLTNTGNETDIAIQGPGFFQVLMSDGTNMYTR 116

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                +    + V  N       +      ++  I  +
Sbjct: 117 NGSFQLDQYGQLVTSNGYPVQPSITIPNGSSNLTISKD 154


>gi|161503733|ref|YP_001570845.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865080|gb|ABX21703.1| hypothetical protein SARI_01818 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 260

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 N+         +     +         +     +  L     N   ++E   S 
Sbjct: 142 IPANALNITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 46/205 (22%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   +      +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALNITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  I+ +++   +
Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202


>gi|15616948|ref|NP_240161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681701|ref|YP_002468087.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682256|ref|YP_002468640.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471397|ref|ZP_05635396.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11386809|sp|P57424|FLGG_BUCAI RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|25298916|pir||G84969 flagellar basal-body rod protein flgG [imported] - Buchnera sp.
           (strain APS)
 gi|10039013|dbj|BAB13047.1| flagellar basal-body rod protein flgG [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621989|gb|ACL30145.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624544|gb|ACL30699.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086079|gb|ADP66161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086651|gb|ADP66732.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087237|gb|ADP67317.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087756|gb|ADP67835.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 260

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 2/166 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D +    +  S  +  N Q  +N  F             N+    
Sbjct: 94  DVAINGSGFFQVQLPDGNIAYTRDGSFQLDQNGQLVTNSGFPIIPEINIPSNSTNINIAR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +     N  L     N   + E   S S           
Sbjct: 154 DGVISVVVQGQTQPVLLGQLNLINFVNNSGLESLGENL--YQETQASGSPIETTPGLNGT 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L
Sbjct: 212 GVLYQGYVETSNVNVAEELVNMIQTQRAYEINSKSISTSDQMLQKL 257



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/186 (5%), Positives = 36/186 (19%), Gaps = 33/186 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +        I  N+ N     + R   +                    
Sbjct: 1   MIPSLWISKTGLDAQQINMNIISNNLANVSTNGFKRSRAVFEDLMYQTIREAGTNSSLET 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +       L    ++         F  ++          N
Sbjct: 61  TLPSGLQLGTGVRPVSTERIH---TQGNLSKTDASKDVAINGSGFFQVQ------LPDGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    +          S   +   +   +     N          ++      +  
Sbjct: 112 IAYTRDGSFQLDQNGQLVTNSGFPIIPEINIPSNSTNINIARDGVISVVVQGQTQPVLLG 171

Query: 159 EISNLR 164
           +++ + 
Sbjct: 172 QLNLIN 177


>gi|15596279|ref|NP_249773.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAO1]
 gi|107100527|ref|ZP_01364445.1| hypothetical protein PaerPA_01001552 [Pseudomonas aeruginosa PACS2]
 gi|116049011|ref|YP_792187.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984786|ref|YP_001349648.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PA7]
 gi|218892954|ref|YP_002441823.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa
           LESB58]
 gi|254234218|ref|ZP_04927541.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa
           C3719]
 gi|254239440|ref|ZP_04932762.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192]
 gi|296390554|ref|ZP_06880029.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAb1]
 gi|313106037|ref|ZP_07792296.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa
           39016]
 gi|9946998|gb|AAG04471.1|AE004539_13 flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PAO1]
 gi|115584232|gb|ABJ10247.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166149|gb|EAZ51660.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa
           C3719]
 gi|126192818|gb|EAZ56881.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192]
 gi|150959944|gb|ABR81969.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PA7]
 gi|218773182|emb|CAW28994.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa
           LESB58]
 gi|310878798|gb|EFQ37392.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa
           39016]
          Length = 261

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D      +  S  +  + Q  ++  F  +   V         
Sbjct: 91  QPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNSDGQIVTSNGFALEPAIVVPNETQTFT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +    ++  +       A       L     N   +LE   S +  +     
Sbjct: 151 VGQDGTVSVTTTGNAQPQVIGNIQTADFINPAGLQAIGNNL--FLETGSSGAPQVGTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                ++++      VN+ EEL  +I  +++Y +++K+I   D+ML
Sbjct: 209 NGLGTVAQNTLENSNVNVVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/245 (7%), Positives = 47/245 (19%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L+    ++   +       +I  N+ N     + R                        
Sbjct: 1   MLSALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          L      +      + F  +            
Sbjct: 61  ELPSGLQLGTGVRVVGTQKI---FTPGSLQTTEQPLDMAVNGRGFFQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                      + +      +   L   ++   E                  +A  ++  
Sbjct: 112 VSYTRDGSFHLNSDGQIVTSNGFALEPAIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIG 171

Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            I             + N+      +S            +     + +   +  V     
Sbjct: 172 NIQTADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLGTVAQNTLENSNVNVVEELV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMITT 236


>gi|269965650|ref|ZP_06179763.1| putative flagellar hook-associated protein [Vibrio alginolyticus
          40B]
 gi|269829718|gb|EEZ83954.1| putative flagellar hook-associated protein [Vibrio alginolyticus
          40B]
          Length = 107

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 21/92 (22%), Gaps = 10/92 (10%)

Query: 8  NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRS 57
          N A +             +N+ N +   Y R+  +                 V V + R 
Sbjct: 5  NIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVTSIRR 64

Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
                 K   + +S               E 
Sbjct: 65 VTDQFLIKQTWSTNSMAAYASGYTRNAESAEN 96


>gi|187935288|ref|YP_001885050.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund
           17B]
 gi|187723441|gb|ACD24662.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund
           17B]
          Length = 364

 Score = 74.3 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
               +            L      S     +    A   D               +P   
Sbjct: 220 PDSVMKPKINEDGTEGDLEPVPVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGL 279

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            +    LLE + NS G +    S        S+  F    +       V+L E+ + +I 
Sbjct: 280 TSVGGNLLEASSNS-GPVIVKTSTGTTDGDNSKG-FGDFIQGALEASNVDLTEQFTDMIT 337

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +++  S+K+I   D++LQT+   ++
Sbjct: 338 ATRAFQASSKMISTADEILQTITGLMR 364



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 48/228 (21%), Gaps = 13/228 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +   +   +   I  NI N     +       T                  
Sbjct: 1   MLRSMYSGISGMKSNQVKLDVIGNNIANVSTTGFKSSSARFTDMLY------------QN 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121
                   S+  G         +    ++      N+ +   S  +    + Y    +  
Sbjct: 49  VSSATAPTSTKGGTNAKQVGLGSQLASINKVMGQGNALSTGRSLDVCIDGDGYLIVGTGP 108

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                             +       I    D  + L+            V+   +   T
Sbjct: 109 ASYGGDDGTKGGTSIVNGSINGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGT 168

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +     +  D+   ++    E   +    +      V    G TL  
Sbjct: 169 NTSIKEGEVKDKDGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQP 216


>gi|85710164|ref|ZP_01041229.1| flagellar hook protein [Erythrobacter sp. NAP1]
 gi|85688874|gb|EAQ28878.1| flagellar hook protein [Erythrobacter sp. NAP1]
          Length = 279

 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 2/169 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                    D I+          +  +  +    ++ +    G   ++ F          
Sbjct: 113 SGTLQDAFGDRIQGFPVDGAGTPTSNVPADITIPTSRTVTDPGTGATQDFQLTSVGFDAR 172

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             L   Y D F++      +A    N  L    +    W     S   +        F  
Sbjct: 173 GVLTATYSDGFSEPVAMLSLATFPANGGLRSIGQ--TKWEATAESGDPEFGQPGVGNFGA 230

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I+        V+L EE+  L+  ++++  + + I     + QT+L   +
Sbjct: 231 IATGTLERSNVDLAEEMVSLLTAQRNFQANARAIDTATAITQTVLNLQR 279



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 10/164 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55
            F  + +   NA      I  NI NA+   + +     +    +              T 
Sbjct: 2   SFFTSLSGMRNAETDLRVISNNIANAETAGFKKSSAQFSDLVASGGSTDPRTTPGIGATV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              +++     L     A+        F      +S D ++  +    I       +++ 
Sbjct: 62  SRISQDFGLGQLEQTGRALDIAINGGGFITSANAISGDINFTRNGNLEIVASGTLQDAFG 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
             +    +       +         ++R V      A ++ +L 
Sbjct: 122 DRIQGFPVDGAGTPTSNVPADITIPTSRTVTDPGTGATQDFQLT 165


>gi|288574697|ref|ZP_06393054.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570438|gb|EFC91995.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 262

 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 75/261 (28%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
               G T       +++    N   V +               Q +  P   ++    + 
Sbjct: 4   SLWTGATGMVAQQTNLDVTSNNLANVNTVGYKKVRTNFADLLYQINREPGSPVEGGTTVP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             +      +++  +R+      E      N       +    + + D            
Sbjct: 64  TGIQVGLGARVNGTSRITTPGSYEVTDAPLNVAIEGNAYFQVVLPNGDIAYSANGEWQRD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            + Q  ++  +L +   V  +   ++   +     ++   D   +      +        
Sbjct: 124 GDGQIVTSDGYLLEPAIVIPEDGTDITISSTGQVYVSQPGDDEAQEIGQIELVRFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    RN   + E   S    +       F  + +       V + EE+  LI  +++Y 
Sbjct: 184 LRAIGRNL--FRETAASGDPQIGNPGDDGFPTLQQGILERSNVQVVEEMVNLIVAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D++L+      +
Sbjct: 242 ANSKTIQTADRLLEVANGLKR 262



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/216 (6%), Positives = 41/216 (18%), Gaps = 15/216 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------SPE 48
           ++                      N+ N +   Y +  T                     
Sbjct: 1   MIRSLWTGATGMVAQQTNLDVTSNNLANVNTVGYKKVRTNFADLLYQINREPGSPVEGGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
            V    Q      +          +        +              N         + 
Sbjct: 61  TVPTGIQVGLGARVNGTSRITTPGSYEVTDAPLNVAIEGNAYFQVVLPNGDIAYSANGEW 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +   +         +L   ++   +      +++ +       D + +   +I  +R   
Sbjct: 121 QRDGDGQIVTSDGYLLEPAIVIPEDGTDITISSTGQVYVSQPGDDEAQEIGQIELVRFVN 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                      F+  +        +  D     + +
Sbjct: 181 PAGLRAIGRNLFRETAASGDPQIGNPGDDGFPTLQQ 216


>gi|307293787|ref|ZP_07573631.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1]
 gi|306879938|gb|EFN11155.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1]
          Length = 280

 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 65/262 (24%), Gaps = 11/262 (4%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           T    V    +     S  V  +                    +G  +   Q        
Sbjct: 19  TTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRTQGISQQFTQGTIETTDK 78

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK---------LCQGISE 336
             +             S  D I         +     + D                  + 
Sbjct: 79  TLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTGARLQVVPLDPTTGVPTA 138

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           T  + P   ++     +              ++    +   Y D          +A  N+
Sbjct: 139 TGTLTPASLTDLKIPTNWPDGGTGNQLTSVGVSEEGKITGVYADGSTVYLGATAIAAFNS 198

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L +       W   N S +  L   +  +F  +         V++ EEL  LI  ++
Sbjct: 199 QEGLRQSGDAH--WTATNASGAPMLGTGNSGLFGSVRSGALERSNVDITEELVNLISAQR 256

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
           ++  ++K I   + +  T++  
Sbjct: 257 NFQANSKAIEAANTLSTTIVNM 278



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/146 (8%), Positives = 36/146 (24%), Gaps = 15/146 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVTQRS 57
            F  + +    A    ++   N+ N ++  + +   +           +   V     R+
Sbjct: 2   SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              ++      +      +      + F  +K         +              + Y 
Sbjct: 62  QGISQQFTQGTIETTDKTLDLAITGEGFFTVK-----RSADDQIGYTRNGAFSVEEDRYV 116

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTS 141
            + +   L    +D    V     T 
Sbjct: 117 VDTTGARLQVVPLDPTTGVPTATGTL 142


>gi|251780952|ref|ZP_04823872.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085267|gb|EES51157.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 364

 Score = 74.3 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
               +            L      S     +    A   D               +P   
Sbjct: 220 PDSVMKPKINEDGTEGDLEPVPVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGL 279

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            +    LLE + NS G +    S        S+  F    +       V+L E+ + +I 
Sbjct: 280 TSVGGNLLEASSNS-GPVIVKTSTGTTDGDNSKG-FGDFIQGALEASNVDLTEQFTDMIT 337

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +++  S+K+I   D++LQT+   ++
Sbjct: 338 ATRAFQASSKMISTADEILQTITGLMR 364



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 49/228 (21%), Gaps = 13/228 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N     +       T      T           
Sbjct: 1   MLRSMYSGISGMKANQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNTSSATA------ 54

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121
                   S+  G         A    ++      N+ +   S  +    + Y    +  
Sbjct: 55  ------PTSTKGGTNAKQVGLGAQLASINKVMGQGNALSTGRSLDVCVDGDGYLIVGTGP 108

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                             + +     I    D  + L+            V+   +   T
Sbjct: 109 ASYGGDDGTKGGTSIVNGSISGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGT 168

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +     +  D+   ++    E   +    +      V    G TL  
Sbjct: 169 NTSIKEGEVKDKDGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQP 216


>gi|330721006|gb|EGG99167.1| Flagellar basal-body rod protein FlgG [gamma proteobacterium
           IMCC2047]
          Length = 261

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 2/176 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                E      +       +    + D +    +     +  +    ++  F       
Sbjct: 82  TNGSLEVTDQPLDIAINGRGYFQVLLPDGETGYARDGQFQLNSDGVIVNSQGFELQPSIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 N+   +           S         +A       L     N   + E   S 
Sbjct: 142 VPANTLNITIGSDGVISATVAGSSTPTQIGDIQLAEFINPTGLQAIGGNL--YKETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             I +       VN+ EEL  +I  +++Y ++ K+I  +D+MLQ
Sbjct: 200 TPTTGTPGLSGRGTIEQGVLENSNVNIVEELVDMITTQRAYEMNTKVISTSDQMLQ 255



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 15/147 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           +LA    ++   +   Q  ASI  N+ N     Y R   +       V        +++ 
Sbjct: 1   MLASLWISKTGLSAQDQALASISNNLANVSTTGYKRERAVFQDLLYPVHTQPGAQSSQST 60

Query: 62  --------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                         +  + LH + S     + L      +           +      + 
Sbjct: 61  QLPSGLQTGTGVKTVATQKLHTNGSLEVTDQPLDIAINGRGYFQVLLPDGETGYARDGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEV 134
           + + +    N     L  ++   A  +
Sbjct: 121 QLNSDGVIVNSQGFELQPSITVPANTL 147


>gi|89092138|ref|ZP_01165093.1| flagellar basal-body rod protein FlgG [Oceanospirillum sp. MED92]
 gi|89083873|gb|EAR63090.1| flagellar basal-body rod protein FlgG [Oceanospirillum sp. MED92]
          Length = 261

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 54/176 (30%), Gaps = 2/176 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 E    A +       F+   + + D    +     +  + +  +   +  +   
Sbjct: 81  FGTGEIEITEEAFDVAINGRGFLQVTLPNGDTAYTRNGQLHLNADNELVTPEGYQINPAI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                + N          +    ++         +A       L    +N   + E   S
Sbjct: 141 TLPGEVVNFSISTDGVVEVVTAGNNTPTQIGQLQMADFVNPQGLQSLGQNL--YQETGAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +  +    +     + +       VN  +EL  +I  +++Y +++K+I   D+ML
Sbjct: 199 GAPIISNPGENGTGILVQGALEGSNVNSVQELVDMITTQRAYEMNSKVISTADEML 254



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/205 (8%), Positives = 48/205 (23%), Gaps = 28/205 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR------------------RDTMTT 44
           +    N A+            I  N+ N     + +                  +     
Sbjct: 1   MHGALNVAKTGMTAQDTNLKVISNNLANVSTVGFKKDAVVFEDLMYQIRRQPGAQTAEEA 60

Query: 45  ISPENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V    R+           +     A       + F  +           ++  
Sbjct: 61  QLPSGLQVGLGVRTVGTQKLFGTGEIEITEEAFDVAINGRGFLQV------TLPNGDTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +L  + ++              I    EVV    ++   V+ + A  +   ++   
Sbjct: 115 TRNGQLHLNADNELVTPEG-YQINPAITLPGEVVNFSISTDGVVEVVTAGNNTPTQIGQL 173

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +  F++   + +        +   
Sbjct: 174 QMADFVNPQGLQSLGQNLYQETGAS 198


>gi|294635612|ref|ZP_06714089.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC
           23685]
 gi|291091064|gb|EFE23625.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC
           23685]
          Length = 260

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNGQLVTASGFQVSPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      ++    +  L     N   + E + S 
Sbjct: 142 IPANATSMTIGRDGIVSVTVQGQAAAQQVGQLTLSTFINDAGLESVGENL--YQETDSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L +
Sbjct: 200 APTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 28/155 (18%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R+  +                    
Sbjct: 1   MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       Q F  +           +
Sbjct: 61  TLPSGLQLGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQV------TLPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                    +          S   +   +   A  
Sbjct: 112 QAYTRDGSFQVDQNGQLVTASGFQVSPAITIPANA 146


>gi|218678737|ref|ZP_03526634.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894]
          Length = 112

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           ++     +   Y +   K+    P+A + +   L   + N        +S          
Sbjct: 1   SIGTDGVVSVSYANGATKSLYQIPLATVASPDNLTLMSGNVYS--ANGQSGVTVTGFPQT 58

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                I      +  V+L  EL+ +I+ ++SY  ++K+      ++  L+   +
Sbjct: 59  NGLGSIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVNLKR 112


>gi|33601543|ref|NP_889103.1| flagellar basal body rod protein FlgG [Bordetella bronchiseptica
           RB50]
 gi|33575979|emb|CAE33058.1| flagellar basal-body rod protein [Bordetella bronchiseptica RB50]
          Length = 261

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 5/184 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354
           + S    +   G  +          ++  D         ++ V+       +    ++  
Sbjct: 80  VFSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPP 139

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +V    L       G   +        N       VA       L     N   +LE +
Sbjct: 140 INVPDNALSLTIGKDGTVSVTQPGAAGTNVQIGQLQVATFINPTGLQSVGENL--YLETD 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   +L          I + Y  T  VN+ EEL  +I  +++Y +++K +  +D+ML  
Sbjct: 198 SSGPANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLAR 257

Query: 475 LLEG 478
           L + 
Sbjct: 258 LTQL 261



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 58/246 (23%), Gaps = 35/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R   +                    
Sbjct: 1   MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKRGRAVFQDLMYQTLRQPGAQVGDAN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +          ++     +      + F  ++           
Sbjct: 61  QLPSGLQLGTGVQVAATQRV---FSQGNMNNTGGEMDIAIQGRGFLQVE------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   L+             ++     V DNA  +    + +    Q   A  + +I
Sbjct: 112 QAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPGAAGTNVQI 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                      + L  V + +  +T S   A+      D   Q + + +  S +      
Sbjct: 172 GQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVETSNVNVAEEL 231

Query: 217 MVVYTS 222
           + + T+
Sbjct: 232 VNMITT 237


>gi|293395585|ref|ZP_06639868.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582]
 gi|291421904|gb|EFE95150.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582]
          Length = 260

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       +    + D      +  S  I  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGYFQVMLPDGSQAYTRDGSFQIDQNGQLVTASGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     +  L     N   + E   S 
Sbjct: 142 IPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFINDSGLESVGENL--YQETESSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  +D+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTSDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +      
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGYFQVMLPDGSQAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +          S   +   +   A  +
Sbjct: 118 GSFQIDQNGQLVTASGFQVQPAITIPANAL 147


>gi|322380502|ref|ZP_08054691.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5]
 gi|321147069|gb|EFX41780.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5]
          Length = 262

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  +  I       +   +L
Sbjct: 76  SVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNFKIDDQGNMVTTEGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                   +    +         +     S +       +A       L     N +   
Sbjct: 136 LIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLANFINPAGLHALGDNLLAV- 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + S    +   +   +  + + +     V L EE++ LI  +++Y  ++K I   D M
Sbjct: 195 -TSASGPAIVGNANSDGYGQLRQGFLELSNVRLVEEMTDLITAQRAYEANSKTIQTADNM 253

Query: 472 LQTLLEGVK 480
           LQT+    +
Sbjct: 254 LQTVNSLKR 262



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/177 (6%), Positives = 33/177 (18%), Gaps = 15/177 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           +L     A            +   NI N +   + R+                 +     
Sbjct: 1   MLRSLYSATTGMLGQQTHIDTTSNNIANVNTVGFKRQRADFNDLFYQALQYAGTSTSDTT 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD---------HYNNSPTHYISKL 107
                +   +    +S           E    +  A              ++        
Sbjct: 61  RSPNGIEVGLGVRTASVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   +         +L   +    +    +              +   +  +I+   
Sbjct: 121 KIDDQGNMVTTEGYLLIPQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLAN 177


>gi|330502736|ref|YP_004379605.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01]
 gi|328917022|gb|AEB57853.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01]
          Length = 261

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +      +       F      D      +  S  +  + Q  ++  F  
Sbjct: 77  TQKIFTAGSLQTTEQPLDLAVNGRGFFQILQPDGTVSYTRDGSFHLNSDGQIVTSQGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V    +            +    ++  +      +A       L     N   +LE
Sbjct: 137 EPAIVLPAEVRTFTVGEDGTVSVTTAGNAQAQVIGNIQLADFVNPAGLEAIGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +            ++      V++ EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/245 (7%), Positives = 51/245 (20%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     ++   +       +I  N+ N     + R                        
Sbjct: 1   MLPALWVSKTGLSAQDMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQTSQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          L      +      + F  + +          
Sbjct: 61  ELPSGLQLGTGVRVVGTQKI---FTAGSLQTTEQPLDLAVNGRGFFQILQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE--EVVQNFNTSAREVQKIRADADKEI 156
                      + +          L   ++  AE        + +        A A    
Sbjct: 112 VSYTRDGSFHLNSDGQIVTSQGFALEPAIVLPAEVRTFTVGEDGTVSVTTAGNAQAQVIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            +++++         + N+      +S            +     + +   +  V     
Sbjct: 172 NIQLADFVNPAGLEAIGNNLFLETGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMITT 236


>gi|188588515|ref|YP_001920211.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498796|gb|ACD51932.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 364

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
               +            L      S     +    A   D               +P   
Sbjct: 220 PDSVMKPKINEDGTEGDLEPVPVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGL 279

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            +    LLE + NS G +    S        S+  F    +       V+L E+ + +I 
Sbjct: 280 TSVGGNLLEASSNS-GPVIVKTSTGTTDGDNSKG-FGDFIQGALEASNVDLTEQFTDMIT 337

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +++  S+K+I   D++LQT+   ++
Sbjct: 338 ATRAFQASSKMISTADEILQTITGLMR 364



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 49/228 (21%), Gaps = 13/228 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N     +       T      T           
Sbjct: 1   MLRSMYSGISGMKANQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNTSSATA------ 54

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121
                   S+  G         A    ++      N+ +   S  +    + Y    +  
Sbjct: 55  ------PTSTKGGTNAKQVGLGAQLASINKVMGQGNALSTGRSLDVCIDGDGYLIVGTGP 108

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                             + +     I    D  + L+            V+   +   T
Sbjct: 109 TSYGGDDGTKGGTSIVNGSISGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGT 168

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +     +  D+   ++    E   +    +      V    G TL  
Sbjct: 169 NTSIKEGEVKDKDGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQP 216


>gi|238788317|ref|ZP_04632111.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC
           33641]
 gi|238723563|gb|EEQ15209.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC
           33641]
          Length = 260

 Score = 73.9 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D  N   +  S  +  N Q  ++  F             ++    
Sbjct: 94  DIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQIQPAITIPANALSMTVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +  +      +     N  L     N   + E   S + +         
Sbjct: 154 DGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSGAPNDSTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/208 (7%), Positives = 44/208 (21%), Gaps = 24/208 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTSGGFQIQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHD 189
            +     E    N   +  ++   +   
Sbjct: 178 FINNSGLESVGENLYQETASSGAPNDST 205


>gi|293605005|ref|ZP_06687401.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii
           ATCC 43553]
 gi|292816610|gb|EFF75695.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii
           ATCC 43553]
          Length = 261

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 2/132 (1%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +   ++   +V    L       G   +        N       +A       L     N
Sbjct: 132 SGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQIATFINPTGLQSIGEN 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +LE + S   +L          I ++Y  T  VN+ EEL  +I  +++Y +++K + 
Sbjct: 192 L--YLETDASGPANLLQPGVDGAGSIMQNYVETSNVNVAEELVNMITTQRAYEMNSKAVK 249

Query: 467 FTDKMLQTLLEG 478
            +D+ML  L + 
Sbjct: 250 TSDEMLARLTQL 261



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 56/246 (22%), Gaps = 35/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R   +                    
Sbjct: 1   MMRSLWIAKTGLEGQQTSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        V      +       L+     +      + F  ++           
Sbjct: 61  QLPSGLQLGTGARVAATERIH---TAGNLNNTGGEMDIAINGRGFLQVE------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   L+         +S  ++     V DNA  +    +      Q   A  + +I
Sbjct: 112 QGYTRDGALQRDQNGQLTTVSGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQI 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                      + L  + + +  +T +   A+      D     +   +  S +      
Sbjct: 172 GQLQIATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAGSIMQNYVETSNVNVAEEL 231

Query: 217 MVVYTS 222
           + + T+
Sbjct: 232 VNMITT 237


>gi|163856437|ref|YP_001630735.1| flagellar basal body rod protein FlgG [Bordetella petrii DSM 12804]
 gi|163260165|emb|CAP42467.1| flagellar basal-body rod protein FlgG [Bordetella petrii]
          Length = 261

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 5/184 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354
           + +    +      +          +   D         T+ V+       +    ++  
Sbjct: 80  VFTQGNLNNTGSELDIAIDGKGFLQVDLPDGTQAYTRDGTLQVDQNGQLTTAGGYVIQPP 139

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +V    L       G   +        N       +A       L     N   +LE +
Sbjct: 140 INVPDNALSLTIGKDGTVSVTQPGAAGLNVQIGQLQLATFINPPGLQSVGENL--YLETD 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S   ++          I + Y  T  VN+ EEL  +I  +++Y +++K +  +D+ML  
Sbjct: 198 SSGPANILQPGIDGAGSILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLAR 257

Query: 475 LLEG 478
           L + 
Sbjct: 258 LTQL 261



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 57/246 (23%), Gaps = 35/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R   +                    
Sbjct: 1   MMRSLWIAKTGLEGQQTSMDVISNNLANVQTNGFKRGRAIFQDLMYQTLRQPGAQVGDAN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V +            L+   S +      + F  +      D     
Sbjct: 61  QLPTGLQLGTGVRVASTERV---FTQGNLNNTGSELDIAIDGKGFLQV------DLPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   L+             ++     V DNA  +    + +    Q   A  + +I
Sbjct: 112 QAYTRDGTLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPGAAGLNVQI 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                        L  V + +  +T S   A+      D     + + +  S +      
Sbjct: 172 GQLQLATFINPPGLQSVGENLYLETDSSGPANILQPGIDGAGSILQQYVETSNVNVAEEL 231

Query: 217 MVVYTS 222
           + + T+
Sbjct: 232 VNMITT 237


>gi|238927617|ref|ZP_04659377.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531]
 gi|238884542|gb|EEQ48180.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531]
          Length = 264

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 4/214 (1%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
             +  A  Q   ++      +L    RV      +      +       F    + D   
Sbjct: 53  GARNGADSQYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTT 112

Query: 329 KLCQG-ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNF 386
              +    +         S+   L DG ++ +    +   ++G   +       +  +  
Sbjct: 113 AYTRDGTWKLDSDRRMVTSDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEA 172

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +A       L    +N   ++  + S         +     +++       V + E
Sbjct: 173 GQITLARFVNPAGLTAVGKNL--FVVSDASGEAIESNPGEDGAGTLTQGTLEMSNVQIVE 230

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E+  +I  +++Y  ++K I  +D ML+   +  +
Sbjct: 231 EMVNMIVSQRAYESNSKAITTSDSMLEIANQLKR 264



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/175 (7%), Positives = 34/175 (19%), Gaps = 14/175 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           ++     A +       Q   +  NI N +     +                        
Sbjct: 1   MMRALWSAASGMKAQQSQMDVVAHNIANVNTYGGKKVRAEFQDLVYQTLREAGARNGADS 60

Query: 59  ----------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                        +          A+             E        + +  +      
Sbjct: 61  QYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTTAYTRDGTW 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                     S+  L    I   +    +  T + + +    +A +  + E   +
Sbjct: 121 KLDSDRRMVTSDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEAGQI 175


>gi|241766922|ref|ZP_04764728.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN]
 gi|241362626|gb|EER58474.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN]
          Length = 259

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 3/175 (1%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC-VNPQYRSNPSFLRDGGSVSKKFLW 363
                + +          +   D         +          N S       ++K    
Sbjct: 87  QQSGKDFDLAINGAGFFQVSMPDGTTAYTRDGSFTIDKDGQMVNSSGYPLTDGITKVAGA 146

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
              ++A   ++                +A       L    +N   + E   S +     
Sbjct: 147 VKASIAANGEVTFTDSAGKAVGTGRLTLASFINPAGLEPVGQNL--YKESIASGNPQTGS 204

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +   F  + + +  T  VN+ EEL  +I+ +++Y +++K I  +D+ML  L + 
Sbjct: 205 PTSAGFGELKQGFLETSNVNVVEELVTMIQTQRAYEMNSKAIQTSDQMLAKLAQL 259



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 29/156 (18%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   I  N+ N     Y R + +                    
Sbjct: 1   MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGANSSEQS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV       +     L               F  +            
Sbjct: 61  QLPTGLHLGLGVNVVATNR---DFRQGALQQSGKDFDLAINGAGFFQV------SMPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           +            +    N S   L   +   A  V
Sbjct: 112 TAYTRDGSFTIDKDGQMVNSSGYPLTDGITKVAGAV 147


>gi|94500243|ref|ZP_01306776.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65]
 gi|94427542|gb|EAT12519.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65]
          Length = 261

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 2/178 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                E+     +       F    + D      +  +  +       ++  +L +    
Sbjct: 82  TTGSLEETSQPLDLAINGRGFFQIALPDGQIAYTRDGTFHMDAEGNIVNSQGYLLEPNIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +         +  + D+  +      V        L     N   +LE   S 
Sbjct: 142 IPDQTNTMTISRDGIVSVTQFGDTTPQEIGQIDVVDFINPTGLQAVGGNL--FLETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + ++ + S+  F  I + +     V + EE+  +I V+++Y +++K++   D+MLQ L
Sbjct: 200 APEIGVASEDGFGSIEQGFLENSNVKVVEEMVKMITVQRAYEMNSKVVSSADQMLQYL 257



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/245 (7%), Positives = 48/245 (19%), Gaps = 37/245 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++   N       +I  N+ N     + +   +                    
Sbjct: 1   MHSALWVSKTGLNAQDHGLTTISNNLANVSTTGFKKDRAVFEDLIYQIQRQPGALSSQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +  +       L   S  +      + F  +            
Sbjct: 61  RLPSGLQLGTGVKVAGTQKIH---TTGSLEETSQPLDLAINGRGFFQIA------LPDGQ 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                        E    N    +L   +    +      +           D   +   
Sbjct: 112 IAYTRDGTFHMDAEGNIVNSQGYLLEPNITIPDQTNTMTISRDGIVSVTQFGDTTPQEIG 171

Query: 159 E---ISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           +   +  +     +    N  +    + +        D    + Q   E   +  +    
Sbjct: 172 QIDVVDFINPTGLQAVGGNLFLETAASGAPEIGVASEDGFGSIEQGFLENSNVKVVEEMV 231

Query: 215 NDMVV 219
             + V
Sbjct: 232 KMITV 236


>gi|261840277|gb|ACY00043.1| flagellar basal body rod protein FlgG [Helicobacter pylori 52]
          Length = 262

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRTDFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +       F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S    +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 55/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +  T                     
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRTDFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +      + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS        D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQG 210


>gi|308050370|ref|YP_003913936.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM
           9799]
 gi|307632560|gb|ADN76862.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM
           9799]
          Length = 262

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            + N+      +A       L    +N   +LE   S +    +        + +    T
Sbjct: 165 AAENQVIGQIEIANFVNPTGLEPIGQNM--FLETGASGAPIQGVPGLDGLGTLRQGALET 222

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             VN+ EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 223 SNVNVTEELVNMIESQRIYEMNSKVISTVDQML 255



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 32/156 (20%), Gaps = 15/156 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENKNM- 62
               ++   +      A+I  N+ NA    Y +   +                S+N  + 
Sbjct: 4   ALWISKTGLDAQQTDIATISNNLANASTVGYKKSRAIFEDLLYQTINQAGGISSQNTELP 63

Query: 63  ------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                         + + +  + +     L                         +    
Sbjct: 64  AGLTLGAGTKVAATQRIFSQGNMLTTDNSLDLMIEGPGFFEIQLPDGTIAYSRNGQFALD 123

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
            E          L    I   E+      +   EV 
Sbjct: 124 DEGQLVTPGAGFLLNPGIQVPEDAQSITVSGEGEVS 159


>gi|242309754|ref|ZP_04808909.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT
           98-5489]
 gi|239523755|gb|EEQ63621.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT
           98-5489]
          Length = 263

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  S  +       ++  +L
Sbjct: 76  SVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        V         +    ++                  L     N   +L
Sbjct: 136 LVPNITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIETVNFINPAGLHALGDNL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             N S    +       F  + + +  T  V L EE++ LI  +++Y  ++K I   D M
Sbjct: 194 NTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 253

Query: 472 LQTLLEGVK 480
           LQ + +  +
Sbjct: 254 LQIVNQLKR 262



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 50/255 (19%), Gaps = 34/255 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q      NI N +   Y +                        
Sbjct: 1   MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K           + +        F  ++              
Sbjct: 61  LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIE------LPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   E    N    +L   +    +    N  T          + +     +I 
Sbjct: 115 TRDGSFKLDDEGNVVNSQGYLLVPNITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIE 174

Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            +          L +   +N              +   Q      + S +  +  +    
Sbjct: 175 TVNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 234

Query: 215 NDMVVYTSDGTTLFE 229
                Y ++  ++  
Sbjct: 235 VGQRAYEANSKSIQT 249


>gi|313141242|ref|ZP_07803435.1| flagellar basal-body rod protein distal rod protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313130273|gb|EFR47890.1| flagellar basal-body rod protein distal rod protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 262

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 55/189 (29%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  S  +       ++  +L
Sbjct: 75  SVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQGYL 134

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         +    ++                  L     N   +L
Sbjct: 135 LVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFINPAGLHALGDNL--YL 192

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             N S    +       F  + + +  T  V L EE++ LI  +++Y  ++K I   D M
Sbjct: 193 NTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 252

Query: 472 LQTLLEGVK 480
           LQ + +  +
Sbjct: 253 LQIVNQLKR 261



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/252 (8%), Positives = 48/252 (19%), Gaps = 34/252 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
               A         Q      NI N +   Y +                         SP
Sbjct: 3   ALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTLSP 62

Query: 48  ENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             + V          K           + +        F  ++                 
Sbjct: 63  TGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIE------LPDGTIAYTRD 116

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +   E    N    +L   +    +    N  T          + +     +I  + 
Sbjct: 117 GSFKLDDEGNVVNSQGYLLVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVN 176

Query: 165 RF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                    L +   +N              +   Q      + S +  +  +       
Sbjct: 177 FINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQ 236

Query: 218 VVYTSDGTTLFE 229
             Y ++  ++  
Sbjct: 237 RAYEANSKSIQT 248


>gi|119953549|ref|YP_945759.1| flagellar basal body rod protein FlgG [Borrelia turicatae 91E135]
 gi|119862320|gb|AAX18088.1| flagellar basal-body rod protein FlgG [Borrelia turicatae 91E135]
          Length = 264

 Score = 73.9 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           A       L     N   + E   S               + +       V++ EE+  +
Sbjct: 178 ARFVNPAGLNAIGNNI--FKETIGSGEEISGTPGSSGMGRLRQGILEMSNVSIAEEMVTM 235

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I  +++Y I++K I  +D ML       +
Sbjct: 236 IVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/194 (6%), Positives = 35/194 (18%), Gaps = 27/194 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMKAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQKRAGTPATEDT 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +        + ++      L A +           F  +               
Sbjct: 61  VSPLGNQVGHGTKVSATHRIFEQGNLQATNLKTDVAIEGDGFYKIL------LPDGTYGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +              L   +    E +  +   S   +  ++ D   +      
Sbjct: 115 TRDGSFKIDANGDLVTSQGYKLLPEISFPEEYIKDSIIISQEGIISVKVDGSPDPIELGQ 174

Query: 162 NLRRFLSELTVVND 175
                      +N 
Sbjct: 175 MEIARFVNPAGLNA 188


>gi|213613181|ref|ZP_03371007.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 110

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +     ++ +Y +   +      +A    N  L     N   W     S    L      
Sbjct: 1   MNNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSG 58

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            F  ++        V+L +EL  +I  +++Y  + + I   D++L TL+  
Sbjct: 59  NFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 109


>gi|269138584|ref|YP_003295284.1| flagellar basal body rod protein [Edwardsiella tarda EIB202]
 gi|267984244|gb|ACY84073.1| flagellar basal body rod protein [Edwardsiella tarda EIB202]
 gi|304558594|gb|ADM41258.1| Flagellar basal-body rod protein FlgG [Edwardsiella tarda FL6-60]
          Length = 260

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNGQLVTASGFQVTPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      ++    +  L     N   + E   S 
Sbjct: 142 IPANATSMTIGRDGIVSVTLQGQAAAQQVGQLTLSTFINDAGLESVGENL--YQETESSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L +
Sbjct: 200 APTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 28/155 (18%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R+  +                    
Sbjct: 1   MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       Q F  +           +
Sbjct: 61  TLPSGLQLGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQV------TLPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                    +          S   +   +   A  
Sbjct: 112 QAYTRDGSFQVDQNGQLVTASGFQVTPAITIPANA 146


>gi|163784308|ref|ZP_02179218.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880426|gb|EDP74020.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 200

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/186 (8%), Positives = 39/186 (20%), Gaps = 28/186 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     +             I  NI N +   + +                        
Sbjct: 1   MIRALWTSATGMEAQQTNLDVISNNIANVNTVGFKKSRANFEDLIYQNLRDPGVMSSTET 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V      +          L      +      + F  ++              
Sbjct: 61  RVPTGMQVGLGVKLSDISKTFSQGSLMKTDRPLDIAIQGKGFFKVE------LPGGGEAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEI 160
                 +   + Y        L   +   A E ++    +    V  +R +   +   E+
Sbjct: 115 TRAGNFQIDDQGYIVTPEGYRLSPNIQITAPETLISINISENGNVYAVRNEGGVQTTEEL 174

Query: 161 SNLRRF 166
             +  +
Sbjct: 175 GQINLY 180


>gi|304438315|ref|ZP_07398256.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368681|gb|EFM22365.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 264

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 66/214 (30%), Gaps = 4/214 (1%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
             +  A  Q   ++      +L    RV      +      +       F    + D   
Sbjct: 53  GARNGADSQYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTT 112

Query: 329 KLCQG-ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNF 386
              +    +         ++   L DG ++ +    +   ++G   +       +  +  
Sbjct: 113 AYTRDGTWKLDSDRRMVTTDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEA 172

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +A       L    +N   ++  + S         +     +++       V + E
Sbjct: 173 GQITLARFVNPAGLTSVGKNL--FVVSDASGEAIESNPGEDGAGTLTQGTLEMSNVQIVE 230

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E+  +I  +++Y  ++K I  +D ML+   +  +
Sbjct: 231 EMVNMIVSQRAYESNSKAITTSDSMLEIANQLKR 264



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/175 (6%), Positives = 34/175 (19%), Gaps = 14/175 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           ++     A +       Q   +  NI N +     +                        
Sbjct: 1   MMRALWSAASGMKAQQSQMDVVAHNIANVNTYGGKKVRAEFQDLVYQTLREAGARNGADS 60

Query: 59  ----------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                        +          A+             E        + +  +      
Sbjct: 61  QYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTTAYTRDGTW 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                     ++  L    I   +    +  T + + +    +A +  + E   +
Sbjct: 121 KLDSDRRMVTTDGYLLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEAGQI 175


>gi|300854216|ref|YP_003779200.1| putative flagellar hook protein FlgE [Clostridium ljungdahlii DSM
           13528]
 gi|300434331|gb|ADK14098.1| predicted flagellar hook protein FlgE [Clostridium ljungdahlii DSM
           13528]
          Length = 323

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/307 (7%), Positives = 75/307 (24%), Gaps = 5/307 (1%)

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            +     +      F  +  +    +S+ +   +   +     +         +    + 
Sbjct: 20  NVTSDNIANSSTTGFKSKNMIFEDMLSQNLSDPSAPVDGGLGGINARQSGLGVKVAGINT 79

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ--NQLDEM 293
           +F   +S T     + +   G                        S    +         
Sbjct: 80  DFTAGSSQTTNRSLDFMANKGGSYFVVSPDGDVSNANGGNASDTTSKSYYYTRDGAFTLD 139

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
               + +      +  N ++  G           + +       I               
Sbjct: 140 EAGNLLTQDGYHVMGYNVDDKTGAITDTASGTDTSNIVPPKCLQIAQYYTKDGAVDTAPQ 199

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             + +        ++     +I       +       +A       L++   N   +   
Sbjct: 200 DQTTADNEKVTSWSVGPSTGIITVKTALGSHQVGRIALASFQNEGGLVKDGGNL--YESS 257

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             S            +  +++       V+L ++ + +I   +++  + K+I   D +L+
Sbjct: 258 PNSGDAAYGTPGTN-YGSLNQGALEMSNVDLAQQFTDMIVATRAFQANGKIITTDDTILE 316

Query: 474 TLLEGVK 480
            L+   +
Sbjct: 317 DLVNLKR 323



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/313 (6%), Positives = 54/313 (17%), Gaps = 7/313 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      Q+      NI N+    +  ++ +                +  +
Sbjct: 1   MLPSLYTAISGLRVNQQKLNVTSDNIANSSTTGFKSKNMIFEDMLSQNLSDPSAPVDGGL 60

Query: 63  FDKVLHA-------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                                               A+   +         + ++    +
Sbjct: 61  GGINARQSGLGVKVAGINTDFTAGSSQTTNRSLDFMANKGGSYFVVSPDGDVSNANGGNA 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + +      T              +      +  + D +            +   V   
Sbjct: 121 SDTTSKSYYYTRDGAFTLDEAGNLLTQDGYHVMGYNVDDKTGAITDTASGTDTSNIVPPK 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            ++       D       +D       ++   S         V        +        
Sbjct: 181 CLQIAQYYTKDGAVDTAPQDQTTADNEKVTSWSVGPSTGIITVKTALGSHQVGRIALASF 240

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
             E        +        G       G+        AL      +   F + +     
Sbjct: 241 QNEGGLVKDGGNLYESSPNSGDAAYGTPGTNYGSLNQGALEMSNVDLAQQFTDMIVATRA 300

Query: 296 VLIGSFSEKDPIA 308
                        
Sbjct: 301 FQANGKIITTDDT 313


>gi|307748584|gb|ADN91854.1| Hypothetical protein CJM1_1678 [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 88

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +A +  N  L E   N   +     S +  +          +  S      V+L   L+ 
Sbjct: 1   MASVANNSGLEEIGGNL--FKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTE 58

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y  ++K I  +D+MLQTL++  +
Sbjct: 59  LIIIQRGYQANSKTISTSDQMLQTLIQLKQ 88


>gi|296103609|ref|YP_003613755.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058068|gb|ADF62806.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 260

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 75/249 (30%), Gaps = 4/249 (1%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               + +N + +++      +N       V        + +   ++  Q           
Sbjct: 11  GLEAQQLNMDVISNNLANVNTNGFKRQRAVFQDLLYQNMRQPGAQSTEQNTLPSGLQLGT 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +  ++   + +    +      +          ++  D             +P  +   
Sbjct: 71  GVRPVSTQRVHTQGGMNQTGDEYDVAIEGEGFFQVQMPDGSTAYTRDGHFSKSPDGQLVN 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYC--DSFNKNFIFDPVAGINTNVTLLEYARN 406
           +                K   G   +++      +  +      +     N  L     N
Sbjct: 131 AEGYPIQPGIVIPQDATKLNIGSDGIVSVKVPGQAEEQQIGQLTLTTFVNNAGLESIGGN 190

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              + E   S + +           + +SY     VN+ EEL  +I+V+++Y I++K + 
Sbjct: 191 L--YKETQSSGAPNELNPGMESAGTLKQSYVEISNVNVAEELVTMIQVQRAYEINSKAVS 248

Query: 467 FTDKMLQTL 475
            +D+MLQ L
Sbjct: 249 ASDQMLQRL 257



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 10/155 (6%), Positives = 33/155 (21%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N +   + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQLNMDVISNNLANVNTNGFKRQRAVFQDLLYQNMRQPGAQSTEQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+ +  +       ++            + F  ++          +
Sbjct: 61  TLPSGLQLGTGVRPVSTQRVH---TQGGMNQTGDEYDVAIEGEGFFQVQ------MPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +          S +    N     +   ++   + 
Sbjct: 112 TAYTRDGHFSKSPDGQLVNAEGYPIQPGIVIPQDA 146


>gi|187478187|ref|YP_786211.1| flagellar basal body rod protein FlgG [Bordetella avium 197N]
 gi|115422773|emb|CAJ49301.1| flagellar basal-body rod protein [Bordetella avium 197N]
          Length = 261

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           ++   +V    L    N  G   +        N       VA       L     N   +
Sbjct: 136 IQPPINVPDNALSMAINKEGVVSVTLPGNAGVNVQIGQLQVATFINPAGLQSVGENL--Y 193

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           LE + S   +L          I ++Y  T  VN+ EEL  +I  +++Y +++K +  +D+
Sbjct: 194 LETDASGPANLLQPGADGAGSIMQNYVETSNVNVAEELVNMITAQRAYEMNSKAVKTSDE 253

Query: 471 MLQTLLEG 478
           ML  L + 
Sbjct: 254 MLARLTQL 261



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/147 (6%), Positives = 28/147 (19%), Gaps = 15/147 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A+    +       I  N+ N     + R   +               V    
Sbjct: 1   MMRSLWIAKTGLESQQTSMDVISHNLANVQTNGFKRERAVFQDLMYQTLRQPGAQVGDAN 60

Query: 57  SENKNM---------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                +           + LH+  +       +      +     D             L
Sbjct: 61  QLPTGLQLGTGARVAATQRLHSAGNLNNTGAEMDVAIQGRGFFQVDLPDGTQAYTRDGGL 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEV 134
                     +   ++   +      +
Sbjct: 121 GMDQNGQLTTMGGYVIQPPINVPDNAL 147


>gi|49082998|gb|AAT50899.1| PA1082 [synthetic construct]
          Length = 262

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D      +  S  +  + Q  ++  F  +   V         
Sbjct: 91  QPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNSDGQIVTSNGFALEPVIVVPNETQTFT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +    ++  +       A       L     N   +LE   S +  +     
Sbjct: 151 VGQDGTVSVTTTGNAQPQVIGNIQTADFINPAGLQAIGNNL--FLETGSSGAPQVGTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                ++++      VN+ EEL  +I  +++Y +++K+I   D+ML
Sbjct: 209 NGLGTVAQNTLENSNVNVVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/245 (7%), Positives = 47/245 (19%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L+    ++   +       +I  N+ N     + R                        
Sbjct: 1   MLSALWVSKTGLSAQGMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          L      +      + F  +            
Sbjct: 61  ELPSGLQLGTGVRVVGTQKI---FTPGSLQTTEQPLDMAVNGRGFFQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                      + +      +   L   ++   E                  +A  ++  
Sbjct: 112 VSYTRDGSFHLNSDGQIVTSNGFALEPVIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIG 171

Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            I             + N+      +S            +     + +   +  V     
Sbjct: 172 NIQTADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLGTVAQNTLENSNVNVVEELV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMITT 236


>gi|70729006|ref|YP_258740.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens
           Pf-5]
 gi|68343305|gb|AAY90911.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens
           Pf-5]
          Length = 261

 Score = 73.5 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 51/180 (28%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F      D      +  +  +  + Q  +   F  
Sbjct: 77  TQKNFTAGSLQTTEQPLDLAINGRGFFQILQPDGTTAYTRDGTFHLNSDGQIVTASGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +  ++       A       L     N   +LE
Sbjct: 137 EPAVVVPNDAQTFTVGQDGTVSITIAGNPASQVIGNLQTADFINPAGLQAQGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    ++      V+  EE+  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQIGTPGLNGFGTTLQNTLEASNVSTVEEMVNMITTQRAYEMNSKVISTADQML 254



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 49/242 (20%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T         N     L      +      + F  + +          +  
Sbjct: 61  ELPTGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDLAINGRGFFQILQ------PDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--ELE 159
                   + +      S   L   V+   +               I  +   ++   L+
Sbjct: 115 TRDGTFHLNSDGQIVTASGFALEPAVVVPNDAQTFTVGQDGTVSITIAGNPASQVIGNLQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++           N+      AS                  + +   +         ++
Sbjct: 175 TADFINPAGLQAQGNNLFLETAASGAPQIGTPGLNGFGTTLQNTLEASNVSTVEEMVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 TT 236


>gi|298529926|ref|ZP_07017328.1| flagellar basal-body rod protein FlgG [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509300|gb|EFI33204.1| flagellar basal-body rod protein FlgG [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 260

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            +++    D         P+        L    RN     E   S      +  +  F  
Sbjct: 154 GNIVCVDGDDNVIAEGEIPIYRFMNPAGLNSAGRNLYS--ETEASGPATEGVPGEENFGS 211

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I      +  V + +E+  +I  +++Y I++K I  +D+MLQ   +  +
Sbjct: 212 IRSGALESSNVEIVDEMVNMIIGQRAYEINSKAIQTSDQMLQMANQMKR 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/143 (6%), Positives = 24/143 (16%), Gaps = 28/143 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A                N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMAAQQMNIDVTSNNLANVNTDGFKKSQAQFEDLMYQTLKVAGTENLTGD 60

Query: 46  -SPENVTVVTQR---SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V       S +K           + +        F  +          +    
Sbjct: 61  RVPTGLQVGMGTNPLSVHKIFTQGDYKQTGNPLDLTIEGDGFFQVM-------ANDEVRY 113

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 +   +      +   L 
Sbjct: 114 TRAGSFKPDQDGRIVTANGYPLQ 136


>gi|15646192|ref|NP_208376.1| flagellar basal body rod protein FlgG [Helicobacter pylori 26695]
 gi|188528376|ref|YP_001911063.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470]
 gi|217033804|ref|ZP_03439229.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10]
 gi|308183740|ref|YP_003927867.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4]
 gi|2314768|gb|AAD08623.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695]
 gi|188144616|gb|ACD49033.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470]
 gi|216943702|gb|EEC23145.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10]
 gi|261838871|gb|ACX98637.1| flagellar basal-body rod protein [Helicobacter pylori 51]
 gi|297380761|gb|ADI35648.1| flagellar basal-body rod protein FlgG [Helicobacter pylori v225d]
 gi|308062867|gb|ADO04755.1| flagellar basal body rod protein FlgG [Helicobacter pylori Cuz20]
 gi|308064367|gb|ADO06254.1| flagellar basal body rod protein FlgG [Helicobacter pylori Sat464]
 gi|308065925|gb|ADO07817.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4]
 gi|315585990|gb|ADU40371.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 35A]
 gi|317178306|dbj|BAJ56095.1| flagellar basal body rod protein FlgG [Helicobacter pylori F16]
 gi|317179787|dbj|BAJ57575.1| flagellar basal body rod protein FlgG [Helicobacter pylori F30]
 gi|317181286|dbj|BAJ59072.1| flagellar basal body rod protein FlgG [Helicobacter pylori F32]
 gi|317182809|dbj|BAJ60593.1| flagellar basal body rod protein FlgG [Helicobacter pylori F57]
 gi|332674396|gb|AEE71213.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 83]
          Length = 262

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +       F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S    +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGEAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +                        
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +      + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS        D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQG 210


>gi|224417699|ref|ZP_03655705.1| flagellar basal body rod protein FlgG [Helicobacter canadensis MIT
           98-5491]
 gi|253827048|ref|ZP_04869933.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT
           98-5491]
 gi|253510454|gb|EES89113.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT
           98-5491]
          Length = 263

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 55/189 (29%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  S  +       ++  +L
Sbjct: 76  SVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         +    ++                  L     N   +L
Sbjct: 136 LVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFINPAGLHALGDNL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             N S    +       F  + + +  T  V L EE++ LI  +++Y  ++K I   D M
Sbjct: 194 NTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 253

Query: 472 LQTLLEGVK 480
           LQ + +  +
Sbjct: 254 LQIVNQLKR 262



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 50/255 (19%), Gaps = 34/255 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q      NI N +   Y +                        
Sbjct: 1   MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K           + +        F  ++              
Sbjct: 61  LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIE------LPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   E    N    +L   +    +    N  T          + +     +I 
Sbjct: 115 TRDGSFKLDDEGNVVNSQGYLLVPNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIE 174

Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            +          L +   +N              +   Q      + S +  +  +    
Sbjct: 175 TVNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 234

Query: 215 NDMVVYTSDGTTLFE 229
                Y ++  ++  
Sbjct: 235 VGQRAYEANSKSIQT 249


>gi|167945879|ref|ZP_02532953.1| hypothetical protein Epers_04777 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 154

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%)

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                  + I         G S     NP    +   L    S +      +        
Sbjct: 3   NGPAPPNNYILYDPATESAGKSFPSSANPSQFDSFGGLSFRISGTPTVGDQLIVRNNTNA 62

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
                 ++     +      +N + +  E     +  +  +   +       + +     
Sbjct: 63  ATGDNRNALALAAMQSQDRMLNLSASYSEVYSQLVAGVGASTRQAEASLAAQEGLLERNR 122

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
            S     GVNL EE + L++ +Q+Y  S ++I
Sbjct: 123 ASQEEVSGVNLDEEAAKLVQFQQAYQASAEMI 154


>gi|74317650|ref|YP_315390.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057145|gb|AAZ97585.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans
           ATCC 25259]
          Length = 260

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+      ++   A +       F    + D      +  S     N Q  +   + 
Sbjct: 76  ATERIFTQGNLQQTGNAKDVAIQGNGFFQVLMPDGTTSYTRDGSFMADANGQLVTASGYA 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         +     +         +A       L     N     
Sbjct: 136 VQPAITIPADTQTLTIGRDGTVSVTQPGSATPVTIGTLQLAMFVNPAGLQSLGENLYA-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +             +++ Y  T  VN+ EEL  +I+ +++Y I++K I  +D+M
Sbjct: 194 ETAASGTPSSSAPGSNGAGLLNQGYVETSNVNVVEELVNMIQTQRAYEINSKAIQTSDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQRLTQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/157 (8%), Positives = 26/157 (16%), Gaps = 33/157 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRARAVFEDLLYQTIRQPGAQSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    +A         F  +            
Sbjct: 61  QLPSGLQIGTGVKPVATERI---FTQGNLQQTGNAKDVAIQGNGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
           +                   S   +   +   A+   
Sbjct: 112 TSYTRDGSFMADANGQLVTASGYAVQPAITIPADTQT 148


>gi|109946869|ref|YP_664097.1| flagellar basal body rod protein FlgG [Helicobacter acinonychis
           str. Sheeba]
 gi|109714090|emb|CAJ99098.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis
           str. Sheeba]
          Length = 262

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 66/261 (25%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +   V   F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAIVGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S    +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 55/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +                        
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +    + + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAIVGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS        D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210


>gi|50954410|ref|YP_061698.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950892|gb|AAT88593.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 390

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/371 (9%), Positives = 89/371 (23%), Gaps = 4/371 (1%)

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +    + N +         ++A   V    ++  +V      A   + +  + +    +
Sbjct: 22  TANNIANVNTAGFKASSVQFEDALSQVTRTASAPTDVIGGTTPAAVGLGVRAAGIDTDWT 81

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +                D    +          +                          
Sbjct: 82  QGATQTTGKATNLTLNGDGFFVIRSAGQTQYTRAGNFTTDDSGTLVTPDGARVQGWGAAG 141

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             V   +    +                    +    A     + + +++ D+       
Sbjct: 142 GVVNSGVAPSTITIPLNVQSPAVATTSATATGNLPSDAAAGAVVSSSVRVHDAAGGERTL 201

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L   +              G + + P  F A            GIS  +     Y    
Sbjct: 202 TLTFTSSGGGSWSVNAADANGATASGPLAFTAGARSTGGTLAVGGISVDMTQMTVYAGAT 261

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S      + S               +   + +          VA  +      +   ++ 
Sbjct: 262 SAGITKQNGSAAGALQSFTFDQDGTIEGSFSNGARLAIGRVAVATFSNPSGFQKAGSSAF 321

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                  +DS    + +      I+        V+L  E + LI  ++++  S ++I  +
Sbjct: 322 ----TATADSGIPQVAADSGTGTITVGAYEGSNVDLGREFTNLIVSQRAFQASARVITTS 377

Query: 469 DKMLQTLLEGV 479
           D++LQ L +  
Sbjct: 378 DEILQELTQLK 388



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/332 (4%), Positives = 60/332 (18%), Gaps = 32/332 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           +L   +                  NI N +   +         +                
Sbjct: 1   MLRSLDSGVFGLQAQQTMLDVTANNIANVNTAGFKASSVQFEDALSQVTRTASAPTDVIG 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            T                     A        +     +          +          
Sbjct: 61  GTTPAAVGLGVRAAGIDTDWTQGATQTTGKATNLTLNGDGFFVIRSAGQTQYTRAGNFTT 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                        +                ++      +++ A        +        
Sbjct: 121 DDSGTLVTPDGARVQGWGAAGGVVNSGVAPSTITIPLNVQSPAVATTSATAT-------- 172

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +    A+       +   D    + +  +  ++    +  +    ++G T   
Sbjct: 173 -----GNLPSDAAAGAVVSSSVRVHDAAGGERTLTLTFTSSGGGSWSVNAADANGATASG 227

Query: 230 TVP------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
            +              +   +V      ++         + +    G +++    +D  +
Sbjct: 228 PLAFTAGARSTGGTLAVGGISVDMTQMTVYAGATSAGITKQNGSAAGALQSFTFDQDGTI 287

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
               +    +A   +   +  +P         
Sbjct: 288 EGSFSNGARLAIGRVAVATFSNPSGFQKAGSS 319


>gi|88704304|ref|ZP_01102018.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis
           KT71]
 gi|88701355|gb|EAQ98460.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis
           KT71]
          Length = 243

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  K   A +       F    + D +    +  S  I       ++  +      
Sbjct: 63  FTQGNLTKTDGALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGIVVTSAGYQLQPPI 122

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +V   A     +     +         +        L     N   +LE   S
Sbjct: 123 TVPQDALSVTIAADGTVSVQQPGTAAATQIGLVQLTDFINPAGLQARGENL--FLESGAS 180

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +             +S+ Y  +  VN+ EEL  +I+ +++Y ++++ I   D+MLQ + 
Sbjct: 181 GAPQPGNPGLNGLGTLSQGYVESSNVNVVEELVNMIETQRAYEMNSRAISTADQMLQYIS 240

Query: 477 E 477
            
Sbjct: 241 N 241



 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/144 (7%), Positives = 28/144 (19%), Gaps = 27/144 (18%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI------------------SPENVTVVTQRSENKN- 61
            ++I  N+ N     + R   +                      P  + + T        
Sbjct: 1   MSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDTLLPSGLQIGTGTRVVATE 60

Query: 62  --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L     A+      + F  +           N         + + +      +
Sbjct: 61  RLFTQGNLTKTDGALDIAIQGRGFFEIL------LPDGNQAFTRDGSFQINDQGIVVTSA 114

Query: 120 EDILGKTVIDNAEEVVQNFNTSAR 143
              L   +    + +         
Sbjct: 115 GYQLQPPITVPQDALSVTIAADGT 138


>gi|317013400|gb|ADU84008.1| flagellar basal body rod protein FlgG [Helicobacter pylori
           Lithuania75]
          Length = 262

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 66/261 (25%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +       F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S +  +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGNAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 55/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +                        
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +      + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS +      D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGNAIVGNPDSQG 210


>gi|148266214|ref|YP_001232920.1| hypothetical protein Gura_4204 [Geobacter uraniireducens Rf4]
 gi|146399714|gb|ABQ28347.1| protein of unknown function DUF1078 domain protein [Geobacter
           uraniireducens Rf4]
          Length = 294

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 54/224 (24%)

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
              S      V    I+                  + A +L  + +          N  G
Sbjct: 71  GSSSYENTENVTDLGIQGNSFFALKPPTTAAPVAAQNAALLSRAGAFHVDKTLTMVNPDG 130

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
             + D   +       G +         +  P+ L    +             G      
Sbjct: 131 YQVLDTAGNPIQFSNTGAAPATDFAKIVKIEPNGLITYLAQDGITTNYYNASGGVGVATT 190

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
               +  +       A +                   + +       +       I  + 
Sbjct: 191 PANAATVQRLAVVSAADVTGLEKAGGSLYTPTASSGVSAAAFSLAGNQPNGTSEKILSNS 250

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                V++  +   +I  +++Y+ ++K I   D+M Q +L   +
Sbjct: 251 LEQSNVDMASQFVKMIITQRAYSANSKTITTADEMTQEILSLKR 294



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/200 (9%), Positives = 43/200 (21%), Gaps = 10/200 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTV 52
           MS+        +   N  +    I  NI N +   +    T+ +           +    
Sbjct: 1   MSITGAMFTGVSGLLNNGEAMNVIGNNISNVNTIGFKYGRTLFSDMLSANIGNDSQVGRG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISKLRDS 110
           V  +               +         SF ALK     +     N +           
Sbjct: 61  VQMQKVENIFGSSSYENTENVTDLGIQGNSFFALKPPTTAAPVAAQNAALLSRAGAFHVD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                 N     +  T  +  +        +    + ++ + +  I     +        
Sbjct: 121 KTLTMVNPDGYQVLDTAGNPIQFSNTGAAPATDFAKIVKIEPNGLITYLAQDGITTNYYN 180

Query: 171 TVVNDAIKFKTASKHDAHDF 190
                 +    A+       
Sbjct: 181 ASGGVGVATTPANAATVQRL 200


>gi|297538898|ref|YP_003674667.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301]
 gi|297258245|gb|ADI30090.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301]
          Length = 260

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+      ++     +       F    + D      +  S       Q  ++  F 
Sbjct: 76  ATERIFSQGNLQQTSNNKDVAIQGAGFFQVLMPDGTTAYTRDGSFQTDSQGQLVTSSGFP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       +          I     +         +A       L     N   ++
Sbjct: 136 VQPAITVPANAESFTVGRDGTVSITTTGSTATTQIGTLQLATFINTAGLQGKGENL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +  ++         +++ Y  T  VN+ EEL  +I+ +++Y I++K I  +D+M
Sbjct: 194 ETTASGNPTVNNPGTNGAGLLTQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQKLTQM 260



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 27/155 (17%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQTSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S+          F  +            
Sbjct: 61  QLPSGLQLGTGVRPVATERI---FSQGNLQQTSNNKDVAIQGAGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +        +   +      S   +   +   A  
Sbjct: 112 TAYTRDGSFQTDSQGQLVTSSGFPVQPAITVPANA 146


>gi|149194278|ref|ZP_01871375.1| flagellar basal-body rod protein distal rod protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135453|gb|EDM23932.1| flagellar basal-body rod protein distal rod protein [Caminibacter
           mediatlanticus TB-2]
          Length = 262

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 64/217 (29%), Gaps = 2/217 (0%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                        +    +      +   + ++      ++     +       F    +
Sbjct: 48  TMEYAGTATSTTTKSPTGINVGLGVRPTAITKIFTQGNLKQTNNNLDLAIQGDGFFQVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            D      +  +  +  +    ++  +              V         I     +  
Sbjct: 108 PDGRIGYTRDGAFKLDADGNIVTSDGYKLIPNITLPPDTVQVSIGTDGTVSILQAGQTQM 167

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +A       L     N   ++  + S    + +  Q     I + +     V 
Sbjct: 168 QQIGQIQLAKFINPAGLHSLGSNL--YINTSASGDPIVDVPGQTGLGEIRQGFIEMSNVQ 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L EE++ LI  +++Y+ ++K IM +D+MLQT+    +
Sbjct: 226 LVEEMTDLITGQRAYDAASKAIMTSDEMLQTVNNLKR 262



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 50/216 (23%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q   +  NI N +   Y ++                       
Sbjct: 1   MVRSLYTAATGMMAQQTQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTATSTTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K      L   ++ +        F  ++              
Sbjct: 61  KSPTGINVGLGVRPTAITKIFTQGNLKQTNNNLDLAIQGDGFFQVQ------LPDGRIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE--VQKIRADADKEIELE 159
                 +   +          L   +    + V  +  T      +Q  +    +  +++
Sbjct: 115 TRDGAFKLDADGNIVTSDGYKLIPNITLPPDTVQVSIGTDGTVSILQAGQTQMQQIGQIQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++         ++ ++     +AS     D   Q  
Sbjct: 175 LAKFINPAGLHSLGSNLYINTSASGDPIVDVPGQTG 210


>gi|146307867|ref|YP_001188332.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina ymp]
 gi|145576068|gb|ABP85600.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp]
          Length = 261

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +      +       F      D      +  S  +  + Q  ++  F  
Sbjct: 77  TQKIFTAGSLQTTEQPLDMAINGRGFFQILQPDGTVSYTRDGSFHLNSDGQIVTSQGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V    +            +    +   +      +A       L     N   +LE
Sbjct: 137 EPAIVLPNEVRTFTVGEDGTVSVTTAGNPQPQIIGNIQLADFVNPAGLEAIGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +            ++      V++ EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/252 (7%), Positives = 53/252 (21%), Gaps = 28/252 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     ++   +       +I  N+ N     + R                        
Sbjct: 1   MLPALWVSKTGLSAQDMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQSSQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97
                      V VV  +          L      +      + F  + +      +  +
Sbjct: 61  ELPSGLQLGTGVRVVGTQKI---FTAGSLQTTEQPLDMAINGRGFFQILQPDGTVSYTRD 117

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
            S          + + ++   +  +  +       E      T+A   Q       +  +
Sbjct: 118 GSFHLNSDGQIVTSQGFALEPAIVLPNEVRTFTVGEDGTVSVTTAGNPQPQIIGNIQLAD 177

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                    +     +           +   + L        + S +  +  +V      
Sbjct: 178 FVNPAGLEAIGNNLFLETGSSGAPQVGNPGLNGLGTTLQNTLENSNVSVVEELVNMITTQ 237

Query: 218 VVYTSDGTTLFE 229
             Y  +   +  
Sbjct: 238 RAYEMNSKVIST 249


>gi|1196326|gb|AAB51418.1| flagellar hook protein [Borrelia burgdorferi]
          Length = 372

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/362 (7%), Positives = 77/362 (21%), Gaps = 21/362 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE       +    + 
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKKVTFACNL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              +   +  + A+  D        +  L      + +  +    +       + T L  
Sbjct: 181 DKRL--PLIQEGANPADIARGTWVVNKSLYDSFGNVSVLELRVVKDLNTPNLWNATVLIN 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA------LLQIRDSVV 283
                      ++    +  N        +     +    G           + ++   V
Sbjct: 239 GEQNSNFTLGFDNEGALASLNGQPGQKGDILQIPITFNVLGANVGEVGETQTVNLKLGTV 298

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
             + + + + A         +D           +     I  + +   +     I +   
Sbjct: 299 GSYTDSITQFADSSSTKAIIQDGYGMGYMENYEIDQDGVIVGIYSNGIRRDLGKIALASF 358

Query: 344 YR 345
             
Sbjct: 359 MN 360


>gi|239907792|ref|YP_002954533.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus
           RS-1]
 gi|239797658|dbj|BAH76647.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus
           RS-1]
          Length = 260

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +S        P+     N  L    RN         S + +           +++ +  
Sbjct: 161 ANSAELAATDIPLYTFINNAGLTAEGRNLYST--SQASGAANEVTPGNQNAGTLAQGFLE 218

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V L +E+  LI  +++Y  ++K I   D MLQT +   +
Sbjct: 219 MSNVELVDEMVGLIVGQRAYEANSKSITTADGMLQTAVNIKR 260



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/136 (5%), Positives = 23/136 (16%), Gaps = 14/136 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           ++     A         Q  ++  N+ N +   + +                    V   
Sbjct: 1   MMRSLWTASTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETVGGN 60

Query: 57  SENKNMFDKVLHA--------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                +   +               +             E     D             +
Sbjct: 61  RLPTGLQVGLGVKPTTVHKFFTQGDMQNTGNQLDIAIQGEGFFKVDVNGRELYTRAGSFK 120

Query: 109 DSLESYSKNLSEDILG 124
            + +      +   L 
Sbjct: 121 LNQDGTIVTANGYPLQ 136


>gi|229591869|ref|YP_002873988.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens
           SBW25]
 gi|229363735|emb|CAY51140.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25]
          Length = 261

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 2/184 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q+    +       ++     +       F      D      +  +  +  N Q  +  
Sbjct: 73  QIVGTQKNFSAGNLQQTGQPLDMAINGRGFFQILQPDGTTSYTRDGTFHLDSNGQIVTAN 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
            F  +   V                 I    +  ++       A       L     N  
Sbjct: 133 GFALEPAVVVPADAKTFTVGNDGTVSITVAGNPASQVIGNLQTADFINPAGLQAMGNNL- 191

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +LE   S +  +       F    +S   T  V+  EE+  +I  +++Y +++K+I   
Sbjct: 192 -FLETASSGAPQIGTPGLNGFGTTLQSTLETSNVSTVEEMVNMITTQRAYEMNSKVISTA 250

Query: 469 DKML 472
           D+ML
Sbjct: 251 DQML 254



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/245 (7%), Positives = 48/245 (19%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A+   +       +I  N+ N     + R                        
Sbjct: 1   MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +V  +          L      +      + F  + +          
Sbjct: 61  ELPSGLQLGTGVQIVGTQKN---FSAGNLQQTGQPLDMAINGRGFFQILQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-- 156
           +                   +   L   V+  A+               +  +   ++  
Sbjct: 112 TSYTRDGTFHLDSNGQIVTANGFALEPAVVVPADAKTFTVGNDGTVSITVAGNPASQVIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            L+ ++         + N+      +S                  S +   +        
Sbjct: 172 NLQTADFINPAGLQAMGNNLFLETASSGAPQIGTPGLNGFGTTLQSTLETSNVSTVEEMV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMITT 236


>gi|26991074|ref|NP_746499.1| flagellar basal body rod protein FlgG [Pseudomonas putida KT2440]
 gi|24986108|gb|AAN69963.1|AE016634_12 flagellar basal-body rod protein FlgG [Pseudomonas putida KT2440]
          Length = 261

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 51/180 (28%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +  +    +      +       F      D      +  +  +  + Q  ++  +  
Sbjct: 77  TQKSFVAGSLQTTDNPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTDNGYAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100
             P  + V T         +     L    + +      + F  + +      +  + + 
Sbjct: 61  ELPSGLQVGTGVRIVGTQKSFVAGSLQTTDNPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +   Y+   +  +          +      T+A           +  +   
Sbjct: 121 HLNSDGQIVTDNGYALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
               + + +   +  A            +          + S +  +  +V        Y
Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAY 240

Query: 221 TSDGTTLFE 229
             +   +  
Sbjct: 241 EMNSKVIST 249


>gi|218461124|ref|ZP_03501215.1| flagellar hook protein FlgE [Rhizobium etli Kim 5]
          Length = 91

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
            P+A + +   L   + N        +S               I         V+L  EL
Sbjct: 2   IPLANVASPDKLTLMSGNVYS--ANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGEL 59

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I+ ++SY  ++K+      ++  L+   +
Sbjct: 60  TEMIESQRSYTANSKVFQTGSDIMDVLVNLKR 91


>gi|226944494|ref|YP_002799567.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ]
 gi|226719421|gb|ACO78592.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ]
          Length = 260

 Score = 73.5 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            + +       F    + D      +  S  +  N Q  ++  +L  GG    +   +V 
Sbjct: 91  NSNDLAINGKGFFQVELPDGTTAYTRDGSFQLDENGQMVTSSGYLLMGGITIPENALSVT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +    ++         +A       L     N   +LE   S + + ++   
Sbjct: 151 VSQDGIVSVTQPGNAQANQVGQLNLALFINPAGLQSVGENL--YLETASSGAPNENIPGT 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML  L + 
Sbjct: 209 NGAGRLYQGYVETSNVNVVEEMVSMIQTQRAYEINSKAVETSDEMLARLTQL 260



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 23/239 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+    +   Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWTAKTGLESQQVQMDVIANNLANVATNGFKRTRAVFEDLLYQNLRQPGADNTTQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +  G +         K     +     +     
Sbjct: 61  KLPSGLQIGTGVR---PVATERLHSQGNLQGTENSNDLAINGKGFFQVELPDGTTAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              +          S  +L    T+ +NA  V  + +      Q   A A++  +L ++ 
Sbjct: 118 GSFQLDENGQMVTSSGYLLMGGITIPENALSVTVSQDGIVSVTQPGNAQANQVGQLNLAL 177

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                   +V  +      +S     +              +   +  V      ++ T
Sbjct: 178 FINPAGLQSVGENLYLETASSGAPNENIPGTNGAGRLYQGYVETSNVNVVEEMVSMIQT 236


>gi|217327976|ref|ZP_03444058.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14588]
 gi|217318403|gb|EEC26829.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14588]
          Length = 372

 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/443 (9%), Positives = 86/443 (19%), Gaps = 80/443 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNQVNMQGLQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q                       IS     ++  T    +++    
Sbjct: 116 LTGYPATGTPPTIQQGAN----------------PTNISIPNTLMAAKTTTTASMQINLN 159

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           S                  ++   ++      N   +      T               +
Sbjct: 160 SSDPLPSVNAFDASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDPT 219

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
            T       +F    V++SN    +  G I                              
Sbjct: 220 GTAEPAMKLVFNANGVLTSNPTENITTGAING---------------------------- 251

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                                     +        +    Q     + +    +  K   
Sbjct: 252 -------------------------AEPATFSLSFLNSMQQNTGANNIVATTQNGYKPGD 286

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +     ++ +Y +   +      +A    N  L     N   W     S    L 
Sbjct: 287 LVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNV--WSATQSSGVALLG 344

Query: 423 MKSQVVFNHISESYSNTVGVNLQ 445
                 F  ++        V+L 
Sbjct: 345 TAGTGNFGTLTNGALEASNVDLS 367


>gi|238758108|ref|ZP_04619288.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236]
 gi|238703646|gb|EEP96183.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236]
          Length = 260

 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D  N   +  S  +  N Q  ++  F              +    
Sbjct: 94  DIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQIQPAITIPANALKMTVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +  +      +     N  L     N   + E   S + +         
Sbjct: 154 DGIVSVTLPGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSGAPNETTPGLNGG 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/205 (7%), Positives = 43/205 (20%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +    A          +
Sbjct: 118 GSFQVDQNGQLVTSGGFQIQPAITIPANALKMTVGRDGIVSVTLPGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202


>gi|313895783|ref|ZP_07829337.1| flagellar hook-basal body complex protein FlhP domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975208|gb|EFR40669.1| flagellar hook-basal body complex protein FlhP domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 117

 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH- 422
              ++     +   Y +   +      VA       L +   N   + E N S+   +  
Sbjct: 2   ASVSIDTSGVITGTYTNGVRRAEAQVAVAKFPNPSGLTKLGGNL--YQESNNSNVKTVQP 59

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +     I+ S      V++ ++ S +I  ++ +  ++K+I  +D+ML+TL+   +
Sbjct: 60  QTVETAGAKITPSSLEMSNVDISDQFSDMIITQRGFQSNSKIITVSDEMLETLINMKR 117


>gi|78358198|ref|YP_389647.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220603|gb|ABB39952.1| Flagellar basal body rod protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 261

 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +         P+        L    RN   +L    S      +  +     I++ +   
Sbjct: 162 NGEELAAADIPLYTFINPAGLQAAGRNL--YLASEASGVAVEGVPGEDNVGTIAQGFLEM 219

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V + +E+  +I  +++Y +++K I  +D MLQT  +  +
Sbjct: 220 SNVEVVDEMVNMIVGQRAYEMNSKAIQASDNMLQTATQLKR 260



 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/143 (6%), Positives = 25/143 (17%), Gaps = 28/143 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A            +I  N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMIAQQLNIDTISNNLANVNTLGFKKSRAEFEDLMYQNMKIAGSVTGNDQ 60

Query: 47  --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           + +        F  +               
Sbjct: 61  RIPTGIQVGLGVRPTTVHKFFTQGDYSNTGNPLDLAIEGDGFFQV-------TVNGEPAY 113

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 + + +      +   L 
Sbjct: 114 TRAGAFKLNQDGTVVTANGYPLE 136


>gi|15612557|ref|NP_224210.1| flagellar basal body rod protein FlgG [Helicobacter pylori J99]
 gi|4156115|gb|AAD07066.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter
           pylori J99]
 gi|317015022|gb|ADU82458.1| flagellar basal body rod protein FlgG [Helicobacter pylori
           Gambia94/24]
          Length = 262

 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +       F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S    +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +                        
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +      + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS        D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210


>gi|91776311|ref|YP_546067.1| flagellar basal-body rod FlgG [Methylobacillus flagellatus KT]
 gi|91710298|gb|ABE50226.1| Flagellar basal-body rod FlgG [Methylobacillus flagellatus KT]
          Length = 261

 Score = 73.5 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 5/174 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDGGSVSKKF 361
                N +          +   D            ++ Q     ++   ++    V    
Sbjct: 87  QQTGNNKDVAISGEGFFQVLLPDGSTAYTRDGAFQLDNQGQLVTASGFTVQPAIIVPPNA 146

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
           L       G   ++     +         +A       L     N   ++E   S   ++
Sbjct: 147 LSLTVGRDGTVSVVLPDNPNNAVQIGTFQLATFINPAGLQSRGENL--YIETAASGPANI 204

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +         +   Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L
Sbjct: 205 NQPGLNGTGLLVHQYLETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLQRL 258



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/262 (7%), Positives = 59/262 (22%), Gaps = 33/262 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   I  N+ N     + +   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQMQMDVIANNLANVSTNGFKKTRAVFEDLLYQNIRQPGAQSSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L    +        + F  +           +
Sbjct: 61  QLPSGLQLGTGVRPVATERIH---IQGNLQQTGNNKDVAISGEGFFQVL------LPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +   +      S   +   +I     +             +  + +  +++
Sbjct: 112 TAYTRDGAFQLDNQGQLVTASGFTVQPAIIVPPNALSLTVGRDGTVSVVLPDNPNNAVQI 171

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               L  F++   + +        +       ++Q  +    +     + T   N  + +
Sbjct: 172 GTFQLATFINPAGLQSRGENLYIETAASGPANINQPGLNGTGLLVHQYLETSNVNVAEEL 231

Query: 219 VYTSDGTTLFETVPRDINFEKM 240
           V        +E   + I+    
Sbjct: 232 VSMIQTQRAYEINSKAISTSDQ 253


>gi|330808197|ref|YP_004352659.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376305|gb|AEA67655.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 261

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F      D      +  +  +  N Q  +   F  
Sbjct: 77  TQKNFTAGSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTFHLDSNGQIVNASGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   +                 I    +  ++       A       L     N   +LE
Sbjct: 137 EPAIIIPNDAQTFTVGRDGTVSITVAGNPASQVIGNLQTADFINPAGLQAVGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    ++   T  V+  EE+  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMITTQRAYEMNSKVISTADQML 254



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 52/242 (21%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +       +I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQVKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T         N     L      +      + F  + +          +  
Sbjct: 61  ELPSGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDMAIDGRGFFQILQ------PDGTTSY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                          N S   L   +I  ++A+      + +          +     L+
Sbjct: 115 TRDGTFHLDSNGQIVNASGFALEPAIIIPNDAQTFTVGRDGTVSITVAGNPASQVIGNLQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++         V N+      AS                  + +   +         ++
Sbjct: 175 TADFINPAGLQAVGNNLFLETAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 TT 236


>gi|308185371|ref|YP_003929504.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180]
 gi|308061291|gb|ADO03187.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180]
          Length = 262

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +       F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S    +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVKLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +                        
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +      + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS        D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210


>gi|149184207|ref|ZP_01862525.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21]
 gi|148831527|gb|EDL49960.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21]
          Length = 261

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 46/190 (24%), Gaps = 2/190 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L         + S  D     + +        G     +     +           +  
Sbjct: 72  DLAITGDGFFTTRSAADGSTLYTRSGSFSLSGTGNIVDSSGNRLQLFPVDANGQVTGNTL 131

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                         +    +     +   Y D   +      +A       L +      
Sbjct: 132 GDANLPPQNLAGSEFVGVTINEVGVVSASYADGSVEPVGAIALATFIAPTGLKKVGDA-- 189

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            W     S +          +  +         V++ EEL  LI  ++++  + K I   
Sbjct: 190 NWEGTGLSGAATYGSPGTGAYGSLLSGALERSNVDIAEELVGLITAQRNFQANAKAIDTA 249

Query: 469 DKMLQTLLEG 478
            ++ QT++  
Sbjct: 250 TQISQTVINL 259



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 44/182 (24%), Gaps = 16/182 (8%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQRSENKNMF 63
             NA      I  NI N++   + R  T  +                   + +S  +N  
Sbjct: 1   MKNAQTSLGVISHNIANSETYGFKRSRTEFSEIVAGSALTNPRMIQGIGASVKSITQNFA 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +    SA+        F   +          ++          S      + S + L
Sbjct: 61  LGPIEQTGSALDLAITGDGFFTTRSA-----ADGSTLYTRSGSFSLSGTGNIVDSSGNRL 115

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
               +D A   V         +        + + + I+ +    +     +       A 
Sbjct: 116 QLFPVD-ANGQVTGNTLGDANLPPQNLAGSEFVGVTINEVGVVSASYADGSVEPVGAIAL 174

Query: 184 KH 185
             
Sbjct: 175 AT 176


>gi|295097201|emb|CBK86291.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 260

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              RV             +       F    + D      +        N Q  +     
Sbjct: 76  STQRVHTQGGLNMTGNDTDVAIEGKGFFQVQLPDGSTAYTRDGHFDKNENGQLVNAEGHP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G V  +    ++        +     +  +      +A    +  L     N   + 
Sbjct: 136 ILPGVVVPQDAKEMQISPDGIVSVTLPGQAQPQQVGQLTLATFVNDAGLESIGGNL--YR 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  +D+M
Sbjct: 194 ETQSSGAPNELNPGLEDAGTLKQKYIETSNVNVAEELVNMIQVQRAYEINSKAVSASDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQRLTQL 260



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 51/246 (20%), Gaps = 39/246 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N +   + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQTNMDVISNNLANVNTNGFKRQRAVFQDLLYQTMRQPGAQASEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+ +  +       L+   +        + F  ++          +
Sbjct: 61  TLPSGLQLGTGVRPVSTQRVH---TQGGLNMTGNDTDVAIEGKGFFQVQ------LPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVI-----DNAEEVVQNFNTSAREVQKIRADAD 153
           +          +      N     +   V+        +       +     Q       
Sbjct: 112 TAYTRDGHFDKNENGQLVNAEGHPILPGVVVPQDAKEMQISPDGIVSVTLPGQAQPQQVG 171

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
           +       N     S    +    +   A         D    L QK  E   ++     
Sbjct: 172 QLTLATFVNDAGLESIGGNLYRETQSSGAPNELNPGLEDA-GTLKQKYIETSNVNVAEEL 230

Query: 214 NNDMVV 219
            N + V
Sbjct: 231 VNMIQV 236


>gi|332305617|ref|YP_004433468.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172946|gb|AEE22200.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 262

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 69/213 (32%), Gaps = 3/213 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+  A  ++   ++    +++    +            A +       F      D
Sbjct: 50  NQPGGRSSADTELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    T+    Q  +  +      +++         ++   ++       +  +
Sbjct: 110 GTIAYTRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +    +        + +    T  VN+
Sbjct: 170 VLGQISLSDFVNMTGLQPIGQNL--YVETATSGAPIQGVPGLEGLGTVVQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            EEL  LI+ ++ Y +++K+I   D ML  +++
Sbjct: 228 TEELVNLIESQRLYEMNSKVISAVDSMLGQVIQ 260



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 53/208 (25%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49
           +      ++   + A    A I  N+ NA    + +   +           P        
Sbjct: 1   MHPALWISKTGLDAAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  K      +    +A+      + F  +++             
Sbjct: 61  ELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQ------PDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ-KIRADADKEIELEI 160
               +   + E          L +  I   E+  Q   +   EV   IR  AD ++  +I
Sbjct: 115 TRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQVLGQI 174

Query: 161 ---SNLRRFLSELTVVNDAIKFKTASKH 185
                +     +    N  ++  T+   
Sbjct: 175 SLSDFVNMTGLQPIGQNLYVETATSGAP 202


>gi|294828153|ref|NP_712848.2| flagellar basal body rod protein FlgG [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293386000|gb|AAN49866.2| endoflagellar distal basal body rod protein [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 264

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                  G F              G  +         SN   L     + +  + N   +
Sbjct: 94  MAITGEMGFFKIQMPDGSFAFTRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 153

Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +   ++      D          +        L    +N   + E   S           
Sbjct: 154 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 211

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            F ++ + +     V + EE+  +I  +++Y  ++K I  +D ML T +   +
Sbjct: 212 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 264



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 29/153 (18%), Gaps = 26/153 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------P 47
               A            +I  N+ N +   + +                          P
Sbjct: 3   SLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSEIP 62

Query: 48  ENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             V V    R+             A  + +      +      +M        +      
Sbjct: 63  TGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAFTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
              +          +  +L   +I     ++  
Sbjct: 118 GSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 150


>gi|121596119|ref|YP_988015.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42]
 gi|222112274|ref|YP_002554538.1| flagellar basal-body rod protein flgg [Acidovorax ebreus TPSY]
 gi|120608199|gb|ABM43939.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42]
 gi|221731718|gb|ACM34538.1| flagellar basal-body rod protein FlgG [Acidovorax ebreus TPSY]
          Length = 260

 Score = 73.1 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   +R       ++   + +       F    + D      +  +  +    +  ++ 
Sbjct: 73  NVVATSRNFTQGSLQQSGNSLDVAIDGNGFFEVQLPDGTTGYTRDGAFKLDSQGRVVTSS 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                 G        ++         +    +   +      ++    +  L    +N  
Sbjct: 133 GLPVAPGITVPADAKSISISERGMVSVTVAGNPNPQQIGQLGMSSFINSAGLEPVGQNL- 191

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + E   S +             I + +     VN+ EEL  +I+ +++Y +++K I  +
Sbjct: 192 -YRESAASGAPQQAEPGTNGLGIIKQGFLENSNVNVVEELVTMIQTQRAYEMNSKAIQTS 250

Query: 469 DKMLQTL 475
           D+ML  L
Sbjct: 251 DQMLAKL 257



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 31/155 (20%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+        Q   I  N+ N     + R + +                    
Sbjct: 1   MMNSLWIAKTGMTAQQTQLDVISHNLANVSTTGFKRNNAVFEDLIYQNLRQVGSQTTEEN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV             L    +++        F  ++           
Sbjct: 61  QLPTGLHLGLGVNVVATSRN---FTQGSLQQSGNSLDVAIDGNGFFEVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +        +   +      S   +   +   A+ 
Sbjct: 112 TGYTRDGAFKLDSQGRVVTSSGLPVAPGITVPADA 146


>gi|108563958|ref|YP_628274.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPAG1]
 gi|207092034|ref|ZP_03239821.1| flagellar basal body rod protein FlgG [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|208435465|ref|YP_002267131.1| flagellar basal-body rod protein [Helicobacter pylori G27]
 gi|210135763|ref|YP_002302202.1| flagellar basal body rod protein FlgG [Helicobacter pylori P12]
 gi|217031740|ref|ZP_03437244.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128]
 gi|254780116|ref|YP_003058223.1| flagellar basal body rod protein FlgG [Helicobacter pylori B38]
 gi|298737122|ref|YP_003729652.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8]
 gi|107837731|gb|ABF85600.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1]
 gi|208433394|gb|ACI28265.1| flagellar basal-body rod protein [Helicobacter pylori G27]
 gi|210133731|gb|ACJ08722.1| flagellar basal-body rod protein [Helicobacter pylori P12]
 gi|216946587|gb|EEC25187.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128]
 gi|254002029|emb|CAX30288.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Helicobacter pylori B38]
 gi|298356316|emb|CBI67188.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8]
 gi|307638271|gb|ADN80721.1| Flagellar basal-body rod protein [Helicobacter pylori 908]
 gi|317010275|gb|ADU80855.1| flagellar basal body rod protein FlgG [Helicobacter pylori India7]
 gi|317011821|gb|ADU85568.1| flagellar basal body rod protein FlgG [Helicobacter pylori
           SouthAfrica7]
 gi|325996863|gb|ADZ52268.1| Flagellar basal-body rod protein [Helicobacter pylori 2018]
 gi|325998456|gb|ADZ50664.1| Flagellar basal-body rod protein [Helicobacter pylori 2017]
          Length = 262

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 2/261 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                T+        I+    N   V +               Q                
Sbjct: 4   SLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D +      +   + ++      ++     +       F    + D      +  +  + 
Sbjct: 64  DGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 ++  +L        +    V         +     + +       +A       
Sbjct: 124 EQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITLANFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N       N S    +          + + +     V L EE++ LI  +++Y 
Sbjct: 184 LHSMGDNLFSI--TNASGDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            ++K I   D MLQT+    +
Sbjct: 242 ANSKSIQTADAMLQTVNSLKR 262



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          +   NI N +   + +                        
Sbjct: 1   MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP+ + V          K           + +      + F  ++           +  
Sbjct: 61  LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +         +L    T+ ++  +V    + +    Q ++  ++   ++ 
Sbjct: 115 TRSGNFKLDEQGNLVTSEGYLLIPQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++N        ++ ++      AS        D + 
Sbjct: 175 LANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQG 210


>gi|182418417|ref|ZP_02949711.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521]
 gi|237666503|ref|ZP_04526488.1| flagellar basal-body rod protein FlgG (Distal rod protein)
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377799|gb|EDT75343.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521]
 gi|237657702|gb|EEP55257.1| flagellar basal-body rod protein FlgG [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 379

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 74/257 (28%), Gaps = 4/257 (1%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L       IN+ +  ++ +  E N +  DG  +     +A         +    +     
Sbjct: 124 LIGGNGMAINYTRDGNFQLDYEGNLVTSDGYRIMGYPLTATQPKTGTDTVPASGAAADGG 183

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                E+ +  I S      +  +++ V                   +       P    
Sbjct: 184 SISNKEVTKTGIDSVEPGSAVYVDADGVLKAASDTLQPLRIP-DSVFVPGDTTATPATED 242

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +   ++         +  V        L      SF        + G    V+       
Sbjct: 243 SWQKVQSFTIGKDGVITAVLANGKRTALGQVAMASFKNPAGLTAIGGNLYEVSANSGEVL 302

Query: 407 SIGWLEKNRSDSHDLHMK---SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
               +  ++            +   F  I +       V+L E+ + +I   +S+  S+K
Sbjct: 303 IKTSVNIDKKADGTADTTTFDNSKGFGDIIQGCLEASNVDLTEQFTDMITATRSFQASSK 362

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I   D++LQT+   ++
Sbjct: 363 MITTGDEILQTITGLMR 379



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/389 (7%), Positives = 77/389 (19%), Gaps = 35/389 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L       +      Q+   I  NI N     +       +                  
Sbjct: 1   MLRCMYSGISGMKVNQQKLDVIGNNIANVGTTAFKSSRAEFSDMLYQNAGVATSPTSNKG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                       + +       M      +    +      + +  +   +        +
Sbjct: 61  GTNAKQVGLGAKLASIDRV---MSQGNALSTGRTLDACVDGEGYFIVGNGLVDYTGAGTT 117

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T     +  +  + +     +       +                 + +   D      
Sbjct: 118 VTKDGKLIGGNGMAINYTRDGNFQLDYEGNLVTSDGYRIMGYPLTATQPKTGTDTVPASG 177

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +     +S   V    I           D           +  +              V
Sbjct: 178 AAADGGSISNKEVTKTGIDSVEPGSAVYVDADGVLKAASDTLQPL---------RIPDSV 228

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
           +    TT            +  +         +  +G   +  Q +         L  I 
Sbjct: 229 FVPGDTTATPATEDSWQKVQSFTIGKDGVITAVLANGKRTALGQVAMASFKNPAGLTAIG 288

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            ++  +  N  + + +  +    + D  A  +         D I+         ++E   
Sbjct: 289 GNLYEVSANSGEVLIKTSVNIDKKADGTADTTTFDNSKGFGDIIQGCLEASNVDLTEQFT 348

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                  +        +   + L  +  L
Sbjct: 349 DMITATRSFQASSKMITTGDEILQTITGL 377


>gi|262273527|ref|ZP_06051341.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP
           101886]
 gi|262222505|gb|EEY73816.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP
           101886]
          Length = 243

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 50/174 (28%), Gaps = 2/174 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
               +    A +   + G F    + D      +             +            
Sbjct: 65  SGAYQNTQQATDLAIMGGGFFQIEMPDGSTAYTRNGQFHRNSEGMMVTAAGLPLVPNIEI 124

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
            +   +          I    ++  +      +        L     N   + E   S +
Sbjct: 125 PENALSFTVGKDGIVNITMPGEAEPQEIGQLTLVNFTNPAGLEGLGGNL--FRETGASGA 182

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
               +  +    ++S+       V++ EE+  +I  +++Y ++ K++   D+ML
Sbjct: 183 PIEGVPGEEGLGYLSQYALEGSNVSVVEEMVNMITTQRAYEMNAKVVSSADQML 236



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/161 (6%), Positives = 33/161 (20%), Gaps = 15/161 (9%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPEN--------------VTVVTQRSENKNMFDKV 66
              I  N+ N +   + +   +                     V    Q           
Sbjct: 1   MQVISNNLANVNTVGFKQDRVVFEDLFYQTKKQPGAMADQQNEVPGGIQLGNGVRTVGTQ 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               S A    +       +       +    ++      +   + E      +   L  
Sbjct: 61  KLMRSGAYQNTQQATDLAIMGGGFFQIEMPDGSTAYTRNGQFHRNSEGMMVTAAGLPLVP 120

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +      +             +  +A+ +   +++ +   
Sbjct: 121 NIEIPENALSFTVGKDGIVNITMPGEAEPQEIGQLTLVNFT 161


>gi|116331368|ref|YP_801086.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116125057|gb|ABJ76328.1| Endoflagellar distal basal body rod protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 264

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                  G F              G  +         SN   L     + +  + N   +
Sbjct: 94  MAITGEMGFFKIQMPDGSFAFSRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 153

Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +   ++      D          +        L    +N   + E   S           
Sbjct: 154 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 211

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            F ++ + +     V + EE+  +I  +++Y  ++K I  +D ML T +   +
Sbjct: 212 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 264



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 29/153 (18%), Gaps = 26/153 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------P 47
               A            +I  N+ N +   + +                          P
Sbjct: 3   SLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSEIP 62

Query: 48  ENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             V V    R+             A  + +      +      +M        +      
Sbjct: 63  TGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAFSRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
              +          +  +L   +I     ++  
Sbjct: 118 GSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 150


>gi|109899400|ref|YP_662655.1| flagellar basal body rod protein FlgG [Pseudoalteromonas atlantica
           T6c]
 gi|109701681|gb|ABG41601.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas atlantica
           T6c]
          Length = 262

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 69/213 (32%), Gaps = 3/213 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+  A  ++   ++    +++    +            A +       F      D
Sbjct: 50  NQPGGRSSADTELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    T+    Q  +  +      +++         ++   ++       +  +
Sbjct: 110 GSIAYTRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +    +        + +    T  VN+
Sbjct: 170 VLGQISLSDFVNMTGLQPIGQNL--YVETATSGAPIQGVPGLEGLGTVVQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            EEL  LI+ ++ Y +++K+I   D ML  +++
Sbjct: 228 TEELVNLIESQRLYEMNSKVISAVDSMLGQVIQ 260



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 54/208 (25%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49
           +      ++   + A    A I  N+ NA    + +   +           P        
Sbjct: 1   MHPALWISKTGLDAAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  K      +    +A+      + F  +++         +   
Sbjct: 61  ELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQ------PDGSIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ-KIRADADKEIELEI 160
               +   + E          L +  I   E+  Q   +   EV   IR  AD ++  +I
Sbjct: 115 TRNGQFTLNDEGQIVTPGAGFLLQPNITVPEDAQQITISQDGEVSASIRGQADPQVLGQI 174

Query: 161 ---SNLRRFLSELTVVNDAIKFKTASKH 185
                +     +    N  ++  T+   
Sbjct: 175 SLSDFVNMTGLQPIGQNLYVETATSGAP 202


>gi|769850|gb|AAA91361.1| flagellar distal rod protein [Borrelia burgdorferi N40]
          Length = 372

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/328 (8%), Positives = 71/328 (21%), Gaps = 21/328 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +   N   +   +  NI N +   + +                 R  +   
Sbjct: 1   MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60

Query: 62  ------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                       +          A    +                   N           
Sbjct: 61  GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
             + +  N +  +  +  +    E  +  NT++     I    DKE      N+    + 
Sbjct: 121 DSDRHLVNPANGMRIQGWMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNITFACNL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
              +   +  + AS  D        +  L      + +  +    +       + T L  
Sbjct: 181 DKRL--PLIQEGASPADIARGTWVVNKSLYDSFGNVSVLELRVVKDLNTPNLWNATVLIN 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA------LLQIRDSVV 283
                      ++    +  N        +     +    G           + ++   V
Sbjct: 239 GEQNSNFTLGFDNEGALASLNGQPGQKGDILQIPITFNVLGANVGEVGEQQTVNLKLGTV 298

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNS 311
             + + + + A         +D      
Sbjct: 299 GSYTDSITQFADSSSTKAIIQDGYGMGY 326


>gi|45657204|ref|YP_001290.1| flagellar basal body rod protein FlgG [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600442|gb|AAS69927.1| FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 265

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                  G F              G  +         SN   L     + +  + N   +
Sbjct: 95  MAITGEMGFFKIQMPDGSFAFTRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 154

Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +   ++      D          +        L    +N   + E   S           
Sbjct: 155 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 212

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            F ++ + +     V + EE+  +I  +++Y  ++K I  +D ML T +   +
Sbjct: 213 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 265



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/156 (7%), Positives = 31/156 (19%), Gaps = 26/156 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A            +I  N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60

Query: 47  --PENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V V    R+             A  + +      +      +M        +   
Sbjct: 61  EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                 +          +  +L   +I     ++  
Sbjct: 116 TRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 151


>gi|16760055|ref|NP_455672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764535|ref|NP_460150.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142174|ref|NP_805516.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413834|ref|YP_150909.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179696|ref|YP_216113.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161614598|ref|YP_001588563.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553033|ref|ZP_02346783.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994043|ref|ZP_02575135.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234105|ref|ZP_02659163.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237261|ref|ZP_02662319.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244778|ref|ZP_02669710.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264028|ref|ZP_02686001.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467131|ref|ZP_02700973.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822622|ref|ZP_02834622.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446556|ref|YP_002040433.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450313|ref|YP_002045178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472223|ref|ZP_03078207.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734396|ref|YP_002114178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251031|ref|YP_002146864.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262058|ref|ZP_03162132.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362757|ref|YP_002142394.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200390304|ref|ZP_03216915.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207857313|ref|YP_002243964.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213424682|ref|ZP_03357447.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582039|ref|ZP_03363865.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213613179|ref|ZP_03371005.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648928|ref|ZP_03378981.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865503|ref|ZP_03387622.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584317|ref|YP_002638115.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911001|ref|ZP_04654838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289828578|ref|ZP_06546403.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|60392289|sp|P0A1J3|FLGG_SALTY RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|60392290|sp|P0A1J4|FLGG_SALTI RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|25298926|pir||AD0640 flagellar basal-body rod protein FlgG (distal rod protein)
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|47677|emb|CAA36314.1| flgG protein product (AA 1-260) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419696|gb|AAL20109.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502349|emb|CAD08303.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137804|gb|AAO69365.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128091|gb|AAV77597.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62127329|gb|AAX65032.1| flagellar biosynthesis, cell-distal portion of basal-body rod
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161363962|gb|ABX67730.1| hypothetical protein SPAB_02348 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405219|gb|ACF65441.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408617|gb|ACF68836.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458587|gb|EDX47426.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194709898|gb|ACF89119.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630467|gb|EDX49093.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094234|emb|CAR59739.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197214734|gb|ACH52131.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240313|gb|EDY22933.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289797|gb|EDY29158.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199602749|gb|EDZ01295.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322431|gb|EDZ10270.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328014|gb|EDZ14778.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331903|gb|EDZ18667.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336447|gb|EDZ23211.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341038|gb|EDZ27802.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347402|gb|EDZ34033.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709116|emb|CAR33449.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224468844|gb|ACN46674.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246390|emb|CBG24199.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267992953|gb|ACY87838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157720|emb|CBW17212.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312912166|dbj|BAJ36140.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320086381|emb|CBY96154.1| Flagellar basal-body rod protein flgG Distal rod protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223797|gb|EFX48860.1| Flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616549|gb|EFY13458.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620510|gb|EFY17374.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622504|gb|EFY19349.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629655|gb|EFY26430.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632625|gb|EFY29371.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636880|gb|EFY33583.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641582|gb|EFY38220.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644072|gb|EFY40618.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650028|gb|EFY46446.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653953|gb|EFY50276.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658485|gb|EFY54747.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663343|gb|EFY59545.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670077|gb|EFY66217.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674859|gb|EFY70950.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676671|gb|EFY72738.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682593|gb|EFY78612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686654|gb|EFY82633.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714166|gb|EFZ05737.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129449|gb|ADX16879.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195768|gb|EFZ80944.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198340|gb|EFZ83444.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323209179|gb|EFZ94116.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209683|gb|EFZ94612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217861|gb|EGA02576.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222149|gb|EGA06533.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224921|gb|EGA09179.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229663|gb|EGA13786.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232888|gb|EGA16984.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240623|gb|EGA24665.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242937|gb|EGA26958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323250254|gb|EGA34143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252629|gb|EGA36467.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258843|gb|EGA42496.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261032|gb|EGA44625.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266941|gb|EGA50426.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269982|gb|EGA53431.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332988070|gb|AEF07053.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 260

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +          +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  I+ +++   +
Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202


>gi|150019072|ref|YP_001311326.1| hypothetical protein Cbei_4260 [Clostridium beijerinckii NCIMB
           8052]
 gi|149905537|gb|ABR36370.1| protein of unknown function DUF1078 domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 363

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 74/257 (28%), Gaps = 22/257 (8%)

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP-IFQNQLDEMARVLIGSFSEK 304
              ++ I  +    + +  +    G+I   L  RD  +   +Q  L       +  +   
Sbjct: 107 GDLNSGIGANQSTGAPDTAATDATGEISETLFTRDGNLTLDYQGNLLTADGHRVMGYYLT 166

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                   +       D   ++ N                   P  + D  ++S      
Sbjct: 167 ASKNDGGTDNAKSLTYDSTNNVINANYVNADSKQLTVSDSTMRPLVIPDSVTISGTPGAA 226

Query: 365 VK--------NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS--------- 407
                      +     +     D          +A       L +   N          
Sbjct: 227 DAVTQPVKKFEIGKDGIITAVLGDGKRAAIGQIAMASFKNPEGLTDLGGNMCVNSSNSGP 286

Query: 408 ----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                G ++ + S S      +Q  F  + +       V+L E+ + +I   +S+  ++K
Sbjct: 287 IVYKTGKVDTSTSSSTTTATGNQGGFGSLIQGALEGSNVDLTEQFTDMITATRSFQAASK 346

Query: 464 LIMFTDKMLQTLLEGVK 480
           +I   D++LQT+   ++
Sbjct: 347 MITTGDEILQTITGLMR 363



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/307 (8%), Positives = 61/307 (19%), Gaps = 16/307 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L       +       +   I  NI N     +                          
Sbjct: 1   MLRCMYSGISGMKVNQTKLDVIGNNIANVGTTAFKSSSARFKDMLY------------QN 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSED 121
             +     S   G         A    ++      N+ +   S  +    + Y      D
Sbjct: 49  ASEATAPTSVLGGTNAKQIGLGAQVSSINKVMGQGNALSTGRSLDVCIDGDGYLVVAKGD 108

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +      + +        T A                               +  + +  
Sbjct: 109 LNSGIGANQSTGAPDTAATDATGEISETLFTRDGNLTLDYQGNLLT---ADGHRVMGYYL 165

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            +  +     + + +     + +I  + +  ++  + V  S    L       I+     
Sbjct: 166 TASKNDGGTDNAKSLTYDSTNNVINANYVNADSKQLTVSDSTMRPLVIPDSVTISGTPGA 225

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           +  VT       I    + +       +  I  +            +    M      S 
Sbjct: 226 ADAVTQPVKKFEIGKDGIITAVLGDGKRAAIGQIAMASFKNPEGLTDLGGNMCVNSSNSG 285

Query: 302 SEKDPIA 308
                  
Sbjct: 286 PIVYKTG 292


>gi|218549194|ref|YP_002382985.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ATCC
           35469]
 gi|218356735|emb|CAQ89363.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia fergusonii ATCC 35469]
 gi|324113873|gb|EGC07847.1| flagellar basal-body rod protein FlgG [Escherichia fergusonii B253]
 gi|325497614|gb|EGC95473.1| flagellar basal body rod protein FlgG [Escherichia fergusonii
           ECD227]
          Length = 260

 Score = 73.1 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YVETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 46/205 (22%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +          +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  ++ +++   +
Sbjct: 178 FMNDTGLESIGENLYVETQSSGAPN 202


>gi|289548898|ref|YP_003473886.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM
           14484]
 gi|289182515|gb|ADC89759.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM
           14484]
          Length = 262

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/216 (6%), Positives = 48/216 (22%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      + +  +        I  N+ N +   + +                        
Sbjct: 1   MFRALWTSASGMSAQQTNLDVISHNMANVNTVGFKKMRPTFQDLLYQTVRDPGAPTSPTT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P    +      +          L    + +        F  +               
Sbjct: 61  RAPSGFQIGLGVYISDTYGIFTQGNLFQTGNQLDLAIQGDGFFKVV------LPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN--FNTSAREVQKIRADADKEIELE 159
               + R   +    N     L   +   A+ +  +   + +   +++     ++   +E
Sbjct: 115 TRNGQFRLDADGRIVNPDGYPLDPEITVPADAISVSIGPDGTVSVLRQGATTVEEIGRIE 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++          + N+      AS     D    + 
Sbjct: 175 LAKFVNPAGLRRIGNNLFIQTDASGEPIVDNPGNQG 210



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 3/126 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +   L    +V    +       G   ++     +  +      +A       L     N
Sbjct: 132 DGYPLDPEITVPADAISVSIGPDGTVSVLRQGATTV-EEIGRIELAKFVNPAGLRRIGNN 190

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +++ + S    +          + + Y  +  VN+ EE+  LI  ++++  ++K IM
Sbjct: 191 L--FIQTDASGEPIVDNPGNQGLGTLLQGYLESSNVNIVEEMVNLIIAQRAFEFNSKGIM 248

Query: 467 FTDKML 472
             D ML
Sbjct: 249 AADDML 254


>gi|238785495|ref|ZP_04629478.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC
           43970]
 gi|238713597|gb|EEQ05626.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC
           43970]
          Length = 260

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D  N   +  S  +  N Q  +   F             ++ 
Sbjct: 91  NTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTASGFPVQPAITIPANALSMT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +     +  +      +     N  L     N   + E   S + +      
Sbjct: 151 VGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESMGENL--YQETASSGAPNDTTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/208 (8%), Positives = 45/208 (21%), Gaps = 24/208 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLAKTDNTKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +          S   +   +   A  +   V      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTASGFPVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHD 189
            +     E    N   +  ++   +   
Sbjct: 178 FINNSGLESMGENLYQETASSGAPNDTT 205


>gi|253996317|ref|YP_003048381.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8]
 gi|253982996|gb|ACT47854.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8]
          Length = 260

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 6/184 (3%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354
           I +         + +          +   D            V+ Q     S+   ++  
Sbjct: 80  IFTQGNIQQTGNDKDVAIQGAGFFQVLLPDGTTAYTRDGAFQVDFQGQLVTSSGFSVQPP 139

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +V            G   +      +  +      +A       L     N   ++E  
Sbjct: 140 ITVPSNAQTLTVGRDGTVSVTLAGSTAVTQ-IGQLQLATFINPAGLQGNGENL--YVETA 196

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S + + +         +++ Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ 
Sbjct: 197 ASGTANANTPGTNGAGLLTQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQMLQK 256

Query: 475 LLEG 478
           L + 
Sbjct: 257 LTQM 260



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/214 (6%), Positives = 40/214 (18%), Gaps = 36/214 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQTSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             +    +          F  +            
Sbjct: 61  QLPSGLQLGTGVRPVATERI---FTQGNIQQTGNDKDVAIQGAGFFQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155
           +        +   +      S   +   +   +           T +  +    A     
Sbjct: 112 TAYTRDGAFQVDFQGQLVTSSGFSVQPPITVPSNAQTLTVGRDGTVSVTLAGSTAVTQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                + +     +    N  ++   +   +A+ 
Sbjct: 172 QLQLATFINPAGLQGNGENLYVETAASGTANANT 205


>gi|323700468|ref|ZP_08112380.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. ND132]
 gi|323460400|gb|EGB16265.1| flagellar hook-associated protein FlgK [Desulfovibrio desulfuricans
           ND132]
          Length = 669

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/432 (12%), Positives = 132/432 (30%), Gaps = 38/432 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
           +  ++N  +    NA     +   NI NAD   Y R       S               +
Sbjct: 2   INNLYNIGKTSLQNAQVSVNNASNNIANADTTGYQRTTVEYDTSSSITINGLTVGTGADI 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            + +SE     +       + +  Q     +    + +   +  +   +  + +  D+  
Sbjct: 62  TSIQSEWDKFVEAQYLDAVADLATQSSALDYLDQLDSLL--NQSDGGLSDVMEEFFDAWN 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               +       + ++   E +V   N+++  +  +    + +I+ ++    + +S++  
Sbjct: 120 ELVTDPDSLSAREDLLGTTETLVYALNSTSSTLDTMVETINADIQDQVDEANQLISDIAE 179

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            N AI           D    RD +++++  +IG+  + +++N + + T +G +L     
Sbjct: 180 ANAAIAANPDDNQAVSD----RDQMIRELDALIGVDVLYQSDNTVTILTEEGYSL----- 230

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                        T   N ++ D  V  S    +   G +    +  + ++  F +   +
Sbjct: 231 ----------VDGTDTHNLVYADIGVTQSLVRGSDYDGTLNFSGESGEELLIEFVSSGPD 280

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                  S         +      L+ ADG  +        +            +   + 
Sbjct: 281 GTAQFKVSTDGGSTWLTDDNGDVMLYTADGEDNSVEIEGITLWFEDGTADHAEGDRYTVM 340

Query: 353 DG-------GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                    G    K +  + + +G          S    F        +T   L + A 
Sbjct: 341 AKSGLYWESGDGGLKNITPLTDDSGDNVSGRTSSGSLAGLFTVRDDTVYDTIAGLDDLAE 400

Query: 406 NSIGWLEKNRSD 417
           + I  +    S 
Sbjct: 401 SIIWEVNSAHSQ 412



 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 91/315 (28%), Gaps = 1/315 (0%)

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
                     D +  +T+S   A  F  + D +   I+ +  ++  +    +       G
Sbjct: 356 NITPLTDDSGDNVSGRTSSGSLAGLFTVRDDTVYDTIAGLDDLAESIIWEVNSAHSQGAG 415

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
                ++    + +  ++    S  +          +              +   D    
Sbjct: 416 LEHHTSLTASYSVDDSSAMLSNSGLHYEDNIEAGELTLITYDADGNVSTTAILSIDPATD 475

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +   ++     G  +          +       +   D    L      T       
Sbjct: 476 SLDDVAADINAAFAGELTATITDGQLILSSGTDMEFEVAGDTSGLLAALGLNTYFTGTD- 534

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                      + +      V    G     ++   S         V    T  TL    
Sbjct: 535 AGTIGIDDYVTTNTSHLNTGVVGEDGLTSSGSNEVASIMAELGEQTVTVGGTETTLTSAL 594

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            + +  +    S +      +Q   +++ E  ++T  VN+ EEL  L K +Q+Y  + ++
Sbjct: 595 ASLVASVGAAASAAELQQTYAQTSVDYLYEQQASTSEVNVDEELIELTKYQQAYEAAAQI 654

Query: 465 IMFTDKMLQTLLEGV 479
           I  T +M++T+L+ V
Sbjct: 655 ISVTREMMETVLDMV 669


>gi|34558104|ref|NP_907919.1| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM
           1740]
 gi|34483822|emb|CAE10819.1| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella
           succinogenes]
          Length = 263

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 6/186 (3%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YRSNPSFLRDG 354
           I S         N +          I+  D       +     + +     S+   L   
Sbjct: 80  IFSQGNFKETGNNLDIAITGNGFFQIQLPDGTTAYTRNGAFKPDDEGNIVNSDGYRLIPE 139

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            ++ +        + G   ++       N       +A       L     N   +L  N
Sbjct: 140 ITIPEDATQINIGVDGTVSVLQGNQTEVN-TIGQIEIATFINPAGLHSLGDNL--YLNTN 196

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S    +       F  + + +     V L EE++ LI  +++Y  ++K I   D MLQT
Sbjct: 197 ASGDPIVDTPGLNGFGQLRQGFVELSNVKLVEEMTDLITGQRAYEANSKSIQTADSMLQT 256

Query: 475 LLEGVK 480
           +    +
Sbjct: 257 VNSLKR 262



 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 52/210 (24%), Gaps = 29/210 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q      NI N +   Y ++                       
Sbjct: 1   MMRALYTATTGMMGQQLQIDVTSNNIANVNTIGYKKQRAEFADLFYQVMEYAGSSTSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K           + +        F  ++           +  
Sbjct: 61  LSPTGIEVGLGVRPTAITKIFSQGNFKETGNNLDIAITGNGFFQIQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   E    N     L    T+ ++A ++    + +   +Q  + + +   ++E
Sbjct: 115 TRNGAFKPDDEGNIVNSDGYRLIPEITIPEDATQINIGVDGTVSVLQGNQTEVNTIGQIE 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           I+         ++ ++      AS     D
Sbjct: 175 IATFINPAGLHSLGDNLYLNTNASGDPIVD 204


>gi|88811803|ref|ZP_01127057.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231]
 gi|88791194|gb|EAR22307.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231]
          Length = 261

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 47/186 (25%), Gaps = 2/186 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              ++       +   A +       F      D      +  S  I    Q  +     
Sbjct: 76  ATQKMFTQGNIVQTGNALDLAINGRGFFEILQPDGTLAYTRDGSFQIDDQGQVVTADGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       +V         +               +        L    RN   ++
Sbjct: 136 LQPAINIPPNAQSVTIGTDGTVSVQLPGSPAPTQVGNLRLTDFINPAGLKPIGRNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +   S +             +      +  VN+ EEL  +I+ ++ +  + + I   D+M
Sbjct: 194 QTGASGAPQPGTPGLNGLGLVQAGALESSNVNIAEELVNMIETQRGFETNTRAIQTADQM 253

Query: 472 LQTLLE 477
           LQ +  
Sbjct: 254 LQFITN 259



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/212 (5%), Positives = 40/212 (18%), Gaps = 36/212 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + +++  N+ N +   + +                        
Sbjct: 1   MNPALWVAKTGLDAQQTRMSTVANNLANVNTTGFKKDRAKFEDLVYQTVRQAGGQSSQNN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +          +    +A+      + F  + +          
Sbjct: 61  RLPSGLMLGTGVRVAATQKM---FTQGNIVQTGNALDLAINGRGFFEILQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155
                    +   +          L   +               T + ++    A     
Sbjct: 112 LAYTRDGSFQIDDQGQVVTADGLPLQPAINIPPNAQSVTIGTDGTVSVQLPGSPAPTQVG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
                  +     +    N  ++   +     
Sbjct: 172 NLRLTDFINPAGLKPIGRNLFVQTGASGAPQP 203


>gi|323204838|gb|EFZ89832.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 255

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 77  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 136

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 137 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 194

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 195 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 254

Query: 478 G 478
            
Sbjct: 255 L 255



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/197 (8%), Positives = 41/197 (20%), Gaps = 24/197 (12%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------TISPENVTV 52
           +   +        I  N+ N     + R+  +                   T  P  + +
Sbjct: 4   KTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQI 63

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            T       +  + LH+  +              +           S        +    
Sbjct: 64  GTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQN 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                     +   +   A  +          +   Q   A          + +     E
Sbjct: 121 GQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLE 180

Query: 170 LTVVNDAIKFKTASKHD 186
               N  I+ +++   +
Sbjct: 181 SIGENLYIETQSSGAPN 197


>gi|238764394|ref|ZP_04625344.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC
           33638]
 gi|238697420|gb|EEP90187.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC
           33638]
          Length = 260

 Score = 73.1 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D  N   +  S  +  N Q  +   F              + 
Sbjct: 91  NTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTASGFQVQPAITIPANALKMT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +     +  +      +     N  L     N   + E   S + +      
Sbjct: 151 IGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSGAPNETTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 45/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +          S   +   +   A  +   +      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTASGFQVQPAITIPANALKMTIGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202


>gi|116327820|ref|YP_797540.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116120564|gb|ABJ78607.1| Endoflagellar distal basal body rod protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 265

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 3/173 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
                  G F              G  +         SN   L     + +  + N   +
Sbjct: 95  MAITGEMGFFKIQMPDGSFAFSRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNTLMI 154

Query: 369 AGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +   ++      D          +        L    +N   + E   S           
Sbjct: 155 SEQGEVTVKVGADIRPIVIGQVELYRFVNPAGLQAIGKNL--FQETVASGPEIPGTPGME 212

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            F ++ + +     V + EE+  +I  +++Y  ++K I  +D ML T +   +
Sbjct: 213 GFGNVLQGFLEMSNVKIVEEMVAMIVAQRAYESNSKAIQTSDNMLSTAISLKR 265



 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/156 (7%), Positives = 31/156 (19%), Gaps = 26/156 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A            +I  N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60

Query: 47  --PENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V V    R+             A  + +      +      +M        +   
Sbjct: 61  EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQM-----PDGSFAF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                 +          +  +L   +I     ++  
Sbjct: 116 SRDGSFKIDSNQQVVTSNGYLLEPPLILPEGAILNT 151


>gi|238799109|ref|ZP_04642565.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC
           43969]
 gi|238717056|gb|EEQ08916.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC
           43969]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D  N   +  S  +  N Q  ++  F             ++ 
Sbjct: 91  NTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQVQPAITVPANALSMT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +     +  +      +     N  L     N   + E   S + +      
Sbjct: 151 VGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESIGENL--YQETASSGAPNETTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTSGGFQVQPAITVPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESIGENLYQETASSGAPN 202


>gi|299066542|emb|CBJ37732.1| Putative flagellar hook protein (flgE) [Ralstonia solanacearum
           CMR15]
          Length = 395

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/399 (8%), Positives = 91/399 (22%), Gaps = 8/399 (2%)

Query: 80  LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139
           L S       +   +      ++  + +       S     D+       +A+      +
Sbjct: 2   LDSIYIAMTGLHGYEEALRVISNDTTNMNTPGFKGSALQFSDLFYTNSGQSAQGGGHTAS 61

Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
                +  +    + +     +           V    +     K         RD   +
Sbjct: 62  QLGFGLNTVGTLLNFKQGQMQTTGNDL-----DVAVDGQGLFVLKAADGSLRYTRDGQFK 116

Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV 259
             ++   IS+        +    +   +     +    +  ++ T +           V 
Sbjct: 117 FNTDGNLISSTTGEQAMALDSAGNLAPVSIAALKTSAAKPTSTVTFSGNLPSTSTGQTVG 176

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
           S             +      S                +GS +        +     + +
Sbjct: 177 SVTVIDTAGGTHTLSAKLAPVSGKSGTWTVTLLDGTTTVGSGTIAFINGKPAPANATVSL 236

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                   +            +       +      +                 L+  Y 
Sbjct: 237 TYTPSGQSSMPLTLDFSNNVTSFDSGGQSTLAMASQNGYAAGNLTKTTFDSTGTLVLTYA 296

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +          +   N+   +     N     +     + +  +     F  +       
Sbjct: 297 NGQTVKGAQLALGRFNSPDAVEAVGNN---EFKVVNGQAWETGVAGTGAFGTLHSGMVEN 353

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             V+L +E S L+ +++ Y  S++++   + ML  L   
Sbjct: 354 SNVDLSQEFSNLVIMQRGYQASSQVVSTANDMLSELFSM 392


>gi|323175233|gb|EFZ60846.1| flagellar basal-body rod protein flgG domain protein [Escherichia
           coli LT-68]
          Length = 202

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 24  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 83

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 84  IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 141

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 142 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 201

Query: 478 G 478
            
Sbjct: 202 L 202


>gi|238794000|ref|ZP_04637618.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC
           29909]
 gi|238726632|gb|EEQ18168.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC
           29909]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D  N   +  S  +  N Q  ++  F             ++ 
Sbjct: 91  NTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQVQPAITIPANALSMT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +     +  +      +     N  L     N   + E   S + +      
Sbjct: 151 VGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESIGENL--YQETASSGAPNETTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTSGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESIGENLYQETASSGAPN 202


>gi|317406199|gb|EFV86448.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans
           C54]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +   ++   +V    L       G   +        N       +A       L     N
Sbjct: 132 SGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQIATFINPTGLQSVGEN 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +LE + S   +L            ++Y  T  VN+ EEL  +I  +++Y +++K + 
Sbjct: 192 L--YLETDASGPANLLQPGVDGAGTFMQNYVETSNVNVAEELVNMITTQRAYEMNSKAVK 249

Query: 467 FTDKMLQTLLEG 478
            +D+ML  L + 
Sbjct: 250 TSDEMLARLTQL 261



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 56/246 (22%), Gaps = 35/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R   +                    
Sbjct: 1   MMRSLWIAKTGLEGQQTSMDVISNNLANVATNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        V      +       L+     +      + F  ++           
Sbjct: 61  QLPSGLQLGTGARVAATERIH---TTGGLNNTGGELDVAINGRGFLQVE------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   L+         +S  ++     V DNA  +    +      Q   A  + +I
Sbjct: 112 QAYTRDGALQRDQNGQLTTVSGYVIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQI 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
                      + L  V + +  +T +   A+      D     +   +  S +      
Sbjct: 172 GQLQIATFINPTGLQSVGENLYLETDASGPANLLQPGVDGAGTFMQNYVETSNVNVAEEL 231

Query: 217 MVVYTS 222
           + + T+
Sbjct: 232 VNMITT 237


>gi|204930805|ref|ZP_03221678.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320264|gb|EDZ05468.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVILPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVILPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +          +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  I+ +++   +
Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202


>gi|77457729|ref|YP_347234.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens
           Pf0-1]
 gi|77381732|gb|ABA73245.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F      D      +  +  +  N Q  +   F  
Sbjct: 77  TQKNFTAGSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTFHLDSNGQIVNASGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAIVIPNNAQTFTVGRDGTVSITVAGNPAAQVIGNLQTADFINPAGLQAVGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    ++   T  V+  EE+  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMITTQRAYEMNSKVISTADQML 254



 Score = 59.7 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 52/242 (21%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +       +I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T         N     L      +      + F  + +          +  
Sbjct: 61  ELPSGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDMAIDGRGFFQILQ------PDGTTSY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                          N S   L   ++  +NA+      + +          A     L+
Sbjct: 115 TRDGTFHLDSNGQIVNASGFALEPAIVIPNNAQTFTVGRDGTVSITVAGNPAAQVIGNLQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++         V N+      AS                  + +   +         ++
Sbjct: 175 TADFINPAGLQAVGNNLFLETAASGAPQVGTPGLNGFGTTLQNTLETSNVSTVEEMVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 TT 236


>gi|254516991|ref|ZP_05129049.1| flagellar basal-body rod protein FlgG [gamma proteobacterium
           NOR5-3]
 gi|219674496|gb|EED30864.1| flagellar basal-body rod protein FlgG [gamma proteobacterium
           NOR5-3]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  K   A +       F    + D +    +  S  I       ++  +      
Sbjct: 81  FTQGNLTKTDSALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGIVVTSAGYQVQPPI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +V         +     + +       +        L     N   +LE   S
Sbjct: 141 TVPQDALSVTIANDGTVSVQQPGTAASTQIGLVQLTDFINPSGLQARGENL--FLESGAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +             +S+ Y  +  VN+ EEL  +I+ +++Y ++++ I   D+MLQ + 
Sbjct: 199 GAPQPGNPGLNGLGTLSQGYVESSNVNVVEELVNMIETQRAYEMNSRAISTADQMLQYIS 258

Query: 477 E 477
            
Sbjct: 259 N 259



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/222 (7%), Positives = 45/222 (20%), Gaps = 27/222 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +    + ++I  N+ N     + R   +                    
Sbjct: 1   MNQSLWISKTGLDAQQTKMSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    SA+      + F  +           N   
Sbjct: 61  LLPSGLQIGTGTRVVATEKLFTQGNLTKTDSALDIAIQGRGFFEIL------LPDGNQAF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + + +      +   +   +    + +            +    A       + 
Sbjct: 115 TRDGSFQINDQGIVVTSAGYQVQPPITVPQDALSVTIANDGTVSVQQPGTAASTQIGLVQ 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                            F  +    A    +     L  +S+
Sbjct: 175 LTDFINPSGLQARGENLFLESGASGAPQPGNPGLNGLGTLSQ 216


>gi|198244335|ref|YP_002215958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938851|gb|ACH76184.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623706|gb|EGE30051.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 2/215 (0%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
               P  +      +   +      +     R+       +   + +       F    +
Sbjct: 48  TIRQPGAQSSGQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVML 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
            D  +   +  S  +  N Q  +   F             ++         +     +  
Sbjct: 108 PDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAP 167

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                  +     +  L     N   ++E   S + +           + + Y  T  VN
Sbjct: 168 VQVGQLNLTTFMNDTGLESIGENL--YIETQSSGAPNESTPGLNGAGLLYQGYVETSNVN 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + EEL  +I+V+++Y I++K +  TD+MLQ L + 
Sbjct: 226 VAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSGQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +          +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  I+ +++   +
Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202


>gi|325274797|ref|ZP_08140825.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51]
 gi|324100065|gb|EGB97883.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +  +    +      +       F      D      +  +  +  + Q  +   +  
Sbjct: 77  TQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTANGYAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAIVVPNDAQTFTVGTDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/249 (7%), Positives = 52/249 (20%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQVKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100
             P  + V T         +     L    + +      + F  + +      +  + + 
Sbjct: 61  ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +   Y+   +  +                 T+A           +  +   
Sbjct: 121 HLNSDGQIVTANGYALEPAIVVPNDAQTFTVGTDGTVSITTAGNPAAQVIGNIQTADFIN 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
               + + +   +  A            +          + S +  +  +V        Y
Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAY 240

Query: 221 TSDGTTLFE 229
             +   +  
Sbjct: 241 EMNSKVIST 249


>gi|238751764|ref|ZP_04613252.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380]
 gi|238710035|gb|EEQ02265.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D  N   +  S  +  N Q  ++  F             ++    
Sbjct: 94  DIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTSGGFQVQPAITIPANALSMTVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +  +      +     N  L     N   + E   S + +         
Sbjct: 154 DGIVSVTLQGQTATQQVGQLTLTTFINNSGLESMGENL--YQETASSGAPNETTPGLNGG 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTSGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESMGENLYQETASSGAPN 202


>gi|87307400|ref|ZP_01089545.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645]
 gi|87290140|gb|EAQ82029.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645]
          Length = 929

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/438 (9%), Positives = 106/438 (24%), Gaps = 24/438 (5%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
            V    S+      L+    A ++ +        S     +  R  L+    + +  ++ 
Sbjct: 494 NVYRNLSTDSASYYLVTELGAGEDFVDDRSDAEISDLTNSANRRIDLDGPKVDSNTLLVD 553

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
               D           +             E    +++       +  +  ++  + +  
Sbjct: 554 VVKRDGLNFESMFSEGTLTFKGSKGDRTLNEKTFTVTDTTIVQDLIEFLEASLGIQPSVN 613

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
            +++      + +  +  ++     I       VV  +      +        +  +   
Sbjct: 614 GNSNPIPGSENNIADETGDLSQGIYITTEGRIRVVSNNGVDNGVDIGLSSFQLDNGSGVV 673

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                N   I   V  S     +    +   + +R + V   +N  + + R    S    
Sbjct: 674 QNPNLNFGVIQEAVGESAVADVIVYDSLGVPMNVRVTTVLESRNGTNTVYRWFADSPDND 733

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY-------------------- 344
               G+      + +  G+   D       S+   V                        
Sbjct: 734 GDTIGDESEAAKISVGTGLIYFDGDGNYIGSDNNTVTINRRNIPSESPLEFDLNFDQLSG 793

Query: 345 --RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 +        S     N   ++    +   +    +++     +A       L +
Sbjct: 794 LAADKATLNASRQDGSGTGKLNSFIISEDGIIRGVFSSGVDRDLGMIQLARFANPSGLEQ 853

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N         S         +     I          ++   L  LI     Y  S+
Sbjct: 854 RGNNLFA--AGVNSGLPVQGDAGEEGIGSIIAGAVELSNTDIGGNLIDLILASTQYRGSS 911

Query: 463 KLIMFTDKMLQTLLEGVK 480
           ++I    ++   LL   +
Sbjct: 912 RIITTAQQLFDELLNIRR 929



 Score = 45.0 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 90/391 (23%), Gaps = 48/391 (12%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTT-----------------------ISPENV 50
              A  Q   +  N+ N+    +   D +                              V
Sbjct: 1   MTAAETQIDVLGNNLANSQTVGFKASDALFANQFLQTRGLGSKPSETDGGTNPRQVGLGV 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            V        N     +   S+          F  ++                    + +
Sbjct: 61  MVAEIT---PNFTQGTIEVSSNPSDLAIQGDGFFIVQGN------NGERLYTRNGIFKTN 111

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNF----------NTSAREVQKIRADADKEIELEI 160
             +    +  + +    ID    + +               A+  + +  +       ++
Sbjct: 112 SNNELVTIGGERVLGFGIDENFNIQETQLVPLTIPLGAAAVAKATENVYLEGTLPATGDL 171

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           + + + +    + N AI     S   A                   GI ++V+   +   
Sbjct: 172 ATVAQVIESAILGNSAIPRPDVSGASAIVAETPDDSSSTTDSVSTPGIGSVVQGQTEGAG 231

Query: 220 YTSDGT-----TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
              DGT     T  +    +      N     ++      +   V+              
Sbjct: 232 SVPDGTFDYRFTFSDAALANETQASANITVNVADLGDAIANNNTVTFAGAPQSSSHSQVN 291

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           + +  D     F      M   +    +       ++ N+ G      +   D    +  
Sbjct: 292 MYRSNDGGATYFLVSSTAMGAAVEDVAAAPTATQLSAANINGTGSGGVLGGGDVYEYRFA 351

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                 N    S+   +   G+ +    ++V
Sbjct: 352 FVDADGNETVASDGQQITVDGAPADGNGYSV 382


>gi|294679031|ref|YP_003579646.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB
           1003]
 gi|294477851|gb|ADE87239.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB
           1003]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 61/218 (27%), Gaps = 8/218 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                 +      +   D  +     Q+    R    S +       ++     L I   
Sbjct: 41  ADLMYQQATRPGTITANDGTIVPAGVQIGLGVRSTAVSITLAQGPLASTGGDLDLAIDGY 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                       + T     +  ++   +   G      +    +             ++
Sbjct: 101 GFLEVTLPSGASAYTRDGGLKRSADGQIVTSDGYPVVPGITLPDDATTISINAAGEVYAY 160

Query: 383 NKNFIF------DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
             N +         +AG      L     N   +LE   S +  +          I + Y
Sbjct: 161 FTNQVQPQLLGQITLAGFTNEKGLEAIGSNL--FLETEASGAPTVAAPGTDGLGVIKQGY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
                V+   E++ LIK ++ Y ++ K+I   D+MLQ 
Sbjct: 219 LEESSVDAVREITELIKAQRGYEMNAKVITAADEMLQA 256



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 34/178 (19%), Gaps = 28/178 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALQIAATGMSAQQMRVEVISNNLANMSTTGYNARRAEFADLMYQQATRPGTITANDGTIV 62

Query: 47  PENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +            +    L +    +        F  +            S    
Sbjct: 63  PAGVQIGLGVRSTAVSITLAQGPLASTGGDLDLAIDGYGFLEV------TLPSGASAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              L+ S +          +   +    +    + N +             ++  +I+
Sbjct: 117 DGGLKRSADGQIVTSDGYPVVPGITLPDDATTISINAAGEVYAYFTNQVQPQLLGQIT 174


>gi|119503646|ref|ZP_01625729.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium
           HTCC2080]
 gi|119460708|gb|EAW41800.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium
           HTCC2080]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 53/190 (27%), Gaps = 2/190 (1%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                ++    R+       +     +       F+   + D      +  S  I     
Sbjct: 68  VGTGARVVATERLFTQGNLSQTDNPLDLAIQGRGFVEVLMPDGSQGFTRDGSFQINDQGV 127

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             +   +         +   ++         +               +        L   
Sbjct: 128 MVTAAGYQVQPPITIPQDALSISIAPDGTVSVQQPGTPQATQVGVIQLTDFVNPSGLQAR 187

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   +LE   S +             + + +     VN+ EEL  +I+ +++Y +++K
Sbjct: 188 GENL--FLETGASGAPLPGNPGLNGLGTLQQGFVEGSNVNVVEELVNMIETQRAYEMNSK 245

Query: 464 LIMFTDKMLQ 473
            I   D+MLQ
Sbjct: 246 AISTADQMLQ 255



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 34/153 (22%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + A+I  N+ NA    + R   +                    
Sbjct: 1   MSQSLWIAKTGLDAQQTKMATISNNLANAGTNGFKRGRVIFEDLLYQNVRQVGAQSSQDT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T               L    + +      + F  +           +   
Sbjct: 61  VLPSGLQVGTGARVVATERLFTQGNLSQTDNPLDLAIQGRGFVEVL------MPDGSQGF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                 + + +      +   +   +    + +
Sbjct: 115 TRDGSFQINDQGVMVTAAGYQVQPPITIPQDAL 147


>gi|120554035|ref|YP_958386.1| flagellar basal body rod protein FlgG [Marinobacter aquaeolei VT8]
 gi|120323884|gb|ABM18199.1| flagellar basal-body rod protein FlgG [Marinobacter aquaeolei VT8]
          Length = 262

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 2/185 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F+   + D      +     + VN    +   +L 
Sbjct: 77  TVKQFSQGNLQITEQPLDMAINGRGFLQILLPDGQIAYTRDGQFQLNVNGDVVNPDGYLL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          N+               +   N     +        L     N   + E
Sbjct: 137 EPAINVPNNATNITIGTDGTVTAITDDQAAPVNVGQITLVDFINPQGLQAIGNNL--FKE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +        +    I +       V + EEL  +I  +++Y +++K++   D+ML
Sbjct: 195 TISSGNPIEGQAGLLGLGTIEQGSLEASNVEVVEELVNMITTQRAYEMNSKVVSTADQML 254

Query: 473 QTLLE 477
           Q +  
Sbjct: 255 QFITN 259



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/199 (7%), Positives = 37/199 (18%), Gaps = 36/199 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      ++I  N+ N +   + R   +                    
Sbjct: 1   MNPALWVSKTGLSAQDINMSTISNNLANVNTTGFKRDKAVFQDLLYQINRQPGGLSTQNS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV      K      L      +      + F  +            
Sbjct: 61  ELPSGLQLGTGVRVVG---TVKQFSQGNLQITEQPLDMAINGRGFLQIL------LPDGQ 111

Query: 99  SPTHYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                  + + ++     N              +     +    T         A  +  
Sbjct: 112 IAYTRDGQFQLNVNGDVVNPDGYLLEPAINVPNNATNITIGTDGTVTAITDDQAAPVNVG 171

Query: 156 IELEISNLRRFLSELTVVN 174
               +  +     +    N
Sbjct: 172 QITLVDFINPQGLQAIGNN 190


>gi|224437199|ref|ZP_03658180.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG
           18818]
 gi|313143665|ref|ZP_07805858.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG
           18818]
 gi|313128696|gb|EFR46313.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG
           18818]
          Length = 262

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 72/272 (26%), Gaps = 15/272 (5%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                         D T+          ++K  +         +   G   S    S   
Sbjct: 6   YTATTGMLGQQMQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETTISPTG 65

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                  +++   V P+   ++           +    I GN      L   +       
Sbjct: 66  -------IEVGIGVRPVAVQKMFSQGHPKETENNLDVAITGNGFFQIELPDGNIAYTRAG 118

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 +  +     YR  P      G+       +        +          +   F
Sbjct: 119 SFKLDNNGNVVNAEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNVLGQIEIVNF 178

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
              AG      L     N   ++  N S      +     F  + + +     V L EE+
Sbjct: 179 INPAG------LHSLGDNL--FINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEM 230

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + LI  +++Y  ++K I   D MLQT+    +
Sbjct: 231 TDLITGQRAYEANSKSIQTADSMLQTVNGLKR 262



 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 52/255 (20%), Gaps = 34/255 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q  +   NI N +   Y ++                       
Sbjct: 1   MMRSLYTATTGMLGQQMQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K           + +        F  ++          N   
Sbjct: 61  ISPTGIEVGIGVRPVAVQKMFSQGHPKETENNLDVAITGNGFFQIE------LPDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +        N     L   +         N  T            +  +  +I 
Sbjct: 115 TRAGSFKLDNNGNVVNAEGYRLIPELTIPEGATQINIGTDGTVSVIEGNQTEVNVLGQIE 174

Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            +          L +   +N        +     D   Q      ++S +  +  +    
Sbjct: 175 IVNFINPAGLHSLGDNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLI 234

Query: 215 NDMVVYTSDGTTLFE 229
                Y ++  ++  
Sbjct: 235 TGQRAYEANSKSIQT 249


>gi|115523522|ref|YP_780433.1| flagellar basal body FlaE domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115517469|gb|ABJ05453.1| flagellar basal body FlaE domain protein [Rhodopseudomonas
           palustris BisA53]
          Length = 602

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 72/261 (27%), Gaps = 9/261 (3%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
             G  L       ++           +     +D     +   SA      + +  +   
Sbjct: 349 GTGHVLGSDNQDFLDQSISGGAATAYDGAGGPVDLQFRWAKVDSATLGSPHQDVWNMFYQ 408

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV--PGLFIADGIKDLDNKLCQGISETIC 339
           V P           V +    + +    +          +    K+L +         + 
Sbjct: 409 VSPTATGSAVAWQNVGVDFQFDSNGQMTSPTISKFTLPAVTVSGKNLGDLTLAIGGGGLT 468

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                  N    +   +          +++    ++  Y +  N +     +A  N    
Sbjct: 469 QFADTNGNVQVNQLQQNGFPAGTLKSVSVSNDGRVVGSYSNGRNIDLAEISIATFNGANF 528

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L                 +++           IS S       ++ +E + LI  +Q+Y+
Sbjct: 529 LKRTDGGVF-------EATNESGEALYGKGGTISGSSLEASNTDIADEFTKLIVTQQAYS 581

Query: 460 ISNKLIMFTDKMLQTLLEGVK 480
            + K+I   + M+Q LL  ++
Sbjct: 582 ANTKVITTANTMVQDLLNVMR 602



 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/446 (9%), Positives = 104/446 (23%), Gaps = 21/446 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +      +       S    +I  NI N+    + R D+          V  Q + + 
Sbjct: 1   MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRIDSSFLDLIPQTGVNQQLAGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109
               +  +    ++    +        +                     +          
Sbjct: 61  TFASRSTNTVQGSVSAASVSTFMAINGDGFFVVQKPGSFADNNPIFDGVNRYTRRGDFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   +    ID         N      Q ++   D+      S ++   + 
Sbjct: 121 DKNGYLVNGAGYYVQGVPIDTLTG-----NKVGDVPQVLKFKNDQLPSQATSTIQYRANL 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +        K+    +  +  D  D      +  +  S   +    +    +  T +  
Sbjct: 176 ASYPLTTKHDKSVPGSELLNPADFVDNPRTTSTPAVPYSDNTKTGIAVNSKLTTPTAITG 235

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +  T     + I ++G  ++         G   A     DS V    ++
Sbjct: 236 ATLLSGGTNTDSIATSFGVGDAITVNGTTITFTA----SGGADDATHIPIDSTVTNLLSK 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +  +A  +  + S    I  ++       ++         L    +  I       +   
Sbjct: 292 ITPLAGGVAPTISGTGAITLHTGTASNFQMSSTNTAALAALGFSGTVNIPRLGGGTAGTG 351

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE-YARNSI 408
            +    +            A   D      D   +    D     + +  +   + + S 
Sbjct: 352 HVLGSDNQDFLDQSISGGAATAYDGAGGPVDLQFRWAKVDSATLGSPHQDVWNMFYQVSP 411

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434
                  +  +            ++ 
Sbjct: 412 TATGSAVAWQNVGVDFQFDSNGQMTS 437


>gi|309388846|gb|ADO76726.1| flagellar basal-body rod protein FlgG [Halanaerobium praevalens DSM
           2228]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +           + V        ++  D         +   +       S        
Sbjct: 80  IFTQGNIQNTDSPLDMVIEGDGLFRVQLPDGNFAYTRDGSFKQDSNGNVVTSDGYQLDPG 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            +      +        IN   D  N+      +        L    RN         S 
Sbjct: 140 FQIPQEATEISITSDGTINALVDGENQQLGQIQLYRFANPAGLSSEGRNLYSD--TVASG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                +  +  F  +++ +     V + EE+  +I  +++Y  ++K I  +D+MLQT  +
Sbjct: 198 QAMQGVPGEQGFGTVTQGFLEMSNVKVVEEMVNMIAAQRAYETNSKSIQASDEMLQTANQ 257

Query: 478 GVK 480
             +
Sbjct: 258 LKR 260



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/214 (6%), Positives = 42/214 (19%), Gaps = 27/214 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +++    +    N+       I  N+ N +   + +                        
Sbjct: 1   MISALWTSATGMNSQQTNIDVISNNLANVNTSGFKKSKINFADLIYTQMRQPGTPNAQGA 60

Query: 46  -SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +       S  K      +    S +           ++          N   
Sbjct: 61  EVPTGIEIGHGSKVNSTQKIFTQGNIQNTDSPLDMVIEGDGLFRVQ------LPDGNFAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +              L        E    +  +       +  +  +  ++++ 
Sbjct: 115 TRDGSFKQDSNGNVVTSDGYQLDPGFQIPQEATEISITSDGTINALVDGENQQLGQIQLY 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
                    +   +      AS         ++ 
Sbjct: 175 RFANPAGLSSEGRNLYSDTVASGQAMQGVPGEQG 208


>gi|167034941|ref|YP_001670172.1| flagellar basal body rod protein FlgG [Pseudomonas putida GB-1]
 gi|166861429|gb|ABY99836.1| flagellar basal-body rod protein FlgG [Pseudomonas putida GB-1]
          Length = 261

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +  +    +      +       F      D      +  +  +  + Q  +   +  
Sbjct: 77  TQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVTANGYAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100
             P  + V T         +     L    + +      + F  + +      +  + + 
Sbjct: 61  ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +   Y+   +  +          +      T+A           +  +   
Sbjct: 121 HLNSDGQIVTANGYALEPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
               + + +   +  A            +          + S +  +  +V        Y
Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTQQQTLENSNVSTVEELVNMITTQRAY 240

Query: 221 TSDGTTLFE 229
             +   +  
Sbjct: 241 EMNSKVIST 249


>gi|312880335|ref|ZP_07740135.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM
           12260]
 gi|310783626|gb|EFQ24024.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM
           12260]
          Length = 262

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +A       L    +N   +LE   S +  +            +       V 
Sbjct: 168 QEIGQIQLARFVNPGGLRASGKNL--FLETPASGAPIVGNPGDDGLGATLQRVLEMANVQ 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + EE+  +I  +++Y  ++K I   D++L+      +
Sbjct: 226 VVEEMVNMIVAQRAYEANSKTISTADELLRIANNLRR 262



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 11/174 (6%), Positives = 30/174 (17%), Gaps = 27/174 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++                   +  N+ N +   Y +                        
Sbjct: 1   MIRSLWSGATGMIAQQTNLDVVSNNLANVNTSGYKKVRADFQDLMYQIDREPGAPVEPAS 60

Query: 47  --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V            M +  +    +          F  +               
Sbjct: 61  MIPTGIQVGLGTRVVGTSRIMGEGNIQTTGNPTDVAIEGDGFYQV------TLPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 R             +L   +           +T+ +    +  D + +
Sbjct: 115 TRDGAWRIDGNGQIVTSDGFLLEPAITIPDNMKELIISTTGQVSVLLPGDPNPQ 168


>gi|237752808|ref|ZP_04583288.1| flagellar basal-body rod protein distal rod protein [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376297|gb|EEO26388.1| flagellar basal-body rod protein distal rod protein [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 263

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++     +       F    + D      +  S          +   +L
Sbjct: 76  AVQKIFSQGNFKETEQNLDVAITGNGFFQIELPDGTIAYTRDGSFKRDDEGNVVNAQGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         +    ++                  L     N   +L
Sbjct: 136 LVPNITIPDDATQINIGKDGTVTVVQGNETEVNQLGQIETVNFINPAGLHALGDNL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             N S    +       F  +++ +  T  V L EE++ LI  +++Y  ++K I   D M
Sbjct: 194 NTNASGDPIVGTPGLNGFGQLAQGFVETSNVKLVEEMTDLIVGQRAYEANSKSIQTADSM 253

Query: 472 LQTLLEGVK 480
           LQ + +  +
Sbjct: 254 LQIVNQLKR 262



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/255 (8%), Positives = 48/255 (18%), Gaps = 34/255 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q      NI N +   Y +                        
Sbjct: 1   MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K             +        F  ++              
Sbjct: 61  LSPTGIEVGLGVRPTAVQKIFSQGNFKETEQNLDVAITGNGFFQIE------LPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   E    N    +L   +    +    N             + +     +I 
Sbjct: 115 TRDGSFKRDDEGNVVNAQGYLLVPNITIPDDATQINIGKDGTVTVVQGNETEVNQLGQIE 174

Query: 162 NLRRF-------LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
            +          L +   +N              +   Q      + S +  +  +    
Sbjct: 175 TVNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLAQGFVETSNVKLVEEMTDLI 234

Query: 215 NDMVVYTSDGTTLFE 229
                Y ++  ++  
Sbjct: 235 VGQRAYEANSKSIQT 249


>gi|171059410|ref|YP_001791759.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6]
 gi|170776855|gb|ACB34994.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R       ++     +       F    + D      +  +  +    Q  ++  + 
Sbjct: 76  ATSRQFTQGNLQQSGNTLDVAIKGNGFFPIQMPDGTTGYTRDGAFQVSATGQLVTSAGYA 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G         V         +     +  +      VA       L     N     
Sbjct: 136 VQPGITIPADAQTVTIAPDGVVSVALPGQTAPQVLGQLQVANFINPAGLEAKGGNLYT-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + +           +S+ +  T  VN+ EEL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ETASSGTPNGGAPGSNGLGSLSQGFLETSNVNVVEELVTMIQTQRAYELNSKAISTSDQM 253

Query: 472 LQTL 475
           LQ L
Sbjct: 254 LQKL 257



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/222 (5%), Positives = 43/222 (19%), Gaps = 27/222 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++        Q   +  N+ N     Y +   +                    
Sbjct: 1   MMRALWISKTGMEAQQTQLDVVSNNLANVATNGYKKSHAVFEDLMYQTLRQSGAASSEQT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         ++      L    + +        F  ++           +  
Sbjct: 61  QLPTGLQVGLGVRTVATSRQFTQGNLQQSGNTLDVAIKGNGFFPIQ------MPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + S        +   +   +   A+               +      ++  ++ 
Sbjct: 115 TRDGAFQVSATGQLVTSAGYAVQPGITIPADAQTVTIAPDGVVSVALPGQTAPQVLGQLQ 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                            +   +     +        L  +S+
Sbjct: 175 VANFINPAGLEAKGGNLYTETASSGTPNGGAPGSNGLGSLSQ 216


>gi|224418355|ref|ZP_03656361.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491]
          Length = 727

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/433 (10%), Positives = 115/433 (26%), Gaps = 25/433 (5%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDILGKTVID 129
           +   + L  +F++  E  + + +Y N        +          + N  ++    T++D
Sbjct: 294 STNNETLESAFQSQVETFTENTNYPNGAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVD 353

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           + +      N+   E   I  +                 E   +      +         
Sbjct: 354 STKVANYKENSEYNEGDFIVYEGKIYQRSNEPITMVEDPETGELIAQNPAEDTIGWKEIG 413

Query: 190 FLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
              +  +   +       +  +  N          G T              +S   T  
Sbjct: 414 ENSRGMITEYEAGTTYEENAMVTLNGILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQL 473

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR--------VLIGS 300
           +   +     V S+ G          LL+  D       N+  E+           +I  
Sbjct: 474 NVATYETNTEVYSDSGEKFILKSQYILLEQGDQTATPPINERWEVKSAIYDNTGKTMISE 533

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVS 358
                 I+ N++  P     +      +                 +  + +        +
Sbjct: 534 NPVFSEISFNADGTPNAEPFEVAFQNGSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGT 593

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
              + N   +     ++ ++ +   +      +A    +  L +   N         +  
Sbjct: 594 SSGIMNDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGE 653

Query: 419 HDLHM-----------KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +              + + +  + +    T  V+    L+ LI  ++ Y +S K I  
Sbjct: 654 TSVVSGPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITT 713

Query: 468 TDKMLQTLLEGVK 480
            D+++Q  ++  +
Sbjct: 714 ADQLMQEAIQLKR 726


>gi|170768358|ref|ZP_02902811.1| flagellar basal-body rod protein FlgG [Escherichia albertii
           TW07627]
 gi|170123124|gb|EDS92055.1| flagellar basal-body rod protein FlgG [Escherichia albertii
           TW07627]
          Length = 260

 Score = 72.8 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAVPVQVGQLNLTTFMNDTGLESIGENLYS--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 48/209 (22%), Gaps = 24/209 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +              +   +   A  +              +  A   + +++  L 
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQA---VPVQVGQLN 174

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     ++I     S+  +    ++
Sbjct: 175 LTTFMNDTGLESIGENLYSETQSSGAPNE 203


>gi|323490149|ref|ZP_08095369.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2]
 gi|323396197|gb|EGA89023.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2]
          Length = 255

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 6/216 (2%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           S          +Q+         N       V+         I GN   V     A G  
Sbjct: 46  SQNMSNSGTNPMQVGLGTTTSAINVNHNPGSVMSTGIETDLAIMGNGFFVVQDPEAPGAD 105

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                     S T   N       + L   G+      ++  ++    +++    D    
Sbjct: 106 GQFLTRSGSFSVTTAGNLVSAQGYNVLNSAGAPINVAGYDSFSINRSGEVVGRQADGTET 165

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
              F  ++       L +   +            +     + +    I         V+L
Sbjct: 166 TIAFVGISNPENPEGLKKVGGSM------YEVPPNTPTQTAALANTEIGSGMLEMSNVDL 219

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE + +I  ++ +  +++ I  +D++LQ ++   +
Sbjct: 220 TEEFTEMIIAQRGFQANSRTITTSDEILQEVMNLKR 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/164 (8%), Positives = 36/164 (21%), Gaps = 14/164 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENV 50
           +L       +   N   +   I  NI N +   Y +                     +  
Sbjct: 1   MLRSMYSGVSGMKNFQTKLDVIGNNIANVNTIGYKKSTINFQDLLSQNMSNSGTNPMQVG 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
              T  + N N     + +         +   F  +++        +            +
Sbjct: 61  LGTTTSAINVNHNPGSVMSTGIETDLAIMGNGFFVVQDP--EAPGADGQFLTRSGSFSVT 118

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                 +     +  +          +  +  R  + +   AD 
Sbjct: 119 TAGNLVSAQGYNVLNSAGAPINVAGYDSFSINRSGEVVGRQADG 162


>gi|117619599|ref|YP_857341.1| flagellar basal body rod protein FlgG [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561006|gb|ABK37954.1| flagellar basal-body rod protein FlgG [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 262

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 72/262 (27%), Gaps = 3/262 (1%)

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           M        T  +    +I+    N    ++               Q    P G+  A  
Sbjct: 1   MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           +    ++     ++    +       +    + +       +    + D      +    
Sbjct: 61  ERPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395
           T+       +  +       +          +     +      D  ++           
Sbjct: 121 TLNSEGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFV 180

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N   ++E   S +    +        I +    T  VN+ EEL  LI+ +
Sbjct: 181 NASGLQPMGENM--FVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQAQ 238

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           + Y +++K++   D M+  L++
Sbjct: 239 RVYEMNSKVLSAVDGMMSFLIQ 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/214 (6%), Positives = 40/214 (18%), Gaps = 17/214 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      +    N+ NA    Y +   +           P   +    
Sbjct: 1   MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60

Query: 56  RSENKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              +  M          +  H+  +       L    + +          ++      + 
Sbjct: 61  ERPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + E            +  I   E           +V              +  +    
Sbjct: 121 TLNSEGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKG--DGASQVVGQINTTD 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                    +      +  +     Q       +
Sbjct: 179 FVNASGLQPMGENMFVETQSSGAPVQGVAGTDGL 212


>gi|90411007|ref|ZP_01219021.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK]
 gi|90328220|gb|EAS44531.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK]
          Length = 262

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSSQDTELPSGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGEGFFQVLLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NK 384
            +    +    TI  + Q  +  S       ++         +    ++         N+
Sbjct: 110 GNIGYTRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                   G      L    +N   +L    S      +        I +S   T  VN+
Sbjct: 170 VLGQLTTVGFINPGGLEPIGQNL--FLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 54/235 (22%), Gaps = 32/235 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +      ++   +      ++I  N+ NA    + +   +                    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  K          ++A+      + F  +           N   
Sbjct: 61  ELPSGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGEGFFQVL------LPDGNIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIE 157
               +   + +          + +  I   E+     V N    +  ++  + +      
Sbjct: 115 TRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQVLGQL 174

Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             +  +     E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 175 TTVGFINPGGLEPIGQNLFLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNVTE 229


>gi|238796906|ref|ZP_04640410.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC
           43969]
 gi|238719166|gb|EEQ10978.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC
           43969]
          Length = 260

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S     N Q  ++  +       
Sbjct: 82  SQGNLTQTNNSKDLAIQGHGFFQVQMADGTTAYSRDGSFQFDQNGQLVTSSGYPVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +    +         +     +  +      V+    +  L     N   + E   S 
Sbjct: 142 IPQDADTLTVGNDGIVSVTVPGQTAPQQVGQLTVSTFINDSGLESIGENL--YRETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNETTPGLNGGGTLKQGYIETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 10/157 (6%), Positives = 28/157 (17%), Gaps = 33/157 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++         F  ++           
Sbjct: 61  TIPTGLQLGTGVRPVATERIHSQ---GNLTQTNNSKDLAIQGHGFFQVQ------MADGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
           +        +          S   +   +    +   
Sbjct: 112 TAYSRDGSFQFDQNGQLVTSSGYPVQPAITIPQDADT 148


>gi|145298493|ref|YP_001141334.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851265|gb|ABO89586.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 262

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 76/262 (29%), Gaps = 3/262 (1%)

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           M        T  +    +I+    N    ++               Q    P G+  A  
Sbjct: 1   MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++   ++     ++    +       +    + +       +    + D      +    
Sbjct: 61  ELPSGLMLGAGAKVVATQKNHGQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395
           T+       +  +       +          ++    +      D  ++      ++   
Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVSTDGQVSIQLKGDGASQVVGQINLSDFV 180

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N   +LE   S +    +        I +    T  VN+ EEL  LI+ +
Sbjct: 181 NASGLQPMGENM--FLETQSSGAPIGGVAGADGLGVIKQGMLETSNVNVTEELVNLIQAQ 238

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           + Y +++K++   D M+  L++
Sbjct: 239 RVYEMNSKVLSAVDGMMSFLIQ 260



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/161 (7%), Positives = 35/161 (21%), Gaps = 15/161 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      +    N+ NA    Y +   +           P   +    
Sbjct: 1   MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60

Query: 56  R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  +  H   +       L    + +          ++      + 
Sbjct: 61  ELPSGLMLGAGAKVVATQKNHGQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
             + E            +  I   E       ++  +V   
Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVSTDGQVSIQ 161


>gi|218689031|ref|YP_002397243.1| flagellar basal body rod protein FlgG [Escherichia coli ED1a]
 gi|218426595|emb|CAR07423.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli ED1a]
          Length = 260

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y     VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVEMSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|163782718|ref|ZP_02177714.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881839|gb|EDP75347.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 262

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 56/191 (29%), Gaps = 2/191 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           + +   +       +     +       F    + D      +     +  + +  ++  
Sbjct: 74  IADTYGIFTQGNINQTGNTLDLAIQGDGFFKVVLPDGTIAYTRNGQFRLDRDGRIVNSDG 133

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
           +  D          ++   A     +     +  +      +A       L     N   
Sbjct: 134 YPLDPEISIPPDALSIGIAADGTVTVLRQGATSVEEVGRIELAKFVNPAGLRRVGNNL-- 191

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +++ + S    +          + + Y  +  VN+ EE+  LI  +++Y  + K I   D
Sbjct: 192 YIQTDASGEPLIDNPGNQGIGTLLQGYLESSNVNIVEEMVNLIIAQRAYEFNTKGITAAD 251

Query: 470 KMLQTLLEGVK 480
           +ML       +
Sbjct: 252 EMLSQAANLRR 262



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/216 (7%), Positives = 47/216 (21%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      + +           I  N+ N +   + +                        
Sbjct: 1   MFRALWTSASGMTAQQTNLDVISHNMANVNTIGFKKMRPTFQDLIYQTVREPGAPTSPTT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP    +                 ++   + +        F  +               
Sbjct: 61  RSPSGFQIGLGTYIADTYGIFTQGNINQTGNTLDLAIQGDGFFKVV------LPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               + R   +    N     L    ++  +A  +    + +   +++     ++   +E
Sbjct: 115 TRNGQFRLDRDGRIVNSDGYPLDPEISIPPDALSIGIAADGTVTVLRQGATSVEEVGRIE 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++          V N+      AS     D    + 
Sbjct: 175 LAKFVNPAGLRRVGNNLYIQTDASGEPLIDNPGNQG 210


>gi|332161324|ref|YP_004297901.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605244|emb|CBY26742.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325665554|gb|ADZ42198.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860604|emb|CBX70901.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica
           W22703]
          Length = 260

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D  N   +  S     N Q  ++  F             ++ 
Sbjct: 91  NTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTDQNGQLVTSGGFQIQPAITIPANAMSMT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +     +  +      +A    N  L     N   + E   S + +      
Sbjct: 151 VGRDGIVSVTLPGQTATQQVGQLTLATFINNSGLESVGENL--YQETASSGAPNETTPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 209 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 260



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 31/150 (20%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQTDQNGQLVTSGGFQIQPAITIPANAM 147


>gi|307823531|ref|ZP_07653760.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96]
 gi|307735516|gb|EFO06364.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96]
          Length = 597

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                        Q  +  S                 ++     +   Y +  +K     
Sbjct: 451 DPMAFDIDFAKTAQTTATFSVNNSSQDGLPAGNLTGIDVDDAGVVFARYSNGGSKTLGQV 510

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +A   +N +L +       W + + S +          F  I  S   +  V+L  +L 
Sbjct: 511 ALARFQSNQSLAKLGD--TAWAKTSSSGAPIYGAAGDNNFGTIQSSALESSTVDLSAQLV 568

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            LI  +Q+Y  +++ I     +++T+L  
Sbjct: 569 KLIIAQQAYQANSQTITTEKTLVETILRA 597



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 63/273 (23%), Gaps = 29/273 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----------Q 55
            F  A +    AS        NI N+    +            +                
Sbjct: 2   SFATALSGLQAASTNLQVTGNNIANSQTVGFKESRAEFADVYASSIGGVSKTQPGSGVKV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP---------THYISK 106
               +   D  +   S+++        F  L + ++  D  N +                
Sbjct: 62  TEVAQQFKDGTIDPTSNSLDLALSGNGFFVLADTVNLPDPANPTAPVDPSVPTSYTRNGA 121

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-- 164
            +        N     L       A         S    + +  D  + +     N+   
Sbjct: 122 FKLDSSGNVVNSQGKYLLAFA---ANGTTVAEGFSVGVFRPLTIDTSQGLPNSTENINLA 178

Query: 165 -----RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                   +  T V D     + +   +    D +       +  +        +  + +
Sbjct: 179 LTINGGATAPTTTVFDPTNALSYNNTTSITTYDSQGNAHIASTYYVKTPVANVWDAYLFL 238

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
                TT  + VP         S TV +   PI
Sbjct: 239 DDYGITTGGQAVPPAAAAASTVSATVNTPGLPI 271


>gi|217076897|ref|YP_002334613.1| flagellar basal-body rod protein FlgG [Thermosipho africanus
           TCF52B]
 gi|217036750|gb|ACJ75272.1| flagellar basal-body rod protein FlgG [Thermosipho africanus
           TCF52B]
          Length = 261

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 3/193 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            +L    R+      E+   + +       F    ++D      +     I  N +  ++
Sbjct: 72  TKLSATTRIFTQGNLERTGNSLDLAISGDGFFQIQLQDGRIAYTRDGQFKIDGNGRIITS 131

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              L     V  +   ++  ++    +     D   +N     +        L     N 
Sbjct: 132 NGNLLSPNIVVPQNAVSLS-ISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIGDNL 190

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +LE   S +       Q  F  I + Y     V++ +E+  +I   ++Y ++++ I  
Sbjct: 191 --FLETPASGTPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISAMRAYELNSRTIQT 248

Query: 468 TDKMLQTLLEGVK 480
            D+ML+T     +
Sbjct: 249 ADEMLRTASSMKR 261



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/224 (6%), Positives = 51/224 (22%), Gaps = 27/224 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A         +  ++  NI N D   Y +  +                     
Sbjct: 1   MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKSEFQDLLYDYSKNAGAATAQNS 60

Query: 45  ---ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  +      L    +++        F  ++              
Sbjct: 61  LHPTGLYVGHGTKLSATTRIFTQGNLERTGNSLDLAISGDGFFQIQ------LQDGRIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + +          + ++L   ++     V  + +       +++    + +     
Sbjct: 115 TRDGQFKIDGNGRIITSNGNLLSPNIVVPQNAVSLSISPDGIVTAELQDGTLQNLGTITL 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                 S L  + D +  +T +     +    +D     +   +
Sbjct: 175 VRFINPSGLKAIGDNLFLETPASGTPVEGTAGQDGFGSILQGYV 218


>gi|54308099|ref|YP_129119.1| flagellar basal body rod protein FlgG [Photobacterium profundum
           SS9]
 gi|46912525|emb|CAG19317.1| putative polar flagellar FlgG [Photobacterium profundum SS9]
          Length = 262

 Score = 72.4 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 68/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    + +       F    + D
Sbjct: 50  NQPGGQSSQDTELPSGLMLGAGSKVVATQKVFTQGNTQTTNNSMDMMIEGEGFFQILLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NK 384
            +    +    TI  + Q  +  S       ++         +    ++         N+
Sbjct: 110 GNIGYTRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                   G      L    +N   +L    S      +        I +S   T  VN+
Sbjct: 170 VLGQLTTVGFINPGGLEPIGQNL--FLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 54/235 (22%), Gaps = 32/235 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +      ++   +      ++I  N+ NA    + +   +                    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  K          ++++      + F  +           N   
Sbjct: 61  ELPSGLMLGAGSKVVATQKVFTQGNTQTTNNSMDMMIEGEGFFQIL------LPDGNIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIE 157
               +   + +          + +  I   E+     V N    +  ++  + +      
Sbjct: 115 TRNGQFTINGDGQMVTTGSGYVVQPEIAIPEDAVGITVGNDGEVSARIRGQQENQVLGQL 174

Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             +  +     E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 175 TTVGFINPGGLEPIGQNLFLPTGASGDAQEGVPGLDGLGAIRQSMLETSNVNVTE 229


>gi|311992329|gb|ADQ26738.1| flagellar distal rod protein [Aeromonas hydrophila]
          Length = 261

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 71/258 (27%), Gaps = 3/258 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+  A  +   
Sbjct: 4   LWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERPS 63

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++     ++    +       +    + +       +    + D      +    T+  
Sbjct: 64  GLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNS 123

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGINTNVT 399
                +  +       +          +     +      D  ++               
Sbjct: 124 EGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFVNASG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N   ++E   S +    +        I +    T  VN+ EEL  LI+ ++ Y 
Sbjct: 184 LQPMGENM--FVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQAQRVYE 241

Query: 460 ISNKLIMFTDKMLQTLLE 477
           +++K++   D M+  L++
Sbjct: 242 MNSKVLSAVDGMMSFLIQ 259



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/226 (7%), Positives = 50/226 (22%), Gaps = 20/226 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQRSE 58
               ++   +      +    N+ NA    Y +   +           P   +       
Sbjct: 3   ALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERP 62

Query: 59  NKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           +  M          +  H+  +       L    + +          ++      +   +
Sbjct: 63  SGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLN 122

Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            E            +  I   E      +      + +++   A            +   
Sbjct: 123 SEGTIVTPGNGYPLQPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFVNAS 182

Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             +    N  +    + +        D   V+ Q + E   ++   
Sbjct: 183 GLQPMGENMFVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTE 228


>gi|229017042|ref|ZP_04173962.1| Flagellar hook protein flgE [Bacillus cereus AH1273]
 gi|229023223|ref|ZP_04179734.1| Flagellar hook protein flgE [Bacillus cereus AH1272]
 gi|228738148|gb|EEL88633.1| Flagellar hook protein flgE [Bacillus cereus AH1272]
 gi|228744313|gb|EEL94395.1| Flagellar hook protein flgE [Bacillus cereus AH1273]
          Length = 407

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 3/183 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLD-NKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             F+E     GN              + +       +         + +  +        
Sbjct: 227 TEFTEVQGAGGNVTFDAVGNPDPVNPEANIPFNGGTVKIDFSKLTNHPTEKTIAVTNVDG 286

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                     +     ++  Y D   K      V  +     L++       +   N + 
Sbjct: 287 RPAATVKDCFITDGGYVMVKYSDGSMKAAGQLAVGMLPNEGGLMKTGNG--NFTATNTTG 344

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              L +  Q     +         V+L  E   L+  ++ +  + K+I  +D++L  ++ 
Sbjct: 345 ILALGVSGQNGAGKVRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLTEVVN 404

Query: 478 GVK 480
            ++
Sbjct: 405 LIR 407



 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/268 (8%), Positives = 67/268 (25%), Gaps = 10/268 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N      +    NI NA    Y ++  M      N ++      +   
Sbjct: 1   MIKALYTSITGLNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGA--KGDDRY 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEA--------LKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +  + +     +  +            +     + +          +  + +  
Sbjct: 59  AGTNPKSIGNGVKMSGTVTDYSDGTITLTGGKVQAAMEGNGFFVVGDSKAGNMEFTRKGT 118

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
               S+  +  T          + +T   ++  I       +   I  +R     +    
Sbjct: 119 FAISSDYYITNTGGQYVFAYPADPSTGNVDLSGIPGPLQIPMGSAIGGIRTSKGIVGGNI 178

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
            A       +  A+D       +  + ++    +                 T  +    +
Sbjct: 179 PADAKHITQELPAYDDAGNTWTMRVEFTQDGEHNYKYTVKMRNDSKKETEFTEVQGAGGN 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSN 262
           + F+ + +    +    I  +G  V  +
Sbjct: 239 VTFDAVGNPDPVNPEANIPFNGGTVKID 266


>gi|260752886|ref|YP_003225779.1| hypothetical protein Za10_0647 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552249|gb|ACV75195.1| protein of unknown function DUF1078 domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 417

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/473 (9%), Positives = 114/473 (24%), Gaps = 59/473 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F  +    N A    +    NI N+ +  + +  T       +    + ++  +    +
Sbjct: 2   AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPYASAKNIGQGTRLR 61

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                 ++   +   ++ + +          +   +  IS  RD      KN +      
Sbjct: 62  ATIQDFTSGSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVTSDG 121

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +                                  +    +   + N+          
Sbjct: 122 HYL---------------------------------QVYATTNSGDIYNNGQTGSATGGR 148

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
              +           IS   G +  V NN         G T+ E     +    + +   
Sbjct: 149 TVKNLTLPSYEDQVSISATDGNTVQVGNNLAATGTVKIGGTVIENAKITLGGATVQADKT 208

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T++   + I G  +++  G+                        +         + +   
Sbjct: 209 TAKGGVLTITGGTITAADGT------------------------ISANTATYTSTGATAT 244

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
                  +        G    +     G   T           +      S       + 
Sbjct: 245 VTTSAGTSSLTAITELGTLSYNGDTYSGSISTADGTVVTAGTVTASDTDTSGDTSSALSN 304

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
            ++     +   + +          +  +N    L         W     S S +     
Sbjct: 305 ISVGTDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNA--NWTVTGTSGSLNYREAD 362

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +         ++L +EL  LI  ++++  ++K I   ++M+  ++  
Sbjct: 363 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVMNI 415


>gi|1272368|gb|AAA97476.1| LfgE [Vibrio parahaemolyticus]
          Length = 362

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 71/281 (25%), Gaps = 3/281 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             DH   +             ++    +   L  
Sbjct: 59  NFDKNGSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D+   ++     + +           +    ++N       +            +  
Sbjct: 119 YSVDSNNNLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSF 178

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           ++       D L    +     +    N  ++ V    G T   T+P   N +   +   
Sbjct: 179 NSSYTTQVYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPT 238

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
            S +      G    S   +     +  A   +  +    +
Sbjct: 239 GSFNVAFPAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGY 279



 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/359 (6%), Positives = 75/359 (20%), Gaps = 2/359 (0%)

Query: 85  ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
           AL  + + +   N    +  +      +      +    G          +         
Sbjct: 6   ALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVASISQNFDKNGS 65

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +       D  I      + +     T+   +  F T   +        +       S  
Sbjct: 66  ITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNGAKLQGYSVDSNN 125

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             ++  V N        +   T       + +          +  +P        S    
Sbjct: 126 NLMTGSVGNIQVSTSSLNAKATDKLDFVANFDASAKAIDKAVTPFDPADPTSFNSSYTTQ 185

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                G    + Q              ++        +       +          +   
Sbjct: 186 VYDSLGNSHTVTQYFTKTADNAWEVNVQVDGGKTPVSTIPVTFNKDGTLAAPTGSFNVAF 245

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                    +   +  + Q+ +      +  +           +     +   Y +  ++
Sbjct: 246 PAAGANAMSVDINLKGSTQFGAAFGVSTNSPNGYTSGELAGVRVEDNGMVYATYTNGQSQ 305

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                 +A       L +   +   W +   S +  + +       +++        V+
Sbjct: 306 LQGQVVLADFANTQGLAKV--SGTAWTQSFSSGAPIMGVPGSGTLGNLTPGALEGSNVD 362


>gi|148546709|ref|YP_001266811.1| flagellar basal body rod protein FlgG [Pseudomonas putida F1]
 gi|148510767|gb|ABQ77627.1| flagellar basal-body rod protein FlgG [Pseudomonas putida F1]
          Length = 261

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 48/180 (26%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F      D      +  +  +  + Q  +      
Sbjct: 77  TQKNFQTGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVNADGLAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAMGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 50/242 (20%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T         N     L    + +      + F  + +             
Sbjct: 61  ELPSGLQVGTGVRIVGTQKNFQTGSLQTTENPLDMAVNGRGFFQILQ------PDGTVSY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   + +    N     L     V ++A+      + +          A     ++
Sbjct: 115 TRDGTFHLNSDGQIVNADGLALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++         + N+      AS                    +   +         ++
Sbjct: 175 TADFINPAGLQAMGNNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 TT 236


>gi|317492426|ref|ZP_07950855.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919765|gb|EFV41095.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 260

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F      D      +  S  +  N Q  ++  F              +    
Sbjct: 94  DVAIKGQGFFQVQQPDGTLAYTRDGSFQVDQNGQLVTSSGFQVVPAITIPANATKLTIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +N    +         +     +  L     N   + E   S +           
Sbjct: 154 DGIVSVNQQGQTATTQVGQLTLTTFINDAGLESVGENL--YQETESSGAPTESTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 212 GMLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQL 260



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 29/149 (19%), Gaps = 21/149 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+            I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +                 
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTDNSRDVAIKGQGFFQVQQPDGTLAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              +          S   +   +   A  
Sbjct: 118 GSFQVDQNGQLVTSSGFQVVPAITIPANA 146


>gi|114330363|ref|YP_746585.1| flagellar basal body rod protein FlgG [Nitrosomonas eutropha C91]
 gi|114307377|gb|ABI58620.1| flagellar basal-body rod protein FlgG [Nitrosomonas eutropha C91]
          Length = 260

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 58/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
               + +    ++     +       F    + D      +  +     + Q  +   F 
Sbjct: 76  ATENIFLQGNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAFQSDQDGQLVTASGFP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       ++         +     +         +        L  +  N   +L
Sbjct: 136 LQPSITIPPNTLSITIGRDGTVSVLTPGSATPLPVGNIQLTSFINPAGLQRFGENL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S   +  +        +++ +  T  VN+ EEL  +I+ +++Y I+++ I  +D+M
Sbjct: 194 ETMSSGVPNPGIPGTNGIGLLNQGFVETSNVNVVEELVEMIQTQRAYEINSRSIQTSDQM 253

Query: 472 LQTLLEG 478
           L  L + 
Sbjct: 254 LSRLTQL 260



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 29/153 (18%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    +   I  N+ N     + R   +                    
Sbjct: 1   MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    +        + F  +               
Sbjct: 61  RLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGEGFFQIL------LPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                 +   +      S   L  ++      +
Sbjct: 115 TRDGAFQSDQDGQLVTASGFPLQPSITIPPNTL 147


>gi|238782794|ref|ZP_04626823.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC
           43970]
 gi|238716217|gb|EEQ08200.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC
           43970]
          Length = 260

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 2/176 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + +       F    + D      +  S  I  N Q  ++  +            
Sbjct: 87  NQTSNSKDLAIQGNGFFQIQLADGTTAFTRDGSFQIDQNGQLVTSSGYPVQPAITLPPDA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             +         +     +  +      ++    +  L     N   + E   S + +  
Sbjct: 147 ETLTVGNDGIVSVTVQGQTAPQQVGQITLSTFINDSGLESIGENL--YRETQSSGAPNET 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 205 TPGLNGSGTLRQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQRLTQL 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/183 (6%), Positives = 36/183 (19%), Gaps = 33/183 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSTEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +       L+  S++         F  ++           
Sbjct: 61  TIPSGLQLGTGVRPVSTERLHSQ---GSLNQTSNSKDLAIQGNGFFQIQ------LADGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +          S   +   +    +               ++     +   
Sbjct: 112 TAFTRDGSFQIDQNGQLVTSSGYPVQPAITLPPDAETLTVGNDGIVSVTVQGQTAPQQVG 171

Query: 159 EIS 161
           +I+
Sbjct: 172 QIT 174


>gi|224372657|ref|YP_002607029.1| flagellar basal body rod protein FlgG [Nautilia profundicola AmH]
 gi|223588586|gb|ACM92322.1| flagellar basal-body rod protein FlgG [Nautilia profundicola AmH]
          Length = 262

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 4/185 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I S         N +          ++  D ++         ++       S        
Sbjct: 80  IFSQGNFKETGNNLDVAIQGDGFFQVQLPDGRIAYTRDGAFKLDADGNIVTSDGYKLIPN 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNK--NFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                  V+   G    ++       +        +A       L     N   +++   
Sbjct: 140 ITLPADTVQVSIGTDGTVSVLEAGQTQMQQIGQIEIAKFINPAGLHSLGSNL--YIDTTA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S    +          + + +     V L EE++ LI  +++Y+ ++K I+ +D+MLQT+
Sbjct: 198 SGDPIVSTPGLDGTGELRQGFVEMSNVQLVEEMTDLITGQRAYDAASKAIVTSDEMLQTV 257

Query: 476 LEGVK 480
               +
Sbjct: 258 NNLKR 262



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/210 (8%), Positives = 44/210 (20%), Gaps = 35/210 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q   +  NI N +   Y ++                       
Sbjct: 1   MVRSLYTAATGMMAQQMQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTSTSTTT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                     + +        F  ++           
Sbjct: 61  QSPTGINVGLGVRPTAVTKI---FSQGNFKETGNNLDVAIQGDGFFQVQ------LPDGR 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEI 156
                    +   +          L   +   A+ V  +  T  +   ++  +    +  
Sbjct: 112 IAYTRDGAFKLDADGNIVTSDGYKLIPNITLPADTVQVSIGTDGTVSVLEAGQTQMQQIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           ++EI+         ++ ++     TAS   
Sbjct: 172 QIEIAKFINPAGLHSLGSNLYIDTTASGDP 201


>gi|300722680|ref|YP_003711970.1| flagellar basal-body rod cell-distal protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629187|emb|CBJ89783.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Xenorhabdus nematophila ATCC 19061]
          Length = 260

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +     +       F    + D      +  S  +  N Q  +   F      +
Sbjct: 82  SQGNLAQTNNTKDVAIKGQGFFQIQMPDGTTGYTRDGSFQVDQNGQLVTAGGFQVVPAII 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +         +N    +  +      +        L     N   +LE N S 
Sbjct: 142 IPDNATKIGIARDGIISVNVQGQNAPQQVGQLTLTTFINESGLESIGENL--YLETNSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
               +         + + Y  T  VN+ EEL  +I+V+++Y I++K +  +D+MLQ L +
Sbjct: 200 VPVENAPGINGTGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTSDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 29/149 (19%), Gaps = 21/149 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT------------------MTT 44
           ++     A+   +        I  N+ N     + R+                      T
Sbjct: 1   MIRSLWIAKTGLDVQQTNMDVIANNLANVSTSGFKRQRVVSEELIYQTERQPGAMSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  NLPSGLQIGTGAR---PVATERLHSQGNLAQTNNTKDVAIKGQGFFQIQMPDGTTGYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              +              +   +I     
Sbjct: 118 GSFQVDQNGQLVTAGGFQVVPAIIIPDNA 146


>gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod protein [Janthinobacterium sp.
           Marseille]
 gi|151280203|gb|ABR88613.1| FlgG flagellar basal body rod protein [Janthinobacterium sp.
           Marseille]
          Length = 260

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                +    + +   +   F    + D      +  S       Q  ++  F      V
Sbjct: 82  TQGNLQLTSNSKDMAILGDGFFQVLMPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQPAIV 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +         +     +         VA       L     N   ++E   S 
Sbjct: 142 IPANATAISISRDGIVSVTVPGTTAQTEVGALQVATFINPAGLESKGENL--YVETTASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   +        ++ ++Y  T  VN+ EE+  +I+ +++Y I++K I  +D+MLQ L +
Sbjct: 200 NPTTNNPGTNGAGYVQQNYVETSNVNVVEEMVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 53/246 (21%), Gaps = 37/246 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQNIRQPGAASSQQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   S++     L   F  +            
Sbjct: 61  QLPSGLQIGTGVRPVATERIH---TQGNLQLTSNSKDMAILGDGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155
           +        +   +      S   +   ++  A             +  V    A  +  
Sbjct: 112 TAYTRDGSFQTDNQGQMVTSSGFPIQPAIVIPANATAISISRDGIVSVTVPGTTAQTEVG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
                + +     E    N  +   TAS +   +          + + +   +  V    
Sbjct: 172 ALQVATFINPAGLESKGENLYV-ETTASGNPTTNNPGTNGAGYVQQNYVETSNVNVVEEM 230

Query: 216 DMVVYT 221
             ++ T
Sbjct: 231 VNMIQT 236


>gi|313141887|ref|ZP_07804080.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491]
 gi|313130918|gb|EFR48535.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491]
          Length = 708

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/433 (10%), Positives = 115/433 (26%), Gaps = 25/433 (5%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDILGKTVID 129
           +   + L  +F++  E  + + +Y N        +          + N  ++    T++D
Sbjct: 275 STNNETLESAFQSQVETFTENTNYPNGAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVD 334

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           + +      N+   E   I  +                 E   +      +         
Sbjct: 335 STKVANYKENSEYNEGDFIVYEGKIYQRSNEPITMVEDPETGELIAQNPAEDTIGWKEIG 394

Query: 190 FLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
              +  +   +       +  +  N          G T              +S   T  
Sbjct: 395 ENSRGMITEYEAGTTYEENAMVTLNGILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQL 454

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR--------VLIGS 300
           +   +     V S+ G          LL+  D       N+  E+           +I  
Sbjct: 455 NVATYETNTEVYSDSGEKFILKSQYILLEQGDQTATPPINERWEVKSAIYDNTGKTMISE 514

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVS 358
                 I+ N++  P     +      +                 +  + +        +
Sbjct: 515 NPVFSEISFNADGTPNAEPFEVAFQNGSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGT 574

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
              + N   +     ++ ++ +   +      +A    +  L +   N         +  
Sbjct: 575 SSGIMNDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGE 634

Query: 419 HDLHM-----------KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +              + + +  + +    T  V+    L+ LI  ++ Y +S K I  
Sbjct: 635 TSVVSGPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITT 694

Query: 468 TDKMLQTLLEGVK 480
            D+++Q  ++  +
Sbjct: 695 ADQLMQEAIQLKR 707


>gi|146278639|ref|YP_001168798.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556880|gb|ABP71493.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17025]
          Length = 261

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            ++         + G  ++  ++      +      ++G      L     N   ++E  
Sbjct: 139 GITIPEDAASVAINGSGEVWAYFSGQVQPQLMGQITLSGFANEKGLEAIGSNL--FVETA 196

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            S +       +  F  + + Y     V+  +E++ LIK ++ Y ++ K+I   D+ML
Sbjct: 197 ASGAPIAGTPGEDGFGTLRQGYLEESSVDSVQEITELIKAQRGYELNAKVITAADQML 254



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 42/226 (18%), Gaps = 23/226 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALQIAATGMSAQQTRVDVISNNLANMSTTGYNPRRADFADLHYQQMVRPGTVSAEDGRML 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102
           P  V +         +  +    L      +      + +  +        +  + S   
Sbjct: 63  PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYIEVTLPSGQSAYTRDGSLKR 122

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               L  + + +       I             + +   + +VQ                
Sbjct: 123 SGEGLVVTSDGHEVAPGITIPEDAASVAINGSGEVWAYFSGQVQPQLMGQITLSGFANEK 182

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
               +     V  A      +     D          + S +  + 
Sbjct: 183 GLEAIGSNLFVETAASGAPIAGTPGEDGFGTLRQGYLEESSVDSVQ 228


>gi|22126388|ref|NP_669811.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM 10]
 gi|45441407|ref|NP_992946.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807175|ref|YP_651091.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua]
 gi|108812481|ref|YP_648248.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516]
 gi|145598608|ref|YP_001162684.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F]
 gi|149366249|ref|ZP_01888284.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125]
 gi|162420398|ref|YP_001606475.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola]
 gi|165925935|ref|ZP_02221767.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938754|ref|ZP_02227309.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010911|ref|ZP_02231809.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210683|ref|ZP_02236718.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401156|ref|ZP_02306659.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419985|ref|ZP_02311738.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425757|ref|ZP_02317510.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467493|ref|ZP_02332197.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1]
 gi|218928924|ref|YP_002346799.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92]
 gi|229896244|ref|ZP_04511414.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A]
 gi|229897179|ref|ZP_04512335.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897905|ref|ZP_04513056.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902863|ref|ZP_04517980.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516]
 gi|270486643|ref|ZP_06203717.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27]
 gi|294504028|ref|YP_003568090.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003]
 gi|21959374|gb|AAM86062.1|AE013853_10 cell-distal portion of basal-body rod [Yersinia pestis KIM 10]
 gi|45436267|gb|AAS61823.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776129|gb|ABG18648.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516]
 gi|108779088|gb|ABG13146.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua]
 gi|115347535|emb|CAL20444.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92]
 gi|145210304|gb|ABP39711.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F]
 gi|149292662|gb|EDM42736.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125]
 gi|162353213|gb|ABX87161.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola]
 gi|165913368|gb|EDR31990.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922139|gb|EDR39316.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990255|gb|EDR42556.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207863|gb|EDR52343.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961680|gb|EDR57701.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049545|gb|EDR60953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055156|gb|EDR64953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680310|gb|EEO76409.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516]
 gi|229688946|gb|EEO81011.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693516|gb|EEO83565.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701167|gb|EEO89196.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A]
 gi|262361786|gb|ACY58507.1| flagellar basal-body rod protein FlgG [Yersinia pestis D106004]
 gi|262366078|gb|ACY62635.1| flagellar basal-body rod protein FlgG [Yersinia pestis D182038]
 gi|270335147|gb|EFA45924.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27]
 gi|294354487|gb|ADE64828.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003]
 gi|320015465|gb|ADV99036.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 232

 Score = 72.4 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  N   +  S  +  N Q  +   F       
Sbjct: 54  SQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 113

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     N  L     N   + E   S 
Sbjct: 114 IPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSG 171

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 172 APNETTPGLNGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 231

Query: 478 G 478
            
Sbjct: 232 L 232


>gi|75675292|ref|YP_317713.1| flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi
           Nb-255]
 gi|74420162|gb|ABA04361.1| Flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi
           Nb-255]
          Length = 613

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/448 (9%), Positives = 100/448 (22%), Gaps = 14/448 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           M +    N +       S    +I  NI NA    Y    T        + +P       
Sbjct: 1   MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKE----MMSADDHYNNSPTHYISKLR 108
             +           + A +           F  ++     M +       +        +
Sbjct: 61  VTAYATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQ 120

Query: 109 DSLESYSKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                +  N +   L    +D      +         +   + A A   ++   +     
Sbjct: 121 VDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNNFVPAQATTTVQYAANLPSVP 180

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            +  +    A     A   +  DF    + L+           I   +      T  G  
Sbjct: 181 RTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPI 240

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
              T+   +                      +  ++ G+A+P G   A     D  V   
Sbjct: 241 TSATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDL 300

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             ++  +        +    I  ++     L +              +            
Sbjct: 301 LGRIGAITGAAPTIDAGTGAITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPG 360

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
               + +  ++ ++   +   +  Y                     G   + T   + + 
Sbjct: 361 AGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNLFYQA 420

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                    +  +     +  +   +S 
Sbjct: 421 DPNATGTQAAWINVGTNFTFGINGQLSS 448



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/372 (11%), Positives = 97/372 (26%), Gaps = 11/372 (2%)

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           DSL           +  T I   +                  D   ++   I  +     
Sbjct: 253 DSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDLLGRIGAITGAAP 312

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            +     AI   T +  D                 +I I+          V  ++  T+F
Sbjct: 313 TIDAGTGAITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPGAGVVIANDQTIF 372

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           +              T T+ +  +       +S          +       D      Q 
Sbjct: 373 QQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNL---FYQADPNATGTQA 429

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
               +        + +      S  +    ++ G + L N      S  +        N 
Sbjct: 430 AWINVGTNFTFGINGQLSSPVGSS-ITIPGVSVGSQSLGNLTLNIGSGGLTQYASSGGNA 488

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +      +           +     ++  + +  N +     ++  N    L        
Sbjct: 489 TINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLK------- 541

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                  + +++           IS S       ++ +E + LI  +Q+Y+ + K+I   
Sbjct: 542 ALDGGAYAVTNESGSAIAGASGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITTA 601

Query: 469 DKMLQTLLEGVK 480
           + M+Q LL  ++
Sbjct: 602 NSMVQDLLNVLR 613


>gi|205353083|ref|YP_002226884.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272864|emb|CAR37793.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628163|gb|EGE34506.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 260

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I+ K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINCKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +          +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  I+ +++   +
Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202


>gi|94312671|ref|YP_585880.1| flagellar basal body distal rod protein [Cupriavidus metallidurans
           CH34]
 gi|93356523|gb|ABF10611.1| flagellar basal body distal rod protein [Cupriavidus metallidurans
           CH34]
          Length = 261

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   A +   +   F    + D      +  S  +  N Q  ++  F+ +    
Sbjct: 82  TQGNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRDGSFQVDQNGQLVTSSGFVINPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 +V         +     +         +A       L     N   +++ + S 
Sbjct: 142 LPANYTSVNIARDGTVTVMQPGSTNAATVGQLQLATFPNPTGLESMGENL--YVQTDASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +  +        +  +Y     VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNTTVPGLNGAGTLQNNYVEASNVNVVEELVSMIQTQRAYEINSKAVQTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/169 (7%), Positives = 31/169 (18%), Gaps = 21/169 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQT 60

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + +H   +                          +     
Sbjct: 61  VLPSGMQIGTGVR---PVATERIHTQGNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
              +          S  ++   +   A     N               +
Sbjct: 118 GSFQVDQNGQLVTSSGFVINPAITLPANYTSVNIARDGTVTVMQPGSTN 166


>gi|85712256|ref|ZP_01043307.1| Flagella basal body rod protein [Idiomarina baltica OS145]
 gi|85693883|gb|EAQ31830.1| Flagella basal body rod protein [Idiomarina baltica OS145]
          Length = 262

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 70/208 (33%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+    +++ + ++     ++    +       +    + +       F    + D
Sbjct: 50  NQPGGQSAQDVELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMINGKGFFQVLMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNK 384
                 +    ++       ++ +       +         +++   ++ +    ++ N 
Sbjct: 110 GTLSYTRNGQFSVNEEGTLVTSGNGYPIEPQIQIPEDAISLSISQEGEVTVRQPGNAQNA 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L    +N   + E   S +    +       ++ +    T  VN+
Sbjct: 170 VIGQLNLASFINPAGLEPIGQNL--YKETAVSGAPQESVPGVDGVGNVRQGMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNLIEAQRGYEMNSKVISSVDQML 255



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 35/159 (22%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +   +  + I  N+ NA    + +   +           P   +    
Sbjct: 1   MNPALWISKTGLDAQQRDISVISNNLANASTVGFKKSRAIFEDLLYQNINQPGGQSAQDV 60

Query: 56  R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  +  H   +       L      K                  + 
Sbjct: 61  ELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMINGKGFFQVLMPDGTLSYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
             + E            +  I   E+ +    +   EV 
Sbjct: 121 SVNEEGTLVTSGNGYPIEPQIQIPEDAISLSISQEGEVT 159


>gi|291519588|emb|CBK74809.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4]
          Length = 582

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/332 (10%), Positives = 76/332 (22%), Gaps = 5/332 (1%)

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           D  ++                ++     T +           D    +   +   +T   
Sbjct: 252 DNTLDKIFGAAGTTTKTYNFSSNVTYDSTVANGTGTGGWVYTDTATNEKYLLSKATTTAG 311

Query: 213 NNNDMVVYTSDGTTLFETVP----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 +      T  E         +      +       N I   G+ +SS    +  
Sbjct: 312 ELMLTKLSDGTVLTYDEATNQIGDVSLTKLFGVATDDLKNLNTIDWSGLNLSSGTVKSEL 371

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +     +                         F+        +           I+    
Sbjct: 372 QITFDTVNYGLQFDTKEGTLITAGNDGGTTLMFNASLLGPNRNPTTEQNAAMSNIEVELG 431

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
            L    +         R  P      G   K       ++     +   Y +        
Sbjct: 432 ALLNYDNSGTSTVVANRGIPDGSSMRGEGKKLGTMTGLSVQSDGKIFGSYSNGNTVLLGQ 491

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             VA       L E   N       +          S    + ++        V+L  E 
Sbjct: 492 IAVAQFANASGLEEKGDNCYDTTLNSGEFDGIGIDISADG-SAMNTGQLEMANVDLSSEF 550

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +I  ++ +  ++++I  +D ML+ L+   +
Sbjct: 551 TDMITTQRGFQANSRIITVSDTMLEELINLKR 582



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/447 (9%), Positives = 103/447 (23%), Gaps = 19/447 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58
           ++               +   I  NI N +   +    T  +     + +  +  T    
Sbjct: 1   MMRSLFSGVAGLKTHQTKMDVIGNNISNVNTVAFKSSATTFSDIMYQTTQQASGATATRG 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALK-------------EMMSADDHYNNSPTHYIS 105
             N     L   + A                                  + + +      
Sbjct: 61  GTNAKQIGLGVTNGATKVSITSAGAAQSTGDALDIRLTDANSTNFFIVSNGSQNLFTRAG 120

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR- 164
                        +   L      +A++       +   ++ +RA+         +    
Sbjct: 121 SFYIDGNGNLAMTTTGYLVMGWQVDADDPSNIIKDTVSPLRVMRAENLTSAPEATTAANF 180

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             + +                  +D L         I ++ G +         V    + 
Sbjct: 181 AGVIDKNDSQFESTGGYVRSFTFYDNLGYAYNAKFSIKKVDGTTGKYSIELTNVFDQDNV 240

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L E +    +      +     +   +     V+ +   A   G    +     +   
Sbjct: 241 DKLAEYLAASPDNTLDKIFGAAGTTTKTYNFSSNVTYDSTVANGTGTGGWVYTDTATNEK 300

Query: 285 IFQNQLDEMARVLI-GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              ++    A  L+    S+   +  +        ++                TI  +  
Sbjct: 301 YLLSKATTTAGELMLTKLSDGTVLTYDEATNQIGDVSLTKLFGVATDDLKNLNTIDWSGL 360

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             S+ +   +         + ++       LI    D          + G N N T  + 
Sbjct: 361 NLSSGTVKSELQITFDTVNYGLQFDTKEGTLITAGNDGGTTLMFNASLLGPNRNPTTEQN 420

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFN 430
           A  S   +E     ++D    S VV N
Sbjct: 421 AAMSNIEVELGALLNYDNSGTSTVVAN 447


>gi|238919261|ref|YP_002932776.1| flagellar basal body rod protein FlgG [Edwardsiella ictaluri
           93-146]
 gi|238868830|gb|ACR68541.1| flagellar basal-body rod protein FlgG, putative [Edwardsiella
           ictaluri 93-146]
          Length = 260

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNGQLVTASGFQITPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     +  L     N   + E   S 
Sbjct: 142 IPANATSMTIGRDGIVSVTLQGQAAPQQVGQLTLNTFINDAGLESMGENL--YQETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L +
Sbjct: 200 SPTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/177 (7%), Positives = 32/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N     + R+  +                    
Sbjct: 1   MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       Q F  +           +
Sbjct: 61  NLPSGLQLGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQV------TLPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +          S   +   +   A                ++  A  +
Sbjct: 112 QAYTRDGSFQVDQNGQLVTASGFQITPAITIPANATSMTIGRDGIVSVTLQGQAAPQ 168


>gi|330880535|gb|EGH14684.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 61

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            S  V      +  +  GV+L EE + LIK +Q Y  S+++I     +  TL+  +
Sbjct: 6   ASAAVVAQAKSARDSVSGVSLDEEAANLIKYQQYYTASSQIIKAAQTIFSTLINSL 61


>gi|74101660|gb|AAZ99750.1| FlgGL [Aeromonas hydrophila]
          Length = 275

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 3/127 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYAR 405
           N   L     +         ++     +         N       +        L     
Sbjct: 144 NSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELGRITLTNFTNPAGLEALGG 203

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S      +  +     I +    +  VN+ EE+  +I  +++Y ++ K++
Sbjct: 204 NL--YRATGASGEAIEGVPGEEAMGAIKQFTLESSNVNVVEEMVDMITTQRAYEMNAKVV 261

Query: 466 MFTDKML 472
              D+ML
Sbjct: 262 SAADQML 268



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/199 (8%), Positives = 41/199 (20%), Gaps = 36/199 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ASI  N+ N +   + R                        
Sbjct: 15  MHAALWVSKTGLSAQDAKMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQN 74

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +              +  +    +   F         +     
Sbjct: 75  LSPIGIQMGNGVRVVGTQKV---FTPGQFQNTNQELDMAVVGAGF------FGVERPDGE 125

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155
           +      +   + E    N     +   +          +    T +  +   + + +  
Sbjct: 126 TAYTRNGQWHRNAEGLLVNSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELG 185

Query: 156 IELEISNLRRFLSELTVVN 174
                +       E    N
Sbjct: 186 RITLTNFTNPAGLEALGGN 204


>gi|126176154|ref|YP_001052303.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155]
 gi|304412506|ref|ZP_07394112.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183]
 gi|307307165|ref|ZP_07586903.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175]
 gi|125999359|gb|ABN63434.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155]
 gi|304349148|gb|EFM13560.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183]
 gi|306910404|gb|EFN40835.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175]
          Length = 261

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 57/206 (27%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++ AL  +   +      ++    ++      +      +       F      + 
Sbjct: 51  QPGGQVDALNNLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIEGHGFFQVEEPNG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D    +             ++         V  +    V              ++  ++ 
Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIANDGVVTAKMAGEAEPQDL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S      +        + +       VN+ E
Sbjct: 171 GQITLVNFTNPAGLEARGDNL--YRETAASGVAVEGVAGDQALGALRQGALEGANVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 41/185 (22%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                             K      +   S  +        F  ++E         +   
Sbjct: 61  NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIEGHGFFQVEE------PNGDLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   S E          L   ++   + +            K+  +A+ +   +I+
Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIANDGVVTAKMAGEAEPQDLGQIT 174

Query: 162 NLRRF 166
            +   
Sbjct: 175 LVNFT 179


>gi|296282279|ref|ZP_06860277.1| hypothetical protein CbatJ_01595 [Citromicrobium bathyomarinum
           JL354]
          Length = 269

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 75/260 (28%), Gaps = 4/260 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
             +  +   T+  +I   +   +          + G  +S+ +        ++A+ Q   
Sbjct: 10  LKNAQSSLGTIAHNIANSETYGFKRGRTEFAEIVAGSALSNPRTIQGIGSSVEAITQNFS 69

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI-- 338
                      +MA    G F+ +    G      G F  +    + +     +      
Sbjct: 70  LGPIEQTGSALDMAITGDGFFTMRGENGGTLYTRAGSFTINESGGIVDNDGNRLQAYAVD 129

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  +    ++   + +    +    +     +   Y D  N+      +A      
Sbjct: 130 ANGDPTSNALQDVQIPVTNAAGAEYAGVTVGSDGVIRASYADGSNQPVGMVALATFMAPN 189

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L     +   W     S +          +  +         V++ EEL  LI  ++++
Sbjct: 190 GLKPVGSS--NWESTGFSGAASYGEPGNGQYGALLSGSLERSNVDIAEELVGLITAQRNF 247

Query: 459 NISNKLIMFTDKMLQTLLEG 478
             + K I    ++ QT++  
Sbjct: 248 QANAKAIDTATQISQTVMNL 267



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 16/145 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55
            F  + N   NA     +I  NI N++   + R  T                      + 
Sbjct: 2   SFYTSLNGLKNAQSSLGTIAHNIANSETYGFKRGRTEFAEIVAGSALSNPRTIQGIGSSV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +  +N     +    SA+        F  +            +          +     
Sbjct: 62  EAITQNFSLGPIEQTGSALDMAITGDGFFTM------RGENGGTLYTRAGSFTINESGGI 115

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNT 140
            +   + L    +D   +   N   
Sbjct: 116 VDNDGNRLQAYAVDANGDPTSNALQ 140


>gi|293414371|ref|ZP_06657020.1| flagellar basal-body rod protein FlgG [Escherichia coli B185]
 gi|291434429|gb|EFF07402.1| flagellar basal-body rod protein FlgG [Escherichia coli B185]
          Length = 260

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 34/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++++   A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISLLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|85058013|ref|YP_453715.1| flagellar basal body rod protein FlgG [Sodalis glossinidius str.
           'morsitans']
 gi|84778533|dbj|BAE73310.1| flagellar basal-body rod protein FlgG [Sodalis glossinidius str.
           'morsitans']
          Length = 260

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 2/176 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  +       F+   + D  N   +  S       Q  ++  +      +     
Sbjct: 87  TNTGNPTDVAIEGSGFLQVLMPDGTNAYTRDGSLQRDQYGQLVTSSGYPIQPAVMIPNGA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N+         +     +  +      +A    +  L     N   + E   S +   +
Sbjct: 147 SNLTISKDGLVSVALPGQTEPQEVGQLNLATFINDAGLQSLGENL--YYETPSSGAPMEN 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                    + + +     VN+ +EL  +I+ +++Y +++K I  +D+MLQ L + 
Sbjct: 205 KPGMNGAGALKQQFLENSNVNVAQELITMIQAQRAYELNSKAISTSDQMLQRLAQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 26/155 (16%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  NI N     + R+  +                    
Sbjct: 1   MMRSLMIAKTGLEAQQTNMDVISNNIANVSTMGFKRQQAVFEDLLYQTVRQPGAKSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L    +          F  +            
Sbjct: 61  TIPSGLQLGTGVRPVATTRIH---LQGGLTNTGNPTDVAIEGSGFLQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +       L+          S   +   V+     
Sbjct: 112 NAYTRDGSLQRDQYGQLVTSSGYPIQPAVMIPNGA 146


>gi|313497764|gb|ADR59130.1| FlgG [Pseudomonas putida BIRD-1]
          Length = 261

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +  +    +      +       F      D      +  +  +  + Q  +   +  
Sbjct: 77  TQKSFVAGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTFHLNSDGQIVTANGYAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100
             P  + V T         +     L    + +      + F  + +      +  + + 
Sbjct: 61  ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +   Y+   +  +          +      T+A           +  +   
Sbjct: 121 HLNSDGQIVTANGYALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
               + + +   +  A            +          + S +  +  +V        Y
Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAY 240

Query: 221 TSDGTTLFE 229
             +   +  
Sbjct: 241 EMNSKVIST 249


>gi|152997580|ref|YP_001342415.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1]
 gi|150838504|gb|ABR72480.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1]
          Length = 261

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 2/181 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +              +       F+     D      +  S  +    Q  ++   +
Sbjct: 76  ATQKDFSNGDYNMTDRQLDIAIQGKGFLQVLQPDGTIAYTRNGSLQLNSQGQLATSGGLV 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            + G      +  +         +    D+  +      +AG      L    +N     
Sbjct: 136 LEPGIQIDPDVIEIMIAEDGIVSVRKNGDADAQQVGAINIAGFINPTGLSSAGQNLFT-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E N S    + +        I++       VN  EEL  +I  +++Y +++K+I   D M
Sbjct: 194 ETNASGPPLVGVPGTDSLGTIAQGMLEASNVNSIEELVNMITTQRAYEMNSKVIASADGM 253

Query: 472 L 472
           +
Sbjct: 254 M 254



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/146 (6%), Positives = 32/146 (21%), Gaps = 33/146 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++   +   +Q   +  N+ N     + +   +                    
Sbjct: 1   MNSALWVSKTGLSAMDKQLNVVANNLANVSTTAFKKDRAVFEDLMYKTVRAPGGLSAQNA 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +   K+  +   +     +      + F  + +          
Sbjct: 61  ELPSGLQLGTGVKVGATQ---KDFSNGDYNMTDRQLDIAIQGKGFLQVLQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILG 124
                   L+ + +         +L 
Sbjct: 112 IAYTRNGSLQLNSQGQLATSGGLVLE 137


>gi|91794993|ref|YP_564644.1| flagellar basal-body rod FlgG [Shewanella denitrificans OS217]
 gi|91716995|gb|ABE56921.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217]
          Length = 261

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++  L Q+   +      ++    +V             +       F      + 
Sbjct: 51  QPGGQVDELNQLPSGLQLGTGTRVAGTQKVFTTGDVHNTSQQLDLAIEGNGFFQVEEPNG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D    +             ++         V  +   N+        +     D+  +  
Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDSTNITIATDGIVMATIAGDAEPQEL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S      +        + +       VN+ E
Sbjct: 171 GQITLINFTNPAGLEARGNNL--YRETAASGVAVEGVAGDQALGGLRQGSLEGSNVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 57/242 (23%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLAAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDELN 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                             K      +H  S  +        F  ++E         +   
Sbjct: 61  QLPSGLQLGTGTRVAGTQKVFTTGDVHNTSQQLDLAIEGNGFFQVEE------PNGDLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   S E          L   ++   +       T    +  I  DA+ +   +I+
Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDSTNITIATDGIVMATIAGDAEPQELGQIT 174

Query: 162 NLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            N+  +   AS          + +   +   + G +  V      ++
Sbjct: 175 LINFTNPAGLEARGNNLYRETAASGVAVEGVAGDQALGGLRQGSLEGSNVNVVEEMVEMI 234

Query: 220 YT 221
            T
Sbjct: 235 ST 236


>gi|254712013|ref|ZP_05173824.1| flagellar basal body rod protein FlgG [Brucella ceti M644/93/1]
 gi|254715082|ref|ZP_05176893.1| flagellar basal body rod protein FlgG [Brucella ceti M13/05/1]
 gi|261216792|ref|ZP_05931073.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1]
 gi|261319659|ref|ZP_05958856.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1]
 gi|260921881|gb|EEX88449.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1]
 gi|261292349|gb|EEX95845.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1]
          Length = 241

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     T                     
Sbjct: 3   ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R           +   +        + +  ++           + 
Sbjct: 63  PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     L  + +   +    + +      + +   K++   ++    ++
Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173

Query: 161 SNLRRF 166
           +     
Sbjct: 174 TLANFT 179


>gi|313682110|ref|YP_004059848.1| flagellar basal-body rod protein flgg [Sulfuricurvum kujiense DSM
           16994]
 gi|313154970|gb|ADR33648.1| flagellar basal-body rod protein FlgG [Sulfuricurvum kujiense DSM
           16994]
          Length = 262

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++      ++   + +       F    + +      +  S  I  N    ++  + 
Sbjct: 76  SINKIFTEGSLKQTDNSLDLAITGKGFFKLELPNGTEVYSRNGSFKIDENGTIVNSDGYK 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V  +   N+         +     +         +        L     N   ++
Sbjct: 136 LVPEVVIPEDATNISIGTDGIVSVTQSGQAQATQVGQISLTSFINPAGLHAMGDNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E + S         +    +I + +     V L  EL+ LI  +++Y+ ++K+I  +D+M
Sbjct: 194 ETDSSGQPIEGTPGENGIGNIRQGFVELSNVQLVVELTDLITGQRAYDANSKVITTSDEM 253

Query: 472 LQTLLEGVK 480
           L T     +
Sbjct: 254 LATTNGLKR 262



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 52/210 (24%), Gaps = 29/210 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     +     +   Q  +   NI N +   Y +                        
Sbjct: 1   MMQSLYTSSTGMLSMQTQIDTTANNIANVNTMGYKKSRAEFADLMYKVMTYAGTSTSDTT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V         NK   +  L    +++      + F  L+              
Sbjct: 61  KSPTGIEVGLGVRPTSINKIFTEGSLKQTDNSLDLAITGKGFFKLE------LPNGTEVY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +        N     L   V+  ++A  +    +      Q  +A A +  ++ 
Sbjct: 115 SRNGSFKIDENGTIVNSDGYKLVPEVVIPEDATNISIGTDGIVSVTQSGQAQATQVGQIS 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           +++         + ++      +S      
Sbjct: 175 LTSFINPAGLHAMGDNLFVETDSSGQPIEG 204


>gi|329297209|ref|ZP_08254545.1| Flagellar basal-body rod protein flgG [Plautia stali symbiont]
          Length = 260

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 2/176 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + N       +    + D  +   +  S  +  N Q  +N  F    G       
Sbjct: 87  SQTSNSKNVAINGQGYFQVQMPDGTSAYTRDGSFQVDQNGQLVTNAGFPVQPGITIPANA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     +         ++    +  L     N   + E   S +    
Sbjct: 147 TSITIARDGVVTVTQQGQTQPAQVGQLTLSTFMNDAGLDSVGENL--YQETQASGAPTES 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              Q     + +SY  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 205 TPGQNGAGLLYQSYVETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLQKLTQL 260



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 56/239 (23%), Gaps = 23/239 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R   +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTLRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVTTERLHNQGNLSQTSNSKNVAINGQGYFQVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              +          +   +    T+  NA  +    +      Q+ +    +  +L +S 
Sbjct: 118 GSFQVDQNGQLVTNAGFPVQPGITIPANATSITIARDGVVTVTQQGQTQPAQVGQLTLST 177

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                   +V  +  +   AS         Q    L   S +   +  V      ++ T
Sbjct: 178 FMNDAGLDSVGENLYQETQASGAPTESTPGQNGAGLLYQSYVETSNVNVAEELVTMIQT 236


>gi|317133480|ref|YP_004092794.1| flagellar hook-basal body protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471459|gb|ADU28063.1| flagellar hook-basal body protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 326

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/275 (8%), Positives = 63/275 (22%)

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
           G            V  S  +    T          N +        +  D    ++   +
Sbjct: 51  GTDNTNATQVGYGVKVSGVSKDMSTTGETTTNVPTNLFINGEGYFIVSTDSASHTAGSTT 110

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                 +        +        L +     +         A  ++      +      
Sbjct: 111 NSSGATVADYYTRVGNFQKNASGYLVDANGNYVMGMDATSLAAYQADPTSLPTLHAISLI 170

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                      +   +    +N +      +        + +  G  +       +    
Sbjct: 171 GATFHPTAAGTSTSSDVTVTANTNISDLTINSDGTISGTIGSSTGTFEYGTSNGATTASA 230

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                VA              +  + +   S S      S      +         V+L 
Sbjct: 231 SDPIIVALATFPNDGGLSQAGNTSFTQSVSSGSPTYIQASNGNSTTLISGALEQSNVDLA 290

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E + +I  ++ +  ++++I   D +L+ ++   +
Sbjct: 291 REFTNMIVTQRGFQANSRVITVADSLLEEIVNLKR 325



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 70/302 (23%), Gaps = 17/302 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
             N A             I  NI N +   +    T  +                     
Sbjct: 3   ALNSAVTGLQAQQTAMDVIGNNIANVNTDGFKASRTDFSDL--------------FYQTL 48

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                ++   Q         + + MS       +    +    +     S + +    G 
Sbjct: 49  QGGTDNTNATQVGYGVKVSGVSKDMSTTGETTTNVPTNLFINGEGYFIVSTDSASHTAGS 108

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
           T   +   V   +          +  +   ++   + +    +       A      + H
Sbjct: 109 TTNSSGATVADYYTRVGN---FQKNASGYLVDANGNYVMGMDATSLAAYQADPTSLPTLH 165

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                           S    ++     N   +   SDGT           FE   S   
Sbjct: 166 AISLIGATFHPTAAGTSTSSDVTVTANTNISDLTINSDGTISGTIGSSTGTFEYGTSNGA 225

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           T+ S    I   + +      + +    +  Q   S  P +    +  +  LI    E+ 
Sbjct: 226 TTASASDPIIVALATFPNDGGLSQAGNTSFTQSVSSGSPTYIQASNGNSTTLISGALEQS 285

Query: 306 PI 307
            +
Sbjct: 286 NV 287


>gi|295111397|emb|CBL28147.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria
           [Synergistetes bacterium SGP1]
          Length = 268

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 2/200 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                            I        IAG +      F     +D      +  +  I  
Sbjct: 71  GTRVTATPSFMTQGHFQITDNKMDWAIAGQTMAGENAFFQVTQQDGTIAYTRAGAWEIDG 130

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  S    L +   V  +   +V+       ++     +  +      +A       L
Sbjct: 131 DGQIVSEDGLLLEPAMVVPENATSVQLTRTGRVMVTIPGQTEPQEIGQLELARFINPAGL 190

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                    +LE + S +  +    Q     + +       V + EE+  +I  +++Y  
Sbjct: 191 RALGDRL--FLETSASGAPIVGQPGQNGMPTVRQGVLEMSNVQVVEEMVGMIIAQRAYEA 248

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           ++K I   D++L+      +
Sbjct: 249 NSKGIQTADELLRIANGLKR 268



 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/174 (7%), Positives = 34/174 (19%), Gaps = 21/174 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     + +           +  N+ N + + Y +R                      +
Sbjct: 1   MLRALWSSASGMIAQQTNLDVVSHNLANVNTQGYKKRRADFEDLLYQVWREPGTPVEPNS 60

Query: 45  ISPENVTVVTQRSEN---KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V V            M         + +      Q+                   
Sbjct: 61  TVPTGVQVGLGTRVTATPSFMTQGHFQITDNKMDWAIAGQTMAGENAFFQVTQQDGTIAY 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                     +    +    +L   ++            + R +  I    + +
Sbjct: 121 TRAGAWEIDGDGQIVSEDGLLLEPAMVVPENATSVQLTRTGRVMVTIPGQTEPQ 174


>gi|84514825|ref|ZP_01002188.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis
           SKA53]
 gi|84510984|gb|EAQ07438.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis
           SKA53]
          Length = 273

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 77/270 (28%), Gaps = 2/270 (0%)

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
            I + +  +   +   S+      T     +    +       ++ +      V S    
Sbjct: 4   TIKSGMATSMFEIAVVSNNVANSGTTAFRKSNTSFSDLYSGGSADSVARLSKGVGSIVDG 63

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                +   LL     +      +   ++     +      I+   +    L     ++ 
Sbjct: 64  TKQSTEQGGLLTRDGVLNLALIGKGMFVSAAPSATAGAIGTISYTRDGEFSLDKDGQLRT 123

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
             N    G    +            +                +     L+  Y  +  + 
Sbjct: 124 STNDFVMGYGPGVTPAEATPLVNLKVPVKKDGDGGAQLTALEIGTDGKLMATYGSAPAEL 183

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +A     + L +       +L  + + +  + +  Q  F  I      T  V+L 
Sbjct: 184 LGTIAIASFPNEIALRQI--GMNRFLATDGAGTPKIGVGGQDGFGMIQSGTLETSNVDLT 241

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            EL+ +I+ +Q ++ S++++     M++ L
Sbjct: 242 IELTDMIRAQQQFSGSSRILQTYSDMIEKL 271



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/208 (6%), Positives = 52/208 (25%), Gaps = 11/208 (5%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------- 59
           F   ++    +  + A +  N+ N+    + + +T  +      +  +    +       
Sbjct: 2   FGTIKSGMATSMFEIAVVSNNVANSGTTAFRKSNTSFSDLYSGGSADSVARLSKGVGSIV 61

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               ++     L      +    + +         +              +     +   
Sbjct: 62  DGTKQSTEQGGLLTRDGVLNLALIGKGMFVSAAPSATAGAIGTISYTRDGEFSLDKDGQL 121

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +  + D +                     V+K      +   LEI    + ++       
Sbjct: 122 RTSTNDFVMGYGPGVTPAEATPLVNLKVPVKKDGDGGAQLTALEIGTDGKLMATYGSAPA 181

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISE 203
            +    A     ++   ++  + + ++ 
Sbjct: 182 ELLGTIAIASFPNEIALRQIGMNRFLAT 209


>gi|307823533|ref|ZP_07653762.1| flagellar basal-body rod protein FlgG [Methylobacter tundripaludum
           SV96]
 gi|307735518|gb|EFO06366.1| flagellar basal-body rod protein FlgG [Methylobacter tundripaludum
           SV96]
          Length = 262

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 2/175 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                +    A +       F+   + + D    +  S  +    Q  ++     +    
Sbjct: 83  TQGNVQPTENALDVAINGRGFLQILMPNGDTNYTRDGSLKLDATGQLVTSGGLTLNPAIT 142

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   +V               +          A       L     N   + E   S 
Sbjct: 143 VPQDALSVTIGTDGTVSALQPGVAAPTVLGQIQTANFINPTGLEAVGENL--YRESAASG 200

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +  +    Q  +  +++    T  VN+ EEL  +I+ +++Y +++K I  TD+ML
Sbjct: 201 APIVGTPGQAEYGTLTQGSLETSNVNVVEELVNMIETQRAYEMNSKAISTTDQML 255



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 46/219 (21%), Gaps = 27/219 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
               A++  +    + A I  N+ N +   + R   +                      P
Sbjct: 5   ALWVAKSGLDAQQTRMAVISNNLANVNTTGFKRGRAVFEDLMYQNIRQVGAQSTQNTQLP 64

Query: 48  ENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             + + T               +    +A+      + F  +           ++     
Sbjct: 65  TGLQLGTGVRTVATEKLHTQGNVQPTENALDVAINGRGFLQIL------MPNGDTNYTRD 118

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
             L+              L   +    + +     T           A   +  +I    
Sbjct: 119 GSLKLDATGQLVTSGGLTLNPAITVPQDALSVTIGTDGTVSALQPGVAAPTVLGQIQTAN 178

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                         ++ ++   A             +++
Sbjct: 179 FINPTGLEAVGENLYRESAASGAPIVGTPGQAEYGTLTQ 217


>gi|221069320|ref|ZP_03545425.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1]
 gi|220714343|gb|EED69711.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1]
          Length = 260

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R  +    ++   A +       F    + D      +  S  +    Q  ++    
Sbjct: 76  ATSRNFLQGSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSFEVDSQGQLVTSSGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G    +    V         +     +  +      ++       L    +N   ++
Sbjct: 136 VANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVGNIAMSQFINAAGLEPRGQNL--YV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S               I + Y     VN+ +EL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTLLEG 478
           L  L + 
Sbjct: 254 LAKLAQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 42/211 (19%), Gaps = 34/211 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+        Q   I  N+ N     Y R + +                    
Sbjct: 1   MINSLFIAKTGMEAQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S+A+        F  +      +     
Sbjct: 61  QLPTGLHLGLGVRTVATSRN---FLQGSLQQSSNALDVAINGNGFFEV------NMPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                        +      S   +     I      V   +     V      A +++ 
Sbjct: 112 IAYTRDGSFEVDSQGQLVTSSGLPVANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVG 171

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               +     + L      +  +TAS     
Sbjct: 172 NIAMSQFINAAGLEPRGQNLYVETASSGQPQ 202


>gi|264676572|ref|YP_003276478.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni
           CNB-2]
 gi|299531284|ref|ZP_07044694.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44]
 gi|262207084|gb|ACY31182.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni
           CNB-2]
 gi|298720691|gb|EFI61638.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44]
          Length = 260

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R  +    ++   A +       F    + D      +  S  +    Q  ++    
Sbjct: 76  ATSRNFLQGSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSFEVDAQGQLVTSSGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G    +    V         +     +  +      ++       L    +N   ++
Sbjct: 136 VANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVGNIAMSQFINAAGLEPRGQNL--YV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S               I + Y     VN+ +EL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTLLEG 478
           L  L + 
Sbjct: 254 LAKLAQL 260



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 42/211 (19%), Gaps = 34/211 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+        Q   I  N+ N     Y R + +                    
Sbjct: 1   MINSLFIAKTGMEAQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S+A+        F  +      +     
Sbjct: 61  QLPTGLHLGLGVRTVATSRN---FLQGSLQQSSNALDVAINGNGFFEV------NMPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                        +      S   +     I      V   +     V      A +++ 
Sbjct: 112 IAYTRDGSFEVDAQGQLVTSSGLPVANGITIPQGATKVSISHDGVVSVTMPGQAAPQQVG 171

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               +     + L      +  +TAS     
Sbjct: 172 NIAMSQFINAAGLEPRGQNLYVETASSGQPQ 202


>gi|149908757|ref|ZP_01897418.1| putative flagellar basal-body rod protein [Moritella sp. PE36]
 gi|149808299|gb|EDM68238.1| putative flagellar basal-body rod protein [Moritella sp. PE36]
          Length = 261

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 2/181 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V             +   +   F        +    +    T+  + Q  ++     
Sbjct: 77  TQKVFTPGSFADTGQELDMAIIGKGFFQVEQVSGEIAYTRNGQFTLNSDSQIVNSDGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      ++   +          +S  ++     +A       L+    N      
Sbjct: 137 VPSIQIPADATSITIGSDGTITAQLAGESAPQDVGQITLASFANPAGLVALGGNLYTETG 196

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +    +  +     I +       V++ EE+  +I  +++Y ++ K++   DKML
Sbjct: 197 S--SGAAQEGVAGEASLGQIKQRGLEGSNVSVVEEMVDMISTQRAYEMNAKVVSAADKML 254

Query: 473 Q 473
           Q
Sbjct: 255 Q 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/180 (6%), Positives = 44/180 (24%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           + +    ++        + + I  N+ N +   + +     +                  
Sbjct: 1   MSSALWTSKTGLAAQDVKMSIIANNLANVNTTGFKKDRVAFSDLFYDIKRQPGALADQNN 60

Query: 47  --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V V                        +    + + F  ++++            
Sbjct: 61  EIPTGVQVGNGVRVTGTQKVFTPGSFADTGQELDMAIIGKGFFQVEQV------SGEIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   + +S   N     L  ++   A+       +      ++  ++  +   +I+
Sbjct: 115 TRNGQFTLNSDSQIVNSDGLPLVPSIQIPADATSITIGSDGTITAQLAGESAPQDVGQIT 174


>gi|157146224|ref|YP_001453543.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC
           BAA-895]
 gi|157083429|gb|ABV13107.1| hypothetical protein CKO_01981 [Citrobacter koseri ATCC BAA-895]
          Length = 260

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANSLSITVGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANSL 147


>gi|306820920|ref|ZP_07454540.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551034|gb|EFM39005.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 270

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 3/169 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +       A  +   D      + +        +       D G V          ++  
Sbjct: 105 DPNAPGEEAKRLYTRDGSFKFSVEDNQLTLVTSQGEKVLTTDDGYVQIPENSKDFAVSQN 164

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +     +                   L     N   ++  + S         +   + 
Sbjct: 165 GTVTAKSAEGELLELGQLKTVTFVNPEGLKAVGSNF--YVPTDNSGEPVQEEN-ETRESK 221

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I + Y     V L +E+  +I  +++Y I++K +   D ML T+ +  +
Sbjct: 222 IYQGYLEMSNVQLVDEMVRMITAQRAYEINSKTVQTADDMLNTINQLKR 270



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 57/269 (21%), Gaps = 28/269 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A +           I  NI N +   +  + T                        
Sbjct: 3   ALWTAASGMKAQQLNVDVISNNISNVNTTGFKAQKTEFKDLLYTYSNPVSNEAKMGQPVN 62

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V  V                  +      +  +   + E  +A           
Sbjct: 63  LQVGHGVMPVATSRI---YTTGSADKTDNPTDLAMVQGNAFFVVEDPNAPGEEAKRLYTR 119

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S+E     L      K +  +   V    N+    V +      K  E E+  L
Sbjct: 120 DGSFKFSVEDNQLTLVTSQGEKVLTTDDGYVQIPENSKDFAVSQNGTVTAKSAEGELLEL 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            +     TV     +   A   + +   D     +Q+ +E               V   D
Sbjct: 180 GQL---KTVTFVNPEGLKAVGSNFYVPTDNSGEPVQEENETRESKIYQGYLEMSNVQLVD 236

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPI 252
                 T  R          T     N I
Sbjct: 237 EMVRMITAQRAYEINSKTVQTADDMLNTI 265


>gi|89075497|ref|ZP_01161908.1| putative polar flagellar FlgG [Photobacterium sp. SKA34]
 gi|89048769|gb|EAR54340.1| putative polar flagellar FlgG [Photobacterium sp. SKA34]
          Length = 262

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+      +   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSTQDTTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
            +    +    TI    Q  ++ S       +          +    ++      +  N+
Sbjct: 110 GNIGYTRNGQFTINSEGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                          +    +N   +L    S            +  I +S   T  VN+
Sbjct: 170 VLGQITTVDFINPGGMEPIGQNL--FLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 43/209 (20%), Gaps = 31/209 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +      ++   +      ++I  N+ NA    + +   +                   T
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60

Query: 45  ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  K          ++A+        F  +           N   
Sbjct: 61  TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVL------LPDGNIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157
               +   + E            +  I    D     V      +  ++  + +      
Sbjct: 115 TRNGQFTINSEGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQVLGQI 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHD 186
             +  +     E    N  +    +    
Sbjct: 175 TTVDFINPGGMEPIGQNLFLPTGASGDPQ 203


>gi|51596013|ref|YP_070204.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           IP 32953]
 gi|153947499|ref|YP_001401288.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           IP 31758]
 gi|170024645|ref|YP_001721150.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           YPIII]
 gi|51589295|emb|CAH20916.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Yersinia pseudotuberculosis IP 32953]
 gi|152958994|gb|ABS46455.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis
           IP 31758]
 gi|169751179|gb|ACA68697.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis
           YPIII]
          Length = 260

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  N   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     N  L     N   + E   S 
Sbjct: 142 IPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENL--YQETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNETTPGLNGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 44/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202


>gi|260767925|ref|ZP_05876859.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972]
 gi|260615955|gb|EEX41140.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972]
 gi|315179628|gb|ADT86542.1| flagellar basal-body rod protein FlgG [Vibrio furnissii NCTC 11218]
          Length = 261

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 77  TQKVFTQGNTQNTGQDLDLAVMGQGFFQIENSDGQIMYSRNGQFHVNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      ++         I    DS  +      +A       L     N   + E
Sbjct: 137 QPQIQVPDDAISLSVGVDGTVTITTAADSTPQELGQITLAKFINPAGLEALGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S + D  +  +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGAADELIAGEDGVGSIKQGVLEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/153 (7%), Positives = 32/153 (20%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                      +    + Q F  ++              
Sbjct: 61  ELPTGVQLGSGVRVVGTQKVFTQGNTQNTGQDLDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
               +   + E    N     L   +    + +
Sbjct: 115 SRNGQFHVNSEGLMVNSQGLPLQPQIQVPDDAI 147


>gi|237731009|ref|ZP_04561490.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2]
 gi|226906548|gb|EEH92466.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2]
          Length = 260

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANSLSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 46/209 (22%), Gaps = 24/209 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +              +   +   A  +              +  A     +++  L 
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANSLSITIGRDGIVSVTQQGQA---APVQVGQLN 174

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     ++I     ++  +    ++
Sbjct: 175 LTTFMNDTGLESIGENLYTETQSSGAPNE 203


>gi|146294548|ref|YP_001184972.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens
           CN-32]
 gi|145566238|gb|ABP77173.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens
           CN-32]
          Length = 261

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++ AL  +   +      ++    ++      +      +       F      + 
Sbjct: 51  QPGGQVDALNNLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D    +             ++         V  +    V   +          ++  ++ 
Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S      +        + +       VN+ E
Sbjct: 171 GQITLVNFTNPSGLEARGDNL--YRETAASGVAVEGVAGDQALGALRQGALEGANVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/185 (7%), Positives = 42/185 (22%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                             K      +   S  +        F  ++E         +   
Sbjct: 61  NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEE------PNGDLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   S E          L   ++   + +     +      ++  +A+ +   +I+
Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDLGQIT 174

Query: 162 NLRRF 166
            +   
Sbjct: 175 LVNFT 179


>gi|218249434|ref|YP_002375273.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7]
 gi|218164622|gb|ACK74683.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7]
          Length = 265

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFINPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        +   +          + + +           F  +            
Sbjct: 61  LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +              +   ++   E +  +   S   +  ++ D   E
Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNILFPEEYIQNSITISKEGIVSVKIDTSNE 168


>gi|123442782|ref|YP_001006759.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089743|emb|CAL12596.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 217

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       F    + D  N   +  S     N Q  ++  F             ++ 
Sbjct: 48  NTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTDQNGQLVTSGGFQIQPAITIPANAMSMT 107

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +     +  +      +A    N  L     N   + E   S + +      
Sbjct: 108 VGRDGIVSVTLPGQTATQQVGQLTLATFINNSGLESVGENL--YQETASSGAPNETTPGL 165

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L + 
Sbjct: 166 NGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLTQL 217


>gi|120597307|ref|YP_961881.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1]
 gi|120557400|gb|ABM23327.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1]
          Length = 261

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++ AL  +   +      ++    ++      +      +       F      + 
Sbjct: 51  QPGGQVDALNNLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D    +             ++         V  +    V   +          ++  ++ 
Sbjct: 111 DLAYTRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S      +        + +       VN+ E
Sbjct: 171 GQITLVNFTNPAGLEARGDNL--YRETAASGVAVEGVAGDQALGALRQGALEGANVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/185 (7%), Positives = 42/185 (22%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                             K      +   S  +        F  ++E         +   
Sbjct: 61  NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEE------PNGDLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   S E          L   ++   + +     +      ++  +A+ +   +I+
Sbjct: 115 TRDGQFYRSSEGMMVTSQGLPLVPNIVIPEDALTVTIASDGVVTAQMAGEAEPQDLGQIT 174

Query: 162 NLRRF 166
            +   
Sbjct: 175 LVNFT 179


>gi|283833628|ref|ZP_06353369.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC
           29220]
 gi|291071311|gb|EFE09420.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC
           29220]
          Length = 260

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 46/209 (22%), Gaps = 24/209 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +              +   +   A  +              +  A     +++  L 
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQA---APVQVGQLN 174

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     ++I     ++  +    ++
Sbjct: 175 LTTFMNDTGLESIGENLYTETQSSGAPNE 203


>gi|237799215|ref|ZP_04587676.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022070|gb|EGI02127.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 192

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 63/191 (32%), Gaps = 14/191 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTV 52
           ++ +   +  N +S    +I  N  N D   Y R+  ++T S                T+
Sbjct: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLSTASAQIALGQGVGYLGTGTTL 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
              R    +  D  L + ++               + + +D       +  ++     ++
Sbjct: 62  SDVRRIYNSYLDTQLQSSTALSADAVAYSGQAGKTDTLLSD--NATGISVQLADFFTKMQ 119

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
             + + ++     + +  A  +   FN+ + ++     + + ++      +    + L  
Sbjct: 120 GIATSATQSAERSSFLTQASALSARFNSVSSQLSTQNDNVNSQLNTYTKQVNELTTTLAS 179

Query: 173 VNDAIKFKTAS 183
           +N  I   +A 
Sbjct: 180 LNKQITQASAG 190


>gi|145297456|ref|YP_001140297.1| lateral flagellar basal-body rod protein LfgG [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850228|gb|ABO88549.1| lateral flagellar basal-body rod protein LfgG [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 261

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 3/127 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGINTNVTLLEYAR 405
           N   L     +         ++     +         N       +        L     
Sbjct: 130 NSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELGRITLTNFTNPAGLEALGG 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   +     S      +  +     I +    +  VN+ EE+  +I  +++Y ++ K++
Sbjct: 190 NL--YRATGASGEAIEGVPGEEAMGAIKQFTLESSNVNVVEEMVDMITTQRAYEMNAKVV 247

Query: 466 MFTDKML 472
              D+ML
Sbjct: 248 SAADQML 254



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/199 (8%), Positives = 41/199 (20%), Gaps = 36/199 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ASI  N+ N +   + R                        
Sbjct: 1   MHAALWVSKTGLSAQDAKMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +              +  +    +   F         +     
Sbjct: 61  LSPIGIQMGNGVRVVGTQKV---FTPGQFQNTNQELDMAVVGAGF------FGVERPDGE 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155
           +      +   + E    N     +   +          +    T +  +   + + +  
Sbjct: 112 TAYTRNGQWHRNAEGLLVNSDGLPMLPQIQIPDNATKVSIGTDGTVSATLPGQQENVELG 171

Query: 156 IELEISNLRRFLSELTVVN 174
                +       E    N
Sbjct: 172 RITLTNFTNPAGLEALGGN 190


>gi|302390533|ref|YP_003826354.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani
           DSM 16646]
 gi|302201161|gb|ADL08731.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani
           DSM 16646]
          Length = 268

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 1/158 (0%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D      I                  D   +S        N++    +     D  
Sbjct: 112 AFTRDGSFKVSIDGDDRYLVTSEGYYVLDTDEDYISIPEDLTDINISANGTITGRDADGN 171

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +A       LL    N       +  +       ++  F  I + +     V
Sbjct: 172 IEEIGTIALARFLNPEGLLAVGNNLFEQTAASG-EYQLKEDPNEPGFGTILQGFLEMSNV 230

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  LI  +++Y I+ K I   D+ML       +
Sbjct: 231 QVVDEMVNLIVAQRAYEINTKAIQTADEMLGQANNLRR 268



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/185 (7%), Positives = 41/185 (22%), Gaps = 37/185 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +           I  N+ N +   Y +                        
Sbjct: 1   MMRALWSASSGMLAQQLNVDVISNNLANVNTTGYKKSRVEFKDLLYETLRRPDVFQPGQG 60

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V   +         +  L    +        + F  ++          + 
Sbjct: 61  NPVGLQVGHGVRPASTTR---FFTEGNLQQTGNTFDLAIEGEGFFVVE------RPDGSR 111

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   + S++       +  L  +      +  +++ +   ++  I   A+  I   
Sbjct: 112 AFTRDGSFKVSIDG-----DDRYLVTSEGYYVLDTDEDYISIPEDLTDINISANGTITGR 166

Query: 160 ISNLR 164
            ++  
Sbjct: 167 DADGN 171


>gi|90579911|ref|ZP_01235719.1| putative polar flagellar FlgG [Vibrio angustum S14]
 gi|90438796|gb|EAS63979.1| putative polar flagellar FlgG [Vibrio angustum S14]
          Length = 262

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+      +   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSTQDTTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
            +    +    TI    Q  ++ S       +          +    ++      +  N+
Sbjct: 110 GNIGYTRNGQFTINSEGQLVTSGSGYPVQPEIVVPDDAVGITVGTDGEVSARIRGEQENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                          +    +N   +L    S            +  I +S   T  VN+
Sbjct: 170 VLGQITTVDFINPGGMEPIGQNL--FLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 43/209 (20%), Gaps = 31/209 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +      ++   +      ++I  N+ NA    + +   +                   T
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60

Query: 45  ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  K          ++A+        F  +           N   
Sbjct: 61  TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVL------LPDGNIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157
               +   + E            +  I    D     V      +  ++  + +      
Sbjct: 115 TRNGQFTINSEGQLVTSGSGYPVQPEIVVPDDAVGITVGTDGEVSARIRGEQENQVLGQI 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHD 186
             +  +     E    N  +    +    
Sbjct: 175 TTVDFINPGGMEPIGQNLFLPTGASGDPQ 203


>gi|83646774|ref|YP_435209.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396]
 gi|83634817|gb|ABC30784.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396]
          Length = 660

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/331 (9%), Positives = 88/331 (26%), Gaps = 8/331 (2%)

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
           K+++   +     +     +N  +        +  D +    +        I +    + 
Sbjct: 332 KDLKENPAKPTAKVQAFGNLNPELADFANFPAEGEDPISFEVMQSNGEKLQINMEFTKQA 391

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV----PK 269
            N   V   D      + P  +NF+        S +    I     ++            
Sbjct: 392 ANVWNVTLRDTEGELVSGPYSLNFDSNGILAAESRTFSASIPDSDDTALSVELKLYESDS 451

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
             +   + + D V P+   +   +   +         ++ ++ N         +      
Sbjct: 452 KSLTQKVDVTDGVSPVADGKEKGLLEKVTFDEKGVAHLSYSNGNTAEGPRIALVDRGTEA 511

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                     +      N   + D     +       +      +   Y +   K     
Sbjct: 512 SANFDLSLSGLTSLSGVNSVEVSDV-DGFEAGRVTEFSFQEDGVIAFKYSNGQEKTGPQV 570

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +A       L     +              +   +   F  +         V L  E +
Sbjct: 571 AMANFLNVNALTSEGGSLFS---AGEDAGITVGAANSGGFGKVKGESIELSNVELSREFA 627

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +I +++ Y  S++++  +++M++ L   V+
Sbjct: 628 EIIIIQRGYQASSQVMNVSNEMIENLYNSVR 658


>gi|126668560|ref|ZP_01739514.1| Flagellar basal body rod protein [Marinobacter sp. ELB17]
 gi|126626965|gb|EAZ97608.1| Flagellar basal body rod protein [Marinobacter sp. ELB17]
          Length = 262

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 51/185 (27%), Gaps = 2/185 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F+   + D      +     +  +    +   +  
Sbjct: 77  TVKQFTQGNLQITEQPLDMAVNGRGFLQVQLPDGQTAYTRDGQFQLNSDGDVVNPSGYAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +      +   NV               +   N     +        L     N   + +
Sbjct: 137 EPNINIPENATNVTIGRDGTVTAVTDDQAAPINLGQITLVDFINPQGLQAIGNNL--FKQ 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N S               + +    +  V + EEL  +I  +++Y +++K++   D+ML
Sbjct: 195 TNASGDPTEGEPGLAGLGSLEQGSIESSNVEVVEELVNMITTQRAYEMNSKVVSTVDQML 254

Query: 473 QTLLE 477
           Q +  
Sbjct: 255 QFITN 259



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/196 (7%), Positives = 39/196 (19%), Gaps = 30/196 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +      ++   +      ++I  N+ N +   + R   +       V            
Sbjct: 1   MNPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQVKRQPGGLNTQNT 60

Query: 52  --------VVTQRSENK--NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R            L      +      + F  ++           +  
Sbjct: 61  ELPSGLQLGTGVRVVGTVKQFTQGNLQITEQPLDMAVNGRGFLQVQ------LPDGQTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
               + + + +    N S   L        +     +    T         A  +     
Sbjct: 115 TRDGQFQLNSDGDVVNPSGYALEPNINIPENATNVTIGRDGTVTAVTDDQAAPINLGQIT 174

Query: 159 EISNLRRFLSELTVVN 174
            +  +     +    N
Sbjct: 175 LVDFINPQGLQAIGNN 190


>gi|332994160|gb|AEF04215.1| flagellar basal body rod protein FlgG [Alteromonas sp. SN2]
          Length = 262

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 71/213 (33%), Gaps = 3/213 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+  A  ++   ++    +++    +            A +       +      D
Sbjct: 50  NQPGGRSSADTELPSGLMLGSGSKVVSTQKAHTQGNLLTTDNALDMSIQGRGYFEILQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    ++    Q  ++ +       V+         ++   ++       +  +
Sbjct: 110 GTIAYSRNGQFSMNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +    +        I++    T  VN+
Sbjct: 170 VLGQMNLSDFINPTGLQPIGQNL--YVETASSGAPIQGVPGLQGIGTIAQGTLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            EEL  LI+ ++ Y +++K+I   D+ML  +++
Sbjct: 228 TEELVNLIESQRLYEMNSKVISSVDQMLGQVIQ 260



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/168 (7%), Positives = 39/168 (23%), Gaps = 33/168 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   + A    A +  N+ NA    + +   +                    
Sbjct: 1   MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        VV+ +  +       L    +A+      + +  + +          
Sbjct: 61  ELPSGLMLGSGSKVVSTQKAH---TQGNLLTTDNALDMSIQGRGYFEILQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                  +   + +          L +  +   E+  Q   +   E+ 
Sbjct: 112 IAYSRNGQFSMNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEIS 159


>gi|186895116|ref|YP_001872228.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           PB1/+]
 gi|186698142|gb|ACC88771.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis
           PB1/+]
          Length = 260

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  N   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +  +      +     N  L     N   + E   S 
Sbjct: 142 IPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTIFINNSGLESVGENL--YQETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNETTPGLNGGGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 43/205 (20%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           +     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +   V      +  +Q   A           
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTI 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N   +  ++   +
Sbjct: 178 FINNSGLESVGENLYQETASSGAPN 202


>gi|225551864|ref|ZP_03772807.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1]
 gi|225371659|gb|EEH01086.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1]
          Length = 265

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            ++         ++       L     N   + E   S      +        + +    
Sbjct: 165 NNNEPIELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILE 222

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V++ EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 223 MSNVSIAEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        +   +          + + +           F  +            
Sbjct: 61  LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +              +   +    E +  +   S   +  ++ D + E
Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIQNSIAISEEGIVSVKIDNNNE 168


>gi|331652131|ref|ZP_08353150.1| flagellar basal-body rod protein FlgG [Escherichia coli M718]
 gi|331050409|gb|EGI22467.1| flagellar basal-body rod protein FlgG [Escherichia coli M718]
          Length = 260

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +        L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNETGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 47/209 (22%), Gaps = 24/209 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +              +   +   A  +              +  A     +++  L 
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQA---APVQVGQLN 174

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     ++I     ++  +    ++
Sbjct: 175 LTTFMNETGLESIGENLYTETQSSGAPNE 203


>gi|216263448|ref|ZP_03435443.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1]
 gi|215980292|gb|EEC21113.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1]
          Length = 265

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSKGMGKLRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          ++     A +          +I  N+ N +   + +               TQ       
Sbjct: 1  MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56

Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89
           +  L    + +G    + + + + E 
Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83


>gi|28211309|ref|NP_782253.1| flagellar basal body rod protein FlgG [Clostridium tetani E88]
 gi|28203749|gb|AAO36190.1| flagellar basal-body rod protein flgG [Clostridium tetani E88]
          Length = 285

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 31/134 (23%), Gaps = 12/134 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54
           +L V    ++      ++  +I  NI N + + Y R+D                 V    
Sbjct: 1   MLRVLWSGRSAMYAQQEKLDAISNNIANVNTEGYKRQDVSFQDLMNETLDRRGYPVNEEG 60

Query: 55  QRSENKNMFDKV----LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            R+       K            +        F             +             
Sbjct: 61  NRNLIHGTGVKTGPWIRDNTQGTLNNTGSSTDFAIDGNGYFKVFSNDKEYYIRAGNFNLD 120

Query: 111 LESYSKNLSEDILG 124
            +    + + +IL 
Sbjct: 121 NKGNLVDKNGNILE 134



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 27/53 (50%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               +  + V + + + Y     V +++E+S +I  ++++  S++ +   D+M
Sbjct: 223 PVQGVNPEAVNSDVLQGYVERSNVRMEKEMSDMIVSQRAFEFSSRAVKAADEM 275


>gi|15595119|ref|NP_212908.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi B31]
 gi|195941595|ref|ZP_03086977.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi 80a]
 gi|216264940|ref|ZP_03436932.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a]
 gi|221217835|ref|ZP_03589302.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a]
 gi|223889350|ref|ZP_03623936.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b]
 gi|224532949|ref|ZP_03673558.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi
           WI91-23]
 gi|224533277|ref|ZP_03673871.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi
           CA-11.2a]
 gi|225548956|ref|ZP_03769933.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a]
 gi|225549893|ref|ZP_03770854.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a]
 gi|226320636|ref|ZP_03796195.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805]
 gi|226321474|ref|ZP_03797001.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26]
 gi|3913655|sp|O51715|FLGG_BORBU RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|2688724|gb|AAC67132.1| flagellar basal-body rod protein (flgG) [Borrelia burgdorferi B31]
 gi|215981413|gb|EEC22220.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a]
 gi|221192141|gb|EEE18361.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a]
 gi|223885036|gb|EEF56140.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b]
 gi|224512113|gb|EEF82505.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi
           WI91-23]
 gi|224513442|gb|EEF83799.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi
           CA-11.2a]
 gi|225369352|gb|EEG98804.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a]
 gi|225370559|gb|EEG99995.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a]
 gi|226233270|gb|EEH32022.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26]
 gi|226233959|gb|EEH32681.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805]
 gi|312149206|gb|ADQ29277.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi N40]
          Length = 265

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFINPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        +   +          + + +           F  +            
Sbjct: 61  LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +              +   ++   E +  +   S   +  ++ D   E
Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNILFPEEYIQNSITISEEGIVSVKIDTSNE 168


>gi|315127351|ref|YP_004069354.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp.
           SM9913]
 gi|315015865|gb|ADT69203.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp.
           SM9913]
          Length = 262

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++     ++    +            + +       F      D
Sbjct: 50  NQPGGRSSQDTEMPSGLMLGAGTKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
            +    +    T     +  ++ +       ++         ++   ++       + N 
Sbjct: 110 GNIAYSRNGQFTTDGEGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVSVRIKGQAENV 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N     E   S +             I +    T  VN+
Sbjct: 170 VIGQITISDFINPSGLEPIGQNLYT--ETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+M+
Sbjct: 228 TEELVNLIETQRVYEMNSKVISAVDEMM 255



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/165 (7%), Positives = 36/165 (21%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      + I  N+ NA    Y +   +                    
Sbjct: 1   MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60

Query: 46  -SPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  KN     +    +++        F  + +         N   
Sbjct: 61  EMPSGLMLGAGTKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQ------PDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +     E          + +  ++  ++      +   EV 
Sbjct: 115 SRNGQFTTDGEGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVS 159


>gi|15801195|ref|NP_287212.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           EDL933]
 gi|15830710|ref|NP_309483.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           str. Sakai]
 gi|16129041|ref|NP_415596.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26247218|ref|NP_753258.1| flagellar basal body rod protein FlgG [Escherichia coli CFT073]
 gi|89107924|ref|AP_001704.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli str. K-12 substr. W3110]
 gi|91210230|ref|YP_540216.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89]
 gi|110641254|ref|YP_668984.1| flagellar basal body rod protein FlgG [Escherichia coli 536]
 gi|110805095|ref|YP_688615.1| flagellar basal body rod protein FlgG [Shigella flexneri 5 str.
           8401]
 gi|117623264|ref|YP_852177.1| flagellar basal body rod protein FlgG [Escherichia coli APEC O1]
 gi|157156521|ref|YP_001462312.1| flagellar basal body rod protein FlgG [Escherichia coli E24377A]
 gi|168747146|ref|ZP_02772168.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4113]
 gi|168758629|ref|ZP_02783636.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4401]
 gi|168764490|ref|ZP_02789497.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4501]
 gi|168767737|ref|ZP_02792744.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4486]
 gi|168773923|ref|ZP_02798930.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4196]
 gi|168783608|ref|ZP_02808615.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4076]
 gi|168790013|ref|ZP_02815020.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC869]
 gi|168802023|ref|ZP_02827030.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC508]
 gi|170080729|ref|YP_001730049.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170679890|ref|YP_001744102.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5]
 gi|188492805|ref|ZP_03000075.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638]
 gi|191168453|ref|ZP_03030241.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A]
 gi|191172450|ref|ZP_03033991.1| flagellar basal-body rod protein FlgG [Escherichia coli F11]
 gi|193064556|ref|ZP_03045636.1| flagellar basal-body rod protein FlgG [Escherichia coli E22]
 gi|193069501|ref|ZP_03050455.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019]
 gi|194438123|ref|ZP_03070216.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1]
 gi|195935468|ref|ZP_03080850.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           str. EC4024]
 gi|208806632|ref|ZP_03248969.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4206]
 gi|208815071|ref|ZP_03256250.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4045]
 gi|208822750|ref|ZP_03263069.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4042]
 gi|209399139|ref|YP_002269924.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4115]
 gi|209918332|ref|YP_002292416.1| flagellar basal body rod protein FlgG [Escherichia coli SE11]
 gi|215486287|ref|YP_002328718.1| flagellar basal body rod protein FlgG [Escherichia coli O127:H6
           str. E2348/69]
 gi|217328263|ref|ZP_03444345.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. TW14588]
 gi|218553656|ref|YP_002386569.1| flagellar basal body rod protein FlgG [Escherichia coli IAI1]
 gi|218557960|ref|YP_002390873.1| flagellar basal body rod protein FlgG [Escherichia coli S88]
 gi|218694612|ref|YP_002402279.1| flagellar basal body rod protein FlgG [Escherichia coli 55989]
 gi|218700419|ref|YP_002408048.1| flagellar basal body rod protein FlgG [Escherichia coli IAI39]
 gi|218704486|ref|YP_002412005.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026]
 gi|227886564|ref|ZP_04004369.1| flagellar basal body rod protein FlgG [Escherichia coli 83972]
 gi|237706936|ref|ZP_04537417.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA]
 gi|238900332|ref|YP_002926128.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli BW2952]
 gi|253773898|ref|YP_003036729.1| flagellar basal body rod protein FlgG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161184|ref|YP_003044292.1| flagellar basal body rod protein FlgG [Escherichia coli B str.
           REL606]
 gi|254792460|ref|YP_003077297.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           str. TW14359]
 gi|256018665|ref|ZP_05432530.1| flagellar basal body rod protein FlgG [Shigella sp. D9]
 gi|256023224|ref|ZP_05437089.1| flagellar basal body rod protein FlgG [Escherichia sp. 4_1_40B]
 gi|260843318|ref|YP_003221096.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O103:H2 str. 12009]
 gi|260854561|ref|YP_003228452.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O26:H11 str. 11368]
 gi|260867441|ref|YP_003233843.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O111:H- str. 11128]
 gi|261227017|ref|ZP_05941298.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256251|ref|ZP_05948784.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282098|ref|YP_003498916.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str.
           CB9615]
 gi|293404362|ref|ZP_06648356.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412]
 gi|293409444|ref|ZP_06653020.1| flagellar basal-body rod protein FlgG [Escherichia coli B354]
 gi|293433368|ref|ZP_06661796.1| flagellar basal-body rod protein FlgG [Escherichia coli B088]
 gi|297516691|ref|ZP_06935077.1| flagellar basal body rod protein FlgG [Escherichia coli OP50]
 gi|298380142|ref|ZP_06989747.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302]
 gi|300816780|ref|ZP_07097000.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1]
 gi|300821141|ref|ZP_07101290.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7]
 gi|300899597|ref|ZP_07117836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1]
 gi|300902469|ref|ZP_07120451.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1]
 gi|300918680|ref|ZP_07135261.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1]
 gi|300922604|ref|ZP_07138704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1]
 gi|300928370|ref|ZP_07143904.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1]
 gi|300938643|ref|ZP_07153372.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1]
 gi|300950173|ref|ZP_07164118.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1]
 gi|300954382|ref|ZP_07166836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1]
 gi|300974382|ref|ZP_07172594.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1]
 gi|300982619|ref|ZP_07176203.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1]
 gi|301023265|ref|ZP_07187062.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1]
 gi|301029707|ref|ZP_07192761.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1]
 gi|301051138|ref|ZP_07197968.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1]
 gi|301304983|ref|ZP_07211085.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1]
 gi|301328552|ref|ZP_07221613.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1]
 gi|301644990|ref|ZP_07244956.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1]
 gi|306814073|ref|ZP_07448246.1| flagellar basal body rod protein FlgG [Escherichia coli NC101]
 gi|307137713|ref|ZP_07497069.1| flagellar basal body rod protein FlgG [Escherichia coli H736]
 gi|307310144|ref|ZP_07589794.1| flagellar basal-body rod protein FlgG [Escherichia coli W]
 gi|309798072|ref|ZP_07692447.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7]
 gi|312968848|ref|ZP_07783055.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75]
 gi|331641622|ref|ZP_08342757.1| flagellar basal-body rod protein FlgG [Escherichia coli H736]
 gi|331646336|ref|ZP_08347439.1| flagellar basal-body rod protein FlgG [Escherichia coli M605]
 gi|331657140|ref|ZP_08358102.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206]
 gi|331662484|ref|ZP_08363407.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143]
 gi|331667478|ref|ZP_08368342.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271]
 gi|331672598|ref|ZP_08373387.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280]
 gi|331676869|ref|ZP_08377565.1| flagellar basal-body rod protein FlgG [Escherichia coli H591]
 gi|331682580|ref|ZP_08383199.1| flagellar basal-body rod protein FlgG [Escherichia coli H299]
 gi|332279734|ref|ZP_08392147.1| flagellar basal-body rod protein FlgG [Shigella sp. D9]
 gi|78100014|sp|P0ABX7|FLGG_ECO57 RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|78100015|sp|P0ABX6|FLGG_ECOL6 RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|78100016|sp|P0ABX5|FLGG_ECOLI RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|12514619|gb|AAG55824.1|AE005318_1 flagellar biosynthesis, cell-distal portion of basal-body rod
           [Escherichia coli O157:H7 str. EDL933]
 gi|26107619|gb|AAN79818.1|AE016759_92 Flagellar basal-body rod protein flgG [Escherichia coli CFT073]
 gi|1787318|gb|AAC74162.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli str. K-12 substr. MG1655]
 gi|4062656|dbj|BAA35887.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli str. K12 substr. W3110]
 gi|13360920|dbj|BAB34879.1| flagellar basal body rod protein flgG [Escherichia coli O157:H7
           str. Sakai]
 gi|91071804|gb|ABE06685.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89]
 gi|110342846|gb|ABG69083.1| flagellar basal-body rod protein FlgG [Escherichia coli 536]
 gi|110614643|gb|ABF03310.1| flagellar basal-body rod protein FlgG [Shigella flexneri 5 str.
           8401]
 gi|115512388|gb|ABJ00463.1| flagellar basal-body rod protein FlgG [Escherichia coli APEC O1]
 gi|157078551|gb|ABV18259.1| flagellar basal-body rod protein FlgG [Escherichia coli E24377A]
 gi|169888564|gb|ACB02271.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170517608|gb|ACB15786.1| flagellar basal-body rod protein FlgG [Escherichia coli SMS-3-5]
 gi|187770380|gb|EDU34224.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4196]
 gi|188018193|gb|EDU56315.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4113]
 gi|188488004|gb|EDU63107.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638]
 gi|188999095|gb|EDU68081.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4076]
 gi|189354587|gb|EDU73006.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4401]
 gi|189363057|gb|EDU81476.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4486]
 gi|189365523|gb|EDU83939.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4501]
 gi|189370495|gb|EDU88911.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC869]
 gi|189375944|gb|EDU94360.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC508]
 gi|190901472|gb|EDV61233.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A]
 gi|190907334|gb|EDV66932.1| flagellar basal-body rod protein FlgG [Escherichia coli F11]
 gi|192927808|gb|EDV82422.1| flagellar basal-body rod protein FlgG [Escherichia coli E22]
 gi|192957249|gb|EDV87698.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019]
 gi|194423059|gb|EDX39053.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1]
 gi|208726433|gb|EDZ76034.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4206]
 gi|208731719|gb|EDZ80407.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4045]
 gi|208738235|gb|EDZ85918.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4042]
 gi|209160539|gb|ACI37972.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC4115]
 gi|209773358|gb|ACI84991.1| flagellar basal body rod protein flgG [Escherichia coli]
 gi|209773360|gb|ACI84992.1| flagellar basal body rod protein flgG [Escherichia coli]
 gi|209773362|gb|ACI84993.1| flagellar basal body rod protein flgG [Escherichia coli]
 gi|209773364|gb|ACI84994.1| flagellar basal body rod protein flgG [Escherichia coli]
 gi|209773366|gb|ACI84995.1| flagellar basal body rod protein flgG [Escherichia coli]
 gi|209911591|dbj|BAG76665.1| flagellar basal-body rod protein FlgG [Escherichia coli SE11]
 gi|215264359|emb|CAS08716.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217318690|gb|EEC27116.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. TW14588]
 gi|218351344|emb|CAU97050.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli 55989]
 gi|218360424|emb|CAQ97978.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli IAI1]
 gi|218364729|emb|CAR02419.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli S88]
 gi|218370405|emb|CAR18212.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli IAI39]
 gi|218431583|emb|CAR12462.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli UMN026]
 gi|222032831|emb|CAP75570.1| flagellar basal-body rod protein flgG [Escherichia coli LF82]
 gi|226898146|gb|EEH84405.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA]
 gi|227836768|gb|EEJ47234.1| flagellar basal body rod protein FlgG [Escherichia coli 83972]
 gi|238861100|gb|ACR63098.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli BW2952]
 gi|242376882|emb|CAQ31599.1| flagellar basal-body rod protein FlgG, subunit of Flagellar Motor
           Complex and Flagellum [Escherichia coli BL21(DE3)]
 gi|253324942|gb|ACT29544.1| flagellar basal-body rod protein FlgG [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973085|gb|ACT38756.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli B str. REL606]
 gi|253977299|gb|ACT42969.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli BL21(DE3)]
 gi|254591860|gb|ACT71221.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli O157:H7 str. TW14359]
 gi|257753210|dbj|BAI24712.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O26:H11 str. 11368]
 gi|257758465|dbj|BAI29962.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O103:H2 str. 12009]
 gi|257763797|dbj|BAI35292.1| flagellar component FlgG of cell-distal portion of basal-body rod
           [Escherichia coli O111:H- str. 11128]
 gi|260449782|gb|ACX40204.1| flagellar basal-body rod protein FlgG [Escherichia coli DH1]
 gi|281178187|dbj|BAI54517.1| flagellar basal-body rod protein FlgG [Escherichia coli SE15]
 gi|284920901|emb|CBG33964.1| flagellar basal-body rod protein FlgG [Escherichia coli 042]
 gi|290761971|gb|ADD55932.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str.
           CB9615]
 gi|291324187|gb|EFE63609.1| flagellar basal-body rod protein FlgG [Escherichia coli B088]
 gi|291428948|gb|EFF01973.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412]
 gi|291469912|gb|EFF12396.1| flagellar basal-body rod protein FlgG [Escherichia coli B354]
 gi|294490415|gb|ADE89171.1| flagellar basal-body rod protein FlgG [Escherichia coli IHE3034]
 gi|298279840|gb|EFI21348.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302]
 gi|299877395|gb|EFI85606.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1]
 gi|300297159|gb|EFJ53544.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1]
 gi|300307084|gb|EFJ61604.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1]
 gi|300318618|gb|EFJ68402.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1]
 gi|300356868|gb|EFJ72738.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1]
 gi|300397110|gb|EFJ80648.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1]
 gi|300405501|gb|EFJ89039.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1]
 gi|300410625|gb|EFJ94163.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1]
 gi|300414174|gb|EFJ97484.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1]
 gi|300421081|gb|EFK04392.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1]
 gi|300450520|gb|EFK14140.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1]
 gi|300456428|gb|EFK19921.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1]
 gi|300463628|gb|EFK27121.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1]
 gi|300526440|gb|EFK47509.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7]
 gi|300530554|gb|EFK51616.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1]
 gi|300839701|gb|EFK67461.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1]
 gi|300844944|gb|EFK72704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1]
 gi|301076719|gb|EFK91525.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1]
 gi|305852710|gb|EFM53158.1| flagellar basal body rod protein FlgG [Escherichia coli NC101]
 gi|306909862|gb|EFN40356.1| flagellar basal-body rod protein FlgG [Escherichia coli W]
 gi|307553080|gb|ADN45855.1| flagellar basal-body rod protein FlgG [Escherichia coli ABU 83972]
 gi|308118355|gb|EFO55617.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7]
 gi|309701350|emb|CBJ00651.1| flagellar basal-body rod protein FlgG [Escherichia coli ETEC
           H10407]
 gi|312286250|gb|EFR14163.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75]
 gi|312945640|gb|ADR26467.1| flagellar basal body rod protein FlgG [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315060356|gb|ADT74683.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli W]
 gi|315135710|dbj|BAJ42869.1| flagellar basal-body rod protein flgG [Escherichia coli DH1]
 gi|315253879|gb|EFU33847.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 85-1]
 gi|315287367|gb|EFU46778.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 110-3]
 gi|315291072|gb|EFU50435.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 153-1]
 gi|315296709|gb|EFU56004.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 16-3]
 gi|315618248|gb|EFU98838.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431]
 gi|320189761|gb|EFW64417.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. EC1212]
 gi|320196440|gb|EFW71063.1| Flagellar basal-body rod protein FlgG [Escherichia coli WV_060327]
 gi|320200974|gb|EFW75558.1| Flagellar basal-body rod protein FlgG [Escherichia coli EC4100B]
 gi|320637529|gb|EFX07329.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           str. G5101]
 gi|320643090|gb|EFX12291.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H-
           str. 493-89]
 gi|320648548|gb|EFX17203.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H-
           str. H 2687]
 gi|320653862|gb|EFX21936.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659342|gb|EFX26911.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664477|gb|EFX31628.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           str. LSU-61]
 gi|323156885|gb|EFZ43019.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14]
 gi|323163703|gb|EFZ49523.1| flagellar basal-body rod protein FlgG [Escherichia coli E128010]
 gi|323175691|gb|EFZ61285.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180]
 gi|323185799|gb|EFZ71160.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357]
 gi|323190590|gb|EFZ75862.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1]
 gi|323379083|gb|ADX51351.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11]
 gi|323937818|gb|EGB34082.1| flagellar basal-body rod protein FlgG [Escherichia coli E1520]
 gi|323942547|gb|EGB38714.1| flagellar basal-body rod protein FlgG [Escherichia coli E482]
 gi|323947620|gb|EGB43624.1| flagellar basal-body rod protein FlgG [Escherichia coli H120]
 gi|323953236|gb|EGB49102.1| flagellar basal-body rod protein FlgG [Escherichia coli H252]
 gi|323957902|gb|EGB53614.1| flagellar basal-body rod protein FlgG [Escherichia coli H263]
 gi|323962677|gb|EGB58255.1| flagellar basal-body rod protein FlgG [Escherichia coli H489]
 gi|323967019|gb|EGB62445.1| flagellar basal-body rod protein FlgG [Escherichia coli M863]
 gi|323973333|gb|EGB68522.1| flagellar basal-body rod protein FlgG [Escherichia coli TA007]
 gi|323976549|gb|EGB71637.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509]
 gi|324007918|gb|EGB77137.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 57-2]
 gi|324013352|gb|EGB82571.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 60-1]
 gi|324017418|gb|EGB86637.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 117-3]
 gi|324117351|gb|EGC11258.1| flagellar basal-body rod protein FlgG [Escherichia coli E1167]
 gi|326339300|gb|EGD63114.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. 1125]
 gi|326344739|gb|EGD68487.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7
           str. 1044]
 gi|327253477|gb|EGE65115.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v]
 gi|330910892|gb|EGH39402.1| flagellar basal-body rod protein FlgG [Escherichia coli AA86]
 gi|331038420|gb|EGI10640.1| flagellar basal-body rod protein FlgG [Escherichia coli H736]
 gi|331045088|gb|EGI17215.1| flagellar basal-body rod protein FlgG [Escherichia coli M605]
 gi|331055388|gb|EGI27397.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206]
 gi|331060906|gb|EGI32870.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143]
 gi|331065063|gb|EGI36958.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271]
 gi|331070241|gb|EGI41607.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280]
 gi|331075558|gb|EGI46856.1| flagellar basal-body rod protein FlgG [Escherichia coli H591]
 gi|331080211|gb|EGI51390.1| flagellar basal-body rod protein FlgG [Escherichia coli H299]
 gi|332102086|gb|EGJ05432.1| flagellar basal-body rod protein FlgG [Shigella sp. D9]
 gi|333004888|gb|EGK24408.1| flagellar basal-body rod protein FlgG [Shigella flexneri VA-6]
          Length = 260

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|253827676|ref|ZP_04870561.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491]
 gi|253511082|gb|EES89741.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491]
          Length = 765

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/433 (10%), Positives = 115/433 (26%), Gaps = 25/433 (5%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES---YSKNLSEDILGKTVID 129
           +   + L  +F++  E  + + +Y N        +          + N  ++    T++D
Sbjct: 332 STNNETLESAFQSQVETFTENTNYPNGAYVNYGGIIFQKNGEGQDAGNPIDNPESWTLVD 391

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           + +      N+   E   I  +                 E   +      +         
Sbjct: 392 STKVANYKENSEYNEGDFIVYEGKIYQRSNEPITMVEDPETGELIAQNPAEDTIGWKEIG 451

Query: 190 FLDQRDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
              +  +   +       +  +  N          G T              +S   T  
Sbjct: 452 ENSRGMITEYEAGTTYEENAMVTLNGILYQKTNGAGDTNPLEDASGWRILMTDSLDSTQL 511

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR--------VLIGS 300
           +   +     V S+ G          LL+  D       N+  E+           +I  
Sbjct: 512 NVATYETNTEVYSDSGEKFILKSQYILLEQGDQTATPPINERWEVKSAIYDNTGKTMISE 571

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVS 358
                 I+ N++  P     +      +                 +  + +        +
Sbjct: 572 NPVFSEISFNADGTPNAEPFEVAFQNGSIQVNLAQSDDGKFSSNFAYTDSALKSATQDGT 631

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
              + N   +     ++ ++ +   +      +A    +  L +   N         +  
Sbjct: 632 SSGIMNDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGE 691

Query: 419 HDLHM-----------KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +              + + +  + +    T  V+    L+ LI  ++ Y +S K I  
Sbjct: 692 TSVVSGPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITT 751

Query: 468 TDKMLQTLLEGVK 480
            D+++Q  ++  +
Sbjct: 752 ADQLMQEAIQLKR 764



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/363 (7%), Positives = 77/363 (21%), Gaps = 34/363 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           ++       +              NI N +   +                          
Sbjct: 1   MVGSLYSGISGIKTHQTGIDVTSNNIANVNTTGFRANSPEFKSLFSTHLNYVNSNSPVAN 60

Query: 49  ----NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--------DHY 96
                VT+ +         D                + +  +    +             
Sbjct: 61  DYNYGVTIGSNAINTN---DGTYVNADGDFNVAYSGKGWFVVGLNKNGAFDITNPDYTGA 117

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
             +            E Y  N S        I+  +       T A  +++   +    +
Sbjct: 118 QQNYFTRDGSFSLDGEGYLVNSSG--YYMYGINLGKIAADGTLTGANNLEQDYDNLGGSV 175

Query: 157 ELEISNLRRFLSEL---TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
              I   +    +    T VN A+             L   +        +      + +
Sbjct: 176 LEPIQIPKEMHYQPTLTTQVNLAVNLNRTQNAQGITALQDENGNFSMEKFLALDMNSLMD 235

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           ++  ++   +   +  +V ++   +           N     G +++  +        +K
Sbjct: 236 SSGKLIDAKNYKDITFSVEQNGETKNYTFTYGAEGENGFKTTGELITLIKERTGLDLALK 295

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                  S   ++ +        L  S      +  ++ N           +   +    
Sbjct: 296 LDSLGNPSDCSLYLSNNTMQEMTLSISGRLAQKLGLSTNNETLESAFQSQVETFTENTNY 355

Query: 334 ISE 336
            + 
Sbjct: 356 PNG 358


>gi|224531677|ref|ZP_03672309.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116]
 gi|224511142|gb|EEF81548.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116]
          Length = 265

 Score = 71.6 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 18/212 (8%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
             KI A  +I +       N L ++A    G +    P    +    G F  D  ++L  
Sbjct: 71  GTKIAATHRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRELVT 130

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +   I    +Y  N   + D G VS K   N + +                    
Sbjct: 131 SQGYKVLPNIFFPEEYIQNSITISDQGIVSVKIDNNNEPI----------------ELGQ 174

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             ++       L     N   + E   S      +        + +       V++ EE+
Sbjct: 175 IEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGTEGMGRLKQGILEMSNVSIAEEM 232

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +I  +++Y I++K I  +D ML       +
Sbjct: 233 VTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/174 (5%), Positives = 35/174 (20%), Gaps = 27/174 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQDRAGTPATENT 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +        + ++      + + +           F  +               
Sbjct: 61  LRPLGNQVGHGTKIAATHRIFEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGTYAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 +              +   +    E +  +   S + +  ++ D + E
Sbjct: 115 TRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIQNSITISDQGIVSVKIDNNNE 168


>gi|260886211|ref|ZP_05897474.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC
           35185]
 gi|330839793|ref|YP_004414373.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC
           35185]
 gi|260863930|gb|EEX78430.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC
           35185]
 gi|329747557|gb|AEC00914.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC
           35185]
          Length = 263

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---RSNPSFLRDG 354
           I +          ++          I+  D  +      +  ++       ++   L DG
Sbjct: 80  IFTQGNLQSSGNPTDVAIQGEGFFRIEMPDGTIAYTRDGSFKLDQNRRLVTTDGYPLADG 139

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            ++      +   +AG   +                ++       L    +N   + E +
Sbjct: 140 ITLDANAPSDSIVIAGDGQVSCTPAGGNVTAVGQITLSRFVNPAGLFAIGKNL--FKETD 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +       +     +++       + + EE+  +I  +++Y  ++K I  +D ML+ 
Sbjct: 198 ASGNAIDSNPGEEGAGTLTQGVVEMSNIQIVEEMVNMIVAQRAYESNSKAITTSDSMLEI 257

Query: 475 LLEGVK 480
                +
Sbjct: 258 ANSLKR 263



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/157 (4%), Positives = 22/157 (14%), Gaps = 15/157 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A +           +  NI N +     +                        
Sbjct: 1   MMRALWSAASGMKAQQDNMDVVAHNIANVNTFGSKKVRAEFQDLVYQNLRAAGAQSGADS 60

Query: 57  SE--------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                                    +             E     +  + +         
Sbjct: 61  QYPTGLAIGLGTRTAATQRIFTQGNLQSSGNPTDVAIQGEGFFRIEMPDGTIAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
           +              L   +  +A     +   +   
Sbjct: 121 KLDQNRRLVTTDGYPLADGITLDANAPSDSIVIAGDG 157


>gi|312148533|gb|ADQ31192.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi JD1]
          Length = 265

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFINPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        +   +          + + +           F  +            
Sbjct: 61  LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +              +   ++   E +  +   S   +  ++ D   E
Sbjct: 112 YAYTRDGSFKIDSNRELVTNQGYKVLPNILFPEEYIQNSITISEEGIVSVKIDTSNE 168


>gi|330445350|ref|ZP_08309002.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489541|dbj|GAA03499.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 262

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+      +   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSTQDTTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
            +    +    TI  + Q  ++ S       +          +    ++      +  N+
Sbjct: 110 GNIGYTRNGQFTINADGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                          +    +N   +L    S            +  I +S   T  VN+
Sbjct: 170 VLGQITTVDFINPGGMEPIGQNL--FLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 43/209 (20%), Gaps = 31/209 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +      ++   +      ++I  N+ NA    + +   +                   T
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60

Query: 45  ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  K          ++A+        F  +           N   
Sbjct: 61  TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVL------LPDGNIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157
               +   + +            +  I    D     V      +  ++  + +      
Sbjct: 115 TRNGQFTINADGQLVTSGSGYPVQPEIVVPEDAVGITVGTDGEVSARIRGEQENQVLGQI 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHD 186
             +  +     E    N  +    +    
Sbjct: 175 TTVDFINPGGMEPIGQNLFLPTGASGDPQ 203


>gi|255323568|ref|ZP_05364698.1| flagellar hook protein [Campylobacter showae RM3277]
 gi|255299282|gb|EET78569.1| flagellar hook protein [Campylobacter showae RM3277]
          Length = 543

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 57/184 (30%), Gaps = 1/184 (0%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  D       +       +G +   +      +  I       S    +      
Sbjct: 360 TNGELNFDHEGRLVNSTLSALDNNGSQVELDFGTPVAAGQIYSGVTSTSQAKSISIAQDG 419

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            ++ +          +++  + +   ++     +        L +   N       + + 
Sbjct: 420 VREGILKDYYTNDSGNILAQFTNGQVRSVGKVALYHFQNEQGLAKMGDNIYSQSANSGAA 479

Query: 418 SHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                   + ++   ++ S      V+L + L+ +I  +++Y+ + K I  +++MLQ  +
Sbjct: 480 FFYKDAGGKSIYGAKLASSMLEQSNVDLAQALTEVIVTQKAYDANAKSITTSNEMLQRAI 539

Query: 477 EGVK 480
           E  +
Sbjct: 540 ELKR 543


>gi|24112486|ref|NP_706996.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str.
           301]
 gi|30062614|ref|NP_836785.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str.
           2457T]
 gi|24051372|gb|AAN42703.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str.
           301]
 gi|30040860|gb|AAP16591.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str.
           2457T]
 gi|281600496|gb|ADA73480.1| Flagellar basal body rod protein flgG [Shigella flexneri 2002017]
 gi|313650470|gb|EFS14877.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2a str.
           2457T]
 gi|332758238|gb|EGJ88561.1| flagellar basal-body rod protein FlgG [Shigella flexneri 4343-70]
 gi|332759659|gb|EGJ89964.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2747-71]
 gi|332761424|gb|EGJ91708.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-671]
 gi|332767686|gb|EGJ97879.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2930-71]
 gi|333005399|gb|EGK24917.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-218]
 gi|333019426|gb|EGK38709.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-304]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYIRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYIRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|157160605|ref|YP_001457923.1| flagellar basal body rod protein FlgG [Escherichia coli HS]
 gi|170020526|ref|YP_001725480.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739]
 gi|312971215|ref|ZP_07785393.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70]
 gi|157066285|gb|ABV05540.1| flagellar basal-body rod protein FlgG [Escherichia coli HS]
 gi|169755454|gb|ACA78153.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739]
 gi|310336417|gb|EFQ01603.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     Y R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGYKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|187918627|ref|YP_001884192.1| flagellar basal body rod protein FlgG [Borrelia hermsii DAH]
 gi|119861475|gb|AAX17270.1| flagellar basal-body rod protein FlgG [Borrelia hermsii DAH]
          Length = 265

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L     N   + E   S               + +       V++ EE+  +I 
Sbjct: 180 FVNPAGLNAIGNNI--FKETIGSGEEISGTPGSDGMGRLRQGILEMSNVSIAEEMVTMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++Y I++K I  +D ML       +
Sbjct: 238 AQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/174 (6%), Positives = 32/174 (18%), Gaps = 27/174 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMKAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQRRAGTPATEDT 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +        + ++      L A +           F  +               
Sbjct: 61  VSPLGNQVGHGTKVSATHRIFEQGNLQATNLNTDVAIEGNGFYKIL------LPDGTYGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 +              L   +      +  +   S   +  ++ D   E
Sbjct: 115 TRDGSFKIDANGALVTSQGYKLLPDISFPEGYIKDSITISQEGIISVKVDESPE 168


>gi|73539452|ref|YP_299819.1| flagellar basal body rod protein FlgG [Ralstonia eutropha JMP134]
 gi|72122789|gb|AAZ64975.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134]
          Length = 261

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +   +   F    + D      +  S  +  N Q  ++  F+      
Sbjct: 82  TQGNPQQTGNSKDVAIIGQGFFQVAMPDGTTAYTRDGSFQVDQNGQLVTSSGFVIQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     S N       +A       L     N   +++ + S 
Sbjct: 142 IPANTTSMTVARDGTVSVTQPGSSNNVQVGQLQLATFMNPAGLESMGENL--YVQTDASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +  +        + ++Y     VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNTTVPGLNGAGVLQQNYVEASNVNVVEELVSMIQTQRAYEINSKAVQTSDQMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/170 (7%), Positives = 33/170 (19%), Gaps = 21/170 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +    Q   I  N+ N     + R   +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEDLMYQNIRQPGALSSDQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + +H   +              +           +     
Sbjct: 61  TLPSGLQLGTGVR---PVATERIHTQGNPQQTGNSKDVAIIGQGFFQVAMPDGTTAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              +          S  ++   +   A                    ++ 
Sbjct: 118 GSFQVDQNGQLVTSSGFVIQPAITIPANTTSMTVARDGTVSVTQPGSSNN 167


>gi|332342624|gb|AEE55958.1| flagellar basal-body rod protein FlgG [Escherichia coli UMNK88]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 32/156 (20%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +++    A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  VT    +       L   +++       Q F  +           +
Sbjct: 61  TLPSGLQIGTGVRPVTTERLHSQ---GNLSQTNNSKDVAIKGQGFFQVM------LPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           S        +              +   +   A  +
Sbjct: 112 SAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|313905135|ref|ZP_07838504.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6]
 gi|313470038|gb|EFR65371.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6]
          Length = 336

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 78/325 (24%), Gaps = 10/325 (3%)

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +   I+N+     +             S   +    D         +             
Sbjct: 22  LGNNIANVNTNGFKSQNYTFKDAMYQTSAASSGGARDADGTATIGGTNPSQFGYGSVQGA 81

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
               +TS            IN          + +  +  D    ++ +  +         
Sbjct: 82  IATDFTSSTPQYVGGFNASINGSGFFITKAANSTVALSGDHTTQANVEADSTILKNANFN 141

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                         + +  +  +  +   +P  G + N+      D  + +  +    +S
Sbjct: 142 YTRVGQFTIDANGYMVDANKNFVYGYQPTNPTTGTANNISDPTSYDETRLVALRAPAEVS 201

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                                        + N  G    +     +       + +A   
Sbjct: 202 ADGNTFSFAGQALQLKSVQVDNDGIIKATINNSNGDAMNVVLGKVAIAAFQNQEGLAKAG 261

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
            N        N+          +             +   Y     V+L +E S +I  E
Sbjct: 262 NNTFNTRVGDNTGLLTATVPGGATP----------SLMGGYLEGSNVDLAKEFSDMITTE 311

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  + KLI  +D++LQ L+   +
Sbjct: 312 RGFQANAKLITVSDEVLQELVNMKR 336



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/282 (8%), Positives = 67/282 (23%), Gaps = 14/282 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L   + A +   +   +   +  NI N +   +  ++     +    +  +        
Sbjct: 1   MLRAMDSAVSGLRSHQNKLDVLGNNIANVNTNGFKSQNYTFKDAMYQTSAASSGGARDAD 60

Query: 63  FDKVLHAHS-SAIGQQRLLQSFE--------ALKEMMSADDHYNNSPTHYISKLRDSLES 113
               +   + S  G   +  +                +A  + +       +    +L  
Sbjct: 61  GTATIGGTNPSQFGYGSVQGAIATDFTSSTPQYVGGFNASINGSGFFITKAANSTVALSG 120

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                +      T++ NA            +      DA+K                  +
Sbjct: 121 DHTTQANVEADSTILKNANFNYTRVGQFTIDANGYMVDANKNFVYGYQPTNPTTGTANNI 180

Query: 174 NDAIKFKTA-----SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +D   +                         +  ++  +           +  S+G  + 
Sbjct: 181 SDPTSYDETRLVALRAPAEVSADGNTFSFAGQALQLKSVQVDNDGIIKATINNSNGDAMN 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             + +       N   +    N  F   V  ++   +A   G
Sbjct: 241 VVLGKVAIAAFQNQEGLAKAGNNTFNTRVGDNTGLLTATVPG 282


>gi|291613040|ref|YP_003523197.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus
           ES-1]
 gi|291583152|gb|ADE10810.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus
           ES-1]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++     +       F    + D      +  S       Q  ++  F+      
Sbjct: 82  TQGNLQQTSNQLDVAIQGAGFFQVLMPDGTTAYTRDGSFQTDSQGQIVTSNGFVVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  V         +     +         +A       L    +N   +LE   S 
Sbjct: 142 IPANATTVTIGQDGVVTVTQPGATAPVQVGSMQLATFINPTGLESMGQNM--YLETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   ++        IS+ Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L +
Sbjct: 200 TPSTNVPGTNGTGSISQGYVETSNVNVVEELVNMIQTQRAYEINSKAITVSDQMLQKLAQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/162 (6%), Positives = 29/162 (17%), Gaps = 33/162 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     ++        Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLEAQQTQMDVISNNLANVSTNGFKRSRAVFEDLLYQNLRQPGAQSSQQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   S+ +        F  +            
Sbjct: 61  QIPSGLQIGTGVRPVATERIH---TQGNLQQTSNQLDVAIQGAGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
           +        +   +      +  ++   +   A         
Sbjct: 112 TAYTRDGSFQTDSQGQIVTSNGFVVQPAITIPANATTVTIGQ 153


>gi|251789170|ref|YP_003003891.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591]
 gi|247537791|gb|ACT06412.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  S     N Q  ++  F             N+    
Sbjct: 94  DLAIKGAGFFQVLMPDGTTAYTRDGSFQQDSNGQLVTSSGFQVQPVITIPANSSNLTVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A       L     N     E   S +           
Sbjct: 154 DGVVTVTQQGQAAPVQIGQLNLAMFINEAGLENLGENLYA--ETASSGAPTQSTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             I + +  T  VN+ EEL  +I+ +++Y I++K I  TD+MLQ L + 
Sbjct: 212 GLIYQKFVETSNVNVAEELVSMIQTQRAYEINSKAISSTDQMLQKLTQL 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 30/149 (20%), Gaps = 21/149 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   N        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + +H   S      +                   +     
Sbjct: 61  TLPSGLQLGTGVR---PVATERIHTQGSFSETGNVKDLAIKGAGFFQVLMPDGTTAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              +          S   +   +   A  
Sbjct: 118 GSFQQDSNGQLVTSSGFQVQPVITIPANS 146


>gi|317153844|ref|YP_004121892.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944095|gb|ADU63146.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           D          +        L    RN   +     S            F  +++++   
Sbjct: 162 DGAALAETDIDIYRFQNPAGLTAIGRNF--YRGSEASGDAVAGTPGDENFGTLAQAFLEG 219

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V + +E+  LI  +++Y I++K I  +D MLQT +   +
Sbjct: 220 SNVEMVDEMVGLIVGQRAYEINSKAITTSDGMLQTAINIKR 260



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 24/143 (16%), Gaps = 28/143 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A            ++  N+ N +   + +                        
Sbjct: 1   MMRSLWTAATGMVAMQTHIDTLSNNLANVNTTGFKKSRAEFEDLMYQTLQIAGTETQSGG 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           + +             E     D       
Sbjct: 61  RLPVGMQVGMGVRPVSVHKFFTQGDFKNTGNPLDIAIEG-------EGFFLVDMNGEDVY 113

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 +   E         +L 
Sbjct: 114 TRDGSFKLDNEGRVVTAGGHVLQ 136


>gi|319764541|ref|YP_004128478.1| flagellar basal-body rod protein flgg [Alicycliphilus denitrificans
           BC]
 gi|317119102|gb|ADV01591.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans
           BC]
          Length = 260

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R       ++   + +       F    + D      +  S  +    +  ++    
Sbjct: 76  ATSRHFTQGSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSFQLDAQGRMVTSGGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G    +   ++              ++  +      ++       L    +N   + 
Sbjct: 136 VANGITVPQGATSISISETGVVSATIAGNAQPQQLGQLAMSSFINAAGLQPVGQNM--YK 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S               I + +  T  VN+ EEL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ESAASGPPQQGQPGTNGLGVIKQGFLETSNVNVVEELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTL 475
           L  L
Sbjct: 254 LAKL 257



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/177 (7%), Positives = 34/177 (19%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEEN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S+++        F  ++           
Sbjct: 61  QLPTGLHLGLGVRTVATSRH---FTQGSLQQSSNSLDVAINGNGFFEVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +   +          +   +         + + +      I  +A  +
Sbjct: 112 IGYTRDGSFQLDAQGRMVTSGGLPVANGITVPQGATSISISETGVVSATIAGNAQPQ 168


>gi|170722889|ref|YP_001750577.1| flagellar basal body rod protein FlgG [Pseudomonas putida W619]
 gi|169760892|gb|ACA74208.1| flagellar basal-body rod protein FlgG [Pseudomonas putida W619]
          Length = 261

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F      D      +  +  +  + Q  +   F  
Sbjct: 77  TQKNFQTGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTFHLNSDGQIVTANGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFINPAGLQAIGDNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   D+ML
Sbjct: 195 TAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQML 254



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/249 (7%), Positives = 53/249 (21%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSP 100
             P  + V T         N     L    + +      + F  + +      +  + + 
Sbjct: 61  ELPSGLQVGTGVRIVGTQKNFQTGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +   ++   +  +          +      T+A           +  +   
Sbjct: 121 HLNSDGQIVTANGFALEPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFIN 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
               + + +   +  A            +          + S +  +  +V        Y
Sbjct: 181 PAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQTLENSNVSTVEELVNMITTQRAY 240

Query: 221 TSDGTTLFE 229
             +   +  
Sbjct: 241 EMNSKVIST 249


>gi|303248239|ref|ZP_07334502.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans
           JJ]
 gi|302490377|gb|EFL50288.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans
           JJ]
          Length = 260

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 46/182 (25%), Gaps = 2/182 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +  +        +          +     +L                +        + S
Sbjct: 81  FTQGDLQNTGNQLDIAIQGQGFFKVDVNGRELYTRAGSFKLNQDGTIVSSGGYPLQPTFS 140

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                    +     L     +         P+        +    RN         S +
Sbjct: 141 VPTDTKTITITENGHLSCLDLNGDTLAETDIPLYTFINPSGMTAEGRNLYST--TQASGT 198

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +           +++ Y     V L +E+  LI  +++Y  ++K I   D MLQT +  
Sbjct: 199 ANEVTPGDQNAGTLAQGYLEMSNVELVDEMVGLIVGQRAYEANSKAITTADGMLQTAVNV 258

Query: 479 VK 480
            +
Sbjct: 259 KR 260



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 7/147 (4%), Positives = 24/147 (16%), Gaps = 14/147 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           ++     A         Q  ++  N+ N +   + +                        
Sbjct: 1   MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETTGGN 60

Query: 57  SENKNMFDKVLHA--------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                +   +               +             +     D             +
Sbjct: 61  RIPTGLQVGLGVKPTTVHKFFTQGDLQNTGNQLDIAIQGQGFFKVDVNGRELYTRAGSFK 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV 135
            + +    +     L  T     +   
Sbjct: 121 LNQDGTIVSSGGYPLQPTFSVPTDTKT 147


>gi|163789664|ref|ZP_02184102.1| flagellar hook-associated protein K [Carnobacterium sp. AT7]
 gi|159875196|gb|EDP69262.1| flagellar hook-associated protein K [Carnobacterium sp. AT7]
          Length = 98

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 12/97 (12%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPE 48
          MS L    N A            +   NI NA+ + Y R+                    
Sbjct: 1  MSGLFGTLNNATKGLLVQQSALQTTSHNISNANTEGYSRQKVTMVADNPYTLGGIGQLGT 60

Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85
           V + +         +  L   +S++          A
Sbjct: 61 GVRIASIDRIVDPYVNNQLRNENSSLEMYSQKSDVLA 97


>gi|170755157|ref|YP_001782254.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1
           str. Okra]
 gi|169120369|gb|ACA44205.1| flagellar basal body rod protein [Clostridium botulinum B1 str.
           Okra]
          Length = 263

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/191 (9%), Positives = 42/191 (21%), Gaps = 24/191 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V             +L    +        Q F  +           N      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MPDGNYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L   +       + N      +     A+       +I  + 
Sbjct: 115 GNFVVDRNGMLVDENGNRLEIQLQQPEGSQILNRIGEFSKNNINIAEDGSISVKDIDGIN 174

Query: 165 RFLSELTVVND 175
           + + ++ + N 
Sbjct: 175 KMVGKINIYNA 185



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
           F  N  N+A    +     D  NK      +     +   +   RN     E     +++
Sbjct: 152 FSKNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNLYIPQEGVNVFANN 211

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                      I + +     V+  +E++ +I  ++++ +S++ I   D+M
Sbjct: 212 DV--------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEM 254


>gi|111115606|ref|YP_710224.1| flagellar basal body rod protein FlgG [Borrelia afzelii PKo]
 gi|110890880|gb|ABH02048.1| flagellar basal-body rod protein [Borrelia afzelii PKo]
          Length = 265

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSKGMGKLRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/177 (5%), Positives = 32/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        +   +          + + +           F  +            
Sbjct: 61  LRPLGNQVGHGTKIAATQRI---FEQGKMQSTNLLTDVAIEGDGFYKIL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +              +   +    E +  +   S + +  ++ D   E
Sbjct: 112 YAYTRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIRNSITISEQGIVSVKIDNSNE 168


>gi|94263287|ref|ZP_01287103.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94267694|ref|ZP_01290963.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451896|gb|EAT02627.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456370|gb|EAT06494.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 260

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/183 (7%), Positives = 43/183 (23%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +         + +          +     +              +    +  R     
Sbjct: 80  IFTQGSIHETGSDLDIAIEGKGFFQVLKDGEEFYTRAGNFTRDADGFIVTQNGDRLQPEF 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                    ++     +                +        L     N   +     S 
Sbjct: 140 QIPPETVSLHIGADGLIQAKDAAQEIIAEDQLTLFDFINPGGLRAEGGNL--FRATEASG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                         + + ++    V + EEL  LI  ++++ +++K +   D++L+    
Sbjct: 198 DPREADPGTEGVGVLLQRFNEVSNVEVTEELVNLIITQRAFEMNSKSVQTADQLLEVANT 257

Query: 478 GVK 480
             +
Sbjct: 258 LKR 260



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 23/136 (16%), Gaps = 14/136 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++               Q  +I  N+ N +   + +  T                     
Sbjct: 1   MIRALYSGTTGMRGQQLQLDTISNNLANVNTAGFKKSRTQFEDLYYQELRAVGVENIDGG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V    Q                 +I +           +                    
Sbjct: 61  QVPSGMQVGLGVKATANQKIFTQGSIHETGSDLDIAIEGKGFFQVLKDGEEFYTRAGNFT 120

Query: 109 DSLESYSKNLSEDILG 124
              + +    + D L 
Sbjct: 121 RDADGFIVTQNGDRLQ 136


>gi|91792666|ref|YP_562317.1| flagellar basal body rod protein FlgG [Shewanella denitrificans
           OS217]
 gi|91714668|gb|ABE54594.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217]
          Length = 262

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 62/210 (29%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G      ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISADNTKLPNGLNIGAGTKVVATQKMFSQGNMLTTDNSLDLMIEGPGFFEVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    ++    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTPAYTRNGQFSLDDTGQIVTPGSGYVLQPAITIPENATGITVSAGGEVSVKIPGTAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           ++      +        L    +N         S +      S      I +    T  V
Sbjct: 168 SQVIGQITMTDFINPSGLDPLGQNLYTETG--ASGTPIQGTASLDGLGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIQSQRIYEMNSKVISAVDQML 255



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      + I  N+ NA    Y +   +                ++N 
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISADNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + + +  + +     L                         + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFSQGNMLTTDNSLDLMIEGPGFFEVQLPDGTPAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E       ++  EV 
Sbjct: 121 SLDDTGQIVTPGSGYVLQPAITIPENATGITVSAGGEVS 159


>gi|320173530|gb|EFW48726.1| Flagellar basal-body rod protein FlgG [Shigella dysenteriae CDC
           74-1112]
          Length = 260

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSVYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSVYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|153940763|ref|YP_001391938.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str.
           Langeland]
 gi|152936659|gb|ABS42157.1| flagellar basal body rod protein [Clostridium botulinum F str.
           Langeland]
 gi|295319958|gb|ADG00336.1| flagellar basal body rod protein [Clostridium botulinum F str.
           230613]
          Length = 263

 Score = 71.2 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 24/191 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V             +L    +        Q F  +           N      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MPDGNYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L   +   A   + N      +     A+       +I  + 
Sbjct: 115 GNFVVDRNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGMN 174

Query: 165 RFLSELTVVND 175
           + + ++ + N 
Sbjct: 175 KMVGKINIYNA 185



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +     +   +   RN   ++ +   + 
Sbjct: 150 GGFSKNNINIAEDGSISVKDIDGMNKMVGKINIYNAVGSDAFVSIGRNL--YIPQEGVNV 207

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +         I + +     V+  +E++ +I  ++++ +S++ I   D+M   ++  
Sbjct: 208 FTNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260

Query: 479 VK 480
           ++
Sbjct: 261 MR 262


>gi|291288379|ref|YP_003505195.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885539|gb|ADD69239.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 262

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 67/193 (34%), Gaps = 2/193 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +++  + +V      +   ++ +       +    +   +    +  S     +    ++
Sbjct: 72  SKVAAIEKVHTQGSFQYTGVSLDIAVEGDGYFQFTLPSGEIAYTRNGSLKTDADGNLVNS 131

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
             +  +        + ++         +    +   +      ++       L    +N 
Sbjct: 132 NGYYLEPAVTVPDDVTDIAFGEDGTISVTLAGEEEAQEIGQIELSRFINPAGLKAIGKNL 191

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             ++    S +    + S+  +  I+++      V++ +E+  +I  +++Y I++K +  
Sbjct: 192 --FMPTGASGNAVAGVPSEDGYGSITQNTLEMSNVSVVDEMVNMITGQRAYEINSKAVQT 249

Query: 468 TDKMLQTLLEGVK 480
            D+MLQ +    +
Sbjct: 250 GDEMLQIVNNLKR 262



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/145 (7%), Positives = 26/145 (17%), Gaps = 15/145 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +      A            +I  N+ N +N  Y +                   + +  
Sbjct: 1   MFRTLWTAATGMTAQQTNIDTISNNLANVNNIGYKKSRAHFEDLIYQELKPAGAISAAGM 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107
                 Q      +          +     +        +                   L
Sbjct: 61  THPTGIQVGLGSKVAAIEKVHTQGSFQYTGVSLDIAVEGDGYFQFTLPSGEIAYTRNGSL 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAE 132
           +   +    N +   L   V    +
Sbjct: 121 KTDADGNLVNSNGYYLEPAVTVPDD 145


>gi|291617022|ref|YP_003519764.1| FlgG [Pantoea ananatis LMG 20103]
 gi|291152052|gb|ADD76636.1| FlgG [Pantoea ananatis LMG 20103]
 gi|327393473|dbj|BAK10895.1| flagellar basal-body rod protein FlgG [Pantoea ananatis AJ13355]
          Length = 260

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +N  F    G  
Sbjct: 82  TQGNLSQTNNSKDIAINGQGFFQIQMPDGTSAYTRDGSFQVDQNGQLVTNSGFPVQPGIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         ++    N  L     N   + E   S 
Sbjct: 142 IPANATSITVSRDGVVSVTQQGQTQAAQVGQLTLSTFMNNAGLDSVGENL--YKETQASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       Q     + + Y+ T  VN+ EEL  +I+ +++Y I++K I  +D+ML  L +
Sbjct: 200 APTDSTPGQNGAGLLYQGYAETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLAKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 52/237 (21%), Gaps = 37/237 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  VT    +       L   +++       Q F  ++           
Sbjct: 61  TLPSGLQIGTGVRPVTTERLH---TQGNLSQTNNSKDIAINGQGFFQIQ------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA----REVQKIRADADK 154
           S        +          S   +   +   A       +        +  + +A    
Sbjct: 112 SAYTRDGSFQVDQNGQLVTNSGFPVQPGITIPANATSITVSRDGVVSVTQQGQTQAAQVG 171

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
           ++ L        L  +          + +  D+    +   +L Q  +E   ++   
Sbjct: 172 QLTLSTFMNNAGLDSVGENLYKETQASGAPTDSTPGQNGAGLLYQGYAETSNVNVAE 228


>gi|283850807|ref|ZP_06368093.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B]
 gi|283573730|gb|EFC21704.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B]
          Length = 260

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +   +     P+     +  L    RN         S               +++ +  
Sbjct: 161 QNGAAQGETDIPLYTFINSPGLTAEGRNLYST--TQASGDAQEVTPGDQNAGTLAQGFLE 218

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              V L +E+  LI  +++Y  ++K I   D MLQT +   +
Sbjct: 219 MSNVELVDEMVGLIVGQRAYEANSKAITTADGMLQTAVNVKR 260



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/145 (6%), Positives = 24/145 (16%), Gaps = 14/145 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           ++     A         Q  ++  N+ N +   + +                    V   
Sbjct: 1   MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTQQVAGTETVGGN 60

Query: 57  SENKNMFDKVLHA--------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                +   +               +             E     D             +
Sbjct: 61  RLPTGLQVGLGVKPTTVHKFFTQGDLQNTGNQLDIAIQGEGFFKVDVNGRDLYTRAGSFK 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEE 133
            + +      +   L       A  
Sbjct: 121 LNQDGTIVTANGYPLQPAFSVPAGT 145


>gi|37681979|gb|AAQ97867.1| FlgG [Photorhabdus luminescens]
          Length = 150

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 2/152 (1%)

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +   +  S     N Q  +   FL            ++   +     +     S  +  
Sbjct: 1   TSAYTRDGSFQEDQNGQLTTANGFLIFPTITIPDNATDLTISSDGIVSVKVQGQSVPQQV 60

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +     +  L     N   ++E + S     +         +   Y  T  VN+ E
Sbjct: 61  GQFTLTTFINDSGLESIGENL--YVETSSSGVPIENTPGINGAGLLQHKYVETSNVNIAE 118

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EL  +I+ +++Y +++K +  +D+MLQ L + 
Sbjct: 119 ELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQL 150


>gi|218678738|ref|ZP_03526635.1| flagellar hook-associated protein FlgK [Rhizobium etli CIAT 894]
          Length = 168

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL +  N AQ+I NN  QQ + I  NI N  N +YVRR+   T S     VV+     +
Sbjct: 1   MSLTSALNSAQSIFNNTGQQSSVISTNIANVGNSDYVRREASITTSLSGAQVVSISRAQE 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                     ++    Q+ L +     + +   + Y  SP+ Y+S  + +L++Y+ + S 
Sbjct: 61  TALLAQYLQSNAKDSAQQTLVTGLESLKSLMGGNDYETSPSTYLSAFQQALQTYATSPSS 120

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
               ++ +  A+++  + NT++  VQ IRADAD +I  ++S+L   L
Sbjct: 121 TTAAQSAVTAAQDLANSLNTASDGVQSIRADADADIATQVSSLNTLL 167


>gi|119469952|ref|ZP_01612757.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Alteromonadales bacterium TW-7]
 gi|119446662|gb|EAW27935.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Alteromonadales bacterium TW-7]
          Length = 262

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 63/208 (30%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++     ++    +            + +       F      D
Sbjct: 50  NQPGGRSSQDTEMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNK 384
            +    +    T   + +  ++ S       ++         ++   ++       + N 
Sbjct: 110 GNIAYSRNGQFTTDGDGRIVTSGSGYVVQPEMNVPDDAQSITISQDGEVSVRISGQADNV 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N     E   S +             I +    T  VN+
Sbjct: 170 VIGQLTISDFINPSGLEPVGQNLYT--ETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+M+
Sbjct: 228 TEELVNLIETQRIYEMNSKVISAVDEMM 255



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/165 (7%), Positives = 36/165 (21%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      + I  N+ NA    Y +   +                    
Sbjct: 1   MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60

Query: 46  -SPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  KN     +    +++        F  + +         N   
Sbjct: 61  EMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQ------PDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +     +          + +  ++  ++      +   EV 
Sbjct: 115 SRNGQFTTDGDGRIVTSGSGYVVQPEMNVPDDAQSITISQDGEVS 159


>gi|269103188|ref|ZP_06155885.1| flagellar basal-body rod protein FlgG [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163086|gb|EEZ41582.1| flagellar basal-body rod protein FlgG [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 262

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 63/208 (30%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+      +   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQATQDSTLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQILLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NK 384
            +    +    TI    Q  +  S       +          +    ++         N+
Sbjct: 110 GNMGYTRNGQFTINAEGQLVTTGSGYVVQPEIVVPEDAVGITVGTDGEVSARIRGQQENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                          L    +N   +L    S               I +S   T  VN+
Sbjct: 170 VLGQLTTVDFINPGGLEPIGQNL--FLPTGASGDAQEGTPGLDGLGTIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISTVDQML 255



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 53/235 (22%), Gaps = 32/235 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +      ++   +      ++I  N+ NA    + +   +                   +
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQATQDS 60

Query: 45  ISPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  K          ++A+        F  +           N   
Sbjct: 61  TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQIL------LPDGNMGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI----DNAEEVVQNFNTSAREVQKIRADADKEIE 157
               +   + E          + +  I    D     V      +  ++  + +      
Sbjct: 115 TRNGQFTINAEGQLVTTGSGYVVQPEIVVPEDAVGITVGTDGEVSARIRGQQENQVLGQL 174

Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             +  +     E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 175 TTVDFINPGGLEPIGQNLFLPTGASGDAQEGTPGLDGLGTIRQSMLETSNVNVTE 229


>gi|239995123|ref|ZP_04715647.1| flagellar basal body rod protein FlgG [Alteromonas macleodii ATCC
           27126]
          Length = 262

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 3/213 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+  A  ++   ++    +++    +            A +       +      D
Sbjct: 50  NQPGGRSSADTELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    ++    Q  ++ +       V+         ++   ++       +  +
Sbjct: 110 GTIAYSRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +    +       +IS+    T  VN+
Sbjct: 170 VLGQLNISDFVNPTGLQPTGQNL--YVETASSGAPIQGIPGLQGLGYISQGTLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            EEL  LI+ ++ Y +++K+I   D+ML  +++
Sbjct: 228 TEELVNLIESQRLYEMNSKVISSVDQMLGQVIQ 260



 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/165 (7%), Positives = 38/165 (23%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49
           +      ++   + A    A +  N+ NA    + +   +           P        
Sbjct: 1   MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                    +     +  K      L    +A+      + +  + +             
Sbjct: 61  ELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQ------PDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +   + +          L +  +   E+  Q   +   E+ 
Sbjct: 115 SRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEIS 159


>gi|167623363|ref|YP_001673657.1| flagellar basal body rod protein FlgG [Shewanella halifaxensis
           HAW-EB4]
 gi|167353385|gb|ABZ75998.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis
           HAW-EB4]
          Length = 262

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           +   G   +  ++ + +      ++     +           + +       F    + D
Sbjct: 50  SQAGGISASNTKLPNGLSIGAGTKVVATQEMFTQGNMLTTDNSLDLMVEGPGFFEVQLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    ++    Q  +  S      +++         ++   ++      ++ N+
Sbjct: 110 GTAAYTRNGQFSLDETGQIVTPGSGYVIQPAITIPEGATSITVSAEGEVSVKTPGNAENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L    +N   +LE   S +      S      I +    T  VN+
Sbjct: 170 VVGQLAIADFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENK 60
           +      ++   +      + I  N+ NA    + +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVSQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLSIGAGTKVVATQEMFTQGNMLTTDNSLDLMVEGPGFFEVQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E       ++  EV 
Sbjct: 121 SLDETGQIVTPGSGYVIQPAITIPEGATSITVSAEGEVS 159


>gi|311694363|gb|ADP97236.1| flagellar basal-body rod protein FlgG [marine bacterium HP15]
          Length = 262

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 2/181 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A+       +      +       F+   + D      +     +  +    +   +  
Sbjct: 77  TAKQFSQGNLQITEQPLDMAINGRGFLQVQLPDGQIAYTRDGQFQLNADGDVVNPDGYPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +      +   N+               +   N     +        L     N   +  
Sbjct: 137 EPAINVPENATNITIGKDGTVTAVTDDQAAPVNLGQITLVDFINPQGLQAIGNNL--FKA 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N S               I +    +  V + EEL  +I  +++Y +++K++  TD+ML
Sbjct: 195 TNASGDPAEGEPGLAGLGSIEQGSVESSNVEVVEELVNMITTQRAYEMNSKVVSTTDQML 254

Query: 473 Q 473
           Q
Sbjct: 255 Q 255



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 51/213 (23%), Gaps = 35/213 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      ++I  N+ N +   + R   +                    
Sbjct: 1   MHPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQINRQPGGLTTQNS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV      K      L      +      + F  ++           
Sbjct: 61  ELPSGLQLGTGVRVVG---TAKQFSQGNLQITEQPLDMAINGRGFLQVQ------LPDGQ 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                  + + + +    N     L     V +NA  +    + +   V   +A      
Sbjct: 112 IAYTRDGQFQLNADGDVVNPDGYPLEPAINVPENATNITIGKDGTVTAVTDDQAAPVNLG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           ++ + +         + N+  K   AS   A  
Sbjct: 172 QITLVDFINPQGLQAIGNNLFKATNASGDPAEG 204


>gi|322806967|emb|CBZ04537.1| flagellar basal-body rod protein FlgG [Clostridium botulinum H04402
           065]
          Length = 263

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 24/191 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V             +L    +        Q F  +           N      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MADGNYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L   +   A   + N      +     A+       +I  + 
Sbjct: 115 GNFVVDRNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGIN 174

Query: 165 RFLSELTVVND 175
           + + ++ + N 
Sbjct: 175 KMVGKINIYNA 185



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +     +   +   RN   ++ +   + 
Sbjct: 150 GGFSKNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNL--YIPQEGVNV 207

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +         I + +     V+  +E++ +I  ++++ +S++ I   D+M   ++  
Sbjct: 208 FTNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260

Query: 479 VK 480
           ++
Sbjct: 261 MR 262


>gi|329901232|ref|ZP_08272757.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549164|gb|EGF33756.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 260

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+      ++     +       F    + D      +  S  I    Q  ++  F+
Sbjct: 76  ATERIFTQGNLQQTSNDKDVAIQGQGFFQVLLPDGTTAYTRDGSFQIDSQGQMVTSSGFV 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       ++         I     +         +A       L     N   ++
Sbjct: 136 IQPAITIPAAAQSLTVGRDGTISITLQGTAAATQIGALQLATFINPAGLESKGENL--YV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + + +         +S+ Y  T  V++ EEL  +I+ +++Y I++K I  +D+M
Sbjct: 194 ETGASGTANTNTPGTNGAGILSQGYVETSNVSVVEELVNMIQTQRAYEINSKAISTSDQM 253

Query: 472 LQTL 475
           L  L
Sbjct: 254 LAKL 257



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 43/214 (20%), Gaps = 36/214 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++        Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLEAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S+        Q F  +            
Sbjct: 61  QLPSGLQLGTGVRPVATERI---FTQGNLQQTSNDKDVAIQGQGFFQVL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
           +        +   +      S  ++   +   A      V    T +  +Q   A     
Sbjct: 112 TAYTRDGSFQIDSQGQMVTSSGFVIQPAITIPAAAQSLTVGRDGTISITLQGTAAATQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                + +     E    N  ++   +   + + 
Sbjct: 172 ALQLATFINPAGLESKGENLYVETGASGTANTNT 205


>gi|290474974|ref|YP_003467858.1| flagellar basal body rod cell-distal protein [Xenorhabdus bovienii
           SS-2004]
 gi|289174291|emb|CBJ81081.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Xenorhabdus bovienii SS-2004]
          Length = 260

 Score = 70.8 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D      +  S     N Q  +   F      +
Sbjct: 82  SQGNLAQTNNSNDVAIKGQGFFQIQMPDGTTGYTRDGSFQKDQNGQLVTAGGFQVVPAII 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +         IN    +  +      +        L     N   +LE N S 
Sbjct: 142 IPDNATKMSIARDGIVSINVQGQNAPQQVGQLTLTTFINESGLESIGENL--YLETNSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
               +         + + Y  T  VN+ EEL  +I+V+++Y I++K +  +D+MLQ L +
Sbjct: 200 VPVENAPGINGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTSDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 11/155 (7%), Positives = 29/155 (18%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTERQPGAMSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       Q F  ++           
Sbjct: 61  NLPSGLQIGTGVRPVATERLHSQ---GNLAQTNNSNDVAIKGQGFFQIQ------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +        +              +   +I     
Sbjct: 112 TGYTRDGSFQKDQNGQLVTAGGFQVVPAIIIPDNA 146


>gi|209884509|ref|YP_002288366.1| flagellar basal body FlaE domain protein [Oligotropha
           carboxidovorans OM5]
 gi|209872705|gb|ACI92501.1| flagellar basal body FlaE domain protein [Oligotropha
           carboxidovorans OM5]
          Length = 602

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/343 (9%), Positives = 91/343 (26%), Gaps = 16/343 (4%)

Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200
           +             ++  +I  +    +  + V   +    +                  
Sbjct: 273 TNDATNIPVDATIGDLLAKIDAISGNTTNPSTVAGGVVTLNSGLAGNLTVSSNNSSAFGA 332

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
           +     ++ +          T  G+     +   ++     +Y ++     +       +
Sbjct: 333 LGFTGTVTAVRGGGGTAGTGTVIGSDSKNFIDESVSGGATTAYDISGAPVSLQF-RWAKT 391

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
            +         +  L    D      Q     +        + +   A  S  +    I 
Sbjct: 392 DSASLGAGHNDVWNLFYQTDPNATGTQVAWQNVGVNFTFGPNGQMNPAVPSVTLANATIG 451

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                L +      +  +        N    +              +++    ++ +Y +
Sbjct: 452 --GIALGDVTVNFGASGLTQFADANGNVQVNQIQNDGFPAGQLQTVSISNNGRVVGNYSN 509

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN---HISESYS 437
             N +     +A  N    L             +           Q +F     I  S  
Sbjct: 510 GRNIDLAAITLATFNGPNFLKR----------VDGGAFEVTDESGQALFGKGGTIVGSSL 559

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                ++ +E + LI  +Q+Y+ + K+I  +++M+Q LL  ++
Sbjct: 560 EGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVLR 602



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/453 (9%), Positives = 103/453 (22%), Gaps = 22/453 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQR 56
           M +      +     + S    +I  NI N+    + R DT        +  N  +    
Sbjct: 1   MGIFGALTTSVAGLRSQSYALENISGNIANSQTTAFKRIDTSFLDLIPDTGSNSQLAGSV 60

Query: 57  SENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLRD 109
             +          + A + +         F A+++  S  D+                  
Sbjct: 61  RSSSRETNTVQGDVQAAAVSTYMAINGDGFFAVQKPGSFTDNNPVFDGVDRYTRRGDFTL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID     V     +    Q +R   D       + +    + 
Sbjct: 121 DKNGYLVNGAGYYLEGIPIDPTTGNV-----TGSVPQVLRFSNDFLPAQPTTAVTYRANL 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            +         +    +  +  D     L   +     +   +N        +  T +  
Sbjct: 176 ASYPLTTKHDTSIPGSELINVGDFTANPLIIGTPPQPYTNGAKNGTTQNSKLTTPTPITT 235

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
           +          +        N I ++G  ++         G   A     D+ +     +
Sbjct: 236 STTLSGLANTDSLGVDFVAGNTITVNGTTITFTV----AGGTNDATNIPVDATIGDLLAK 291

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFI--ADGIKDLDNKLCQGISETICVNPQYRSN 347
           +D ++       +    +   +  + G     ++           G    +         
Sbjct: 292 IDAISGNTTNPSTVAGGVVTLNSGLAGNLTVSSNNSSAFGALGFTGTVTAVRGGGGTAGT 351

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            + +            +      Y          F          G   N     + +  
Sbjct: 352 GTVIGSDSKNFIDESVSGGATTAYDISGAPVSLQFRWAKTDSASLGAGHNDVWNLFYQTD 411

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                   +  +     +      ++ +  +  
Sbjct: 412 PNATGTQVAWQNVGVNFTFGPNGQMNPAVPSVT 444


>gi|21672606|ref|NP_660673.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008454|sp|Q8K9K4|FLGG_BUCAP RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|21623237|gb|AAM67884.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 260

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 2/166 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D +    +  S  +  N Q  +N  +             N+    
Sbjct: 94  DVAINGPGFFQVQLPDGNIAYTRDGSFQLDQNGQLVTNSGYPIIPEINIPPNSINMNIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +   +     +     +  L     N   + E   S +           
Sbjct: 154 DGIVSVTIQGQTQPISIGQLNLINFVNHSGLESLGENL--YQETQASGNPIDTTPGLNGT 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L
Sbjct: 212 GLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKSINTSDQMLQKL 257



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/183 (7%), Positives = 36/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++   +        I  N+ N     + R   +                   T
Sbjct: 1   MIPSLWISKTGLDAQQINMNVISNNLANVSTNGFKRSRAVFEDLMYQTMRQAGTNSSIDT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    S+         F  ++          N   
Sbjct: 61  TLPSGLQLGTGVRPVSTEKIYSQGNLSKTDSSKDVAINGPGFFQVQ------LPDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +          S   +   +      +  N          I+         +++
Sbjct: 115 TRDGSFQLDQNGQLVTNSGYPIIPEINIPPNSINMNIGRDGIVSVTIQGQTQPISIGQLN 174

Query: 162 NLR 164
            + 
Sbjct: 175 LIN 177


>gi|50403744|sp|P50611|FLGE_HELMU RecName: Full=Flagellar hook protein flgE
          Length = 454

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/380 (7%), Positives = 82/380 (21%), Gaps = 21/380 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L       +              NI N +   +                          
Sbjct: 1   MLRSLWSGVSGMQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGL 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISK 106
                       N+          +     +        +                   +
Sbjct: 61  GGQNDVSVGLGVNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGE 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                          ++   + D+     +            R D  K I+    +    
Sbjct: 121 FLFDANGNLVTNGGYVVQGWMKDDLRNAEKISED-----DFFRVDTTKPIQNIQIDPAMM 175

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +      N +++    +        +   +     + + GI+ I  +++++     D   
Sbjct: 176 MPARASSNISLRANLNAGRHVDQVANVFGLGSTTKTPVDGINPIYDSHDNLTQKAEDFGA 235

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           LF      I   +     V+ +++ +  D    S      +   +I        S +   
Sbjct: 236 LFTQSGDAIGLTENQGIWVSYKTSEMVNDIEATSGESSIEINHTRISFTNDSAASGISSV 295

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
               + +  +   +  E     G         +    +  + ++    +       +  S
Sbjct: 296 VAAQNAINALKQKTGVEAFVDNGMLRLQNKNNMDGDAEVKNIRITADGTGAFANFIEGDS 355

Query: 347 NPSFLRDGGSVSKKFLWNVK 366
           + +  R   + S        
Sbjct: 356 DITAFRYRYTTSASPDSGTG 375


>gi|54307272|ref|YP_128292.1| putative FlgG flagellar basal-body rod protein [Photobacterium
           profundum SS9]
 gi|46911692|emb|CAG18490.1| Putative FlgG flagellar basal-body rod protein [Photobacterium
           profundum SS9]
          Length = 261

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 51/176 (28%), Gaps = 2/176 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +     +    A +   +   F    + D +    +             +          
Sbjct: 81  MKTGAYQNTEQATDLAVLGSGFFQIELADGNTGYTRNGQFHRNSEGMMVTAAGLPLMPNI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   N          I+   D   +      +A       L     N   + E   S
Sbjct: 141 EIPENATNFSVGTDGMVTISTADDPEPQEIGQITLANFANAAGLQSLGGNL--FKETGAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +    +  +     IS+       VN+ EE+  +I  +++Y ++ K++   D+ML
Sbjct: 199 GAPIEGVGGEDGLGQISQFSLEGSNVNVVEEMVNMITTQRAYEMNAKVVSSADQML 254



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/186 (9%), Positives = 39/186 (20%), Gaps = 33/186 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++        Q   I  N+ N +   + +   +                    
Sbjct: 1   MHAALWISKTGLAAQDTQMQVISNNLANVNTVGFKQDRAVFEDLFYQMKKQPGAMTDQQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +     M          A     L   F  ++          N
Sbjct: 61  ENPGGLQLGNGVRVVGTQKL---MKTGAYQNTEQATDLAVLGSGFFQIE------LADGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +      +   + E      +   L   +         +  T          D + +   
Sbjct: 112 TGYTRNGQFHRNSEGMMVTAAGLPLMPNIEIPENATNFSVGTDGMVTISTADDPEPQEIG 171

Query: 159 EISNLR 164
           +I+   
Sbjct: 172 QITLAN 177


>gi|319944133|ref|ZP_08018411.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC
           51599]
 gi|319742627|gb|EFV95036.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC
           51599]
          Length = 260

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 2/176 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 ++   + +       F    + D      +  S       Q  ++         
Sbjct: 81  FTQGNLQQTSNSFDLAISGHGFFQLQMPDGTTGYTRDGSFHPDAQGQLVNSNGMPLSPPI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +V         +               +A       L    +N   + E + S
Sbjct: 141 TIPPGTRDVTVGNDGTVSVTIAGQEGVTQIGQIQLATFQNAAGLDPQGQNV--FKESDAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+ML
Sbjct: 199 GTPTAATPGVNGAGLLQQGYLETSNVNVVEELVSMIQTQRAYEINSKAIQTSDQML 254



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 27/145 (18%), Gaps = 33/145 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   I  N+ N     Y R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISHNLANVSTNGYKRSQAVFEDLIYQNMRQVGAQSSADT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S++         F  L+           
Sbjct: 61  QLPTGLQLGTGVRPVATSRL---FTQGNLQQTSNSFDLAISGHGFFQLQ------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDIL 123
           +            +    N +   L
Sbjct: 112 TGYTRDGSFHPDAQGQLVNSNGMPL 136


>gi|168182721|ref|ZP_02617385.1| flagellar basal body rod protein [Clostridium botulinum Bf]
 gi|237796077|ref|YP_002863629.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4
           str. 657]
 gi|182674133|gb|EDT86094.1| flagellar basal body rod protein [Clostridium botulinum Bf]
 gi|229261217|gb|ACQ52250.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str.
           657]
          Length = 263

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 24/191 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V             +L    +        Q F  +           N      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MSDGNYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L   +   A   + N      +     A+       +I  + 
Sbjct: 115 GNFVIDRNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGIN 174

Query: 165 RFLSELTVVND 175
           + + ++ + N 
Sbjct: 175 KMVGKINIYNA 185



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +     +   +   RN     E     +
Sbjct: 150 GGFSKNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNLYIPQEGVNVFA 209

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++           I + +     V+  +E++ +I  ++++ +S++ I   D+M   ++  
Sbjct: 210 NNDV--------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260

Query: 479 VK 480
           ++
Sbjct: 261 MR 262


>gi|220932494|ref|YP_002509402.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H
           168]
 gi|219993804|gb|ACL70407.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H
           168]
          Length = 262

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             ++   +     +     +  +      +A  +    L    RN   +     S    +
Sbjct: 146 ASSISITSDGTIAVEINGSNQPQQIGQIELARFSNPAGLNSIGRNL--FKPTVASGDPIV 203

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  F  I++ +     V + EE+  +I  +++Y I++K I   D+ML+T  +  +
Sbjct: 204 GTPGSPGFGTIAQGFLEMSNVKVVEEMVNMIAAQRAYEINSKAIQAADEMLRTASQLRR 262



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 4/44 (9%), Positives = 12/44 (27%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A    +       +I  N+ N +   + +        
Sbjct: 1  MIGALWTAATGMDAQQTNIDTISNNLANVNTTGFKKTRVNFQDL 44


>gi|317121026|ref|YP_004101029.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591006|gb|ADU50302.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM
           12885]
          Length = 289

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +       Q     + +       V+L  E++ L+  +++Y ++ + ++  D+M+  L+
Sbjct: 226 GAVAALPPGQGGAGRVRQGMLEQANVDLAVEMTRLLAAQRAYQLNARAVLTGDEMMG-LI 284

Query: 477 EGVK 480
             ++
Sbjct: 285 NRLR 288



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/110 (8%), Positives = 16/110 (14%), Gaps = 23/110 (20%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISP---------------ENVTVVTQRSENK--- 60
           +Q      N+ N +   +                            V             
Sbjct: 18  RQVDVTANNLANVNTPGFKASRADFADLVYAALAVPASPATAAAGGVQAGHGVRLAATPR 77

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           +     L +  S          F  + E                     S
Sbjct: 78  SWRQGPLQSTGSPWDLAIDGAGFFQVVE-----PGTGEVLLTRGGAFVLS 122


>gi|330826757|ref|YP_004390060.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans
           K601]
 gi|329312129|gb|AEB86544.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans
           K601]
          Length = 260

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R       ++   + +       F    + D      +  S  +    +  ++    
Sbjct: 76  ATSRNFTQGSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSFQLDAQGRMVTSGGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G    +   ++              ++  +      ++       L    +N   + 
Sbjct: 136 VANGITVPQGATSISISETGVVSATIAGNAQPQQLGQLAMSSFINAAGLQPVGQNM--YK 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S               I + +  T  VN+ EEL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ESAASGPPQQGQPGTNGLGVIKQGFLETSNVNVVEELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTL 475
           L  L
Sbjct: 254 LAKL 257



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/177 (7%), Positives = 34/177 (19%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEEN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   S+++        F  ++           
Sbjct: 61  QLPTGLHLGLGVRTVATSRN---FTQGSLQQSSNSLDVAINGNGFFEVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +   +          +   +         + + +      I  +A  +
Sbjct: 112 IGYTRDGSFQLDAQGRMVTSGGLPVANGITVPQGATSISISETGVVSATIAGNAQPQ 168


>gi|289670517|ref|ZP_06491592.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 390

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/390 (8%), Positives = 108/390 (27%), Gaps = 5/390 (1%)

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
             +  T      + +    +       +  +      ++       +  ++  +A+  + 
Sbjct: 1   TASKLTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQAELGRL 60

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNN 214
                S      S+   +  A+     +        +  +     +S     +S +   N
Sbjct: 61  AVGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTTAANPNNTGSASLSASFSNMSAVDGQN 120

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
             +    ++      +    +      + +     N + +      ++    + +     
Sbjct: 121 VTLSFDGTNWKATNASTGSAVPMTGTGTASNPLVLNGVSMVVGGTPASGDKFLLQPTAGL 180

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKDLDNKL 330
              +  ++    +       +      ++      +    +   P L     ++ +D   
Sbjct: 181 AGSLSVAITDPSRIAAATPVKATATIANQGSGKISDVKVTNAQNPALLTPSSVEFIDANQ 240

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
                         ++  +              +   +       +   ++     I D 
Sbjct: 241 YTIDGAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKIDDA 300

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            A     VTL          +      +       +V+ +    S  +  GVNL EE + 
Sbjct: 301 KALSGGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLDEEAAN 360

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++K++Q+Y  + ++I   D + Q +L  V+
Sbjct: 361 MLKLQQAYQAAAQMISTADTVFQAILGAVR 390


>gi|218660072|ref|ZP_03516002.1| flagellar hook-associated protein FlgK [Rhizobium etli IE4771]
          Length = 231

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 14/228 (6%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           +   +G +++LLQIRD + P FQ QLDE+AR L+  F E++  A  +        + G  
Sbjct: 2   TTTGQGSLQSLLQIRDEIAPNFQKQLDEIARGLVSLFKEQNTAAPPAYVPGLFTWSGGTV 61

Query: 325 DLDNKLCQGISETICVN----PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
           D       G++ TI V+         +P  LRDGG  +   + N   ++GY   ++    
Sbjct: 62  DTGATAVAGMASTISVSTRVITSQGGDPMRLRDGGVNATGVVLNTSGVSGYTAELDRLYT 121

Query: 381 SFNKNFIFDPVA----------GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
           + + +  FDP A          GI++NV+++EYA NS+GWLE+ RS++      +    +
Sbjct: 122 AMSADIDFDPAAGAPVGFDATTGIDSNVSIMEYATNSLGWLEQYRSNATTAAENTSAALS 181

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              E+YSN  GVNL EEL+ L+ +EQSY  + K++   D+ML++LL+ 
Sbjct: 182 RSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNAVDEMLKSLLDI 229


>gi|289804043|ref|ZP_06534672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 179

 Score = 70.8 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 1   SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 60

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 61  IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 118

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 119 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 178

Query: 478 G 478
            
Sbjct: 179 L 179


>gi|15606190|ref|NP_213567.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5]
 gi|2983377|gb|AAC06963.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5]
          Length = 262

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           +   +       K     +       F    + D      +     +    +  ++  + 
Sbjct: 76  DTYGIFTQGNLTKTDNQLDIAIQGDGFFKIVLPDGTIAYTRNGQFRLDSEGRIVNSDGYP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            D          +V   A     +     +  +      +A       L     N   ++
Sbjct: 136 LDPEITIPADAISVSIAADGTVSVLRQGATEVEEVGRIELAKFVNPAGLRRIGNNL--YI 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +   S    +          + + Y  +  VN+ EE+  LI  +++Y  + K I   D+M
Sbjct: 194 QTTASGEPIIDNPGNQGLGTLLQGYLESSNVNIVEEMVNLIIAQRAYEFNTKGIQAADEM 253

Query: 472 LQTLLEGVK 480
           L       +
Sbjct: 254 LSQAANLRR 262



 Score = 70.4 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 48/216 (22%), Gaps = 29/216 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      + +           I  N+ N +   Y +                        
Sbjct: 1   MFRALWTSASGMTAQQTNLDVISHNMANVNTVGYKKMRATFQDLLYQTVEEPGAPTSPTT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP    +      +          L    + +        F  +               
Sbjct: 61  RSPSGFQIGLGTYVSDTYGIFTQGNLTKTDNQLDIAIQGDGFFKIV------LPDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT--SAREVQKIRADADKEIELE 159
               + R   E    N     L   +   A+ +  +     +   +++   + ++   +E
Sbjct: 115 TRNGQFRLDSEGRIVNSDGYPLDPEITIPADAISVSIAADGTVSVLRQGATEVEEVGRIE 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
           ++          + N+     TAS     D    + 
Sbjct: 175 LAKFVNPAGLRRIGNNLYIQTTASGEPIIDNPGNQG 210


>gi|332284021|ref|YP_004415932.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7]
 gi|330427974|gb|AEC19308.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7]
          Length = 261

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 2/128 (1%)

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           ++   ++    L       G   +        N       +        L     N   +
Sbjct: 136 IQPPINIPDNALTITIARDGMVSVTQPGATGANVEVGQLQLNTFINPTGLQSAGENL--Y 193

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +E + S   +           + + Y+ T  VN+ EEL  +I  +++Y +++K I  +D+
Sbjct: 194 VETDASGPANFAQPGLDGAGLVLQQYTETSNVNVAEELVNMITTQRAYEMNSKAIETSDQ 253

Query: 471 MLQTLLEG 478
           ML  L + 
Sbjct: 254 MLARLTQL 261



 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/262 (7%), Positives = 50/262 (19%), Gaps = 33/262 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+    +       I  N+ N +   + R                        
Sbjct: 1   MIRSLWIAKTGLESQQTNMDVISNNLANVNTTGFKRSRANFEDLMYQTIRQPGAQVGAAN 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L    +++      + F  ++           
Sbjct: 61  QLPSGLQIGTGVRTVATERIH---TQGNLKDTGNSMDIAIQGKGFLQVE------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                   L+              +   +      +                     +E+
Sbjct: 112 FAYTRDGSLQVDQNGQLVTAGGYPIQPPINIPDNALTITIARDGMVSVTQPGATGANVEV 171

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               L  F++   + +        +         Q  +    +       T   N  + +
Sbjct: 172 GQLQLNTFINPTGLQSAGENLYVETDASGPANFAQPGLDGAGLVLQQYTETSNVNVAEEL 231

Query: 219 VYTSDGTTLFETVPRDINFEKM 240
           V        +E   + I     
Sbjct: 232 VNMITTQRAYEMNSKAIETSDQ 253


>gi|7514872|pir||S61455 flagellar hook protein flgE - Helicobacter mustelae  (fragment)
          Length = 454

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/380 (7%), Positives = 82/380 (21%), Gaps = 21/380 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +L       +              NI N +   +                          
Sbjct: 1   MLRSLWSGVSGMQAHQVALDVESNNIANVNTTGFKYSRATFVDMISQTKLIATSPHKGGL 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISK 106
                       N+          +     +        +                   +
Sbjct: 61  GGQNDVSVGLGVNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGE 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                          ++   + D+     +            R D  K I+    +    
Sbjct: 121 FLFDANGNLVTNGGYVVQGWMKDDLRNAEKISED-----DFFRVDTTKPIQNIQIDPAMM 175

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
           +      N +++    +        +   +     + + GI+ I  +++++     D   
Sbjct: 176 MPARASSNISLRANLNAGRHVDQVANVFGLGSTTKTPVDGINPIYDSHDNLTQKAEDFGA 235

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           LF      I   +     V+ +++ +  D    S      +   +I        S +   
Sbjct: 236 LFTQSGDAIGLTENQGIWVSYKTSEMVNDIEATSGESSIEINHTRISFTNDSAASGISSV 295

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
               + +  +   +  E     G         +    +  + ++    +       +  S
Sbjct: 296 VAAQNAINALKQKTGVEAFVDNGMLRLQNKNNMDGDAEVKNIRITADGTGAFANFIEGDS 355

Query: 347 NPSFLRDGGSVSKKFLWNVK 366
           + +  R   + S        
Sbjct: 356 DITAFRYRYTTSASPDSGTG 375


>gi|307131607|ref|YP_003883623.1| flagellar basal-body rod protein flgG [Dickeya dadantii 3937]
 gi|306529136|gb|ADM99066.1| Flagellar basal-body rod protein flgG [Dickeya dadantii 3937]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  S     N Q  ++  F             N+    
Sbjct: 94  DLAIKGAGFFQVLMPDGTTSYTRDGSFQQDSNGQLVTSSGFQVQPAITIPANSSNLTVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A       L     N     E   S +           
Sbjct: 154 DGVVTVTQQGQTAPVQIGQLNLAMFINEAGLENLGENLYA--ETASSGAPTQSTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             I + +  T  VN+ EEL  +I+ +++Y I++K I  TD+MLQ L + 
Sbjct: 212 GLIYQKFVETSNVNVAEELVSMIQTQRAYEINSKAISSTDQMLQKLTQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 30/149 (20%), Gaps = 21/149 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   N        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + +H   S      +                   +     
Sbjct: 61  TLPSGLQLGTGVR---PVATERIHTQGSFSETGNVKDLAIKGAGFFQVLMPDGTTSYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              +          S   +   +   A  
Sbjct: 118 GSFQQDSNGQLVTSSGFQVQPAITIPANS 146


>gi|296534160|ref|ZP_06896654.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC
           49957]
 gi|296265515|gb|EFH11646.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC
           49957]
          Length = 262

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + R+       +   + +       +    +   +    +  S  +       +   F 
Sbjct: 76  AIYRIGAQGDLSQTQNSFDLAIRGNGYFPVQMPTGETAYTRAGSFGLSDAGMIVTADGFQ 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G V      +V   A    L+     +  +N     +        L     N   +L
Sbjct: 136 VGAGIVIPAGARDVTINATGEVLVKIDGQAALQNVGQLQLGTFPNEGGLEAIGDNM--FL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S    L       +  + + Y  T  VN+ +E++ LI  +++Y +++K+I  +D+M
Sbjct: 194 ETPASGGVTLGNPGAAGYGQVLQGYLETSNVNVVQEITALITAQRAYEMNSKVITASDEM 253

Query: 472 LQTL 475
           L TL
Sbjct: 254 LSTL 257



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/275 (8%), Positives = 62/275 (22%), Gaps = 21/275 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
             N A             I  NI N     Y RR                      +++ 
Sbjct: 3   SLNIAGTGMMAQQTNVEVISNNIANMSTTAYKRRRAEFQ---------------DLLYEN 47

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYISKLRDSLESYSKNLSED 121
           +    S +  Q  +L S   L   +              +   +    ++        + 
Sbjct: 48  LRRTGSQSSDQGTVLPSGAQLGLGVRTAAIYRIGAQGDLSQTQNSFDLAIRGNGYFPVQM 107

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN--LRRFLSELTVVNDAIKF 179
             G+T    A     +           +  A   I     +  +      L  ++     
Sbjct: 108 PTGETAYTRAGSFGLSDAGMIVTADGFQVGAGIVIPAGARDVTINATGEVLVKIDGQAAL 167

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
           +   +     F ++  +     +  +                  G  L   +        
Sbjct: 168 QNVGQLQLGTFPNEGGLEAIGDNMFLETPASGGVTLGNPGAAGYGQVLQGYLETSNVNVV 227

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
                + +      ++  V++++        +++ 
Sbjct: 228 QEITALITAQRAYEMNSKVITASDEMLSTLSRMRG 262


>gi|194432508|ref|ZP_03064795.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012]
 gi|194419395|gb|EDX35477.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012]
 gi|332092914|gb|EGI97982.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 155-74]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSISIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGGRS---VATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|332140548|ref|YP_004426286.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550570|gb|AEA97288.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 262

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 3/213 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+  A  ++   ++    +++    +            A +       +      D
Sbjct: 50  NQPGGRSSADTELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    ++    Q  ++ +       V+         ++   ++       +  +
Sbjct: 110 GTIAYSRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +    +       +IS+    T  VN+
Sbjct: 170 VLGQLNISDFVNPTGLQPTGQNL--FVETASSGAPIQGIPGLQGLGYISQGTLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            EEL  LI+ ++ Y +++K+I   D+ML  +++
Sbjct: 228 TEELVNLIESQRLYEMNSKVISSVDQMLGQVIQ 260



 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/165 (7%), Positives = 38/165 (23%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PEN------ 49
           +      ++   + A    A +  N+ NA    + +   +           P        
Sbjct: 1   MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                    +     +  K      L    +A+      + +  + +             
Sbjct: 61  ELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQ------PDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +   + +          L +  +   E+  Q   +   E+ 
Sbjct: 115 SRNGQFSLNDQGQIVTSGAGFLLQPEVAIPEDAQQITISQDGEIS 159


>gi|297570291|ref|YP_003691635.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926206|gb|ADH87016.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/182 (7%), Positives = 44/182 (24%), Gaps = 2/182 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +         + +          +     +              +    +  R     +
Sbjct: 81  FTQGSIHETGNDLDLAVEGRGFFQVIRDGEEFYTRSGNFTRDADGFIVTQNGDRLQPEFA 140

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                   ++     +                +        L     N   +     S  
Sbjct: 141 IPADTVTLSVGTDGLIQAKNAAQEIIAEGQLTLHNFINPGGLRAEGGNL--FRPTEASGD 198

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                        I +++     V++ EEL  LI  ++++ +++K +   D++L+     
Sbjct: 199 PIESDPGTDGAGVILQNFIEVSNVDVTEELVNLIITQRAFEMNSKSVQTADQLLEVANTL 258

Query: 479 VK 480
            +
Sbjct: 259 KR 260



 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/147 (7%), Positives = 24/147 (16%), Gaps = 14/147 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           ++               Q  +I  N+ N +   + +                        
Sbjct: 1   MIRALYSGTTGMRGQQLQLDTISNNLANVNTAGFKKSRVQFEDLYYQEMRAVGVETVDGG 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            V    Q                 +I +                                
Sbjct: 61  QVPSGIQVGLGVIATSTQKLFTQGSIHETGNDLDLAVEGRGFFQVIRDGEEFYTRSGNFT 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV 135
              + +    + D L       A+ V 
Sbjct: 121 RDADGFIVTQNGDRLQPEFAIPADTVT 147


>gi|206603525|gb|EDZ40005.1| Flagellar basal body rod protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 261

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 9/144 (6%), Positives = 22/144 (15%), Gaps = 28/144 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A +           I  N+ N +   + R+                       
Sbjct: 1   MFRSLWNAASGMEAQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLG 60

Query: 46  --SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
             SP  + V                     ++ +        F  +            + 
Sbjct: 61  NQSPTGMQVGLGVRSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQI------SLPDGRTA 114

Query: 101 THYISKLRDSLESYSKNLSEDILG 124
                      +            
Sbjct: 115 YTRDGTFSIDGQGRLVTQDGLPTN 138



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           ++       L     N   ++E   S    L          +   +     VN+ EEL  
Sbjct: 176 LSQFVNPAGLESRGDNL--FMETAASGQPQLSNPGTNGAGRLQSGFLEASNVNVAEELVN 233

Query: 451 LIKVEQSYNISNKLIMFTDKML 472
           ++  +++Y +    I   ++ML
Sbjct: 234 MVIGQRAYQMDATGIRTVNRML 255


>gi|253702499|ref|YP_003023688.1| hypothetical protein GM21_3913 [Geobacter sp. M21]
 gi|251777349|gb|ACT19930.1| protein of unknown function DUF1078 domain protein [Geobacter sp.
           M21]
          Length = 294

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 57/221 (25%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
           S+     V    I+                  +    L  + + +        N  G  +
Sbjct: 74  STQSSENVTDLAIQGNSFFALKPSTAAAPVARQSDAFLSRAGAFQTDSNLYLVNPDGYQV 133

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
            D   +    L    + T         + + L    +                       
Sbjct: 134 LDTAGNPIQFLDTKAAPTTDFGKVLSIDNTGLITYLATDGITQNYYSASGAVGVATTPAA 193

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +       A       +      +      + +       K   V   I  +    
Sbjct: 194 ATAAEKIAVVTAADTTGLKKVGGSLYQATTDAGVSTAAFSQAANKPNGVSETILSNTLEQ 253

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V+L  E   +I  +++Y+ ++K I  +D+M Q +L  ++
Sbjct: 254 STVDLANEFVKMITTQRAYSANSKTITTSDQMTQEVLNLIR 294



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 42/172 (24%), Gaps = 10/172 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52
           MS+ +      +      +    I  NI N +   Y    T+ +                
Sbjct: 1   MSVTSALYTGVSGLLQNGEAMNVIGNNISNVNTIGYKGARTLFSDMLSQNVGNNSQIGKG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDS 110
           V  +            +  +         SF AL      +     +++        +  
Sbjct: 61  VQMQVVQNVFSQGSTQSSENVTDLAIQGNSFFALKPSTAAAPVARQSDAFLSRAGAFQTD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              Y  N     +  T  +  + +      +    + +  D    I    ++
Sbjct: 121 SNLYLVNPDGYQVLDTAGNPIQFLDTKAAPTTDFGKVLSIDNTGLITYLATD 172


>gi|87119674|ref|ZP_01075571.1| Flagella basal body rod protein [Marinomonas sp. MED121]
 gi|86165150|gb|EAQ66418.1| Flagella basal body rod protein [Marinomonas sp. MED121]
          Length = 261

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 2/186 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +              +       F    + D +    +     +       ++  FL
Sbjct: 76  ATQKDFSEGDYNVTDRDLDVAIQGQGFFQILMPDGNMGYTRDGQFQLNSEGDLVTSSGFL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            +      +   +V         I     S ++      +AG      L    +N   ++
Sbjct: 136 VEPQVTIPQDAMSVTIGDDGTVSIVRQGASESEGVGQLSLAGFINPEGLSSIGQNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E + S +  + +       ++ ++   T  VN  EEL  LI  ++ Y +++K++   D M
Sbjct: 194 ETSASGAPIIDVPGTSALGNVRQNMVETSNVNSVEELVSLITAQRGYEMNSKVVSAADGM 253

Query: 472 LQTLLE 477
           +  +++
Sbjct: 254 MSFVIQ 259



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/165 (7%), Positives = 36/165 (21%), Gaps = 33/165 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +   +Q + I  N+ N     + +   +                    
Sbjct: 1   MHPALWVSKTGLSAMDKQLSVISNNLANVSTTGFKKDRAVFEDLLYHTVQQPGGLQSQNT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +   K+  +   +     +      Q F  +           N
Sbjct: 61  QLPSGLQMGAGVRVSATQ---KDFSEGDYNVTDRDLDVAIQGQGFFQIL------MPDGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                  + + + E      S  ++   V    + +         
Sbjct: 112 MGYTRDGQFQLNSEGDLVTSSGFLVEPQVTIPQDAMSVTIGDDGT 156


>gi|310764858|gb|ADP09808.1| Flagellar basal-body rod protein, FlgG [Erwinia sp. Ejp617]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 74/253 (29%), Gaps = 6/253 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +  N + +++      S        V        + +   +A  Q           
Sbjct: 11  GLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQTTLPTGMQLGT 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---VNPQYR 345
            +  +A   + +         + +          ++  D         +           
Sbjct: 71  GVATVATQRMHTQGSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNENGQMVT 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +  + L+   +V            G          +  +      +A    +  L     
Sbjct: 131 AEGNPLQPDITVPADAQKLTVGEDGIVTATVPGQAAP-QQIGQLTLANFINDAGLESLGG 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   ++E   S + +           +   Y  T  VN+ EEL  +I+V+++Y I++K +
Sbjct: 190 NL--YVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELVTMIQVQRAYEINSKAV 247

Query: 466 MFTDKMLQTLLEG 478
             +D+MLQ L + 
Sbjct: 248 SASDQMLQRLAQL 260



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/245 (7%), Positives = 51/245 (20%), Gaps = 37/245 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N  +  + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V  +  +       L             + F  ++           
Sbjct: 61  TLPTGMQLGTGVATVATQRMH---TQGSLTQTGRDYDMAIQGKGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +          +          + L   +   A+               +   A  +   
Sbjct: 112 TAYTRDGSFSLNENGQMVTAEGNPLQPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIG 171

Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           +++         L  L          + + ++A   +D    L  +  E   ++      
Sbjct: 172 QLTLANFINDAGLESLGGNLYVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELV 231

Query: 215 NDMVV 219
             + V
Sbjct: 232 TMIQV 236


>gi|289679025|ref|ZP_06499915.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5]
          Length = 137

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 2/136 (1%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
           Q+ +  S                  +     L   + +   K+     +A       L  
Sbjct: 3   QHNATSSRSAAYVDGHSAGELKSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQP 62

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
             R+   W     S   +  +        I         V L +EL  LI+ + +Y  ++
Sbjct: 63  --RSDTRWTATADSGVAEYDVPGVGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANS 120

Query: 463 KLIMFTDKMLQTLLEG 478
           K I     ++QTL++ 
Sbjct: 121 KAISTEVTLMQTLIQS 136


>gi|332533173|ref|ZP_08409042.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037455|gb|EGI73909.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 262

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 63/208 (30%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++     ++    +            + +       F      D
Sbjct: 50  NQPGGRSSQDTEMPSGLMLGAGAKVVANQKEFTQGNMLTTENSLDWMISGEGFFEVLQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNK 384
            +    +    T   + +  ++ +       ++         ++   ++       + N 
Sbjct: 110 GNIAYSRNGQFTTDGDGRIVTSGAGYVIQPEMNVPDDAQSITVSQDGEVSVRVAGQADNV 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N     E   S +             I +    T  VN+
Sbjct: 170 VIGQLTISDFINPSGLEPIGQNLYT--ETAVSGAPVQGNPGVEGLGSIIQGSLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+M+
Sbjct: 228 TEELVNLIETQRIYEMNSKVISAVDEMM 255



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/165 (6%), Positives = 36/165 (21%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      + I  N+ NA    Y +   +                    
Sbjct: 1   MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60

Query: 46  -SPEN---VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P            +  K      +    +++      + F  + +         N   
Sbjct: 61  EMPSGLMLGAGAKVVANQKEFTQGNMLTTENSLDWMISGEGFFEVLQ------PDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +     +          + +  ++  ++      +   EV 
Sbjct: 115 SRNGQFTTDGDGRIVTSGAGYVIQPEMNVPDDAQSITVSQDGEVS 159


>gi|308273544|emb|CBX30146.1| Flagellar basal-body rod protein flgG [uncultured Desulfobacterium
           sp.]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 2/116 (1%)

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
             ++     +                +        L     N       + S        
Sbjct: 147 TISIDKSGTVTAFGPSGQGTVVGVIELHSFTNPAGLFSMGHNLYRK--TDASGDAIAAAP 204

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  I++ +     V++ EE+  +I  +++Y +S+K I   D MLQ      +
Sbjct: 205 GSDGMGTIAQGFIEMSNVDVVEEMVAMIMAQRAYEVSSKSIQTADNMLQMANNIKR 260



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 7/155 (4%), Positives = 31/155 (20%), Gaps = 14/155 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSENK 60
           +L     A +  +        I  N+ N +   + +                 +  +   
Sbjct: 1   MLRGMWSAASGMDAQKMMIDVISNNLANVNTVGFKKSRPDFQDLMYQTMSQGGSTTTSGD 60

Query: 61  NM------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            +                         + +         +        +          +
Sbjct: 61  QIPGGIQVGMGTMPVSVQKMFMQGDFKETKNELDLSIEGKGFFKVISNDEEVYTRAGNFK 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
              +      + + L   +   ++ +  + + S  
Sbjct: 121 MDKDGNICTPNGEKLQPAMTIPSDTMTISIDKSGT 155


>gi|15639944|ref|NP_219397.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189026183|ref|YP_001933955.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323281|gb|AAC65915.1| flagellar basal-body rod protein (flgG-1) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018758|gb|ACD71376.1| flagellar basal-body rod protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060315|gb|ADD73050.1| flagellar basal-body rod protein FlgG [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 264

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              N  L     N         S            F  +   +     V+   E+  +I 
Sbjct: 180 FANNAGLAAEGGNVFTQ--TPASGQPIPGRPGFEGFGKVEHKFLEMSNVSTVSEMVNMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++Y  ++K I  +D ML T +   +
Sbjct: 238 AQRAYEFNSKAIQTSDNMLGTAVALKR 264



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/154 (7%), Positives = 29/154 (18%), Gaps = 33/154 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N       ++  N+ N +   + R+                       
Sbjct: 1   MVRSLWTAATGMNGQQANIDTVANNLANVNTSGFKRQRAEFEDLLYQTIRTAGTPATEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +   +          L     +       + F  + +      +   
Sbjct: 61  LTPVGVRMGHGVKLAATQRL---FEQGSLQHTGVSGDVAIAGEGFFRVLQ------YDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
                    +   E      +   L   +I    
Sbjct: 112 YAYTRDGSFKVDAERQLVTSNGLRLVPEIIFPEN 145


>gi|50120641|ref|YP_049808.1| flagellar basal body rod protein FlgG [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611167|emb|CAG74613.1| flagellar basal-body rod protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  +  +  N Q  ++  +              +    
Sbjct: 94  DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +     +  L     N   +LE   S + +         
Sbjct: 154 DGIVSVKVQGQAATNQIGQLTLTTFINDSGLESMGENL--YLETASSGAPNETNPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 212 GLLYQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/211 (8%), Positives = 44/211 (20%), Gaps = 36/211 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   N        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +            ++       Q F  ++           
Sbjct: 61  MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
           +        +          S   +   +   A      +      + +VQ   A     
Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                + +     E    N  ++  ++   +
Sbjct: 172 QLTLTTFINDSGLESMGENLYLETASSGAPN 202


>gi|227328340|ref|ZP_03832364.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|253688970|ref|YP_003018160.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755548|gb|ACT13624.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  +  +  N Q  ++  +              +    
Sbjct: 94  DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +     +  L     N   +LE   S + +         
Sbjct: 154 DGIVSVKVQGQAATNQIGQLTLTTFINDSGLESMGENL--YLETASSGAPNETNPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 212 GLLYQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/211 (8%), Positives = 44/211 (20%), Gaps = 36/211 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   N        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +            ++       Q F  ++           
Sbjct: 61  MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
           +        +          S   +   +   A      +      + +VQ   A     
Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                + +     E    N  ++  ++   +
Sbjct: 172 QLTLTTFINDSGLESMGENLYLETASSGAPN 202


>gi|83312594|ref|YP_422858.1| flagellar basal body rod protein FlgG [Magnetospirillum magneticum
           AMB-1]
 gi|82947435|dbj|BAE52299.1| Flagellar basal body rod protein [Magnetospirillum magneticum
           AMB-1]
          Length = 261

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 2/173 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       +    +   +    +  S  +       ++  +              V 
Sbjct: 91  NTLDMAIQGKGYFQIKLPSGETAYTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             +    ++       ++      +A    +  L     N   ++E   S    +    +
Sbjct: 151 VDSTGQVIVKQDGQVQSQIKGQLTLATFANDAGLEARGGNL--FMETPASGQPVVQTPGK 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             F  I + +  T  VN+  E++ LI  +++Y +++K+I  +D+ML T+ +  
Sbjct: 209 PGFGTILQGFLETSNVNVVAEVTNLIGAQRAYEMNSKVIQASDEMLSTINQMK 261



 Score = 59.7 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 34/181 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             N A             I  NI N +   + RR                          
Sbjct: 3   SLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTGTIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V         +      + +  + +      + +  +            + 
Sbjct: 63  PTGVQLGLGVKTTAVYRITEQ---GSVQSTDNTLDMAIQGKGYFQI------KLPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  + S E          +   V   ++ V    +++ + + K       +I+ ++
Sbjct: 114 YTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVTVDSTGQVIVKQDGQVQSQIKGQL 173

Query: 161 S 161
           +
Sbjct: 174 T 174


>gi|224534580|ref|ZP_03675156.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S]
 gi|224514257|gb|EEF84575.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S]
          Length = 265

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFVNPAGLNAIGSNL--FKETAGSGQEIAGIPGSEGMGRLRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          ++     A +          +I  N+ N +   + +               TQ       
Sbjct: 1  MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56

Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89
           +  L    + +G    + + + + E 
Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83


>gi|197122909|ref|YP_002134860.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K]
 gi|220917701|ref|YP_002493005.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196172758|gb|ACG73731.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K]
 gi|219955555|gb|ACL65939.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 266

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                  L     N +  L+   S         +     +++ +     V   EE+  +I
Sbjct: 182 TFPNPGGLEAAGGNLL--LQTAASGEAVDARPGEQGAGTLAQGFLEGANVKAVEEMIDMI 239

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEG 478
             +++Y ++++++   D+MLQ L   
Sbjct: 240 ATQRAYELNSRVVQTADQMLQRLTSL 265



 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 25/152 (16%), Gaps = 33/152 (21%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A         +   I  N+ N     + R+                          
Sbjct: 9   SLYTAATGMEAQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETIHGAEAPDPRGGTAP 68

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                   V   +            L    +A+        F  ++          +   
Sbjct: 69  AALQVGLGVRTGSTVRN---FGQGELLTTGNALDLAIEGDGFFRVQ------RPDGSLAY 119

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 R            +++   +    E 
Sbjct: 120 TRAGNFRVDAAGRLVTARGEVVDPEITFPPET 151


>gi|146311248|ref|YP_001176322.1| flagellar basal body rod protein FlgG [Enterobacter sp. 638]
 gi|145318124|gb|ABP60271.1| flagellar basal-body rod protein FlgG [Enterobacter sp. 638]
          Length = 260

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANSLSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGSGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANSL 147


>gi|86157777|ref|YP_464562.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774288|gb|ABC81125.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 266

 Score = 70.4 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                  L     N +  L+   S         +     +++ +     V   EE+  +I
Sbjct: 182 TFPNPGGLEAAGGNLL--LQTAASGEAVDARPGEQGAGTLAQGFLEGANVKAVEEMIDMI 239

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEG 478
             +++Y ++++++   D+MLQ L   
Sbjct: 240 ATQRAYELNSRVVQTADQMLQRLTSL 265



 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 25/152 (16%), Gaps = 33/152 (21%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A         +   I  N+ N     + R+                          
Sbjct: 9   SLYTAATGMEAQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETVRGAEAPDPRGGTAP 68

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                   V   +            L    +A+        F  ++          +   
Sbjct: 69  APLQVGLGVRTGSTVRN---FGQGELLTTGNALDLAVEGDGFFRVQ------RPDGSLAY 119

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 R            +++   +    E 
Sbjct: 120 TRAGNFRVDAAGRLVTARGEVVDPEITFPPET 151


>gi|83594175|ref|YP_427927.1| flagellar basal body rod protein FlgG [Rhodospirillum rubrum ATCC
           11170]
 gi|83577089|gb|ABC23640.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 261

 Score = 70.4 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 4/211 (1%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                     +     QL    +        +     ++ N   L I        +    
Sbjct: 51  AGSNSSDTGTIVPTGVQLGLGVKTAAVYRITEQGSVTSTNNALDLAIQGKGYFQIDLPSG 110

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP-DLINHYCDSFNKNFIFDPV 391
             + T     Q   N   +   G           N      +         +        
Sbjct: 111 ETAYTRDGAFQLSPNGEIVTHDGYRVTGLGAIPTNAESITINPTGEVLYKIDGQTALVNA 170

Query: 392 AGINTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             I T +   +   N+IG     E   S +  + +   V F  I + Y  +  VN+  E+
Sbjct: 171 GQIQTAIFPNDAGLNAIGDNYLTETAGSGAPTVGVPGSVGFGTILQGYLESSNVNVVSEI 230

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + LI  +++Y +++K+I  +D+ML T+    
Sbjct: 231 TELISAQRAYEMNSKVITTSDEMLSTISRMK 261



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 3/204 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
             N               I  NI N +   Y RR               +R+ + +    
Sbjct: 3   ALNIGATGMLAQQTNVEVISNNIANMNTTAYTRRRAEFHDLLYQ---NLRRAGSNSSDTG 59

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +      +G      +   + E  S     N        K    ++  S   +    G 
Sbjct: 60  TIVPTGVQLGLGVKTAAVYRITEQGSVTSTNNALDLAIQGKGYFQIDLPSGETAYTRDGA 119

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +    E+V +       +  I  +A+         +   +   T + +A + +TA   
Sbjct: 120 FQLSPNGEIVTHDGYRVTGLGAIPTNAESITINPTGEVLYKIDGQTALVNAGQIQTAIFP 179

Query: 186 DAHDFLDQRDVLLQKISEIIGIST 209
           +        D  L + +     + 
Sbjct: 180 NDAGLNAIGDNYLTETAGSGAPTV 203


>gi|255322391|ref|ZP_05363537.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277]
 gi|255300764|gb|EET80035.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277]
          Length = 262

 Score = 70.4 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 58/216 (26%), Gaps = 2/216 (0%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                    A  +    +      +   + ++    + ++     +       F    + 
Sbjct: 49  MEYAGTATSATTKSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLP 108

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D      +  +  +       ++  ++             V         +    ++   
Sbjct: 109 DGTTAYTRNGAFKLDSEGTIVNSDGYVLQPQMTIPADATQVSVGTDGTVSVLQPGNTEMT 168

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L     N   +L    S    +          I + +     V L
Sbjct: 169 QVGRIELANFINPAGLHSMGDNL--YLPTGSSGEVVVGTAGLDGLGTIRQGFVEMSNVQL 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE++ LI  +++Y  ++K I  +D ML  +    +
Sbjct: 227 VEEMTDLITGQRAYEANSKAITTSDDMLSIVNSLKR 262



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 35/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q      NI N +   Y +                        
Sbjct: 1   MMRSIYSAATGMIAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K          S+ +        F  ++           +  
Sbjct: 61  KSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   E    N    +L   +   A+    +  T          + +      I 
Sbjct: 115 TRNGAFKLDSEGTIVNSDGYVLQPQMTIPADATQVSVGTDGTVSVLQPGNTEMTQVGRIE 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|268680164|ref|YP_003304595.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618195|gb|ACZ12560.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 262

 Score = 70.4 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/254 (9%), Positives = 63/254 (24%), Gaps = 4/254 (1%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
             + +    +  ++      +          +      +                     
Sbjct: 11  GMIAQQTQIDTTSNNISNVNTIGYKKQRAEFADLMYQTMTYAGTSTSATSTSPTGIEVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   A     +         + +          I+  D       + +  ++ +     
Sbjct: 71  GVRPTAIAKQFTQGNFKETGNSLDVAITGNGFFQIQLPDGTTGYTRNGSFKLDSEGSVVN 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARN 406
           S                +   G   +++                +A       L     N
Sbjct: 131 SDGYRLLPELTIPEDATQITIGVNGVVSVLQAGQTETNEIGQIELANFINPAGLHSLGDN 190

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              ++  + S    +            + +     V L EE++ LI  +++Y  ++K I 
Sbjct: 191 --NYINTSASGDPIVSEPGLNGLGQTRQQFVEMSNVQLVEEMTDLITGQRAYEANSKAIT 248

Query: 467 FTDKMLQTLLEGVK 480
            +D+MLQT+    +
Sbjct: 249 TSDEMLQTVNALKQ 262



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 53/207 (25%), Gaps = 29/207 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           ++     A         Q  +   NI N +   Y ++                       
Sbjct: 1   MIRSLYTAATGMIAQQTQIDTTSNNISNVNTIGYKKQRAEFADLMYQTMTYAGTSTSATS 60

Query: 49  ----NVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                + V          K           +++        F  ++           +  
Sbjct: 61  TSPTGIEVGLGVRPTAIAKQFTQGNFKETGNSLDVAITGNGFFQIQ------LPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   E    N     L    T+ ++A ++    N     +Q  + + ++  ++E
Sbjct: 115 TRNGSFKLDSEGSVVNSDGYRLLPELTIPEDATQITIGVNGVVSVLQAGQTETNEIGQIE 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHD 186
           ++N        ++ ++     +AS   
Sbjct: 175 LANFINPAGLHSLGDNNYINTSASGDP 201


>gi|239834442|ref|ZP_04682770.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG
           3301]
 gi|239822505|gb|EEQ94074.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG
           3301]
          Length = 226

 Score = 70.4 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 56/212 (26%), Gaps = 2/212 (0%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
           S++               + +  +     Q   +  + I     +     +       + 
Sbjct: 8   STSPSGRQACPNQANQSIVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWF 67

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                  +    +  +     + Q  +      +           V              
Sbjct: 68  QIQSPTGETLYTRAGAFNKNPDGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQD 127

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +     +A       L     N   + E   S    + +     +  I + Y   
Sbjct: 128 QINQVDLGQLTLANFTNEAGLEPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEA 185

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 186 SNVDPVKEITDLITAQRAYEMNSKVIQAADEM 217


>gi|310816831|ref|YP_003964795.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare
           Y25]
 gi|308755566|gb|ADO43495.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare
           Y25]
          Length = 261

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 8/212 (3%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              +   D  +     QL    R    S          +     + I             
Sbjct: 51  AGTVAATDGTILPTGIQLGMGVRTTAVSPMLGQGAVQETGGSLDVAIEGQGYFEVALPDG 110

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKF-----LWNVKNLAGYPDLINHYCDSFNKNF- 386
            I  T     +   +   +  GG                 +    ++   + ++  + F 
Sbjct: 111 RIGYTRDGALKLTGDGLIVTAGGLEVAPGIVIPEDAQSVAINADGEVYASFTNAVEQEFL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +A       L     N   +LE   S    + +  +     + + Y     V+   
Sbjct: 171 GQLNLAMFVNPRGLEAMGSNL--YLETAASGQPMVAVPGEDGLGTLRQGYLEQSTVDAVR 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           E++ LI  ++ Y +++K+I   D+ML  +++ 
Sbjct: 229 EVTDLIAAQRGYELNSKVISAADQMLAAMVQI 260



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 3/93 (3%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
          + + A         +   I  N+ N +   Y  R               QR+      D 
Sbjct: 3  ILDIAATGMLAQQTRVEVISNNLANMNTTAYNPRRAEFADLHYQ---QVQRAGTVAATDG 59

Query: 66 VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +      +G      +   +    +  +   +
Sbjct: 60 TILPTGIQLGMGVRTTAVSPMLGQGAVQETGGS 92


>gi|195953027|ref|YP_002121317.1| protein of unknown function DUF1078 domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932639|gb|ACG57339.1| protein of unknown function DUF1078 domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 583

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/444 (10%), Positives = 95/444 (21%), Gaps = 14/444 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV--------- 53
           +L  F  A +  +  +   + I  N+ NAD   Y   + +      NV V          
Sbjct: 1   MLPSFYNAISGLDAFNNYLSIISNNMSNADTIGYKAVNPIFENVVANVNVGINTLTDTLK 60

Query: 54  -TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH---YNNSPTHYISKLRD 109
            T       +    L+       Q             +          N       +   
Sbjct: 61  STIYGAGVIVDSTQLNWQLGNFEQTGNNTDLAIQGNGLFILQDPANAGNVFYTRNGQFTI 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLS 168
           S + Y  N     L    +D +  VV           Q+     D     + +NL     
Sbjct: 121 SQQGYMVNPDGLKLLGYKVDQSGSVVGTSLQPIYIIPQQPPKATDLITYQQPTNLNSTAP 180

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
            +T   + +   T +  +     D     ++  +          N        +   +  
Sbjct: 181 SITQAFNPLNTATFNYQNTLTTFDTLGNAIEGDTYFQKTGPNTWNYIYAENEKAAYYSNT 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  N       T  S  +  + +     +   S++    +     I  +       
Sbjct: 241 SGNVLYRNVAGTWQSTTISGGSLTWYNITTPPNTASSSIISTTVSPYYMISGTNSSGSMV 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
               +      +                 +   G    +  +   +S  I V     S+ 
Sbjct: 301 TDWVVDVTTSSTTISYVVNPTKPAGGTQEWDTIGSGAANGFVPYNLSSGIGVPIYTGSST 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
            +             N+   +           S+           +     +      S 
Sbjct: 361 IYAATALLNFDPNTGNITTSSTIGVYTYPTSSSYEYFIGAQNPLVLGDGNIVGNLNSASS 420

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHI 432
                           +      I
Sbjct: 421 QSTGGLAFGQLIGAKPTTSTSAGI 444



 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 84/345 (24%), Gaps = 12/345 (3%)

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD---FLDQR 194
           +   A   Q             I+      S   +      +   S  ++          
Sbjct: 246 YRNVAGTWQSTTISGGSLTWYNITTPPNTASSSIISTTVSPYYMISGTNSSGSMVTDWVV 305

Query: 195 DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           DV     +    ++            T         VP +++          S +     
Sbjct: 306 DVTTSSTTISYVVNPTKPAGGTQEWDTIGSGAANGFVPYNLSSGIGVPIYTGSSTIYAAT 365

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
             +    N G+      I        S    F    + +           +  +  S   
Sbjct: 366 ALLNFDPNTGNITTSSTIGVYTYPTSSSYEYFIGAQNPLVLGDGNIVGNLNSASSQSTGG 425

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                   I                   Q  S+ +        S   L NV  L+    +
Sbjct: 426 LA--FGQLIGAKPTTSTSAGIIDNSYITQDASDFTITASQDGYSLGNLVNVYVLSSDGTV 483

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           +  Y +  +       +A       L+E   N    +         + +      + I  
Sbjct: 484 VGVYSNGQSTPLYRVALAQFQDPNELIEKGSNLYTSIYT-----PTILLPGSA--DIIQS 536

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                  V++ +    L+  E+SY  + K++  +D +LQ  L  V
Sbjct: 537 GMLEQSNVDIAQAYIQLVTAERSYQANAKVVTSSDNVLQATLNMV 581


>gi|149375032|ref|ZP_01892805.1| Flagellar basal body rod protein [Marinobacter algicola DG893]
 gi|149360921|gb|EDM49372.1| Flagellar basal body rod protein [Marinobacter algicola DG893]
          Length = 262

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 2/185 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A+       E      +       F+   + D      +     +  N    +   +  
Sbjct: 77  TAKQFSQGNLEVTEQPLDMAVNGRGFMQILLPDGQIAYTRDGQFQLNSNGDIVNPDGYTL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +      +   N+               +   N     +        L     N   +  
Sbjct: 137 EPNINVPENATNITIGKDGTVSAVTDDQAAPVNLGEITLVDFINPQGLQAIGNNL--FKA 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N S               + +       V + EEL  +I  +++Y +++K++  TD+ML
Sbjct: 195 TNASGDPAEGEPGIGGLGTLEQGMVEASNVEVVEELVNMITTQRAYEMNSKVVSATDQML 254

Query: 473 QTLLE 477
           Q +  
Sbjct: 255 QFITN 259



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 50/210 (23%), Gaps = 29/210 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +      ++   +      ++I  N+ N +   + R   +                   +
Sbjct: 1   MHPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQIDRQPGGLNTQNS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L      +      + F  +               
Sbjct: 61  ELPSGLQLGTGVRIVGTAKQFSQGNLEVTEQPLDMAVNGRGFMQIL------LPDGQIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
               + + +      N     L     V +NA  +    + +   V   +A      E+ 
Sbjct: 115 TRDGQFQLNSNGDIVNPDGYTLEPNINVPENATNITIGKDGTVSAVTDDQAAPVNLGEIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           + +         + N+  K   AS   A  
Sbjct: 175 LVDFINPQGLQAIGNNLFKATNASGDPAEG 204


>gi|289679028|ref|ZP_06499918.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5]
          Length = 159

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 2/142 (1%)

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            +    Q  S    L+   +       +  N+    +L   Y +  ++      +     
Sbjct: 19  DMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATYTNGKSQVIGQTSLTSFAN 78

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              L +       W E   S              +I+        V+L  EL  LIK + 
Sbjct: 79  VQGLAQ--AGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQS 136

Query: 457 SYNISNKLIMFTDKMLQTLLEG 478
           +Y  + K I     ++QT ++ 
Sbjct: 137 NYQANAKTISTQSTIMQTTIQM 158


>gi|209964690|ref|YP_002297605.1| flagellar basal body rod protein FlgG [Rhodospirillum centenum SW]
 gi|209958156|gb|ACI98792.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW]
          Length = 261

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 2/172 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            A +       +    + D      +  S  +       +   +    G V  +   ++ 
Sbjct: 91  NALDLAINGQGYFQVELPDGQTAYTRAGSFQLNAEGTIVTADGYQLQPGLVVPENAVDIT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                  L+     +   N     +A       L     N +  LE   S +        
Sbjct: 151 VNPNGEVLVKLDGQTQPANIGQIQLATFPNPAGLEAIGDNLL--LESPASGNIIAGNPGA 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             F  + +    T  VN+  E++ LI  +++Y +++++I  +D+M+Q++ + 
Sbjct: 209 PGFGRVIQQALETSNVNIVSEITNLITAQRAYEMNSRVISTSDQMMQSISQM 260



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/165 (7%), Positives = 28/165 (16%), Gaps = 16/165 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50
             +               I  NI N     + R+                   + +   V
Sbjct: 3   SLSIGATGMLAQQLNVEVISNNIANMTTTGFKRQRAEFQDLLYQNMRRVGSTSSDAGTVV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q                  I             +     +     +        + 
Sbjct: 63  PSGVQIGAGVKTAAVYRINEQGNISVTGNALDLAINGQGYFQVELPDGQTAYTRAGSFQL 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           + E          L   ++     V    N +   + K+      
Sbjct: 123 NAEGTIVTADGYQLQPGLVVPENAVDITVNPNGEVLVKLDGQTQP 167


>gi|23015788|ref|ZP_00055555.1| COG4786: Flagellar basal body rod protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 261

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 2/173 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       +    +   +    +  S  +       ++  +              V 
Sbjct: 91  NTLDMAVQGKGYFQIKLPSGETAYTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             +    ++       ++      +A    +  L     N   ++E   S    +    +
Sbjct: 151 VDSTGQVIVKQDGQVQSQIKGQLTLATFANDAGLEARGGNL--FMETPASGQPVVQTPGK 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             F  I + +  T  VN+  E++ LI  +++Y +++K+I  +D+ML T+ +  
Sbjct: 209 PGFGTILQGFLETSNVNVVAEVTNLIGAQRAYEMNSKVIQASDEMLSTINQMK 261



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 34/181 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             N A             I  NI N +   + RR                          
Sbjct: 3   SLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTGTIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V         +      + +  + +      + +  +            + 
Sbjct: 63  PTGVQLGLGVKTTAVYRITEQ---GSVQSTDNTLDMAVQGKGYFQI------KLPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  + S E          +   V   ++ V    +++ + + K       +I+ ++
Sbjct: 114 YTRDGSFQLSPEGTIVTHEGYQVIPQVTIPSDAVGVTVDSTGQVIVKQDGQVQSQIKGQL 173

Query: 161 S 161
           +
Sbjct: 174 T 174


>gi|227112523|ref|ZP_03826179.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 260

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  +  +  N Q  ++  +              +    
Sbjct: 94  DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +     +  L     N   +LE   S + +         
Sbjct: 154 DGIVSVKVQGQAATNQIGQLTLTTFINDSGLESIGENL--YLETASSGAPNETNPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 212 GLLYQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/211 (8%), Positives = 44/211 (20%), Gaps = 36/211 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   N        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +            ++       Q F  ++           
Sbjct: 61  MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
           +        +          S   +   +   A      +      + +VQ   A     
Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                + +     E    N  ++  ++   +
Sbjct: 172 QLTLTTFINDSGLESIGENLYLETASSGAPN 202


>gi|271500068|ref|YP_003333093.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586]
 gi|270343623|gb|ACZ76388.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586]
          Length = 260

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D   +  +  S  +  N Q  ++  F             N+    
Sbjct: 94  DLAINGAGFFQVLMPDGTTQYTRDGSFQLDSNGQLVTSSGFQVQPAITIPANATNITVGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A       L     N     E   S +           
Sbjct: 154 DGVVTVTQQGQTAPVQVGQLNLAMFINEAGLQNMGENLYA--ETASSGAPTQSTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             I + Y  T  VN+ EEL  +I+ +++Y I++K I  TD+MLQ L + 
Sbjct: 212 GLIMQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSTDQMLQKLTQL 260



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 28/155 (18%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   N        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +       L    +A         F  +            
Sbjct: 61  TLPSGLQLGTGVRPVSTERIH---TQGGLTETGNAKDLAINGAGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +        +          S   +   +   A  
Sbjct: 112 TQYTRDGSFQLDSNGQLVTSSGFQVQPAITIPANA 146


>gi|300716220|ref|YP_003741023.1| flagellar basal-body rod protein [Erwinia billingiae Eb661]
 gi|299062056|emb|CAX59172.1| Flagellar basal-body rod protein [Erwinia billingiae Eb661]
          Length = 260

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       +    + D      +  S     N Q  +N  F             ++    
Sbjct: 94  DVAISGQGYFQVQMPDGTLAYTRDGSFQTDQNGQLVTNGGFPVQPAITVPANALSMTIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         ++    +  L     N   + E   S +           
Sbjct: 154 DGVVSVTQQGQTQPVQVGQLTLSTFINDAGLESKGENL--YQETQASGAPTDSTPGNNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+ML  L + 
Sbjct: 212 GLLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQL 260



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/156 (7%), Positives = 29/156 (18%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L+   S+       Q +  ++           
Sbjct: 61  TLPSGMQLGTGVRPVATERLH---TQGNLNKTDSSKDVAISGQGYFQVQ------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                    +              +   +   A  +
Sbjct: 112 LAYTRDGSFQTDQNGQLVTNGGFPVQPAITVPANAL 147


>gi|242238971|ref|YP_002987152.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703]
 gi|242131028|gb|ACS85330.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703]
          Length = 260

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                E+     +       F    + D      +  S  +  N Q  +   +       
Sbjct: 82  SQGNLEQTENTKDIAINGQGFFEVLMPDGTTAYTRDGSFQLDANGQLVTASGYTVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +         +     + +       ++       L     N   + E   S 
Sbjct: 142 IPTTAQTMTVARDGTVSVTLQGQTASTQVGQLTLSTFINPAGLQSLGENL--YQETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       Q     + + Y  T  VN+ EEL  +I+V+++Y I++K +  +D MLQ L +
Sbjct: 200 APTQSTPGQNGAGVLYQGYVETSNVNVAEELVSMIQVQRAYEINSKAVSTSDSMLQRLTQ 259

Query: 478 G 478
            
Sbjct: 260 I 260



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/236 (7%), Positives = 49/236 (20%), Gaps = 19/236 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++     A+   +        I  N+ N     + R+  +                +   
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSDQT 60

Query: 62  --------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                         +  + LH+  +    +         +           +        
Sbjct: 61  NLPSGLQLGTGVRPVSTERLHSQGNLEQTENTKDIAINGQGFFEVLMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLR 164
           +          S   +   +               T +  +Q   A          + + 
Sbjct: 121 QLDANGQLVTASGYTVQPAITIPTTAQTMTVARDGTVSVTLQGQTASTQVGQLTLSTFIN 180

Query: 165 RFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
               +    N       + +   +    +   VL Q   E   ++      + + V
Sbjct: 181 PAGLQSLGENLYQETQSSGAPTQSTPGQNGAGVLYQGYVETSNVNVAEELVSMIQV 236


>gi|219670133|ref|YP_002460568.1| hypothetical protein Dhaf_4123 [Desulfitobacterium hafniense DCB-2]
 gi|219540393|gb|ACL22132.1| protein of unknown function DUF1078 domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 329

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 32/149 (21%), Gaps = 26/149 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------------- 49
           + N A             +  N+ N +   Y  +      +                   
Sbjct: 3   ILNTAATGVRAQQTALDVLGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQPVGE 62

Query: 50  ----VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                  V   + + +    ++    +        + F  +            S    + 
Sbjct: 63  RIDVGAGVIYPTIDTDYRQGIIRETENPFDLAIDGEGFFPV------RTANGESRYTRVG 116

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                 +    N    IL   +  +A ++
Sbjct: 117 NFELDSQGKLVNSDGYILEVKIPADAMDL 145



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/336 (11%), Positives = 85/336 (25%), Gaps = 18/336 (5%)

Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRD 195
               +A    + +  A   +   +SN+     +   VN            +         
Sbjct: 2   RILNTAATGVRAQQTALDVLGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQPVG 61

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
             +   + +I  +        ++  T +   L             N  +  +      +D
Sbjct: 62  ERIDVGAGVIYPTIDTDYRQGIIRETENPFDLAIDGEGFFPVRTANGESRYTRVGNFELD 121

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
                 N    + + KI A                 +    ++G     DP        P
Sbjct: 122 SQGKLVNSDGYILEVKIPADAMDLYVDETGNITGFIDDEERVLGRVVVNDPEGEGYPVGP 181

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                   +        G            +    +   G +S     + + L     + 
Sbjct: 182 ID----MDELGRPLDWNGDILPTAFAVPEGAEDVQISTEGILSATIDGSRQTLGQINIIT 237

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               +   ++      A     VT  E        +    S         +     +   
Sbjct: 238 FANPEGLVRDGDNLYFAPDAAGVTGDEL-------VGTPGSQVE------ERTLGKLKTQ 284

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 VNL   ++ +I+V+++Y ++ ++I   D+M
Sbjct: 285 SLEQSNVNLASAMTEMIQVQRAYQLNARMITNGDQM 320


>gi|237751360|ref|ZP_04581840.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879]
 gi|229372726|gb|EEO23117.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879]
          Length = 600

 Score = 70.1 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/394 (8%), Positives = 102/394 (25%), Gaps = 17/394 (4%)

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            +N   +  S       + +    + I   T      EV     T      +       +
Sbjct: 214 TSNGVFNEASFFNQDFNALANRDGDMIRPNTFPKADIEVTMPDGTVQIAHYEYGDGTSSQ 273

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
            +              ++            + +  +D + VL+ K +    +   +  N 
Sbjct: 274 GKFHT-----IGQLQYLIKRDTGLDLELNRNPNGSIDPKGVLVLKNNTNTPVKVKLSGNF 328

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              ++ S                        +              N+   V  G  +  
Sbjct: 329 FERLHLSGEMDNMGKNDYLAGTNLSVPSFTNTTEIFDEGGKKYAMHNEYFLVNAGDSEGT 388

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
            ++ ++             R+LI S  ++  I  +          +        +   +S
Sbjct: 389 QKMPETWNVRSYIHEFSGNRMLISSEVKEGKIFFDPSGKAEADDMEIPFLGKKSVKLTLS 448

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            +     +   +            +   +   +     +   + +   +      +A   
Sbjct: 449 RSTNKVYK---DSGVNDTEQDGKNRGEMSNIRINNEGIISVAFTNGQTEAIGRVGLAMFA 505

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDL---------HMKSQVVFNHISESYSNTVGVNLQE 446
            +  L +   N         +                 S +    + + Y  T  V++ +
Sbjct: 506 NDQGLKKVGGNLFALNPSTINGEVTQLSGNPKLVWGEDSNLKQGKVLQGYVETSNVDVAD 565

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            L+ LI +++ Y+++ K    +D +++  +   +
Sbjct: 566 ALTNLILMQRGYSMNAKAFTTSDDLIKEAINLKR 599



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/481 (9%), Positives = 111/481 (23%), Gaps = 36/481 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49
           +      A +          SI  NI N +   Y   D                +    N
Sbjct: 1   MNDTMLNAVSGIKTHQFGLDSISNNIANVNTVGYKANDPEFKTLFSRSMDSMNASTVTNN 60

Query: 50  VTVVTQRSENKNMFD--KVLHAHSSAIGQQRLLQSFEALKEMMSAD--------DHYNNS 99
                    + N+      L    S        + +  + +             D  + +
Sbjct: 61  DFSYGVTGASNNVITKMGNLKKADSDTSVAYTGKGWFVVGKNKEGQFEIGEDNFDVSDEN 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT------------SAREVQK 147
                       + Y  N     L    +          +               + +  
Sbjct: 121 YFTKNGDFTIDSDGYLVNSEGYYLYGVNLGKINGNNFKASQDPEKDYKELAKGVMKPISI 180

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
               + + +E    +L   L+    + + +   T++          +D       +   I
Sbjct: 181 PPQISYQPVETTKVDLSVNLNRTGELKNVVLAHTSNGVFNEASFFNQDFNALANRDGDMI 240

Query: 208 STIVRNNNDMVVYTSDGTT-LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
                   D+ V   DGT  +      D    +   +T+      I  D  +      + 
Sbjct: 241 RPNTFPKADIEVTMPDGTVQIAHYEYGDGTSSQGKFHTIGQLQYLIKRDTGLDLELNRNP 300

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
                 K +L ++++     + +L       +    E D +  N              + 
Sbjct: 301 NGSIDPKGVLVLKNNTNTPVKVKLSGNFFERLHLSGEMDNMGKNDYLAGTNLSVPSFTNT 360

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                +G  +    N  +  N         + + +           + +    +      
Sbjct: 361 TEIFDEGGKKYAMHNEYFLVNAGDSEGTQKMPETWNVRSYIHEFSGNRMLISSEVKEGKI 420

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
            FDP      +   + +       L  +RS +               ++      + +  
Sbjct: 421 FFDPSGKAEADDMEIPFLGKKSVKLTLSRSTNKVYKDSGVNDTEQDGKNRGEMSNIRINN 480

Query: 447 E 447
           E
Sbjct: 481 E 481


>gi|261821155|ref|YP_003259261.1| flagellar basal body rod protein FlgG [Pectobacterium wasabiae
           WPP163]
 gi|261605168|gb|ACX87654.1| flagellar basal-body rod protein FlgG [Pectobacterium wasabiae
           WPP163]
          Length = 260

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  +  +  N Q  ++  +              +    
Sbjct: 94  DVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +     +  L     N   +LE   S + +         
Sbjct: 154 DGIVSVKLQGQAATNQIGQLTLTTFINDSGLESMGENL--YLETASSGAPNESNPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 212 GLLFQKYVETSNVNVAEELVSMIQTQRAYEINSKAISSSDQMLQKLTQL 260



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/211 (7%), Positives = 44/211 (20%), Gaps = 36/211 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   N        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+    +            ++       Q F  ++           
Sbjct: 61  MLPSGLQLGTGVRPVSTERIH---TQGTFSETGNSKDVAIKGQGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
           +        +          S   +   +   A      +      + ++Q   A     
Sbjct: 112 TAYTRDGAFQLDGNGQLVTSSGYQVQPAITVPANATELNIGRDGIVSVKLQGQAATNQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                + +     E    N  ++  ++   +
Sbjct: 172 QLTLTTFINDSGLESMGENLYLETASSGAPN 202


>gi|259907636|ref|YP_002647992.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96]
 gi|224963258|emb|CAX54742.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96]
 gi|283477478|emb|CAY73394.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM
           12163]
          Length = 260

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 2/170 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F    + D      +  S ++  N Q  +                  +   
Sbjct: 93  YDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVG 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                       +  +      +A    +  L     N   ++E   S + +        
Sbjct: 153 EDGIVTATVPGQAAPQQIGQLTLANFINDAGLESLGGNL--YVETQASGAPNEATPGMDG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +   Y  T  VN+ EEL  +I+V+++Y I++K +  +D+MLQ L + 
Sbjct: 211 AGRLKHQYIETSNVNVAEELVTMIQVQRAYEINSKAVSASDQMLQRLAQL 260



 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/245 (7%), Positives = 51/245 (20%), Gaps = 37/245 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N  +  + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V  +  +       L             + F  ++           
Sbjct: 61  TLPTGMQLGTGVATVATQRMH---TQGSLTQTGRDYDMAIQGKGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +          +          + +   +   A+               +   A  +   
Sbjct: 112 TAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIG 171

Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           +++         L  L          + + ++A   +D    L  +  E   ++      
Sbjct: 172 QLTLANFINDAGLESLGGNLYVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELV 231

Query: 215 NDMVV 219
             + V
Sbjct: 232 TMIQV 236


>gi|88858141|ref|ZP_01132783.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Pseudoalteromonas tunicata D2]
 gi|88819758|gb|EAR29571.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Pseudoalteromonas tunicata D2]
          Length = 262

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 62/209 (29%), Gaps = 3/209 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++     ++    +            + +       F    + D
Sbjct: 50  NQPGGRSSQDTEMPSGLMLGAGTKVVATQKNFSQGNMITTDNSMDWMIQGQGFFEVLLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    T   + +  ++ +       ++         ++   ++       + N 
Sbjct: 110 GSLAYSRAGQFTTDGDGRVVTSGAGFPVQPEMNVPNDAQSLTISQDGEVSVRVRGQADNV 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N     E   S +             I +    T  VN 
Sbjct: 170 VIGQLTISDFINPSGLEPMGQNLFT--ETAVSGAPIQGNPGADGLGVIVQGALETSNVNT 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            EEL  LI+ ++ Y +++K+I   D+ML 
Sbjct: 228 TEELVNLIETQRIYEMNSKVISSVDQMLN 256



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/159 (5%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      + I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDT 60

Query: 56  RS-------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +     +     +        +    +        + S       + 
Sbjct: 61  EMPSGLMLGAGTKVVATQKNFSQGNMITTDNSMDWMIQGQGFFEVLLPDGSLAYSRAGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +            +  ++   +      +   EV 
Sbjct: 121 TTDGDGRVVTSGAGFPVQPEMNVPNDAQSLTISQDGEVS 159


>gi|302392939|ref|YP_003828759.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM
           5501]
 gi|302205016|gb|ADL13694.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM
           5501]
          Length = 262

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 2/184 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 ++     +       F      +      +  S     N +  ++  +      
Sbjct: 81  FAQGSFQQTGNPLDMAIEGDGFFQVVRPNGQVGYTRDGSFKRDSNGRIVTSDGYPLASDI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +V   A    ++    +          ++  +    L    RN     E   S
Sbjct: 141 TIPEDTTDVSITAEGRVMVKQPGNEEVTEVGQIELSRFSNPAGLKSIGRNLFA--ETPAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               + + ++  F  IS+ Y     V + EE++ +I  +++Y +++K I  +D+MLQ   
Sbjct: 199 GGPTVGVPAEDGFGTISQGYLEKGNVKVVEEMTNMIAAQRAYEVNSKAIKASDQMLQQAN 258

Query: 477 EGVK 480
              +
Sbjct: 259 NLKR 262



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 9/142 (6%), Positives = 22/142 (15%), Gaps = 27/142 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A            +I  N+ N +   + +                       +
Sbjct: 1   MIRSLWTAATGMKAQQLNIDTISNNLANVNTNGFKKSRVNFQDLMYQSLREAGTPNNQGS 60

Query: 45  ISPENVTVV-TQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V    R                 + +        F  +               
Sbjct: 61  QVPAGIEVGHGVRPAATQKLFAQGSFQQTGNPLDMAIEGDGFFQVV------RPNGQVGY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL 123
                 +              L
Sbjct: 115 TRDGSFKRDSNGRIVTSDGYPL 136


>gi|330899406|gb|EGH30825.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 262

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 248 ISTADQMLQNLTQ 260



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/243 (5%), Positives = 46/243 (18%), Gaps = 30/243 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+           +I  N+ N     +                         +
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L   ++ +      + F  + +             
Sbjct: 61  ELPSGLQLGTGVRIVGTQKKFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158
                            +   L   ++              T +  +    A       +
Sbjct: 115 SRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNI 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           + ++         +  +      +S            +     + +   +         +
Sbjct: 175 QTADFINPAGLQAMGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234

Query: 219 VYT 221
           + T
Sbjct: 235 ITT 237


>gi|311280015|ref|YP_003942246.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1]
 gi|308749210|gb|ADO48962.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1]
          Length = 260

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   +       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQILLPDGTSAYTRDGSFQVDQNGQLVTAGGYQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANTLSITIGRDGVVSVTQQGQTNPVQVGQLNLTTFMNDAGLESIGENLYT--ETQASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNDTTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVTTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 54/239 (22%), Gaps = 25/239 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQILLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD----KEIELEI 160
              +              +   +   A  +              +   +     ++ L  
Sbjct: 118 GSFQVDQNGQLVTAGGYQVQPAITIPANTLSITIGRDGVVSVTQQGQTNPVQVGQLNLTT 177

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                 L  +          + + +D    L+   +L Q   E   ++      N + V
Sbjct: 178 FMNDAGLESIGENLYTETQASGAPNDTTPGLNGAGLLYQGYVETSNVNVAEELVNMIQV 236


>gi|78221652|ref|YP_383399.1| flagellar basal body rod protein FlgG [Geobacter metallireducens
           GS-15]
 gi|78192907|gb|ABB30674.1| Flagellar basal-body rod FlgG [Geobacter metallireducens GS-15]
          Length = 262

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 51/183 (27%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +    +      +          I+  D       S     + Q R   S        
Sbjct: 80  IFTIGNINQTGNELDMAIEGDGFYQIQMPDGTTTYTRSGAFKRDSQGRVVTSDGYPLIPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G    ++              +     +      A     + E + S 
Sbjct: 140 IVIPNNATAINIGNDGTVSVSQAGQKSPTNVGNIQLAMFSNPSGLLAIGKNLFQESDSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       Q      ++ +     V++ EE+  +I  +++Y +++K +   D+MLQT   
Sbjct: 200 NATTGTPGQNGLGTTAQGFLEMSNVSVMEEMVNMITGQRAYEVNSKAVQTADEMLQTANS 259

Query: 478 GVK 480
             +
Sbjct: 260 LKR 262



 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/162 (4%), Positives = 30/162 (18%), Gaps = 27/162 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +           +  N+ N +   + +                        
Sbjct: 1   MIRALWTAASGMQAQQTNIDVVANNLANVNTAGFKKSRADFQDLMYQNMKTTGSPSTNTT 60

Query: 46  -SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +       +  K      ++   + +        F  ++           +  
Sbjct: 61  QVPSGIQIGLGAKLAAVTKIFTIGNINQTGNELDMAIEGDGFYQIQ------MPDGTTTY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                 +   +          L   ++        N      
Sbjct: 115 TRSGAFKRDSQGRVVTSDGYPLIPEIVIPNNATAINIGNDGT 156


>gi|188534168|ref|YP_001907965.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99]
 gi|188029210|emb|CAO97082.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99]
          Length = 260

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F +  + D      +  S     N Q  +N  F      V      ++    
Sbjct: 94  DVAINGQGFFSVQMPDGTTAYTRDGSFQTDQNGQLVTNAGFPVQPAIVIPPNSLSMTISR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         ++    +  L     N   + E   S + +         
Sbjct: 154 DGVVSVTQQGQANPVQVGQLTLSTFINDAGLSSMGENL--YQETQASGAPNESNPGNNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+ML  L + 
Sbjct: 212 GTLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQI 260



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/170 (7%), Positives = 36/170 (21%), Gaps = 21/170 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +   S       +     
Sbjct: 61  TLPSGLQIGTGTR---PVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              +          +   +   ++     +    +         +  A+ 
Sbjct: 118 GSFQTDQNGQLVTNAGFPVQPAIVIPPNSLSMTISRDGVVSVTQQGQANP 167


>gi|330892783|gb|EGH25444.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 280

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/246 (7%), Positives = 59/246 (23%), Gaps = 12/246 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF-- 63
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVCL 61

Query: 64  --DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     +   E+ +   T       ++ D         + +   ++    +    +   
Sbjct: 122 RLQGYAANEQGEIKRGLRT------DLQIDTSNVSARATTRVAENINLDASLPSLARLPV 175

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
               D   +       +Q      G + +   ++++  Y     T        +  +  N
Sbjct: 176 FDPADPATYTRAVGRTIQDAGSGAGATALPAADHELKQYFV--KTGDSQWSMYVLIDGRN 233

Query: 242 SYTVTS 247
                S
Sbjct: 234 PVDPNS 239


>gi|307627452|gb|ADN71756.1| flagellar basal body rod protein FlgG [Escherichia coli UM146]
          Length = 260

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSC 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|289679012|ref|ZP_06499902.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           syringae FF5]
          Length = 86

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                +L     +++  +    S S +    +  V +    S  +  GV+L EE S LIK
Sbjct: 1   GGGGTSLSGAYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIK 60

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGV 479
            +Q Y  S+++I     +  TL+  +
Sbjct: 61  YQQYYTASSQIIKAAQTIFSTLINSL 86


>gi|104782840|ref|YP_609338.1| flagellar basal body rod protein FlgG [Pseudomonas entomophila L48]
 gi|95111827|emb|CAK16551.1| Flagellar basal-body rod protein flgG [Pseudomonas entomophila L48]
          Length = 261

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 49/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       +      +       F      D      +  +  +  + Q  +   F  
Sbjct: 77  TQKNFQTGGLQNTENPLDMAINGRGFFQILQPDGTVSYTRDGTFHLNSDGQIVNADGFAL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +   V                 I    +   +       A       L     N   +LE
Sbjct: 137 EPAIVVPPEAQTFTVGQDGTVSITTAGNPAAQVIGNLQTADFINPAGLQAIGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +  +       F    +       V+  EEL  +I  +++Y +++K+I   DKML
Sbjct: 195 TAASGAPQIGTPGLNGFGTSLQKTLENSNVSTVEELVNMITTQRAYEMNSKVISAADKML 254



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 48/242 (19%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+   +        I  N+ N     + R                       +
Sbjct: 1   MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T         N     L    + +      + F  + +             
Sbjct: 61  ELPSGLQVGTGVRVVGTQKNFQTGGLQNTENPLDMAINGRGFFQILQ------PDGTVSY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   + +    N     L     V   A+      + +          A     L+
Sbjct: 115 TRDGTFHLNSDGQIVNADGFALEPAIVVPPEAQTFTVGQDGTVSITTAGNPAAQVIGNLQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            ++         + N+      AS                    +   +         ++
Sbjct: 175 TADFINPAGLQAIGNNLFLETAASGAPQIGTPGLNGFGTSLQKTLENSNVSTVEELVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 TT 236


>gi|332531620|ref|ZP_08407517.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624]
 gi|332038983|gb|EGI75412.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624]
          Length = 259

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 2/177 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
              +       +       F    + D   +  +  +  I       ++       G V 
Sbjct: 82  TQGNLVQGRPLDVAINGNGFFQVSMPDGTTQYTRDGALEISATGALVTSNGLPLADGIVI 141

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                ++               +  +      +A       L    +N     E   S +
Sbjct: 142 PPNASDLSIADDGTVTAKLPGQTVAQTIGNITLATFINPAGLEAKGQNLFA--ETAASGT 199

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            +    S      + + Y  +  VN+ +EL  +I+ +++Y +++K I  +D+MLQ L
Sbjct: 200 PNTGAPSANGIGKLMQGYLESSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQMLQKL 256



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 6/44 (13%), Positives = 14/44 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +      A+       +Q  +I  N+ N+    + R   +    
Sbjct: 1  MFNSLWIAKTGMEAQQRQLDTISNNLANSSTNGFKRSSVVFEDL 44


>gi|242310749|ref|ZP_04809904.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489]
 gi|239523147|gb|EEQ63013.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489]
          Length = 764

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/354 (9%), Positives = 94/354 (26%), Gaps = 17/354 (4%)

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
           +  SA E+  +      E+  +              N           + +       + 
Sbjct: 416 YQRSAEEITMVEDPETGELVPQNPAEDTQAWIEVGENTKGMIAEYQAGNNYQENAMVTLN 475

Query: 198 LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGV 257
                ++ G      + +          +L  T      +E  N+   +       +   
Sbjct: 476 GILYQKVNGAGNTNPSEDSSGWRILMSDSLDSTQLNVPTYET-NTEVYSDTGEKFILKNQ 534

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
            +   QG       I    ++R ++       +     VL       D  A  +      
Sbjct: 535 YILIEQGDQTATPPINERWEVRSAIYDSTGKTMISQNPVLSEISFNADGSANATPFAVEF 594

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                  +L        S          ++ +        ++  + +   +     ++ +
Sbjct: 595 QGGSIQVNLAQSDDGKSSSNFAY-----TDSALKSATQDGTESGIMDDIVINEDGIILVN 649

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM-----------KSQ 426
           + +   +      +A    +  L +   N         +    +              + 
Sbjct: 650 FTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFEMNAMTINGETSVVSGPPLLAWEETGTAS 709

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +  + +    T  V+    L+ LI  ++ Y +S K I   D+++Q  ++  +
Sbjct: 710 LKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLMQEAIQLKR 763



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/278 (9%), Positives = 64/278 (23%), Gaps = 29/278 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           ++       +              NI N +   +                          
Sbjct: 1   MVGSLYSGISGIKTHQVGIDVTSNNIANINTTGFRANTPEFKSLFSTNLNYVNSNSPVAN 60

Query: 49  ----NVTVVTQRSENKNMF----DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                VT+ +      +      D   +   S  G   +  +     ++ + + +   + 
Sbjct: 61  DYNYGVTLGSNAINTNDGTYVSADGDFNVAYSGKGWFVVGLNKNGEFDINNPNYNVKQNY 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                      E Y  N S        I+  +       T    +Q+  A+    +   I
Sbjct: 121 FTRDGSFSLDGEGYLVNSSG--YYMYGINLGKIAADGTLTGTNNLQQDYANLGGSVLEPI 178

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
              +    + T+  +       ++      +     +    S            +   + 
Sbjct: 179 QIPKELHYQPTLTTEVNLAVNLNRTQNAKGITALQDINGNFSMEK-----FLAQDINSLM 233

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
            S G  L     +DI F    +   T+ +      G  
Sbjct: 234 DSSGKLLDAKNYKDITFSIEQNGVTTNHTFTYGDTGAN 271


>gi|167945787|ref|ZP_02532861.1| hypothetical protein Epers_04305 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 168

 Score = 70.1 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 57/154 (37%), Gaps = 4/154 (2%)

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V +     +  +   K +    S +G+     S     + + AD       +  ++
Sbjct: 16  LGTGVELHGINRQYDDFTAKRVRDGRSTVGELDAFYSNAQRLDSILADPA--VGLSPALN 73

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
              ++++  + + +     + ++  +  +V+  +   ++    +A  ++ ++  +  + R
Sbjct: 74  DFFNAMQELADDPASIPSRQLLLAESRSLVERMHDLDQQFADSQAQVNRRLDDVVQEIDR 133

Query: 166 FLSELTVVNDAIKFKTASK--HDAHDFLDQRDVL 197
               +   NDA+            +D LDQRD L
Sbjct: 134 LAESIANANDAVVSALGHGSHQTPNDLLDQRDEL 167


>gi|163783988|ref|ZP_02178953.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880748|gb|EDP74287.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1]
          Length = 327

 Score = 70.1 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/337 (10%), Positives = 78/337 (23%), Gaps = 13/337 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++  F       N   +  + I  NI N +   +                 +  S   N 
Sbjct: 1   MIQSFYTGNAGLNANQKWLSVISDNIANVNTIGFKAERANFEDL----IASSITSFANNA 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +     S IG               S     N +    ++   +             
Sbjct: 57  PKNMEIGGGSFIGSTTK---------DFSQGALKNTNIATDLALDGEGFFMVQDKQGVTY 107

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +      N +   +Q    DA+  I   I  +    +    V   +  K+ 
Sbjct: 108 YTRAGQFRTDANGDLINLNGMYLQGWSLDANGNISGSIGKINIPNAMDPHVTSKLALKSP 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +A   L  + +     +    ++ I   ++  V + +    + E   +   F  ++ 
Sbjct: 168 TNLNASSPLITKTLDTSDATTYNYVNAITVYDSLGVSHQAQLYFVHENSNQWRVFGLLDD 227

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
             +             +            IK      +          D     L  +  
Sbjct: 228 EPIQFNVPGDTNTYDSLLVEFNGVGQINSIKGYGINTNQTETNVLENSDLGKYTLANTPV 287

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
               +      V G        D  +     ++    
Sbjct: 288 LPGSLVITQYTVGGTPTTVNWIDDGHGNIIDLNNNNK 324


>gi|304397206|ref|ZP_07379085.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB]
 gi|308186395|ref|YP_003930526.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1]
 gi|304355355|gb|EFM19723.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB]
 gi|308056905|gb|ADO09077.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1]
          Length = 260

 Score = 70.1 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       +    + D  +   +  +  +  N Q  +N  F    G  
Sbjct: 82  TQGNLSQTSNSKDIAINGQGYFQIQMPDGTSAYTRDGAFQVDQNGQLVTNSGFPVQPGIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         ++    +  L     N   + E   S 
Sbjct: 142 IPANATSITVSRDGVVSVTQQGQAQAAQVGQLTLSTFMNDAGLDSVGENL--YKETQASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       Q     + + Y+ T  VN+ EEL  +I+ +++Y I++K I  +D+ML  L +
Sbjct: 200 APTDSTPGQNGAGLLYQGYTETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLAKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 29/149 (19%), Gaps = 21/149 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R   +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVTTERLHTQGNLSQTSNSKDIAINGQGYFQIQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              +          S   +   +   A  
Sbjct: 118 GAFQVDQNGQLVTNSGFPVQPGITIPANA 146


>gi|124516715|gb|EAY58223.1| Flagellar basal body rod protein FlgG [Leptospirillum rubarum]
          Length = 261

 Score = 70.1 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 9/144 (6%), Positives = 22/144 (15%), Gaps = 28/144 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A +           I  N+ N +   + R+                       
Sbjct: 1   MFRSLWNAASGMEAQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLG 60

Query: 46  --SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
             SP  + V                     ++ +        F  +            + 
Sbjct: 61  NQSPTGMQVGLGVRSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQI------SLPDGRTA 114

Query: 101 THYISKLRDSLESYSKNLSEDILG 124
                      +            
Sbjct: 115 YTRDGTFSIDGQGRLVTQDGLPTN 138



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           ++       L     N   ++E   S    L          +   +     VN+ EEL  
Sbjct: 176 LSQFVNPAGLESRGNNL--FMETAASGQPQLSNPGTNGTGRLQSGFLEASNVNVAEELVN 233

Query: 451 LIKVEQSYNISNKLIMFTDKML 472
           ++  +++Y +    I   ++ML
Sbjct: 234 MVIGQRAYQMDATGIRTVNRML 255


>gi|56551507|ref|YP_162346.1| hypothetical protein ZMO0611 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543081|gb|AAV89235.1| protein of unknown function DUF1078 domain protein [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 411

 Score = 69.7 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/474 (8%), Positives = 104/474 (21%), Gaps = 67/474 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            F  +    N A    +    NI N+ +  + +                           
Sbjct: 2   AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKK--------------------------- 34

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                            F  L          N      +        S S   +   L  
Sbjct: 35  -------------TTTDFGELVADSPLASGQNIGQGTRLRATIQDFTSGSMKTTNRALDM 81

Query: 126 TVIDNAEEVVQNFNTSAR-EVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
            V  +   +V++   S    + +  +    +    +++   +L      N    +     
Sbjct: 82  MVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVTSDGHYLQVYATTNSGNIYNNGET 141

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             A      +++ L    + + I                  T       +      +   
Sbjct: 142 GSATGGRVVKNLTLPSYEDQVSI---------------SSATGETVQVGNNLARTGDVTV 186

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
             +  + +  +  +                +L I    +    N +   A       +  
Sbjct: 187 TGTNGDTVIHNAKITLGGATINSDGSTTGGVLTITGGTIGAGVNSVANTATYTSTKAAAT 246

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
              +     + G+     +    +                  +        ++S      
Sbjct: 247 ITTSAGVSTLTGVTDLGTLSYNGDTYTGSPITAFNPQTSTDESGDTSSALSNISVGTDGK 306

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
           V       +       +       + +                  W     S S +    
Sbjct: 307 VTATFANGNQYILGAVALGDVNNRNGLHSTGNA-----------NWTVTGTSGSLNYREA 355

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  +         ++L +EL  LI  ++++  ++K I   ++M+  ++  
Sbjct: 356 DTSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAISTDNQMVSYVMNI 409


>gi|110632656|ref|YP_672864.1| flagellar basal body rod protein FlgG [Mesorhizobium sp. BNC1]
 gi|110283640|gb|ABG61699.1| flagellar basal-body rod protein FlgG [Chelativorans sp. BNC1]
          Length = 262

 Score = 69.7 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 40/181 (22%), Gaps = 28/181 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51
             + A    +        I  NI N +   + R     +     V               
Sbjct: 3   ALSIAATGMSAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQVERLQGVPERANQNIV 62

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   +         L    + +    + + +  ++                
Sbjct: 63  PEGANIGLGVKTAAVRNVHVQGSLTNTGNKLDMALVGKGWFQIE------GADGEPLYSR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 +       +    +   +   A+ V    N S +   +I   AD +   +++  
Sbjct: 117 AGAFNTNATGQLVTVDGFPVTPAITIPADAVEVIVNKSGQVFARIDGQADLQELGQLTLA 176

Query: 164 R 164
            
Sbjct: 177 N 177



 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +      +A  +    L     N   + E   S    + +     F  + + Y   
Sbjct: 164 QADLQELGQLTLANFSNEAGLAPIGNNL--FRETPASGPATIGVPGDPGFATVEQGYLEA 221

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V+  +E++ LI  +++Y +++K+I   D+M  T+ + ++
Sbjct: 222 SNVDPVKEITELISAQRAYEMNSKVITAADEMAATVTQAMR 262


>gi|259908810|ref|YP_002649166.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96]
 gi|224964432|emb|CAX55941.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96]
 gi|283478792|emb|CAY74708.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM
           12163]
 gi|310767292|gb|ADP12242.1| Flagellar basal-body rod protein [Erwinia sp. Ejp617]
          Length = 260

 Score = 69.7 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F +  + D      +  S     N Q  ++  F      V      ++    
Sbjct: 94  DVAINGQGFFSVQLPDGTAAYTRDGSFQTDQNGQLVTSAGFPVQPAIVIPANSLSMTISR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         ++    +  L     N   + E   S + +         
Sbjct: 154 DGVVSVTQQGQANPVQVGQLTLSTFMNDAGLSSMGENL--YQETQASGAPNESNPGNNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+ML  L + 
Sbjct: 212 GTLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQI 260



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 21/170 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDGQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +   S       +     
Sbjct: 61  TLPSGLQIGTGTR---PVATERLHNQGNLSQTDSSKDVAINGQGFFSVQLPDGTAAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              +          +   +   ++  A  +    +         +  A+ 
Sbjct: 118 GSFQTDQNGQLVTSAGFPVQPAIVIPANSLSMTISRDGVVSVTQQGQANP 167


>gi|42526518|ref|NP_971616.1| flagellar basal body rod protein FlgG [Treponema denticola ATCC
           35405]
 gi|41816711|gb|AAS11497.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC
           35405]
 gi|325473456|gb|EGC76651.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402]
          Length = 264

 Score = 69.7 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 62/256 (24%), Gaps = 6/256 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +  N + + +      ++                V      A       V     +
Sbjct: 11  GMNTQQANIDTVANNLANVNTSGFKKQRAEFEDLIYQTVKTAGTPATEDTITPVGVQMGH 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY---R 345
                A   I            S+          +   D         +  ++       
Sbjct: 71  GARLAATQRIFEQGSLQNTGVTSDIAIQGEGFFRVLQYDGTYAYTRDGSFKIDADRQLVT 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYA 404
           SN   +       + +  N   ++    +     D  +        +     N  L    
Sbjct: 131 SNGLRVLPEIIFPEGYRENTIAVSRDGRVTVKVGDIDDPIEVGQIELYRFQNNAGLSAEG 190

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   + +   S +          F      +     V+   E+  +I  +++Y  ++K 
Sbjct: 191 SNL--FRQTPASGTAIPGRPGFTGFGRTEHKFLEMSNVSTVSEMVNMIVAQRAYEFNSKA 248

Query: 465 IMFTDKMLQTLLEGVK 480
           I  +D ML T +   +
Sbjct: 249 IQTSDNMLGTAVSLKR 264



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 34/171 (19%), Gaps = 16/171 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++     A    N       ++  N+ N +   + ++                       
Sbjct: 1   MVRSLWTAATGMNTQQANIDTVANNLANVNTSGFKKQRAEFEDLIYQTVKTAGTPATEDT 60

Query: 52  ---VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107
              V  Q      +          ++    +        E       +            
Sbjct: 61  ITPVGVQMGHGARLAATQRIFEQGSLQNTGVTSDIAIQGEGFFRVLQYDGTYAYTRDGSF 120

Query: 108 RDSLESYSKNLSED-ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +   +      +   +L + +            +    V     D D  IE
Sbjct: 121 KIDADRQLVTSNGLRVLPEIIFPEGYRENTIAVSRDGRVTVKVGDIDDPIE 171


>gi|223040682|ref|ZP_03610951.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267]
 gi|222878046|gb|EEF13158.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 58/216 (26%), Gaps = 2/216 (0%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                    A  +    +      +   + ++    + ++     +       F    + 
Sbjct: 49  MEYAGTATSATTKSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLP 108

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D      +  +  +       ++  ++             +         +    ++   
Sbjct: 109 DGTTAYTRNGAFKLNSEGTVVNSDGYVLQPQMTIPADATQISVGTDGTVSVLQPGNTEMA 168

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L     N   +L    S    +          I + +     V L
Sbjct: 169 QVGRIELANFINPAGLHSMGDNL--YLPTGSSGEVVVGTAGLDGLGTIRQGFVEMSNVQL 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE++ LI  +++Y  ++K I  +D ML  +    +
Sbjct: 227 VEEMTDLITGQRAYEANSKAITTSDDMLSIVNSLKR 262



 Score = 63.1 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 36/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         Q      NI N +   Y +                        
Sbjct: 1   MMRSIYSAATGMIAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K          S+ +        F  ++           +  
Sbjct: 61  KSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + + E    N    +L   +   A+    +  T          + +      I 
Sbjct: 115 TRNGAFKLNSEGTVVNSDGYVLQPQMTIPADATQISVGTDGTVSVLQPGNTEMAQVGRIE 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|296134367|ref|YP_003641614.1| fagellar hook-basal body protein [Thermincola sp. JR]
 gi|296032945|gb|ADG83713.1| fagellar hook-basal body protein [Thermincola potens JR]
          Length = 362

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/237 (7%), Positives = 46/237 (19%), Gaps = 34/237 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +          SI  N+ N +   Y +                        
Sbjct: 1   MLQALWSASSGMLGQQLAMDSIANNLANVNTTGYKKSRVEFQDLLYSEMRAPGKKTLRGE 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  +   V               ++    + +       +F A+           +
Sbjct: 61  IIPTGFQTGNGVRPAGTPVI---FGQGIIQQTDNPLDLAIEGNAFFAV------RRPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    +   +          +    ++                  +   A   I  
Sbjct: 112 LAYTRDGSFKLDAKGTLVTADGSKVLDENLNPLTFDSPQSLKIDNAGAILEQQAVGRIPG 171

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ-RDVLLQKISEIIGISTIVRNN 214
            +      L ++         ++     A     + RD+  Q +     ++      
Sbjct: 172 FVFEAADKLEKVEDGYFRPTRESGKALPAEQNNKEGRDLYFQVLLPDGKVAYTKETQ 228



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L +   N     E   S +  +   +      +  S      V + EE+  +I 
Sbjct: 280 FVNPAGLNKIGSNMYA--ESVNSGAATVAGPADY---TLRSSALEGSNVEVAEEMVNMII 334

Query: 454 VEQSYNISNKLIMFTDKML 472
             ++Y +S++ I  +D+ML
Sbjct: 335 ANRAYELSSRSIRTSDEML 353


>gi|332704823|ref|ZP_08424911.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554972|gb|EGJ52016.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                +     +     N  L    RN   ++E   S         +     +++ +   
Sbjct: 162 QGNELSSTDLQLYTFQNNAGLNAIGRNL--FIETEASGPATAGTPGEENVGTLAQGFLEG 219

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V L +E+  +I  ++++ +++K I  +D MLQT +   +
Sbjct: 220 SNVELVDEMVGMIIGQRAFEVNSKAISTSDTMLQTAINVKR 260



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 28/143 (19%), Gaps = 28/143 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49
           ++     A            +I  N+ N +   + +                       N
Sbjct: 1   MMRSLWTAATGMVAQQMNIDTISNNLANVNTIGFKKSRAEFEDLMYQTMKIAGTRTEGGN 60

Query: 50  VTVVTQRS--------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           VT V  +          +K          S+ +             +     D       
Sbjct: 61  VTPVGIQMGMGVRPMTVHKFFTQGDFQNTSNPLDIAIEG-------DGFFLVDFNGTEAF 113

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 +   E      +  +L 
Sbjct: 114 TRAGAFKLDNEGRMVTANGYLLQ 136


>gi|308050022|ref|YP_003913588.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM
           9799]
 gi|307632212|gb|ADN76514.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM
           9799]
          Length = 261

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 52/186 (27%), Gaps = 2/186 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +    +V             +   +   F      + D    +        +    ++  
Sbjct: 74  ITGTQKVFTTGDIITTNQPLDLAIMGQGFFQVEQPNGDFAYTRDGQFYRNADGLVVTSEG 133

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                     +    V   +          D+  +      +A       L  +  N   
Sbjct: 134 MPLVPAVEIPEDALTVTVGSDGIVTAQIAGDAVPQELGQITLANFTNPAGLEAFGNNL-- 191

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E   S      +        + +       VN+ EE+  +I  +++Y ++ K++  TD
Sbjct: 192 YRETAASGVAIEGIPGDAAIGQLKQGTLEGANVNVVEEMVEMISTQRAYEMNAKVVSSTD 251

Query: 470 KMLQTL 475
            ML+ L
Sbjct: 252 DMLKYL 257



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 56/245 (22%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R                        
Sbjct: 1   MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVSFNDLFYQTQRQPGAMADQQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +   +          +   +  +    + Q F  +++         +
Sbjct: 61  ELPSGLQLGTGVRITGTQKV---FTTGDIITTNQPLDLAIMGQGFFQVEQ------PNGD 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                  +   + +          L   V    + +     +      +I  DA  +   
Sbjct: 112 FAYTRDGQFYRNADGLVVTSEGMPLVPAVEIPEDALTVTVGSDGIVTAQIAGDAVPQELG 171

Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           +I+              N+  +   AS            +   K   + G +  V     
Sbjct: 172 QITLANFTNPAGLEAFGNNLYRETAASGVAIEGIPGDAAIGQLKQGTLEGANVNVVEEMV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 EMIST 236


>gi|262364765|gb|ACY61322.1| flagellar hook protein [Yersinia pestis D182038]
          Length = 104

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           +N   W E N+S +  L      +   +         V++  EL  L+  +++Y  S K+
Sbjct: 30  QNGTSWSESNKSGAALLGTPGTGLLGSLESGALENSNVDITAELVGLMTAQRNYQASTKI 89

Query: 465 IMFTDKMLQTLLE 477
           I   D M+  L +
Sbjct: 90  ISTNDSMMNALFQ 102


>gi|77359724|ref|YP_339299.1| flagellar basal body rod protein FlgG [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874635|emb|CAI85856.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 63/208 (30%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++     ++    +            + +       F      D
Sbjct: 50  NQPGGRSSQDTEMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGSGFFEVLQPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNK 384
            +    +    T   + +  ++ +       ++         ++   ++       + N 
Sbjct: 110 GNIAYSRNGQFTTDGDGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVSVRVAGQADNV 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N     E   S +             I +    T  VN+
Sbjct: 170 VIGQITISDFINPSGLEPIGQNLYT--ETAVSGAPVQGNPGVDGLGTIIQGSLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+M+
Sbjct: 228 TEELVNLIETQRVYEMNSKVISAVDEMM 255



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/165 (6%), Positives = 35/165 (21%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +      ++   +      + I  N+ NA    Y +   +                    
Sbjct: 1   MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDT 60

Query: 50  --------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  KN     +    +++        F  + +         N   
Sbjct: 61  EMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGSGFFEVLQ------PDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +     +          + +  ++  ++      +   EV 
Sbjct: 115 SRNGQFTTDGDGRVVTSGAGYVVQPEMNVPDDAQSITVSQDGEVS 159


>gi|294140187|ref|YP_003556165.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12]
 gi|293326656|dbj|BAJ01387.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    +V           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  ++ S      +++         ++   ++         
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQMVTSGSGYVVQPAITIPDNATSITVSAEGEVSVKTPGTIE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      ++       L    +N   +LE   S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      + I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   +       ++  EV 
Sbjct: 121 TLDDTGQMVTSGSGYVVQPAITIPDNATSITVSAEGEVS 159


>gi|302878278|ref|YP_003846842.1| flagellar basal-body rod protein FlgG [Gallionella
           capsiferriformans ES-2]
 gi|302581067|gb|ADL55078.1| flagellar basal-body rod protein FlgG [Gallionella
           capsiferriformans ES-2]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 56/181 (30%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +           +          +   D         +   + Q +   +        
Sbjct: 80  IHTQGNLQQTGNQLDVAINGSGFFQVLMPDGSTGYTRDGSFQRDAQGQMVTASGFPVQPA 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +    G   +++              +            A+    + E   S 
Sbjct: 140 ISLPANAITVTIGRDGVVSVTQPGVAAPVQVGSMQVTTFINPAGLMAQGENLYQETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   ++        +S++Y  T  VN+ EE+  +I+ +++Y I++K I  +D+MLQ L +
Sbjct: 200 TPSTNVPGTNGSGLLSQNYVETSNVNVVEEMVNMIQTQRAYEINSKSITTSDQMLQKLSQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/262 (6%), Positives = 55/262 (20%), Gaps = 34/262 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     ++   +    Q  +I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQMDTIANNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSSQQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L    + +        F  +           +
Sbjct: 61  QIPSGLQIGTGVRPVAAERIH---TQGNLQQTGNQLDVAINGSGFFQVL------MPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +   +      S   +   +   A  +          V   +      +++
Sbjct: 112 TGYTRDGSFQRDAQGQMVTASGFPVQPAISLPANAITVTIGR-DGVVSVTQPGVAAPVQV 170

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               +  F++   ++         +        +        +     + T   N  + +
Sbjct: 171 GSMQVTTFINPAGLMAQGENLYQETASSGTPSTNVPGTNGSGLLSQNYVETSNVNVVEEM 230

Query: 219 VYTSDGTTLFETVPRDINFEKM 240
           V        +E   + I     
Sbjct: 231 VNMIQTQRAYEINSKSITTSDQ 252


>gi|163803171|ref|ZP_02197054.1| putative flagellar basal-body rod protein [Vibrio sp. AND4]
 gi|159173071|gb|EDP57904.1| putative flagellar basal-body rod protein [Vibrio sp. AND4]
          Length = 261

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     I       ++     
Sbjct: 77  TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDDAISFSVGVDGTVTTTSADDPNPQQLGQISLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S S D  +  +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TAASGSADELIAGEDGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/180 (7%), Positives = 40/180 (22%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   +  +    + Q F  ++              
Sbjct: 61  ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   + E    N     L   +    + +  +             D + +   +IS
Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDDAISFSVGVDGTVTTTSADDPNPQQLGQIS 174


>gi|330955627|gb|EGH55887.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7]
          Length = 208

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 2/160 (1%)

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                          I   +    Q  S    L+   +       +  N+    +L   Y
Sbjct: 50  TTATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATY 109

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +  ++      +        L +       W E   S              +I+     
Sbjct: 110 TNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVPVSGAPQSGTLGYITGQALE 167

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 168 ESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 207


>gi|114566479|ref|YP_753633.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337414|gb|ABI68262.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 261

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 2/151 (1%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
             +  +  I  N Q  +    L +G     +  ++++  +              +     
Sbjct: 113 YTRDGAFKIDANGQLVTADGNLLEGAGTFDEGAYDIQIASDGKISYMIPGQETPEEAGQL 172

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +        L +  +N   +     S   +           +   Y     V + EE+ 
Sbjct: 173 KLFKFINPAGLQKIGKNL--YRATPNSGEAEEWQPDSDNSVSLEAGYLEMSNVQIVEEMV 230

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  +++Y I++K+I+ +D+MLQT     +
Sbjct: 231 NLITAQRAYEINSKVIISSDEMLQTAANLRR 261



 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/154 (5%), Positives = 29/154 (18%), Gaps = 30/154 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          ++  N+ N +   + ++                       
Sbjct: 1   MMRSLYTASSGMYAQQLNIDTLSHNMANVNTVGFKKQRLEFQDLLYQTIRRPAADEDRNE 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V      +         L A  + +       +F  +K         +   
Sbjct: 61  PVGLLVGLGVKPAAINTI---FNTGNLQATENPLDVAINGTAFFGVK-----VAGNDELL 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                  +            ++L      +    
Sbjct: 113 YTRDGAFKIDANGQLVTADGNLLEGAGTFDEGAY 146


>gi|2275161|gb|AAB81413.1| FlgG [Sinorhizobium meliloti]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A    N        I  NI N +   Y R     +                     
Sbjct: 3   ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    +      + + +  ++           + 
Sbjct: 63  PEGAIIGLGVQTSAVR---NLHIQGSLVNTGNDYDLALVGRGWFQIE------TPDGETV 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +       +    +   V    +     F +S + + +I  D + +   ++
Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TIAN 177



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 2/163 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +   V   +      D +    +  +       Q  +   +    G    +    +   
Sbjct: 93  YDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFT 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           +    ++    D+  +      +A       L     N   + +   S    +   +   
Sbjct: 153 SSGQVMVRIGNDTELQEIGQLTIANFVNEAGLEPMGENL--FRQTPASGDPIVGTPADPG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           F  I ++Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 211 FAQIKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEM 253


>gi|330899411|gb|EGH30830.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 97

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%)

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 +L     +++  +    S S +    +  V +    S  +  GV+L EE S LI
Sbjct: 11  NGGVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLI 70

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
           K +Q Y  S+++I     +  TL+  +
Sbjct: 71  KYQQYYTASSQIIKAAQTIFSTLINSL 97


>gi|90422610|ref|YP_530980.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           BisB18]
 gi|90104624|gb|ABD86661.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 34/184 (18%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        I  NI N +  +Y R     T                     
Sbjct: 3   ALAIAATGMSAQQLNVEVIANNIANINTTSYKRARAEFTDLFYQIDRMQGVPNRVGEGAV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L    +        + +  +            + 
Sbjct: 63  PEGAKLGLGVRSAAVRKLH---LQGALTQTGNPYDLAVNGRGWFQVV------GPNGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +          +   ++     V    N S +   K+  +        +
Sbjct: 114 YTRAGAFNTNADGQLVTADGYNVDPAILIPQGTVEVTVNESGQVFAKLDGEITPRELGRL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TLAN 177



 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 2/173 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +     +       +      + +    +  +     + Q  +   +  D   +  +  
Sbjct: 87  TQTGNPYDLAVNGRGWFQVVGPNGETLYTRAGAFNTNADGQLVTADGYNVDPAILIPQGT 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             V              +   +      +A       L     N   + E   S    + 
Sbjct: 147 VEVTVNESGQVFAKLDGEITPRELGRLTLANFANEAGLDPLGSNL--YKETLSSGVPVVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +     F  I   Y  +  V+  +E++ LI  ++SY +++K+I   D+M QT+
Sbjct: 205 VPGDPGFGKIYHHYLESSNVDPVKEITELISAQRSYEMNSKVITAADEMAQTV 257


>gi|260597447|ref|YP_003210018.1| flagellar basal body rod protein FlgG [Cronobacter turicensis
           z3032]
 gi|260216624|emb|CBA29921.1| Flagellar basal-body rod protein flgG [Cronobacter turicensis
           z3032]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITVGRDGVVSVTQQGTAAPVQVGQINLTTFMNDSGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|261339378|ref|ZP_05967236.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318179|gb|EFC57117.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus
           ATCC 35316]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQIQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQIQLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|156934438|ref|YP_001438354.1| flagellar basal body rod protein FlgG [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532692|gb|ABU77518.1| hypothetical protein ESA_02269 [Cronobacter sakazakii ATCC BAA-894]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  TQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITVGRDGVVSVTQQGTAAPVQVGQINLTTFMNDSGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 31/150 (20%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHTQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|15964415|ref|NP_384768.1| flagellar basal body rod protein FlgG [Sinorhizobium meliloti 1021]
 gi|307311557|ref|ZP_07591198.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti
           BL225C]
 gi|307318912|ref|ZP_07598343.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83]
 gi|17380480|sp|Q52946|FLGG_RHIME RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|15073592|emb|CAC45234.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021]
 gi|306895326|gb|EFN26081.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83]
 gi|306899574|gb|EFN30203.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti
           BL225C]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A    N        I  NI N +   Y R     +                     
Sbjct: 3   ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    +      + + +  ++           + 
Sbjct: 63  PEGAIIGLGVQTSAVR---NLHIQGSLVNTGNDYDLALVGRGWFQIE------TPDGETV 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +       +    +   V    +     F +S + + +I  D + +   ++
Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TIAN 177



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 2/163 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +   V   +      D +    +  +       Q  +   +    G    +    +   
Sbjct: 93  YDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFT 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           +    ++    D+  +      +A       L     N   + +   S    +   +   
Sbjct: 153 SSGQVMVRIGNDTELQEIGQLTIANFVNEAGLEPMGENL--FRQTPASGDPIVGTPADPG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           F  + ++Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 211 FAQVKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEM 253


>gi|328543156|ref|YP_004303265.1| flagellar basal-body rod FlgG [polymorphum gilvum SL003B-26A1]
 gi|326412902|gb|ADZ69965.1| Flagellar basal-body rod FlgG [Polymorphum gilvum SL003B-26A1]
          Length = 259

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +    +    + +          I+  D         +   +                
Sbjct: 80  IMTQGTIEQTGKDMDVAIRGEGFFQIQLPDGTTAYTRDGSFERDANGTLVTIDGYTLDPG 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                            +        + F    +A       L     N   +LE   S 
Sbjct: 140 IVIPNDARDLTISANGTVQAVVGVATQQFGQIQLARFVNKSGLEAIGDNL--YLETEASG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              + +  +  +  + +SY     V+   E+S LI  +++Y +++++I   D+M  T   
Sbjct: 198 QPQVGIPGEEGYGDLQQSYLEMSNVDAVSEISDLIAAQRAYEMNSRIIQAADEMYSTTTN 257

Query: 478 G 478
            
Sbjct: 258 I 258



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/221 (6%), Positives = 40/221 (18%), Gaps = 16/221 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SPENV 50
             + A             I  N+ N     Y R+                     +   V
Sbjct: 3   ALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYQNLRRMGTDSSNAGTIV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q                  I Q           E           +          
Sbjct: 63  PTGVQIGSGVKTAATARIMTQGTIEQTGKDMDVAIRGEGFFQIQLPDGTTAYTRDGSFER 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
                   +    L   ++   +      + +      +     +  +++++        
Sbjct: 123 DANGTLVTIDGYTLDPGIVIPNDARDLTISANGTVQAVVGVATQQFGQIQLARFVNKSGL 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
             + ++      AS         +      + S +   +  
Sbjct: 183 EAIGDNLYLETEASGQPQVGIPGEEGYGDLQQSYLEMSNVD 223


>gi|195940720|ref|ZP_03086102.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7
           str. EC4024]
 gi|295096223|emb|CBK85313.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/209 (7%), Positives = 46/209 (22%), Gaps = 24/209 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +              +   +   A  +              +  A     +++  L 
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQA---APVQVGQLN 174

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     ++I     ++  +    ++
Sbjct: 175 LTTFMNDTGLESIGENLYTETQSSGTPNE 203


>gi|313903628|ref|ZP_07837018.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466181|gb|EFR61705.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 275

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 53/212 (25%), Gaps = 6/212 (2%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
             ++ A  ++             ++A    G     DP       +              
Sbjct: 69  GVRLAATPRLWSQGPLQATGSPWDLAIEGAGFLQVADP-GTGEVLLTRGGTFAASPVPAG 127

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
               G +    +       P     G  +          ++   ++              
Sbjct: 128 VPGGGEAGEALLVTDGAGRPLLAAGGQPLLLPAGSRGWVVSPDGEVRALLAGGREVPAGR 187

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             V        L                         Q     I +       V+L  E+
Sbjct: 188 LAVMVPPAPDALESRGEGLYALGGNPV----PAGAPGQDGAGWIRQGMLEQSNVDLALEM 243

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + L+  +++Y ++ + ++  D+ML +L+  ++
Sbjct: 244 TRLLASQRAYQLNARAVLTGDEML-SLINRLR 274



 Score = 43.5 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 9/113 (7%), Positives = 15/113 (13%), Gaps = 29/113 (25%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTI---------------------SPENVTVVTQRS 57
           +Q      N+ N     +                                  V +     
Sbjct: 18  RQVDLTAGNLANVSTPGFKAARADFADLVYAAAQVPVAPPAAAAGGVQVGHGVRLAATPR 77

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                    L A  S          F  + +                     S
Sbjct: 78  LWSQ---GPLQATGSPWDLAIEGAGFLQVAD-----PGTGEVLLTRGGTFAAS 122


>gi|212634350|ref|YP_002310875.1| flagellar basal body rod protein FlgG [Shewanella piezotolerans
           WP3]
 gi|212555834|gb|ACJ28288.1| Flagellar basal-body rod protein FlgG [Shewanella piezotolerans
           WP3]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
               G   +  ++ + +      Q+    +V           + +       F    + D
Sbjct: 50  NQAGGVSASNTKLPNGLNIGAGTQVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEVQMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    ++    Q  +  S      +++         ++   ++      ++ N+
Sbjct: 110 GTAAYTRTGQFSLDDTGQIVTPGSGYVVQPAITIPDDATSITVSAEGEVSVKTPGNAENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +      S      I +    T  VN+
Sbjct: 170 VVGQLAMSDFINPAGLDPMGQNL--YMETGASGTPIQGTASLDGMGAIRQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/159 (5%), Positives = 34/159 (21%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53
           +      ++   +      + I  N+ NA    + +   +              V+    
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGVSASNT 60

Query: 54  ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTQVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEVQMPDGTAAYTRTGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   ++      ++  EV 
Sbjct: 121 SLDDTGQIVTPGSGYVVQPAITIPDDATSITVSAEGEVS 159


>gi|127512281|ref|YP_001093478.1| flagellar basal body rod protein FlgG [Shewanella loihica PV-4]
 gi|126637576|gb|ABO23219.1| flagellar basal-body rod protein FlgG [Shewanella loihica PV-4]
          Length = 262

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 67/210 (31%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVSVKTPGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      ++       L    +N   +LE   S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      + I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   ++      ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVS 159


>gi|237817504|ref|ZP_04596494.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A]
 gi|237787259|gb|EEP61477.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A]
          Length = 106

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57
          MSL  +     +  N  + + +++  NI NA    Y R +T  +      T     S
Sbjct: 1  MSLYGMMRTGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNS 57


>gi|296102906|ref|YP_003613052.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057365|gb|ADF62103.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 260

 Score = 69.7 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 TPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|90408062|ref|ZP_01216233.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3]
 gi|90310819|gb|EAS38933.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      V        L     N         S +    +        + +    T  V
Sbjct: 168 NQVVGQINVNDFVNPSGLEPMGENLYTETG--ASGAPIQGVPGGDGLGFLRQGMLETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRVYEMNSKVISAVDEML 255



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/199 (8%), Positives = 46/199 (23%), Gaps = 15/199 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      ++   +      A+I  N+ NA    + +   +                    
Sbjct: 1   MHPALWISKTGLDAQQTNVATISNNLANASTVGFKKSRAIFEDLLYQNINQPGANATQNT 60

Query: 57  SENKNMFDK------VLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKL 107
                +          +  + S         S + + +       +    +S      + 
Sbjct: 61  KLPSGLMIGAGAKVVAVQKNFSQGNALTTKNSLDIMIDGRGFFEIEMPDGSSGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           + + +               I    + +     S  EV    A   +   +   N+  F+
Sbjct: 121 QLNEDGIIVTPGSGYALMPQIQIPNDALSISVGSEGEVSVRIAGQVENQVVGQINVNDFV 180

Query: 168 SELTVVNDAIKFKTASKHD 186
           +   +        T +   
Sbjct: 181 NPSGLEPMGENLYTETGAS 199


>gi|237799211|ref|ZP_04587672.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|330961201|gb|EGH61461.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           maculicola str. ES4326]
 gi|331022066|gb|EGI02123.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 130 TANGYALEPAIVVPQAAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 248 ISTADQMLQNLTQ 260



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/264 (6%), Positives = 53/264 (20%), Gaps = 29/264 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A+           +I  N+ N     +                          
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97
                      V +V  +          L   ++ +      + F  + +      +  +
Sbjct: 61  ELPSGLQLGTGVRIVGTQKN---FTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRD 117

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
            +     +    +   Y+   +  +          +      T A      +   + +  
Sbjct: 118 GTFHLDANGQIVTANGYALEPAIVVPQAAQTFTVGQDGTVSVTLAGATATPQIIGNIQTA 177

Query: 158 LEISNLRRFLSELT-VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             I+            +               + L        + S +  +  +V     
Sbjct: 178 DFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITT 237

Query: 217 MVVYTSDGTTLFETVPRDINFEKM 240
              Y  +   +        N  + 
Sbjct: 238 QRAYEMNSKVISTADQMLQNLTQN 261


>gi|225569971|ref|ZP_03778996.1| hypothetical protein CLOHYLEM_06066 [Clostridium hylemonae DSM
           15053]
 gi|225161441|gb|EEG74060.1| hypothetical protein CLOHYLEM_06066 [Clostridium hylemonae DSM
           15053]
          Length = 294

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 79/302 (26%), Gaps = 8/302 (2%)

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
              +           +  +    + I  ++T    +       +    +  +   ++N  
Sbjct: 1   MVKSMYAAIAGLRSHQSKMDVISNNIANVNTWGYKSRSANFQDAMYQNVINSTAGNVNAG 60

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
                  +     + +  +  +   GS    G     +   +         + +    + 
Sbjct: 61  GTGGQNSSQLGYGVNVGSITTNFTTGSWGFTGDPLNCMINGNGFFI-VGPMIADPTDGIA 119

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +      ++ +   +  +     + D       G ++                   +  
Sbjct: 120 SNNFATSGLSLSRVGIFSVDNNGYLIDDGRNYVYGFTQNADGTWDTDVLRPLQIPNDATG 179

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
           +++      +     +     D          +A +     L + A             +
Sbjct: 180 EQYKIQTYKIGTDGTITGITFDKEQITIGKLALAAVENPNGLEQSAGYLYSAGPNAGQIT 239

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                           +Y     V L  +++ +I  ++ Y  ++K+I  TD+ML+ L+  
Sbjct: 240 AVEGDY-------FLSNYLEMSNVELASDMASMITTQRGYQANSKIITVTDEMLEQLVNM 292

Query: 479 VK 480
            +
Sbjct: 293 KR 294



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 46/205 (22%), Gaps = 21/205 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
               A     +   +   I  NI N +   Y  R                      M+  
Sbjct: 4   SMYAAIAGLRSHQSKMDVISNNIANVNTWGYKSRSANFQ---------------DAMYQN 48

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           V+++ +  +          +             + T           +   N +   +  
Sbjct: 49  VINSTAGNVNAGGTGGQNSSQLGYGVNVGSITTNFTTGSWGFTGDPLNCMINGNGFFIVG 108

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            +I +  + + + N +   +   R                +L +          + A   
Sbjct: 109 PMIADPTDGIASNNFATSGLSLSRVGIFSVDN------NGYLIDDGRNYVYGFTQNADGT 162

Query: 186 DAHDFLDQRDVLLQKISEIIGISTI 210
              D L    +      E   I T 
Sbjct: 163 WDTDVLRPLQIPNDATGEQYKIQTY 187


>gi|119899025|ref|YP_934238.1| flagellar basal body rod protein FlgG [Azoarcus sp. BH72]
 gi|119671438|emb|CAL95351.1| flagellar basal-body rod protein FlgG [Azoarcus sp. BH72]
          Length = 260

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 70/252 (27%), Gaps = 4/252 (1%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +  + + +++      +N       V        + +   ++  Q +         
Sbjct: 11  GLDAQQTSLDVISNNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSTQQTQVGSGLQIGT 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +  +A   I +        G+ +          I   D            ++ Q     
Sbjct: 71  GVRPVATERIFTQGNLQQTGGSLDIAIQGNGFFQIALPDGTTAYTRDGAFQLDNQGNVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARN 406
           +               +         ++                +A    +  L     N
Sbjct: 131 ASGYPLADNINIPADTLTVTVAKDGTVSVLQAGQTTPTQIGAIQLATFINSGGLQSAGEN 190

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +LE   S     +         +++ Y  T  VN+ EEL  +I  +++Y ++++ I 
Sbjct: 191 L--FLESASSGVATPNQPGTNGTGVLNQGYVETSNVNVAEELVNMIVTQRAYEMNSRAIQ 248

Query: 467 FTDKMLQTLLEG 478
            +D ML  L + 
Sbjct: 249 TSDSMLGRLTQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 57/259 (22%), Gaps = 28/259 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWTARTGLDAQQTSLDVISNNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSTQQT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                + + T        +      L     ++        F  +            +  
Sbjct: 61  QVGSGLQIGTGVRPVATERIFTQGNLQQTGGSLDIAIQGNGFFQIA------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   +      S   L   +   A+ +          V  ++A      ++   
Sbjct: 115 TRDGAFQLDNQGNVVTASGYPLADNINIPADTLTVT-VAKDGTVSVLQAGQTTPTQIGAI 173

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            L  F++   + +        S        +Q       +     + T   N  + +V  
Sbjct: 174 QLATFINSGGLQSAGENLFLESASSGVATPNQPGTNGTGVLNQGYVETSNVNVAEELVNM 233

Query: 222 SDGTTLFETVPRDINFEKM 240
                 +E   R I     
Sbjct: 234 IVTQRAYEMNSRAIQTSDS 252


>gi|148266116|ref|YP_001232822.1| flagellar basal body rod protein FlgG [Geobacter uraniireducens
           Rf4]
 gi|146399616|gb|ABQ28249.1| flagellar basal-body rod protein FlgG [Geobacter uraniireducens
           Rf4]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 4/185 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +           +          I+  D       + +   + Q R   S        
Sbjct: 80  IFTAGNITQTGNEMDLAIEGEGFFQIQMPDGSTNYSRAGSFKKDSQGRMVNSDGYPLLPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   K   G    ++      N         +A  +    L     N   +   + 
Sbjct: 140 VIIPNNATKITVGNDGTVSVMQSGQNTPTSVGTIQLATFSNPAGLSSLGHNL--YQPTDS 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +       Q     +S+ +     V++ EE+  +I  +++Y I++K +   D+MLQT 
Sbjct: 198 SGAATTGTSGQNGIGTLSQGFLEMSNVSVMEEMVNMIVGQRAYEINSKAVQAADEMLQTA 257

Query: 476 LEGVK 480
               +
Sbjct: 258 NNLRR 262



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/266 (6%), Positives = 56/266 (21%), Gaps = 28/266 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A +           +  N+ N +   + +                        
Sbjct: 1   MIRALWTAASGMQAQQLNIDVVANNLANVNTTGFKKSRADFQDLMYQNLKTSGAPSTNAT 60

Query: 47  --PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V       + +K      +    + +      + F  ++          ++  
Sbjct: 61  QIPTGIQVGLGSKAAAVSKIFTAGNITQTGNEMDLAIEGEGFFQIQ------MPDGSTNY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   +    N     L   VI                V  +++  +    +   
Sbjct: 115 SRAGSFKKDSQGRMVNSDGYPLLPEVIIPNNATKITVGN-DGTVSVMQSGQNTPTSVGTI 173

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            L  F +   + +        +                       +     +  + +V  
Sbjct: 174 QLATFSNPAGLSSLGHNLYQPTDSSGAATTGTSGQNGIGTLSQGFLEMSNVSVMEEMVNM 233

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTS 247
             G   +E   + +        T  +
Sbjct: 234 IVGQRAYEINSKAVQAADEMLQTANN 259


>gi|17989431|ref|NP_542064.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1
           str. 16M]
 gi|23499916|ref|NP_699356.1| flagellar basal body rod protein FlgG [Brucella suis 1330]
 gi|62317103|ref|YP_222956.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 1 str.
           9-941]
 gi|83269095|ref|YP_418386.1| flagellar basal body rod protein FlgG [Brucella melitensis biovar
           Abortus 2308]
 gi|148557926|ref|YP_001257213.1| flagellar basal body rod protein FlgG [Brucella ovis ATCC 25840]
 gi|161620236|ref|YP_001594122.1| flagellar basal body rod protein FlgG [Brucella canis ATCC 23365]
 gi|163844346|ref|YP_001622001.1| flagellar basal body rod protein FlgG [Brucella suis ATCC 23445]
 gi|189022368|ref|YP_001932109.1| flagellar basal body rod protein FlgG [Brucella abortus S19]
 gi|225628625|ref|ZP_03786659.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo]
 gi|237816665|ref|ZP_04595657.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308
           A]
 gi|254691412|ref|ZP_05154666.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 6 str.
           870]
 gi|254695290|ref|ZP_05157118.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702576|ref|ZP_05164404.1| flagellar basal body rod protein FlgG [Brucella suis bv. 3 str.
           686]
 gi|254706292|ref|ZP_05168120.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis
           M163/99/10]
 gi|254711414|ref|ZP_05173225.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis
           B2/94]
 gi|254720610|ref|ZP_05182421.1| flagellar basal body rod protein FlgG [Brucella sp. 83/13]
 gi|254731833|ref|ZP_05190411.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 4 str.
           292]
 gi|256029956|ref|ZP_05443570.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis
           M292/94/1]
 gi|256043073|ref|ZP_05446017.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256059608|ref|ZP_05449806.1| flagellar basal body rod protein FlgG [Brucella neotomae 5K33]
 gi|256111943|ref|ZP_05452894.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 3
           str. Ether]
 gi|256158118|ref|ZP_05456036.1| flagellar basal body rod protein FlgG [Brucella ceti M490/95/1]
 gi|256252928|ref|ZP_05458464.1| flagellar basal body rod protein FlgG [Brucella ceti B1/94]
 gi|256256598|ref|ZP_05462134.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 9 str.
           C68]
 gi|260544341|ref|ZP_05820162.1| flagellar basal body rod protein [Brucella abortus NCTC 8038]
 gi|260564303|ref|ZP_05834788.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568516|ref|ZP_05838985.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40]
 gi|260757026|ref|ZP_05869374.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str.
           870]
 gi|260759602|ref|ZP_05871950.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str.
           292]
 gi|260882836|ref|ZP_05894450.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str.
           C68]
 gi|261215659|ref|ZP_05929940.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str.
           Tulya]
 gi|261220019|ref|ZP_05934300.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94]
 gi|261313736|ref|ZP_05952933.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis
           M163/99/10]
 gi|261319022|ref|ZP_05958219.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis
           B2/94]
 gi|261323577|ref|ZP_05962774.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33]
 gi|261753156|ref|ZP_05996865.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str.
           686]
 gi|265985650|ref|ZP_06098385.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13]
 gi|265986975|ref|ZP_06099532.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis
           M292/94/1]
 gi|265989511|ref|ZP_06102068.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993390|ref|ZP_06105947.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3
           str. Ether]
 gi|265996635|ref|ZP_06109192.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1]
 gi|297249954|ref|ZP_06933655.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str.
           B3196]
 gi|306838572|ref|ZP_07471409.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653]
 gi|306841049|ref|ZP_07473773.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2]
 gi|17985308|gb|AAL54328.1| flagellar basal-body rod protein flgg [Brucella melitensis bv. 1
           str. 16M]
 gi|23463493|gb|AAN33361.1| flagellar basal-body rod protein FlgG [Brucella suis 1330]
 gi|62197296|gb|AAX75595.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 1 str.
           9-941]
 gi|82939369|emb|CAJ12317.1| Flagellar basal body rod protein [Brucella melitensis biovar
           Abortus 2308]
 gi|148369211|gb|ABQ62083.1| flagellar basal-body rod protein FlgG [Brucella ovis ATCC 25840]
 gi|161337047|gb|ABX63351.1| flagellar basal-body rod protein FlgG [Brucella canis ATCC 23365]
 gi|163675069|gb|ABY39179.1| flagellar basal-body rod protein FlgG [Brucella suis ATCC 23445]
 gi|189020942|gb|ACD73663.1| Flagellar basal body rod protein [Brucella abortus S19]
 gi|225616471|gb|EEH13519.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo]
 gi|237787478|gb|EEP61694.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308
           A]
 gi|260097612|gb|EEW81486.1| flagellar basal body rod protein [Brucella abortus NCTC 8038]
 gi|260151946|gb|EEW87039.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155181|gb|EEW90262.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40]
 gi|260669920|gb|EEX56860.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str.
           292]
 gi|260677134|gb|EEX63955.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str.
           870]
 gi|260872364|gb|EEX79433.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str.
           C68]
 gi|260917266|gb|EEX84127.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str.
           Tulya]
 gi|260918603|gb|EEX85256.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94]
 gi|261298245|gb|EEY01742.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis
           B2/94]
 gi|261299557|gb|EEY03054.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33]
 gi|261302762|gb|EEY06259.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis
           M163/99/10]
 gi|261742909|gb|EEY30835.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str.
           686]
 gi|262550932|gb|EEZ07093.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1]
 gi|262764260|gb|EEZ10292.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3
           str. Ether]
 gi|263000180|gb|EEZ12870.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659172|gb|EEZ29433.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis
           M292/94/1]
 gi|264664242|gb|EEZ34503.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13]
 gi|297173823|gb|EFH33187.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str.
           B3196]
 gi|306288938|gb|EFM60238.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2]
 gi|306406358|gb|EFM62600.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     T                     
Sbjct: 3   ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R           +   +        + +  ++           + 
Sbjct: 63  PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     L  + +   +    + +      + +   K++   ++    ++
Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173

Query: 161 SNLRRF 166
           +     
Sbjct: 174 TLANFT 179



 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + I     +     +       +        +    +  +     
Sbjct: 65  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  +      +           V                   +     +A       L
Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S    + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 185 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 243 NSKVIQAADEM 253


>gi|253998486|ref|YP_003050549.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4]
 gi|313200561|ref|YP_004039219.1| flagellar basal-body rod protein flgg [Methylovorus sp. MP688]
 gi|253985165|gb|ACT50022.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4]
 gi|312439877|gb|ADQ83983.1| flagellar basal-body rod protein FlgG [Methylovorus sp. MP688]
          Length = 260

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 59/184 (32%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+      ++   A +       F    + D      +  S  +    Q  +   + 
Sbjct: 76  ATERIFSQGNLQQTENAKDLAINGEGFFQVLLPDGSTAYTRDGSFQVDNQGQMVTASGYT 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       ++         +               +A       L     N   ++
Sbjct: 136 IQPAITIPANAQSITVGRDGTVSVTLPNSVATTQIGTIQLATFINPAGLQSKGENL--YV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E + S +   +         +++ Y  T  VN+ EEL  +I+ +++Y I++K I  +D+M
Sbjct: 194 ETSASGTASTNTPGANGAGVLNQGYVETSNVNVVEELVSMIQTQRAYEINSKAITTSDQM 253

Query: 472 LQTL 475
           LQ L
Sbjct: 254 LQRL 257



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/214 (7%), Positives = 42/214 (19%), Gaps = 36/214 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQSSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    +A       + F  +           +
Sbjct: 61  QLPSGMQLGTGVKPVATERI---FSQGNLQQTENAKDLAINGEGFFQVL------LPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKE 155
           +        +   +      S   +   +   A      V    T +  +    A     
Sbjct: 112 TAYTRDGSFQVDNQGQMVTASGYTIQPAITIPANAQSITVGRDGTVSVTLPNSVATTQIG 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                + +     +    N  ++   +     + 
Sbjct: 172 TIQLATFINPAGLQSKGENLYVETSASGTASTNT 205


>gi|157376214|ref|YP_001474814.1| flagellar basal body rod protein FlgG [Shewanella sediminis
           HAW-EB3]
 gi|157318588|gb|ABV37686.1| flagellar basal-body rod protein FlgG [Shewanella sediminis
           HAW-EB3]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    +V           + +       F    +
Sbjct: 48  TVNQAGGVSASNTKLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSMDLMVEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYVVQPAITIPENATGITVSAEGEVSVKTPGTAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           ++      +        L    +N         S +      S      I +    T  V
Sbjct: 168 SQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 33/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53
           +      ++   +      + I  N+ NA    Y +   +              V+    
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60

Query: 54  ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  + +    + +     +                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSMDLMVEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E       ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVVQPAITIPENATGITVSAEGEVS 159


>gi|119775448|ref|YP_928188.1| flagellar basal body rod protein FlgG [Shewanella amazonensis SB2B]
 gi|119767948|gb|ABM00519.1| flagellar basal-body rod protein FlgG [Shewanella amazonensis SB2B]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 67/210 (31%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           A +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNALDMMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    ++    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTTAYTRNGQFSLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVSVKTPGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           ++      ++       L    +N   +LE   S +      S      I +    T  V
Sbjct: 168 SQIVGQLTLSDFINPSGLDPIGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNALDMMIEGPGFFEIQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   +       ++  EV 
Sbjct: 121 SLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVS 159


>gi|15642194|ref|NP_231826.1| flagellar basal body rod protein FlgG [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586257|ref|ZP_01676047.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80]
 gi|121726538|ref|ZP_01679787.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52]
 gi|147674573|ref|YP_001217712.1| flagellar basal body rod protein FlgG [Vibrio cholerae O395]
 gi|153213600|ref|ZP_01948873.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587]
 gi|153817095|ref|ZP_01969762.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457]
 gi|153820850|ref|ZP_01973517.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33]
 gi|153825330|ref|ZP_01977997.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2]
 gi|153829351|ref|ZP_01982018.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39]
 gi|183179567|ref|ZP_02957778.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3]
 gi|227082319|ref|YP_002810870.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2]
 gi|229507728|ref|ZP_04397233.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286]
 gi|229512077|ref|ZP_04401556.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33]
 gi|229513839|ref|ZP_04403301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21]
 gi|229519213|ref|ZP_04408656.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9]
 gi|229522144|ref|ZP_04411561.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80]
 gi|229524190|ref|ZP_04413595.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis
           VL426]
 gi|229528800|ref|ZP_04418190.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)]
 gi|229607232|ref|YP_002877880.1| flagellar basal body rod protein FlgG [Vibrio cholerae MJ-1236]
 gi|254225803|ref|ZP_04919408.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51]
 gi|254849324|ref|ZP_05238674.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10]
 gi|255747106|ref|ZP_05421051.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101]
 gi|262161350|ref|ZP_06030460.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1]
 gi|262167779|ref|ZP_06035481.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27]
 gi|262191687|ref|ZP_06049863.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93]
 gi|297580841|ref|ZP_06942766.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385]
 gi|298500427|ref|ZP_07010232.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757]
 gi|9656751|gb|AAF95340.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549523|gb|EAX59549.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80]
 gi|121630991|gb|EAX63370.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52]
 gi|124115799|gb|EAY34619.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587]
 gi|125621709|gb|EAZ50038.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51]
 gi|126512363|gb|EAZ74957.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457]
 gi|126521642|gb|EAZ78865.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33]
 gi|146316456|gb|ABQ20995.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395]
 gi|148875192|gb|EDL73327.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39]
 gi|149741014|gb|EDM55083.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2]
 gi|183012978|gb|EDT88278.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3]
 gi|227010207|gb|ACP06419.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2]
 gi|227014091|gb|ACP10301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395]
 gi|229332574|gb|EEN98060.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)]
 gi|229337771|gb|EEO02788.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis
           VL426]
 gi|229341069|gb|EEO06074.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80]
 gi|229343902|gb|EEO08877.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9]
 gi|229349020|gb|EEO13977.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21]
 gi|229352042|gb|EEO16983.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33]
 gi|229355233|gb|EEO20154.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286]
 gi|229369887|gb|ACQ60310.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MJ-1236]
 gi|254845029|gb|EET23443.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10]
 gi|255735508|gb|EET90908.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101]
 gi|262023844|gb|EEY42543.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27]
 gi|262028661|gb|EEY47315.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1]
 gi|262032426|gb|EEY50988.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93]
 gi|297534667|gb|EFH73503.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385]
 gi|297541120|gb|EFH77174.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757]
 gi|327484714|gb|AEA79121.1| Flagellar basal-body rod protein FlgG [Vibrio cholerae LMA3894-4]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 57/189 (30%), Gaps = 3/189 (1%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +++    +V      +    + +       F    + D +    +    T+      
Sbjct: 69  GAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403
            ++ +  R    +          +    ++        +                 L   
Sbjct: 129 VTSGAGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPV 188

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +N   +L    S      +        I +S   T  VN+ EEL  +I+ ++ Y +++K
Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246

Query: 464 LIMFTDKML 472
           +I   DKM+
Sbjct: 247 VISAVDKMM 255



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/226 (7%), Positives = 47/226 (20%), Gaps = 20/226 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57
               ++   +      A+I  N+ NA    + +   +                       
Sbjct: 4   ALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63

Query: 58  ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110
                     +        +  +             +        + +       +    
Sbjct: 64  SGLMLGAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123

Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            E            +  I   E+     + N    +  V+  + +        +  +   
Sbjct: 124 DEGAIVTSGAGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183

Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 184 GLEPVGQNLYLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTE 229


>gi|309788147|ref|ZP_07682753.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617]
 gi|308923999|gb|EFP69500.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617]
          Length = 156

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 2/158 (1%)

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             + D  +   +  S  +  N Q  +   F             ++         +     
Sbjct: 1   MMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQ 60

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +         +     +  L     N     E   S + +           + + Y  T 
Sbjct: 61  AAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSGAPNESTPGLNGAGLLYQGYVETS 118

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EEL  +I+V+++Y I++K +  TD+MLQ L + 
Sbjct: 119 NVNVAEELVNMIQVQRAYEINSKAMSTTDQMLQKLTQL 156


>gi|51599025|ref|YP_073213.1| flagellar basal body rod protein FlgG [Borrelia garinii PBi]
 gi|51573596|gb|AAU07621.1| flagellar basal-body rod protein [Borrelia garinii PBi]
          Length = 265

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +S      V++
Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEIAGIPGSEGMGILRQSILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          ++     A +          +I  N+ N +   + +               TQ       
Sbjct: 1  MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56

Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89
           +  L    + +G    + + + + E 
Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83


>gi|24374755|ref|NP_718798.1| flagellar basal body rod protein FlgG [Shewanella oneidensis MR-1]
 gi|24349419|gb|AAN56242.1|AE015761_12 flagellar basal-body rod protein FlgG [Shewanella oneidensis MR-1]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S       ++         ++   ++       + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPPITIPEDATSITVSAEGEVSVKTPGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      + I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E+      ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPPITIPEDATSITVSAEGEVS 159


>gi|289679021|ref|ZP_06499911.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           syringae FF5]
 gi|330972416|gb|EGH72482.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 248 ISTADQMLQNLTQ 260



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/246 (5%), Positives = 45/246 (18%), Gaps = 36/246 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A+           +I  N+ N     +                          
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +V  +          L   ++ +      + F  + +          
Sbjct: 61  ELPSGLQLGTGVRIVGTQKN---FTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKE 155
                               +   L   ++              T +  +    A     
Sbjct: 112 IAYSRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQII 171

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
             ++ ++         +  +      +S            +     + +   +       
Sbjct: 172 GNIQTADFINPAGLQAMGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEEL 231

Query: 216 DMVVYT 221
             ++ T
Sbjct: 232 VNMITT 237


>gi|260779347|ref|ZP_05888239.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605511|gb|EEX31806.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450]
          Length = 362

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/363 (8%), Positives = 72/363 (19%), Gaps = 9/363 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  +  + +  +I  NI NA    +    T        +        +     +
Sbjct: 2   SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVYNGMQPGGVEVAS---ISQ 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               + S  G  R +             D                 ++Y    +   L  
Sbjct: 59  NFDKNGSVSGTGRAMDLAINGNGFFVTKDSAGQLLYTRSGVFGTDKDNYVIGNTGAKLQG 118

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             +D    +             I+             +    +     +   +       
Sbjct: 119 YSVDGNNNL------LTGATGDIKISTSSLAAKATDKMEFIANLDATNSIVDQTVNPFDP 172

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
           +  D  +         S+    +                  +              +   
Sbjct: 173 NNTDSFNSSYTTKVYDSQGKPHTVTQYFTKTADNVWEVNVQVDGGAGAVSTVAMTFNPDG 232

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           +  +     +    ++          +    Q          N     +  L G   E +
Sbjct: 233 SIATPTGAYNVSFPAAGANPMSIDIDLSGSTQFGTGFGVSTNNPNGYTSGELAGVRVEDN 292

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +   +       +   +   D    QG+S+          +      G   S       
Sbjct: 293 GMVYATYTNGQSQLQGQVVLADFANPQGLSKVSGTAWTQSFSSGAPVMGVPGSGTLGDLT 352

Query: 366 KNL 368
              
Sbjct: 353 PGA 355


>gi|258404727|ref|YP_003197469.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense
           DSM 5692]
 gi|257796954|gb|ACV67891.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense
           DSM 5692]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 72/258 (27%), Gaps = 5/258 (1%)

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           + T+  T       +    + + +      +       V                   + 
Sbjct: 1   MTTALSTAATGMEAQQTIVDVIANNLANVNTTGFKKSRVDFQDLLYQDARNVGSAVTQEN 60

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
                    + +   A   I +  + +      +          +   D +     +  +
Sbjct: 61  DVPTGTQIGHGVRTAAVYKINTIGDINRTGNELDLAIEGDGFFQVTLPDGETAYTRAGAL 120

Query: 339 CVNPQ---YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +       S+   L     + +     V    G          +   +     +A  +
Sbjct: 121 KKDGDGRVVTSDGYPLEPEIVIPENATDVVIGKDGTVQAYLEGEAATPSDLGTIELARFS 180

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N    LE   S +  + +  +     +++++     V+  +E+  +I  +
Sbjct: 181 NPAGLKNIGNNL--HLETQSSGAPIVDLPGEDGLGALAQNFLEDSNVSTMQEMVNMISAQ 238

Query: 456 QSYNISNKLIMFTDKMLQ 473
           ++Y I++K +   D+MLQ
Sbjct: 239 RAYEINSKAVKTADEMLQ 256



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/242 (6%), Positives = 50/242 (20%), Gaps = 30/242 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +    + A             I  N+ N +   + +                        
Sbjct: 1   MTTALSTAATGMEAQQTIVDVIANNLANVNTTGFKKSRVDFQDLLYQDARNVGSAVTQEN 60

Query: 45  ISPENVTVVTQRSENKNM---FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P    +                 ++   + +        F  +            +  
Sbjct: 61  DVPTGTQIGHGVRTAAVYKINTIGDINRTGNELDLAIEGDGFFQV------TLPDGETAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI---DNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                L+   +          L   ++   +  + V+    T    ++   A       +
Sbjct: 115 TRAGALKKDGDGRVVTSDGYPLEPEIVIPENATDVVIGKDGTVQAYLEGEAATPSDLGTI 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           E++          + N+      +S     D   +  +     + +   +         +
Sbjct: 175 ELARFSNPAGLKNIGNNLHLETQSSGAPIVDLPGEDGLGALAQNFLEDSNVSTMQEMVNM 234

Query: 219 VY 220
           + 
Sbjct: 235 IS 236


>gi|254505064|ref|ZP_05117215.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11]
 gi|222441135|gb|EEE47814.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      +A    +V L     N   + E   S +    +     F  + + Y  +  
Sbjct: 166 QPREIGQLSLANFANDVGLEPVGGNL--FRETPASGAPVAGVPGDPGFGVVRQGYLESSN 223

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V+  +E++ LI  ++ Y +++K++   D+M  T+  G++
Sbjct: 224 VDPVKEITALISAQRGYEMNSKVMKAADEMANTVTNGIR 262



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 38/184 (20%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        +  NI N +  ++ R     +                     
Sbjct: 3   ALAIAATGMSAQQLNVEVVANNIANMNTTSFKRAQAEFSDLLYQAERLQGVPNRGGEDPV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L    +        + +  +          + S 
Sbjct: 63  PEGAQLGLGVKTAGIRKLH---MQGPLTNTGNQFDIALDGRGWFEI------TGPDDESL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     +    +   +I   E +    N + +   KI  +       ++
Sbjct: 114 YTRAGSFNKNADGRLVTIDGYTVEPAIIVPEETIEVVINETGQVYSKIDGEIQPREIGQL 173

Query: 161 SNLR 164
           S   
Sbjct: 174 SLAN 177


>gi|163750568|ref|ZP_02157806.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99]
 gi|161329723|gb|EDQ00712.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    +V           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  ++ S      +++         ++   ++         
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTSGSGYVVQPAITIPDNATSITVSAEGEVSVKMPGTIE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      ++       L    +N   +LE   S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNL--YLETGASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIQSQRIYEMNSKVISAVDQML 255



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           + A    ++   +      + I  N+ NA    Y +   +                + N 
Sbjct: 1   MQAALWISKTGLDAQQTNISVISNNLANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   +       ++  EV 
Sbjct: 121 TLDDTGQIVTSGSGYVVQPAITIPDNATSITVSAEGEVS 159


>gi|27380965|ref|NP_772494.1| hypothetical protein bll5854 [Bradyrhizobium japonicum USDA 110]
 gi|27354131|dbj|BAC51119.1| bll5854 [Bradyrhizobium japonicum USDA 110]
          Length = 754

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/440 (8%), Positives = 97/440 (22%), Gaps = 8/440 (1%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
            + T     VT     S N  +        S   G         ++    +       + 
Sbjct: 323 AIQTAGGAGVTASLSASGNIQISTGTGTDVSIGSGTAATALGISSVTRGGNVLSSPALTG 382

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
              +S    +        S    G                ++      + +    I   +
Sbjct: 383 ATVLSGSATA-GGAEVLSSGFSAGPPADTITVNGQTLTFMASGASGPNQINITDNITTLL 441

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +                 T +     +            +     +     +      
Sbjct: 442 GKIDALSGASGSSISPGGVITLNTGTVSNLSVSSSNSAAFAALGFTSTITKNRDGGGTAG 501

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           T              +          +   P+ +      ++  S          L  + 
Sbjct: 502 TGGVIGNDIATFTKESISGGAVTAYNAAGTPVNLQLRWAKTDSASLGTGHSDTWNLFYQT 561

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                                ++    + +   +    ++ G + L +      S  +  
Sbjct: 562 DPNATGTTVGWVNTGQAFTFAADGSLTSPSGSGITINNVSVGGQALGSVAFNISSGGLTQ 621

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   +      +           +     ++  + +  N +     ++  N    L
Sbjct: 622 YASTSGAVTINTITQNGYAAGQLRSVAVNNNGLVVGTFSNGQNLDLAQVSLSHFNGTNYL 681

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                          + +             IS S       ++ +E + LI  +Q+Y+ 
Sbjct: 682 K-------ALDGGAYAATEQSGPAIDGASGTISGSSLEGSNTDIADEFTKLIVTQQAYSA 734

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
           + K+I   + M+Q LL  ++
Sbjct: 735 NTKVITTANSMVQDLLNVLR 754



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/431 (8%), Positives = 85/431 (19%), Gaps = 20/431 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52
           M +    N +       S    +I  NI N+    Y    T              +    
Sbjct: 1   MGIFDAMNTSVGGLQAQSYALQNISGNIANSSTTGYKGIGTSFVDLIPDASVPSKQVAGG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108
           VT  ++        + + S A         F ++++  S  D+       +        +
Sbjct: 61  VTANAKATITTQGTISSSSVATNMAITGDGFFSIQKATSVVDNLPQFGGVTYYTRRGDFQ 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-----AREVQKIRADADKEIELEISNL 163
            +      N +   L    +D      Q    +        +      + +      +  
Sbjct: 121 LNSNGNLVNGAGYYLMGVTVDPKTGNPQGNVATVLKFQNNFIPAQATTSIQYAANLPTQP 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S        +     +  D               +           N      ++ 
Sbjct: 181 NTAASSTAASKTLLAAGGLNPSDFQANPLPVGTPPAPYTSATVSGAAATGNIRSAYSSTT 240

Query: 224 GT---TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
           GT    L        +       TV +      +  +       +            +  
Sbjct: 241 GTGTVPLQNNSSAVASTSTSLDNTVGTHLASSILTALSGQVLTINGSNTITFNGGTTVST 300

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                           +    +      G           +            I      
Sbjct: 301 VGNNTTIGLGAGTTATVASILNAIQTAGGAGVTASLSASGNIQISTGTGTDVSIGSGTAA 360

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                S+ +   +  S        V + +            F+     D +      +T 
Sbjct: 361 TALGISSVTRGGNVLSSPALTGATVLSGSATAGGAEVLSSGFSAGPPADTITVNGQTLTF 420

Query: 401 LEYARNSIGWL 411
           +    +    +
Sbjct: 421 MASGASGPNQI 431


>gi|289679027|ref|ZP_06499917.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5]
          Length = 377

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 53/246 (21%), Gaps = 16/246 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN A +  + A+++      NI N     +       +    +  +   +    +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61

Query: 66  VLHAHSSAIGQQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +   G+  +                      +              ++  +    
Sbjct: 62  ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L     ++  E+                  D +I+      R   +    +N      +
Sbjct: 122 RLQGYAANDKGEIASGIR------------TDLQIDTSNVGARATTTVAETINLDASLPS 169

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            ++    D  D           I  +        D  +      T        +  +  N
Sbjct: 170 LARLPTFDPDDPATYTRVATRTIQDVGITPVPAADHELKQYFVKTEANQWSMYVLVDGRN 229

Query: 242 SYTVTS 247
                S
Sbjct: 230 PVDPDS 235


>gi|323492336|ref|ZP_08097489.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG
           20546]
 gi|323313383|gb|EGA66494.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG
           20546]
          Length = 261

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 77  TQKVFTQGNTQNTSQQYDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          ++               S  +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNALSLSVGVDGTVTATTVDSSTPEQLGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D     +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGQADELTAGEDGVGIIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 31/153 (20%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   S       + Q F  ++              
Sbjct: 61  ELPSGVQLGSGVRVVGTQKVFTQGNTQNTSQQYDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
               +   + E    N     L   +      +
Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPDNAL 147


>gi|82702455|ref|YP_412021.1| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC
           25196]
 gi|82410520|gb|ABB74629.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 260

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
               +      ++   + +       F      D      +  S       Q  ++  + 
Sbjct: 76  ATEHIFTQGNLQQTGNSKDVAIQGQGFFQVLRPDGSTAYTRDGSFQTDFEGQLVTSSGYH 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       ++         +     +         +A       L     N   ++
Sbjct: 136 VQPAITIPPNAQSITVGRDGIVSVTTQDSTTPVQVGNLQLATFINPAGLQSVGENL--YV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + ++          +++ Y  T  VN+ EEL  +I+ +++Y I++K +  +D+M
Sbjct: 194 ETASSGTPNVTNPGTDGAGLLNQGYVETSNVNVVEELVNMIQTQRAYEINSKSVQTSDQM 253

Query: 472 LQTLLEG 478
           LQ L + 
Sbjct: 254 LQRLTQL 260



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 50/234 (21%), Gaps = 31/234 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    ++       Q F  +           ++  
Sbjct: 61  QLPSGLQLGTGVRPVATEHIFTQGNLQQTGNSKDVAIQGQGFFQVL------RPDGSTAY 114

Query: 102 HYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 +   E      S            +     V      +   Q            
Sbjct: 115 TRDGSFQTDFEGQLVTSSGYHVQPAITIPPNAQSITVGRDGIVSVTTQDSTTPVQVGNLQ 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIV 211
             + +     +    N  ++  ++   +  +   D   +L Q   E   ++ + 
Sbjct: 175 LATFINPAGLQSVGENLYVETASSGTPNVTNPGTDGAGLLNQGYVETSNVNVVE 228


>gi|158604896|gb|ABW74721.1| flagellar hook protein [Campylobacter concisus 13826]
          Length = 533

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/533 (10%), Positives = 125/533 (23%), Gaps = 55/533 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------TISPENVTVVT 54
           ++  F    +     S        NI N +N  +                 +    T   
Sbjct: 1   MMRGFYNGVSGIKTQSFGMDVWSNNISNINNVGFKASIPEFKNLINQNLVSAGSGPTSDQ 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                      +  ++ S                     D    +               
Sbjct: 61  VGLGATKQTTALDMSNGSFQSTDNNFDLAIGGDGFFGVVDKTGKNYYTRTGTFDIDAAGN 120

Query: 115 SKNLSEDILGKTVIDN---------------------AEEVVQNFNTSAREVQKIRADAD 153
             +   ++L  T+ +                      A  V Q   +      +      
Sbjct: 121 LVDTRGNLLLGTLANFTPTTPSATALKKYGQTSSAPQAYTVSQEELSLGDPGSQKGITLP 180

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV-- 211
             + +          +  + +  I  K  +  DA  +    D   + IS    I      
Sbjct: 181 HFLFMPAEATTNISLKGNLNSTRITDKKTTALDASQYAYTLDNTNKTISLNGQIPLSTTS 240

Query: 212 ----------------RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
                                    T +    ++   + + F    +  V SE   +   
Sbjct: 241 LGAKAGDSVVVKVKDGDGKFSEFSTTLEVDGTWQINDKSLKFMDFANLEVNSEVTSLVEV 300

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG----NS 311
                         G    +       +P   +Q    A   I   S             
Sbjct: 301 PNKEKLTSDIYNADGTKSLITINLTKQIPQTGDQTIWDAVATITDASGAVQNTAMGSLTF 360

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG---SVSKKFLWNVKNL 368
                L            L         V     S+ +  +D         + L +  ++
Sbjct: 361 NGSGRLVTNTLTSVGGVNLNFEGDGDADVYNGMTSSANARKDFNIKRDGYAEGLLSKYSV 420

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
               +++ ++ ++         +     +  + +   N       +       +   + V
Sbjct: 421 DDRGNIMANFDNTRAFPVAKVALYHFINDQGVAKVGDNLYEATANSGEPFFYKNKAGETV 480

Query: 429 FN-HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   I  +      V+L + LS +I  +++Y  S K I  +D+M+QT ++  K
Sbjct: 481 YGAQILANKLEMSNVDLGQALSEVIVTQKAYEASAKSITTSDEMIQTAIQMKK 533


>gi|219685570|ref|ZP_03540386.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04]
 gi|219672848|gb|EED29871.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04]
          Length = 265

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEITGIPGSEGMGILRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          ++     A +          +I  N+ N +   + +               TQ       
Sbjct: 1  MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIY----QTQNRAGTPA 56

Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEM 89
           +  L    + +G    + + + + E 
Sbjct: 57 TENTLRPLGNQVGHGTKIAATQRIFEQ 83


>gi|224370760|ref|YP_002604924.1| flagellar basal body rod protein FlgG [Desulfobacterium
           autotrophicum HRM2]
 gi|223693477|gb|ACN16760.1| FlgG2 [Desulfobacterium autotrophicum HRM2]
          Length = 260

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 52/175 (29%), Gaps = 2/175 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +  +        + V        +   D +L          +  + +  S  R    +
Sbjct: 80  IFTQGDYSQTGNELDFVIQGDGFFRVLHGDEELYTRAGNFTLDSEGFITTNSGDRLQPEI 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S      + +L     L     D          ++       L     N   + +   S 
Sbjct: 140 SIPVEATLISLQDNGTLTVTGADDTILATEQVNLSSFVNPAGLFAVGENL--FRQTEGSG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +        ++ ++     V++ EE+  +I  +++Y  ++K I   D ML
Sbjct: 198 PATEGIPGDAPLGTVANNFLEMSNVSVVEEMVNMIVGQRAYEANSKSIQTADTML 252



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 26/136 (19%), Gaps = 14/136 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------ISPENV 50
           ++     +    N    Q   +  N+ N+    + +                   +P   
Sbjct: 1   MIRALWTSATGMNAQQIQTDVVANNLANSSTAGFKKSRANFQDLMYQTMLVAGATTPGGG 60

Query: 51  TV--VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            +    Q                    Q      F    +      H +           
Sbjct: 61  QIPTGIQVGMGVRPSGVQKIFTQGDYSQTGNELDFVIQGDGFFRVLHGDEELYTRAGNFT 120

Query: 109 DSLESYSKNLSEDILG 124
              E +    S D L 
Sbjct: 121 LDSEGFITTNSGDRLQ 136


>gi|213026919|ref|ZP_03341366.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 149

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 2/151 (1%)

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +   +  S  +  N Q  +   F             ++         +     +      
Sbjct: 1   SAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVG 60

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +     +  L     N   ++E   S + +           + + Y  T  VN+ EE
Sbjct: 61  QLNLTTFMNDTGLESIGENL--YIETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEE 118

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           L  +I+V+++Y I++K +  TD+MLQ L + 
Sbjct: 119 LVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 149


>gi|121607559|ref|YP_995366.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae
           EF01-2]
 gi|121552199|gb|ABM56348.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae
           EF01-2]
          Length = 260

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 2/179 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
            +    ++     +       F    + D      +  S  +    +  +        G 
Sbjct: 81  FVQGSLQESRNNLDVAINGNGFFQVMLPDGSLGYTRDGSFQVDAQGRLVTANGLPVANGI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +V   A              +      +A       L    +N   + E   S
Sbjct: 141 TIAANAISVSISAEGAVSAIMPGSVQPQPLGNLAMASFINPAGLEPIGQNL--FKESAAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
                 +        I + +     +N+ EEL  +I+ +++Y +++K I  +D+ML  L
Sbjct: 199 GQPQQGIPGSNGLGVIKQGFLEASNINIVEELVTMIQTQRAYEMNSKAIQTSDQMLAKL 257



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/177 (7%), Positives = 33/177 (18%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   I  N+ N     Y R + M                    
Sbjct: 1   MIDALWIAKTGMSAQQTQLDVIAHNLANVSTTGYKRSNAMFEDLIYQNLRQVGANSTEQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    + +        F  +           +
Sbjct: 61  QLPTGLQLGLGVRTVATSRC---FVQGSLQESRNNLDVAINGNGFFQVM------LPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +   +      +   +   +   A  +  + +        +      +
Sbjct: 112 LGYTRDGSFQVDAQGRLVTANGLPVANGITIAANAISVSISAEGAVSAIMPGSVQPQ 168


>gi|330880522|gb|EGH14671.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 390

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/429 (8%), Positives = 80/429 (18%), Gaps = 46/429 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     +   G    L              +                E Y  N  
Sbjct: 62  TAAVSQQFSQGNLTTGTANSL-DLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSG 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV    +  R                ++NL    +  ++       
Sbjct: 121 GMKLQGYNVDANGSVVTGALSDLRVDSSNLQPKATTAITNVANLNSTTALPSL------- 173

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                                       +     N      T D      T+ +      
Sbjct: 174 -----------------------TTFDATDTKSYNMKYSTPTYDTQGNAHTLDQYFVKTG 210

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N++++ S  +   I     ++   + +       L+      VP     +         
Sbjct: 211 TNTWSMYSLMDGRSISDPTTTTADKNDLTFDSSGNLVVAAPGTVPTDSANIKFNTDGTFT 270

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
             +           V            +      I   +    Q  S    +        
Sbjct: 271 VANW-------VPGVQSGTGTTTSWGANGATGASIKLNMAGITQTASVSGLITQDQDGYA 323

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++    +L   Y +  ++      +        L +       W E   S   
Sbjct: 324 TGQLSAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQ--AGGTNWRETFASGVP 381

Query: 420 DLHMKSQVV 428
                    
Sbjct: 382 VSGTPQSGT 390


>gi|323697472|ref|ZP_08109384.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. ND132]
 gi|323457404|gb|EGB13269.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans
           ND132]
          Length = 260

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 53/182 (29%), Gaps = 2/182 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +  +        +          +    +++          +                +
Sbjct: 81  FTQGDFQNTGNPLDMAIEGEGFFQVMVNGDEVYTRDGSFELDSDGRVVTAGGYPLQPEFT 140

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +  +++    +     D          +        L+   RN   + E + S  
Sbjct: 141 VPPETSSISISETGTISALDKDGTVLATADIDLYRFQNPAGLIATGRNF--YRESDASGV 198

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                     +  I++ +     V + +E+  LI  ++++ I++K I  +D MLQT +  
Sbjct: 199 AVAGTPGDDNYGTIAQGFLEGSNVEMVDEMVGLIVGQRAFEINSKAITTSDGMLQTAINI 258

Query: 479 VK 480
            +
Sbjct: 259 KR 260



 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 8/162 (4%), Positives = 29/162 (17%), Gaps = 28/162 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     +         Q  ++  N+ N     + +                        
Sbjct: 1   MMRSLWTSATGMIAMQTQIDTLSNNLANVSTTAFKKSRAEFEDLMYQTLKIAGGENADGT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + +         +K           + +      + F  +           +   
Sbjct: 61  QTPVGMQIGMGVRPVSVHKFFTQGDFQNTGNPLDMAIEGEGFFQVM-------VNGDEVY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                     +          L        E    + + +  
Sbjct: 114 TRDGSFELDSDGRVVTAGGYPLQPEFTVPPETSSISISETGT 155


>gi|153011524|ref|YP_001372738.1| flagellar basal body rod protein FlgG [Ochrobactrum anthropi ATCC
           49188]
 gi|151563412|gb|ABS16909.1| flagellar basal-body rod protein FlgG [Ochrobactrum anthropi ATCC
           49188]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     +                     
Sbjct: 3   ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFSDLLYQSERTAGVPNQANQSIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R           +   +        + +  ++           + 
Sbjct: 63  PEGALVGLGVQTAAVR---NLHMQGSFNQTGNPFDLALTGKGWFQIQ------SPTGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     L  + +   +    + V      + +   K++   ++    ++
Sbjct: 114 YARAGAFNKNADGQLVTLDGNPVEPAITIPPDAVEVTVTDTGQVFAKLQDQVNQVDLGQL 173

Query: 161 SNLRRF 166
           +     
Sbjct: 174 TLANFT 179



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 56/215 (26%), Gaps = 8/215 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                   +   +    +  +      +    +               + N   L +   
Sbjct: 41  SDLLYQSERTAGVPNQANQSIVPEGALVGLGVQTAAVRNLHMQGSFNQTGNPFDLALTGK 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                                  ++   +   G+  +  +    +             + 
Sbjct: 101 GWFQIQSPTGETLYARAGAFNKNADGQLVTLDGNPVEPAITIPPDAVEVTVTDTGQVFAK 160

Query: 383 NKNFI------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
            ++ +         +A       L     N   + E   S    + +     +  I + Y
Sbjct: 161 LQDQVNQVDLGQLTLANFTNEAGLEPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 219 LEASNVDPVKEITDLITAQRAYEMNSKVIQAADEM 253


>gi|66046704|ref|YP_236545.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257411|gb|AAY38507.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078 [Pseudomonas syringae pv. syringae B728a]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 248 ISTADQMLQNLTQ 260



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/243 (6%), Positives = 47/243 (19%), Gaps = 30/243 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+           +I  N+ N     +                         +
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T         N     L   ++ +      + F  + +             
Sbjct: 61  ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158
                            +   L   ++              T +  +    A       +
Sbjct: 115 SRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNI 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           + ++         +  +      +S            +     + +   +         +
Sbjct: 175 QTADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234

Query: 219 VYT 221
           + T
Sbjct: 235 ITT 237


>gi|86146153|ref|ZP_01064479.1| polar flagellar FlgG [Vibrio sp. MED222]
 gi|218708806|ref|YP_002416427.1| flagellar basal body rod protein FlgG [Vibrio splendidus LGP32]
 gi|85836100|gb|EAQ54232.1| polar flagellar FlgG [Vibrio sp. MED222]
 gi|218321825|emb|CAV17796.1| Flagellar basal-body rod protein flgG [Vibrio splendidus LGP32]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 66/208 (31%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    + +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+  +    ++         +          +    ++        +  
Sbjct: 110 GETGYSRNGQFTLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGQQDNV 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N   +L    S      +       ++ +S      VN+
Sbjct: 170 VVGQITITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLNGLGNVRQSMLEASNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISAVDKMM 255



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/203 (5%), Positives = 40/203 (19%), Gaps = 19/203 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    + +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107
                        +                         +     +     +      + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163
             + +       +    +  I   E+     V N    +  ++  + +           +
Sbjct: 121 TLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGQQDNVVVGQITITDFV 180

Query: 164 RRFLSELTVVNDAIKFKTASKHD 186
                E    N  +    +    
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQ 203


>gi|95929874|ref|ZP_01312615.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684]
 gi|95134170|gb|EAT15828.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684]
          Length = 261

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 2/215 (0%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           S  P     A       +     ++   + +V       +     +       F    + 
Sbjct: 49  SKTPGSSTSADTVSPTGIQVGLGSRTAAVQKVFSTGDMMQTENELDLAIEGRGFFQVEMP 108

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D      +  +     + +  ++  +L     V  +   ++         +    +S + 
Sbjct: 109 DGTTAYTRSGALKKDGDGRLTTSEGYLLTPQIVIPENTTSISIGQDGTVDVFLDGESTST 168

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A  +    L    RN     E   S   +  +  +     +S+ Y     V++
Sbjct: 169 EIGVIEMAIFSNESGLRSLGRNLFA--ETLSSGVANTGIPGENGLGTLSQGYLEGSNVSV 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            EE+  +I  +++Y +++K I   D+MLQ     +
Sbjct: 227 MEEMVNMIAGQRAYEVNSKAIQTADEMLQMTNNLI 261



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/162 (6%), Positives = 33/162 (20%), Gaps = 27/162 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    ++       I  N+ N +   + +                        
Sbjct: 1   MIRALWTAATGMDSQQTNIDVIANNLANVNTSGFKKSRADFQELLYQVSKTPGSSTSADT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V          K      +    + +      + F  ++           +  
Sbjct: 61  VSPTGIQVGLGSRTAAVQKVFSTGDMMQTENELDLAIEGRGFFQVE------MPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                L+   +         +L   ++        +      
Sbjct: 115 TRSGALKKDGDGRLTTSEGYLLTPQIVIPENTTSISIGQDGT 156


>gi|28869144|ref|NP_791763.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|71735047|ref|YP_275559.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|213967579|ref|ZP_03395727.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tomato T1]
 gi|257484944|ref|ZP_05638985.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627766|ref|ZP_06460720.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651643|ref|ZP_06482986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487853|ref|ZP_07005893.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301385716|ref|ZP_07234134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060071|ref|ZP_07251612.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tomato K40]
 gi|302134830|ref|ZP_07260820.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|302185580|ref|ZP_07262253.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           syringae 642]
 gi|28852384|gb|AAO55458.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|71555600|gb|AAZ34811.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|213927880|gb|EEB61427.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tomato T1]
 gi|298157578|gb|EFH98658.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325096|gb|EFW81165.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329355|gb|EFW85348.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866425|gb|EGH01134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330880529|gb|EGH14678.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330986471|gb|EGH84574.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011045|gb|EGH91101.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331017022|gb|EGH97078.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 130 TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 190 GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 247

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 248 ISTADQMLQNLTQ 260



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/243 (6%), Positives = 47/243 (19%), Gaps = 30/243 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+           +I  N+ N     +                         +
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T         N     L   ++ +      + F  + +             
Sbjct: 61  ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTVAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158
                            +   L   ++              T +  +    A       +
Sbjct: 115 SRDGTFHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNI 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           + ++         +  +      +S            +     + +   +         +
Sbjct: 175 QTADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234

Query: 219 VYT 221
           + T
Sbjct: 235 ITT 237


>gi|315637964|ref|ZP_07893150.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis
           JV21]
 gi|315481999|gb|EFU72617.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis
           JV21]
          Length = 263

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 2/181 (1%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S+      + +       F    + D      +    T        +   +         
Sbjct: 85  SYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQFTRDNEGNVVNADGYRLIPEMTVP 144

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +   N+         +    +          +        L     N   +LE   S + 
Sbjct: 145 EGATNISIAKDGTVSVMLAGEQEETQIGQIELVQFINPAGLHSMGDNL--YLETGASGAP 202

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              +  Q    +I   +     V L EE++ LI  +++Y   +K I  +D+ML  + +  
Sbjct: 203 VAGIAGQDGLGNIRHGFVELSNVQLVEEMTDLITGQRAYEAGSKAITTSDEMLGIVNQLK 262

Query: 480 K 480
           +
Sbjct: 263 R 263



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/208 (7%), Positives = 39/208 (18%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAI-GQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K        + S+           F  ++           + 
Sbjct: 61  LSPSGIEVGLGVRPTAVTKVFTPGSYKSTSTDSFDMAIEGNGFFQIQ------LPDGTTA 114

Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                +     E    N     L              +    T +  +   + +      
Sbjct: 115 YTRNGQFTRDNEGNVVNADGYRLIPEMTVPEGATNISIAKDGTVSVMLAGEQEETQIGQI 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|306846278|ref|ZP_07478839.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1]
 gi|306273273|gb|EFM55142.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1]
          Length = 262

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     T                     
Sbjct: 3   ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R           +   +        + +  ++           + 
Sbjct: 63  PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     L  + +   +    + +      + +   K++   ++    ++
Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173

Query: 161 SNLRRF 166
           +     
Sbjct: 174 TLANFT 179



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + I     +     +       +        +    +  +     
Sbjct: 65  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  +      +           V                   +     +A       L
Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S S  + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 185 EPLGGNL--YRETEASGSPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 243 NSKVIQAADEM 253


>gi|114320059|ref|YP_741742.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226453|gb|ABI56252.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 261

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 2/167 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            + +       F    + D +    +  S  +    Q  ++  +             +V 
Sbjct: 91  NSLDIAIEGDGFFQILMPDGEIAYSRDGSFNVDDQGQMVTSSGYQLQPPINIPDDAVSVT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                         +  +      +A       L     N   + E   S    +     
Sbjct: 151 IGRDGTVSARLPGQADPQQLGNIQLADFINPAGLDAMGGNL--FRETAASGPPQISDPGL 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                + +    +  VN+ EEL  +I+ ++++  + K I  TD+MLQ
Sbjct: 209 DGVGTLLQGALESSNVNIAEELVNMIETQRAFETNTKAISSTDQMLQ 255



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/183 (6%), Positives = 34/183 (18%), Gaps = 33/183 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    +   +  N+ N +   + +                        
Sbjct: 1   MNPALWVAKTGLDAQQTRMQVVSNNLANVNTTGFKKDRANFEDLIYQTVRQAGGQSTQDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V +    +       +    +++        F  +            
Sbjct: 61  LLPTGLNLGTGVRVTSTEKIH---MQGNIQQTENSLDIAIEGDGFFQIL------MPDGE 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                        +      S   L   +    + V            ++   AD +   
Sbjct: 112 IAYSRDGSFNVDDQGQMVTSSGYQLQPPINIPDDAVSVTIGRDGTVSARLPGQADPQQLG 171

Query: 159 EIS 161
            I 
Sbjct: 172 NIQ 174


>gi|57505521|ref|ZP_00371448.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
 gi|57016068|gb|EAL52855.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
          Length = 263

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 2/181 (1%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S+      + +       F    + D      +    T        +   +         
Sbjct: 85  SYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQFTRDNEGNVVNADGYRLIPEMTVP 144

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
           +   N+         +    +          +        L     N   +LE   S + 
Sbjct: 145 EGATNISIAKDGTVSVMLAGEQEETQIGQIELVQFINPAGLHSMGDNL--YLETGASGAP 202

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              +  Q    +I   +     V L EE++ LI  +++Y   +K I  +D+ML  + +  
Sbjct: 203 VAGIAGQDGLGNIRHGFVELSNVQLVEEMTDLITGQRAYEAGSKAITTSDEMLGIVNQLK 262

Query: 480 K 480
           +
Sbjct: 263 R 263



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/208 (7%), Positives = 39/208 (18%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAI-GQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K        + S+           F  ++           + 
Sbjct: 61  LSPSGIEVGLGVRPTAVTKIFTPGSYKSTSTDSFDMAIEGNGFFQIQ------LPDGTTA 114

Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                +     E    N     L              +    T +  +   + +      
Sbjct: 115 YTRNGQFTRDNEGNVVNADGYRLIPEMTVPEGATNISIAKDGTVSVMLAGEQEETQIGQI 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|331005445|ref|ZP_08328824.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989]
 gi|330420721|gb|EGG95008.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989]
          Length = 400

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/345 (8%), Positives = 87/345 (25%), Gaps = 5/345 (1%)

Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
            +   +   V                        ++     I  +   +        + D
Sbjct: 59  TSAQQNGAGVTDAGTITSFAAGDIQQTGNSTDVAISGNGFFILREPDQQMYTRAGQFEFD 118

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
                 S  +G      + ++ +V  +                     +    ++ +   
Sbjct: 119 SDGFLSSTSLGSRVAGIDASNNLVDININQFNASPAVATSEIVFSGILSTNDTTHQVTDV 178

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
            ++ +S    +              S +    NQ   +              +       
Sbjct: 179 NLIDTSGSTESYSLTFTDNTAVTSGSWLIDVNNQAGTLIAD--DLEIRFSGDSTPQAGFN 236

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
            +        +  K     S T   +    +  +   D         +   N+     L 
Sbjct: 237 EVNFVHNTNTVTLKFGDAGSITGATSLSSGAASTLAVDSQDGLALGSFLDVNIGADGVLE 296

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
             Y +    +     +A  +   ++ +           +      +   S  +F  +   
Sbjct: 297 ASYSNGETADVGQLALAWFSDLQSMRQIGNGI---FLVSNEQQPIIGKGSSDIFGDLVGG 353

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 V L +E + LI +++ +  S++++  +++M+Q LL   +
Sbjct: 354 SIEISNVELTQEFTDLIIIQRGFQASSQIMSASNEMIQELLSVGR 398



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/317 (10%), Positives = 83/317 (26%), Gaps = 22/317 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------T 44
           MS  +    A       S+  +++  N+ N +   + R D +                 T
Sbjct: 1   MS-FSTIYTASTGMLTFSKGLSTVSNNVANLNTPGFKRSDLLFRDLFYQFQQSGEMDGQT 59

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            + +N   VT      +     +    ++         F  L+E                
Sbjct: 60  SAQQNGAGVTDAGTITSFAAGDIQQTGNSTDVAISGNGFFILREPDQQMYTRAGQFEFDS 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                S    S+    D     V  N  +   +   +  E+      +  +   +++++ 
Sbjct: 120 DGFLSSTSLGSRVAGIDASNNLVDININQFNASPAVATSEIVFSGILSTNDTTHQVTDVN 179

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDV-----LLQKISEIIGISTIVRNNNDMVV 219
              +  +  + ++ F   +   +  +L   +      +   +       +  +   + V 
Sbjct: 180 LIDTSGSTESYSLTFTDNTAVTSGSWLIDVNNQAGTLIADDLEIRFSGDSTPQAGFNEVN 239

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
           +  +  T+        +     S +  + S         ++      V  G    L    
Sbjct: 240 FVHNTNTVTLKFGDAGSITGATSLSSGAASTLAVDSQDGLALGSFLDVNIGADGVLEASY 299

Query: 280 DSVVPIFQNQLDEMARV 296
            +       QL      
Sbjct: 300 SNGETADVGQLALAWFS 316


>gi|182412238|ref|YP_001817304.1| hypothetical protein Oter_0414 [Opitutus terrae PB90-1]
 gi|177839452|gb|ACB73704.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1]
          Length = 312

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 67/280 (23%), Gaps = 11/280 (3%)

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
                     + G T   T+      +         +   I  +                
Sbjct: 32  NTTAYKSSSATYGDTFSNTLRAATATDSAVQIGTGVQVAGISTNFTQGPLVATGNNNDLG 91

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           I              Q    + +         K+    N  N  G  +            
Sbjct: 92  ISGRGYFVVQDATGNQFATRDGSFHFDTGGYLKNVQGYNVLNDMGQPVQVSGLKKTYDAT 151

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                         ++ S   DG   +              DL +          +    
Sbjct: 152 GVHDGYEPAPYSELASVSIGSDGTITAYATDGTSVLYGRTYDLADTSVPPAPDPVLDPAN 211

Query: 392 AGINTNVT-----------LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
             +N   +           L+  A N   +     + + ++ +        I        
Sbjct: 212 PAVNPTRSIGVMSVSDESRLMRQANNLYNFSATGSTVADNMEVPGVNGTGKIQTGVLEQS 271

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+L ++ S LI  ++S+   ++LI  +D +L+ ++   +
Sbjct: 272 NVDLTDQFSNLITTQRSFQAGSRLITVSDSVLEDIVNLKR 311



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 61/280 (21%), Gaps = 30/280 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           M L+       +     S+    I  NI N +   Y         +              
Sbjct: 1   MPLIGTLTSGVSAVRTFSKGLEVIGSNIANVNTTAYKSSSATYGDTFSNTLRAATATDSA 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V      + N     L A  +        + +  +++         N     
Sbjct: 61  VQIGTGVQVAGI---STNFTQGPLVATGNNNDLGISGRGYFVVQDA------TGNQFATR 111

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                     Y KN+    +   +    +         A  V      A       +   
Sbjct: 112 DGSFHFDTGGYLKNVQGYNVLNDMGQPVQVSGLKKTYDATGVHDGYEPAPYSELASV--- 168

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               S+ T+   A    +      +D  D                 +    +  V+  SD
Sbjct: 169 -SIGSDGTITAYATDGTSVLYGRTYDLADTSVPPAPDPVLDPANPAVNPTRSIGVMSVSD 227

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
            + L        NF    S    +   P       + +  
Sbjct: 228 ESRLMRQANNLYNFSATGSTVADNMEVPGVNGTGKIQTGV 267


>gi|153837069|ref|ZP_01989736.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ3810]
 gi|149749657|gb|EDM60402.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ3810]
          Length = 261

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 46/180 (25%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     I       ++     
Sbjct: 77  TQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +        I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGPADELIAGADGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +   I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTVISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   +  +    + Q F  ++              
Sbjct: 61  ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
               +   + E    N     L   +      
Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDNA 146


>gi|71906393|ref|YP_283980.1| flagellar basal body rod protein FlgG [Dechloromonas aromatica RCB]
 gi|71846014|gb|AAZ45510.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB]
          Length = 260

 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             A +      +K     +       F    + D      +  S       Q  ++  + 
Sbjct: 76  STAHIFTQGNLQKTDNTLDIAVQGNGFFQILLPDGTTGYTRDGSFQKDNQGQIVTSDGYP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       +V         +     +         +A       L    +N   +L
Sbjct: 136 LQPNITIPSNALSVSVGTDGTVSVTQSGSAATTQIGSIQLATFINPAGLQSAGQNL--FL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +   +         +++ Y  T  VN+ EEL  +I+ +++Y +++K++  +D M
Sbjct: 194 ETAASGTPTPNTPGSNGAGIVNQGYVETSNVNVAEELVTMIQTQRAYELNSKVVSTSDAM 253

Query: 472 LQTLLEG 478
           L  L + 
Sbjct: 254 LGRLTQL 260



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/211 (7%), Positives = 41/211 (19%), Gaps = 30/211 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIARTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60

Query: 47  --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    + +        F  +            +  
Sbjct: 61  QIPTGLQLGTGVRPVSTAHIFTQGNLQKTDNTLDIAVQGNGFFQIL------LPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI- 160
                 +   +          L   +   +  +  +  T           A       I 
Sbjct: 115 TRDGSFQKDNQGQIVTSDGYPLQPNITIPSNALSVSVGTDGTVSVTQSGSAATTQIGSIQ 174

Query: 161 --SNLRRFLSELTVVNDAIKFKTASKHDAHD 189
             + +     +    N  ++   +     + 
Sbjct: 175 LATFINPAGLQSAGQNLFLETAASGTPTPNT 205


>gi|330875986|gb|EGH10135.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967093|gb|EGH67353.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
                G   +      + ++       A       L     N   +LE   S +  +   
Sbjct: 150 TVGQDGTVSVTLAGATATSQVIGNIQTADFINPAGLQAIGGNL--YLETASSGAPQIGTP 207

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                    ++      V+  EEL  +I  +++Y +++K+I   D+MLQ L +
Sbjct: 208 GLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQ 260



 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/243 (6%), Positives = 49/243 (20%), Gaps = 30/243 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A+           +I  N+ N     +                         +
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T         N     L   ++ +      + F  + +             
Sbjct: 61  ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIEL 158
                   +        +   L   ++              T +  +    A +     +
Sbjct: 115 SRDGTFHLNSTGQIVTATGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATSQVIGNI 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           + ++         +  +      +S            +     + +   +         +
Sbjct: 175 QTADFINPAGLQAIGGNLYLETASSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNM 234

Query: 219 VYT 221
           + T
Sbjct: 235 ITT 237


>gi|307748585|gb|ADN91855.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 690

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/432 (7%), Positives = 90/432 (20%), Gaps = 43/432 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D    +
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTN 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+  ++ + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 I-------SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +       S L    S   +          +K    +  +         +    +    +
Sbjct: 173 VAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEK 232

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +   ++ + G  L     + I          T  +N + ++    +  Q         
Sbjct: 233 GVDAGSLFNAKGQGLNLRDGQGIWVSYA---DATYSTNKVGVNAFDPNLQQNQTAAFWGT 289

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                  D  +   + Q   +    I              +         +K+ D     
Sbjct: 290 ANQKVNLDITLNGVRIQNANIQS--IDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGID 347

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            +++          N + +    + + +    V +        N+  +        +   
Sbjct: 348 FVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNNTGNGQAGTPTINKNG 407

Query: 393 GINTNVTLLEYA 404
                 T + +A
Sbjct: 408 SSLWTATNITFA 419


>gi|144897832|emb|CAM74696.1| flagellar basal body distal rod protein; FlgG [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 2/173 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       ++   +   D    +  S  +    Q  ++  +    G         + 
Sbjct: 91  NTLDVAIQGKGYLQIRLPSGDTAYTRDGSFQLSEAGQIVTHEGYTVLPGITVPNNAVGIS 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             A    ++               +A       L     N   +LE   S          
Sbjct: 151 INASGQVMVKVDGSIDQTVVGQLQLANFANEAGLEARGDNL--FLETPASGGVLAGNPGS 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  + + +  T  VN+  E++ LI  +++Y +++K+I  +D+M+ T+ +  
Sbjct: 209 PGYGTLLQGFLETSNVNVVAEVTNLISAQRAYEMNSKVIQTSDEMMSTINQLK 261



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             N A             I  NI N +   Y +R    +                     
Sbjct: 3   SLNIAATGMLAQQTNVEVISNNIANMNTTAYTKRRPEFSDLLYQNLRRVGAASSDAGTIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V         +      + +  + +      + +  +           ++ 
Sbjct: 63  PTGVQLGLGVKTTAVYRITEQ---GSVQSTDNTLDVAIQGKGYLQI------RLPSGDTA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  + S            +   +      V  + N S + + K+    D+ +  ++
Sbjct: 114 YTRDGSFQLSEAGQIVTHEGYTVLPGITVPNNAVGISINASGQVMVKVDGSIDQTVVGQL 173

Query: 161 SNLR 164
               
Sbjct: 174 QLAN 177


>gi|117919774|ref|YP_868966.1| flagellar basal body rod protein FlgG [Shewanella sp. ANA-3]
 gi|117612106|gb|ABK47560.1| flagellar basal-body rod protein FlgG [Shewanella sp. ANA-3]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTPGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E+      ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVS 159


>gi|149184209|ref|ZP_01862527.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21]
 gi|148831529|gb|EDL49962.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21]
          Length = 243

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 2/184 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   ++V+          A +       +    +        +  + T+    Q  +  
Sbjct: 55  AVQSTSQVMTQGALSTTSNAFDLALDGDGYFQIEMPGGRIGYTRAGNFTLSAEGQLVTQQ 114

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
            +         +    +              ++         +A       L     N +
Sbjct: 115 GYSVQPAITVPEGATAIAVSPDGTVSATLPGEAGPAELGQIQIARFTNPSGLQAIGDNFL 174

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +E   S + +L    +    +I +    +  VN+ EEL  +I+ +++Y IS+K+I   
Sbjct: 175 --VETAASGAPELAPGGENGRGNIRQGMLESSNVNIVEELVEMIECQRAYEISSKMISAV 232

Query: 469 DKML 472
           D+ML
Sbjct: 233 DEML 236



 Score = 40.4 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 23/125 (18%), Gaps = 27/125 (21%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPEN---------------------VTVVTQRSEN 59
              I  N+ N     + R                                 T V  +S +
Sbjct: 1   MRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQRSSAETAYATGLNLGTGVAVQSTS 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
           + M    L   S+A         +  ++                      S E       
Sbjct: 61  QVMTQGALSTTSNAFDLALDGDGYFQIE------MPGGRIGYTRAGNFTLSAEGQLVTQQ 114

Query: 120 EDILG 124
              + 
Sbjct: 115 GYSVQ 119


>gi|170748107|ref|YP_001754367.1| flagellar basal body rod protein FlgG [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654629|gb|ACB23684.1| flagellar basal-body rod protein FlgG [Methylobacterium
           radiotolerans JCM 2831]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 58/178 (32%), Gaps = 2/178 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  +       +    + + +    +  S     + +  +   +  D   +  +  
Sbjct: 87  NNTTNPLDLAINGRGWFQVTMPNGEINYTRAGSFNKNADGRLVTAEGYSVDPAIIIPQNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +V        ++        +      +A    +  L         + E   S      
Sbjct: 147 IDVVINETGQVMVKVDGQQLPQTIGQLQLANFTNDAGLEPLGNGL--YRETAASGLPVTG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +   F  I + Y  T  V+   E++ LI  ++++ +++K+I   D+M  T+ +G++
Sbjct: 205 FAADPGFGKIQQGYLETSNVDPVREITNLISAQRAFEMNSKVIQAADEMAGTISKGIR 262



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/183 (6%), Positives = 35/183 (19%), Gaps = 28/183 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVT----- 54
               A    N        I  NI N +   +                P  V +       
Sbjct: 3   ALAIAATGMNAQQLNVEVIANNISNLNTTAFKAARAEFKDLIYQAERPAGVPIQAGESAI 62

Query: 55  -----------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                        +         L+  ++ +      + +  +                 
Sbjct: 63  PEGAMLGLGVRNTAIRNLHRQGPLNNTTNPLDLAINGRGWFQV------TMPNGEINYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + +          +   +I     +    N + + + K+      +   ++   
Sbjct: 117 AGSFNKNADGRLVTAEGYSVDPAIIIPQNAIDVVINETGQVMVKVDGQQLPQTIGQLQLA 176

Query: 164 RRF 166
              
Sbjct: 177 NFT 179


>gi|163758015|ref|ZP_02165103.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43]
 gi|162284304|gb|EDQ34587.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/239 (7%), Positives = 54/239 (22%), Gaps = 30/239 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51
               A    N        I  N+ N +   + R           V               
Sbjct: 3   ALAIAATGMNAQQLNLEVIANNVANINTTGFKRARAEFADLLYQVERNQGVPNASNQAIV 62

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   +         L   S+      + + +  ++           +    
Sbjct: 63  PEGAHIGLGVQTSAVRNLHIQGSLVGTSNKFDLALVGRGWFQIE------TPDGETNYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + +     +    +   ++   E      + + +   +I  +A+ +   +++  
Sbjct: 117 AGAFNTNADGELVTIDGYTVVPGIVFPDEASEVVISRTGQVFARIGNEAEMQELGQLTLA 176

Query: 164 R--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                     + ++  +  TAS        D       +   + G +         ++ 
Sbjct: 177 NFVNEAGLEPLGDNLFRETTASGPANVGVPDDPGFAHIQQGYLEGSNVDPIKEITDLIS 235



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 6/173 (3%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           +  +++    L      +          +     N         +     V      +  
Sbjct: 87  VGTSNKFDLALVGRGWFQIETPDGETNYTRAGAFNTNADGELVTIDGYTVVPGIVFPDEA 146

Query: 367 NLAGYPDLINHYC----DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +          +     ++  +      +A       L     N   + E   S   ++ 
Sbjct: 147 SEVVISRTGQVFARIGNEAEMQELGQLTLANFVNEAGLEPLGDNL--FRETTASGPANVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +     F HI + Y     V+  +E++ LI  +++Y +++K+I   D+M  T+
Sbjct: 205 VPDDPGFAHIQQGYLEGSNVDPIKEITDLISAQRAYEMNSKIIQAADEMASTV 257


>gi|316932790|ref|YP_004107772.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1]
 gi|315600504|gb|ADU43039.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1]
          Length = 616

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 7/211 (3%)

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G          +      + +  +      +FS    +      V    +      L N 
Sbjct: 413 GGTDTWNLFYQTNPNATGSDVAWVNVGTNFTFSSTGQMQPVVGQVTLPGVTVNGISLGNL 472

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +  +        N    +              +++    ++  Y +  N +    
Sbjct: 473 TMAIGTGGLTQFSDSNGNVQVNQLKQDGYAAGQLVSVSVSNQGRVVGSYSNGRNIDLAEV 532

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            VA  N    L                 +++           IS +   +   ++ +E +
Sbjct: 533 SVATFNGANFLKRI-------DGGAFETTNESGEALFGKGGSISGASLESSNTDIADEFT 585

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  +Q+Y+ + K+I   + M+Q LL  ++
Sbjct: 586 KLIVTQQAYSANTKVITTANTMVQDLLNVMR 616



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/453 (8%), Positives = 94/453 (20%), Gaps = 22/453 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQ 55
           M +      +       S    +I  NI N+    + R DT                 + 
Sbjct: 1   MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRIDTSFLDLIPQTGNNQQLAGSV 60

Query: 56  RSEN--KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY----NNSPTHYISKLRD 109
            +E+   N     + + + +       + F  +++  S  D+       +          
Sbjct: 61  NAESRLTNTLTGSVQSAAVSTYMAINGEGFFVVQKPASFTDNNPIFAGVNNYTRRGDFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID +        +  + ++        +   +I       S 
Sbjct: 121 DKNGYLVNGAGYYLQGVPIDPSTGNPAG--SVPQILKFQNDFLPSQATTKIDYRANLASY 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                       +      DF+     L    +     S +     +        T    
Sbjct: 179 PLTTKANKSVVGSELLRPADFVSNPRPLGTPAAPYTNTSILGSARTNFQTPAVAVTGATL 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                        +T +         G V +    +        +     D+        
Sbjct: 239 LKSASGTDSLQAGFTASDTITVKTTTGGVTTDKTVAFYDSSAGGSAGSAPDTAYVDLNGG 298

Query: 290 LDEMARVLIGS---------FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                   I            +    +   +  +                         +
Sbjct: 299 SISTLLAAIDGLTGNAAPNLSNVASGVVTINSGLANDIQLSSSSSTAWNALGFTGTITAL 358

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                +  + +  G         ++   A      N    S    +     A +    T 
Sbjct: 359 RGGGGTAGTGVVIGSDNQTFLDESIAGGALTAYDGNGAPVSLQFRWAKVASAAVGGTDTW 418

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
             + + +      + +  +     +      + 
Sbjct: 419 NLFYQTNPNATGSDVAWVNVGTNFTFSSTGQMQ 451


>gi|260774940|ref|ZP_05883841.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609195|gb|EEX35353.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+     ++  
Sbjct: 5   LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    +++    +V     ++    + +       F    + D +    +    T+  
Sbjct: 65  GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399
                ++ +       ++         +    ++        +   +             
Sbjct: 125 EGVVVTSGAGYPLEPEIAIPEDAISITIGTDGEVSVRVRGQQDNQVVGQIATVDFVNPGG 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   +L    S      +     F  I +S   T  VN+ EEL  +I+ ++ Y 
Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIEAQRVYE 242

Query: 460 ISNKLIMFTDKML 472
           +++K+I   DKM+
Sbjct: 243 MNSKVISAVDKMM 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       V+  + +        +  +
Sbjct: 121 TVNDEGVVVTSGAGYPLEPEIAIPEDAISITIGTDGEVSVRVRGQQDNQVVGQIATVDFV 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTE 229


>gi|28900124|ref|NP_799779.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260365774|ref|ZP_05778270.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           K5030]
 gi|260880696|ref|ZP_05893051.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AN-5034]
 gi|260897698|ref|ZP_05906194.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           Peru-466]
 gi|260899391|ref|ZP_05907786.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ4037]
 gi|28808407|dbj|BAC61612.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308086222|gb|EFO35917.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           Peru-466]
 gi|308092230|gb|EFO41925.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AN-5034]
 gi|308109302|gb|EFO46842.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ4037]
 gi|308115005|gb|EFO52545.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           K5030]
 gi|328470103|gb|EGF41014.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus
           10329]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 46/180 (25%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     I       ++     
Sbjct: 77  TQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +        I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGPADELIAGADGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 31/152 (20%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   +  +    + Q F  ++              
Sbjct: 61  ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
               +   + E    N     L   +      
Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDNA 146


>gi|260772276|ref|ZP_05881192.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP
           69.14]
 gi|260611415|gb|EEX36618.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP
           69.14]
          Length = 189

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 57/184 (30%), Gaps = 3/184 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +    +V      +    + +       F    + D +    +    T+       ++ +
Sbjct: 1   MVATQKVHTNGNVQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNAEGAIVTSGA 60

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDPVAGINTNVTLLEYARNSI 408
                  +          +    ++         N+      +        L    +N  
Sbjct: 61  GYLVQPEIVVPEDAISITVGNDGEVSVRLRGQQENQVLGQITIVDFINPGGLEPVGQNL- 119

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +L    S      +       +I +S   +  VN+ EEL  +I+ ++ Y +++K+I   
Sbjct: 120 -YLPTGASGDPQEGVPGLDGLGNIRQSMLESSNVNVTEELVNMIEAQRVYEMNSKVISSV 178

Query: 469 DKML 472
           D+M+
Sbjct: 179 DQMM 182


>gi|188592119|ref|YP_001796717.1| flagellar basal body rod protein flgg [Cupriavidus taiwanensis LMG
           19424]
 gi|170938493|emb|CAP63480.1| FlgG: Flagellar basal-body rod protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   A +   +   F    + D      +  S  +  N Q  ++  F+      
Sbjct: 82  TQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSFQVDQNGQLVTSSGFVIQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     S N       +A       L     N   +++ + S 
Sbjct: 142 IPANTLSMTIGRDGTVSVTQPGSSANVQVGQLQLATFMNPAGLESMGENL--YVQTDASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +  +        + ++Y     VN+ EEL  +I+ +++Y I++K +  +D+MLQ L +
Sbjct: 200 APNTTVPGLNGAGVVQQNYVEASNVNVVEELVSMIQTQRAYEINSKAVQASDQMLQRLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 30/156 (19%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQT 60

Query: 45  ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +            +A     L Q F  +            
Sbjct: 61  TLPSGMQLGTGVRPVATERIH---TQGNPQQTGNAKDVAILGQGFFQVA------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           +        +          S  ++   +   A  +
Sbjct: 112 TAYTRDGSFQVDQNGQLVTSSGFVIQPAITIPANTL 147


>gi|320179221|gb|EFW54179.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905]
          Length = 156

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 2/158 (1%)

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
             + D  +   +  S  +  N Q  +   F             ++         +     
Sbjct: 1   MMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQ 60

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +         +     +  L     N     E   S + +           + + Y  T 
Sbjct: 61  AAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSGAPNESTPGLNGAGLLYQGYVETS 118

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EEL  +I+V+++Y I++K +  TD+MLQ L + 
Sbjct: 119 NVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 156


>gi|254521223|ref|ZP_05133278.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14]
 gi|219718814|gb|EED37339.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14]
          Length = 257

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 2/211 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G   A  Q+   +      ++   A+       ++   A +       F    + D 
Sbjct: 47  QPGGSSSAQTQLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDG 106

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +   +  S  I  + +  +N  +    G    +   +V         +     + +   
Sbjct: 107 SSAYTRDGSFKINQDSELVTNSGYPVQPGIQIPEGAQSVTIGTDGTISVKMADGAASVEV 166

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   +LE   S               + +       VN+ E
Sbjct: 167 GALTLTDFVNPAGLQARGENL--FLETTASGPAQNGNPGLNGLGTVVQGALEGSNVNVVE 224

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           EL  +I+ +++Y ++ K I  TD ML  L  
Sbjct: 225 ELVSMIETQRAYEMNAKAISTTDSMLGYLNN 255



 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 15/133 (11%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVTQRSE 58
              A+   +    + + +  N+ N +   + +                  + +  TQ   
Sbjct: 1   MWIAKTGLDAQQMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQTQLPT 60

Query: 59  NKNMFDKVLHAHSS----AIGQQRLLQSFEALKEMMSADD---HYNNSPTHYISKLRDSL 111
              +   V    ++      GQQ+  ++ + +       +      +S        + + 
Sbjct: 61  GLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSFKINQ 120

Query: 112 ESYSKNLSEDILG 124
           +S     S   + 
Sbjct: 121 DSELVTNSGYPVQ 133


>gi|153831580|ref|ZP_01984247.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01]
 gi|156976143|ref|YP_001447049.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116]
 gi|269960118|ref|ZP_06174494.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi
           1DA3]
 gi|148872090|gb|EDL70907.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01]
 gi|156527737|gb|ABU72822.1| hypothetical protein VIBHAR_04914 [Vibrio harveyi ATCC BAA-1116]
 gi|269835089|gb|EEZ89172.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi
           1DA3]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     I       ++     
Sbjct: 77  TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNAISFSVGVDGTVTTTSADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +  +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGPADELIAGEDGAGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/180 (7%), Positives = 38/180 (21%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   +  +    + Q F  ++              
Sbjct: 61  ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   + E    N     L   +      +  +             D   +   +I+
Sbjct: 115 TRNGQFHINSEGLMVNSQGLPLEPQIQIPDNAISFSVGVDGTVTTTSADDPTPQQLGQIT 174


>gi|260574401|ref|ZP_05842405.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2]
 gi|259023297|gb|EEW26589.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 4/209 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +  +D  +     QL    R    S          +     L I              
Sbjct: 52  GTVSAQDGTILPTGVQLGLGVRPAAVSMVMAQGTLAQTGGDLDLAIEGQGYLEVTLPSGA 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            + T     +   +   +   G      +    +        +    ++  + +   + G
Sbjct: 112 SAYTRDGALKRTGDGLIVTSEGHQVAPGITIPADARSLSINADGEVYAYFVDQVQPSLLG 171

Query: 394 INTNVTLLEY----ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
               V         A  S  +LE   S +  +    Q     + + Y     V+   E++
Sbjct: 172 QLNLVGFTNEKGLEAIGSNLFLESPASGAAIVGTPGQDGLGTLRQGYLEESSVDAVREVT 231

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            LIK ++ Y ++ K+I   D+ML    + 
Sbjct: 232 ELIKAQRGYELNAKVITAADQMLSATTQL 260



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/151 (8%), Positives = 28/151 (18%), Gaps = 28/151 (18%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------- 45
                A +       +   +  N+ N     Y  R                         
Sbjct: 2   NALQIAASGMAAQQMRVDVVSNNLANMSTTGYNARRADFADLHYQQLARPGTVSAQDGTI 61

Query: 46  SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            P  V +         +  M    L      +      Q +  +            S   
Sbjct: 62  LPTGVQLGLGVRPAAVSMVMAQGTLAQTGGDLDLAIEGQGYLEV------TLPSGASAYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
               L+ + +          +   +   A+ 
Sbjct: 116 RDGALKRTGDGLIVTSEGHQVAPGITIPADA 146


>gi|254477684|ref|ZP_05091070.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11]
 gi|214031927|gb|EEB72762.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 2/181 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            ++  L      +     +       ++   +    +   +  S          ++  F 
Sbjct: 76  AISIHLAQGALTQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGSLKRSAEGLIVTSDGFT 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       NV   A           +  +      +AG +    L     N   ++
Sbjct: 136 VSPDITIPADARNVSINADGEVYAYFDETAEGQLMGQLTLAGFSNPKGLEALGSNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +  +    +     + + Y     V+   E++ LI+ ++ Y ++ K+I   D+M
Sbjct: 194 ETEASGAATVASPGENGLGTLRQGYLEASSVDAVREVTELIEAQRGYEMNAKVISAVDQM 253

Query: 472 L 472
           +
Sbjct: 254 M 254



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 31/150 (20%), Gaps = 28/150 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A         +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGTVL 62

Query: 47  PENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V      +    ++    L    + +      + +  +            S    
Sbjct: 63  PTGVQVGLGVRASAISIHLAQGALTQTGNDLDVAIDGKGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              L+ S E          +   +   A+ 
Sbjct: 117 DGSLKRSAEGLIVTSDGFTVSPDITIPADA 146


>gi|237653581|ref|YP_002889895.1| flagellar basal body rod protein FlgG [Thauera sp. MZ1T]
 gi|237624828|gb|ACR01518.1| flagellar basal-body rod protein FlgG [Thauera sp. MZ1T]
          Length = 260

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 68/250 (27%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +  + + +++      +N       +        + +   ++  Q + S       
Sbjct: 11  GLDAQQTSLDVISNNLANVSTNGFKRQRAIFEDLLYQTIRQPGAQSTQQTQISSGLQIGT 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +  +A   I +        G+ +          +   D            ++ Q     
Sbjct: 71  GVKPVATERIFTQGTLQQTGGSLDVAVQGNGFFQVAMPDGTTAYTRDGAFQLDSQGNVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           +               +    G    ++              +       +    A    
Sbjct: 131 ASGYTLADNINIPADALSITIGKDGTVSVLQAGQTAPVEIGAIQLATFINSGGLQAAGEN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + E   S               +++ Y     VN+ EEL  +I  +++Y ++++ I  +
Sbjct: 191 LFYETASSGVATPTQPGTNGAGVLNQGYVEVSNVNVAEELVSMIVTQRAYELNSRAISTS 250

Query: 469 DKMLQTLLEG 478
           D+ML  L + 
Sbjct: 251 DQMLGRLTQL 260



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/262 (8%), Positives = 54/262 (20%), Gaps = 34/262 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWTARTGLDAQQTSLDVISNNLANVSTNGFKRQRAIFEDLLYQTIRQPGAQSTQQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L     ++        F  +            
Sbjct: 61  QISSGLQIGTGVKPVATERI---FTQGTLQQTGGSLDVAVQGNGFFQVA------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +   +      S   L   +   A+ +          V  ++A     +E+
Sbjct: 112 TAYTRDGAFQLDSQGNVVTASGYTLADNINIPADAL-SITIGKDGTVSVLQAGQTAPVEI 170

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               L  F++   +          +         Q       +     +     N  + +
Sbjct: 171 GAIQLATFINSGGLQAAGENLFYETASSGVATPTQPGTNGAGVLNQGYVEVSNVNVAEEL 230

Query: 219 VYTSDGTTLFETVPRDINFEKM 240
           V        +E   R I+    
Sbjct: 231 VSMIVTQRAYELNSRAISTSDQ 252


>gi|150395485|ref|YP_001325952.1| flagellar basal body rod protein FlgG [Sinorhizobium medicae
           WSM419]
 gi|150027000|gb|ABR59117.1| flagellar basal-body rod protein FlgG [Sinorhizobium medicae
           WSM419]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A    N        I  NI N +   Y R     +                     
Sbjct: 3   ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    +      + + +  ++           + 
Sbjct: 63  PEGAIIGLGVQTSAVR---NLHIQGSLVNTGNDYDLALVGRGWFQIE------TPDGETV 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +       +    +   V    +     F +S + + +I  D + +   ++
Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TVAN 177



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 2/163 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +   V   +      D +    +  +       Q  +   +    G    +    +   
Sbjct: 93  YDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQLVTIDGYTVVPGVTVPQDATEIVFT 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           +    ++    D+  +      VA       L     N   + +   S    +   +   
Sbjct: 153 SSGQVMVRIGNDTELQEIGQLTVANFVNEAGLEPMGENL--FRQTPASGDAIVGTPADPG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           F  I ++Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 211 FAQIKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEM 253


>gi|146293688|ref|YP_001184112.1| flagellar basal body rod protein FlgG [Shewanella putrefaciens
           CN-32]
 gi|145565378|gb|ABP76313.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens
           CN-32]
 gi|319427087|gb|ADV55161.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens 200]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSF 382
            D      +    T+    Q  +  S      +++         ++   ++ +     + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/168 (8%), Positives = 35/168 (20%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                          + +  I   E+      ++  EV    A A + 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAEN 168


>gi|116694221|ref|YP_728432.1| flagellar basal body rod protein FlgG [Ralstonia eutropha H16]
 gi|113528720|emb|CAJ95067.1| flagellar basal body rod protein [Ralstonia eutropha H16]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 2/178 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   A +   +   F    + D      +  S  +  N Q  ++  F+      
Sbjct: 82  TQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSFQVDQNGQLVTSSGFVIQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     S N       +A       L     N   +++ + S 
Sbjct: 142 IPANTLSMTIARDGTVSVTQPGSSANVQVGQLQLATFMNPAGLESMGENL--YVQTDASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +  +        + ++Y     VN+ EEL  +I+ +++Y I++K +  +D+MLQ L
Sbjct: 200 APNTTVPGLNGAGVVQQNYVEASNVNVVEELVSMIQTQRAYEINSKAVQASDQMLQRL 257



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 30/156 (19%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQT 60

Query: 45  ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +            +A     L Q F  +            
Sbjct: 61  TLPSGMQLGTGVRPVATERIH---TQGNPQQTGNAKDVAILGQGFFQVA------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
           +        +          S  ++   +   A  +
Sbjct: 112 TAYTRDGSFQVDQNGQLVTSSGFVIQPAITIPANTL 147


>gi|90577346|ref|ZP_01233157.1| putative flagellar basal-body rod protein [Vibrio angustum S14]
 gi|90440432|gb|EAS65612.1| putative flagellar basal-body rod protein [Vibrio angustum S14]
          Length = 261

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYAR 405
           N   L     +      N  ++     +      D   +      +A       L     
Sbjct: 130 NGQGLPLQPQIQIPEEANTISIGVDGIVTATLAGDPQPQELGQITLAKFINPAGLEAIGG 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   + E   S      +        + +       V + EE+  +I  +++Y ++ K++
Sbjct: 190 NL--YKETQASGQPQEMIAGADGAGSLKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVV 247

Query: 466 MFTDKML 472
              D ML
Sbjct: 248 SAADDML 254



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/154 (7%), Positives = 30/154 (19%), Gaps = 27/154 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                      +    +   F  ++              
Sbjct: 61  QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIEN------SDGEVMF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
               +   + E    N     L   +    E   
Sbjct: 115 SRNGQFHVNSEGLMVNGQGLPLQPQIQIPEEANT 148


>gi|114046840|ref|YP_737390.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-7]
 gi|113888282|gb|ABI42333.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-7]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTPGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      ++       L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E+      ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVS 159


>gi|323495375|ref|ZP_08100452.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG
           20546]
 gi|323310298|gb|EGA63485.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG
           20546]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+     ++  
Sbjct: 5   LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    +++    +V     ++    + +       F    + D +    +    T+  
Sbjct: 65  GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQFTVND 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399
                ++ +       ++         +    ++        +   +             
Sbjct: 125 EGVIVTSGAGYALEPEIAIPEDAISVTIGTDGEVSVRVRGQQDNQVVGQIATVDFVNPGG 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   +L    S      +     F  + +S   T  VN+ EEL  +I+ ++ Y 
Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGFDGFGEVRQSMLETSNVNVTEELVNMIEAQRVYE 242

Query: 460 ISNKLIMFTDKML 472
           +++K+I   DKM+
Sbjct: 243 MNSKVISAVDKMM 255



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       V+  + +        +  +
Sbjct: 121 TVNDEGVIVTSGAGYALEPEIAIPEDAISVTIGTDGEVSVRVRGQQDNQVVGQIATVDFV 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGEVRQSMLETSNVNVTE 229


>gi|313894975|ref|ZP_07828534.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|320530443|ref|ZP_08031501.1| flagellar basal-body rod protein FlgG [Selenomonas artemidis F0399]
 gi|312976428|gb|EFR41884.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|320137276|gb|EFW29200.1| flagellar basal-body rod protein FlgG [Selenomonas artemidis F0399]
          Length = 264

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 56/213 (26%), Gaps = 12/213 (5%)

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL---------DN 328
            R+     +   L       + +                  I    +             
Sbjct: 54  ARNGTDSQYPTALQIGLGTRVAATQRIFTQGALQTTDNPTDIGIQGEGFFRVTLPDGSTA 113

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNKNFI 387
               G  +         ++   + DG  + +        ++G   +       +  +   
Sbjct: 114 YTRDGTWKLDSNRRMVTTDGYLIADGIQIGENAPSESITISGDGRVSYREAGQTQQQEAG 173

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A       L    +N   ++  + S               +++       V + EE
Sbjct: 174 QITLARFVNPAGLTSIGKNL--FVVSDASGEAIESTPGLDGTGTLTQGTLEMSNVQIVEE 231

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  +I  +++Y  ++K I  +D ML+      +
Sbjct: 232 MVEMIISQRAYESNSKAITTSDSMLEIANTLKR 264



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/175 (7%), Positives = 33/175 (18%), Gaps = 14/175 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           ++     A +           +  NI N +     +                        
Sbjct: 1   MMRALWSAASGMKAQQAHMDIVAHNIANVNTHGGKKVRAEFQDLVYQTLREAGARNGTDS 60

Query: 59  ----------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                        +          A+             E        + S  +      
Sbjct: 61  QYPTALQIGLGTRVAATQRIFTQGALQTTDNPTDIGIQGEGFFRVTLPDGSTAYTRDGTW 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               +     ++  L    I   E       T + + +    +A +  + E   +
Sbjct: 121 KLDSNRRMVTTDGYLIADGIQIGENAPSESITISGDGRVSYREAGQTQQQEAGQI 175


>gi|289612840|emb|CBI60006.1| unnamed protein product [Sordaria macrospora]
          Length = 135

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 9/129 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +  + + A  +   A  +      NI N     Y RR              T  + ++
Sbjct: 1   MGMTGLVDSATAVMRMAQARLDVAAHNIANVATPGYKRRI---------GFADTVAARSE 51

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 + A  +++ +   +       +          +      + R   +        
Sbjct: 52  VALATRIDAAQASLTETGNVLDMAISGDGYFRVRDGERTLYTRQGQFRRDADGALVTPQG 111

Query: 121 DILGKTVID 129
            +L ++   
Sbjct: 112 YVLQQSGGG 120


>gi|225686012|ref|YP_002733984.1| flagellar basal body rod protein FlgG [Brucella melitensis ATCC
           23457]
 gi|256262865|ref|ZP_05465397.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642117|gb|ACO02030.1| flagellar basal-body rod protein FlgG [Brucella melitensis ATCC
           23457]
 gi|263092700|gb|EEZ16909.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410335|gb|ADZ67399.1| flagellar basal body rod protein FlgG [Brucella melitensis M28]
 gi|326553627|gb|ADZ88266.1| flagellar basal body rod protein FlgG [Brucella melitensis M5-90]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     T                     
Sbjct: 3   ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R           +   +        + +  ++           + 
Sbjct: 63  PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     L  + +   +    + +      + +   K++   ++    ++
Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173

Query: 161 SNLRRF 166
           +     
Sbjct: 174 TLANFT 179



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + I     +     +       +        +    +  +     
Sbjct: 65  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  +      +           V                   +     +A       L
Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S    + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 185 EPLGGNL--YRETEASGGALVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 243 NSKVIQAADEM 253


>gi|160876201|ref|YP_001555517.1| flagellar basal body rod protein FlgG [Shewanella baltica OS195]
 gi|160861723|gb|ABX50257.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS195]
 gi|315268391|gb|ADT95244.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS678]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGVSASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYLLQPAITIPDNATSITVSAEGEVSVKTPGTAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLTMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 33/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53
           +      ++   +      A I  N+ NA    Y +   +              V+    
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60

Query: 54  ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          L +  I   +       ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYLLQPAITIPDNATSITVSAEGEVS 159


>gi|262404538|ref|ZP_06081093.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586]
 gi|262349570|gb|EEY98708.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 58/189 (30%), Gaps = 3/189 (1%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +++    +V     ++    + +       F    + D +    +    T+      
Sbjct: 69  GAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403
            ++ S  R    +          +    ++        +                 L   
Sbjct: 129 VTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPI 188

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +N   +L    S      +        + +S   T  VN+ EEL  +I+ ++ Y +++K
Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246

Query: 464 LIMFTDKML 472
           +I   DKML
Sbjct: 247 VISAVDKML 255



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/226 (7%), Positives = 45/226 (19%), Gaps = 20/226 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57
               ++   +      A+I  N+ NA    + +   +                       
Sbjct: 4   ALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63

Query: 58  ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110
                     +                         +        + +       +    
Sbjct: 64  SGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123

Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            E            +  I   E+     + N    +  V+  + +        +  +   
Sbjct: 124 DEGAIVTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183

Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 184 GLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTE 229


>gi|219684180|ref|ZP_03539124.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr]
 gi|219672169|gb|EED29222.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr]
          Length = 265

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L     N   + E   S      +        + +       V++
Sbjct: 171 ELGQIEISRFVNPAGLSAIGSNL--FKETAGSGQEITGIPGSEGMGILRQGILEMSNVSI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       +
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIQTSDNMLGIANNLKR 264



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/174 (5%), Positives = 33/174 (18%), Gaps = 27/174 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +        +  +      + + +           F  +               
Sbjct: 61  LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKIL------MPDGTYAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 +              +   +    E +  +   S + +  ++ D   E
Sbjct: 115 TRDGSFKIDSNRELVTSQGYKVLPNIFFPEEYIQNSITISEQGIVSVKTDNSNE 168


>gi|120598234|ref|YP_962808.1| flagellar basal body rod protein FlgG [Shewanella sp. W3-18-1]
 gi|120558327|gb|ABM24254.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1]
          Length = 262

 Score = 68.9 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSF 382
            D      +    T+    Q  +  S      +++         ++   ++ +     + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/168 (8%), Positives = 35/168 (20%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                          + +  I   E+      ++  EV    A A + 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPEDATSITVSAEGEVSVKTAGAAEN 168


>gi|332162899|ref|YP_004299476.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604254|emb|CBY25752.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667129|gb|ADZ43773.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863349|emb|CBX73472.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica
           W22703]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 2/114 (1%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                ++              D+ +       +        L     N   + E   S +
Sbjct: 143 PAGAKDLAIGKDGTVTARLGGDAESAELGQITLVNFVNPAGLEAVGGNM--YKETVASGA 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
               +  +  F  +         V + EE+  +I V+++Y ++ K++   D ML
Sbjct: 201 AVEGVAGEEAFGQLEHGSLEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/186 (9%), Positives = 40/186 (21%), Gaps = 33/186 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNPALWVSKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGAPLDQNN 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +   K      +      +      Q F  ++           
Sbjct: 61  ATPNGIQFGSGVKVVGTQ---KQFTVGNIKVTKGDLDVAIAGQGFFQVE------TSDGG 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                   L  + +    N     L   +   A               ++  DA+     
Sbjct: 112 LAYTRAGNLSINADGVLTNAQGLPLIPQIELPAGAKDLAIGKDGTVTARLGGDAESAELG 171

Query: 159 EISNLR 164
           +I+ + 
Sbjct: 172 QITLVN 177


>gi|292489131|ref|YP_003532018.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430]
 gi|292900250|ref|YP_003539619.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291200098|emb|CBJ47224.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291554565|emb|CBA22177.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430]
 gi|312173289|emb|CBX81544.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC
           BAA-2158]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 2/170 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F    + D      +  S ++  N Q  +                  +   
Sbjct: 93  YDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVG 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                       +  +      +A    +  L     N     E   S + +        
Sbjct: 153 EDGIVTATVPGQAAPQQIGQLTLANFINDAGLESLGGNLYA--ETQASGAPNEATPGMDG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +   Y  T  VN+ EEL  +I+V+++Y I++K +  +D+MLQ L + 
Sbjct: 211 AGRLKHQYIETSNVNVAEELVTMIQVQRAYEINSKAVSASDQMLQRLAQL 260



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/245 (7%), Positives = 52/245 (21%), Gaps = 37/245 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+            I  N+ N  +  + R+  +                    
Sbjct: 1   MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V  +  +       L             + F  ++           
Sbjct: 61  TLPTGMQLGTGVATVATQRMH---TQGSLTQTGRDYDMAIQGKGFFQVQ------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +          +          + +   +   A+               +   A  +   
Sbjct: 112 TAYTRDGSFSLNENGQMVTAEGNPVQPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIG 171

Query: 159 EISNLRRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           +++         L  L     A    + + ++A   +D    L  +  E   ++      
Sbjct: 172 QLTLANFINDAGLESLGGNLYAETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELV 231

Query: 215 NDMVV 219
             + V
Sbjct: 232 TMIQV 236


>gi|32265682|ref|NP_859714.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449]
 gi|32261730|gb|AAP76780.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449]
          Length = 745

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/364 (8%), Positives = 93/364 (25%), Gaps = 18/364 (4%)

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
             + +  +              KI    ++     I+            N    +   + 
Sbjct: 392 GALPEWNDNTTYLEGDIVASEGKIYRRINQAGNNPINEGNWEELGNAESNLPSNYAKDTT 451

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
           +   D ++    L +KI +       + N     +Y     + F  +P        N   
Sbjct: 452 YQVGDIVNYDGRLYRKIVDSGSSDPKLDNVGWQQIYGDSFHSDFIQMPSYQT----NVEI 507

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                    +       + G+       +   ++  +V       +     V+     + 
Sbjct: 508 YDESGKKFLVQSRYYMLSSGNPESSPPTREQWEVHSAVFDQHGEIMVSPDYVVHTIEFDA 567

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           D                   ++        S  +        + + L        +    
Sbjct: 568 DGNPVAEPVELAFGDKSVQYNIAGTKDSKSSNFVYR------DSAILGKDQDGRTEGHLR 621

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS-------IGWLEKNRSD 417
              +     +   + +   +      +A    +  L +   N        +       S 
Sbjct: 622 DVRIDKDGIIFLAFDNGAYEPMGRIGIAAFVNDQGLRKVGGNLFEMTEMVVNGNANTISG 681

Query: 418 SHDLHMKSQVV-FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              L  +   + +  +   +  T  V++   L+ LI +++ Y+++ +     D +++  L
Sbjct: 682 RPILGWEGLNLKYGSVLYKHLETSNVDVGNALTELIVMQRGYSMNARAFTTGDDLIKEAL 741

Query: 477 EGVK 480
              +
Sbjct: 742 NLKR 745



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 60/249 (24%), Gaps = 33/249 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +      + +          SI  NI N +   Y            N             
Sbjct: 1   MNGTLVNSYSGIKTHQFGLDSISNNIANVNTIGYRENIPQFETLFANNMDFLNADSPINN 60

Query: 50  --VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD--------DHYNNS 99
                 T+ S   +       A           + +  + E  S          +    +
Sbjct: 61  DMNYGATKSSNAISTRSGSYKATDGEFNVAYEGKGWFIVGEQKSGSFEIKDDGYEKKQKN 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                       E Y  N S   +    +   E+       ++ + ++   +A    +L 
Sbjct: 121 YFTRDGSFLRDGEGYIVNTSGYYMYGVDLGKIED----GIYTSNKDEEKDFEALSSGKLT 176

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHD------FLDQRDVLLQKISEIIGISTIVRN 213
             ++ + L    V+   +   T    + +       F D+      +      ++    +
Sbjct: 177 PMHIPQNLYYRPVLTTKLDVSTNLNKNENAISAVAFFKDKEGEFDVERFMNTDVNAFAAD 236

Query: 214 NNDMVVYTS 222
           +  +   T 
Sbjct: 237 DMPLNASTY 245


>gi|261253612|ref|ZP_05946185.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP
           102891]
 gi|260937003|gb|EEX92992.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP
           102891]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+     ++  
Sbjct: 5   LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    +++    +V     ++    + +       F    + D +    +    T+  
Sbjct: 65  GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399
                ++ +       ++         +    ++        +   +             
Sbjct: 125 EGVIVTSGAGYALEPEIAIPEDAQSITIGTDGEVSVRIRGQQDNQVVGQIATVDFVNPGG 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   ++    S      +     F  + +S   T  VN+ EEL  +I+ ++ Y 
Sbjct: 185 LEPIGQNL--YMATGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIEAQRVYE 242

Query: 460 ISNKLIMFTDKML 472
           +++K+I   DKM+
Sbjct: 243 MNSKVISAVDKMM 255



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 46/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+       +       ++  + +        +  +
Sbjct: 121 TVNDEGVIVTSGAGYALEPEIAIPEDAQSITIGTDGEVSVRIRGQQDNQVVGQIATVDFV 180

Query: 164 RRFLSELTVVNDAIKF-KTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYMATGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTE 229


>gi|268680906|ref|YP_003305337.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618937|gb|ACZ13302.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 567

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/448 (7%), Positives = 102/448 (22%), Gaps = 17/448 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +      +    +      I  NI N +   +       +    ++ V T  S +  +
Sbjct: 1   MNSSLYNGVSGIKTSQFYIDVIGNNISNVNTNGFKGSTPEVSSLFSSILVGTYNSYSNGV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH-------YNNSPTHYISKLRDSLESYS 115
                  +++    Q +L++ +   ++    +          N+            E   
Sbjct: 61  GMGAQSFNTALDMSQGILENTDNTFDLALGSEGWFGVQGADGNTYYTRAGSFSLDAEGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-ELEISNLRRFLSELTVVN 174
            +   + L  T+ +N      + +T A+  Q         +    I+ L           
Sbjct: 121 VDGDGNYLLATLGNNIATTTLDADTLAKFGQYYNNGTASSVTPYAITELNDVGLGTIGSQ 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIG-ISTIVRNNNDMVVYTSDGTTLFETVPR 233
             +       +      +         +     ++  + + +      +D T+   T+  
Sbjct: 181 GIVNLPKTLYYPPVASSEASYSANLDPTITTDAVTLDLNSADYPSSVLADTTSKTLTLNG 240

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            I            +   + +      +   +A     ++  +   D       +     
Sbjct: 241 TITNTITTQTPQKGDIVDVTLKDASGKTLLLTATLDENLEWSINDYDVSAYDLSSAFTLT 300

Query: 294 ARVL-------IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
           +  L                I  + +          +    +      +     +     
Sbjct: 301 SAKLQTEQEVATQENFSTSIIGPDGDKDILDMTFTKVIPQTSTETTWNAVVNIYSFYETY 360

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + S   D          N               +              N   TL      
Sbjct: 361 DTSKTYDTTQYYIDKTANKVYEIVDTQTGALTFNGNGSLASNTIPTINNGGTTLTLNLGT 420

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISE 434
             G+     S+++     +      +  
Sbjct: 421 VGGYDGM-VSNANIDKANASSSNGTLEG 447



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/364 (8%), Positives = 92/364 (25%), Gaps = 8/364 (2%)

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 L     D    V+ +  +    +     +       +  ++     +       
Sbjct: 210 TTDAVTLDLNSADYPSSVLADTTSKTLTLNGTITNTITTQTPQKGDIVDVTLKDASGKTL 269

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
           +   T  ++      D         S     S  ++   ++    +  T++         
Sbjct: 270 LLTATLDENLEWSINDYDVSAYDLSSAFTLTSAKLQTEQEVATQENFSTSIIGPDGDKDI 329

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
            +   +  +   S     + VV   +        K              + ++       
Sbjct: 330 LDMTFTKVIPQTSTETTWNAVVNIYSFYETYDTSK-------TYDTTQYYIDKTANKVYE 382

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           ++ + +      GN                   L  G            +         +
Sbjct: 383 IVDTQTGALTFNGNGSLASNTIPTINNGGTTLTLNLGTVGGYDGMVSNANIDKANASSSN 442

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
            + +      ++    ++I  + +  + +     V     +  L+  + N       +  
Sbjct: 443 GTLEGFLTGYDVDTNGNVIASFSNGKSSSVAKIAVYHFQNDQGLMAESSNLFSESSNSGK 502

Query: 417 DSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
                    +      +         V+L   L+ LI V+++++ S K I  +D++L+  
Sbjct: 503 AFFYADESGESFLGSKVYSHKLEGSNVSLATALTELIIVQKAFDASAKSITTSDELLKNA 562

Query: 476 LEGV 479
           +   
Sbjct: 563 INMK 566


>gi|221640825|ref|YP_002527087.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides
           KD131]
 gi|332559802|ref|ZP_08414124.1| FlgG2 [Rhodobacter sphaeroides WS8N]
 gi|221161606|gb|ACM02586.1| Flagellar basal-body rod protein FlgG precursor [Rhodobacter
           sphaeroides KD131]
 gi|332277514|gb|EGJ22829.1| FlgG2 [Rhodobacter sphaeroides WS8N]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      + G      L     N   +LE   S      +  +  F  + + Y     
Sbjct: 166 QPQLLGQISLTGFTNEKGLEAIGSNL--FLETAASGPPIAGVAGEDGFGTLRQGYLEESS 223

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           V+  +E++ LIK ++ Y ++ K+I   D+ML
Sbjct: 224 VDSVQEITELIKAQRGYELNAKVITAADQML 254



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 28/178 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGRML 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L      +      + +  +            S    
Sbjct: 63  PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              L+ S E    +     +   +    +    + + +             ++  +IS
Sbjct: 117 DGALKRSAEGLIVSSDGHEVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQIS 174


>gi|170725957|ref|YP_001759983.1| flagellar basal body rod protein FlgG [Shewanella woodyi ATCC
           51908]
 gi|169811304|gb|ACA85888.1| flagellar basal-body rod protein FlgG [Shewanella woodyi ATCC
           51908]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 66/210 (31%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    +V           + +       F    +
Sbjct: 48  TVNQAGGVSASNTKLPNGLNVGAGTKVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSF 382
            D      +    T+    Q  ++ S      +++         ++   ++ +     + 
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTSGSGYVVQPAITIPENATGITVSAEGEVSVKTAGTAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           ++      ++       L    +N         S +      S      + +    T  V
Sbjct: 168 SQVVGQLTMSDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAVRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 33/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVV-- 53
           +      ++   +      + I  N+ NA    Y +   +              V+    
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60

Query: 54  ------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNVGAGTKVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   E       ++  EV 
Sbjct: 121 TLDDTGQIVTSGSGYVVQPAITIPENATGITVSAEGEVS 159


>gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein FlgG [Herbaspirillum seropedicae
           SmR1]
 gi|300074139|gb|ADJ63538.1| flagellar basal-body rod FlgG protein [Herbaspirillum seropedicae
           SmR1]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R+       +     +       F    + D      +  +       Q  ++  + 
Sbjct: 76  ATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAFQTDSQGQLVTSSGYT 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         I     +         VA       L     N   ++
Sbjct: 136 LQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFINPAGLESRGENL--YM 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + + +         + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+M
Sbjct: 194 ETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAYEINSKAITTSDQM 253

Query: 472 LQTL 475
           L  L
Sbjct: 254 LAKL 257



 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/245 (6%), Positives = 47/245 (19%), Gaps = 35/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     ++   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             ++  ++          F  +            
Sbjct: 61  QLPSGLQIGTGVRPVATERI---FTQGNVNQTNNDKDLAIQGNGFFQIL------LPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE--VVQNFNTSAREVQKIRADADKEI 156
           +        +   +      S   L   +        +    +     +Q       +  
Sbjct: 112 TAYTRDGAFQTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            ++++         +   +      AS     +              +   +  V     
Sbjct: 172 TIQVATFINPAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELV 231

Query: 217 MVVYT 221
            ++ T
Sbjct: 232 NMIQT 236


>gi|292487941|ref|YP_003530816.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430]
 gi|292899160|ref|YP_003538529.1| flagellar basal-body rod protein FlgG [Erwinia amylovora ATCC
           49946]
 gi|291199008|emb|CBJ46119.1| flagellar basal-body rod protein FlgG (distal rod protein) [Erwinia
           amylovora ATCC 49946]
 gi|291553363|emb|CBA20408.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430]
 gi|312172062|emb|CBX80319.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC
           BAA-2158]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F +  + D      +  S     N Q  +N  F      V      ++    
Sbjct: 94  DVAINGQGFFSVQMPDGTTAYTRDGSFQTDQNGQLVTNAGFPVQPAIVIPANSLSMTVSR 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         ++    +  L     N   + E   S   +         
Sbjct: 154 DGVVSVTQQGQANPVQVGQLTLSTFMNDAGLSSMGENL--YQETQASGVPNESNPGNNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EEL  +I+ +++Y I++K I  +D+ML  L + 
Sbjct: 212 GTLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAISTSDQMLAKLTQI 260



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 21/170 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +   S       +     
Sbjct: 61  TLPSGLQIGTGTR---PVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              +          +   +   ++  A  +    +         +  A+ 
Sbjct: 118 GSFQTDQNGQLVTNAGFPVQPAIVIPANSLSMTVSRDGVVSVTQQGQANP 167


>gi|322421726|ref|YP_004200949.1| flagellar hook-basal body protein [Geobacter sp. M18]
 gi|320128113|gb|ADW15673.1| flagellar hook-basal body protein [Geobacter sp. M18]
          Length = 294

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 60/221 (27%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
           S+     V    I+                  + +  L  + + +        N  G  +
Sbjct: 74  STQSSENVTDLAIQGNTFFALKPSTAASPVATQNSAFLSRAGAFQVDNTLTLVNPDGYQV 133

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
            D   +    L  G + T         + S L    +                       
Sbjct: 134 LDTQGNPIKFLNSGAAPTTDFGKIISVDNSGLITYLATDGITQNYYNTSGAVGVAATVAN 193

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +       +       L      +      + +       K   V   I  +    
Sbjct: 194 SATVQRLAVVTASDPTALTKLGGSLYQATTAAGVSGAAFSLAANKPNGVSEKILSNTLEQ 253

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++  E   +I  +++Y+ ++K I  TD+M Q +L+ ++
Sbjct: 254 SNVDMASEFVKMIVTQRAYSANSKTITTTDQMTQEVLQLIR 294



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 48/214 (22%), Gaps = 10/214 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52
           MS+ +             +    I  NI N +   +    T+ +                
Sbjct: 1   MSVTSALFTGVTGLLQNGEAMNVIGNNISNVNTIGFKGARTLFSDMLSQNVGNDSQIGKG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDS 110
           V  +            +  +         +F AL      S     N++        +  
Sbjct: 61  VQMQVVQNVFSQGSTQSSENVTDLAIQGNTFFALKPSTAASPVATQNSAFLSRAGAFQVD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                 N     +  T  +  + +      +    + I  D    I    ++        
Sbjct: 121 NTLTLVNPDGYQVLDTQGNPIKFLNSGAAPTTDFGKIISVDNSGLITYLATDGITQNYYN 180

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           T     +    A+                 ++++
Sbjct: 181 TSGAVGVAATVANSATVQRLAVVTASDPTALTKL 214


>gi|163794152|ref|ZP_02188125.1| Flagellar basal body rod protein [alpha proteobacterium BAL199]
 gi|159180766|gb|EDP65285.1| Flagellar basal body rod protein [alpha proteobacterium BAL199]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 16/166 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50
             N A             I  NI N +   Y R+                   + +   V
Sbjct: 3   SLNIASTGMAAQQFNVEVISNNIANMNTTGYKRQRAEFQDLLYQDLRRVGTNSSDAGTIV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q                 A+           L +     +     +        + 
Sbjct: 63  PSGIQIGVGVKTAATYRINEQGALTLTDNKFDLAILGQGYFQVELPNGETAYTRAGSFQT 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + +          +   +   ++ +    N S +   +I     ++
Sbjct: 123 NQDGTLVTPDGYTVQPGITIPSDTLSVTINESGQVFAQIDGQVQEQ 168



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 66/210 (31%), Gaps = 8/210 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                    +     Q+    +        +      ++N   L I              
Sbjct: 52  GTNSSDAGTIVPSGIQIGVGVKTAATYRINEQGALTLTDNKFDLAILGQGYFQVELPNGE 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF------NKNFI 387
            + T   + Q   + + +   G   +  +    +        +    +        +N  
Sbjct: 112 TAYTRAGSFQTNQDGTLVTPDGYTVQPGITIPSDTLSVTINESGQVFAQIDGQVQEQNVG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A    +  L    +N +  LE + S +    +     F  + + +     V+   E
Sbjct: 172 QLQLAIFQNDAGLENIGQNLL--LETSASGAATTGVPGATGFGKLQQGFVEASNVDPVHE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++ LI  +++Y +++K+I  +D+M+ T+  
Sbjct: 230 ITNLITAQRAYELNSKIIETSDQMMSTVNN 259


>gi|312884832|ref|ZP_07744524.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367484|gb|EFP95044.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 49/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 77  TQKVFTQGNTQNTNQDLDLAVMGKGFFQIENSDGQIMYTRNGQFQVNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          ++              D   +      +A       L     N   + +
Sbjct: 137 EPQIQIPDDALSISVGVDGTVTTTSAIDPTPQQVGQITLARFINPAGLEAVGGNL--FRQ 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +  + S+     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGLAEELIASEDGVGSIKQRALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 63.1 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 34/153 (22%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYTIQRQPGAQVDEVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   +  +    + + F  ++              
Sbjct: 61  ELPSGVQLGSGVRVVGTQKVFTQGNTQNTNQDLDLAVMGKGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
               + + + E    N     L   +    + +
Sbjct: 115 TRNGQFQVNSEGLMVNSQGLPLEPQIQIPDDAL 147


>gi|283953936|ref|ZP_06371465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794541|gb|EFC33281.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +       F    + D      +    T        ++  +         +    +
Sbjct: 90  TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGAIAI 149

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    +  
Sbjct: 150 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 207

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 208 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 262



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 40/205 (19%), Gaps = 31/205 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
             + A         Q      NI N +   + +                         SP
Sbjct: 3   SLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTLSP 62

Query: 48  ENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             + V          K   +  L + S+  +        F  ++                
Sbjct: 63  SGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIGYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEI 160
             +     E    N     L   +      +        T +  +   + +        +
Sbjct: 117 NGQFTKDNEGNIVNSDGYRLLPEMTIPEGAIAINVATDGTVSVMLPGEQQETQIGQVELV 176

Query: 161 SNLRRFLSELTVVNDAIKFKTASKH 185
             +          N  ++   +   
Sbjct: 177 QFINPAGLHSMGDNLYLETGASGAP 201


>gi|288574696|ref|ZP_06393053.1| protein of unknown function DUF1078 domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570437|gb|EFC91994.1| protein of unknown function DUF1078 domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 8/201 (3%)

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
              R   +             +              +          +   D +  Q  S
Sbjct: 64  WPWRSHPIGNASMNQVLSETYMSTDEGNLQVTDSPMDVALTDEEGFFVLQ-DGEGNQFYS 122

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            +                   V      +V   A      +    +         + G  
Sbjct: 123 RSGHFLVNEGGQLVNPDGYLLVGDGGPIDVGEAAAVSFTDDGQVIADGIAVAQIDIVGFE 182

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +   L +  +N +   E   S +       QV              VN+ EE+  LI+ +
Sbjct: 183 SPTALRQMGKNLLA--ETEDSGAPAPVEVPQVAVG-----VLERSNVNVVEEMVRLIEAQ 235

Query: 456 QSYNISNKLIMFTDKMLQTLL 476
           ++Y  ++K I  +D M   L+
Sbjct: 236 RAYEAASKGIQTSDDMTGQLI 256



 Score = 36.9 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/164 (6%), Positives = 27/164 (16%), Gaps = 22/164 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN- 49
           +        +              N+ N D   +  R  +                 +  
Sbjct: 1   MHKGIYAGVSAMMVQQGVTDCAANNLANVDTAGFRARKPIAKSFPEVLMERVDPAKGQGE 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSP 100
                     +   S N+ + +  +      +             E       D   N  
Sbjct: 61  IPPWPWRSHPIGNASMNQVLSETYMSTDEGNLQVTDSPMDVALTDEEGFFVLQDGEGNQF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
                    +      N    +L               + +   
Sbjct: 121 YSRSGHFLVNEGGQLVNPDGYLLVGDGGPIDVGEAAAVSFTDDG 164


>gi|226950050|ref|YP_002805141.1| flagellar basal body rod protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841546|gb|ACO84212.1| flagellar basal body rod protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 263

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 39/196 (19%), Gaps = 24/196 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V              L    +        Q F  +           +      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVI------MADGDYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L   +       + N            A+       +   L 
Sbjct: 115 GNFLIDRNGMLVDENGNALDIQLQQPEGVQILNRIGGFDANNINIAEDGSISVRDTDGLN 174

Query: 165 RFLSELTVVNDAIKFK 180
           + + ++ + N      
Sbjct: 175 KVVGKINIYNAVGADA 190



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +         L   RN   +L ++  + 
Sbjct: 150 GGFDANNINIAEDGSISVRDTDGLNKVVGKINIYNAVGADAFLSIGRNL--YLPRDGVNV 207

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +         I + +     V+  +E++ +I  ++++ +S++ I   D+M   ++  
Sbjct: 208 FVNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260

Query: 479 VK 480
           ++
Sbjct: 261 MR 262


>gi|82544456|ref|YP_408403.1| flagellar basal body rod protein FlgG [Shigella boydii Sb227]
 gi|81245867|gb|ABB66575.1| cell-distal portion of basal-body rod [Shigella boydii Sb227]
 gi|320186975|gb|EFW61688.1| Flagellar basal-body rod protein FlgG [Shigella flexneri CDC
           796-83]
 gi|332094081|gb|EGI99133.1| flagellar basal-body rod protein FlgG [Shigella boydii 3594-74]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD+M Q L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMQQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|114777905|ref|ZP_01452819.1| flagellar basal-body rod protein FlgG [Mariprofundus ferrooxydans
           PV-1]
 gi|114551692|gb|EAU54244.1| flagellar basal-body rod protein FlgG [Mariprofundus ferrooxydans
           PV-1]
          Length = 251

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            ++         +A    +     ++         +A       L +   N   +   N 
Sbjct: 129 GITIPADAQSIQIAQDGTVSVTQANATQTVLGQIQIADFLNPAGLAKLGGNL--FQPSNA 186

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +  +   ++     +++       V++ EE+  LI  +++Y +++K I  +D+MLQT 
Sbjct: 187 SGTAVIGNPTENGLGSMTQGTLEMSNVSMVEEMVNLIAGQRAYEMNSKAIQASDEMLQTA 246

Query: 476 LEGVK 480
               +
Sbjct: 247 NNVKR 251



 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/196 (7%), Positives = 36/196 (18%), Gaps = 28/196 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVTVVT 54
               S     I  NI N +   + R                           P  + V  
Sbjct: 1   MAAQSLNVDVISNNIANVNTNGFKRGRANFQDLMYQQIKAPGAEASAAGTQLPTGIQVGL 60

Query: 55  QRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                  +    +      ++ +      + F  ++           +            
Sbjct: 61  GVRTASVDSIFSEGSFQQTNNPLDLTIQGRGFFQVQ------LANGETAYTRAGSFSLDA 114

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
                  + D+L   +   A+                       +           + L 
Sbjct: 115 TGQIVTQNGDVLQPGITIPADAQSIQIAQDGTVSVTQANATQTVLGQIQIADFLNPAGLA 174

Query: 172 VVNDAIKFKTASKHDA 187
            +   +   + +   A
Sbjct: 175 KLGGNLFQPSNASGTA 190


>gi|258621051|ref|ZP_05716085.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573]
 gi|258625279|ref|ZP_05720187.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603]
 gi|262166280|ref|ZP_06034017.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223]
 gi|262170827|ref|ZP_06038505.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451]
 gi|258582452|gb|EEW07293.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603]
 gi|258586439|gb|EEW11154.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573]
 gi|261891903|gb|EEY37889.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451]
 gi|262025996|gb|EEY44664.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 3/189 (1%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +++    +V     ++    + +       F    + D +    +    T+      
Sbjct: 69  GAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403
            ++ S  R    +          +    ++        +                 L   
Sbjct: 129 VTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPI 188

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +N   +L    S      +        + +S   T  VN+ EEL  +I+ ++ Y +++K
Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246

Query: 464 LIMFTDKML 472
           +I   DKM+
Sbjct: 247 VISAVDKMM 255



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/226 (7%), Positives = 45/226 (19%), Gaps = 20/226 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57
               ++   +      A+I  N+ NA    + +   +                       
Sbjct: 4   ALWVSKTGLDAQQTNIATISNNLANASTVGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63

Query: 58  ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110
                     +                         +        + +       +    
Sbjct: 64  SGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123

Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            E            +  I   E+     + N    +  V+  + +        +  +   
Sbjct: 124 DEGAIVTSGSGYRLQPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183

Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 184 GLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTE 229


>gi|157961173|ref|YP_001501207.1| flagellar basal body rod protein FlgG [Shewanella pealeana ATCC
           700345]
 gi|157846173|gb|ABV86672.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC
           700345]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
               G   +  ++ + +      ++     +           + +       F    + D
Sbjct: 50  NQAGGISASNTKLPNGLSIGSGTKVVATQEIFTQGNMLTTDNSLDLLVEGPGFFEVQLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNK 384
                 +    ++    Q  +  S      +++         ++   ++      ++ N+
Sbjct: 110 GTAAYTRNGQFSLDDTGQIVTPGSGYVVQPAITIPEDATSITVSAEGEVSVKTPGNAENQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L    +N   ++E   S +      S      I +    T  VN+
Sbjct: 170 VVGQLAISDFINPSGLDPMGQNL--YMETGASGTPIQGTASLDGMGAIRQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.0 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/165 (6%), Positives = 38/165 (23%), Gaps = 27/165 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      + I  N+ NA    + +   +                    
Sbjct: 1   MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGISASNT 60

Query: 46  -SPENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +++ +     +  +      +    +++        F  ++           +  
Sbjct: 61  KLPNGLSIGSGTKVVATQEIFTQGNMLTTDNSLDLLVEGPGFFEVQ------LPDGTAAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               +                + +  I   E+      ++  EV 
Sbjct: 115 TRNGQFSLDDTGQIVTPGSGYVVQPAITIPEDATSITVSAEGEVS 159


>gi|83646788|ref|YP_435223.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396]
 gi|83634831|gb|ABC30798.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396]
          Length = 254

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A    +  L    +    ++  + + +             I + +  +  V+L
Sbjct: 161 EVGEIQLAKFVNDQALESAGQGL--YIPADDAGAPLYSQAGVNGLGMIQQGFLESSNVDL 218

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            +EL  L+  ++ Y  ++ +I   D+++Q
Sbjct: 219 VKELVELVTAQRGYQANSHVIRAADEIMQ 247



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 29/141 (20%), Gaps = 21/141 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------P 47
           ++     A+       +Q  +I  N+ N +   Y +                        
Sbjct: 1   MIDALYVAETGLQAGQKQIETISNNMANLNTVAYKKSRVAFGDLVSRQPAASAAEGKGIG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                      +       L A  + +        F  +                    L
Sbjct: 61  SVGMGTKVAEVSMQFDSGDLKATENQLDLAIRGDGFFEVL------LENGEYGYTRNGAL 114

Query: 108 RDSLESYSKNLSEDILGKTVI 128
           +   + Y   L+   L   + 
Sbjct: 115 KIDEDGYLSTLTGLRLSDQIQ 135


>gi|113969608|ref|YP_733401.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-4]
 gi|113884292|gb|ABI38344.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-4]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 64/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGISASNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTTAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVSVKTPGTAE 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      ++       L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLSMSDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 32/159 (20%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                + N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   ++      ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDDATSITVSAEGEVS 159


>gi|256014942|ref|YP_003104951.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915]
 gi|255997602|gb|ACU49289.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 37/186 (19%), Gaps = 34/186 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     T                     
Sbjct: 3   ALMIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R           +   +        + +  ++           + 
Sbjct: 63  PEGALVGLGVQTAAVR---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     L  + +   +    + +      + +   K++   ++    ++
Sbjct: 114 YTRAGAFNKNADGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQL 173

Query: 161 SNLRRF 166
           +     
Sbjct: 174 TLANFT 179



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + I     +     +       +        +    +  +     
Sbjct: 65  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  +      +           V                   +     +A       L
Sbjct: 125 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S    + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 185 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 242

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 243 NSKVIQAADEM 253


>gi|153952075|ref|YP_001398357.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939521|gb|ABS44262.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 263

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +       F    + D      +    T        ++  +         +    +
Sbjct: 91  TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    +  
Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/208 (8%), Positives = 40/208 (19%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQMQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K      L + S+  +        F  ++             
Sbjct: 61  LSPSGIEVGVGVRPTAVTKVFTKGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIE 157
                +     E    N     L   +               T +  +   + +      
Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|332088746|gb|EGI93858.1| flagellar basal-body rod protein FlgG [Shigella boydii 5216-82]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N     E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +           + + Y +T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L +
Sbjct: 200 APNESTPGLNGAGLLYQGYVDTSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVRS---VATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|120613061|ref|YP_972739.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1]
 gi|326319099|ref|YP_004236771.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|120591525|gb|ABM34965.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1]
 gi|323375935|gb|ADX48204.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 4/198 (2%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                L    R +  S +        S N   + I                 T   + Q 
Sbjct: 63  PTGLHLGLGVRTVATSRNFTQGSLAQSNNNLDVAINGNGFFQVTMPDGTTGYTRDGSFQL 122

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            S    +   G      +    N  G     +    +           G     + +  A
Sbjct: 123 DSQGRLVTSSGLPVANGITVPANATGISISTDGIVSATVPGTTAPQQIGTLGMASFINSA 182

Query: 405 R----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                    + E   S               I + +  T  VN+ EEL  +I+ +++Y +
Sbjct: 183 GLEPIGQNLFKESAASGQPQQGTPGTNGLGIIRQGFLETSNVNVVEELVSMIQTQRAYEM 242

Query: 461 SNKLIMFTDKMLQTLLEG 478
           ++K I  +D+ML  L + 
Sbjct: 243 NSKAIQTSDQMLAKLAQL 260



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 36/159 (22%), Gaps = 27/159 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR------------------RDTMTT 44
           ++     A+   +    Q   I  N+ N     Y R                  + T   
Sbjct: 1   MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGAQTTEQN 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +         ++N     L   ++ +        F  +            +  
Sbjct: 61  QLPTGLHLGLGVRTVATSRNFTQGSLAQSNNNLDVAINGNGFFQV------TMPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
                 +   +      S   +   +   A     + +T
Sbjct: 115 TRDGSFQLDSQGRLVTSSGLPVANGITVPANATGISIST 153


>gi|148380595|ref|YP_001255136.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC
           3502]
 gi|153933262|ref|YP_001384882.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935902|ref|YP_001388351.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str.
           Hall]
 gi|168180938|ref|ZP_02615602.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916]
 gi|148290079|emb|CAL84198.1| putative flagellar basal-body rod protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929306|gb|ABS34806.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931816|gb|ABS37315.1| flagellar basal body rod protein [Clostridium botulinum A str.
           Hall]
 gi|182668229|gb|EDT80208.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916]
          Length = 263

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 39/196 (19%), Gaps = 24/196 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V              L    +        Q F  +           +      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVI------MADGDYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L   +       + N            A+       +   L 
Sbjct: 115 GNFLIDRNGMLVDENGNALDIQLQQPEGMQILNRIGGFDANNINIAEDGSISVRDTDGLN 174

Query: 165 RFLSELTVVNDAIKFK 180
           + + ++ + N      
Sbjct: 175 KVVGKINIYNAVGADA 190



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +         L   RN   +L ++  + 
Sbjct: 150 GGFDANNINIAEDGSISVRDTDGLNKVVGKINIYNAVGADAFLSIGRNL--YLPRDGVNV 207

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +         I + +     V+  +E++ +I  ++++ +S++ I   D+M   ++  
Sbjct: 208 FVNNDV------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260

Query: 479 VK 480
           ++
Sbjct: 261 MR 262


>gi|190574261|ref|YP_001972106.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia
           K279a]
 gi|194365678|ref|YP_002028288.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia
           R551-3]
 gi|190012183|emb|CAQ45806.1| putative flagellar basal-body rod protein [Stenotrophomonas
           maltophilia K279a]
 gi|194348482|gb|ACF51605.1| flagellar basal-body rod protein FlgG [Stenotrophomonas maltophilia
           R551-3]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 2/211 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G   A  Q+   +      ++   A+       ++   A +       F    + D 
Sbjct: 51  QPGGSSSAQTQLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +   +  S  I  + +  +N  +    G    +   +V         +     + +   
Sbjct: 111 SSAYTRDGSFKINQDSELVTNSGYPVQPGIQIPEGAQSVTIGTDGTISVKMADGAASVEV 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   +LE   S               + +       VN+ E
Sbjct: 171 GALTLTDFVNPAGLQARGENL--FLETTASGPAQNGNPGLNGLGTVVQGALEGSNVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           EL  +I+ +++Y ++ K I  TD ML  L  
Sbjct: 229 ELVSMIETQRAYEMNAKAISTTDSMLGYLNN 259



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 38/137 (27%), Gaps = 15/137 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54
           +      A+   +    + + +  N+ N +   + +                  + +  T
Sbjct: 1   MNQALWIAKTGLDAQQMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQT 60

Query: 55  QRSENKNMFDKVLHAHSS----AIGQQRLLQSFEALKEMMSADD---HYNNSPTHYISKL 107
           Q      +   V    ++      GQQ+  ++ + +       +      +S        
Sbjct: 61  QLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILG 124
           + + +S     S   + 
Sbjct: 121 KINQDSELVTNSGYPVQ 137


>gi|315928464|gb|EFV07776.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 437

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/435 (6%), Positives = 84/435 (19%), Gaps = 41/435 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +              NI N +   +                          
Sbjct: 1   MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +       +               F  + +     D     
Sbjct: 61  GSNPLQIGLGVSVSSTTRIHSQ---GSVQTTDKNTDVAINGDGFFMVSD-----DGGLTR 112

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                   +        N +  ++    I+   + + +  T                  E
Sbjct: 113 YLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTE 172

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++         + +N     +     D+    +++    +  ++         + N + V
Sbjct: 173 VAIKANL---NSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQFYTTSKNSVEV 229

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
                      V     F    +     E   I++       +      +          
Sbjct: 230 TEKG-------VDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGQGAQVNQGNNGVFD 282

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            +        +         +            N                      +   
Sbjct: 283 PNQKVNQNTVIFWGHEQKPTTLDITLNGVHIQNNSIKSLDEAIAYINTFTAPNDTRDGTG 342

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           V    +++ S +      +     N+KN+    +  N   +  N     +P      N+ 
Sbjct: 343 VRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNPNNSAGELINIRVAGNPADFAWNNIQ 402

Query: 400 LLEYARNSIGWLEKN 414
           L       +      
Sbjct: 403 LRPAGNPIVNGAGSA 417


>gi|227820858|ref|YP_002824828.1| flagellar basal body rod protein FlgG [Sinorhizobium fredii NGR234]
 gi|227339857|gb|ACP24075.1| flagellar basal-body rod protein FlgG [Sinorhizobium fredii NGR234]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/184 (7%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             + A    N        I  NI N +   Y R     +                     
Sbjct: 3   ALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L   S+ +    + + +  ++           + 
Sbjct: 63  PEGAIVGLGVQTAAVR---NLHVQGSLVNTSNDLDLALVGRGWFQVE------TPNGETV 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +       +    +   +    +      + S + + +I    + +   ++
Sbjct: 114 YTRSGAFNTNATGQLVTIDGYTVVPGITVPQDATEITVSASGQVLVRIGDATETQEIGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TIAN 177



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + +           +   V   +      + +    +  +     
Sbjct: 65  GAIVGLGVQTAAVRNLHVQGSLVNTSNDLDLALVGRGWFQVETPNGETVYTRSGAFNTNA 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             Q  +   +    G    +    +   A    L+     +  +      +A       L
Sbjct: 125 TGQLVTIDGYTVVPGITVPQDATEITVSASGQVLVRIGDATETQEIGQLTIANFVNEAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + +   S    +   +   F  I + Y  +  V+  +E++ LI  +++Y +
Sbjct: 185 EPQGENL--FKQTAASGEPIVGTPADPGFAQIKQGYLESSNVDPVKEITDLISAQRAYEM 242

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 243 NSKVIQAADEM 253


>gi|149927800|ref|ZP_01916051.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105]
 gi|149823422|gb|EDM82653.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105]
          Length = 260

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R       ++     +       F    + D      +  S  I  N    ++  + 
Sbjct: 76  STVRNFAQGNLQQTGNTLDVAINGQGFFQVQMPDGTTSYTRDGSIQIDANGTLVTSNGYP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
             G     + +  +                  +      +A       L    +N     
Sbjct: 136 VLGPVTIPQGVQEISISQDGVVSAVVQGQVQPQELGQIQLASFVNPAGLFSMGQNLYS-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +    +        +S+ +  T  VN+ EEL  LI+ +++Y I++K I  +D+M
Sbjct: 194 ETAASGAPTQAVAGTNGVGFVSQGFVETSNVNVVEELVGLIQAQRAYEINSKAISTSDQM 253

Query: 472 LQTL 475
           LQ L
Sbjct: 254 LQRL 257



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 29/149 (19%), Gaps = 33/149 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A+   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MMRSLWIAKTGLDAQQTQLDVISNNLANTATNGFKRSRAVFEDLLYQTLRQPGAQTTEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V+            L    + +      Q F  ++           
Sbjct: 61  QVPSGLQIGTGVKPVSTVRN---FAQGNLQQTGNTLDVAINGQGFFQVQ------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTV 127
           +       ++          +   +   V
Sbjct: 112 TSYTRDGSIQIDANGTLVTSNGYPVLGPV 140


>gi|260779345|ref|ZP_05888237.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605509|gb|EEX31804.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 77  TQKVFTQGNTQNTSQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +      +   +V               +  +      +A       L     N   + E
Sbjct: 137 EPQIQIPENALSVSVGVDGTVSATTADSTAPQELGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +  +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGQADELIAGEDGVGSIKQGSLEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 32/153 (20%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGALVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   S  +    + Q F  ++              
Sbjct: 61  ELPAGVQLGSGVRVVGTQKVFTQGNTQNTSQELDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
               +   + E    N     L   +      +
Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPENAL 147


>gi|77464904|ref|YP_354408.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides
           2.4.1]
 gi|77389322|gb|ABA80507.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides
           2.4.1]
          Length = 261

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      + G      L     N   +LE   S      +  +  F  + + Y     
Sbjct: 166 QPQLLGQISLTGFTNEKGLEAIGSNL--FLETAASGPPIAGVAGEDGFGTLRQGYLEESS 223

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           V+  +E++ LIK ++ Y ++ K+I   D+ML
Sbjct: 224 VDSVQEITELIKAQRGYELNAKVITAADQML 254



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 28/178 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQAVRPGTVSAEDGRML 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L      +      + +  +            S    
Sbjct: 63  PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              L+ S E    +     +   +    +    + + +             ++  +IS
Sbjct: 117 DGALKRSAEGLIVSSDGHEVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQIS 174


>gi|20806699|ref|NP_621870.1| flagellar basal body and hook proteins [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515153|gb|AAM23474.1| Flagellar basal body and hook proteins [Thermoanaerobacter
           tengcongensis MB4]
          Length = 266

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 2/163 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                    D            +       P        +      N   ++    +   
Sbjct: 106 PDDKVYYTRDGSFKLSPDGNTFMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVK 165

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             D   +      +        LL    N   +     S         +     + + + 
Sbjct: 166 NPDGTTQEVATLGIYNFTNPQGLLSVGNNL--YEATEASGQPGTRDDFEGRMGKVMQGFL 223

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            T  V + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 50/236 (21%), Gaps = 6/236 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A             I  N+ N +   + R                NV     R
Sbjct: 1   MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGR 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             N  +   V  +       +  L       ++      +                S+  
Sbjct: 61  PVNMQVGVGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKL 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   +       D    +  + N    +             +++ N      E+  +   
Sbjct: 121 SPDGNTFMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGIY 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                       + L +      +          +       + TS+   + E V 
Sbjct: 181 NFTNPQGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVD 236


>gi|86151551|ref|ZP_01069765.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85841180|gb|EAQ58428.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 263

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 48/179 (26%), Gaps = 2/179 (1%)

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
              +    +       F    + D      +    T        ++  +         + 
Sbjct: 87  KSTNTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEG 146

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
              +         +    +          +        L     N   +LE   S +   
Sbjct: 147 ATAINVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVA 204

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 205 GIAGQDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/208 (8%), Positives = 41/208 (19%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K   +  L + ++  +        F  ++             
Sbjct: 61  LSPSGIEVGVGVRPTAVTKVFTEGNLKSTNTDGLDMAIAGNGFFQIQ------LPDGTIG 114

Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                +     E    N     L              V    T +  +   + +      
Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|261211320|ref|ZP_05925608.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341]
 gi|260839275|gb|EEX65901.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341]
          Length = 262

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 3/189 (1%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              +++    +V     ++    + +       F    + D +    +    T+      
Sbjct: 69  GAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDDEGAI 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEY 403
            ++ S  R    +          +    ++        +                 L   
Sbjct: 129 VTSGSGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPGGLEPI 188

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            +N   +L    S      +        + +S   T  VN+ EEL  +I+ ++ Y +++K
Sbjct: 189 GQNL--YLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSK 246

Query: 464 LIMFTDKML 472
           +I   DKM+
Sbjct: 247 VISAVDKMM 255



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/226 (6%), Positives = 44/226 (19%), Gaps = 20/226 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRS-- 57
               ++   +       +I  N+ NA    + +   +                       
Sbjct: 4   ALWVSKTGLDAQQTNITTISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLP 63

Query: 58  ------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110
                     +                         +        + +       +    
Sbjct: 64  SGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLD 123

Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            E            +  I   E+     + N    +  V+  + +        +  +   
Sbjct: 124 DEGAIVTSGSGYRLQPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183

Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 184 GLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTE 229


>gi|28897555|ref|NP_797160.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus RIMD
           2210633]
 gi|91225875|ref|ZP_01260844.1| polar flagellar FlgG [Vibrio alginolyticus 12G01]
 gi|153839683|ref|ZP_01992350.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ3810]
 gi|254230138|ref|ZP_04923533.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
 gi|260364613|ref|ZP_05777215.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           K5030]
 gi|260878282|ref|ZP_05890637.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AN-5034]
 gi|260898112|ref|ZP_05906608.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           Peru-466]
 gi|260901956|ref|ZP_05910351.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ4037]
 gi|262394937|ref|YP_003286791.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
 gi|269965422|ref|ZP_06179541.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B]
 gi|5361010|gb|AAD42917.1|U12817_11 polar flagellar FlgG homolog [Vibrio parahaemolyticus]
 gi|28805767|dbj|BAC59044.1| polar flagellar FlgG [Vibrio parahaemolyticus RIMD 2210633]
 gi|91189525|gb|EAS75801.1| polar flagellar FlgG [Vibrio alginolyticus 12G01]
 gi|149746793|gb|EDM57781.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ3810]
 gi|151937331|gb|EDN56194.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
 gi|262338531|gb|ACY52326.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
 gi|269829901|gb|EEZ84131.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B]
 gi|308086113|gb|EFO35808.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           Peru-466]
 gi|308090170|gb|EFO39865.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AN-5034]
 gi|308106768|gb|EFO44308.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           AQ4037]
 gi|308115105|gb|EFO52645.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus
           K5030]
 gi|328473451|gb|EGF44299.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus
           10329]
          Length = 262

 Score = 68.5 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 65/208 (31%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+       ++ S       +          +    ++        +  
Sbjct: 110 GNIGYTRNGQFTLNGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVSVRVRGQQDNQ 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N   +L    S      +        I +S      VN+
Sbjct: 170 VVGQLTITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      A+I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
             + E            +  I   E+ +     +  EV 
Sbjct: 121 TLNGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVS 159


>gi|260222470|emb|CBA32066.1| Flagellar basal-body rod protein flgG [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 260

 Score = 68.5 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R       ++     +       F    + D      +  +  I    +  ++    
Sbjct: 76  ATSRSFSQGNLQQSSNNLDVAIQGNGFFQVTMPDGTTGYTRDGAFQIDNAGRLVTSNGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G        +V              +   +      +A       L    +N     
Sbjct: 136 ILNGINIPANATSVAIAQDGAVTAMVPGNVAPQPIGTITLASFINPAGLEPKGQNIYA-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S   +           +++ +  T  VN+ +EL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ESTASGQPNAGTAGANGLGTLAQGFVETSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTL 475
           LQ L
Sbjct: 254 LQKL 257



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/222 (4%), Positives = 44/222 (19%), Gaps = 27/222 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++        Q   I  N+ N     + +   +                   +
Sbjct: 1   MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKKSHAVFEDLMYQNLRQVGSNTSEQS 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +         +++     L   S+ +        F  +            +  
Sbjct: 61  TLPTGLQLGLGVRTVATSRSFSQGNLQQSSNNLDVAIQGNGFFQV------TMPDGTTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +          +   +   +   A                +  +   +    I+
Sbjct: 115 TRDGAFQIDNAGRLVTSNGLPILNGINIPANATSVAIAQDGAVTAMVPGNVAPQPIGTIT 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                            +  ++     +        L  +++
Sbjct: 175 LASFINPAGLEPKGQNIYAESTASGQPNAGTAGANGLGTLAQ 216


>gi|323498418|ref|ZP_08103414.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM
           21326]
 gi|323316491|gb|EGA69506.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM
           21326]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 8/199 (4%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L+    S V   Q    +       +  +          +       G           
Sbjct: 65  GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
               +     Y   P  +    ++S     + +         N+          F     
Sbjct: 125 EGAIVTSGAGYGLEPEIVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQITTVDFI---- 180

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L    +N   +L    S      +     F  I +S   T  VN+ EEL  +I+
Sbjct: 181 --NPGGLEPIGQNL--YLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIE 236

Query: 454 VEQSYNISNKLIMFTDKML 472
            ++ Y +++K+I   DKM+
Sbjct: 237 AQRVYEMNSKVISAVDKMM 255



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPTGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       ++  + +        +  +
Sbjct: 121 TVNDEGAIVTSGAGYGLEPEIVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQITTVDFI 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTE 229


>gi|126463746|ref|YP_001044860.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105410|gb|ABN78088.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17029]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      + G      L     N   +LE   S      +  +  F  + + Y     
Sbjct: 166 QPQLLGQISLTGFTNEKGLEAIGSNL--FLETAASGPPIGGVAGEDGFGTLRQGYLEESS 223

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           V+  +E++ LIK ++ Y ++ K+I   D+ML
Sbjct: 224 VDSVQEITELIKAQRGYELNAKVITAADQML 254



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 36/178 (20%), Gaps = 28/178 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGRML 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L      +      + +  +            S    
Sbjct: 63  PTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              L+ S E    +     +   +    +    + + +             ++  +IS
Sbjct: 117 DGALKRSAEGLIVSSDGHEVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQIS 174


>gi|262276415|ref|ZP_06054224.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP
           101886]
 gi|262220223|gb|EEY71539.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP
           101886]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 71/253 (28%), Gaps = 3/253 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+     ++  
Sbjct: 5   LWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    +++    RV      +    A +       F    + D +    +    T+  
Sbjct: 65  GLMLGAGSKVVATQRVHTNGNVQTTNNALDLMIEGDGFFQILLPDGNIGYQRNGQFTLND 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVT 399
                ++ +       +          +    ++                          
Sbjct: 125 EGVIVTSGAGYPLEPEIVVPPDAIQVTVGTDGEVSARLRGQQENAILGQITTVDFINPGG 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   +L    S      +        + +S   T  VN+ EEL  +I+ ++ Y 
Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGLDGLGSVRQSMLETSNVNVTEELVNMIEAQRVYE 242

Query: 460 ISNKLIMFTDKML 472
           +++K+I   D+ML
Sbjct: 243 MNSKVISSVDQML 255



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 55/238 (23%), Gaps = 38/238 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++   +      ++I  N+ NA    + +   +                    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        VV  +  +    +  +   ++A+        F  +           N
Sbjct: 61  ELPSGLMLGAGSKVVATQRVH---TNGNVQTTNNALDLMIEGDGFFQIL------LPDGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK----TVIDNAEEVVQNFNTSAREVQKIRADADK 154
                  +   + E            +       D  +  V      +  ++  + +A  
Sbjct: 112 IGYQRNGQFTLNDEGVIVTSGAGYPLEPEIVVPPDAIQVTVGTDGEVSARLRGQQENAIL 171

Query: 155 EIELEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                +  +     E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 172 GQITTVDFINPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGSVRQSMLETSNVNVTE 229


>gi|254478074|ref|ZP_05091457.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035936|gb|EEB76627.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 266

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 2/163 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                    D            +       P        +      N   ++    +   
Sbjct: 106 PDDKVYYTRDGSFKLSPDGNTLMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVK 165

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             D   +      +        LL    N   +     S         +     + + + 
Sbjct: 166 NPDGTTQEVATLGIYNFTNPQGLLSVGNNL--YEATEASGQPGTRDDFEGRMGKVMQGFL 223

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            T  V + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 53.9 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 51/236 (21%), Gaps = 6/236 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A             I  N+ N +   + R                NV     R
Sbjct: 1   MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGR 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             N  +   V  +       +  L       ++      +                S+  
Sbjct: 61  PVNMQVGVGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKL 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           +   + L     D    +  + N    +             +++ N      E+  +   
Sbjct: 121 SPDGNTLMLVTADGYPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGIY 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                       + L +      +          +       + TS+   + E V 
Sbjct: 181 NFTNPQGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVD 236


>gi|149189838|ref|ZP_01868118.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1]
 gi|148836324|gb|EDL53281.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 4/193 (2%)

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                 + +  +    + +         + +          I++ D ++    +    VN
Sbjct: 64  TGVQLGSGVRVVGTQKVFTQGSAQNTGQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHVN 123

Query: 342 PQY-RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVT 399
            +    N   L     +         ++     +     D    ++     +A       
Sbjct: 124 SEGLMVNSQGLPLEPQIQIPDNALTLSVGVDGTVTATTADGPAPQDLGQITLAKFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     N   + E   S   +  +  +     I +       V + EE+  +I  +++Y 
Sbjct: 184 LEAIGGNL--FKETEASGQAEELIAGEEGAGSIKQGALEGSNVQVVEEMVDMITTQRAYE 241

Query: 460 ISNKLIMFTDKML 472
           ++ K++   D ML
Sbjct: 242 MNAKVVSAADDML 254



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/154 (7%), Positives = 31/154 (20%), Gaps = 27/154 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                      +    + Q F  ++              
Sbjct: 61  QLPTGVQLGSGVRVVGTQKVFTQGSAQNTGQDLDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
               +   + E    N     L   +      + 
Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPDNALT 148


>gi|157373205|ref|YP_001471805.1| flagellar basal-body rod protein FlgG [Shewanella sediminis
           HAW-EB3]
 gi|157315579|gb|ABV34677.1| flagellar basal-body rod protein FlgG [Shewanella sediminis
           HAW-EB3]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 61/252 (24%), Gaps = 2/252 (0%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T        +     N   V +               Q    P G++  L ++  
Sbjct: 5   LWVSKTGLTAQDVKMTTIANNLANVNTTGFKRDRVAFNDLFYQTQRQPGGQVDELNELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            +      ++    ++             +       F      + D    +        
Sbjct: 65  GLQLGTGTRVVGTQKIFTSGDMLTTNQQLDLAIEGQGFFQIEEANGDLAYSRDGQFYRNS 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +    ++            +    +               +  +      +        L
Sbjct: 125 DGLMVTSQGLPLVPNIEIPEDALTITIATDGIVTAQISGQAEAQELGQITLVNFTNPTGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S +    +        + +       VN+ EE+  +I  +++Y +
Sbjct: 185 EARGDNL--YRETGASGAAIEGVAGDQAIGQLRQGALEGANVNVVEEMVEMISTQRAYEM 242

Query: 461 SNKLIMFTDKML 472
           + K++  +D ML
Sbjct: 243 NAKVVSASDDML 254



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/220 (7%), Positives = 50/220 (22%), Gaps = 27/220 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R                        
Sbjct: 1   MQSALWVSKTGLTAQDVKMTTIANNLANVNTTGFKRDRVAFNDLFYQTQRQPGGQVDELN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               +   +  +      Q F  ++E         +   
Sbjct: 61  ELPSGLQLGTGTRVVGTQKIFTSGDMLTTNQQLDLAIEGQGFFQIEEA------NGDLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   + +          L   +    + +     T      +I   A+ +   +I+
Sbjct: 115 SRDGQFYRNSDGLMVTSQGLPLVPNIEIPEDALTITIATDGIVTAQISGQAEAQELGQIT 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
            +               ++      A       D  + ++
Sbjct: 175 LVNFTNPTGLEARGDNLYRETGASGAAIEGVAGDQAIGQL 214


>gi|317047693|ref|YP_004115341.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b]
 gi|316949310|gb|ADU68785.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b]
          Length = 260

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       +    + D  +   +  S  +  N Q  +N  +    G  
Sbjct: 82  TQGNLSQTSNSKDLAINGQGYFEVQMPDGTSAYTRDGSFQVDQNGQLVTNSGYTVQPGIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         ++    +  L     N   + E   S 
Sbjct: 142 IPANATSITVSRDGIVSVTQQGQTNPTQVGQLTLSTFMNDAGLDSLGENL--YQETQASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +       Q     + + Y  T  VN+ EEL  +I+ +++Y I++K +  +D+ML  L +
Sbjct: 200 AATQSTPGQNGAGLLYQGYVETSNVNVAEELVSMIQTQRAYEINSKAVSTSDQMLAKLTQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/170 (7%), Positives = 32/170 (18%), Gaps = 21/170 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A+   +        I  N+ N     + R   +                   T
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTVRQPGTQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH   +              +           S     
Sbjct: 61  TLPSGMQIGTGVR---PVTTERLHTQGNLSQTSNSKDLAINGQGYFEVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              +          S   +   +   A       +         +   + 
Sbjct: 118 GSFQVDQNGQLVTNSGYTVQPGITIPANATSITVSRDGIVSVTQQGQTNP 167


>gi|239817163|ref|YP_002946073.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110]
 gi|239803740|gb|ACS20807.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110]
          Length = 260

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 2/170 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +     G F    + D      +  S     + Q  +   F             ++   
Sbjct: 93  TDVAINGGGFFQVLMPDGTTAYTRDGSFQTDRDGQLVTASGFPVQPAITLPANATSLTIG 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                 I     +         +A       L     N     E + S + +        
Sbjct: 153 RDGIVSITQAGQTNTVQVGQLQLATFLNPAGLQSKGENLYA--ETDASGAPNQVNPGIDG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +S+ Y     VN+ EEL  +I  +++Y I++K +  +D+MLQ L + 
Sbjct: 211 AGILSQGYVEASNVNVVEELVNMIATQRAYEINSKAVQTSDQMLQRLAQL 260



 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/176 (6%), Positives = 28/176 (15%), Gaps = 33/176 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +    Q   +  N+ N     + R   +                    
Sbjct: 1   MMRSLYIAKTGLDAQQTQLDVVSNNLANVGTTGFKRSRAVFEDLMYQNLRQVGGQTSDQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV     +       L               F  +            
Sbjct: 61  RLPSGLQVGTGVHVVATERIHSQ---GNLTKTDKPTDVAINGGGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           +        +   +      S   +   +   A                     + 
Sbjct: 112 TAYTRDGSFQTDRDGQLVTASGFPVQPAITLPANATSLTIGRDGIVSITQAGQTNT 167


>gi|170758330|ref|YP_001787958.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405319|gb|ACA53730.1| flagellar basal body rod protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 263

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/191 (9%), Positives = 40/191 (20%), Gaps = 24/191 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     +++       +  SI  N+ N +   Y R D                      
Sbjct: 1   MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRQ 60

Query: 48  ---ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  V             +L    +        Q F  +           N      
Sbjct: 61  EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVI------MSDGNYAYERS 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                       + + + L           + N            A+       +I  + 
Sbjct: 115 GNFVIDRNGMLVDENGNRLEIQFQGTEGMQILNRIGGFSRNNINIAEDGSISVKDIDGIN 174

Query: 165 RFLSELTVVND 175
           + + ++ + N 
Sbjct: 175 KMVGKINIYNA 185



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
             F  N  N+A    +     D  NK      +     +   +   RN     E     +
Sbjct: 150 GGFSRNNINIAEDGSISVKDIDGINKMVGKINIYNAVGSDAFVSIGRNLYIPQEGVNVFA 209

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++           I + +     V+  +E++ +I  ++++ +S++ I   D+M   ++  
Sbjct: 210 NNDV--------SILQGFLENSNVDAGKEMTEMIITQRAFELSSRGIKTADEMWG-IVNN 260

Query: 479 VK 480
           ++
Sbjct: 261 MR 262


>gi|83858806|ref|ZP_00952328.1| flagellar basal-body rod protein FlgG [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853629|gb|EAP91481.1| flagellar basal-body rod protein FlgG [Oceanicaulis alexandrii
           HTCC2633]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 66/213 (30%), Gaps = 2/213 (0%)

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
              S        A   +   V          + R+       +     +       +   
Sbjct: 46  QTISQPGANSSNAGTIVPTGVQVGLGVNAGSVYRITEQGGMSETNNPYDVAISGQGYFRV 105

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
            + D ++   +  + ++  N +  +   +    G V       V         +      
Sbjct: 106 QLPDGNDAYTRAGNFSLSPNGEIVTADGYAVMPGIVIPAEARQVVINNQGQVQVLLDGQP 165

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
             +      +A       L +   N +  LE   S + +L   +   F  + + +     
Sbjct: 166 QPQVVGQFELATFPNEAGLEQIGDNLL--LESAASGAPNLGAPTDPGFGSLRQRFVEVSN 223

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           V+   E++ LI+ +++Y ++ ++I   D+ML T
Sbjct: 224 VDAVTEITSLIQAQRAYEMNARVITAADEMLAT 256



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/163 (7%), Positives = 30/163 (18%), Gaps = 34/163 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             + A       S     I  N+ N +   + R+                          
Sbjct: 3   ALSTAATGMEAQSLAVEVISHNLANMNTIAFKRQRAEFEDLLYQTISQPGANSSNAGTIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +      +   ++        Q +  ++          N  
Sbjct: 63  PTGVQVGLGVNAGSVYRITEQ---GGMSETNNPYDVAISGQGYFRVQ------LPDGNDA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                    S            +   ++  AE      N   +
Sbjct: 114 YTRAGNFSLSPNGEIVTADGYAVMPGIVIPAEARQVVINNQGQ 156


>gi|103488387|ref|YP_617948.1| protein of unknown function DUF1078-like protein [Sphingopyxis
           alaskensis RB2256]
 gi|98978464|gb|ABF54615.1| protein of unknown function DUF1078-like protein [Sphingopyxis
           alaskensis RB2256]
          Length = 275

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 2/143 (1%)

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +  N    +    L  G             +     +   + +  ++      +A   
Sbjct: 134 GNVTDNTLAGAFDFQLPTGAPSDPASALVNVTIGLDGLVTATFANGEDQMLGKVAMATFP 193

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           T   L         W     S    +   +      I         V++ EEL  L+  +
Sbjct: 194 TMSGLRPTGDAH--WQSTGESGPPTIDAATNGPMGAIRSGALERSNVDITEELVMLMAAQ 251

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           +++  + K I    ++ QT++  
Sbjct: 252 RNFQANAKAIEGASQLTQTIIGL 274



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 36/166 (21%), Gaps = 14/166 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQ 55
            F  + +    +    + I  NI NA    + R          +                
Sbjct: 2   SFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRL 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +        +    +    + +    +K     +                + + Y 
Sbjct: 62  NGITQQFTQGSYESSEKTLDLAIVGEGLFIVK----GEPPREQVSYTRNGSFEPTPDGYV 117

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
            + +   L    +D    V  N    A + Q             ++
Sbjct: 118 IDTTGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASALVN 163


>gi|71282391|ref|YP_268224.1| flagellar basal body rod protein FlgG [Colwellia psychrerythraea
           34H]
 gi|71148131|gb|AAZ28604.1| flagellar basal-body rod protein FlgG [Colwellia psychrerythraea
           34H]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 62/208 (29%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     +    ++     ++    ++           A +       F    + D
Sbjct: 50  NQPGGRTAQDTEAPSGLMLGAGTKVVATQKIHTQGDMITSDNALDLMIQGEGFFEIQMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
             +   +    T+       +  +       V+         ++   ++        +  
Sbjct: 110 GSSAYSRNGQFTMDDEGNMVTPGAGYMIQPQVTIPEDALSIIVSQDGEVSVTLQGQPDPA 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N     E   S +    +     +  + +    T  VN 
Sbjct: 170 VVGQINLINFVNPTGLQPIGQNLYT--ETAVSGAPQEGVPGLEGYGMLVQGALETSNVNT 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNLIESQRVYEMNSKVISAVDEML 255



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 49/203 (24%), Gaps = 19/203 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           + A    ++   +  ++  A I  N+ NA    + +   +           P   T    
Sbjct: 1   MNAALWISKTGLDAQTKDIAVISNNLANASTIGFKKSRAVFEDLLYQNINQPGGRTAQDT 60

Query: 56  RSENKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            + +  M          + +H     I     L      +          +S      + 
Sbjct: 61  EAPSGLMLGAGTKVVATQKIHTQGDMITSDNALDLMIQGEGFFEIQMPDGSSAYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163
               E          + +  +   E+    +V      +  +Q     A       I+ +
Sbjct: 121 TMDDEGNMVTPGAGYMIQPQVTIPEDALSIIVSQDGEVSVTLQGQPDPAVVGQINLINFV 180

Query: 164 RRFLSELTVVNDAIKFKTASKHD 186
                +    N   +   +    
Sbjct: 181 NPTGLQPIGQNLYTETAVSGAPQ 203


>gi|163738060|ref|ZP_02145476.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis
           BS107]
 gi|163742544|ref|ZP_02149930.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis
           2.10]
 gi|161384129|gb|EDQ08512.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis
           2.10]
 gi|161388676|gb|EDQ13029.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis
           BS107]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 54/181 (29%), Gaps = 2/181 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            ++  L      +     +       ++   +    +   +  +          ++  F 
Sbjct: 76  AISIHLAQGALSQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGALKRSAEGLVVTSDGFT 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                       NV   A           +  +      +AG      L     N   ++
Sbjct: 136 VSPDITIPSDARNVSINADGEVYAYFDETAEGQLMGQLTLAGFANPKGLEALGSNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +  +    +     + + Y     V+   E++ LI+ ++ Y ++ K+I   D+M
Sbjct: 194 ETEASGAATVASPGENGLGTLRQGYLEASSVDAVREVTELIEAQRGYEMNAKVISAVDQM 253

Query: 472 L 472
           +
Sbjct: 254 M 254



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 31/150 (20%), Gaps = 28/150 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A         +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGTVL 62

Query: 47  PENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V      +    ++    L    + +      + +  +            S    
Sbjct: 63  PTGVQVGLGVRASAISIHLAQGALSQTGNDLDVAIDGKGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              L+ S E          +   +   ++ 
Sbjct: 117 DGALKRSAEGLVVTSDGFTVSPDITIPSDA 146


>gi|153834448|ref|ZP_01987115.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01]
 gi|156973589|ref|YP_001444496.1| flagellar basal body rod protein FlgG [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961601|ref|ZP_06175963.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3]
 gi|148869144|gb|EDL68176.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01]
 gi|156525183|gb|ABU70269.1| hypothetical protein VIBHAR_01292 [Vibrio harveyi ATCC BAA-1116]
 gi|269833642|gb|EEZ87739.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+       ++ S       +          +    ++        N  
Sbjct: 110 GNIGYTRNGQFTLDGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVSVRIRGEQNNV 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N   +L    S      +        I +S      VN+
Sbjct: 170 VVGQLTITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/229 (6%), Positives = 46/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      A+I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
               E            +  I   E+ +     +       ++  + +           +
Sbjct: 121 TLDGEGTLVTSGSGYPVEPEIVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQLTITDFV 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTE 229


>gi|90422996|ref|YP_531366.1| hypothetical protein RPC_1485 [Rhodopseudomonas palustris BisB18]
 gi|90105010|gb|ABD87047.1| protein of unknown function DUF1078-like [Rhodopseudomonas
           palustris BisB18]
          Length = 599

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/382 (12%), Positives = 103/382 (26%), Gaps = 13/382 (3%)

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           SK   ++   +K         T ++ A       N +   V       D       S + 
Sbjct: 225 SKNATAITGATKLSGASPSDSTNVNFAVGDTVKVNGTDIIVTASGGLDDGTHIPVDSTIT 284

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             L ++  ++      +                L  +S   G +++   +   VV T  G
Sbjct: 285 NLLGKIDALSGNNVTPSTVTGGGVVLHTGTAADLSIVSTSAGFASLGLTSPVTVVRTGGG 344

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
           +     V    N   ++       +     +G  V      A        +       + 
Sbjct: 345 SVGTGKVVGSDNQTFLDESISGGATTAYDGNGAPVPVQFRWAKTDSATLGVGHNDTWNLF 404

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPG------LFIADGIKDLDNKLCQGISETI 338
              N     A     +         N E  P         +      L N      +  +
Sbjct: 405 YQTNPAATGANTSWVNVGTNFSFGSNGEMNPVIGALTLTNLTVSGVSLGNVTMSFGTGGL 464

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   N    +              +++    ++  Y +  N +     VA  N   
Sbjct: 465 TQFADTNGNVQVNQMQQDGYAAGQLTSVSVSNEGRVVGAYSNGRNIDLAEVSVATFNGAN 524

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L     +   +   N S +        +  + +          ++ +E + LI  +Q+Y
Sbjct: 525 FLKRL--DGGAFEVTNESGAALFGKGGSISGSSL-----EASNTDIADEFTKLIVTQQAY 577

Query: 459 NISNKLIMFTDKMLQTLLEGVK 480
           + + K+I   + M+  LL  ++
Sbjct: 578 SANTKVITTANTMVSDLLNVIR 599



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/467 (10%), Positives = 94/467 (20%), Gaps = 38/467 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +      +       S    +I  NI N+    + R DT             Q + + 
Sbjct: 1   MGIFGALTTSVAGLRTQSYALENISGNIANSQTTAFKRIDTSFLDLIPQTGNDQQLAGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109
               +  +    ++    +        +   A                 +          
Sbjct: 61  TAKSRSTNTIQGSVQSASVSTYMAINGDGFFAVQKPGSFSDNNPVFTGVNNYTRRGDFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID           +  + Q     +                +
Sbjct: 121 DKNGYLVNGAGYYLQGVTIDRTTGNPSGGAPAILKFQNDFLPS---------------QQ 165

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            T ++      +      HD       LL+     +               T  G  +  
Sbjct: 166 TTKISYRANLASYPLTSKHDTSVPGSELLRPADFSVNPQVNGTQPPPFGDNTKSGLQVNS 225

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                I      S    S+S  +           G+ +       L       V      
Sbjct: 226 KNATAITGATKLSGASPSDSTNVNFAVGDTVKVNGTDIIVTASGGLDDGTHIPVDSTITN 285

Query: 290 LDEMARVLIGSFSEKDPIAGN-----SENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
           L      L G+      + G      +     L I        +         +      
Sbjct: 286 LLGKIDALSGNNVTPSTVTGGGVVLHTGTAADLSIVSTSAGFASLGLTSPVTVVRTGGGS 345

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 +            +      Y          F          G+  N T   + 
Sbjct: 346 VGTGKVVGSDNQTFLDESISGGATTAYDGNGAPVPVQFRWAKTDSATLGVGHNDTWNLFY 405

Query: 405 RNSIGWLEKNRSDSHDLHMKSQV-------VFNHISESYSNTVGVNL 444
           + +      N S  +     S         V   ++ +     GV+L
Sbjct: 406 QTNPAATGANTSWVNVGTNFSFGSNGEMNPVIGALTLTNLTVSGVSL 452


>gi|262396033|ref|YP_003287886.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
 gi|262339627|gb|ACY53421.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
          Length = 243

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 59  TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 118

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 119 EPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 176

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +  +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 177 TEASGPADELIAGEDGAGLIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 236



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 26/137 (18%), Gaps = 33/137 (24%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI------------------------SPENVTVVTQR 56
             +I  N+ N +   + R   +                               V VV  +
Sbjct: 1   MTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNEVPSGIQLGSGVRVVGTQ 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                         +  +    + Q F  ++                  +   + E    
Sbjct: 61  KV---FTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQIMYTRNGQFHVNSEGLMV 111

Query: 117 NLSEDILGKTVIDNAEE 133
           N     L   +      
Sbjct: 112 NSQGLPLEPQIQIPDNA 128


>gi|57237001|ref|YP_178802.1| flagellar basal body rod protein FlgG [Campylobacter jejuni RM1221]
 gi|86149818|ref|ZP_01068047.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86153387|ref|ZP_01071591.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88597119|ref|ZP_01100355.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121613571|ref|YP_001000394.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|148926663|ref|ZP_01810344.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157414985|ref|YP_001482241.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|167005337|ref|ZP_02271095.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205355540|ref|ZP_03222311.1| flagellar basaL body rod protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562337|ref|YP_002344116.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283956107|ref|ZP_06373594.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|57165805|gb|AAW34584.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni RM1221]
 gi|85839636|gb|EAQ56896.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85843113|gb|EAQ60324.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249438|gb|EAQ72398.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88190808|gb|EAQ94781.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360043|emb|CAL34835.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845182|gb|EDK22277.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157385949|gb|ABV52264.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205346774|gb|EDZ33406.1| flagellar basaL body rod protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|283792427|gb|EFC31209.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|284925954|gb|ADC28306.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747622|gb|ADN90892.1| Flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058161|gb|ADT72490.1| Flagellar basal-body rod protein flgG [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926812|gb|EFV06186.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315931897|gb|EFV10852.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 263

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +       F    + D      +    T        ++  +         +    +
Sbjct: 91  TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    +  
Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263



 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/208 (8%), Positives = 41/208 (19%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K   +  L + S+  +        F  ++             
Sbjct: 61  LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIE 157
                +     E    N     L   +               T +  +   + +      
Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|39998142|ref|NP_954093.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens
           PCA]
 gi|39985088|gb|AAR36443.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens
           PCA]
 gi|298507079|gb|ADI85802.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens
           KN400]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 4/184 (2%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            S    +      +          I+  D       + +   + Q R   S         
Sbjct: 81  FSEGNINQTGNELDIAIEGDGFFQIQMPDGTTTYSRAGSFKRDDQGRVVTSDGYPMLPEL 140

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      G    ++                +A  +    L    RN   + E + S
Sbjct: 141 VVPSNATSISVGNDGTVSVTQAGQTSPTNIGNIQLATFSNPSGLTALGRNL--FQESDSS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +       Q     +++ +     V++ EE+  +I  +++Y +++K +   D+MLQ   
Sbjct: 199 GTPTTGTPGQNGIGTLAQGFLEMSNVSVMEEMVNMIVGQRAYEVNSKAVQAADEMLQQAN 258

Query: 477 EGVK 480
              +
Sbjct: 259 NLRR 262



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 7/180 (3%), Positives = 33/180 (18%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +           +  N+ N +   + +                        
Sbjct: 1   MIRALWTAASGMQAQQTNIDVVANNLANVNTAGFKKSRADFQDLMYQNLKTSGAPSTSST 60

Query: 46  -SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + +       +  K   +  ++   + +        F  ++           +  
Sbjct: 61  QVPSGIQIGLGAKLAAVTKLFSEGNINQTGNELDIAIEGDGFFQIQ------MPDGTTTY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +   +          +   ++  +     +                      I 
Sbjct: 115 SRAGSFKRDDQGRVVTSDGYPMLPELVVPSNATSISVGNDGTVSVTQAGQTSPTNIGNIQ 174


>gi|251772412|gb|EES52979.1| flagellar basal-body rod protein FlgG [Leptospirillum
           ferrodiazotrophum]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 10/148 (6%), Positives = 23/148 (15%), Gaps = 28/148 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A +   +       I  N+ N +   Y R+                       
Sbjct: 1   MFRSLWNAASGMESQQANLDVITNNLANVNTTGYKRQRANFQDLMYQTMVPPGEASSLEG 60

Query: 46  --SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              P  + V                 L   ++ +        F  +              
Sbjct: 61  NQVPTGLQVGMGSRLASVQKVFLQGSLRTTNNPLDVAIQGNGFFTV------KLPDGRQA 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVI 128
                                     ++
Sbjct: 115 YTRDGTFNIDSHGRIVTPEGLTTDPQIV 142



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 2/189 (1%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               ++L  + +V +           +       F    + D      +  +  I  + +
Sbjct: 69  VGMGSRLASVQKVFLQGSLRTTNNPLDVAIQGNGFFTVKLPDGRQAYTRDGTFNIDSHGR 128

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             +      D   V  K   ++               S         +A       L   
Sbjct: 129 IVTPEGLTTDPQIVVPKTAKSIHVAPDGEVTATVAGQSAPVKLGQLVLAQFINPAGLSSR 188

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   ++E + S    L          +   +     VN+ EEL  ++  +++Y +   
Sbjct: 189 GNNL--FMETSASGKPTLSNPGVNGAGRLQSGFLEASNVNVAEELVNMVIGQRAYQMDAS 246

Query: 464 LIMFTDKML 472
            I   ++ML
Sbjct: 247 SIRTVNRML 255


>gi|153953785|ref|YP_001394550.1| hypothetical protein CKL_1160 [Clostridium kluyveri DSM 555]
 gi|219854401|ref|YP_002471523.1| hypothetical protein CKR_1058 [Clostridium kluyveri NBRC 12016]
 gi|146346666|gb|EDK33202.1| FlgE [Clostridium kluyveri DSM 555]
 gi|219568125|dbj|BAH06109.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 348

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 87/329 (26%), Gaps = 6/329 (1%)

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           I   I+N      +   +N            +        V  ++    + ++ I  +  
Sbjct: 22  IGNNIANSSTTAYKTQSMNFQDMISQNLSDPSAPSTSIGGVNGKQSGLGVQVAGISTDFT 81

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
              + T++    F                 TS+   I ID        G    +  I+A 
Sbjct: 82  TGSMGTTNRNLDFAIDGTGYFVVGTGKLGETSDDTGISIDEDNNILGGGDNEVENTIEAH 141

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                S     Q  L       +  +   D    N+  +  L         +       +
Sbjct: 142 YSRDGSFYLDTQGNLINQNGYRVMGYLVTDEN--NTSTITYLQNDTEDTFQNAVQFVDAN 199

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            T+          S         +       ++     +     DS         +    
Sbjct: 200 GTVTSVTDKLVPLSIPNYITKDDQLVKVKSFSVGKDGIITAQLTDSTTAVLGQIAMVSFQ 259

Query: 396 TNVTLLEYARNSIGWLEKNRS----DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
               L++   N       +              +   +  I++ +     V+L ++ + +
Sbjct: 260 NEGGLVKEGGNLYTTSSNSGQPIVMSGKGAENDNSAGYGKITQGFLEMSNVDLAQQFTDM 319

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I   +++  + K+I   D +L+ L+   +
Sbjct: 320 IVATRAFQANGKMITNGDTILEDLINLKR 348



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/296 (7%), Positives = 59/296 (19%), Gaps = 25/296 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           +L       +      Q+   I  NI N+    Y  +                  + S  
Sbjct: 1   MLPSMYSGISGLRANQQKLNVIGNNIANSSTTAYKTQSMNFQDMISQNLSDPSAPSTSIG 60

Query: 49  NVT------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            V        V     + +     +   +  +        +  +      +   +   + 
Sbjct: 61  GVNGKQSGLGVQVAGISTDFTTGSMGTTNRNLDFAIDGTGYFVVGTGKLGETSDDTGISI 120

Query: 103 YISKLRDSLESYSKNLSEDILGK-----TVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                           + +          +      + QN       +     +      
Sbjct: 121 DEDNNILGGGDNEVENTIEAHYSRDGSFYLDTQGNLINQNGYRVMGYLVTDENNTSTITY 180

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
           L+      F + +  V+      + +       +        ++ ++   S         
Sbjct: 181 LQNDTEDTFQNAVQFVDANGTVTSVTDKLVPLSIPNYITKDDQLVKVKSFSVGKDGIITA 240

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
            +  S    L +        E        +        G  +  +   A       
Sbjct: 241 QLTDSTTAVLGQIAMVSFQNEGGLVKEGGNLYTTSSNSGQPIVMSGKGAENDNSAG 296


>gi|38570330|gb|AAR24613.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni]
          Length = 263

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +       F    + D      +    T        ++  +         +    +
Sbjct: 91  TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    +  
Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/208 (8%), Positives = 40/208 (19%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   +                          
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKESRAEFADLMYQVMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K   +  L + S+  +        F  ++             
Sbjct: 61  LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114

Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                +     E    N     L              V    T +  +   + +      
Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|148976396|ref|ZP_01813102.1| flagellar basal body rod protein FlgG [Vibrionales bacterium
           SWAT-3]
 gi|145964219|gb|EDK29475.1| flagellar basal body rod protein FlgG [Vibrionales bacterium
           SWAT-3]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    + +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+  +    ++         +          +    ++        N  
Sbjct: 110 GETGYSRNGQFTLNGDGAIVTSGQGYPLQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNV 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N   +L    S      +       +I +S   T  VN+
Sbjct: 170 VVGQITITDFVNPGGLEPVGQNL--YLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 48/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    + +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107
                        +                         +     +     +      + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163
             + +       +    +  I   E+     V N    +  ++  + +           +
Sbjct: 121 TLNGDGAIVTSGQGYPLQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNVVVGQITITDFV 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNVTE 229


>gi|254227985|ref|ZP_04921415.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
 gi|151939481|gb|EDN58309.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25]
          Length = 261

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 77  TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +  +     I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGPADELIAGEDGAGLIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 31/155 (20%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +              +  +    + Q F  ++           
Sbjct: 61  EVPSGIQLGSGVRVVGTQKV---FTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQ 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                  +   + E    N     L   +      
Sbjct: 112 IMYTRNGQFHVNSEGLMVNSQGLPLEPQIQIPDNA 146


>gi|260437439|ref|ZP_05791255.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM
           2876]
 gi|292810071|gb|EFF69276.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM
           2876]
          Length = 284

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 75/279 (26%), Gaps = 12/279 (4%)

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
             + + +    N +   Y +        + + +     ++             G   ++ 
Sbjct: 17  TNVDVISNNLANVNSTGYKASTAEFKSLLYQTLQSRSTSANGDDKPIPAQVGTGARTAAI 76

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                    I +       +       L      ++ + +    +   ++          
Sbjct: 77  TTHFSQGSLIDSTSTFAFGLEGDGLFGLMNPDGEIVYTRNGDFTVGKTNDGGFM------ 130

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
              + +     + ++     Q+           +    F + V       +   H  +  
Sbjct: 131 ---ICSSDGYPVVDSDGNPIQFSGEYDVSNLVITSDGSFYYRVIEEKPDENGNMHKTERL 187

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD-SHDLHMKSQVVFNHISESYSNTVG 441
           +       V        L     +   + E   S  + +    +++    + +       
Sbjct: 188 DDLETRMGVFQFTNPSGLDSIGSSL--YKETEASGIAMEEGTYTELKRTKVCQGRLEASN 245

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V + +E+  LI  +++Y +++K I   D ML    +  +
Sbjct: 246 VQVADEMVNLIVAQRAYEMNSKAIQAADDMLGQANQLKR 284



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 44/227 (19%), Gaps = 28/227 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49
           ++     A +           I  N+ N ++  Y                  + S     
Sbjct: 1   MMRALYTAASGMIAQQTNVDVISNNLANVNSTGYKASTAEFKSLLYQTLQSRSTSANGDD 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                   T     +   +     L   +S             L                
Sbjct: 61  KPIPAQVGTGARTAAITTHFSQGSLIDSTSTFAFGLEGDGLFGLMN------PDGEIVYT 114

Query: 103 YISKLRDSLESYSKNL--SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                     +    +  S D       D            +  V          +  E 
Sbjct: 115 RNGDFTVGKTNDGGFMICSSDGYPVVDSDGNPIQFSGEYDVSNLVITSDGSFYYRVIEEK 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
            +    + +   ++D        +      LD     L K +E  GI
Sbjct: 175 PDENGNMHKTERLDDLETRMGVFQFTNPSGLDSIGSSLYKETEASGI 221


>gi|315636319|ref|ZP_07891569.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22]
 gi|315479408|gb|EFU70091.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 55/248 (22%), Gaps = 6/248 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                    +  ++      +     D          ++     +      +        
Sbjct: 11  GMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTTLNPTGIDVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN---PQYR 345
            +         +  +        +          I     +     +    +N       
Sbjct: 71  GVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNFKLNEEGTIVN 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   L+    V            G     +              +A       L     
Sbjct: 131 GNGYPLQPEIVVPNNVKDISVGTDGLVTAKDP-QTGDTIELGQITLADFINPAGLTPLGD 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +   +++   S        +   F  + +S   +  V L  E+  LI  +++Y  ++K I
Sbjct: 190 SL--FMQSEASGPVVEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLITAQRAYEANSKAI 247

Query: 466 MFTDKMLQ 473
              D ML 
Sbjct: 248 TTADNMLD 255



 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 29/241 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N    Q      NI N +   + +                        
Sbjct: 1   MIRGLYTAATGMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTT 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + V      +       +  L +  + +      + F  +            +  
Sbjct: 61  LNPTGIDVGLGVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQI------TLPSGETAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + E    N +   L     V +N +++    +           D  +  ++ 
Sbjct: 115 SRNGNFKLNEEGTIVNGNGYPLQPEIVVPNNVKDISVGTDGLVTAKDPQTGDTIELGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           +++         + +       AS                K S +   +  + N    ++
Sbjct: 175 LADFINPAGLTPLGDSLFMQSEASGPVVEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLI 234

Query: 220 Y 220
            
Sbjct: 235 T 235


>gi|260767767|ref|ZP_05876702.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972]
 gi|260617276|gb|EEX42460.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972]
 gi|315179401|gb|ADT86315.1| flagellar basal body rod protein FlgG [Vibrio furnissii NCTC 11218]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 3/178 (1%)

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + +  + +    E      I     ++        +           +   L+  
Sbjct: 81  HTHGNAQTTTNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNDEGVIVTSGSGYPLQPE 140

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             +    +       G   +        N+               L    +N   +L   
Sbjct: 141 IVIPDDAISITVGNDGEVSVRVR-GQQDNQVLGQITTVDFINPGGLEPIGQNL--YLPTG 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            S      +       ++ +S   +  VN+ EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 198 ASGDPQEGVPGLDGLGNVRQSMLESSNVNVTEELVNMIEAQRVYEMNSKVISAVDKMM 255



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/226 (7%), Positives = 48/226 (21%), Gaps = 20/226 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQR-- 56
               ++   +      A+I  N+ NA    + +   +           P   +       
Sbjct: 4   ALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELP 63

Query: 57  -----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110
                     +                         +        + +       +   +
Sbjct: 64  SGLMLGAGSKVVATQKVHTHGNAQTTTNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLN 123

Query: 111 LESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            E            +  I   ++     V N    +  V+  + +        +  +   
Sbjct: 124 DEGVIVTSGSGYPLQPEIVIPDDAISITVGNDGEVSVRVRGQQDNQVLGQITTVDFINPG 183

Query: 167 LSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 184 GLEPIGQNLYLPTGASGDPQEGVPGLDGLGNVRQSMLESSNVNVTE 229


>gi|330889080|gb|EGH21741.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 100

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +  +       A       L     N   +LE   S +  +            ++     
Sbjct: 4   ATPQIIGNIQTADFINPAGLQAIGGNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENS 61

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            V+  EEL  +I  +++Y +++K+I   D+MLQ L +
Sbjct: 62  NVSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQ 98


>gi|291334032|gb|ADD93707.1| flagellar basal body FlaE domain protein [uncultured marine
           bacterium MedDCM-OCT-S04-C749]
          Length = 210

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
           G   +   Y    +       +   + N  L E           ++S + +L   + + +
Sbjct: 105 GDGRIEASYGTEVSYPVSTVALGVFSNNNGLKELGGGIYAQ--TDKSGAVNLGAPADLGY 162

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +         VN+ +EL+ +IK +Q +N S +L+    +M++ L
Sbjct: 163 ASLKSGGLEASNVNITDELTAMIKAQQQFNGSARLMQTNSEMVEKL 208


>gi|163802601|ref|ZP_02196493.1| polar flagellar FlgG [Vibrio sp. AND4]
 gi|159173684|gb|EDP58503.1| polar flagellar FlgG [Vibrio sp. AND4]
          Length = 262

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    A +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+       ++ S       +          +    ++        N  
Sbjct: 110 GNIGYTRNGQFTLDGEGTLVTSGSGYAVEPEIVIPEDAISITVGTDGEVSVRVRGEQNNV 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N   +L    S      +        I +S      VN+
Sbjct: 170 VVGQLTITDFVNPGGLEPIGQNL--YLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 30/159 (18%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      A+I  N+ NA    + +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               E            +  I   E+ +     +  EV 
Sbjct: 121 TLDGEGTLVTSGSGYAVEPEIVIPEDAISITVGTDGEVS 159


>gi|307718428|ref|YP_003873960.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192]
 gi|306532153|gb|ADN01687.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192]
          Length = 264

 Score = 68.1 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEY 403
            SN   L     + + F+ +   ++    +        +        +        LL  
Sbjct: 130 TSNGYRLIPEIVLPEGFIADTLAVSEDGRVTVKVPGQDDPVEVGQIQLYRFVNPAGLLAV 189

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   +   N S               +   +     V++  E+  +I  +++Y +++K
Sbjct: 190 GDNL--YKVTNASGDPIGGRPGFDGMGKLLHKFLEMSNVSVVNEMVEMIVAQRAYELNSK 247

Query: 464 LIMFTDKMLQTLLEGVK 480
            +  +D ML T +   +
Sbjct: 248 AVQTSDSMLGTAVNLKR 264



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/156 (5%), Positives = 29/156 (18%), Gaps = 27/156 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A +          ++  N+ N +   + +                        
Sbjct: 1   MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60

Query: 47  -----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +    V   + +K      L    +        + F  +        +      
Sbjct: 61  VVPTPTQVGHGVRVAASSKIFTQGALQHTDNVSDLAIQGEGFFRVL------LYDGTYAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                 +          +   L   ++     +   
Sbjct: 115 TRDGSFKIDSNGQLVTSNGYRLIPEIVLPEGFIADT 150


>gi|89072313|ref|ZP_01158892.1| putative flagellar basal-body rod protein [Photobacterium sp.
           SKA34]
 gi|89051845|gb|EAR57297.1| putative flagellar basal-body rod protein [Photobacterium sp.
           SKA34]
          Length = 261

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYAR 405
           N   L     +      N  ++     +      D   +      +A       L     
Sbjct: 130 NGQGLPLQPQIQIPEEANTISIGVDGIVTATLAGDPQPQELGQITLAKFINPAGLEAVGG 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   + E   S      +        + +       V + EE+  +I  +++Y ++ K++
Sbjct: 190 NL--YKETQASGQPQEMIAGIDGAGSLKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVV 247

Query: 466 MFTDKML 472
              D ML
Sbjct: 248 SAADDML 254



 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/154 (7%), Positives = 30/154 (19%), Gaps = 27/154 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                      +    +   F  ++              
Sbjct: 61  QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIEN------SDGEVMF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
               +   + E    N     L   +    E   
Sbjct: 115 SRNGQFHVNSEGLMVNGQGLPLQPQIQIPEEANT 148


>gi|218703527|ref|YP_002411046.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026]
 gi|218430624|emb|CAR11490.1| Flagellar basal-body rod protein (flgG-like) (Distal rod protein)
           [Escherichia coli UMN026]
          Length = 303

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 52/191 (27%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            F + +  +      +    +                 ++  +  +       + VN   
Sbjct: 109 QFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADG 168

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               S                    G    +       +       +  +N        A
Sbjct: 169 VLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSA 228

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
                +LE   S      +  +     + ++      V++  E+  +I V+++Y ++ K+
Sbjct: 229 EGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKM 288

Query: 465 IMFTDKMLQTL 475
           +   D MLQ +
Sbjct: 289 VSAADDMLQYI 299



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 29/243 (11%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------- 45
           ++ A    ++   +    + ++I  NI N +   + R   M                   
Sbjct: 42  TMNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQN 101

Query: 46  --SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              P  +   +            +  +    +A+    + Q F  ++          +  
Sbjct: 102 NIMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIA 155

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                 L+ + +    N     L   +   A      F         +  D+D     ++
Sbjct: 156 YTRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQL 215

Query: 161 SNLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           + +            ++      AS         +  +   + + + G +  + N    +
Sbjct: 216 TLVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAM 275

Query: 219 VYT 221
           +  
Sbjct: 276 ITV 278


>gi|212637787|ref|YP_002314312.1| flagellar basal body rod protein [Shewanella piezotolerans WP3]
 gi|212559271|gb|ACJ31725.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3]
          Length = 261

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 53/206 (25%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++    ++   +      ++    +V             +       F      + 
Sbjct: 51  QPGGQVDEQNELPSGLQLGTGTRVVGTQKVFTSGDMLTTNQQLDLAIEGQGFFQIEESNG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D    +             ++            +    +               +  +  
Sbjct: 111 DLSFSRDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTITIATDGIVSAQMAGQADAQEL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S +    +        I +       VN+ E
Sbjct: 171 GQITLVNFTNPAGLEARGNNL--YRETGASGAAIEGVAGDQALGQIRQGALEGANVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 55/242 (22%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R            +   +  +      Q F  ++E             
Sbjct: 61  ELPSGLQLGTGTRVVGTQKVFTSGDMLTTNQQLDLAIEGQGFFQIEESNGDLSFS----- 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   + E          L   +    E +     T      ++   AD +   +I+
Sbjct: 116 -RDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTITIATDGIVSAQMAGQADAQELGQIT 174

Query: 162 NLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            N+  +   AS          + +   +   + G +  V      ++
Sbjct: 175 LVNFTNPAGLEARGNNLYRETGASGAAIEGVAGDQALGQIRQGALEGANVNVVEEMVEMI 234

Query: 220 YT 221
            T
Sbjct: 235 ST 236


>gi|269836597|ref|YP_003318825.1| hypothetical protein Sthe_0565 [Sphaerobacter thermophilus DSM
           20745]
 gi|269785860|gb|ACZ38003.1| protein of unknown function DUF1078 domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 259

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L    +N         S    +       F  +         V+L
Sbjct: 166 EVGRITLARFANPQGLAAAGQNRFA--ATVASGPPQVGTPGADGFPALQSGALEASTVDL 223

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKM 471
            E+++ LI+ +++Y ++ + +   D+M
Sbjct: 224 AEQMTTLIEAQRAYTVNARALQTLDEM 250



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 34/172 (19%), Gaps = 28/172 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           + +++    N       +  ++  N+ N     +                          
Sbjct: 1   MTSLYATGANGLRVQQARLDAVANNVANLGTTGFKAARVDMVDMPPQPLEVARAGGAADP 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                E VT+       +           + +    L  +                +   
Sbjct: 61  VTEIGEGVTIGGISRVFEP---GTPRPTGNPLDVAILGPNTF-----FVLTTPDGQTLYT 112

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
              + R          + D L   +       V       R +  +  + + 
Sbjct: 113 RDGQFRPDSTGQLVTPAGDRLSPPITLPPGASVTEVTPEGRILATLPGEVNP 164


>gi|213421609|ref|ZP_03354675.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 147

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 2/146 (1%)

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                      +    Q     + +    +  K        +     ++ +Y +   +  
Sbjct: 4   GATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVL 63

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +A    N  L     N   W     S    L       F  ++        V+L +
Sbjct: 64  GQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSK 121

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           EL  +I  +++Y  + + I   D++L
Sbjct: 122 ELVNMIVAQRNYQSNAQTIKTQDQIL 147


>gi|291518270|emb|CBK73491.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 75/269 (27%), Gaps = 6/269 (2%)

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                   G  +      +           +  +    +    + +   +A  + K  + 
Sbjct: 6   WSGASGMKGQQVQVDTIANNLANVNTMAYKSQSAQFKTLLYQTLEAESTNAQGETKPTSA 65

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                + V        +  ++   S +    I      V         ++ +     G +
Sbjct: 66  QVGLGTRVASLNANFTQGPQMANDSKTAMCIIGEGFFAVQDGEETHYTRNGNFTWAIGPT 125

Query: 336 ETICVNPQYRS---NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
               +         + +        +   L    N+            +  +      + 
Sbjct: 126 GDKVLTTSDGYQVLDQAGRPITLPRTAGELGFAVNIDDGSCSYKDQAGNIIRTGQSIALY 185

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFL 451
                V L +   N   + E + S         + V  + I++ Y     VN+ +E+  L
Sbjct: 186 QFTNRVGLNKIGENL--YDESDASGEPISEWNTAGVTRSQIAQGYLEGSNVNVADEMVNL 243

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I  +++Y +++K I  +D ML+      +
Sbjct: 244 IIAQRAYEMNSKAITTSDTMLEQANNLKR 272



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 48/224 (21%), Gaps = 14/224 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PEN 49
           ++       +       Q  +I  N+ N +   Y  +                     E 
Sbjct: 1   MVRSLWSGASGMKGQQVQVDTIANNLANVNTMAYKSQSAQFKTLLYQTLEAESTNAQGET 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                Q      +     +             +   + E   A      +          
Sbjct: 61  KPTSAQVGLGTRVASLNANFTQGPQMANDSKTAMCIIGEGFFAVQDGEETHYTRNGNFTW 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           ++      +     G  V+D A   +     +A E+       D     +        + 
Sbjct: 121 AIGPTGDKVLTTSDGYQVLDQAGRPITLPR-TAGELGFAVNIDDGSCSYKDQAGNIIRTG 179

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
            ++       +        +  D+ D   + ISE          
Sbjct: 180 QSIALYQFTNRVGLNKIGENLYDESDASGEPISEWNTAGVTRSQ 223


>gi|303328380|ref|ZP_07358818.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3]
 gi|302861710|gb|EFL84646.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3]
          Length = 261

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           +++    +     +         P+        L    RN         S +    +   
Sbjct: 149 SISSTGHIAALDSEGQEIAGAEIPLYTFINPAGLDARGRNLYTP--TEASGAETEGVPGT 206

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                +++ +     V + +E+  +I  +++Y +++K I  +D ML   ++  +
Sbjct: 207 DNVGTLAQGFLEMSNVEVVDEMVNMIVGQRAYEVNSKAIQTSDSMLGMAVQLKR 260



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 50/238 (21%), Gaps = 31/238 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++                   I  N+ N +   + +                        
Sbjct: 1   MMRSLYTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMKIAGSITEGDN 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           +A+        F  +       D       
Sbjct: 61  RLPVGIQVGMGVRPTAVHKFFTQGDFQNTGNALDVAVEGDGFFQV-------DVNGELMY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA--REVQKIRADADKEIELE 159
                 + + +      +  IL       AE    + +++     +     +        
Sbjct: 114 TRAGSFKLNQDGTVVTANGYILQPEFAVPAETKNISISSTGHIAALDSEGQEIAGAEIPL 173

Query: 160 ISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            + +     +    N       + ++ +     D    L Q   E+  +  +    N 
Sbjct: 174 YTFINPAGLDARGRNLYTPTEASGAETEGVPGTDNVGTLAQGFLEMSNVEVVDEMVNM 231


>gi|315124200|ref|YP_004066204.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017922|gb|ADT66015.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 263

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 2/175 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +       F    + D      +    T        ++  +         +    +
Sbjct: 91  TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 150

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    +  
Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVRFINPAGLHSMGDNL--YLETGASGAPVAGIAG 208

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/208 (8%), Positives = 41/208 (19%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K   +  L + S+  +        F  ++             
Sbjct: 61  LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIG 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIE 157
                +     E    N     L   +               T +  +   + +      
Sbjct: 115 YTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVRFINPAGLHSMGDNLYLETGASGAP 202


>gi|209695760|ref|YP_002263690.1| flagellar basal body rod protein FlgG [Aliivibrio salmonicida
           LFI1238]
 gi|208009713|emb|CAQ80017.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Aliivibrio salmonicida LFI1238]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 3/185 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +++    +V     ++      +       F    + D +    +    T+       + 
Sbjct: 72  SKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQITMPDGNLGYSRNGQFTLNSEGAMVTT 131

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN-FIFDPVAGINTNVTLLEYARN 406
            S       +          +    ++        +                 L    +N
Sbjct: 132 GSGYPLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQITTVDFINPGGLEPVGQN 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +L    S               I +S      VN+ EEL  +I+ ++ Y +++K+I 
Sbjct: 192 L--YLPTGASGDPQEGTPGLEGLGAIRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVIS 249

Query: 467 FTDKM 471
             DKM
Sbjct: 250 AVDKM 254



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/203 (6%), Positives = 43/203 (21%), Gaps = 19/203 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61
           +      ++   +      A+I  N+ NA    + +   +      +NV     +S    
Sbjct: 1   MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60

Query: 62  -------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +        +                +        + +       + 
Sbjct: 61  ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQITMPDGNLGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       ++  + +        +  +
Sbjct: 121 TLNSEGAMVTTGSGYPLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQITTVDFI 180

Query: 164 RRFLSELTVVNDAIKFKTASKHD 186
                E    N  +    +    
Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQ 203


>gi|149188068|ref|ZP_01866363.1| polar flagellar FlgG [Vibrio shilonii AK1]
 gi|148838056|gb|EDL54998.1| polar flagellar FlgG [Vibrio shilonii AK1]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 69/208 (33%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    ++     ++    + +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKIHTPGNAQTTTNSLDMMIEGDGFFQVLMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+       ++ S       ++         +    ++        +  
Sbjct: 110 GNIGYSRNGQFTLNDEGTIVTSGSGYALEPEIAIPEDAISITVGTDGEVSVRVRGQQDNQ 169

Query: 386 FIFDPVA-GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            + +           L    +N   +L    S   +  +     F  I +S   T  VN+
Sbjct: 170 VVGNITTVDFINPGGLEPIGQNL--YLPTGASGDPNEGVPGLDGFGQIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/229 (6%), Positives = 49/229 (21%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTIGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKIHTPGNAQTTTNSLDMMIEGDGFFQVLMPDGNIGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       V+  + +        +  +
Sbjct: 121 TLNDEGTIVTSGSGYALEPEIAIPEDAISITVGTDGEVSVRVRGQQDNQVVGNITTVDFI 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +   ++    LD    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPNEGVPGLDGFGQIRQSMLETSNVNVTE 229


>gi|319787119|ref|YP_004146594.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465631|gb|ADV27363.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis
           11-1]
          Length = 261

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 2/213 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G   A  Q+   +      ++   A+       ++   A +       F    + D 
Sbjct: 51  QPGGSTSAQTQLPSGLQLGTGVRVVSTAKDFQQGNPQQTGRALDVMINGRGFFEVLMPDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +   +  S  +    +  ++  +    G    +   ++         +    D      
Sbjct: 111 TSAYTRDGSFQVNAQGELVTSSGYPVQPGIQVPEGAQSMTIGTDGTITVQMAGDGQALEI 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   ++E   S               + +       VN+ E
Sbjct: 171 GALTLTDFINPAGLQARGENL--YMETTASGPAQNGTPGLNGLGLVEQGALEGSNVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           EL  +I+ +++Y ++ K I  TD ML  L   V
Sbjct: 229 ELVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/164 (9%), Positives = 38/164 (23%), Gaps = 15/164 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54
           +      A+   +    + + +  N+ N +   + R                  + +  T
Sbjct: 1   MNQALWVAKTGLDAQQTRMSVVANNLANTNTTGFKRDRANFEDLLYQQVRQPGGSTSAQT 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-------DHYNNSPTHYISKL 107
           Q      +   V    ++   QQ   Q      ++M               S        
Sbjct: 61  QLPSGLQLGTGVRVVSTAKDFQQGNPQQTGRALDVMINGRGFFEVLMPDGTSAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
           + + +      S   +   +            T      ++  D
Sbjct: 121 QVNAQGELVTSSGYPVQPGIQVPEGAQSMTIGTDGTITVQMAGD 164


>gi|193222346|emb|CAL62046.2| Flagellar basal-body rod protein FlgG (Distal rod protein)
           [Herminiimonas arsenicoxydans]
          Length = 260

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           + D      +  S       Q  ++  F         +   ++         +     + 
Sbjct: 107 MPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQPAITIPENATSITISRDGIVSVTVSGTTA 166

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                   +A       L+    N   ++E   S + + +         + ++Y  T  V
Sbjct: 167 ATEIGALQLATFINPAGLMSRGENL--YVETTASGTANTNTPGSNGAGLLKQNYVETSNV 224

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           N+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 225 NVVEELVSMIQTQRAYEINSKAITTSDQMLQRLTQI 260



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/262 (8%), Positives = 55/262 (20%), Gaps = 34/262 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++   +    Q   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWISKTGLDAQQTQMDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   S+A         F  +            
Sbjct: 61  ELPSGLQLGTGVRPVATERIH---TQGNLQLTSNAKNLAIEGDGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        +   +      S     +  I   E       +    V    +      E+
Sbjct: 112 TAYTRDGSFQTDNQGQMVTSSGFP-IQPAITIPENATSITISRDGIVSVTVSGTTAATEI 170

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               L  F++   +++        +        +        + +   + T   N  + +
Sbjct: 171 GALQLATFINPAGLMSRGENLYVETTASGTANTNTPGSNGAGLLKQNYVETSNVNVVEEL 230

Query: 219 VYTSDGTTLFETVPRDINFEKM 240
           V        +E   + I     
Sbjct: 231 VSMIQTQRAYEINSKAITTSDQ 252


>gi|169831888|ref|YP_001717870.1| flagellar basal body rod protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638732|gb|ACA60238.1| flagellar basal body rod protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 246

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/198 (8%), Positives = 45/198 (22%), Gaps = 16/198 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +       +  ++  NI N +   + R+  +     +      ++      
Sbjct: 1   MIRGVYTAASGMLAGQTRLDAVAHNIANVNTTGFRRQVPVFAPYLQTAVGRHEKRVTPIG 60

Query: 63  FDKVLH--------AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
              +               + Q           E     +             +      
Sbjct: 61  TTSLGTVPTALVTDLTGGPVVQTGRTMDLALEGEGFFTVEREGQQLYTRAGSFKVDASGI 120

Query: 115 SKNLSEDIL--------GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
               + D +                    + F+++  E+ ++R  A    E  +     +
Sbjct: 121 LVTRAGDPVLGERGPLKVGHDGFTVSADGRVFSSTGEELDRLRLTALPGRETWVRTPDGY 180

Query: 167 LSELTVVNDAIKFKTASK 184
           L        AI  +    
Sbjct: 181 LMTGEATAPAINTRVHQG 198



 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            W+             +  +   + + Y     V+L  EL  L+   + Y  + ++    
Sbjct: 172 TWVRTPDGYLMTGEATAPAINTRVHQGYLEGSNVHLAVELVDLLLASRLYAANQRVARTQ 231

Query: 469 DKMLQTLLEGV 479
           D +++  +  V
Sbjct: 232 DTLVEKAINQV 242


>gi|114706771|ref|ZP_01439671.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506]
 gi|114537719|gb|EAU40843.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506]
          Length = 260

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 47/240 (19%), Gaps = 34/240 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     T                     
Sbjct: 3   ALAIAATGMNAQETNVEVIANNIANVNTTGFKRARAEFTDLLYQVERAKGVAAAGAEGVV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V +   R+ +       L    + +      + +  ++             
Sbjct: 63  PEGAQLGLGVRLAAIRNVH---LQGALKETGNKLDLALNGEGWFQIQ------GPGGAIR 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + E     L   ++   +   A       N + +   ++  +     +L +
Sbjct: 114 YTRDGAFNTNAEGQIVTLDGYLVDPELTVPANTSEIVVNEAGQVYARVEGELQDVGQLTL 173

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           +             +      AS              +     +   +         ++ 
Sbjct: 174 ATFANNAGLHAEGGNLFSETVASGAPVVGVPGDPGYGVVHQGYLEDSNVDPVKEISELIS 233



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 2/113 (1%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                  + +      +    +   ++     +A    N  L     N     E   S +
Sbjct: 141 TVPANTSEIVVNEAGQVYARVEGELQDVGQLTLATFANNAGLHAEGGNLFS--ETVASGA 198

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + +     +  + + Y     V+  +E+S LI  +++Y +++K+I   D+M
Sbjct: 199 PVVGVPGDPGYGVVHQGYLEDSNVDPVKEISELISAQRAYEMNSKIISAADEM 251


>gi|294853175|ref|ZP_06793847.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026]
 gi|294818830|gb|EFG35830.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026]
          Length = 210

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 9/191 (4%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLF-IADGIKDLDNKLCQGISETICVNPQYRS 346
             L  +        +     + N    P    +                 T        +
Sbjct: 13  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 72

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF------IFDPVAGINTNVTL 400
           +   +   G+  +  +    +             +  ++           +A       L
Sbjct: 73  DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 132

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S    + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 133 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 190

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 191 NSKVIQAADEM 201


>gi|289679029|ref|ZP_06499919.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5]
          Length = 279

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/266 (9%), Positives = 47/266 (17%), Gaps = 13/266 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     S   G    L       +      +                E Y  N S
Sbjct: 62  TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV         +  +R +A        S +    +  +        
Sbjct: 121 NMKLQGYNVDANGSVVT------GALSDLRVNASNLDPKATSTITNSANLNSTTPLPTVA 174

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +                       +                                
Sbjct: 175 TFDATDTKSYNNKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTAPD 234

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGS 265
            N  T  S  N +   G  V ++  +
Sbjct: 235 KNDLTFDSSGNLVTTAGAAVPTDSAN 260


>gi|328545505|ref|YP_004305614.1| flagellar basal-body rod protein FlgG [polymorphum gilvum
           SL003B-26A1]
 gi|326415246|gb|ADZ72309.1| Flagellar basal-body rod protein FlgG [Polymorphum gilvum
           SL003B-26A1]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 38/184 (20%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        I  NI N +   Y R     +                     
Sbjct: 3   ALAIAATGMSAQQLNVEVIANNIANMNTTAYKRARAEFSDLLYQAERLQGVPNRGGEDPV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L    + +      + +  +            + 
Sbjct: 63  PEGAQLGLGVKTAAIRKLH---MQGTLTNTDNKLDLAIDGRGWFQV------TGPEGETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + E     L    +   ++   + V    N S +   ++  + +     ++
Sbjct: 114 YTRAGSFNKNAEGRLVTLDGYGIEPAILFPPDTVDIIINESGQVFAQVAGELNPRELGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 ALTN 177



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 60/224 (26%), Gaps = 8/224 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                   +++ +             QL    +              N++N   L I   
Sbjct: 41  SDLLYQAERLQGVPNRGGEDPVPEGAQLGLGVKTAAIRKLHMQGTLTNTDNKLDLAIDGR 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV------SKKFLWNVKNLAGYPDLIN 376
                         T   +    +    +   G              ++           
Sbjct: 101 GWFQVTGPEGETLYTRAGSFNKNAEGRLVTLDGYGIEPAILFPPDTVDIIINESGQVFAQ 160

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
              +   +      +     +V L     N   + E   S      +     F  I + Y
Sbjct: 161 VAGELNPRELGQLALTNFANDVGLEPVGGNL--FRETPASGIGLDGVAGDPGFGVIRQGY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                V+  +E++ LI  ++ Y +++K+I   D M  T+ +G++
Sbjct: 219 QEASNVDPVKEITELISAQRGYEMNSKVIQAADDMAGTVTKGIR 262


>gi|307546966|ref|YP_003899445.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581]
 gi|307218990|emb|CBV44260.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581]
          Length = 260

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  S  +  N Q  +   +  +   +  +   +V    
Sbjct: 94  DLAINGKGFFQVRMPDGTTAYTRDGSFQLDENGQMVTANGYPLEPAIIIPQNALSVSIGE 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                I     S +       V+       L     N   + E   S   +  +      
Sbjct: 154 DGIVSITEPGSSESNEVGQISVSSFVNPTGLESIGGNL--YRETTASGPRNEGIPGMNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +S+ Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML  L + 
Sbjct: 212 GRLSQGYVETSNVNVVEEMVGMIQTQRAYEINSKAVQTSDEMLARLTQL 260



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 30/150 (20%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+    +   +   I  N+ N +   + R   +                    
Sbjct: 1   MINSLWTAKTGLESQQVKLDVISNNLANVNTNGFKRSRAVFEDLLYQNLRQPGAQNNVQN 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + V T       +  + LH                  K           +     
Sbjct: 61  RLPSGMQVGTGVR---PVATERLHTQGGLENTGNSRDLAINGKGFFQVRMPDGTTAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +          +   L   +I     +
Sbjct: 118 GSFQLDENGQMVTANGYPLEPAIIIPQNAL 147


>gi|157738176|ref|YP_001490860.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018]
 gi|157700030|gb|ABV68190.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 55/248 (22%), Gaps = 6/248 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                    +  ++      +     D          ++     +      +        
Sbjct: 11  GMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTTLNPTGIDVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN---PQYR 345
            +         +  +        +          I     +     +    +N       
Sbjct: 71  GVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNFKLNEEGTIVN 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   L+    V            G     +              +A       L     
Sbjct: 131 GNGYPLQPEIVVPNNVKDISVGTDGLVTAKDP-QTGDTIELGQITLADFINPAGLTPLGD 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +   +++   S        +   F  + +S   +  V L  E+  LI  +++Y  ++K I
Sbjct: 190 SL--FMQSEASGDVIEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLITAQRAYEANSKAI 247

Query: 466 MFTDKMLQ 473
              D ML 
Sbjct: 248 TTADNMLD 255



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 29/241 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N    Q      NI N +   + +                        
Sbjct: 1   MIRGLYTAATGMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTT 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + V      +       +  L +  + +      + F  +            +  
Sbjct: 61  LNPTGIDVGLGVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQI------TLPSGETAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + E    N +   L     V +N +++    +           D  +  ++ 
Sbjct: 115 SRNGNFKLNEEGTIVNGNGYPLQPEIVVPNNVKDISVGTDGLVTAKDPQTGDTIELGQIT 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           +++         + +       AS                K S +   +  + N    ++
Sbjct: 175 LADFINPAGLTPLGDSLFMQSEASGDVIEGDPTTEQFGSLKQSMLESSNVKLVNEMVDLI 234

Query: 220 Y 220
            
Sbjct: 235 T 235


>gi|153001470|ref|YP_001367151.1| flagellar basal body rod protein FlgG [Shewanella baltica OS185]
 gi|151366088|gb|ABS09088.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS185]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGVSSSNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEISVKTPGTAD 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLTMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 57.0 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                S N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   +       ++  E+ 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEIS 159


>gi|126175144|ref|YP_001051293.1| flagellar basal body rod protein FlgG [Shewanella baltica OS155]
 gi|217972600|ref|YP_002357351.1| flagellar basal body rod protein FlgG [Shewanella baltica OS223]
 gi|304409976|ref|ZP_07391595.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183]
 gi|307302311|ref|ZP_07582069.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175]
 gi|125998349|gb|ABN62424.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155]
 gi|217497735|gb|ACK45928.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS223]
 gi|304351385|gb|EFM15784.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183]
 gi|306914349|gb|EFN44770.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                 G   +  ++ + +      ++    ++           + +       F    +
Sbjct: 48  TVNQAGGVSSSNTKLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQL 107

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSF 382
            D      +    T+    Q  +  S      +++         ++   ++       + 
Sbjct: 108 PDGTAAYTRNGQFTLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVSVKTPGTAD 167

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N+      +        L    +N         S +      S      I +    T  V
Sbjct: 168 NQVVGQLTMTDFINPSGLDPMGQNLYTETG--ASGTPIQGTASLDGMGAIRQGALETSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           N+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 226 NVTEELVNLIESQRIYEMNSKVISAVDQML 255



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 31/159 (19%), Gaps = 15/159 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    Y +   +                S N 
Sbjct: 1   MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNT 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                          + +  I   +       ++  EV 
Sbjct: 121 TLDDTGQIVTPGSGYVLQPAITIPDNATSITVSAEGEVS 159


>gi|309779449|ref|ZP_07674210.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA]
 gi|308921690|gb|EFP67326.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA]
          Length = 260

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 59/178 (33%), Gaps = 2/178 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S  I    Q  ++  +       
Sbjct: 82  TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAVT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +       N       +A       L     N     E   S 
Sbjct: 142 VPQNATSLTIGKDGVVTVTTPGTVNNTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +L          ++++Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML+ L
Sbjct: 200 TANLANPGSNGVGALNQNYVETSNVNVVEEMVNMIQTQRAYEINSKSVQTSDQMLEKL 257



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/255 (8%), Positives = 57/255 (22%), Gaps = 29/255 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++   +    Q   I  N+ N +   + R   +                   T
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    ++         F  ++              
Sbjct: 61  TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + +      S   +    TV  NA  +    +           +  +    +
Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAVTVPQNATSLTIGKDGVVTVTTPGTVNNTQVGTFQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++N        ++  +      AS            V     + +   +  V      ++
Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLANPGSNGVGALNQNYVETSNVNVVEEMVNMI 234

Query: 220 YTSDGTTLFETVPRD 234
            T     +     + 
Sbjct: 235 QTQRAYEINSKSVQT 249


>gi|283477482|emb|CAY73398.1| Flagellar hook-filament junction protein 1 [Erwinia pyrifoliae DSM
           12163]
          Length = 113

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----------NVTVVT 54
            +FN A++  +++    + I  NI NA N +Y RRD +   S             V V  
Sbjct: 2   NLFNIARSGLSSSQAGLSVIGSNINNAMNGHYSRRDILLGESGGMISGKGFYGFGVQVNG 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +       +  L    +A    +      A  + M  +D  N S +
Sbjct: 62  VQRGYDAFINNELRGGITACAGHKTRYEQLAEIDNMLGNDETNPSVS 108


>gi|322380410|ref|ZP_08054616.1| flagellar hook protein FlgE [Helicobacter suis HS5]
 gi|321147200|gb|EFX41894.1| flagellar hook protein FlgE [Helicobacter suis HS5]
          Length = 601

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 118/403 (29%), Gaps = 19/403 (4%)

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
           E    D++       ++++  ++L +      +  + + +      +V+         + 
Sbjct: 208 EEYFLDENGEVITNRFLNQDANALANSDNEPLDLAMHRNLEIM---IVKGDMAQDLTFKY 264

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                +K     + +L+  L     ++  I      +  +   L  ++    + +  IG 
Sbjct: 265 GTGGPEKNEFHTLGDLKNLLKSKANLDLTIAKSKPDQVISPLMLQIKNPSDPEATLFIGG 324

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI-------DGVVVS 260
               +                ++V   I F    +       +   +       +     
Sbjct: 325 QMAEKLGWVASGMILKKGETRDSVNIRIPFYSTTTEIYDKAGDKYLLKSDFFMTNSKDPM 384

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           +   +        ++L++RD      +     +     G    K PI  N +  P ++  
Sbjct: 385 ATPPTEQKWDVESSILEMRDKTPITPKPVRQTITFDQAGKMQSK-PITLNFKGNPLVYSI 443

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
           +   D ++         I    Q       LR+        +    +      +      
Sbjct: 444 NKSDDFESSDVPYEDSRIYQVSQDGKPKGILRNMRIDDDGIIHLSFSNGAIETMGRVGIA 503

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---MKSQVVFNHISESYS 437
           +F  +     V        L + +  +        S +  L       ++ F  I   Y 
Sbjct: 504 AFTNDQGLKKVG-----SNLFDISNATRNGRAVPLSGNPILGWDRDDGKLKFGKIMHKYL 558

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            T  VN    L+ LI +++ Y+++ K     D +++  +   K
Sbjct: 559 ETSNVNAGRSLTNLILMQRGYSMNAKAFTTGDDLIKEAINLKK 601



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 35/171 (20%), Gaps = 22/171 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSEN 59
           +      A +          S+  N+ N +   Y   +                   +++
Sbjct: 1   MNDTLLHAYSGIKTHQFGIDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADD 60

Query: 60  KNM-----------FDKVLHAHSSAIGQQRLLQSFEALK---EMMSADDHYN-----NSP 100
           +N             D       S          +  +    +     D         + 
Sbjct: 61  RNFGVAKGSNAISDKDGEYMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                      + Y  N     +    +   +  V     +  E + ++  
Sbjct: 121 FTRDGNFLRDADGYIVNTHGYYVYGIDLHKIKNGVLMAGNADAEAKILKGS 171


>gi|27363703|ref|NP_759231.1| flagellar basal body rod protein FlgG [Vibrio vulnificus CMCP6]
 gi|37679149|ref|NP_933758.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016]
 gi|320157107|ref|YP_004189486.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O]
 gi|27359819|gb|AAO08758.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus CMCP6]
 gi|37197891|dbj|BAC93729.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016]
 gi|319932419|gb|ADV87283.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 3/178 (1%)

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
                + +  + +    E      I     ++        +           +   L   
Sbjct: 81  HTHGNAQTTTNALDLMVEGDGFFQITMPDGNIGYSRNGQFTLNGEGVVVTSGSGYPLEPE 140

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             + +  +       G   +        N+      +        L    +N   +L   
Sbjct: 141 IVIPEDAISITVGTDGEVSVRIR-GQQNNQVVGQITITDFVNPGGLEPIGQNL--YLPTG 197

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            S      +        + +S   T  VN+ EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 198 ASGDPQEGVPGLDGLGEVRQSMLETSNVNVTEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 45/229 (19%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      ++   +      A+I  N+ NA    + +   +                    
Sbjct: 1   MHPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGGQSSQNT 60

Query: 57  S--------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  QLPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDLMVEGDGFFQITMPDGNIGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       ++  + +           +
Sbjct: 121 TLNGEGVVVTSGSGYPLEPEIVIPEDAISITVGTDGEVSVRIRGQQNNQVVGQITITDFV 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +    LD    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEVRQSMLETSNVNVTE 229


>gi|322378866|ref|ZP_08053283.1| flagellar hook protein FlgE [Helicobacter suis HS1]
 gi|321148676|gb|EFX43159.1| flagellar hook protein FlgE [Helicobacter suis HS1]
          Length = 601

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/387 (12%), Positives = 112/387 (28%), Gaps = 17/387 (4%)

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAE-EVVQNFNTSAREVQKIRADADKEIELEISNL 163
           ++  +   +   N   + L   +  N E  +V+         +      +K     + +L
Sbjct: 221 NRFLNQDANALANSDNEPLDLAMHRNLEIMIVKGDMAQDLTFKYGTGGPEKNEFHTLGDL 280

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
           +  L     ++  I      +  +   L  ++    + +  IG     +           
Sbjct: 281 KNLLKSKANLDLTIAKSKPDQVISPLMLQIKNPSDPEATLFIGGQMAEKLGWVASGMILK 340

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFI-------DGVVVSSNQGSAVPKGKIKALL 276
                ++V   I F    +       +   +       +     +   +        ++L
Sbjct: 341 KGETRDSVNIRIPFYSTTTEIYDKAGDKYLLKSDFFMTNSKDPMATPPTEQKWDVESSIL 400

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++RD      +     +     G    K PI  N +  P ++  +   D ++        
Sbjct: 401 EMRDKTPITPKPVRQTITFDQAGKMQSK-PITLNFKGNPLVYSINKSDDFESSDVPYEDS 459

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
            I    Q       LR+        +    +      +      +F  +     V     
Sbjct: 460 RIYQVSQDGKPKGILRNMRIDDDGIIHLSFSNGAIETMGRVGIAAFTNDQGLKKVG---- 515

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLH---MKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              L + +  +        S +  L       ++ F  I   Y  T  VN    L+ LI 
Sbjct: 516 -SNLFDISNATRNGRAVPLSGNPILGWDRDDGKLKFGKIMHKYLETSNVNAGRSLTNLIL 574

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +++ Y+++ K     D +++  +   K
Sbjct: 575 MQRGYSMNAKAFTTGDDLIKEAINLKK 601



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 35/171 (20%), Gaps = 22/171 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---VTVVTQRSEN 59
           +      A +          S+  N+ N +   Y   +                   +++
Sbjct: 1   MNDTLLHAYSGIKTHQFGIDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADD 60

Query: 60  KNM-----------FDKVLHAHSSAIGQQRLLQSFEALK---EMMSADDHYN-----NSP 100
           +N             D       S          +  +    +     D         + 
Sbjct: 61  RNFGVAKGSNAISDKDGEYMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENF 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                      + Y  N     +    +   +  V     +  E + ++  
Sbjct: 121 FTRDGNFLRDADGYIVNTHGYYVYGIDLHKIKNGVLMAGNADAEAKILKGS 171


>gi|300024606|ref|YP_003757217.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526427|gb|ADJ24896.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 8/219 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                   +    L   D  +    NQ+    R +             + N   L +   
Sbjct: 41  TDLLYQTDRAAGTLARDDDTMIPEGNQIGLGVRTVAIRHLSMQGALAPTSNKLDLALDGR 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS------KKFLWNVKNLAGYPDLIN 376
                      I  T        +N   +   G+V            +V+  A       
Sbjct: 101 GYFQVQGENNEILYTRAGAFNKDANGQLVTLEGNVVIPNITIPSTATDVQINASGQVYAI 160

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                  +      +A       L     N   + E   S +  +       F  I + Y
Sbjct: 161 IGATGQQQLLGQLSIANFANETGLDALGGNL--FRENQASGAAVIGNPGDSGFAKIHQGY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +  V+  +E++ LI  +++Y +++K+I   D M  T+
Sbjct: 219 LESSNVDPVKEITELIAAQRAYEMNSKVISAADDMFSTI 257



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 41/184 (22%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A    +        I  N+ N +   + R     T                     
Sbjct: 3   ALSIAATGMSAQQTNVEVIANNVANINTTGFKRARAEFTDLLYQTDRAAGTLARDDDTMI 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V  R  +       L   S+ +      + +  ++         N   
Sbjct: 63  PEGNQIGLGVRTVAIRHLS---MQGALAPTSNKLDLALDGRGYFQVQ------GENNEIL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                            L  +++   +   +       N S +    I A   +++  ++
Sbjct: 114 YTRAGAFNKDANGQLVTLEGNVVIPNITIPSTATDVQINASGQVYAIIGATGQQQLLGQL 173

Query: 161 SNLR 164
           S   
Sbjct: 174 SIAN 177


>gi|13472576|ref|NP_104143.1| flagellar basal body rod protein FlgG [Mesorhizobium loti
           MAFF303099]
 gi|14023322|dbj|BAB49929.1| flagellar basal body distal rod protein; FlgG [Mesorhizobium loti
           MAFF303099]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/181 (7%), Positives = 38/181 (20%), Gaps = 28/181 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51
               A    N        I  NI N +   Y R     +     V               
Sbjct: 3   ALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLV 62

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   +         L +  ++       + +  ++           +    
Sbjct: 63  PEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIE------GADGGTLYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 +       +    +   +    + V    N + +   +I    + +   ++  +
Sbjct: 117 AGAFNTNATGQLVTVDGANVIPAITVPTDAVEVIVNKTGQVFARIDGQTNLQTLGQLQIV 176

Query: 164 R 164
            
Sbjct: 177 N 177



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 49/174 (28%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + +  E      + +          I+  D       +     N   +       +    
Sbjct: 80  VHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYTRAGAFNTNATGQLVTVDGANVIPA 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  V+ +      +    D          +  +N              + E   S 
Sbjct: 140 ITVPTDAVEVIVNKTGQVFARIDGQTNLQTLGQLQIVNFANEAGLAPLGDNLFQETTASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +  +     F  I + Y     V+  +E++ LI  +++Y +++K+I   D M
Sbjct: 200 PANAGVPGDPGFATIQQGYLEASNVDPVKEITELISAQRAYEMNSKVIQAADDM 253


>gi|330447905|ref|ZP_08311553.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492096|dbj|GAA06050.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 261

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 45/180 (25%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     S+      +   +   F      D      +     +       +      
Sbjct: 77  TQKVFTQGNSQNTQQQLDLAVMGSGFFQIENSDGQVMYSRNGQFHVNSEGLMVNGQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   ++              D   +      +A       L     N   + E
Sbjct: 137 QPQIQIPEEANSISIGVDGIVTATLAGDPEPQELGQITLAKFINPAGLEAVGGNL--YKE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S      +        + +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TQASGQAQEIIAGTDGAGSLKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/147 (6%), Positives = 29/147 (19%), Gaps = 27/147 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                      +    +   F  ++              
Sbjct: 61  QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIEN------SDGQVMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI 128
               +   + E    N     L   + 
Sbjct: 115 SRNGQFHVNSEGLMVNGQGLPLQPQIQ 141


>gi|283834453|ref|ZP_06354194.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC
           29220]
 gi|291070000|gb|EFE08109.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC
           29220]
          Length = 261

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 48/176 (27%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +    +                 ++  +  +       + VN       +        
Sbjct: 80  TFTEGNVETTDNTMNVAIMGQGFWQVQKANGDIAYTRDGNLQVNADGVLTNAQGLPLQPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 + +        ++      +       +  +N        A     +LE   S 
Sbjct: 140 IDVPAGSTQVAFAPDGTVSAILPGDSDPTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +  +     + +       V++  E+  +I V+++Y ++ K++   D MLQ
Sbjct: 200 QPTEGIPGEDGLGTLQDGALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQ 255



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/183 (9%), Positives = 46/183 (25%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    + +    + Q F  ++          +   
Sbjct: 61  IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNTMNVAIMGQGFWQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +    N     L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTNAQGLPLQPEIDVPAGSTQVAFAPDGTVSAILPGDSDPTELGQLT 174

Query: 162 NLR 164
            + 
Sbjct: 175 LVN 177


>gi|84388093|ref|ZP_00990989.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01]
 gi|84377160|gb|EAP94030.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++   ++    +++    +V     ++    + +       F    + D
Sbjct: 50  NQPGGQSSQNTELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            +    +    T+  +    ++         +          +    ++        N  
Sbjct: 110 GETGYSRNGQFTLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNV 169

Query: 386 FI-FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            +    +        L    +N   +L    S      +       +I +S   T  VN+
Sbjct: 170 VVGQITITDFVNPGGLEPVGQNL--YLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  +I+ ++ Y +++K+I   DKM+
Sbjct: 228 TEELVNMIEAQRVYEMNSKVISSVDKMM 255



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 48/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    + +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKL 107
                        +                         +     +     +      + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEE----VVQNFNTSAREVQKIRADADKEIELEISNL 163
             + +       +    +  I   E+     V N    +  ++  + +           +
Sbjct: 121 TLNGDGAIVTSGQGYALQPEIVIPEDAISVTVGNDGEVSVRLRGEQNNVVVGQITITDFV 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNVTE 229


>gi|238916190|ref|YP_002929707.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC
           27750]
 gi|238871550|gb|ACR71260.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC
           27750]
          Length = 277

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/273 (8%), Positives = 74/273 (27%), Gaps = 4/273 (1%)

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
              +       + D           I +++  +   +     +       + +      +
Sbjct: 7   TAASGMMSQQTSVDTIANNLANVNTIGYKQEQTQFKSLLYQNLQAKTTSANGDDKPVGAQ 66

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
             + + +    S+         +         +    +   +                  
Sbjct: 67  VGLGSRVSAVTSIYTQGALNATDSLTDFAIDGNGFFAVRDTNTGDTVYTRNGHFTWATAT 126

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIF 388
               +S +             +    +  + +  N+  +    +L+     ++     I 
Sbjct: 127 EGVMLSTSEGYPVLSADGAEIVLGQDANGEDYKTNLITIDTDGNLLYPDESNNPAPIGIK 186

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF-NHISESYSNTVGVNLQEE 447
             +   +    L +   + +G  E   S         +V   + + +SY     V +  E
Sbjct: 187 IGLYQFSNPAGLDKLGSSYLG--ETEASGVPLNEDYDEVGKKSSLRQSYLEASNVQVATE 244

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  LI  +++Y + +K I  +D M++      +
Sbjct: 245 MVNLITAQRAYELCSKAITTSDTMMEQANNLKR 277



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 20/112 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A +   +      +I  N+ N +   Y +  T                     
Sbjct: 1   MMRSLWTAASGMMSQQTSVDTIANNLANVNTIGYKQEQTQFKSLLYQNLQAKTTSANGDD 60

Query: 47  -PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD 94
            P    V       +         L+A  S          F A+++  + D 
Sbjct: 61  KPVGAQVGLGSRVSAVTSIYTQGALNATDSLTDFAIDGNGFFAVRDTNTGDT 112


>gi|253702432|ref|YP_003023621.1| flagellar basal body rod protein FlgG [Geobacter sp. M21]
 gi|251777282|gb|ACT19863.1| flagellar basal-body rod protein FlgG [Geobacter sp. M21]
          Length = 262

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 64/252 (25%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               + +N + +      + +                        A              
Sbjct: 11  GMQAQQLNIDVVAHNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNATTIPTGIQVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   A   + +           +          ++  D       +  +  + Q R   
Sbjct: 71  GVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGALKRDGQGRVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S  +             +   G    ++              +   + +      A    
Sbjct: 131 SDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQLASFSNPAGLNAIGKN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +L  + S +       Q     I + +     V++ EE+  +I  +++Y I++K I  +
Sbjct: 191 LFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMIVGQRAYEINSKAIQAS 250

Query: 469 DKMLQTLLEGVK 480
           D+MLQ      +
Sbjct: 251 DEMLQQAAGLKR 262



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 57/240 (23%), Gaps = 29/240 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A +           +  N+ NA    + +                       T
Sbjct: 1   MIRALWTAASGMQAQQLNIDVVAHNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNAT 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V          K      + A  + +        F  +++         ++  
Sbjct: 61  TIPTGIQVGLGVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQ------SDGSTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                L+   +          +   V+   NA  V    + +    Q  +  A     L+
Sbjct: 115 TRAGALKRDGQGRVVTSDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           +++         +  +      +S         Q  +   +   +   +  +      ++
Sbjct: 175 LASFSNPAGLNAIGKNLFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMI 234


>gi|119384847|ref|YP_915903.1| flagellar basal body rod protein FlgG [Paracoccus denitrificans
           PD1222]
 gi|119374614|gb|ABL70207.1| flagellar basal-body rod protein FlgG [Paracoccus denitrificans
           PD1222]
          Length = 261

 Score = 67.7 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 62/221 (28%), Gaps = 8/221 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                 +      L   +  +     QL    R    +          +     + I   
Sbjct: 41  ADLQYQQATRPGTLTATNGAMVPAGVQLGLGVRPASVTVMLAQGTPVQTNGDLDIAIEGN 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                       + T   + +  +    +   G      +   ++        +    ++
Sbjct: 101 GYLEVTLPSGISAYTRDGSLKRSAEGQVVTSEGYPLVPDITIPEDARSIAINADGQVFAY 160

Query: 383 NK------NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                   N     +A       L     N   +LE   S +  +    Q     I   +
Sbjct: 161 FDDRVEPENLGQITLANFVNGKGLEAVGSNM--FLETPASGAPQVAAPGQEGLGTIRAGF 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                V+   E++ LIK ++ Y +++K+I   D+ML T ++
Sbjct: 219 LEESSVDPVREIAELIKAQRGYELNSKVITAADQMLGTTVQ 259



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 33/181 (18%), Gaps = 28/181 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A +  +    +   I  N+ N     Y  R                          
Sbjct: 3   ALQIAASGMSAQQMRVDVISNNLANMSTTGYNARRAEFADLQYQQATRPGTLTATNGAMV 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +            +        +  +        +  +            S    
Sbjct: 63  PAGVQLGLGVRPASVTVMLAQGTPVQTNGDLDIAIEGNGYLEV------TLPSGISAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              L+ S E          L   +    +      N   +         + E   +I+  
Sbjct: 117 DGSLKRSAEGQVVTSEGYPLVPDITIPEDARSIAINADGQVFAYFDDRVEPENLGQITLA 176

Query: 164 R 164
            
Sbjct: 177 N 177


>gi|262364764|gb|ACY61321.1| flagellar hook protein [Yersinia pestis D182038]
          Length = 288

 Score = 67.4 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 67/271 (24%), Gaps = 30/271 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
            F+ A    N  ++Q  +I  NI N+  K +    T  +       P  V V        
Sbjct: 2   SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              D         +        F  ++E         +         R  ++ Y  N   
Sbjct: 62  K--DGQKEKTGMGLDLAISGGGFFVVRE------SSGDKAYTRAGMFRSDVDGYLVNGQG 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L     D A  +     +                +L+I+N          ++      
Sbjct: 114 MKLQGYPADAAGNIQAGIIS----------------DLKINNAGVPAKASEQLDFMANLN 157

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            +    +    +  +      +    +   +   + +  Y    TT          +   
Sbjct: 158 ASVTAPSVSVFNPTNEKSYNFTTTSTVYDSLGREHAVAHYFVKSTTPPAGSVAS-EWAVH 216

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
           ++    + + P+ +      +        G 
Sbjct: 217 HTVDGGTATPPLTLQFTDTGALIPGIPAAGS 247


>gi|88799023|ref|ZP_01114604.1| Flagellar basal body rod protein [Reinekea sp. MED297]
 gi|88778250|gb|EAR09444.1| Flagellar basal body rod protein [Reinekea sp. MED297]
          Length = 261

 Score = 67.4 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 50/180 (27%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +  +           +       F    + D +    +  +  +       +   +  
Sbjct: 77  TQKQFVQGDLNMTEQPLDMAINGRGFFQVLMPDGNIAYTRDGTFHLDAEGNVVTANGYFL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +      +    +              D+         +        L     N   +LE
Sbjct: 137 EPNIQVPEQTKTITVGTDGIVTAVSAGDNDPVEIGNIDIVDFVNPAGLQAIGNNL--FLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +    + S   F  I +       V + EE+  +I  +++Y +++K +   D+ML
Sbjct: 195 TAASGAPAEGVPSLDGFGSIIQGALENSNVTIVEEMVDMISTQRAYEMNSKAVSTADQML 254



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 49/242 (20%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +       +          ++I  N+ NA    Y +   +       V            
Sbjct: 1   MHKALWVGKTGLEAQDIALSTISNNLANAATTGYKKERAVFEDLIYQVQRQPGAQSSQNT 60

Query: 52  --------VVTQRSENK--NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R+           L+     +      + F  +           N   
Sbjct: 61  QLPSGLQLGTGVRTVGTQKQFVQGDLNMTEQPLDMAINGRGFFQVL------MPDGNIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                     E      +   L     V +  + +    +     V     D  +   ++
Sbjct: 115 TRDGTFHLDAEGNVVTANGYFLEPNIQVPEQTKTITVGTDGIVTAVSAGDNDPVEIGNID 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           I +         + N+      AS   A                +   +  +      ++
Sbjct: 175 IVDFVNPAGLQAIGNNLFLETAASGAPAEGVPSLDGFGSIIQGALENSNVTIVEEMVDMI 234

Query: 220 YT 221
            T
Sbjct: 235 ST 236


>gi|315185552|gb|EFU19321.1| flagellar basal-body rod protein FlgG [Spirochaeta thermophila DSM
           6578]
          Length = 264

 Score = 67.4 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 3/137 (2%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEY 403
            SN   L     + + F+ +  +++    +        +        +        LL  
Sbjct: 130 TSNGYRLIPEIVLPEGFIADTLSVSEDGRVTVKVPGQDDPVEVGQIQIYRFVNPSGLLAV 189

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N   +   N S               +   +     V++  E+  +I  +++Y +++K
Sbjct: 190 GDNL--YKVTNASGDPIGGRPGFDGMGKLLHKFLEMSNVSVVNEMVEMIVAQRAYELNSK 247

Query: 464 LIMFTDKMLQTLLEGVK 480
            +  +D ML T +   +
Sbjct: 248 AVQTSDSMLGTAVNLKR 264



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/156 (5%), Positives = 29/156 (18%), Gaps = 27/156 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A +          ++  N+ N +   + +                        
Sbjct: 1   MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60

Query: 47  -----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +    V   + +K      L    +        + F  +        +      
Sbjct: 61  VVPTPTQVGHGVRVAASSKIFTQGALQHTDNVSDLAIQGEGFFRVL------LYDGTYAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                 +          +   L   ++     +   
Sbjct: 115 TRDGSFKIDSNGQLVTSNGYRLIPEIVLPEGFIADT 150


>gi|257457574|ref|ZP_05622741.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC
           35580]
 gi|257444960|gb|EEV20036.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC
           35580]
          Length = 264

 Score = 67.4 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
               V L     N   + +   S            F      +     V+   E+  +I 
Sbjct: 180 FQNPVGLSAQGSNL--FRQTPASGQAIAGRPGFNGFGKTEHKFLEMSNVSTVSEMVNMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++Y  ++K I  +D ML T +   +
Sbjct: 238 AQRAYEFNSKAIQTSDNMLGTAVGLKR 264



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 8/134 (5%), Positives = 28/134 (20%), Gaps = 15/134 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54
           ++     A    N+      ++  N+ N +   + ++              +    T  T
Sbjct: 1   MVRSLWTAATGMNSQQANIDTVANNLANVNTSGFKKQRAEFEDLLYQTIRAAGTPATEDT 60

Query: 55  QRSENKN------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107
                        +     +    ++ Q  +        E       +            
Sbjct: 61  ITPVGVEMGHGAKLAATQRNFEQGSLQQTGVSTDVAIAGEGFFRVLQYDGTYAYTRDGSF 120

Query: 108 RDSLESYSKNLSED 121
           +   +      +  
Sbjct: 121 KIDADRQLVTSNGL 134


>gi|225181584|ref|ZP_03735025.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167692|gb|EEG76502.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1]
          Length = 259

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 30/163 (18%), Gaps = 28/163 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47
           M++      A        Q+      NI N +   Y ++ T+ +                
Sbjct: 1   MTI-RGLWNAAGGMRAQQQKIDVTAHNIANVNTTGYKKKTTLFSDLVYQSIERRGNAVEP 59

Query: 48  --------ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                            +   ++           +    +   +  +             
Sbjct: 60  AAAGEHPKTVGVGSKVAAIRSDLRPGTYLQTDRDLDMAIVGDGYFQI------TLPGGGM 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
                       E    N     +    +   +  V      A
Sbjct: 114 AYTRDGSFSRDSEGNIVNSQGYRVVFPQLPEGQYEVNVAPEGA 156



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           N+A    +   Y D          +A  +    L +   N +       S +  L    +
Sbjct: 150 NVAPEGAVSAVYEDGTVVPLGMLQLAYFDNPHGLEQLGDNLL--QATPASGAALLAFPGE 207

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +S+ Y  +  V+L  E++ LI  ++S+ ++++ +   ++M
Sbjct: 208 GSR--VSQGYLESSNVDLAAEMTQLIINQRSFELNSRALRTAEEM 250


>gi|134095095|ref|YP_001100170.1| basal-body rod protein [Herminiimonas arsenicoxydans]
          Length = 242

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           + D      +  S       Q  ++  F         +   ++         +     + 
Sbjct: 89  MPDGTTAYTRDGSFQTDNQGQMVTSSGFPIQPAITIPENATSITISRDGIVSVTVSGTTA 148

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                   +A       L+    N   ++E   S + + +         + ++Y  T  V
Sbjct: 149 ATEIGALQLATFINPAGLMSRGENL--YVETTASGTANTNTPGSNGAGLLKQNYVETSNV 206

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           N+ EEL  +I+ +++Y I++K I  +D+MLQ L + 
Sbjct: 207 NVVEELVSMIQTQRAYEINSKAITTSDQMLQRLTQI 242



 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 49/244 (20%), Gaps = 34/244 (13%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI------------------------SPENVTVVTQR 56
              I  N+ N     + R   +                               V  V   
Sbjct: 1   MDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQLGTGVRPVATE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +       L   S+A         F  +            +        +   +    
Sbjct: 61  RIH---TQGNLQLTSNAKNLAIEGDGFFQVL------MPDGTTAYTRDGSFQTDNQGQMV 111

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S     +  I   E       +    V    +      E+    L  F++   +++  
Sbjct: 112 TSSGFP-IQPAITIPENATSITISRDGIVSVTVSGTTAATEIGALQLATFINPAGLMSRG 170

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
                 +        +        + +   + T   N  + +V        +E   + I 
Sbjct: 171 ENLYVETTASGTANTNTPGSNGAGLLKQNYVETSNVNVVEELVSMIQTQRAYEINSKAIT 230

Query: 237 FEKM 240
               
Sbjct: 231 TSDQ 234


>gi|94495409|ref|ZP_01301989.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58]
 gi|94424797|gb|EAT09818.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58]
          Length = 262

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 2/185 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L   +++       +   A +       +      D      +  + ++       +  
Sbjct: 74  ALQGTSKINSQGTLTQTSNALDMAIEGSGYFQVQQPDGSIAYSRAGNFSVTAEGTIVTGD 133

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                      +   +V              +S         +A       L     N +
Sbjct: 134 GLPLIPQITVPQGATSVSIGNDGTVSATLQGESEPSQLGQIELASFMNPSGLQSIGGNLL 193

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             +E   S +  + +        I   Y  T  VN+ EEL  +I+ +++Y +++K+I  T
Sbjct: 194 --VETAASGTPQVGVAGLEGRGVIRSGYLETSNVNIVEELVDMIETQRAYEVNSKMIKAT 251

Query: 469 DKMLQ 473
           D+MLQ
Sbjct: 252 DEMLQ 256



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 41/185 (22%), Gaps = 34/185 (18%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS  A  + A+   +  + +   I  N+ N +   + +                      
Sbjct: 1   MS-NAALHVARTGLDAQNTKMRVIANNLANVNTTGFKKDRADFETLAYQQIVQAGANSDA 59

Query: 46  ---------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                        V +      N       L   S+A+        +  +++        
Sbjct: 60  ENKFATGLNLGSGVALQGTSKINSQ---GTLTQTSNALDMAIEGSGYFQVQQ------PD 110

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
            +           + E          L   +         +          ++ +++   
Sbjct: 111 GSIAYSRAGNFSVTAEGTIVTGDGLPLIPQITVPQGATSVSIGNDGTVSATLQGESEPSQ 170

Query: 157 ELEIS 161
             +I 
Sbjct: 171 LGQIE 175


>gi|126734107|ref|ZP_01749854.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2]
 gi|126716973|gb|EBA13837.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2]
          Length = 261

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +AG      L     N   +LE   S    +    +     + + Y     V+   E++
Sbjct: 174 SLAGFTNAKGLEAIGSNL--FLETPASGPSVVGTPGEDGLGVLRQGYLEDSSVDPVREVT 231

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            LI+ ++ Y +++K+I   D+ML  +++ 
Sbjct: 232 DLIEAQRGYELNSKVITAADQMLSAMVQL 260



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 27/140 (19%), Gaps = 28/140 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A         +   I  N+ N +   Y  R                          
Sbjct: 3   ALKIAAAGMTAQQMRVEVISNNLANMNTTGYNPRRAEFADLHYQQLVRPGTINASDGTVL 62

Query: 47  PENVTVV-TQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  + +    R  + +  +    L A    +        +  +            S    
Sbjct: 63  PTGIQLGLGVRPSAISVMLSQGALGATGGDLDLAIEGDGYLEV------TLPSGASAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDIL 123
              L+ + +          +
Sbjct: 117 DGALKLTGDGLIVTSDGYPV 136


>gi|289208116|ref|YP_003460182.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix]
 gi|288943747|gb|ADC71446.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix]
          Length = 262

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 53/182 (29%), Gaps = 2/182 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              ++      ++   + +       F    + + D    +  S  +  + +   +  + 
Sbjct: 76  STEKMFTQGNLQQTDNSLDVAIEGRGFFQVLMPNGDIGYTRDGSFQLNADGEVVMSNGYP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G        ++               +         +A       L     N   + 
Sbjct: 136 LQPGLFVPPDTQSLAIGKDGTVTAQIPGQAEPVELGNIQLADFVNPAGLQAIGENL--FQ 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S               + +    T  VN+ EEL  +I+ +++Y +++K I   D+ 
Sbjct: 194 ETAASGVAQQAQPGLNGTGTLVQGSLETSNVNIAEELVNMIETQRAYEVNSKAISAADQS 253

Query: 472 LQ 473
           LQ
Sbjct: 254 LQ 255



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/143 (5%), Positives = 32/143 (22%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + +++  N+ N +   + +   +                    
Sbjct: 1   MNQALWIAKTGLDAQHTRMSTVSNNLANVNTTGFKKDRAVFEDLIYQTVRQPGAQATQDQ 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    +++      + F  +           +   
Sbjct: 61  QLPSGLQIGTGVRAVSTEKMFTQGNLQQTDNSLDVAIEGRGFFQVL------MPNGDIGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 + + +      +   L 
Sbjct: 115 TRDGSFQLNADGEVVMSNGYPLQ 137


>gi|92114096|ref|YP_574024.1| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM
           3043]
 gi|91797186|gb|ABE59325.1| Flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM
           3043]
          Length = 260

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 2/169 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F A  + D  +   +  S  I  N Q  +   +  D   V  +   +V    
Sbjct: 94  DLAINGQGFFAVQMPDGTSAYTRDGSFQIDENGQMVTAGGYPLDPPIVIPENALSVSISQ 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +    D+  +      ++       L     N   + E + S   +  +      
Sbjct: 154 DGVVSVTQPGDTAAQEVGQLTLSKFINPAGLQSMGENL--YQETDASGPRNDLIPGMEGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             + + Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML  L + 
Sbjct: 212 GRLYQGYVETSNVNVVEEMVSMIETQRAYEINSKAVETSDQMLSRLTQL 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 33/171 (19%), Gaps = 21/171 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A+    +   +   I  N+ N     + R   +                    
Sbjct: 1   MIRSLWTAKTGLESQQVKLDVISNNLSNVSTNGFKRSRPVFEDLLYQNVRQPGAQASAVD 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + V T       +  + LH                  +   +       S     
Sbjct: 61  TLPSGLQVGTGVR---PVATERLHTQGGLQNTDNSKDLAINGQGFFAVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
              +              L   ++     +  + +           D   +
Sbjct: 118 GSFQIDENGQMVTAGGYPLDPPIVIPENALSVSISQDGVVSVTQPGDTAAQ 168


>gi|115523179|ref|YP_780090.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           BisA53]
 gi|115517126|gb|ABJ05110.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris
           BisA53]
          Length = 262

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        I  NI N +  +Y R     T                     
Sbjct: 3   SLAIAATGMSAQQLNVEVIANNIANINTTSYKRSRAEFTDLFYQIDRMQGVPNRVGEGAV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L    +A       + +  +           ++ 
Sbjct: 63  PEGAKLGLGVRSAAVRKLH---LQGALAQTGNAYDLAVNGRGWFQVV------GPNGDTL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + ++         +  T++          N S +   K+  +    +  ++
Sbjct: 114 YTRAGAFNTNADAQLVTADGYKVDPTILIPEGTAQVTVNESGQVYAKLDTEVTPRLLGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TLAN 177



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 2/173 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   A +       +      + D    +  +     + Q  +   +  D   +  +  
Sbjct: 87  AQTGNAYDLAVNGRGWFQVVGPNGDTLYTRAGAFNTNADAQLVTADGYKVDPTILIPEGT 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             V              +   +      +A       L     N   + E   S +  + 
Sbjct: 147 AQVTVNESGQVYAKLDTEVTPRLLGQLTLANFANEAGLDPLGSNL--YKETIASGTPVVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
               + F  I + Y  +  V+  +E++ LI  ++SY +++K+I   D+M  T+
Sbjct: 205 FPGDIGFGKIHQHYLESSNVDPVKEITELISAQRSYEMNSKVIQAADEMASTI 257


>gi|330953722|gb|EGH53982.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7]
          Length = 162

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 2/160 (1%)

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                          I   +    Q  S    L+   +       +  N+    +L   Y
Sbjct: 4   TTATWAANGATGAASIKLDMSSTTQTASVSGLLKQDQNGYATGQLSGMNVDSSGNLFATY 63

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            +  ++      +        L +       W E   S              +I+     
Sbjct: 64  TNGKSQVIGQTSLTSFANVQGLAQ--AGGTNWRETFASGVPVSGAPQSGTLGYITGQALE 121

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 122 ESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 161


>gi|197120123|ref|YP_002140550.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem]
 gi|197089483|gb|ACH40754.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem]
          Length = 262

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 64/252 (25%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               + +N + + +    + +                        A              
Sbjct: 11  GMQAQQLNIDVVANNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNATTIPTGIQVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   A   + +           +          ++  D       +     + Q R   
Sbjct: 71  GVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGAFKRDGQGRVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S  +             +   G    ++              +   + +      A    
Sbjct: 131 SDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQLASFSNPAGLNAIGKN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +L  + S +       Q     I + +     V++ EE+  +I  +++Y I++K I  +
Sbjct: 191 LFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMIVGQRAYEINSKAIQAS 250

Query: 469 DKMLQTLLEGVK 480
           D+MLQ      +
Sbjct: 251 DEMLQQAAGLKR 262



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 56/240 (23%), Gaps = 29/240 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A +           +  N+ NA    + +                       T
Sbjct: 1   MIRALWTAASGMQAQQLNIDVVANNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNAT 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V          K      + A  + +        F  +++         ++  
Sbjct: 61  TIPTGIQVGLGVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQ------SDGSTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +   +          +   V+   NA  V    + +    Q  +  A     L+
Sbjct: 115 TRAGAFKRDGQGRVVTSDGQPVIPEVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           +++         +  +      +S         Q  +   +   +   +  +      ++
Sbjct: 175 LASFSNPAGLNAIGKNLFLPTDSSGAATTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMI 234


>gi|254508453|ref|ZP_05120573.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16]
 gi|219548663|gb|EED25668.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16]
          Length = 262

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 3/253 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+     ++  
Sbjct: 5   LWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    +++    +V     ++    + +       F    + D +    +    T+  
Sbjct: 65  GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQFTVND 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399
                ++ S       +          +    ++        N   +             
Sbjct: 125 EGAIVTSGSGYNLQPEIVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQITTVDFINPGG 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   +L    S      +     F  I +S   T  VN+ EEL  +I+ ++ Y 
Sbjct: 185 LEPVGQNL--YLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIEAQRVYE 242

Query: 460 ISNKLIMFTDKML 472
           +++K+I   DKM+
Sbjct: 243 MNSKVISAVDKMM 255



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    Y +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       V+  + +        +  +
Sbjct: 121 TVNDEGAIVTSGSGYNLQPEIVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQITTVDFI 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTE 229


>gi|126738578|ref|ZP_01754283.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6]
 gi|126720377|gb|EBA17083.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6]
          Length = 261

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +AG      L     N   ++    S + +     +     + + Y     V
Sbjct: 167 GQLLGQFNLAGFTNPKGLEALGSNL--FIATEASGAANTSTAGEDGLGSLRQGYLEGSSV 224

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 225 DSVREVTELIEAQRGYEMNAKVISAVDQMM 254



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 33/151 (21%), Gaps = 28/151 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQVSRAGTINASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V         + ++    L   +S +      + +  +            S    
Sbjct: 63  PTGVQVGLGVRPAAISVHLNQGALKQTNSDLDVAIEGKGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              L+ S E          +   +    + +
Sbjct: 117 DGALKRSAEGLIVTSDGYPVSPEITIPNDAL 147


>gi|300817268|ref|ZP_07097486.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1]
 gi|300530244|gb|EFK51306.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1]
          Length = 261

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 48/178 (26%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +    +                 ++  +  +       + VN       S        
Sbjct: 80  TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTISQGLPLQPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G    +       +       +  +N        A     +LE   S 
Sbjct: 140 IDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
                +  +     + ++      V++  E+  +I V+++Y ++ K++   D MLQ +
Sbjct: 200 QPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYI 257



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 61/242 (25%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWFSKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +          L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTISQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174

Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            ++      AS         +  +   + + + G +  + N    ++
Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234

Query: 220 YT 221
             
Sbjct: 235 TV 236


>gi|260866415|ref|YP_003232817.1| putative lateral flagellar component of cell-distal portion of
           basal-body rod [Escherichia coli O111:H- str. 11128]
 gi|257762771|dbj|BAI34266.1| predicted lateral flagellar component of cell-distal portion of
           basal-body rod [Escherichia coli O111:H- str. 11128]
 gi|323178492|gb|EFZ64070.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180]
          Length = 261

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 48/178 (26%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +    +                 ++  +  +       + VN       S        
Sbjct: 80  TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTNSQGLPLQPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G    +       +       +  +N        A     +LE   S 
Sbjct: 140 IDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
                +  +     + ++      V++  E+  +I V+++Y ++ K++   D MLQ +
Sbjct: 200 QPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYI 257



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTLEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +    N     L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174

Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            ++      AS         +  +   + + + G +  + N    ++
Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234

Query: 220 YT 221
             
Sbjct: 235 TV 236


>gi|299131804|ref|ZP_07024999.1| fagellar hook-basal body protein [Afipia sp. 1NLS2]
 gi|298591941|gb|EFI52141.1| fagellar hook-basal body protein [Afipia sp. 1NLS2]
          Length = 604

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 103/410 (25%), Gaps = 20/410 (4%)

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
           + +              ++ SA      + T  I+    +  + + N +  I        
Sbjct: 215 NGSKNGSVQNSKLTTATQITSATLLSGATNTDSIATDFTAGNTITVNGTTTITFTASGGL 274

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
            +      + +  ++      A+       S     ++  T + + +   +++       
Sbjct: 275 DDATHIPVDGTIADLLAKIDAANGNTTNPSSVSGGVITLNTGLANNLTVTSSNAAAFAAL 334

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
                      + +    T         V  SD     +           +         
Sbjct: 335 GFST-------ATVTASRTGGGTAGTGTVIGSDSQNFIDESVSGGATTAYDVSGAPVSLQ 387

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
             +      S   G +                   +QN          G  +   P    
Sbjct: 388 LRWAKTDSASLGAGHSDVWNLFYQTNPNATGTDVAWQNVGVNFTFGANGQMNPAVPSVTL 447

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
           +          G   L +      +  +        N    +              +++ 
Sbjct: 448 TNA------TIGGIALGDVTMNFGATGLTQFADANGNVQVNQIQNDGFPAGQLQTVSISN 501

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
              ++ +Y +  N +     +A  N    L                 + +          
Sbjct: 502 NGRVVGNYSNGRNIDLAAITLATFNGPNFLKRV-------DGGAFEVTDESGQALFGKGG 554

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            I  S       ++ +E + LI  +Q+Y+ + K+I  +++M+Q LL  ++
Sbjct: 555 TIVGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVLR 604



 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/454 (9%), Positives = 104/454 (22%), Gaps = 22/454 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53
           M +      +     + S    +I  NI N+    + R DT           + +    V
Sbjct: 1   MGIFGALTTSVAGLRSQSYALENISGNIANSQTTAFKRIDTSFLDLIPDTGANAQLAGSV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLRD 109
           +  S   N     + A S A         F A+++  S  D+                  
Sbjct: 61  SSSSRETNTVQGDVQAASVATYMAINGDGFFAVQKPGSFTDNNPVFDGVDRYTRRGDFTL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID     V    +    ++        +    ++      S 
Sbjct: 121 DKNGYLVNGAGYYLEGIPIDPTTGNVTG--SVPTVLKFGNDFLPAQPTTTVTYRANLASY 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                  +  K  +     + L+  D     +         +  + +  V  S  TT  +
Sbjct: 179 P------LTTKHDTSVPGSELLNVGDFTANPLIVGTPAQPYINGSKNGSVQNSKLTTATQ 232

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                +     N+ ++ ++        V  ++        G   A     D  +     +
Sbjct: 233 ITSATLLSGATNTDSIATDFTAGNTITVNGTTTITFTASGGLDDATHIPVDGTIADLLAK 292

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC---VNPQYRS 346
           +D          S    +   +  +                    + T+           
Sbjct: 293 IDAANGNTTNPSSVSGGVITLNTGLANNLTVTSSNAAAFAALGFSTATVTASRTGGGTAG 352

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
             + +            +      Y                     G   +     + + 
Sbjct: 353 TGTVIGSDSQNFIDESVSGGATTAYDVSGAPVSLQLRWAKTDSASLGAGHSDVWNLFYQT 412

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
           +      + +  +     +      ++ +  +  
Sbjct: 413 NPNATGTDVAWQNVGVNFTFGANGQMNPAVPSVT 446


>gi|323165588|gb|EFZ51375.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G]
          Length = 125

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
           +     +         +     +  L     N     E   S   +           + +
Sbjct: 24  VTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYT--ETQSSGVPNESTPGLNGAGLLYQ 81

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            Y  T  VN+ EEL  +I+V+++Y I++K +  TD+MLQ L + 
Sbjct: 82  GYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 125


>gi|197335127|ref|YP_002156698.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11]
 gi|197316617|gb|ACH66064.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11]
          Length = 262

 Score = 67.4 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 3/185 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +++    +V     ++      +       F    + D +    +    T+       + 
Sbjct: 72  SKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQFTLNDEGAIVTT 131

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN-FIFDPVAGINTNVTLLEYARN 406
            +  R    +          +    ++        +                 L    +N
Sbjct: 132 GAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFINPGGLEPVGQN 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +L    S            F  + +S      VN+ EEL  +I+ ++ Y +++K+I 
Sbjct: 192 L--YLPTGASGDPQEGTPGLEGFGAVRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVIS 249

Query: 467 FTDKM 471
             DKM
Sbjct: 250 AVDKM 254



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/203 (6%), Positives = 43/203 (21%), Gaps = 19/203 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61
           +      ++   +      A+I  N+ NA    + +   +      +NV     +S    
Sbjct: 1   MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60

Query: 62  -------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +        +                +        + +       + 
Sbjct: 61  ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       ++  + +        +  +
Sbjct: 121 TLNDEGAIVTTGAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFI 180

Query: 164 RRFLSELTVVNDAIKFKTASKHD 186
                E    N  +    +    
Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQ 203


>gi|283784086|ref|YP_003363951.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
 gi|282947540|emb|CBG87093.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
          Length = 261

 Score = 67.4 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 46/176 (26%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +    +                 ++  +  +       + +N       S        
Sbjct: 80  TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQINADGVLTNSQGLPLQPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G    +       +       +  +N        A     +LE   S 
Sbjct: 140 IDVPAGATSVAFGEDGTVTAILPGDSDPTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +  +     +  +      V++  E+  +I V+++Y ++ K++   D MLQ
Sbjct: 200 QPTEGIPGEDGLGTLQGNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQ 255



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 47/183 (25%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +    N     L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQINADGVLTNSQGLPLQPEIDVPAGATSVAFGEDGTVTAILPGDSDPTELGQLT 174

Query: 162 NLR 164
            + 
Sbjct: 175 LVN 177


>gi|52841453|ref|YP_095252.1| flagellar basal body rod protein FlgG [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628564|gb|AAU27305.1| flagellar basal body rod protein FlgG [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 261

 Score = 67.4 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 2/189 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L    ++      +    A +       F    + D      +  S       Q  ++ 
Sbjct: 73  HLVATEKIFSQGSLQNTQNALDVAIEGRGFFTVLMPDGTQSYTRDGSFKTDSTGQIVNSN 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
            +              +              ++         +        L    +N  
Sbjct: 133 GYPLQPNITIPPQTTKITIGTDGTVSALVAGNNAPSVIGNIQLTDFINPAGLQPIGQNLY 192

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
              E   S +             + +       VN+ EEL  +I+ ++SY I+ K I   
Sbjct: 193 T--ETVASGTPITDNPGNSGLGTLLQGSLEASNVNVVEELVNMIQAQRSYEITAKSIQTV 250

Query: 469 DKMLQTLLE 477
           D MLQ L +
Sbjct: 251 DSMLQYLTQ 259



 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 33/152 (21%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               +++      +  A+I  N+ N +   + +   +                       
Sbjct: 4   ALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNSQIP 63

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                   V +V             L    +A+      + F  +               
Sbjct: 64  TGINMGTGVHLVATEKI---FSQGSLQNTQNALDVAIEGRGFFTVL------MPDGTQSY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 +        N +   L   +    + 
Sbjct: 115 TRDGSFKTDSTGQIVNSNGYPLQPNITIPPQT 146


>gi|59712479|ref|YP_205255.1| flagellar basal body rod protein FlgG [Vibrio fischeri ES114]
 gi|59480580|gb|AAW86367.1| flagellar distal rod protein FlgG [Vibrio fischeri ES114]
          Length = 262

 Score = 67.4 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 3/185 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           +++    +V     ++      +       F    + D +    +    T+       + 
Sbjct: 72  SKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQFTLNDEGAIVTT 131

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN-FIFDPVAGINTNVTLLEYARN 406
            +  R    +          +    ++        +                 L    +N
Sbjct: 132 GAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFINPGGLEPVGQN 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +L    S            F  + +S      VN+ EEL  +I+ ++ Y +++K+I 
Sbjct: 192 L--YLPTGASGDPQEGTPGLDGFGAVRQSMLEASNVNVTEELVNMIEAQRVYEMNSKVIS 249

Query: 467 FTDKM 471
             DKM
Sbjct: 250 AVDKM 254



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/229 (7%), Positives = 51/229 (22%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61
           +      ++   +      A+I  N+ NA    + +   +      +NV     +S    
Sbjct: 1   MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60

Query: 62  -------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +        +                +        + +       + 
Sbjct: 61  ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       ++  + +        +  +
Sbjct: 121 TLNDEGAIVTTGAGYRLEPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINTVDFI 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDF-LDQRDVLLQKISEIIGISTIV 211
                E    N  +    +         LD    + Q + E   ++   
Sbjct: 181 NPGGLEPVGQNLYLPTGASGDPQEGTPGLDGFGAVRQSMLEASNVNVTE 229


>gi|331666548|ref|ZP_08367422.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271]
 gi|331065772|gb|EGI37656.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271]
          Length = 261

 Score = 67.4 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 48/178 (26%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +    +                 ++  +  +       + VN       S        
Sbjct: 80  TFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTISQGLPLQPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                       G    +       +       +  +N        A     +LE   S 
Sbjct: 140 IDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSAEGDNLYLETAASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
                +  +     + ++      V++  E+  +I V+++Y ++ K++   D MLQ +
Sbjct: 200 QPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQYI 257



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 61/242 (25%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +          L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTISQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174

Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            ++      AS         +  +   + + + G +  + N    ++
Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234

Query: 220 YT 221
             
Sbjct: 235 TV 236


>gi|157147100|ref|YP_001454419.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC
           BAA-895]
 gi|157084305|gb|ABV13983.1| hypothetical protein CKO_02877 [Citrobacter koseri ATCC BAA-895]
          Length = 261

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 58/212 (27%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G++         +      ++    +       +      +       F      D D
Sbjct: 52  PGGQLDQNNIAPTGIQYGTGVKIVGTQKEFTVGSIQNTGQTFDVAITGQGFFQVETADGD 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +  +     +    +             + + +++             ++      
Sbjct: 112 IAYTRAGNFQKTPDGVLTNAQGLPLVPQIELPENVKDLQIGKDGTITATVAGETDPVELG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   + E   S      +  +     + +       V + EE
Sbjct: 172 QLTLVNFVNPAGLEAIGGNL--YRETAASGEAVEGVPGEDALGQLEQGSLEGSNVQVVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  +I V+++Y ++ K++   D ML+ + + +
Sbjct: 230 MVDMITVQRAYEMNAKMVSAADDMLKFVTQSM 261



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 36/186 (19%), Gaps = 33/186 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      ++        +  +I  N+ N +   + R   M                    
Sbjct: 1   MNPALWISKTGLAAQDAKMTAISNNLANVNTTGFKRDRAMFADLFYQNQRTPGGQLDQNN 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +V  +          +             Q F  ++          +
Sbjct: 61  IAPTGIQYGTGVKIVGTQK---EFTVGSIQNTGQTFDVAITGQGFFQVE------TADGD 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                    + + +    N     L   +                    +  + D     
Sbjct: 112 IAYTRAGNFQKTPDGVLTNAQGLPLVPQIELPENVKDLQIGKDGTITATVAGETDPVELG 171

Query: 159 EISNLR 164
           +++ + 
Sbjct: 172 QLTLVN 177


>gi|320537132|ref|ZP_08037104.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421]
 gi|320146005|gb|EFW37649.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421]
          Length = 264

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              N  L     N   + +   S            F      +     V+   E+  +I 
Sbjct: 180 FQNNAGLAAEGSNL--FKQTPASGQAIPGRPGFNGFGKTEHKFLEMSNVSTVSEMVNMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++Y  ++K I  +D ML T +   +
Sbjct: 238 AQRAYEFNSKAIQTSDNMLGTAVGLKR 264



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 10/145 (6%), Positives = 29/145 (20%), Gaps = 15/145 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           ++     A +  N+      ++  N+ N +   + ++                       
Sbjct: 1   MIRSLWTAASGMNSQQANIDTVANNLANVNTSGFKKQRAEFEDLLYQTVKSAGTPATEDT 60

Query: 52  ---VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107
              V  Q      +          A+    L        E       +            
Sbjct: 61  ITPVGIQMGHGSKLAATQRIFEQGALQHTGLTSDVAVAGEGFFRVLQYDGTYAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAE 132
           +   +      +   +   +I    
Sbjct: 121 KIDADRQLVTSNGLRVLPEIIFPEN 145


>gi|197120190|ref|YP_002140617.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem]
 gi|197089550|gb|ACH40821.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem]
          Length = 294

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 4/138 (2%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 ++L   G     +  +                        DP A      +L +
Sbjct: 161 DNTGLITYLATDGITQNYYSTSGVAGVATTPAAAAAAQKVAVVTAPDPTALKKVGGSLYQ 220

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                      + +       K+  V   I  +      V+L  E   +I  +++Y+ ++
Sbjct: 221 A----TTTSGVSAAGFSLAANKANGVSEQILSNTLEQSTVDLANEFVKMITTQRAYSANS 276

Query: 463 KLIMFTDKMLQTLLEGVK 480
           K I  +D+M Q +L  ++
Sbjct: 277 KTITTSDQMTQEVLSLIR 294



 Score = 63.5 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 41/172 (23%), Gaps = 10/172 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTV 52
           MS+ +      +      +    I  NI N +   Y    T+ +                
Sbjct: 1   MSVTSALYTGVSGLLQNGEAMNVIGNNISNVNTVGYKGARTLFSDMLSQNVGNNSQIGKG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL--KEMMSADDHYNNSPTHYISKLRDS 110
           V  ++              +         SF AL      +     +++           
Sbjct: 61  VQMQAVQNVFSQGSTQTSENVTDLAIQGNSFFALKPSTAAAPVAAQSSAFLSRAGAFHTD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              Y  N     +  T  +  + +      +    + +  D    I    ++
Sbjct: 121 SNLYLVNPDGYQVLDTAGNPIKFLNSGAAPATDFGKVLSIDNTGLITYLATD 172


>gi|91224197|ref|ZP_01259460.1| putative flagellar basal-body rod protein [Vibrio alginolyticus
           12G01]
 gi|269965646|ref|ZP_06179759.1| Putative flagellar basal-body rod protein flgG [Vibrio
           alginolyticus 40B]
 gi|91191108|gb|EAS77374.1| putative flagellar basal-body rod protein [Vibrio alginolyticus
           12G01]
 gi|269829714|gb|EEZ83950.1| Putative flagellar basal-body rod protein flgG [Vibrio
           alginolyticus 40B]
          Length = 261

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 45/180 (25%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +             ++     
Sbjct: 77  TQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHRNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +          +               D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNAVSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAMGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   D  +        I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TEASGPADELIAGADGAGIIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADDML 254



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 32/156 (20%), Gaps = 33/156 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +              +  +    + Q F  ++           
Sbjct: 61  ELPSGIQLGSGVRVVGTQKV---FTQGNTQNTTQELDLAVMGQGFFQIEN------SDGQ 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                  +   + E    N     L   +      V
Sbjct: 112 IMYTRNGQFHRNSEGLMVNSQGLPLEPQIQIPDNAV 147


>gi|207092742|ref|ZP_03240529.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1]
          Length = 646

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/454 (9%), Positives = 110/454 (24%), Gaps = 41/454 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +         ++   V + ++   +  +T A +V       +  I+  + 
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDNTGPLENIRIDPGMV 175

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                      ++           D    +   D   +  S+  GI+ +  +  ++    
Sbjct: 176 MP---ARASNRISMRANLNAGRHADQTAAIFALDSSAKTPSD--GINPVYDSGTNLAQVA 230

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
            D  +L+      +   +     V+ +S  +  D +  + N    +   KI        S
Sbjct: 231 EDMGSLYNEDGDALLLNENQGIWVSYKSAKMVKDILPSAENSTLELNGVKISFTNDSAVS 290

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                    + +  V   +  E               +    K  +  + Q  +      
Sbjct: 291 RTSSLVAAKNAINAVKSQTGIEAYLDGKQLRLENTNELDGDEKLKNIVVTQAGTGAFANF 350

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
                + +  +   + S     +          I  +  + +   +    A I  + +L 
Sbjct: 351 LDGDKDVTAFKYSYTHSISPNAD----------IGQFRTTEDLRALIQHDANIVKDPSLA 400

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
           +  ++S   +  + +      + ++   N I E+
Sbjct: 401 DNYQDSAASIGVSVNQYGMFEINNKDNKNAIKEN 434


>gi|54294165|ref|YP_126580.1| flagellar basal body rod protein FlgG [Legionella pneumophila str.
           Lens]
 gi|54297184|ref|YP_123553.1| flagellar basal body rod protein FlgG [Legionella pneumophila str.
           Paris]
 gi|148358808|ref|YP_001250015.1| flagellar basal body rod protein FlgG [Legionella pneumophila str.
           Corby]
 gi|296106853|ref|YP_003618553.1| flagellar basal-body rod protein FlgG [Legionella pneumophila
           2300/99 Alcoy]
 gi|53750969|emb|CAH12380.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str.
           Paris]
 gi|53753997|emb|CAH15468.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str.
           Lens]
 gi|148280581|gb|ABQ54669.1| flagellar basal body rod protein FlgG [Legionella pneumophila str.
           Corby]
 gi|295648754|gb|ADG24601.1| flagellar basal-body rod protein FlgG [Legionella pneumophila
           2300/99 Alcoy]
 gi|307609979|emb|CBW99508.1| flagellar biosynthesis protein FlgG [Legionella pneumophila 130b]
          Length = 261

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 2/189 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L    ++      +    A +       F    + D      +  S       Q  ++ 
Sbjct: 73  HLVATEKIFSQGSLQNTQNALDVAIEGRGFFTVLMPDGTQAYTRDGSFKTDSTGQIVNSN 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
            +              +              ++         +        L    +N  
Sbjct: 133 GYPLQPNITIPPQTTKITIGTDGTVSALVAGNNAPSVIGNIQLTDFINPAGLQPIGQNLY 192

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
              E   S +             + +       VN+ EEL  +I+ ++SY I+ K I   
Sbjct: 193 T--ETVASGTPITDNPGNSGLGTLLQGSLEASNVNVVEELVNMIQAQRSYEITAKSIQTV 250

Query: 469 DKMLQTLLE 477
           D MLQ L +
Sbjct: 251 DSMLQYLTQ 259



 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 33/152 (21%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               +++      +  A+I  N+ N +   + +   +                       
Sbjct: 4   ALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNSQIP 63

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                   V +V             L    +A+      + F  +               
Sbjct: 64  TGINMGTGVHLVATEKI---FSQGSLQNTQNALDVAIEGRGFFTVL------MPDGTQAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 +        N +   L   +    + 
Sbjct: 115 TRDGSFKTDSTGQIVNSNGYPLQPNITIPPQT 146


>gi|170741836|ref|YP_001770491.1| flagellar basal body rod protein FlgG [Methylobacterium sp. 4-46]
 gi|168196110|gb|ACA18057.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46]
          Length = 262

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 57/178 (32%), Gaps = 2/178 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +     +       +      + +    +  S       Q  +   ++ +   +     
Sbjct: 87  AQTSNNLDLAINGRGYFQVTNPNGEVNYTRAGSFNKSSTGQLVTLEGYVVEPAILFPANT 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +V               +  +      +A       L         + E   S +    
Sbjct: 147 VDVVINQSGQVYAKVDGQATPQLLGQLSIANFANESGLEPLGNGL--YRETAASGAPVTG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +     F  + + Y  +  V+  +E++ LI  ++++ +++K+I   D+M  T+ +G++
Sbjct: 205 VAGDTGFGKVQQGYLESSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 40/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  N+ N +   +       T                     
Sbjct: 3   ALAIAATGMNAQQLNLEVIANNVANLNTTGFKGARAEFTDLLYQAERQQGVPNQTGQEAV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ ++      L   S+ +      + +  +              
Sbjct: 63  PEGALLGLGVRAAAIRNLHRQ---GPLAQTSNNLDLAINGRGYFQVTN------PNGEVN 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S       L   ++   ++  A  V    N S +   K+   A  ++  ++
Sbjct: 114 YTRAGSFNKSSTGQLVTLEGYVVEPAILFPANTVDVVINQSGQVYAKVDGQATPQLLGQL 173

Query: 161 SNLR 164
           S   
Sbjct: 174 SIAN 177


>gi|213616339|ref|ZP_03372165.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 187

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 37/182 (20%), Gaps = 9/182 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D         +        F  L +         +       + +        N+    
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVNMQGMQ 115

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L           +Q     A         A K        +    ++            A
Sbjct: 116 LTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDA 175

Query: 183 SK 184
             
Sbjct: 176 DS 177


>gi|296282277|ref|ZP_06860275.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum
           JL354]
          Length = 262

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 10/215 (4%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN--VPGL 317
            +        G+      +        Q+    M    + + +    +A + +      +
Sbjct: 49  DARVAGQKSSGETAYATGLNLGTGVAVQSTSQIMTAGTLDTTNNAFDLALDGDGFFQIAM 108

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                         +     +     +   P      G+ +     +    A        
Sbjct: 109 PGGRTGYTRAGNFTRSAEGMLVTQQGFAVQPEITVPEGASAIAIAPDGTVSATIN----- 163

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             +S         +A       L     N +   E   S + +L +  +     I +   
Sbjct: 164 -GESEPTELGQIQIARFTNPSGLQAIGDNFLA--ETAASGAAELGIAGEGGRGQIRQGML 220

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
               VN+ EEL  +I+ +++Y IS+K++   D+ML
Sbjct: 221 EGSNVNIVEELVAMIEAQRAYEISSKMVSAVDEML 255



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 27/142 (19%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------------- 49
            +    A+        +   I  N+ N     + R                         
Sbjct: 3   TSALQVARTGLEAQDARMRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQKSSGETA 62

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                   T V  +S ++ M    L   ++A         F  +            +   
Sbjct: 63  YATGLNLGTGVAVQSTSQIMTAGTLDTTNNAFDLALDGDGFFQIA------MPGGRTGYT 116

Query: 103 YISKLRDSLESYSKNLSEDILG 124
                  S E          + 
Sbjct: 117 RAGNFTRSAEGMLVTQQGFAVQ 138


>gi|170680582|ref|YP_001742375.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5]
 gi|256020230|ref|ZP_05434095.1| flagellar basal body rod protein FlgG [Shigella sp. D9]
 gi|260853468|ref|YP_003227359.1| putative lateral flagellar component of cell-distal portion of
           basal-body rod [Escherichia coli O26:H11 str. 11368]
 gi|293403357|ref|ZP_06647448.1| flgG [Escherichia coli FVEC1412]
 gi|293408369|ref|ZP_06652208.1| flagellar basal-body rod protein FlgG [Escherichia coli B354]
 gi|298378968|ref|ZP_06988849.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302]
 gi|300900357|ref|ZP_07118533.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1]
 gi|300936128|ref|ZP_07151067.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1]
 gi|306813301|ref|ZP_07447494.1| flagellar basal body rod protein FlgG [Escherichia coli NC101]
 gi|307313517|ref|ZP_07593138.1| flagellar basal-body rod protein FlgG [Escherichia coli W]
 gi|331645420|ref|ZP_08346524.1| flagellar basal-body rod protein FlgG [Escherichia coli M605]
 gi|332281392|ref|ZP_08393805.1| lateral flagellar rod protein [Shigella sp. D9]
 gi|59889782|emb|CAH19138.1| Lateral flagellar rod protein (FlgG-like) [Escherichia coli]
 gi|170518300|gb|ACB16478.1| lateral flagellar rod protein LfgG [Escherichia coli SMS-3-5]
 gi|257752117|dbj|BAI23619.1| predicted lateral flagellar component of cell-distal portion of
           basal-body rod [Escherichia coli O26:H11 str. 11368]
 gi|284920046|emb|CBG33103.1| lateral flagellar rod protein (FlgG-like) [Escherichia coli 042]
 gi|291429210|gb|EFF02230.1| flgG [Escherichia coli FVEC1412]
 gi|291471547|gb|EFF14030.1| flagellar basal-body rod protein FlgG [Escherichia coli B354]
 gi|298280081|gb|EFI21585.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302]
 gi|300356125|gb|EFJ71995.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1]
 gi|300458706|gb|EFK22199.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1]
 gi|305854064|gb|EFM54503.1| flagellar basal body rod protein FlgG [Escherichia coli NC101]
 gi|306906685|gb|EFN37196.1| flagellar basal-body rod protein FlgG [Escherichia coli W]
 gi|315059544|gb|ADT73871.1| flagellar component of cell-distal portion of basal-body rod
           [Escherichia coli W]
 gi|323158101|gb|EFZ44200.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14]
 gi|323171066|gb|EFZ56715.1| flagellar basal-body rod protein FlgG [Escherichia coli LT-68]
 gi|323191540|gb|EFZ76801.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1]
 gi|323379897|gb|ADX52165.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11]
 gi|323975928|gb|EGB71022.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509]
 gi|327254556|gb|EGE66172.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v]
 gi|331045582|gb|EGI17708.1| flagellar basal-body rod protein FlgG [Escherichia coli M605]
 gi|332103744|gb|EGJ07090.1| lateral flagellar rod protein [Shigella sp. D9]
          Length = 261

 Score = 67.0 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 52/191 (27%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            F + +  +      +    +                 ++  +  +       + VN   
Sbjct: 67  QFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADG 126

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               S                    G    +       +       +  +N        A
Sbjct: 127 VLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTLVNFANPAGLSA 186

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
                +LE   S      +  +     + ++      V++  E+  +I V+++Y ++ K+
Sbjct: 187 EGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKM 246

Query: 465 IMFTDKMLQTL 475
           +   D MLQ +
Sbjct: 247 VSAADDMLQYI 257



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +    N     L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLT 174

Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            ++      AS         +  +   + + + G +  + N    ++
Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234

Query: 220 YT 221
             
Sbjct: 235 TV 236


>gi|330830301|ref|YP_004393253.1| flagellar basal body rod protein FlgG [Aeromonas veronii B565]
 gi|328805437|gb|AEB50636.1| Flagellar basal body rod protein FlgG [Aeromonas veronii B565]
          Length = 262

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 74/262 (28%), Gaps = 3/262 (1%)

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           M        T  +    +I+    N    ++               Q    P G+  A  
Sbjct: 1   MNPALWISKTGLDAQQTNISVTSNNLANASTVGFKKSRAIFEDLLYQNINQPGGRSSADT 60

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++   ++     ++    +       +    + +       +    + D      +    
Sbjct: 61  ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395
           T+       +  +       +          +     +      D  ++      ++   
Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINISDFV 180

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N   ++E   S +             I +    T  VN+ EEL  LI+ +
Sbjct: 181 NASGLQPMGENM--FVETQSSGAAAQGTAGADGLGVIKQGMLETSNVNVTEELVNLIQAQ 238

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           + Y +++K++   D M+  L++
Sbjct: 239 RVYEMNSKVLSAVDGMMSFLIQ 260



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 34/161 (21%), Gaps = 15/161 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      +    N+ NA    + +   +           P   +    
Sbjct: 1   MNPALWISKTGLDAQQTNISVTSNNLANASTVGFKKSRAIFEDLLYQNINQPGGRSSADT 60

Query: 56  R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  +  H+  +       L    + +          ++      + 
Sbjct: 61  ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
             + E            +  I   E           +V   
Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQ 161


>gi|254698165|ref|ZP_05159993.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 246

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + I     +     +       +        +    +  +     
Sbjct: 49  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 108

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  +      +           V                   +     +A       L
Sbjct: 109 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 168

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S    + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 169 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 226

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 227 NSKVIQAADEM 237



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/171 (5%), Positives = 35/171 (20%), Gaps = 34/171 (19%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI-------------------------SPENVTVVTQ 55
              I  NI N +   + R     T                              V     
Sbjct: 2   LEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R           +   +        + +  ++           +          + +   
Sbjct: 62  R---NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETLYTRAGAFNKNADGQL 112

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             L  + +   +    + +      + +   K++   ++    +++     
Sbjct: 113 VTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFT 163


>gi|170021358|ref|YP_001726312.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739]
 gi|188494741|ref|ZP_03002011.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638]
 gi|307136860|ref|ZP_07496216.1| flagellar basal body rod protein FlgG [Escherichia coli H736]
 gi|331640715|ref|ZP_08341862.1| flagellar basal-body rod protein FlgG [Escherichia coli H736]
 gi|331671806|ref|ZP_08372602.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280]
 gi|169756286|gb|ACA78985.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739]
 gi|188489940|gb|EDU65043.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638]
 gi|315616825|gb|EFU97442.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431]
 gi|323181549|gb|EFZ66969.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357]
 gi|331040089|gb|EGI12297.1| flagellar basal-body rod protein FlgG [Escherichia coli H736]
 gi|331070795|gb|EGI42154.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280]
          Length = 261

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 52/191 (27%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
            F + +  +      +    +                 ++  +  +       + VN   
Sbjct: 67  QFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADG 126

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               S                    G    +       +       +  +N        A
Sbjct: 127 VLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLTLVNFANPAGLSA 186

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
                +LE   S      +  +     + ++      V++  E+  +I V+++Y ++ K+
Sbjct: 187 EGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKM 246

Query: 465 IMFTDKMLQTL 475
           +   D MLQ +
Sbjct: 247 VSAADDMLQYI 257



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +    N     L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLT 174

Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            ++      AS         +  +   + + + G +  + N    ++
Sbjct: 175 LVNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234

Query: 220 YT 221
             
Sbjct: 235 TV 236


>gi|325923276|ref|ZP_08184949.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC
           19865]
 gi|325546203|gb|EGD17384.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC
           19865]
          Length = 261

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G   A  Q+   +      ++    +       ++   A +       F    + D  
Sbjct: 52  PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +   +  +  I    +  +N  +    G    +   ++         +     +  +   
Sbjct: 112 SAYTRDGTFQINAQGEVVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   ++E   S                 +       VN  EE
Sbjct: 172 ALTLTDFINPSGLQSKGENL--FVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L  +I+ +++Y ++ K I  TD ML  L   V
Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + I  N+ N +   + R                        
Sbjct: 1   MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T                 S     R L      +           S     
Sbjct: 61  QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILG 124
              + + +      S   L 
Sbjct: 118 GTFQINAQGEVVTNSGYPLQ 137


>gi|312882657|ref|ZP_07742394.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369618|gb|EFP97133.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 262

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 76/253 (30%), Gaps = 3/253 (1%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
                T  +    +I+    N    ++               Q    P G+     ++  
Sbjct: 5   LWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPS 64

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++    +++    +V     ++    + +       F    + D +    +    T+  
Sbjct: 65  GLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVND 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI-FDPVAGINTNVT 399
                ++ +       ++         +    ++        N   +             
Sbjct: 125 EGIIVTSGAGYTLEPEIAIPEDAISITVGTDGEVSVRVRGQQNNQVVGQITTVDFINPGG 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N   +L    S      +     F  + +S   T  VN+ EEL  +I+ ++ Y 
Sbjct: 185 LEPIGQNL--YLPTGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIEAQRVYE 242

Query: 460 ISNKLIMFTDKML 472
           +++K+I   DKM+
Sbjct: 243 MNSKVISAVDKMM 255



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 47/229 (20%), Gaps = 20/229 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      ++I  N+ NA    + +   +           P   +    
Sbjct: 1   MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60

Query: 56  R-------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKL 107
                        +                         +        + +       + 
Sbjct: 61  ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR----EVQKIRADADKEIELEISNL 163
             + E            +  I   E+ +     +       V+  + +        +  +
Sbjct: 121 TVNDEGIIVTSGAGYTLEPEIAIPEDAISITVGTDGEVSVRVRGQQNNQVVGQITTVDFI 180

Query: 164 RRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                E    N  +    +    +     D    + Q + E   ++   
Sbjct: 181 NPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTE 229


>gi|27381984|ref|NP_773513.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum
           USDA 110]
 gi|27355154|dbj|BAC52138.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA
           110]
          Length = 262

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 2/178 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I     +     +       +      + + +  +  S     N Q  +   +L D    
Sbjct: 82  IQGALTQTGNPYDLAINGRGWFQVLGPNNEVQYTRAGSFNTNANSQLVTTDGYLLDPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +    V              +   +      +A       L     N   + E   S 
Sbjct: 142 IPQGTVEVTVNQTGQVFAKLDTEVNPRQIGQLNLANFANEAGLEPLGSNL--YRETTASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +  + +     +  I++ Y     V+  +E++ LI  +++Y ++ K+I  +D+M  T+
Sbjct: 200 TPVVGLPGDAGYGKINQKYLEASNVDPVKEITELISAQRAYEMNAKVIQASDEMASTV 257



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 37/184 (20%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N ++ +Y R     T                     
Sbjct: 3   SLAIAATGMNAQQTNIEVIANNIANINSTSYKRARAEFTDLFYQMDRMQGVANVNGSSPI 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L    +        + +  +          N   
Sbjct: 63  PEGANLGLGVKSAAIRKLH---IQGALTQTGNPYDLAINGRGWFQVL------GPNNEVQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +  S        +L   +      V    N + +   K+  + +     ++
Sbjct: 114 YTRAGSFNTNANSQLVTTDGYLLDPAITIPQGTVEVTVNQTGQVFAKLDTEVNPRQIGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 NLAN 177


>gi|258622490|ref|ZP_05717512.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus
           VM573]
 gi|258625232|ref|ZP_05720144.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus
           VM603]
 gi|258582479|gb|EEW07316.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus
           VM603]
 gi|258585190|gb|EEW09917.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus
           VM573]
          Length = 261

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 51/180 (28%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 77  TQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +        + ++              D   +      +A       L     N   + E
Sbjct: 137 EPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPAGLEAVGGNL--FRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + S   +  +  Q     I +       V + EE+  +I  +++Y ++ K++  TD ML
Sbjct: 195 TDASGLAEELVAGQDGTGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSATDDML 254



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/151 (7%), Positives = 31/151 (20%), Gaps = 27/151 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHSALWVSKTGMAAQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V + +                   +  +    + Q F  ++              
Sbjct: 61  ELPTGVQLGSGVRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIEN------SDGQIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
               +   + E    N     L   +     
Sbjct: 115 TRNGQFHVNSEGLMVNSQGLPLEPQIQIPDN 145


>gi|260466619|ref|ZP_05812807.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum
           WSM2075]
 gi|259029625|gb|EEW30913.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum
           WSM2075]
          Length = 262

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/181 (8%), Positives = 37/181 (20%), Gaps = 28/181 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51
               A    N        I  NI N +   Y R     +     V               
Sbjct: 3   ALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLV 62

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   +         L +  ++       + +  ++           +    
Sbjct: 63  PEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIE------GADGGTLYSR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 +       +    +   +    + V    N + +   +I    D +   ++   
Sbjct: 117 AGAFNTNATGQLVTVDGASVIPAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQIA 176

Query: 164 R 164
            
Sbjct: 177 N 177



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 2/180 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +  V           + +       +      D      +  +       Q  +     
Sbjct: 76  AVRNVHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYSRAGAFNTNATGQLVTVDGAS 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        V               +  +N     +A       L     N   + 
Sbjct: 136 VIPAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQIANFANEAGLAPLGDNL--FQ 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S   ++ +     F  I + Y     V+  +E++ LI  +++Y +++K+I   D M
Sbjct: 194 ETTASGPANVGVPGDPGFATIQQGYLEASNVDPVKEITELISAQRAYEMNSKVIQAADDM 253


>gi|330953727|gb|EGH53987.1| flagellar basal body rod protein FlgG [Pseudomonas syringae Cit 7]
          Length = 148

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 16  TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAIG 75

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 76  GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 133

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 134 ISTADQMLQNLTQ 146


>gi|154253003|ref|YP_001413827.1| flagellar basal body rod protein FlgG [Parvibaculum lavamentivorans
           DS-1]
 gi|154156953|gb|ABS64170.1| flagellar basal-body rod protein FlgG [Parvibaculum lavamentivorans
           DS-1]
          Length = 261

 Score = 67.0 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 2/188 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + R++            +       +    +   D+   +  +  I  + Q  +   + 
Sbjct: 76  AVNRIMTQGNMNNTENKLDVAIQGRGYFRIELPSGDDAYTRAGTFDIGPDGQLITADGYT 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G        ++   A     +     +  +      +        L     N     
Sbjct: 136 LAPGITIPPEATDIAISADGQVQVAIPGQTAPQIVGQMELVAFANEGGLDPLGGNLFA-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +  +          + + +  T  VN   E++ LI  +++Y ++ K+I  +D+M
Sbjct: 194 ETPASGAPTIGTPGNDGLGSVLQGFLETSNVNAVSEITSLITAQRAYEMNAKIITASDEM 253

Query: 472 LQTLLEGV 479
           +       
Sbjct: 254 MSVTSNMK 261



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 26/140 (18%), Gaps = 28/140 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
             + A             I  NI N     + R                           
Sbjct: 3   SLSIAATGMMAQQLNVEVISNNIANMSTTGFKRGRAEFQDLLYQNLRRVGANSSDAGTIV 62

Query: 47  PENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V       + N+ M    ++   + +      + +  ++          +     
Sbjct: 63  PSGVQVGLGVKTAAVNRIMTQGNMNNTENKLDVAIQGRGYFRIE------LPSGDDAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDIL 123
                   +          L
Sbjct: 117 AGTFDIGPDGQLITADGYTL 136


>gi|157959900|ref|YP_001499934.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC
           700345]
 gi|157844900|gb|ABV85399.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC
           700345]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 55/206 (26%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++    Q+   +      ++    +V             +       F      + 
Sbjct: 51  QPGGQVDEQNQLPAGLQLGTGTRVAGTQKVFTPGDMLTTNQQLDLAIEGQGFFQIEEANG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D    +        +    ++                 V   +           + ++  
Sbjct: 111 DVSFTRDGQFYRDSDGLMVTSQGLPLVPNIQIPDEALTVTIASDGIVSAQMAGQADSQEL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S +    +        + +       VN+ E
Sbjct: 171 GQITLVNFTNPAGLEARGSNL--YRETGASGAAIEGIAGDEALGQVRQGALEGANVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/185 (7%), Positives = 39/185 (21%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                             K      +   +  +      Q F  ++E             
Sbjct: 61  QLPAGLQLGTGTRVAGTQKVFTPGDMLTTNQQLDLAIEGQGFFQIEEANGDVS------F 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +     +          L   +    E +     +      ++   AD +   +I+
Sbjct: 115 TRDGQFYRDSDGLMVTSQGLPLVPNIQIPDEALTVTIASDGIVSAQMAGQADSQELGQIT 174

Query: 162 NLRRF 166
            +   
Sbjct: 175 LVNFT 179


>gi|332187904|ref|ZP_08389637.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17]
 gi|332012065|gb|EGI54137.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17]
          Length = 262

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 4/231 (1%)

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
               +     D     +     +      +  + + +        +       I +    
Sbjct: 28  ANVNTTGFKRDRAAFETLAYQTITAPGAASSTESKYATGLNLGTGVRIQGTARINTQGAM 87

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          ++     L    +     + +     S               
Sbjct: 88  QTTNNSLDMALDGEGFFQVQMPGGTLGYTRAGNFSRSAEGLLVTSEGYQVMPGITVPEGA 147

Query: 365 VKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +   G    ++                +A       L     N +   E   S + ++ 
Sbjct: 148 TQITIGTDGTVSATIQGQTAPAEIGQIQIATFPNPAGLQSKGDNYLT--ETAASGAVNMG 205

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +        I +       VN+ EEL  +I+ +++Y +++K+I  TD+MLQ
Sbjct: 206 VAGLEGRGQIRQGMLEGSNVNVVEELVDMIETQRAYEVNSKMIKSTDEMLQ 256



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/214 (8%), Positives = 45/214 (21%), Gaps = 37/214 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS  A  + A+   +    +   I  N+ N +   + R                      
Sbjct: 1   MS-SAAMHIARTGLDAQDMRMRVISNNLANVNTTGFKRDRAAFETLAYQTITAPGAASST 59

Query: 46  ---------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                        V +      N       +   ++++      + F  ++         
Sbjct: 60  ESKYATGLNLGTGVRIQGTARIN---TQGAMQTTNNSLDMALDGEGFFQVQ------MPG 110

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADAD 153
                        S E          +           +  +    T +  +Q   A A+
Sbjct: 111 GTLGYTRAGNFSRSAEGLLVTSEGYQVMPGITVPEGATQITIGTDGTVSATIQGQTAPAE 170

Query: 154 KEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
                  +       +    N   +   +   + 
Sbjct: 171 IGQIQIATFPNPAGLQSKGDNYLTETAASGAVNM 204


>gi|302037628|ref|YP_003797950.1| flagellar basal-body rod protein FlgG [Candidatus Nitrospira
           defluvii]
 gi|300605692|emb|CBK42025.1| Flagellar basal-body rod protein FlgG [Candidatus Nitrospira
           defluvii]
          Length = 263

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 53/183 (28%), Gaps = 1/183 (0%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                      + +          +   D  +    + +   +               V 
Sbjct: 81  WVQGNMRQTGNDLDLAIDGAGFFQVTRPDGTIMYTRNGSFKRDNVGNLVTGDGDQLNPVI 140

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD- 417
                 +K   G    ++       +      +  +  +      A     +L+   S  
Sbjct: 141 TIPSGALKIDVGQDGTVSVLLPGVTQASQVGQIQLVRFDNPSGLVAMGGNLFLDSFASGP 200

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +          F  + + +  +  VNL EE+  +I  ++SY I++K I  +D+M+Q    
Sbjct: 201 AQQGTGGFSTGFGTLQQGFLESSNVNLAEEMVNMIIAQRSYEINSKTIQASDEMMQIANN 260

Query: 478 GVK 480
             +
Sbjct: 261 LRR 263



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/153 (5%), Positives = 23/153 (15%), Gaps = 27/153 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A            +I  N+ N +   + R                        
Sbjct: 1   MIRAMWTAATGMTAQQLNVDTIANNLANVNTNAFKRSRAEFGDLLYQIQRLPGTNASNVG 60

Query: 57  S---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                             K      +    + +        F  +               
Sbjct: 61  VFPVGVQVGGGVRPITVAKEWVQGNMRQTGNDLDLAIDGAGFFQV------TRPDGTIMY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                 +            D L   +   +  +
Sbjct: 115 TRNGSFKRDNVGNLVTGDGDQLNPVITIPSGAL 147


>gi|114562344|ref|YP_749857.1| flagellar basal body rod protein FlgG [Shewanella frigidimarina
           NCIMB 400]
 gi|114333637|gb|ABI71019.1| flagellar basal-body rod protein FlgG [Shewanella frigidimarina
           NCIMB 400]
          Length = 262

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 3/161 (1%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           E      +               S           +   ++   ++         + +G 
Sbjct: 98  EGSGFFEVQMPDGTAAYTRNGQFSLDDTGQIVTPGSGYVVQPPITIPDDSTSITVSASGE 157

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +      + ++      +        L    +N         S +      S      
Sbjct: 158 VSVQTPGTAA-SQVIGQLTMTDFINPAGLDPLGQNLYTETG--ASGTPIQGTASLDGLGS 214

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           I +    T  VN+ EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 215 IRQGALETSNVNVTEELVNLIQGQRIYEMNSKVISAVDQML 255



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/165 (6%), Positives = 34/165 (20%), Gaps = 15/165 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--TVVTQRSENK 60
           +      ++   +      A I  N+ NA    + +   +                S+N 
Sbjct: 1   MHPALWISKTGVDAQQTNIAVISNNVANASTVGFKKSRAVFEDLLYQTVNQAGGISSDNS 60

Query: 61  NM-------------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +               + +    + +     L                  +      + 
Sbjct: 61  KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGSGFFEVQMPDGTAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                          + +  I   ++      +++ EV       
Sbjct: 121 SLDDTGQIVTPGSGYVVQPPITIPDDSTSITVSASGEVSVQTPGT 165


>gi|238752865|ref|ZP_04614330.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC
           43380]
 gi|238708904|gb|EEQ01157.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC
           43380]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 2/114 (1%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                N+              +S         +        L     N   + E   S +
Sbjct: 143 PAGSSNLAIGKDGTVTAQVGGESEPAELGQITLVDFVNPAGLEAVGGNM--YKETVASGT 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
               +  +  F  +         V + EE+  +I V+++Y ++ K++   D ML
Sbjct: 201 AVEGVPGEEAFGQLEHGSLEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 52/245 (21%), Gaps = 37/245 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNPALWVSKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGTPLDQNN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +   K      +      +      + F  ++           
Sbjct: 61  ATPNGIQLGSGVKVVGTQ---KQFTVGNIKVTKGELDVAIAGKGFFQIE------TSDGG 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKE 155
                   L  + +    N     L   +   A      +    T   +V      A+  
Sbjct: 112 LAYTRAGNLAINADGVLVNAQGMPLIPQIELPAGSSNLAIGKDGTVTAQVGGESEPAELG 171

Query: 156 IELEISNLRRFLSELTVVND-AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
               +  +     E    N       + +  +     +    L     E   +  +    
Sbjct: 172 QITLVDFVNPAGLEAVGGNMYKETVASGTAVEGVPGEEAFGQLEHGSLEGSNVQVVEEMV 231

Query: 215 NDMVV 219
           + + V
Sbjct: 232 DMITV 236


>gi|260762610|ref|ZP_05874944.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260673033|gb|EEX59854.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 243

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +     Q   +  + I     +     +       +        +    +  +     
Sbjct: 46  GALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNA 105

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           + Q  +      +           V                   +     +A       L
Sbjct: 106 DGQLVTLDGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGL 165

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S    + +     +  I + Y     V+  +E++ LI  +++Y +
Sbjct: 166 EPLGGNL--YRETEASGGPLVGVPGDPGYGSIKQGYLEASNVDPVKEITDLITAQRAYEM 223

Query: 461 SNKLIMFTDKM 471
           ++K+I   D+M
Sbjct: 224 NSKVIQAADEM 234



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/168 (5%), Positives = 35/168 (20%), Gaps = 34/168 (20%)

Query: 24  IVRNIENADNKNYVRRDTMTTI-------------------------SPENVTVVTQRSE 58
           I  NI N +   + R     T                              V     R  
Sbjct: 2   IANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAVR-- 59

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                    +   +        + +  ++           +          + +     L
Sbjct: 60  -NLHIQGSFNQTGNPYDVALTGRGWFQIQ------SPTGETLYTRAGAFNKNADGQLVTL 112

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
             + +   +    + +      + +   K++   ++    +++     
Sbjct: 113 DGNPVEPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFT 160


>gi|167626157|ref|YP_001676451.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis
           HAW-EB4]
 gi|167356179|gb|ABZ78792.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis
           HAW-EB4]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 54/206 (26%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G++    ++   +      ++    +V             +       F      + 
Sbjct: 51  QPGGQVDEQNELPSGLQLGTGTRVVGTQKVFTPGDMLTTNQQLDMAIEGQGFFQIEEANG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           +    +             ++            +    V   +           +  +  
Sbjct: 111 ELSYSRDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTVTIASDGIVSAQMAGQTDAQEL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L     N   + E   S +    +        I +       VN+ E
Sbjct: 171 GQITLVNFTNPAGLEARGNNL--YRETGASGAAVEGIAGDQALGQIRQGALEGANVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y ++ K++  +D ML
Sbjct: 229 EMVEMISTQRAYEMNAKVVSASDDML 254



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 54/242 (22%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R           V            
Sbjct: 1   MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R            +   +  +      Q F  ++E             
Sbjct: 61  ELPSGLQLGTGTRVVGTQKVFTPGDMLTTNQQLDMAIEGQGFFQIEEANGELS------Y 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +   + E          L   +    E +     +      ++    D +   +I+
Sbjct: 115 SRDGQFYRNSEGLMVTSQGLPLVPNIEIPEEALTVTIASDGIVSAQMAGQTDAQELGQIT 174

Query: 162 NLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            N+  +   AS          + +   +   + G +  V      ++
Sbjct: 175 LVNFTNPAGLEARGNNLYRETGASGAAVEGIAGDQALGQIRQGALEGANVNVVEEMVEMI 234

Query: 220 YT 221
            T
Sbjct: 235 ST 236


>gi|312136039|ref|YP_004003377.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor
           owensensis OL]
 gi|311776090|gb|ADQ05577.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           owensensis OL]
          Length = 267

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SAASGEPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SIANNLKR 267



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 48/200 (24%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E V+     S+  + ++     K+ E ++ +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDEMGRITYKDQEGQVQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193


>gi|299068734|emb|CBJ39973.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum
           CMR15]
          Length = 260

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S  I    Q  ++  +       
Sbjct: 82  TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAVT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +       +       +A       L     N     E   S 
Sbjct: 142 VPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +L          ++++Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML+ L +
Sbjct: 200 TANLAAPGANGVGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 58/242 (23%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++   +    Q   I  N+ N +   + R   +                   T
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    ++         F  ++              
Sbjct: 61  TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + +      S   +    TV  NA  +    + +         ++ +    +
Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAVTVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++N        ++  +      AS            V +   + +   +  V      ++
Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLAAPGANGVGVLNQNYVETSNVNVVEEMVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 QT 236


>gi|154174905|ref|YP_001408076.1| flagellar basal body rod protein FlgG [Campylobacter curvus 525.92]
 gi|112802860|gb|EAU00204.1| flagellar basal-body rod protein FlgG [Campylobacter curvus 525.92]
          Length = 262

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++    + ++     +       F    + D      +  +  +  N    ++  + 
Sbjct: 76  AINKIFSQGYFKETSNNLDMVIAGNGFFQLQLPDGTTAYTRNGAFKLDSNGTIVNSDGYQ 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                V       +         +    ++         +A       L     N   +L
Sbjct: 136 LIPQIVVPANATQISIGTDGTVSVLQAGETNMAQIGQIQIANFINPAGLHSMGDN--NYL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S    + +        I + +     V L EE++ LI  +++Y  ++K I  +D M
Sbjct: 194 ETAASGDAVVGVAGLDGLGTIRQGFVEMSNVQLVEEMTDLITGQRAYEANSKAITTSDSM 253

Query: 472 LQTLLEGVK 480
           L+ +    +
Sbjct: 254 LEIVNGLKR 262



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 36/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A         Q      NI N +   Y +                       T
Sbjct: 1   MMRSLYTAATGMIAQQTQIDVTSNNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V         NK          S+ +        F  L+           +  
Sbjct: 61  TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQLQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +        N     L   ++  A     +  T          + +     +I 
Sbjct: 115 TRNGAFKLDSNGTIVNSDGYQLIPQIVVPANATQISIGTDGTVSVLQAGETNMAQIGQIQ 174

Query: 162 NLR 164
              
Sbjct: 175 IAN 177


>gi|17548568|ref|NP_521908.1| flagellar basal-body rod protein FlgG [Ralstonia solanacearum
           GMI1000]
 gi|17430816|emb|CAD17498.1| probable flagellar basal-body rod protein flgg (distal rod protein)
           [Ralstonia solanacearum GMI1000]
          Length = 260

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S  I    Q  ++  +       
Sbjct: 82  TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +       +       +A       L     N     E   S 
Sbjct: 142 VPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +L          ++++Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML+ L +
Sbjct: 200 TANLAAPGSNGIGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 58/242 (23%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++   +    Q   I  N+ N +   + R   +                   T
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    ++         F  ++              
Sbjct: 61  TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + +      S   +    TV  NA  +    + +         ++ +    +
Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAITVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++N        ++  +      AS            + +   + +   +  V      ++
Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLAAPGSNGIGVLNQNYVETSNVNVVEEMVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 QT 236


>gi|301645415|ref|ZP_07245356.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1]
 gi|301076299|gb|EFK91105.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 2/183 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +       E    A N   +   F+     + D    +  +  +  +    ++     
Sbjct: 77  TQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNADGVLTNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      NV              DS         +        L   A N   +LE
Sbjct: 137 QPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLTLVNFANPAGLSAEADNL--YLE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S      +  +     + ++      V++  E+  +I V+++Y ++ K++   D ML
Sbjct: 195 TAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMITVQRAYEMNAKMVSAADDML 254

Query: 473 QTL 475
           Q +
Sbjct: 255 QYI 257



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    ++   +    + ++I  NI N +   + R   M                    
Sbjct: 1   MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  +   +            +  +    +A+    + Q F  ++          +   
Sbjct: 61  IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQ------KANGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+ + +    N     L   +   A      F         +  D+D     +++
Sbjct: 115 TRDGNLQVNADGVLTNSQGLPLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLT 174

Query: 162 NLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            +            ++      AS         +  +   + + + G +  + N    ++
Sbjct: 175 LVNFANPAGLSAEADNLYLETAASGQPTEGVPGEDGLGTLQDNALEGSNVDIVNEMVAMI 234

Query: 220 YT 221
             
Sbjct: 235 TV 236


>gi|146277706|ref|YP_001167865.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555947|gb|ABP70560.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17025]
          Length = 262

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 8/157 (5%)

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                 +    Q    TI     Y   P      G+VS     +       PD       
Sbjct: 112 RMGYTRNGTFSQNAEGTITTPSGYVVQPEIQIPEGAVSVTISADGIVSVLMPDETEA--- 168

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
              +      +A       L          +E   S    +    +  F  + +    + 
Sbjct: 169 ---QEVGQITIATFANPRGLQPVGETFA--VETAASGEAAIGNPVEPGFGKLVQGALESS 223

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            VN+ +EL  +I+ +++Y +++K I  +D+M+Q L  
Sbjct: 224 NVNVVQELVDMIETQRAYEVNSKSISASDEMMQYLAN 260



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 30/148 (20%), Gaps = 34/148 (22%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS     + A+   N    +   I  N+ N +   + R                      
Sbjct: 1   MS-TNAMHVAKTGLNAQQTRMQVISNNLANVNTTGFKRDRANFESLLYQTWKPGGAQTSE 59

Query: 44  -------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                  +     V VV+            L    +A+        F  +          
Sbjct: 60  ATAMTSPSAVGTGVRVVSTEKL---YTQGSLANTDNALDLAIDGPGFFQVL------LPD 110

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILG 124
                        + E      S  ++ 
Sbjct: 111 GRMGYTRNGTFSQNAEGTITTPSGYVVQ 138


>gi|51246533|ref|YP_066417.1| flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila
           LSv54]
 gi|50877570|emb|CAG37410.1| probable flagellar hook basal body protein (FlgG) [Desulfotalea
           psychrophila LSv54]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 2/256 (0%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
               GTT  +    +I+    N   V +               Q   VP  +     +  
Sbjct: 4   SLWTGTTGMQAQQLNIDIIANNLANVNTTGFKKSSADFQDLLYQTMKVPGSQTSPDTESP 63

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             ++     +   + +V       +     +       F      D + K  +  +    
Sbjct: 64  TGILVGLGVKPAAVTKVFTQGDLIQTENELDVAIQGRGFFQIEAPDGNIKYTRAGAFKRD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            N +  S+  +              V         +    DS         +AG      
Sbjct: 124 SNGRMTSSDGYPLIPEITIPSGAKQVSIGETGIVSVKLDSDSTETEIGTIELAGFTNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N         S +  + +  +  +  + + Y     VNL  E++ +I  +++Y 
Sbjct: 184 LAAIGKNLFEETG--ASGTATIGIPGEEGYGTLIQQYLEGSNVNLVAEMAAMISTQRAYE 241

Query: 460 ISNKLIMFTDKMLQTL 475
           I++ ++  +D+M+QT+
Sbjct: 242 INSSMVKTSDQMMQTV 257



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/164 (4%), Positives = 24/164 (14%), Gaps = 33/164 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +                    I  N+ N +   + +                        
Sbjct: 1   MFRSLWTGTTGMQAQQLNIDIIANNLANVNTTGFKKSSADFQDLLYQTMKVPGSQTSPDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V                L    + +      + F  ++          N
Sbjct: 61  ESPTGILVGLGVKPAAVTKV---FTQGDLIQTENELDVAIQGRGFFQIE------APDGN 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
                    +        +     L   +   +     +   + 
Sbjct: 112 IKYTRAGAFKRDSNGRMTSSDGYPLIPEITIPSGAKQVSIGETG 155


>gi|167905092|ref|ZP_02492297.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           NCTC 13177]
          Length = 258

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +    + +   +   FI   + + +    +    +I       +      
Sbjct: 73  TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 132

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   ++               S         +A       LL    N   ++E
Sbjct: 133 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 190

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +       VF  I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 191 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 250

Query: 473 QTLLEGVK 480
           Q L +  +
Sbjct: 251 QQLSQAAR 258



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/139 (7%), Positives = 32/139 (23%), Gaps = 27/139 (19%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ISPE 48
              ++        +  ++  N+ N +   + R   +                     SP 
Sbjct: 1   MWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPS 60

Query: 49  NVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
            + + +            D  +     ++    + + F  +            +      
Sbjct: 61  GIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGYTRAG 114

Query: 106 KLRDSLESYSKNLSEDILG 124
           +L  + E    N     L 
Sbjct: 115 QLSINAEGLLVNAQGLPLQ 133


>gi|22127325|ref|NP_670748.1| flagellar basal body rod protein FlgG [Yersinia pestis KIM 10]
 gi|45442798|ref|NP_994337.1| flagellar basal body rod protein FlgG [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597635|ref|YP_071826.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           IP 32953]
 gi|108809053|ref|YP_652969.1| flagellar basal body rod protein FlgG [Yersinia pestis Antiqua]
 gi|108810750|ref|YP_646517.1| flagellar basal body rod protein FlgG [Yersinia pestis Nepal516]
 gi|145597819|ref|YP_001161895.1| flagellar basal body rod protein FlgG [Yersinia pestis Pestoides F]
 gi|150260247|ref|ZP_01916975.1| lateral flagellar basal body rod protein [Yersinia pestis
           CA88-4125]
 gi|153947407|ref|YP_001399636.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421910|ref|YP_001604845.1| flagellar basal body rod protein FlgG [Yersinia pestis Angola]
 gi|165925150|ref|ZP_02220982.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939077|ref|ZP_02227629.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008679|ref|ZP_02229577.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212222|ref|ZP_02238257.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399088|ref|ZP_02304612.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419078|ref|ZP_02310831.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425222|ref|ZP_02316975.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466335|ref|ZP_02331039.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1]
 gi|186896769|ref|YP_001873881.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927914|ref|YP_002345789.1| flagellar basal body rod protein FlgG [Yersinia pestis CO92]
 gi|229837410|ref|ZP_04457573.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A]
 gi|229840625|ref|ZP_04460784.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842824|ref|ZP_04462976.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900947|ref|ZP_04516071.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516]
 gi|270487670|ref|ZP_06204744.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27]
 gi|294502791|ref|YP_003566853.1| putative flagellar basal-body rod protein [Yersinia pestis Z176003]
 gi|21960406|gb|AAM86999.1|AE013948_7 flagellar biosynthesis protein, cell-distal portion of basal-body
           rod [Yersinia pestis KIM 10]
 gi|45437664|gb|AAS63214.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590917|emb|CAH22573.1| putative flagellar basal-body rod protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774398|gb|ABG16917.1| flagellar basal-body rod protein [Yersinia pestis Nepal516]
 gi|108780966|gb|ABG15024.1| putative flagellar basal-body rod protein [Yersinia pestis Antiqua]
 gi|115346525|emb|CAL19402.1| putative flagellar basal-body rod protein [Yersinia pestis CO92]
 gi|145209515|gb|ABP38922.1| flagellar basal-body rod protein [Yersinia pestis Pestoides F]
 gi|149289655|gb|EDM39732.1| lateral flagellar basal body rod protein [Yersinia pestis
           CA88-4125]
 gi|152958902|gb|ABS46363.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354725|gb|ABX88673.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola]
 gi|165913033|gb|EDR31658.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923350|gb|EDR40501.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992018|gb|EDR44319.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206968|gb|EDR51448.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963072|gb|EDR59093.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051592|gb|EDR63000.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055985|gb|EDR65766.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699795|gb|ACC90424.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682286|gb|EEO78378.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516]
 gi|229690091|gb|EEO82148.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696991|gb|EEO87038.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705533|gb|EEO91543.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A]
 gi|262360823|gb|ACY57544.1| putative flagellar basal-body rod protein [Yersinia pestis D106004]
 gi|262364768|gb|ACY61325.1| putative flagellar basal-body rod protein [Yersinia pestis D182038]
 gi|270336174|gb|EFA46951.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27]
 gi|294353250|gb|ADE63591.1| putative flagellar basal-body rod protein [Yersinia pestis Z176003]
 gi|320016709|gb|ADW00281.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +        L     N   + E   S      +  +  F  + +       V +
Sbjct: 169 EVGQITLVNFINPAGLEAIGGNL--YRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQV 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EE+  +I V+++Y ++ K++   D ML
Sbjct: 227 VEEMVDMITVQRAYEMNAKMVSAADDML 254



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 38/186 (20%), Gaps = 33/186 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNN 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +V  +          +      +      Q F  ++           
Sbjct: 61  TTPSGIQFGSGVQIVGTQK---QFTVGNIKVTKGDMDVAITGQGFFQIE------TADGG 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                   L  + +    N     L   +         +          +  + +     
Sbjct: 112 IAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTGSKQLHIGKDGTVTATVGGETEPVEVG 171

Query: 159 EISNLR 164
           +I+ + 
Sbjct: 172 QITLVN 177


>gi|238762358|ref|ZP_04623329.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii
           ATCC 33638]
 gi|238699343|gb|EEP92089.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii
           ATCC 33638]
          Length = 261

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 2/114 (1%)

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                ++              ++         +        L     N   + E   S +
Sbjct: 143 PAGANDLAIGKDGTVTARLGGEAEPAELGQITLVNFVNPAGLEAVGGNM--YKETVASGT 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
               +  +  F  +         V + EE+  +I V+++Y ++ K++   D ML
Sbjct: 201 AVEGVPGEEAFGQLEHGSLEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/186 (8%), Positives = 38/186 (20%), Gaps = 33/186 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNPALWISKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRSPGSPLNQNT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          +             Q F  ++           
Sbjct: 61  ATPNGIQFGSGVKVVGTQK---QFTVGNIKVTKGEFDVAIAGQGFFQIE------TADGG 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                   L  + +    N     L   +   A               ++  +A+     
Sbjct: 112 LAYTRAGNLSINADGVLTNAQGMPLIPQIELPAGANDLAIGKDGTVTARLGGEAEPAELG 171

Query: 159 EISNLR 164
           +I+ + 
Sbjct: 172 QITLVN 177


>gi|118581835|ref|YP_903085.1| hypothetical protein Ppro_3435 [Pelobacter propionicus DSM 2379]
 gi|118504545|gb|ABL01028.1| protein of unknown function DUF1078 domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 259

 Score = 66.6 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  V N I  +      V++  +   LI+ +Q+Y  ++K I   D+M   +L  ++
Sbjct: 202 SAADGVVNKIYSNSLEASNVDMASQFVRLIQTQQAYTANSKTITTADEMTDVVLNLIR 259



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 2/125 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--VTVVTQRSE 58
           MSL +            ++    I  N+ N +   +    T+ +                
Sbjct: 1   MSLTSAMLTGVTGLLANAEDINVIGNNLANVNTVGFKGSRTLFSDLLSTNIGNDSQIGRG 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
            +      + + SS    +               +    +         R + + Y  N 
Sbjct: 61  TQIQKVDNIISQSSFDTTEITSDLAIQGSSFFLLESTTGSRYVTRAGAFRMNEDGYLVNP 120

Query: 119 SEDIL 123
               +
Sbjct: 121 DGYFV 125


>gi|313895889|ref|ZP_07829443.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975314|gb|EFR40775.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 274

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/277 (8%), Positives = 64/277 (23%), Gaps = 36/277 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +   +   +   I  NI N +   +                          
Sbjct: 1   MMRSMFSGVSGLKSHQTRMDVIGNNIANVNTTGFKAGRVTFEDMLSQTLSGAAAPGTTIG 60

Query: 47  -------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V+V +    +    D  +                 +             +
Sbjct: 61  GTNPKQIGLGVSVGSI---DTIFTDGSVQGTGKNTDLA------LSGGNSTFIVKRGEQT 111

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE---VQKIRADADKEI 156
                       +         +  +  ++   E  +     A E   V+  +    K  
Sbjct: 112 YYTRNGAFEFDAKGNYVLPGSGLHVQGWVNKTTEHSKVSTEGAVENIVVETGKMMPPKAT 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
           E    +     +   +          +   A       D +    SE   ++  + +   
Sbjct: 172 EKATYSENLDSTTPMITGYTFSDTRTTPPTAVVRTSANDGMYITASEAQPVTLSLSDGTK 231

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
             V TS   T+  ++P+  +F   ++      ++ ++
Sbjct: 232 RTV-TSGTYTIGRSMPKVTSFAYYDTLGKNMRASSLW 267


>gi|222824019|ref|YP_002575593.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100]
 gi|222539241|gb|ACM64342.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100]
          Length = 264

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 3/182 (1%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S  +      +                         +          N    R    ++ 
Sbjct: 85  SLKQTSTAGLDMAIAGNNGFFQIQMPDGTIAYTRNGQFTKDAEGNIVNSDGYRLLPEMTI 144

Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                  N+A    + +    ++         +        L     N +  +E + S +
Sbjct: 145 PEDATAINVASDGTISVMQPGNTAETQIGQIELVNFINPAGLHALGDNLL--VETDASGA 202

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +  +  F+ I   +     V L EE++ LI  +++Y   +K I  +D ML  + + 
Sbjct: 203 PIAGIAGENGFSPIKHGFVELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQL 262

Query: 479 VK 480
            +
Sbjct: 263 KR 264



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/186 (8%), Positives = 33/186 (17%), Gaps = 31/186 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +   +   Q      NI N +   Y +                        
Sbjct: 1   MLRSLYTAASGMVSQQTQIDVTSNNISNVNTVGYKKSRAEFADLMYQTMKYAGTSTSSTT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                        V            K     ++ +       +     +M         
Sbjct: 61  KHPSGIEVGLGSRVTAISKIFSEGSLKQ--TSTAGLDMAIAGNNGFFQIQM-----PDGT 113

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                  +     E    N     L   +    +    N  +          +  +    
Sbjct: 114 IAYTRNGQFTKDAEGNIVNSDGYRLLPEMTIPEDATAINVASDGTISVMQPGNTAETQIG 173

Query: 159 EISNLR 164
           +I  + 
Sbjct: 174 QIELVN 179


>gi|21231395|ref|NP_637312.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768552|ref|YP_243314.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991639|ref|YP_001903649.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv.
           campestris str. B100]
 gi|325916945|ref|ZP_08179189.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC
           35937]
 gi|21113060|gb|AAM41236.1| flagellar biosynthesis, cell-distal portion of basal-body rod
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66573884|gb|AAY49294.1| flagellar biosynthesis, cell-distal portion of basal-body rod
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733399|emb|CAP51600.1| unnamed protein product [Xanthomonas campestris pv. campestris]
 gi|325536848|gb|EGD08600.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC
           35937]
          Length = 261

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G   A  Q+   +      ++    +       ++   A +       F    + D  
Sbjct: 52  PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +   +  +  I    +  +N  +    G    +   ++         +     +  +   
Sbjct: 112 SAYTRDGTFQINAQGEVVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   ++E   S                 +       VN  EE
Sbjct: 172 ALTLTDFINPSGLQAKGENL--FVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L  +I+ +++Y ++ K I  TD ML  L   V
Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + I  N+ N +   + R                        
Sbjct: 1   MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T                 S     R L      +           S     
Sbjct: 61  QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILG 124
              + + +      S   L 
Sbjct: 118 GTFQINAQGEVVTNSGYPLQ 137


>gi|315121847|ref|YP_004062336.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495249|gb|ADR51848.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 262

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 3/192 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q+  +  V           + +   V   +      D      +  S  I    Q  ++ 
Sbjct: 74  QISSVRNVYTQGELVHTGNSLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTSD 133

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                 G    +    +        +     +S  +      +A       L     N +
Sbjct: 134 GNTLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQLLIANFVNEAGLRNIGDNLV 193

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                + S    +       F HI + Y     V+  +E+S +I  +++Y +++K+I   
Sbjct: 194 TR--TSVSGEAIISSPDDAGFAHIKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIQAA 251

Query: 469 DKMLQTLLEGVK 480
           D+M  +L+  ++
Sbjct: 252 DEM-SSLVSKMR 262



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 38/185 (20%), Gaps = 35/185 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
            F  A    +        I  NI N +   Y R                           
Sbjct: 3   AFTIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKAAGSPSQSADQSV 62

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V + + R          L    +++    + + +  ++            
Sbjct: 63  VPEGINIGSGVQISSVR---NVYTQGELVHTGNSLDLALVGRGWFQVE------TPDKTV 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                       +        + L   +    E      + S + +     ++D +   +
Sbjct: 114 MYTRAGSFNIDSKGQLVTSDGNTLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQ 173

Query: 160 ISNLR 164
           +    
Sbjct: 174 LLIAN 178


>gi|126444737|ref|YP_001061248.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           668]
 gi|126224228|gb|ABN87733.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           668]
          Length = 262

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 2/188 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +    + +   +   FI   + + D    +    +I       +      
Sbjct: 77  TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGDTGYTRAGQLSINAEGLLVNAQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   ++               S         +A       LL    N   ++E
Sbjct: 137 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +       VF  I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254

Query: 473 QTLLEGVK 480
           Q L +  +
Sbjct: 255 QQLSQAAR 262



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 34/143 (23%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +      ++        +  ++  N+ N +   + R   +                    
Sbjct: 1   MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + + +            D  +     ++    + + F  +           ++  
Sbjct: 61  ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGDTGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
               +L  + E    N     L 
Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137


>gi|21242725|ref|NP_642307.1| flagellar basal body rod protein FlgG [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78047584|ref|YP_363759.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294624042|ref|ZP_06702805.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665577|ref|ZP_06730858.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325927973|ref|ZP_08189194.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans
           91-118]
 gi|21108201|gb|AAM36843.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|78036014|emb|CAJ23705.1| flagella basal body rod protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|292601661|gb|EFF45635.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604675|gb|EFF48045.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325541658|gb|EGD13179.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans
           91-118]
          Length = 261

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G   A  Q+   +      ++    +       ++   A +       F    + D  
Sbjct: 52  PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +   +  +  I    +  +N  +    G    +   ++         +     +  +   
Sbjct: 112 SAYTRDGTFQINAQGELVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   ++E   S                 +       VN  EE
Sbjct: 172 ALTLTDFINPSGLQAKGENL--FVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L  +I+ +++Y ++ K I  TD ML  L   V
Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + I  N+ N +   + R                        
Sbjct: 1   MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T                 S     R L      +           S     
Sbjct: 61  QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILG 124
              + + +      S   L 
Sbjct: 118 GTFQINAQGELVTNSGYPLQ 137


>gi|83747652|ref|ZP_00944688.1| FlgG [Ralstonia solanacearum UW551]
 gi|207728348|ref|YP_002256742.1| flagellar basal-body rod protein flgg (distal rod protein)
           [Ralstonia solanacearum MolK2]
 gi|207739735|ref|YP_002258128.1| flagellar basal-body rod protein flgg (distal rod protein)
           [Ralstonia solanacearum IPO1609]
 gi|300696915|ref|YP_003747576.1| FlgG: flagellar basal-body rod protein [Ralstonia solanacearum
           CFBP2957]
 gi|83725704|gb|EAP72846.1| FlgG [Ralstonia solanacearum UW551]
 gi|206591594|emb|CAQ57206.1| flagellar basal-body rod protein flgg (distal rod protein)
           [Ralstonia solanacearum MolK2]
 gi|206593117|emb|CAQ60023.1| flagellar basal-body rod protein flgg (distal rod protein)
           [Ralstonia solanacearum IPO1609]
 gi|299073639|emb|CBJ53159.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum
           CFBP2957]
          Length = 260

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S  I    Q  ++  +       
Sbjct: 82  TQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAVT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +       +       +A       L     N     E   S 
Sbjct: 142 VPQNATSLTIAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +L          ++++Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML+ L +
Sbjct: 200 TANLAAPGANGVGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/183 (6%), Positives = 32/183 (17%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++   +    Q   I  N+ N +   + R   +                   T
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    ++         F  ++              
Sbjct: 61  TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQ------MPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + + +      S   +   V                         +        
Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAVTVPQNATSLTIAKDGTVTVTTPGAVNSTQVGTFQ 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|261341492|ref|ZP_05969350.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316288|gb|EFC55226.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus
           ATCC 35316]
          Length = 261

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 58/212 (27%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G++         +      ++    +       +      +       F      D D
Sbjct: 52  PGGQLDQNNTSPTGIQFGTGVKILGTQKEFSTGNIQNTGQKLDVAITGQGFFQVETSDGD 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +  +     +    +               + +++             ++      
Sbjct: 112 IAYTRAGNFQKNPDGMLTNAQGLPLVPQIELPDNVKDIQIGKDGTVTATVAGETDPVELG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   + E   S      +  +  F  + +       V + EE
Sbjct: 172 QITLVNFVNPAGLEAIGGNL--YRETAASGEAVEGVAGEEAFGQLEQGSLEGSNVQVVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +  +I V+++Y ++ K++   D ML+ + + +
Sbjct: 230 MVDMITVQRAYEMNAKMVSAADDMLKFVTQSM 261



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +      ++        + ++I  N+ N +   + R   M                    
Sbjct: 1   MNPALWISKTGLAAQDAKMSAISNNLANVNTTGFKRDRVMFADLFYQNQRTPGGQLDQNN 60

Query: 45  ISPENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  +   T        K      +      +      Q F  ++          +   
Sbjct: 61  TSPTGIQFGTGVKILGTQKEFSTGNIQNTGQKLDVAITGQGFFQVE------TSDGDIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 + + +    N     L   +                    +  + D     +I+
Sbjct: 115 TRAGNFQKNPDGMLTNAQGLPLVPQIELPDNVKDIQIGKDGTVTATVAGETDPVELGQIT 174

Query: 162 NLR 164
            + 
Sbjct: 175 LVN 177


>gi|329898287|ref|ZP_08272370.1| Flagellar basal-body rod protein flgG [gamma proteobacterium
           IMCC3088]
 gi|328920852|gb|EGG28295.1| Flagellar basal-body rod protein flgG [gamma proteobacterium
           IMCC3088]
          Length = 261

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 2/166 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            A +       F      D      +  S  +    Q  +    L            ++ 
Sbjct: 91  NALDLAIAGRGFFQIQQADGTFAYTRDGSFKLNDQGQVITASGQLMVPAITVPVNSASLT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                         +         +A       L    RN   + E   S   ++ +   
Sbjct: 151 VGRDGTVDAELEAGAGKVTLGQIQLARFINEAGLQSIGRNL--YRETTASGPVEVGVPGI 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +++       VN+ EE+  +I+ +++Y +++K I   D ML
Sbjct: 209 SGIGELTQGSLEASNVNVVEEMVNMIETQRAYEVNSKAISAADGML 254



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/196 (7%), Positives = 44/196 (22%), Gaps = 30/196 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + A    A+        +   I  N+ N +   + +   +                    
Sbjct: 1   MDASLWVAKTGLTAQQMRMTVIANNLANVNTVGFKKDRAVFEDLLYQNVRQPGASADAQT 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + + T               + +  +A+      + F  +++             
Sbjct: 61  IAPTGLMLGTGTRIIATEKIHRQGNMISTENALDLAIAGRGFFQIQQA------DGTFAY 114

Query: 102 HYISKLRDSLESYSKNLSE---DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 + + +      S           +++A   V    T   E++            
Sbjct: 115 TRDGSFKLNDQGQVITASGQLMVPAITVPVNSASLTVGRDGTVDAELEAGAGKVTLGQIQ 174

Query: 159 EISNLRRFLSELTVVN 174
               +     +    N
Sbjct: 175 LARFINEAGLQSIGRN 190


>gi|94495411|ref|ZP_01301991.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. SKA58]
 gi|94424799|gb|EAT09820.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. SKA58]
          Length = 281

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 60/265 (22%), Gaps = 11/265 (4%)

Query: 214 NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK 273
           N +   +        +                      I       +           I 
Sbjct: 26  NVNSTAFKKSKAQFGDIFAASPMQTTHQVAGQGVRVQGITQQFTQGTIETTDKTLDLAIT 85

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                         +     A  +       D      +          +          
Sbjct: 86  GEGFFTVKGEDGTISYTRNGAFSVDNDRFAVDTTGSRIQVFAVDPETGDLTTPPTS---- 141

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                   P   ++        + +         ++    +   Y D          +A 
Sbjct: 142 -----ATGPGDLTDLQIPTTYNNEADGAQLTSVGVSKEGLVSAIYADGSTVYLGQVAMAS 196

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            N+   L +       W     S +  L   +Q +F  ++        V++ +EL  LI 
Sbjct: 197 FNSLEGLRQQGDAH--WTSTVESGNPILGTANQGMFGSVNSGSLERSNVDITDELVQLIA 254

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            ++++  ++K I   + +  T++  
Sbjct: 255 AQRNFQANSKAIEAANTLTTTIVNI 279



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/196 (7%), Positives = 43/196 (21%), Gaps = 22/196 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPENVTV 52
            F  + +    A    ++I  N+ N ++  + +                    + + V V
Sbjct: 2   SFYVSLSGLKGAQADLSAISNNVANVNSTAFKKSKAQFGDIFAASPMQTTHQVAGQGVRV 61

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                         +      +      + F  +                         +
Sbjct: 62  QGITQ---QFTQGTIETTDKTLDLAITGEGFFTV------KGEDGTISYTRNGAFSVDND 112

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            ++ + +   +    +D     +    TSA     +            ++  +  S    
Sbjct: 113 RFAVDTTGSRIQVFAVDPETGDLTTPPTSATGPGDLTDLQIPTTYNNEADGAQLTSVGVS 172

Query: 173 VNDAIKFKTASKHDAH 188
               +    A     +
Sbjct: 173 KEGLVSAIYADGSTVY 188


>gi|330899401|gb|EGH30820.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 348

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/266 (9%), Positives = 47/266 (17%), Gaps = 13/266 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSEN 59
            FN   +    A++       NI N     +                  +          
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                +     S   G    L       +      +                E Y  N S
Sbjct: 62  TAAVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L    +D    VV         +  +R +A        S +    +  +        
Sbjct: 121 NMKLQGYNVDANGSVVT------GALSDLRVNASNLDPKATSTITNSANLNSTTPLPTVA 174

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
              +                       +                                
Sbjct: 175 TFDATDTKSYNNKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTAPD 234

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGS 265
            N  T  S  N +   G  V ++  +
Sbjct: 235 KNDLTFDSSGNLVTTAGAAVPTDSAN 260


>gi|134280724|ref|ZP_01767434.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           305]
 gi|167725932|ref|ZP_02409168.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           DM98]
 gi|125657220|gb|ABN48708.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei]
 gi|134247746|gb|EBA47830.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           305]
          Length = 262

 Score = 66.6 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +    + +   +   FI   + + +    +    +I       +      
Sbjct: 77  TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   ++               S         +A       LL    N   ++E
Sbjct: 137 QPEISIPENAADIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +       VF  I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254

Query: 473 QTLLEGVK 480
           Q L +  +
Sbjct: 255 QQLSQAAR 262



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 33/143 (23%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +      ++        +  ++  N+ N +   + R   +                    
Sbjct: 1   MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + + +            D  +     ++    + + F  +            +  
Sbjct: 61  ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
               +L  + E    N     L 
Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137


>gi|56460250|ref|YP_155531.1| flagellar basal body rod protein FlgG [Idiomarina loihiensis L2TR]
 gi|56179260|gb|AAV81982.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR]
          Length = 262

 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 69/208 (33%), Gaps = 3/208 (1%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             P G+     ++ + ++     ++    +       +    + +       F    + D
Sbjct: 50  NQPGGQSAQDTELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMIDGKGFFQVLMPD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL-INHYCDSFNK 384
            +    +    ++    +  ++ +      ++         +++   ++ +    +  N 
Sbjct: 110 GNISYTRNGQFSLNEEGEIVTSGNGYTIEPAIQIPEDAMSVSISQEGEVTVTQPGNPDNV 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +        L    +N   + E   S +    +       +  +    T  VN+
Sbjct: 170 VVGQINLVNFINPAGLQPMGQNL--YKETAVSGAPLEAVPGVDGMGNTIQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
            EEL  LI+ ++ Y +++K+I   D+ML
Sbjct: 228 TEELVNLIESQRGYEMNSKVISSVDQML 255



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/178 (8%), Positives = 43/178 (24%), Gaps = 16/178 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +   +  + I  N+ N+    + +   +           P   +    
Sbjct: 1   MNPALWISKTGLDAQQRDISVISNNLANSSTIGFKKSRAVFEDLLYQNINQPGGQSAQDT 60

Query: 56  R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  +  H   +       L      K          N       + 
Sbjct: 61  ELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMIDGKGFFQVLMPDGNISYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ-KIRADADKEIELEISNLR 164
             + E            +  I   E+ +    +   EV      + D  +  +I+ + 
Sbjct: 121 SLNEEGEIVTSGNGYTIEPAIQIPEDAMSVSISQEGEVTVTQPGNPDNVVVGQINLVN 178


>gi|255261552|ref|ZP_05340894.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62]
 gi|255103887|gb|EET46561.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62]
          Length = 261

 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 8/211 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +   D  V     QL    R    S          +     + I              
Sbjct: 52  GTINAADGTVLPTGVQLGLGVRPTAVSMILSQGALSATGGDLDVAIEGEGYLEVTLPNGN 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---- 389
            + T     +   +   +   G      +   ++              +  + +      
Sbjct: 112 AAYTRDGGLKRTGDGLIVTSDGFPVVPDITIPRDARSISINAEGEIYGYFTDRVEPELLG 171

Query: 390 --PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              ++G      L     N   +LE + S    +    Q     + + Y     V+  +E
Sbjct: 172 QFTLSGFTNPRGLEAIGNNL--FLETSASGPSIVTEPGQDGLGVLRQGYLEDSSVDPVKE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++ LI+ ++ Y +++K+I   D+ML ++++ 
Sbjct: 230 VTDLIEAQRGYELNSKVITAADQMLSSMVQI 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 27/140 (19%), Gaps = 28/140 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A         +   I  N+ N +   Y  R                          
Sbjct: 3   ALQIAATGMAAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQIARPGTINAADGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L A    +      + +  +           N+    
Sbjct: 63  PTGVQLGLGVRPTAVSMILSQGALSATGGDLDVAIEGEGYLEV------TLPNGNAAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDIL 123
              L+ + +          +
Sbjct: 117 DGGLKRTGDGLIVTSDGFPV 136


>gi|121602345|ref|YP_989400.1| flagellar basal body rod protein FlgG [Bartonella bacilliformis
           KC583]
 gi|120614522|gb|ABM45123.1| flagellar basal-body rod protein FlgG [Bartonella bacilliformis
           KC583]
          Length = 264

 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 35/184 (19%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             + A             I  N+ N +   Y R                           
Sbjct: 5   SLSIAATGMAAQQTNLDVIANNLANINTTGYKRARAEFADLMYVTDRAVGVPNMMNQAIV 64

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ N            +A+        +  +++         N  
Sbjct: 65  PEGVMVGMGVRTAAVRTVN---TQGAFIQTGNALDLAINGNGWFEIQD------PNGNVF 115

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S       L  +++   +           +       K   +AD      +
Sbjct: 116 YTRSGAFNLSETGQVVTLDGNVVQPAITIPIGSKSITVSPDGTVFYKPAEEADPVEAGRL 175

Query: 161 SNLR 164
           + + 
Sbjct: 176 NLVN 179



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 56/191 (29%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            V+     +   +  V       +   A +       +      + +    +  +  +  
Sbjct: 67  GVMVGMGVRTAAVRTVNTQGAFIQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSE 126

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             Q  +    +            ++              ++         +      V L
Sbjct: 127 TGQVVTLDGNVVQPAITIPIGSKSITVSPDGTVFYKPAEEADPVEAGRLNLVNFVNEVGL 186

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   + E   S +       +  +  I ++      V+  +E++ LI  ++SY +
Sbjct: 187 EPVGDNL--FRETPASGAPVPGNPKEDGYGSIMQATLEASNVDPVKEITELITAQRSYEM 244

Query: 461 SNKLIMFTDKM 471
           ++K+I  +D+M
Sbjct: 245 TSKVIQASDEM 255


>gi|86750926|ref|YP_487422.1| hypothetical protein RPB_3817 [Rhodopseudomonas palustris HaA2]
 gi|86573954|gb|ABD08511.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 598

 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/462 (9%), Positives = 107/462 (23%), Gaps = 29/462 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +      +       S    +I  NI N+    + R DT             Q + + 
Sbjct: 1   MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRVDTSFLDLIPQAGTNQQLAGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109
               ++ +  S ++    +        E   A                 +          
Sbjct: 61  TAESRLTNTLSGSVQSASVSTYMAINGEGFFAVQKPGSFSDNSPVFTGVNNYTRRGDFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID                  ++   D     E + +    + 
Sbjct: 121 DKNGYLVNGAGYYLQGVAIDPTTGNP-----VGSTPTVLKFQNDFLPSQETTKINYRANL 175

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                   +  +    +     D  +    ++S          +   + +   D T +  
Sbjct: 176 ARYPLTTKQDTSIPGSELLRAADFANNP--QVSGTTPPPFGDNSRAGLQINAKDATPITG 233

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +     +  + I ++G  ++         G   A     DS +    ++
Sbjct: 234 ATTLSGAASTDSIGVNFAVGDTIVVNGTTITFTA----SGGTDDATNIPVDSTITNLLSK 289

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +D ++     S      +  ++     L I        +         I           
Sbjct: 290 IDAISGGGAASTVTSGALELHTGTASDLTITSTSAAFASLGLTSPFSVIRTGGGTVGTGQ 349

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR---- 405
            +            +      Y          F    I     G   +     + +    
Sbjct: 350 VIGTDNQTFLDESISGGATTAYDGSGAPVNVQFRWAKIDSATLGTGHSDVWNLFYQVNPD 409

Query: 406 ---NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
               ++ W   N + + +   +   V   ++ +     GV+L
Sbjct: 410 ATGTAVAWQNVNTNFTFNSSGQMNPVIGQLTLTNLTVSGVSL 451



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/425 (8%), Positives = 106/425 (24%), Gaps = 22/425 (5%)

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
           ++               +  +       +P  +    R  L+  +K+ +      T+   
Sbjct: 181 TTKQDTSIPGSELLRAADFANNPQVSGTTPPPFGDNSRAGLQINAKDATPITGATTLSGA 240

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
           A       N +  +   +            ++    +   + + + +    A        
Sbjct: 241 ASTDSIGVNFAVGDTIVVNGTTITFTASGGTDDATNIPVDSTITNLLSKIDAISGGGAAS 300

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
                 L         ++    +     +  +   ++  T    +   ++      +  +
Sbjct: 301 TVTSGALELHTGTASDLTITSTSAAFASLGLTSPFSVIRTGGGTVGTGQVIGTDNQTFLD 360

Query: 251 PIFIDGVVVSSN---------------QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                G   + +                 + +  G                   +     
Sbjct: 361 ESISGGATTAYDGSGAPVNVQFRWAKIDSATLGTGHSDVWNLFYQVNPDATGTAVAWQNV 420

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               +F+    +      +    +      L N      +  +        N    +   
Sbjct: 421 NTNFTFNSSGQMNPVIGQLTLTNLTVSGVSLGNVTMSFGTGGLTQFSDTNGNVQVNQLQQ 480

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                      +++    ++  Y +  N +     VA  N    L               
Sbjct: 481 DGYAAGQLTSVSVSNEGRVVGSYSNGRNIDLAEVSVATFNGANFLKRI-------DGGAF 533

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +++           IS S   +   ++ +E + LI  +Q+Y+ + K+I   + M+Q L
Sbjct: 534 EVTNESGEALYGKGGSISGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDL 593

Query: 476 LEGVK 480
           L  ++
Sbjct: 594 LNVMR 598


>gi|296122947|ref|YP_003630725.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM
           3776]
 gi|296015287|gb|ADG68526.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM
           3776]
          Length = 266

 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 56/215 (26%), Gaps = 2/215 (0%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
              +  +     I  +     +    ++             +           +    + 
Sbjct: 53  PGTQDTLGNYTPIGTAAGLGVRVAGTQIDFSQGALLETGRQLDMAITGDGFFMVRGNNQL 112

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
              +  +    +        ++   L D          ++   A     +     +    
Sbjct: 113 FYTRRGEFTVNSNGDVVLASADIGRLIDPPINIPPDTVDIGISAEGIVSVIQAGSTVQNQ 172

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +A       L +   +       + S    +          I + +     V   
Sbjct: 173 VGQIQLARFINPEGLYQAGESLYAV--TDASGQPLISNPGDQGLGLIRQGFLEISNVEPA 230

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EL  LIK +++  +++++I  +D++LQ +    +
Sbjct: 231 NELVDLIKTQRNVELNSQVIQASDQLLQLITNLRR 265



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/175 (9%), Positives = 34/175 (19%), Gaps = 14/175 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48
           L      A +          +I  N+ NA    + R  T                     
Sbjct: 2   LYRAMYTAASGMQAYMFNLDTIANNLANAGTNGFKRSRTDFEDLYYQYYKLPGTQDTLGN 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
              + T       +    +     A+ +           +        N        +  
Sbjct: 62  YTPIGTAAGLGVRVAGTQIDFSQGALLETGRQLDMAITGDGFFMVRGNNQLFYTRRGEFT 121

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +        S DI                   + E       A   ++ ++  +
Sbjct: 122 VNSNGDVVLASADIGRLIDPPINIPPDTVDIGISAEGIVSVIQAGSTVQNQVGQI 176


>gi|262173356|ref|ZP_06041033.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451]
 gi|261890714|gb|EEY36701.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451]
          Length = 250

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 51/180 (28%), Gaps = 2/180 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V     ++      +   +   F      D      +     +       ++     
Sbjct: 66  TQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGLPL 125

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +        + ++              D   +      +A       L     N   + E
Sbjct: 126 EPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPAGLEAVGGNL--FRE 183

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + S   +  +  Q     I +       V + EE+  +I  +++Y ++ K++  TD ML
Sbjct: 184 TDASGLAEELVAGQDGTGSIKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSATDDML 243



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/140 (7%), Positives = 27/140 (19%), Gaps = 27/140 (19%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SPENVTVVTQ 55
                 +  +I  N+ N +   + R   +                      P  V + + 
Sbjct: 1   MAAQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVNELPTGVQLGSG 60

Query: 56  RSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                             +  +    + Q F  ++                  +   + E
Sbjct: 61  VRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIEN------SDGQIMYTRNGQFHVNSE 114

Query: 113 SYSKNLSEDILGKTVIDNAE 132
               N     L   +     
Sbjct: 115 GLMVNSQGLPLEPQIQIPDN 134


>gi|77918760|ref|YP_356575.1| flagellar basal body rod protein FlgG [Pelobacter carbinolicus DSM
           2380]
 gi|77544843|gb|ABA88405.1| flagellar biosynthesis protein [Pelobacter carbinolicus DSM 2380]
          Length = 261

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 4/184 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + +  +      + +          I   +       +     +   R   S        
Sbjct: 80  VFTTGDFQQTGNDLDIAIEGSGFFEITLANGDTAYTRAGAFKKDGTGRIVTSDGYPLSPE 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +   G    +    D  N         +   +    L     N   + E   
Sbjct: 140 IIIPENATQVSIGNYGAVEVLLDGQNTPTQIGTITLTRFSNPAGLNSIGHNL--FTETPT 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +       +  F  +S+ +     V++ EE+  +I  +++Y I++K I   D+MLQ  
Sbjct: 198 TGTPVTGNPGEDGFGSLSQGFLEGSNVSIMEEMVNMIAGQRAYEINSKAIKTADEMLQMT 257

Query: 476 LEGV 479
              V
Sbjct: 258 NNLV 261



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/162 (4%), Positives = 26/162 (16%), Gaps = 27/162 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPENV 50
           ++     +             I  N+ N ++  + +                 +     V
Sbjct: 1   MIRALWTSATGMEAQQVNMDVIAHNLANVNSAGFKKSRADFQDILYQTVKVAGSDGSSGV 60

Query: 51  T---------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  K           + +        F  +           ++  
Sbjct: 61  EQPTSIQVGLGSRVAAIQKVFTTGDFQQTGNDLDIAIEGSGFFEI------TLANGDTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                 +              L   +I        +      
Sbjct: 115 TRAGAFKKDGTGRIVTSDGYPLSPEIIIPENATQVSIGNYGA 156


>gi|89902479|ref|YP_524950.1| flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118]
 gi|89347216|gb|ABD71419.1| Flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118]
          Length = 260

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R       ++     +       F    + D      +  S  +    Q  +     
Sbjct: 76  ATSRSFAQGNLQQSGNKLDVAIQGNGFFQVTMPDGTTNYTRDGSFQVSSTGQLVTATGLP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G        ++                  +      +A       L    +N     
Sbjct: 136 IANGVTVPANATSIAIAGDGTVTAQVPGTPTPQGIGSISLASFVNPAGLDPKGQNLYA-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S   +           + + Y  T  VN+ +EL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ESTASGQPNSGTPGADGMGALMQGYVETSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTL 475
           LQ L
Sbjct: 254 LQKL 257



 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 31/152 (20%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++        Q   I  N+ N     + R   +                   +
Sbjct: 1   MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKRASAVFEDLMYQNLRQAGSNSSEQS 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +++     L    + +        F  +            +  
Sbjct: 61  QLPTGLQVGLGVRTVATSRSFAQGNLQQSGNKLDVAIQGNGFFQV------TMPDGTTNY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 + S        +   +   V   A  
Sbjct: 115 TRDGSFQVSSTGQLVTATGLPIANGVTVPANA 146


>gi|160896077|ref|YP_001561659.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1]
 gi|160361661|gb|ABX33274.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1]
          Length = 260

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 2/187 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             +R  +    ++   A +       F    + D      +  S  +    Q  +     
Sbjct: 76  ATSRNFLQGALQQSNNALDVAIDGNGFFQVNMPDGTTAYTRDGSFQVDAQGQLVTASGMP 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G    +    V         +     +  +      ++       L    +N     
Sbjct: 136 IANGVTIPQGATKVSISPEGVVSVTMAGQAAPQQVGNIAMSQFINPAGLEPRGQNLFT-- 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S               I + Y     VN+ +EL  +I+ +++Y +++K I  +D+M
Sbjct: 194 ETASSGQPQQGQPGVNGMGMIKQGYLEGSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQM 253

Query: 472 LQTLLEG 478
           L  L + 
Sbjct: 254 LAKLAQL 260



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 28/149 (18%), Gaps = 33/149 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     ++        Q   I  N+ N     Y R   +                    
Sbjct: 1   MINSLFISKTGMEAQQTQLDVISHNLANVSTTGYKRASAVFEDLIYQNLRQSGAQTTEQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L   ++A+        F  +      +     
Sbjct: 61  QLPTGLHLGLGVRTVATSRN---FLQGALQQSNNALDVAIDGNGFFQV------NMPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTV 127
           +        +   +      S   +   V
Sbjct: 112 TAYTRDGSFQVDAQGQLVTASGMPIANGV 140


>gi|158422258|ref|YP_001523550.1| flagellar basal body rod protein FlgG [Azorhizobium caulinodans ORS
           571]
 gi|158329147|dbj|BAF86632.1| flagellar basal-body rod FlgG protein [Azorhizobium caulinodans ORS
           571]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 34/184 (18%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    N        I  NI N +   + R     +                     
Sbjct: 3   ALAIAATGMNAQQTNVEVIANNIANINTTGFKRARAEFSDLLYQSERTQGIPNRDGGQAI 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V  R          L    + +      +    +            + 
Sbjct: 63  PEGAMLGLGVRTVGIR---NLHTQGPLTQTGNTLDLAVNGRGMFEI------TTPDGQTV 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S           ++   +           N S +    I    + ++  ++
Sbjct: 114 YTRAGSFNRSATGQLVTSDGYVINPAIQFPNNATEIQVNESGQVYATIPNQTNPQLLGQL 173

Query: 161 SNLR 164
           + + 
Sbjct: 174 TLVN 177



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +     +              D      +  S       Q  ++  ++ +    
Sbjct: 82  TQGPLTQTGNTLDLAVNGRGMFEITTPDGQTVYTRAGSFNRSATGQLVTSDGYVINPAIQ 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  ++              +  +      +        +     N   + E   S 
Sbjct: 142 FPNNATEIQVNESGQVYATIPNQTNPQLLGQLTLVNFANESGMEPLGNNL--YRETLASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              + +   V F  I + Y     V+  +E++ LI  ++SY +++K+I   D+M +T+  
Sbjct: 200 QPIVGVAGDVGFGKIQQGYLEASNVDPVKEITELIAAQRSYEMNSKVIQAADEMSKTVST 259

Query: 478 GVK 480
           G++
Sbjct: 260 GIR 262


>gi|32477561|ref|NP_870555.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1]
 gi|32448115|emb|CAD77632.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1]
 gi|327543123|gb|EGF29559.1| flagellar hook protein FlgE [Rhodopirellula baltica WH47]
          Length = 811

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/455 (8%), Positives = 95/455 (20%), Gaps = 35/455 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           M L +    A    + A  Q   I  N+ NA    +   D +                  
Sbjct: 1   MGLQSALTTALTGLSAAETQIDVIGNNLANAQTVGFKSSDAVFATQFLQTLSLGAGPSAN 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V    + +       +   SS+         F  ++          
Sbjct: 61  NGGTNPRQIGLGVQVAEIAANHNQ---GTIEISSSSSDLAIQGDGFFQVQ------AADG 111

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                     + + ++   N +   L    ID  E+     ++       +      +  
Sbjct: 112 EKLYTRNGIFKLNSDAELVNATGQRLLGYGID--EQFRLQTDSLVPLSVPLGTKTVAKAT 169

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +S       E  V       ++    D+         +  + S I   +++       
Sbjct: 170 ENVSFEGTLTPEGDVATAGQVIESLHLGDSQVPRPDASGVSIESSPIADHTSVTGTVGAG 229

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
            +        F  V    N    ++    +      +D   +  +         +     
Sbjct: 230 SLPAGTYQYKFALVDASGNESAPSAARAFTVGANGNVDLGNLPQDPLGG-DFPTVNIYRT 288

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
             +     +               +       N + + G +                S  
Sbjct: 289 GPNGTEFEYLASAAAGGTFNDDGSTALSGTPINEDTLTGNYTYMVTYYSSGDPESRPSSF 348

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +          +        +                 N   D  N   + +   G    
Sbjct: 349 LGPKSVVDGRITLSDFPTPPTPPAGGGFPAYDSIRIYRNLAGDQNNFYLVGEVAPGDTFT 408

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            +  +   + +        D     + S  +   +
Sbjct: 409 DSATDAEISDLTDPGNQLLDMDGPAVNSNTLLTDV 443



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/416 (8%), Positives = 110/416 (26%), Gaps = 13/416 (3%)

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
               ++      L      L +M     + N   T  + +   + E      +    G+ 
Sbjct: 407 FTDSATDAEISDLTDPGNQLLDMDGPAVNSNTLLTDVLRRDGLTYEQVFSEGTLSYTGRK 466

Query: 127 VIDNAEEVVQNFNTSA--REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
              N         +++  +++    +DA     L++ +          +        A  
Sbjct: 467 GGANLGTKELEITSTSTMQDLLDFISDASGIQTLQVDSSNPIPRSDNNITGESGDLVAGA 526

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
           +     +       +  +  I +S     +    + T +              ++    +
Sbjct: 527 YIQDGKIRLVSNNGEANAVDIELSAFRLTDELGQISTPN--------LAFGTLQEAIGQS 578

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
            +S+       GV ++    + +     +A +    +  P            +     + 
Sbjct: 579 ASSDFVVYDSLGVPINVRVSATLESRTDQATIYRWYADSPDNSVS-GSTDITVGTGLIQF 637

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           D               +          Q   +   V+       +        S+  + N
Sbjct: 638 DGNGNFVTATEETISINRQGLPSVSPMQFEMDFSLVSGLATDEATLAATQQDGSEPGVLN 697

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              +     +   + +  +++     +A       L   AR    + E   +        
Sbjct: 698 SFIVGEDGTIRGVFSNGISRDLGQLQLARFANPAGLE--ARGLNLYAEGVNTGLPVTGQP 755

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +     +          ++ ++L  L+     Y  ++++I  T +++  LL   +
Sbjct: 756 GENGIGTVIGGALELSNTDIGKDLVELVLASTQYRGNSRVITTTQQLIDELLNLRR 811


>gi|319403961|emb|CBI77549.1| Flagellar basal-body rod protein flgG [Bartonella rochalimae ATCC
           BAA-1498]
 gi|319406976|emb|CBI80613.1| Flagellar basal-body rod protein flgG [Bartonella sp. 1-1C]
          Length = 264

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 2/168 (1%)

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
           +   A +       +      + +    +  +  +    Q  +    L            
Sbjct: 90  QTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIVTLEGNLVQPVITIPIGSK 149

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           NV              D          +      V L     N   + E   S +     
Sbjct: 150 NVTVSPDGTVYYQTDTDPNAVEAGRFRLVNFVNEVGLEPIGDNL--FRETQASGAPVPGD 207

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +  +  I ++      V+  +E++ LI  ++SY +++K+I  +D+M
Sbjct: 208 PKEDGYGSIMQAMLEASNVDPVKEMTELIAAQRSYEMNSKVIQASDEM 255



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/255 (7%), Positives = 46/255 (18%), Gaps = 41/255 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  N+ N +   + R                           
Sbjct: 5   SLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQAVI 64

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ N            +A+        +  +++         N  
Sbjct: 65  PEGAMIGMGVRTAAVRTIN---TQGAFVQTGNALDLAINGNGWFEIQD------PNGNVF 115

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    S       L  +    +    I +    V    T   +        +    
Sbjct: 116 YTRSGAFNLSETGQIVTLEGNLVQPVITIPIGSKNVTVSPDGTVYYQTDTDPNAVEAGRF 175

Query: 158 LEISNLRRFLSELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             ++ +     E    N                  D        + + S +  +  +   
Sbjct: 176 RLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKEDGYGSIMQAMLEASNVDPVKEMTEL 235

Query: 214 NNDMVVYTSDGTTLF 228
                 Y  +   + 
Sbjct: 236 IAAQRSYEMNSKVIQ 250


>gi|167576664|ref|ZP_02369538.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           TXDOH]
          Length = 258

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            S         +A       LL    N   ++E   S   +       VF  I +     
Sbjct: 160 ASSPSEVGQLQLANFVNPAGLLALGDNL--YMETVASGPPNEGEAGTDVFGKIKQGALEG 217

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V + EE+  +I  +++Y ++ K++   D MLQ L +  +
Sbjct: 218 SNVQVVEEMVDMIAAQRTYEMNTKVLSAADNMLQHLSQAAR 258



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/139 (7%), Positives = 31/139 (22%), Gaps = 27/139 (19%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ISPE 48
              ++        +  ++  N+ N +   + R   +                     SP 
Sbjct: 1   MWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPS 60

Query: 49  NVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
            + + +            D  +     ++      + F  +            +      
Sbjct: 61  GIQMGSGTRIVGTQKVFTDGSVQTTGRSLDVAVTGKGFLQVL------MANGETGYTRAG 114

Query: 106 KLRDSLESYSKNLSEDILG 124
           +L  + E    N     L 
Sbjct: 115 QLSINAEGLLVNAQGLPLQ 133


>gi|157165544|ref|YP_001467096.1| flagellar basal body rod protein FlgG [Campylobacter concisus
           13826]
 gi|112799947|gb|EAT97291.1| flagellar basal-body rod protein FlgG [Campylobacter concisus
           13826]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 58/189 (30%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + ++    + ++     +       F    + D      +  +  +  N    ++  + 
Sbjct: 76  AINKIFSQGYFKETSNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDANGTIVNSDGYQ 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +         +    ++         +A       L     N   +L
Sbjct: 136 LIPQITVPANATQISIGTDGTVSVLQAGETDMAQIGQIELANFINPAGLHSMGDN--NYL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + + S    + +        I + +     V L EE++ LI  +++Y  ++K I  +D M
Sbjct: 194 QTSASGDVVVGVAGLDGLGTIRQGFVEMSNVQLVEEMTDLITGQRAYEANSKAITTSDSM 253

Query: 472 LQTLLEGVK 480
           L+ +    +
Sbjct: 254 LEIVNGLKR 262



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 35/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A         Q      NI N +   Y +                       T
Sbjct: 1   MMRSLYTAATGMIAEQTQIDVTSHNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + V         NK          S+ +        F  ++           +  
Sbjct: 61  TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQIQ------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +        N     L   +   A     +  T          + D     +I 
Sbjct: 115 TRNGAFKLDANGTIVNSDGYQLIPQITVPANATQISIGTDGTVSVLQAGETDMAQIGQIE 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|297616912|ref|YP_003702071.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144749|gb|ADI01506.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 261

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/146 (7%), Positives = 25/146 (17%), Gaps = 30/146 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     +            +I  NI N +   Y +                        
Sbjct: 1   MLRALYTSSTGMFAQQLNIDNIAHNIANVNTTGYKKSRVEFQDLIYQMLRRPVANDTTVQ 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     ++         L    + +      Q+F  ++             
Sbjct: 61  PSGLWVGLGVKPSATQTI---FSQGNLTPTDNPLDVAIQGQAFFRVQS-----PTNEEYL 112

Query: 101 THYISKLRDSLESYSKNLSEDILGKT 126
                  +   E          +   
Sbjct: 113 YTRDGSFKLDSEGNLVTTDGYYVVGV 138



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 51/211 (24%), Gaps = 10/211 (4%)

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           + +            +      + +          + P      G      +        
Sbjct: 53  VANDTTVQPSGLWVGLGVKPSATQTIFSQGNLTPTDNPLDVAIQGQAFFRVQSPTNEEYL 112

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP------- 390
              +  ++ +                +  +  GY   I        K    D        
Sbjct: 113 YTRDGSFKLDSEGNLVTTDGYYVVGVDTIDPEGYDVTIAPDGTVTYKMPGQDEPVEAGQV 172

Query: 391 -VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +A       L +   N   +     S               +   Y     + + EE+ 
Sbjct: 173 ELAKFTNPAGLEKIGGNL--YRPTASSGEAIDWDPEADTTVSLHAGYLEAANIQIVEEMV 230

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  +++Y I++K+I   D+ML       +
Sbjct: 231 NLITAQRAYEINSKVIQSADEMLGMAANLRR 261


>gi|294013088|ref|YP_003546548.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S]
 gi|292676418|dbj|BAI97936.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 4/178 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +    +      +          ++  D  +    +       +     S        
Sbjct: 81  INAQGTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFTTTAEGVVVTSDGLPLIPQ 140

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       G    ++                +A       L     N +   E   
Sbjct: 141 ITVPEGATSVTIGNDGTVSATLQGQTEPTQLGQIELASFMNPGGLTSVGGNLL--KESAA 198

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           S +  + +        +   Y  T  VN+ EEL  +I+ +++Y +++K+I  TD+MLQ
Sbjct: 199 SGTPQVGVAGLDGRGVVRAGYLETSNVNVVEELVDMIETQRAYEVNSKMIKATDEMLQ 256



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/183 (6%), Positives = 35/183 (19%), Gaps = 33/183 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
             A  + A+   +  + +   I  N+ N +   + R                        
Sbjct: 2   TNAALHVARTGLDAQNTKMRVIANNLANVNTTGFKRDRADFETLAYQQIVAAGANSDSEN 61

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +      N       L+   + +        +  +++         +
Sbjct: 62  KFATGLNLGSGVALQGTSKIN---AQGTLNQTGNTLDMAIEGSGYFQVQQ------PDGS 112

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                      + E          L   +                    ++   +     
Sbjct: 113 IAYTRAGNFTTTAEGVVVTSDGLPLIPQITVPEGATSVTIGNDGTVSATLQGQTEPTQLG 172

Query: 159 EIS 161
           +I 
Sbjct: 173 QIE 175


>gi|296127366|ref|YP_003634618.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM
           12563]
 gi|296019182|gb|ADG72419.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM
           12563]
          Length = 264

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E   S            F  I + +     V + +E+  +I  +++Y +++K +  +D
Sbjct: 194 YKETIASGPAFEGEPGANGFPRIHQGFVEMSNVKVVDEMVDMIVAQRAYEMNSKAVQTSD 253

Query: 470 KMLQTLLEGVK 480
            +L T++   +
Sbjct: 254 NLLATVVNLKR 264



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/159 (7%), Positives = 34/159 (21%), Gaps = 33/159 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +  N    +  +I  N+ N +   Y +                        
Sbjct: 1   MVRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  +   V   + +          L A  + +      + F  +           +
Sbjct: 61  VRPVGLQTGLGVKSASTQKMFDQ---GSLQATGNKLDLALEGEGFFQVL------MPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                    +          +   L   ++     +V+ 
Sbjct: 112 VSYTRDGSFKIDANGQMVTSNGYRLVPEIVFPENFLVEQ 150


>gi|289666050|ref|ZP_06487631.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670510|ref|ZP_06491585.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 261

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G   A  Q+   +      ++    +       ++   A +       F    + D  
Sbjct: 52  PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +   +  +  I    Q  +N  +    G    +   ++         +     +  +   
Sbjct: 112 SAYTRDGTFQINAQGQLVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   ++E   S              +  +       VN  EE
Sbjct: 172 ALTLTDFINPSGLQAKGENL--FVETTASGPAQNGTPGLNGLGNTVQGALEGSNVNTVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L  +I+ +++Y ++ K I  TD ML  L   V
Sbjct: 230 LVSMIETQRAYEMNAKAISTTDSMLGYLNNNV 261



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + I  N+ N +   + R                        
Sbjct: 1   MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T                 S     R L      +           S     
Sbjct: 61  QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILG 124
              + + +      S   L 
Sbjct: 118 GTFQINAQGQLVTNSGYPLQ 137


>gi|167567752|ref|ZP_02360668.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis
           EO147]
 gi|167574703|ref|ZP_02367577.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis
           C6786]
          Length = 258

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            S         +A       LL    N   ++E   S   +        F  I +     
Sbjct: 160 ASELTEVGQVQLADFVNPAGLLSIGDNL--YMETVASGPPNEGDPGTDAFGKIKQGSLEA 217

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V + +E+  +I  +++Y ++ K++   D MLQ L +  +
Sbjct: 218 SNVKVVDEMVEMIAAQRTYEMNTKVLSAADSMLQYLAQAAR 258


>gi|329849714|ref|ZP_08264560.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum
           C19]
 gi|328841625|gb|EGF91195.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum
           C19]
          Length = 263

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 61/189 (32%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + R++            +       +    +   +    +  + ++    +  +   +L
Sbjct: 76  SVYRIMQQGSMTLTQNQYDVAIEGKGYFQILMPSGETAYTRAGNFSVDDQGRLVTEDGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                   +   +V               +          A       L     N   +L
Sbjct: 136 VQPSVTIPQDAIDVSISKTGQIQATQQGQTAPTTVGQLQTATFFNEAGLDAIGDNL--FL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S + ++     V F  + + Y+    V+   E++ LI  +++Y +++K+I   D+M
Sbjct: 194 ESGASGAPNVSTPGDVGFGTLLQGYTEASNVDAVGEITALIVAQRAYEMNSKVITTADQM 253

Query: 472 LQTLLEGVK 480
           LQT  +  +
Sbjct: 254 LQTASQIAR 262



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/172 (4%), Positives = 30/172 (17%), Gaps = 34/172 (19%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A             I  NI N +   + ++                          
Sbjct: 3   ALRTATTGMAAQQLNVEVISNNIANMNTVGFKKQRAEFQDLLYQNIERMGSQSSDAGTVV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +      +    +        + +  +            + 
Sbjct: 63  PTGIQVGAGVKAGSVYRIMQQ---GSMTLTQNQYDVAIEGKGYFQIL------MPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                      +         ++  +V    + +  + + + +     +   
Sbjct: 114 YTRAGNFSVDDQGRLVTEDGYLVQPSVTIPQDAIDVSISKTGQIQATQQGQT 165


>gi|148980300|ref|ZP_01815987.1| putative flagellar basal-body rod protein [Vibrionales bacterium
           SWAT-3]
 gi|145961319|gb|EDK26629.1| putative flagellar basal-body rod protein [Vibrionales bacterium
           SWAT-3]
          Length = 250

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
           +     +        L     N   ++E   S      +        + +       V +
Sbjct: 158 DLGQITIVKFMNPAGLSAQGGNL--FVETEGSGEAVELVAGTEGSGQLKQGALEGSNVQV 215

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            EE+  +I  +++Y +S K++   D+MLQ +
Sbjct: 216 VEEMVDMIATQRAYEMSAKMVSAADEMLQYI 246



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/193 (8%), Positives = 39/193 (20%), Gaps = 27/193 (13%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------------VVT 54
                 +  +I  N+ N +   + R   +      +V                       
Sbjct: 1   MAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELNEHPTGIQLGNG 60

Query: 55  QRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            R            +   +       L   F  ++                  + + + +
Sbjct: 61  VRVVGTEKVFTQGNIQNTNQQFDLAILGDGFFQIEN------SDGELLYTRNGQFQTNSD 114

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
               N     L   V+   E  + +          I    + E   +I+ ++        
Sbjct: 115 GQLVNTQGYPLIPEVVIPPEATLVSITADGVVSATIPGQVNPEDLGQITIVKFMNPAGLS 174

Query: 173 VNDAIKFKTASKH 185
                 F      
Sbjct: 175 AQGGNLFVETEGS 187


>gi|85706167|ref|ZP_01037262.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217]
 gi|85669331|gb|EAQ24197.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217]
          Length = 261

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 8/206 (3%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              +   D  V     QL    R    S          +     + I             
Sbjct: 51  AGTINATDGTVLPTGVQLGLGVRPAAISVQLAQGSLSQTNGDLDVAIEGNGYLEVTLPSG 110

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH------YCDSFNKNF 386
             + T     +  ++   +   G      +   ++                  ++  +  
Sbjct: 111 QAAYTRDGALKRSADGIIVNSEGFPVAPEITIPEDARSITINAEGEVFAFFQDNAEAQQL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +AG +    L     N   ++E   S   ++    Q     + + Y     V+   
Sbjct: 171 GQLDLAGFSNPKGLEAIGSNL--FVETEASGPANVTTAGQDGLGTLRQGYLEDSSVDPVR 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E++ LI+ ++ Y ++ K+I   D+ML
Sbjct: 229 EITELIEAQRGYELNAKVITAADQML 254



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/172 (8%), Positives = 35/172 (20%), Gaps = 28/172 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
           +   A         +  +I  N+ N     Y  R                          
Sbjct: 3   ILKIAATGMAAQQMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTINATDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L   +  +        +  +            +    
Sbjct: 63  PTGVQLGLGVRPAAISVQLAQGSLSQTNGDLDVAIEGNGYLEV------TLPSGQAAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
              L+ S +    N     +   +    +      N         + +A+ +
Sbjct: 117 DGALKRSADGIIVNSEGFPVAPEITIPEDARSITINAEGEVFAFFQDNAEAQ 168


>gi|85859196|ref|YP_461398.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB]
 gi|85722287|gb|ABC77230.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB]
          Length = 260

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 48/183 (26%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I S  +      + +          + D    +                N   L+    V
Sbjct: 80  IFSQGDYQQTGNSFDWAIEGDGFFQLDDNGTTVYTRAGNFKVNRDGVLCNTDGLQLIPEV 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S         L           +          +A       L    RN         S 
Sbjct: 140 SIPQDAVTFTLDSGGTWTAADENGNTLATGRIELAKFINPAGLSSIGRNLFEK--TEGSG 197

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                   +      S+ +     VN+ +E+  +I  +++Y I++K I+  D ML  +  
Sbjct: 198 EPLTGNPGEDGLGTTSQRFLEMSNVNVIDEMVKMIVGQRAYEINSKSIVTADNMLSMINN 257

Query: 478 GVK 480
             K
Sbjct: 258 LKK 260



 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 32/155 (20%), Gaps = 14/155 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           ++     A         +   +  N+ N +   + +                   T S  
Sbjct: 1   MIRSLWTAATGMQAQQVEQDVVANNLANVNTVGFKKSRADFQDLMYQLSTKAGSETSSGN 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            +TV  +                    Q      +    +     D    +        +
Sbjct: 61  QLTVGIEIGMGVKPVATQKIFSQGDYQQTGNSFDWAIEGDGFFQLDDNGTTVYTRAGNFK 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
            + +    N     L   V    + V    ++   
Sbjct: 121 VNRDGVLCNTDGLQLIPEVSIPQDAVTFTLDSGGT 155


>gi|84624090|ref|YP_451462.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161898985|ref|YP_201214.2| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|166712060|ref|ZP_02243267.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188576758|ref|YP_001913687.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576950|ref|YP_001913879.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84368030|dbj|BAE69188.1| flagellar biosynthesis cell-distal portion of basal-body rod
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521210|gb|ACD59155.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521402|gb|ACD59347.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 261

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 2/212 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
           P G   A  Q+   +      ++    +       ++   A +       F    + D  
Sbjct: 52  PGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGT 111

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +   +  +  I    Q  +N  +    G    +   ++         +     +  +   
Sbjct: 112 SAYTRDGTFQINAQGQLVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +        L     N   ++E   S              +  +       VN  EE
Sbjct: 172 ALTLTDFINPSGLQSKGENL--FVETTASGPAQNGTPGLNGLGNTVQGALEGSNVNTVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L  +I+ +++Y ++ K I  TD ML  L   V
Sbjct: 230 LVSMIETQRAYEMNAKAISTTDAMLGYLNNNV 261



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 21/140 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A+   +    + + I  N+ N +   + R                        
Sbjct: 1   MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T                 S     R L      +           S     
Sbjct: 61  QLPTGLQLGTGVRVVSTF---KGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILG 124
              + + +      S   L 
Sbjct: 118 GTFQINAQGQLVTNSGYPLQ 137


>gi|323165587|gb|EFZ51374.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G]
          Length = 143

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 27/135 (20%), Gaps = 33/135 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +++    A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V     +       L   +++       Q F  +           +
Sbjct: 61  TLPSGLQIGTGVRPVATERLHSQ---GNLSQTNNSKDVAIKGQGFFQVM------LPDGS 111

Query: 99  SPTHYISKLRDSLES 113
           S        +     
Sbjct: 112 SAYTRDGSFQVDQNG 126


>gi|325109020|ref|YP_004270088.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM
           5305]
 gi|324969288|gb|ADY60066.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM
           5305]
          Length = 572

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/467 (8%), Positives = 112/467 (23%), Gaps = 25/467 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M L +    + N      Q    +  NI NA    +     +          V  R   +
Sbjct: 1   MGLTSALTTSLNGLALNEQTIDVLGNNIANAGTNGFKASSVLFETQLARTLSVGSRPTTE 60

Query: 61  NMFDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           N                 +      ++             +     +  N +        
Sbjct: 61  NGGTNPQQIGLGATSAAILTDFSQGSVTSSTSPSDLAIQGDGFFIVNGSNGNLYTRAGNF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS----AREVQKIRADADKEIELEISNL 163
             S E          +    +D    +V            ++   +   +  I   + + 
Sbjct: 121 NLSSEDSLVTPEGLRVQGYGVDEDFNLVTTQLADINIPLGDLVVAQQTRNVHIGGAMLST 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
               ++ +++        A+             LL  +      + +  N + +     +
Sbjct: 181 GDLATQSSILRSVDSLTAAASSTFAADPASAATLLNSLYVEGSATPMFSNGDVVSFAPRE 240

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR---- 279
           G  L +     ++     S  +T   + + I        +G   P+ ++ A  QI     
Sbjct: 241 GGRLLDPQTLTVDATTSLSDLMTLMGDTLGIVSGGDVPQEGGVDPQVRLNAAGQIEVIGN 300

Query: 280 ----DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
               + V     + +   +     +       A ++     +        L  ++   ++
Sbjct: 301 RGEVNDVSITLGDMIVNNSVTGATTVDLPFNKAQSANGESSITDFVVFDSLGQEVNVKMT 360

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             +       +   ++ +    S            +         +  +  I        
Sbjct: 361 TYMEGRDASSTTFRYILESVDDSDSDTIVGTGTFTFDGEGVITNGAVQQFSIDRNNTAAV 420

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           + + +        G    +   +  L  +       +S    +  GV
Sbjct: 421 SPMQISIDFSKLTGISTASAGSAITLQHQDGSNPGTLSRFVIDESGV 467



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/393 (9%), Positives = 91/393 (23%), Gaps = 11/393 (2%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           + D    +S    +  L  +  S                  E       ++   V     
Sbjct: 180 TGDLATQSSILRSVDSLTAAASSTFAADPASAATLLNSLYVEGSATPMFSNGDVVSFAPR 239

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
           +  + ++ +   +    S   ++                     D    +++    I  I
Sbjct: 240 EGGRLLDPQTLTVDATTSLSDLMTLMGDTLGIVSGGDVPQEGGVD-PQVRLNAAGQIEVI 298

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                   V  + G  +               +     +N        V  +        
Sbjct: 299 GNRGEVNDVSITLGDMIVNNSV-TGATTVDLPFNKAQSANGESSITDFVVFDSLGQEVNV 357

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN-------VPGLFIADGI 323
           K+   ++ RD+    F+  L+ +      +         + E               +  
Sbjct: 358 KMTTYMEGRDASSTTFRYILESVDDSDSDTIVGTGTFTFDGEGVITNGAVQQFSIDRNNT 417

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
             +           +       +  +        S     +   +     +   + +   
Sbjct: 418 AAVSPMQISIDFSKLTGISTASAGSAITLQHQDGSNPGTLSRFVIDESGVINGIFDNGII 477

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +A  +    LLE       + E   S +  L          I          +
Sbjct: 478 RTLGQVVLARFSNPQGLLE--AGGTNFQEGVSSGTPFLVTPGNFGAGTIRAGAIELSNTD 535

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           +   L  LI    +Y  + ++I    +++  LL
Sbjct: 536 IGRNLVDLIVASTNYRGNARVIDSVQQLVDELL 568


>gi|296274021|ref|YP_003656652.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098195|gb|ADG94145.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299]
          Length = 783

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/400 (7%), Positives = 88/400 (22%), Gaps = 12/400 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++       +  +   +   +   NI N +   Y               +          
Sbjct: 1   MIGALWTGISGLSAQQKALDNESHNIANVNTIGYKASRISFADQMYQDKIGKGAKVQDAE 60

Query: 62  --MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                    +   A         F A+          + +        R       ++  
Sbjct: 61  KIYTPSGTKSTGVAYDMALKDHGFFAVSNK--TSTGTSETYYTRAGNFRMGDNGTLQDAG 118

Query: 120 EDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF---LSELTVVN 174
            + +    +    A+++V                   +I    + +  +   +++   VN
Sbjct: 119 GNEVQGWAMSPITADDIVSTNANVNVFTNDYSNLIATDIIKHGTYIESYSAKMTDFDQVN 178

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                   S +       + + + + +       +    +       +            
Sbjct: 179 KGDDVSVYSGYGIKSKASKENDVKELVKNYKDALSNYNKSPGASSQEAVAQVSQINFLGT 238

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSS--NQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
              ++ +  TV  + +PI ++  V ++  +         I+A        +    ++   
Sbjct: 239 EITKEKSKLTVYIDGSPISVEYQVRAARKSDDGTTDLTSIEASQIATYKALADEISKHTG 298

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                I   +        S            K   +K        I      +       
Sbjct: 299 YRAYTITDENIDGKTETGSAIDSFESFDTFTKSTKDKDVLRGMIQIEGMIPGKEFKVTDP 358

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
              S S   ++   N      +              D +A
Sbjct: 359 SEDSGSGSPVFGSVNGTTSRTVAKEGIGLGGLVSARDALA 398



 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 99/360 (27%), Gaps = 3/360 (0%)

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
               K +            +    V  I ++        + N  ++ + L +  + +   
Sbjct: 427 SAYDKDLGKTINFGSSINVSPTTNVDTIISNLTSGTSPAVENFNKYFTALNINGNLVIEA 486

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                +    L          +     +   +N       TS    + +    +      
Sbjct: 487 KEYDIEFSSELFADSQTYVASASGSSYNFSGQNAILANSQTSYTIEIPQITLSNGQTIPA 546

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            + +  + ++P  +D      N   A  K    A  ++      I  N +        G+
Sbjct: 547 ITASGGTINSPADLDIFKGKLNDIFANQKTTGGAPAKMPYKADIINGNLVITRVTGASGA 606

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            +   P +     + G    + +            E      Q  +  S      +++  
Sbjct: 607 PAANFPASLTINKIAGGIDKNAVASGRKGAGGEFLEIKTTLDQTSAQNSLQLRLDTLNIS 666

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                        LI    D          VA  N    LL    N +       S    
Sbjct: 667 DSPFGDFSVDKTGLITMQQDGAKFIIGQVSVALFNNERGLLAVGDNLLKK--TTESGEPT 724

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++ +    + I+       G NL E L  L+  ++++  + K I   D +L TL++  +
Sbjct: 725 YNINND-RTSEIAGGNLELSGANLSESLVNLMVFQRAFEANAKSITTADALLTTLIQLKR 783


>gi|229825258|ref|ZP_04451327.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC
           49176]
 gi|229790630|gb|EEP26744.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC
           49176]
          Length = 274

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               ++     +         +   NF    +   N    L     +   + E   S   
Sbjct: 155 DISIDLSGNVLHRVDDKEAGTTKYDNFGKIALYQFNNPAGLNRSGGSL--YYETPASGEA 212

Query: 420 DLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   +    I   Y     V+  +E+  +I  +++Y +++K I  +D+ML+     
Sbjct: 213 RSEDTDAGLNKSLIKSGYLEGSNVSAADEMVNMIVTQRAYQLNSKAITASDEMLEQANNL 272

Query: 479 VK 480
            +
Sbjct: 273 RR 274



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 6/44 (13%), Positives = 12/44 (27%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A +          +I  NI N +   +  +       
Sbjct: 1  MLRSLWSAASGMMAQQVNLDTISNNIANINTTGFKTQSMEFKSL 44


>gi|296274032|ref|YP_003656663.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM
           7299]
 gi|296098206|gb|ADG94156.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM
           7299]
          Length = 263

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 60/247 (24%), Gaps = 6/247 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +    +  ++      +     D           +           R+       +
Sbjct: 11  GMYAQQHQIDVTSNNISNVNTAGFKKDRAEFEDLMYQRLNYTGGSTSQDTRNPTGIDVGS 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ---YR 345
            +            + +P   + +          +   + +     +    VN       
Sbjct: 71  GVRISGIQKSFEEGDLEPTGNDLDIAIEGKGFFRVTLPNGETAYTRNGQFKVNSDGSIVN 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            N   L     +         +  G     +       +      ++       L     
Sbjct: 131 GNGYLLDPEIVIPDNLTKINISNDGLITATDP-TTQEEQEVGQITLSDFVNPAGLAPMGE 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +   +     S        ++  F ++ + +     V L  E+  LI  +++Y  ++K I
Sbjct: 190 SL--FRATTASGDPIDANPTEEQFGNLRQGFVEMSNVKLVSEMVDLITAQRAYEANSKAI 247

Query: 466 MFTDKML 472
              DK+L
Sbjct: 248 QTADKLL 254



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 63/242 (26%), Gaps = 28/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +       Q      NI N +   + +                        
Sbjct: 1   MIKGMYTAASGMYAQQHQIDVTSNNISNVNTAGFKKDRAEFEDLMYQRLNYTGGSTSQDT 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + V +    +    +  +  L    + +      + F  +            +  
Sbjct: 61  RNPTGIDVGSGVRISGIQKSFEEGDLEPTGNDLDIAIEGKGFFRV------TLPNGETAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAE-EVVQNFNTSAREVQKIRADADKEIELEI 160
               + + + +    N +  +L   ++       +   N             ++E+    
Sbjct: 115 TRNGQFKVNSDGSIVNGNGYLLDPEIVIPDNLTKINISNDGLITATDPTTQEEQEVGQIT 174

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
            +     + L  + +++   T +  D  D     +         + +S +   +  + + 
Sbjct: 175 LSDFVNPAGLAPMGESLFRATTASGDPIDANPTEEQFGNLRQGFVEMSNVKLVSEMVDLI 234

Query: 221 TS 222
           T+
Sbjct: 235 TA 236


>gi|225619854|ref|YP_002721111.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae
           WA1]
 gi|225214673|gb|ACN83407.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae
           WA1]
          Length = 264

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E   S            F  I + +     V + +E+  +I  +++Y +++K +  +D
Sbjct: 194 YKETIASGPAFEGEPGANGFPRIHQGFVEMSNVKVVDEMVDMIVAQRAYEMNSKAVQTSD 253

Query: 470 KMLQTLLEGVK 480
            +L T++   +
Sbjct: 254 NLLATVVNLKR 264



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/177 (7%), Positives = 40/177 (22%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +  N    +  +I  N+ N +   Y +                        
Sbjct: 1   MVRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  +   V     +          L A  + +      + F  +           +
Sbjct: 61  VTPVGLQTGLGVKSAATQKMFDQ---GSLQATGNKLDLALEGEGFFQVL------MPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +          +   L   ++     +V+  + S   +  ++   + +
Sbjct: 112 VSYTRDGSFKIDANGQLVTSNGYRLVPEIVFPENFLVEQISISREGIVSVKIGDEND 168


>gi|162147478|ref|YP_001601939.1| flagellar basal body rod protein FlgG [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545587|ref|YP_002277816.1| flagellar basal body rod protein FlgG [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786055|emb|CAP55637.1| putative flagellar basal-body rod protein flgG [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533264|gb|ACI53201.1| flagellar basal-body rod protein FlgG [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 2/177 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E+   A +       +    +   +    +  + ++  +    +   +            
Sbjct: 88  EQTSNALDMAIQGPGYFQVTLPSGEYAYTRDGTFSLSEDGTIVTADGYPLSPNITLPNNA 147

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            N+               +  +      +        L    +N         S    L 
Sbjct: 148 ENITVDQSGQVQYTISGQTQAQVAGQIQLGIFQNENGLAAMGQNLFTQ--TTSSGDAILG 205

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 +  I + +     VN+  E++ LI  +++Y +++K+I  +D+MLQTL    
Sbjct: 206 TPQAQGYGLIQQGFIEESSVNVVTEITDLITAQRAYEMNSKVITASDEMLQTLTNLK 262



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/262 (8%), Positives = 56/262 (21%), Gaps = 29/262 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++   + A       +    +I  NI N     Y RR                       
Sbjct: 1   MMPSLDIAATGMQAQTTNVDTISNNIANMTTTGYKRRRAEFQDLIYQDVRRVGTMSSDTG 60

Query: 47  ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY- 96
                       V        N+      L   S+A+        +  +        +  
Sbjct: 61  DLVPAGAQIGLGVRTAGIYRINEQ---GTLEQTSNALDMAIQGPGYFQVTLPSGEYAYTR 117

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           + + +        + + Y  + +  +         ++  Q   T + + Q   A   +  
Sbjct: 118 DGTFSLSEDGTIVTADGYPLSPNITLPNNAENITVDQSGQVQYTISGQTQAQVAGQIQLG 177

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             +  N    + +                              + S +  ++ I      
Sbjct: 178 IFQNENGLAAMGQNLFTQTTSSGDAILGTPQAQGYGLIQQGFIEESSVNVVTEITDLITA 237

Query: 217 MVVYTSDGTTLFETVPRDINFE 238
              Y  +   +  +        
Sbjct: 238 QRAYEMNSKVITASDEMLQTLT 259


>gi|254182892|ref|ZP_04889485.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1655]
 gi|254299684|ref|ZP_04967133.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           406e]
 gi|157809479|gb|EDO86649.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           406e]
 gi|184213426|gb|EDU10469.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1655]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +    + +   +   FI   + + +    +    +I       +      
Sbjct: 77  TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   ++               S         +A       LL    N   ++E
Sbjct: 137 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +       VF  I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254

Query: 473 QTLLEGVK 480
           Q L +  +
Sbjct: 255 QQLSQAAR 262



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 33/143 (23%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +      ++        +  ++  N+ N +   + R   +                    
Sbjct: 1   MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + + +            D  +     ++    + + F  +            +  
Sbjct: 61  ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
               +L  + E    N     L 
Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137


>gi|319405401|emb|CBI79020.1| Flagellar basal-body rod protein flgG [Bartonella sp. AR 15-3]
          Length = 264

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 2/168 (1%)

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
           +   A +       +      + +    +  +  +    Q  +    L            
Sbjct: 90  QTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIITLDGNLVQPVVTIPIGSK 149

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           N+   +          D          +      V L     N   + E   S +     
Sbjct: 150 NITVSSDGTIYYQTDTDPNAVEAGRLRLVNFVNEVGLEPIGDNL--FRETQASGAPVPGD 207

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +  +  I ++   T  V+  +E++ LI  ++SY +++K+I  +D+M
Sbjct: 208 PKEDGYGSIMQAMLETSNVDPVKEMTELIAAQRSYEMNSKVIQASDEM 255



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/255 (7%), Positives = 47/255 (18%), Gaps = 41/255 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  N+ N +   + R                           
Sbjct: 5   SLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQAII 64

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ N            +A+        +  +++         N  
Sbjct: 65  PEGAMIGMGVRTAAVRTVN---TQGAFVQTGNALDLAINGNGWFEIQD------PNGNVF 115

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    S       L  +    +    I +    V +  T   +        +    
Sbjct: 116 YTRSGAFNLSETGQIITLDGNLVQPVVTIPIGSKNITVSSDGTIYYQTDTDPNAVEAGRL 175

Query: 158 LEISNLRRFLSELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             ++ +     E    N                  D        + + S +  +  +   
Sbjct: 176 RLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKEDGYGSIMQAMLETSNVDPVKEMTEL 235

Query: 214 NNDMVVYTSDGTTLF 228
                 Y  +   + 
Sbjct: 236 IAAQRSYEMNSKVIQ 250


>gi|332298514|ref|YP_004440436.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM
           12168]
 gi|332181617|gb|AEE17305.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM
           12168]
          Length = 264

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 5/215 (2%)

Query: 271 KIKALLQIRDSVVP-----IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
           K+       D+V P         ++    R++     +   +  +   V   F      D
Sbjct: 50  KLAGTPATEDTVTPVGIQMGTGVKVGATQRIITQGSLQNTGVDTDMAVVGEGFFRVQQYD 109

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                 +  S  + +N Q  ++         +  +              +       +  
Sbjct: 110 GSFAYTRDGSFKVDMNGQLVTSEGLRVMPEIILPEGYNLSTLTVSDDGRVTVKIAGNDDP 169

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                +        +   A  S  +   N S +                 +     V++ 
Sbjct: 170 LTVGQLELYRFPNAVGLEATGSNLFKVTNASGAAIAGRPGFDGMGVTKHKFLEMSNVSVV 229

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E+  +I  +++Y  S+K I  +D ML + +   +
Sbjct: 230 NEMVQMIVAQRAYEFSSKAIQTSDTMLSSAVNLKR 264



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/177 (6%), Positives = 37/177 (20%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N       +I  N+ N +   Y ++                       
Sbjct: 1   MVRSLWTAATGMNGQQANIDAISNNLSNVNTTGYKQQRVEFEDLIYQNLKLAGTPATEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +     +    L           + + F  +++      +  +
Sbjct: 61  VTPVGIQMGTGVKVGATQRI---ITQGSLQNTGVDTDMAVVGEGFFRVQQ------YDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    +  +           +   +I      +     S      ++   + +
Sbjct: 112 FAYTRDGSFKVDMNGQLVTSEGLRVMPEIILPEGYNLSTLTVSDDGRVTVKIAGNDD 168


>gi|330946986|gb|EGH47794.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 80

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%)

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
                W E   S              +I+        V+L  EL  LIK + +Y  + K 
Sbjct: 6   AGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKT 65

Query: 465 IMFTDKMLQTLLEG 478
           I     ++QT ++ 
Sbjct: 66  ISTQSTIMQTTIQM 79


>gi|332296516|ref|YP_004438439.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense
           DSM 14796]
 gi|332179619|gb|AEE15308.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense
           DSM 14796]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 44/184 (23%), Gaps = 3/184 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-NPSFLRDGGS 356
           I +           +          +   D       +    ++       P       S
Sbjct: 79  IFTEGPLQQTGNQLDLAIQGDGFFQVTLPDGSTAYTRAGNFSLDSAGEIVTPEGYLLQPS 138

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           +         ++     +     D   ++     +A       L     N   +     S
Sbjct: 139 IVVPTNAVSISVGKDGSVSAKMQDGTVQDLGTIQLARFINPSGLTSLGSNL--YQSTPAS 196

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               L          + +       V + EE+  LI  E++Y    K +   D+ML    
Sbjct: 197 GDAILGTPGTQGIGWVEQGMLEMSNVQVVEEMVNLITAERAYESCAKGMTVCDQMLSDAN 256

Query: 477 EGVK 480
              +
Sbjct: 257 NVKQ 260



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/203 (7%), Positives = 44/203 (21%), Gaps = 27/203 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
               A +   + +     I  N+ N +   +                            P
Sbjct: 3   ALWTAASGMISQTTNVDVITNNLANVNTTGFKTARAEFEDLMYQEVRPAGATSASGNMLP 62

Query: 48  ENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             + +          +   +  L    + +        F  +           ++     
Sbjct: 63  TGLEIGLGSRPVATVRIFTEGPLQQTGNQLDLAIQGDGFFQV------TLPDGSTAYTRA 116

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                            +L  +++     V  +         K++    +++        
Sbjct: 117 GNFSLDSAGEIVTPEGYLLQPSIVVPTNAVSISVGKDGSVSAKMQDGTVQDLGTIQLARF 176

Query: 165 RFLSELTVVNDAIKFKTASKHDA 187
              S LT +   +   T +  DA
Sbjct: 177 INPSGLTSLGSNLYQSTPASGDA 199


>gi|167909129|ref|ZP_02496220.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           112]
          Length = 262

 Score = 66.2 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 61/183 (33%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D  N   +  S       Q  ++  +       
Sbjct: 82  TQGSLQQTGNSKDVAINGPGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++   +     +     +         +A       L     N     E   S 
Sbjct: 142 IPQNANSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDAKGENLFA--ETTSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          + + Y  +  VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +
Sbjct: 200 APNVSQPGLNGAGTLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259

Query: 478 GVK 480
             +
Sbjct: 260 MSR 262



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 41/213 (19%), Gaps = 35/213 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDVAINGPGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +        + + +      S   +    T+  NA  +    +      Q    +A +  
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNANSLTIGSDGVVSVTQPGSNNAVQIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
            L+I+             +     T+S      
Sbjct: 172 ALQIATFINPAGLDAKGENLFAETTSSGAPNVS 204


>gi|295678056|ref|YP_003606580.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002]
 gi|295437899|gb|ADG17069.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002]
          Length = 262

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S       Q  ++  +       
Sbjct: 82  TQGNLQQTGNSKDVAINGAGFFQVQMPDGQTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++   +     I     S  +      +A       L     N     E   S 
Sbjct: 142 IPANATSLTIGSDGSVSITVAGSSNTQQLGTMQLATFINPAGLDSKGENLFA--ETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL +
Sbjct: 200 APNVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/177 (6%), Positives = 31/177 (17%), Gaps = 33/177 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  ++           
Sbjct: 61  ELPSGIQLGTGVQQVATERL---YTQGNLQQTGNSKDVAINGAGFFQVQ------MPDGQ 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           +        + + +      S   +   +   A        +       +   ++ +
Sbjct: 112 TAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPANATSLTIGSDGSVSITVAGSSNTQ 168


>gi|291276999|ref|YP_003516771.1| flagellar hook protein FlgE [Helicobacter mustelae 12198]
 gi|290964193|emb|CBG40039.1| Putative flagellar hook protein, FlgE [Helicobacter mustelae 12198]
          Length = 600

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + S L+      K+   +  ++     +  ++ +  +       +A  + +  L +   N
Sbjct: 455 DSSLLKSESDGKKEGRLSGVSIDENGIIQLNFDNGVSTPMGRIGIAAFSNDQGLHKVGGN 514

Query: 407 SIGWLEKNR--------SDSHDLHMKSQV----VFNHISESYSNTVGVNLQEELSFLIKV 454
                +           S +  L           F  +   Y  T   ++   L+ LI +
Sbjct: 515 LFELKQTTDNNGDNKILSGAPILGWDGDGDGRLKFGRVMHKYLETSNTDVTSALTNLILM 574

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ Y+++ K +   D +++  +   +
Sbjct: 575 QRGYSMNAKALSTGDDLIKEAINLKR 600



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 34/155 (21%), Gaps = 22/155 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE----NVTVVTQRSE 58
           +      + +          SI  NI N +   Y                +V   T  S+
Sbjct: 1   MNNTILNSYSGIKTHQFGLDSISNNIANVNTPGYREHIPEFKTLLSRNIASVNGSTVSSD 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFE------------------ALKEMMSADDHYNNSP 100
           +        +A S+  G  +                        +L       +    + 
Sbjct: 61  SNYGVSVSSNAISTKSGDYKRSDGDFDMAYEGKGWFIVGKNSKGSLSINEDGYEGNQQNY 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
                      + Y  N +   +    +   +  V
Sbjct: 121 FTRDGSFSRDSDGYLVNAAGYYVYGLDLGKIKGNV 155


>gi|302872712|ref|YP_003841348.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575571|gb|ADL43362.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 267

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SAASGEPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SMANNLKR 267



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E V+     S+  + +      K+ E +I +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQEGQIQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193


>gi|203288201|ref|YP_002223216.1| flagellar basal-body rod protein [Borrelia recurrentis A1]
 gi|201085421|gb|ACH94995.1| flagellar basal-body rod protein [Borrelia recurrentis A1]
          Length = 265

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L     N   + E   S      +        + +       V +
Sbjct: 171 ELGQIEIARFVNPAGLNAIGNNI--FKETIGSGEEISGIPGSNGMGKLKQGMLEMSNVAI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       K
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIHTSDNMLGIANNLKK 264



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/170 (5%), Positives = 33/170 (19%), Gaps = 27/170 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTSASGMKAQQYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATEDT 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +        + ++      L   +           F  +               
Sbjct: 61  VTPLGNQVGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVL------LSDGTYGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                 +     +       IL   +    E +  +   S   +  ++ +
Sbjct: 115 TRDGSFKIDANGHLVTNQGYILLPEISFPEEYIKNSIAISQEGIISVKVN 164


>gi|304392506|ref|ZP_07374446.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130]
 gi|303295136|gb|EFL89496.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130]
          Length = 262

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/253 (5%), Positives = 43/253 (16%), Gaps = 29/253 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A        +    I  NI N +   + R     T                     
Sbjct: 3   ALSIAATGMQAQQKNLDVIAHNIANINTTGFKRGRVEFTDLIYDTERLNGIPNRANSANV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS- 99
                    V   + R+ +       +    +          +  ++       +  +  
Sbjct: 63  PEGAHFGLGVRTASVRNVH---LQGQVAQTGNRFDLALTGNGWFQIENAAGETVYQRSGA 119

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                +    + +         +   T           F       ++            
Sbjct: 120 FNTNGAGELVTQDGLRVQPGITVPDNTTDIFINASGAVFARVGGAAEQQEIGQLSLATFA 179

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                  L +          +                   + S +  +  I +       
Sbjct: 180 NDVGLTPLGDNLFAQSDASGEPQVGTPGDPGYATIRQGYLESSNVESVKEITQLIAAQRG 239

Query: 220 YTSDGTTLFETVP 232
           Y  +   +     
Sbjct: 240 YEMNSKVIQAADD 252



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 2/119 (1%)

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
             G        ++   A           +  +      +A    +V L     N      
Sbjct: 137 QPGITVPDNTTDIFINASGAVFARVGGAAEQQEIGQLSLATFANDVGLTPLGDNLFAQ-- 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            + S    +       +  I + Y  +  V   +E++ LI  ++ Y +++K+I   D M
Sbjct: 195 SDASGEPQVGTPGDPGYATIRQGYLESSNVESVKEITQLIAAQRGYEMNSKVIQAADDM 253


>gi|224373466|ref|YP_002607838.1| flagellar basal body and hook protein [Nautilia profundicola AmH]
 gi|223589855|gb|ACM93591.1| flagellar basal body and hook protein [Nautilia profundicola AmH]
          Length = 642

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/317 (8%), Positives = 78/317 (24%), Gaps = 12/317 (3%)

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             + +   +   +              D+  + +   S     +  +   N   ++ ++ 
Sbjct: 336 STIQDFDNIIQNLANSAYPDATNVYLDDEGRISIDNNSFKTINAYTLNTENSNDLFMNNL 395

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L   +    + +  +  T T       I+             K             V 
Sbjct: 396 GRLGNEIYAGTSAKSYDFLTNTQSFGGKIIEANGQKDTISVTFTK-----------QKVL 444

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             Q   +    +L    +E               +    +   +            +   
Sbjct: 445 NNQIVWNGEVSILDPDSNEISTQNFEMTFDSDGHLLSPTQITISSPQNITLNFNMTSYAK 504

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +      +  ++       +     +   + +         PV     +  L    
Sbjct: 505 TDLATSYSFTQNGVEEGFLKNYQIDQNGQIQALFSNGQMSVLGQIPVYHFQNDQGLESLG 564

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            N       +             +    I  +      V+  + ++ LI  +++Y+ + K
Sbjct: 565 GNLFRETANSNKAILYTDQNGNYISGSSIISNTLEASNVDFSQAMTELIVTQKAYSSAAK 624

Query: 464 LIMFTDKMLQTLLEGVK 480
            +  +D+M+Q  ++  K
Sbjct: 625 TVTTSDQMIQRAIDMKK 641



 Score = 63.5 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/418 (11%), Positives = 103/418 (24%), Gaps = 23/418 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F        +          NI N +   Y  +    +      T+ +    +   
Sbjct: 1   MTTSFYNGITGLKSFQYGIDIWGDNIANINTTGYKEQIPEFSTLFS-ETLNSDPVYSDIG 59

Query: 63  FDKVLHAHSSAIGQQRLLQ-----SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               L + +  + Q  L+            E   A   YN++            + Y  +
Sbjct: 60  MGSKLSSTAINLDQGSLINTDNPFDVSINGEGWLAVKRYNDTYYTRTGSFTRDAQGYLVD 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
            + D L     +N  +      +  R +      +       IS     +       +A 
Sbjct: 120 DNGDYLLVANANNLIQNADGSYSVNRSINTDNLISQNTQMSPISLPNNVILPAIATTEAT 179

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  D                 I         ++   +Y+ DG  L       + F
Sbjct: 180 LTSNLNDSDV----------------ITTTKPSTTESDFSALYSKDGADLKVRDGDSLVF 223

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQL-DEMARV 296
              N  T  +      +      ++   AV    +  +    D      + ++   +   
Sbjct: 224 GFGNPATYQNNIISTELCITDDEADGKDAVYNFTLNGINFNIDMPDGSTKEEIQHALKDA 283

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
              +    +      +      I    ++           T    PQ     S ++D  +
Sbjct: 284 FDQAGIINEITDNGIKISDPNHIILTSENELLPNIAAAKLTYRSEPQNSYEFSTIQDFDN 343

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           + +    +    A    L +    S + N      A         +   N++G L   
Sbjct: 344 IIQNLANSAYPDATNVYLDDEGRISIDNNSFKTINAYTLNTENSNDLFMNNLGRLGNE 401


>gi|319781681|ref|YP_004141157.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167569|gb|ADV11107.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 262

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 38/181 (20%), Gaps = 28/181 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51
               A    N        I  NI N +   Y R     +     V               
Sbjct: 3   ALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNASLV 62

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   +         L +  ++       + +  ++           +    
Sbjct: 63  PEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDLALTGRGWFQIE------GADGGTLYSR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              L  +       +    +   +    + V    N + +   +I    D +   ++   
Sbjct: 117 AGALNTNATGQLVTVDGAAVIPAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQIA 176

Query: 164 R 164
            
Sbjct: 177 N 177



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +N     +A       L     N   + E   S   ++ +     F  I + Y     V+
Sbjct: 168 QNLGQLQIANFANEAGLAPLGDNL--FQETTASGPANVGVPGDPGFATIQQGYLEASNVD 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +E++ LI  +++Y +++K+I   D M
Sbjct: 226 PVKEITELISAQRAYEMNSKVIQAADDM 253


>gi|187926952|ref|YP_001893297.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J]
 gi|241665281|ref|YP_002983640.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D]
 gi|187728706|gb|ACD29870.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J]
 gi|240867308|gb|ACS64968.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D]
          Length = 260

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 4/178 (2%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +          ++          ++  D  L      +  VN Q +   S          
Sbjct: 82  TQGNLQQTGNATDVAINGNGFFQVQMPDGTLAYTRDGSFQVNAQGQLVTSSGYPIQPAIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDS--FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                     G   ++         N       +A       L     N     E   S 
Sbjct: 142 VPQNATSFSVGKDGVVTVTTPGSVNNTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +L          ++++Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML+ L
Sbjct: 200 TANLANPGSNGVGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKSVQTSDQMLEKL 257



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/258 (8%), Positives = 56/258 (21%), Gaps = 35/258 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     ++   +    Q   I  N+ N +   + R   +                    
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 47  --------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +V     +       L    +A         F  ++           
Sbjct: 61  TLPSGMQIGTGVRIVATERLH---TQGNLQQTGNATDVAINGNGFFQVQ------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                    + + +      S   +    TV  NA       +           +  +  
Sbjct: 112 LAYTRDGSFQVNAQGQLVTSSGYPIQPAITVPQNATSFSVGKDGVVTVTTPGSVNNTQVG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
             +++N        ++  +      AS            V +   + +   +  V     
Sbjct: 172 TFQLANFINPAGLRSMGENLYAETEASGTANLANPGSNGVGVLNQNYVETSNVNVVEEMV 231

Query: 217 MVVYTSDGTTLFETVPRD 234
            ++ T     +     + 
Sbjct: 232 NMIQTQRAYEINSKSVQT 249


>gi|149911700|ref|ZP_01900308.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36]
 gi|149805230|gb|EDM65247.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36]
          Length = 262

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 74/257 (28%), Gaps = 3/257 (1%)

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           M        T  E    +I+    N    ++               Q    P G+     
Sbjct: 1   MNPALWISKTGLEAQQANISTISNNLANASTVGFKKERAIFEDLLYQAINQPGGQSSQNT 60

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++   ++     ++    +            + +       F    + D      +    
Sbjct: 61  KLPSGLMVGSGARVVATQKDHSQGNMLTTDNSLDLMVSGRGFFEIEMPDGTTSYTRNGQF 120

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395
           T+       +  S       +          ++   ++       + N+      ++   
Sbjct: 121 TLNDEGIIVTPGSGYPLQPQIQIPADAQTITVSEDGEVSVSLPGQTNNQTVGQINISDFV 180

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L    +N   +++   S      + S      + +    T  VN+ EEL  LI+ +
Sbjct: 181 NPGGLQPIGQNM--YIQTGASGDPVQGLPSNEGLGKLVQGAIETSNVNVTEELVNLIESQ 238

Query: 456 QSYNISNKLIMFTDKML 472
           + Y +++K+I   D+ML
Sbjct: 239 RVYEMNSKVISAVDEML 255



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/203 (5%), Positives = 44/203 (21%), Gaps = 25/203 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++          ++I  N+ NA    + +   +                    
Sbjct: 1   MNPALWISKTGLEAQQANISTISNNLANASTVGFKKERAIFEDLLYQAINQPGGQSSQNT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + V +       +  +  H+  + +     L    + +     +     +     
Sbjct: 61  KLPSGLMVGSGARV---VATQKDHSQGNMLTTDNSLDLMVSGRGFFEIEMPDGTTSYTRN 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT----SAREVQKIRADADKEIELEI 160
            +   + E            +  I    +      +     +  +     +         
Sbjct: 118 GQFTLNDEGIIVTPGSGYPLQPQIQIPADAQTITVSEDGEVSVSLPGQTNNQTVGQINIS 177

Query: 161 SNLRRFLSELTVVNDAIKFKTAS 183
             +     +    N  I+   + 
Sbjct: 178 DFVNPGGLQPIGQNMYIQTGASG 200


>gi|91976146|ref|YP_568805.1| hypothetical protein RPD_1667 [Rhodopseudomonas palustris BisB5]
 gi|91682602|gb|ABE38904.1| protein of unknown function DUF1078-like [Rhodopseudomonas
           palustris BisB5]
          Length = 610

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/466 (11%), Positives = 106/466 (22%), Gaps = 25/466 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53
           M +      +       S    +I  NI N+    + R DT           + +    V
Sbjct: 1   MGIFGALTTSVAGLRANSYALENISGNIANSQTTAFKRVDTAFLDLIPQAGTNAQVAGSV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY----NNSPTHYISKLRD 109
           T  S   N     + + S +       + F A+++  S  D+       +          
Sbjct: 61  TSESRLTNTLSGSVQSASVSTYMAINGEGFFAVQKPGSFSDNSPVFTGVNNYTRRGDFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID          ++   ++        +   +IS      S 
Sbjct: 121 DKNGYLVNGAGYYLQGVAIDP--TTGNPVGSTPTVLKFQNDFLPSQATTKISYRANLASY 178

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                +      +      DF     V           + +    N          TL +
Sbjct: 179 PLTTKNDKSVPGSELLRPADFTSNPQVAGTAPPPFADNTKVGLQKNSKAGTAITAATLLK 238

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                 +     + T T            ++     A             D       N 
Sbjct: 239 GAAATNSASADFTITDTITVGTGG-SAKTIAFYDSGAGGSAGAAPNTTYLDLATATVGNL 297

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L  +        +      G      G+     +             +     +      
Sbjct: 298 LGAIDTANGNGGTPSSVATGAITLHTGIAADLTLTSTSAGFASLGLTSPVSVARLGGGSV 357

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK----NFIFDPVAGINTNVTLLEYAR 405
                     +   +     G     +      N       I     G+  N T   + +
Sbjct: 358 GTGQVTGAENQTFLDESISGGATTAYDGSGAPVNVQFRWAKIDSAALGVGHNDTWNLFYQ 417

Query: 406 -------NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                  + + W   N + S +   +   V   ++ S     GV+L
Sbjct: 418 VNPGATGSQVAWQNVNTNFSFNSTGQMNPVIGQLALSNLTVSGVSL 463



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/398 (11%), Positives = 102/398 (25%), Gaps = 13/398 (3%)

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
            +  +     + T        +  + +          TV          F  S       
Sbjct: 220 GLQKNSKAGTAITAATLLKGAAATNSASADFTITDTITVGTGGSAKTIAFYDSGAGGSAG 279

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            A     ++L  + +   L  +   N      ++    A          L   S   G +
Sbjct: 280 AAPNTTYLDLATATVGNLLGAIDTANGNGGTPSSVATGAITLHTGIAADLTLTSTSAGFA 339

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           ++   +   V     G+     V    N   ++       +      G  V+     A  
Sbjct: 340 SLGLTSPVSVARLGGGSVGTGQVTGAENQTFLDESISGGATTAYDGSGAPVNVQFRWAKI 399

Query: 269 K------GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                  G                 +Q+         SF+    +      +    +   
Sbjct: 400 DSAALGVGHNDTWNLFYQVNPGATGSQVAWQNVNTNFSFNSTGQMNPVIGQLALSNLTVS 459

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
              L N      +  +        N    +              +++    ++  Y +  
Sbjct: 460 GVSLGNVTMSFGTGGLTQFSDTNGNVQVNQLQQDGYAAGQLTSVSVSNEGRVVGAYSNGR 519

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N +     VA  N    L                 +++           IS S   +   
Sbjct: 520 NIDLAEVSVATFNGANFLKRI-------DGGAFEVTNESGEALYGKGGSISGSSLESSNT 572

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ +E + LI  +Q+Y+ + K+I   + M+Q LL  ++
Sbjct: 573 DIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNVMR 610


>gi|90418392|ref|ZP_01226304.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1]
 gi|90338064|gb|EAS51715.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1]
          Length = 262

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 56/199 (28%), Gaps = 2/199 (1%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                + +        +L  +  + I     +     +       +        +    +
Sbjct: 57  GGQGVVPEGAQLGLGTRLAAIRNLHIQGTLNQTGNKLDLALNGEGWFQVQGPGGEILYTR 116

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             +     + Q  +    L D           V               +  +      +A
Sbjct: 117 DGAFNTNGDGQLVTLDGLLVDPAITMPANTSEVIVNESGQVFARVGGAADLEELGQLTLA 176

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
               N  L     N   + E   S +    +     +  + + Y     V+  +E+S LI
Sbjct: 177 TFANNAGLAAQGGNL--FRETIASGAPTAGVPGDEGYATLQQGYLEDSNVDPVKEISELI 234

Query: 453 KVEQSYNISNKLIMFTDKM 471
             +++Y +++K+I   D+M
Sbjct: 235 SAQRAYEMNSKVISAADEM 253



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 37/172 (21%), Gaps = 28/172 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------SPENVT 51
               A    N        I  NI N +   + R     T                 + V 
Sbjct: 3   ALAIAATGMNAQQTNVEVIANNIANINTTGFKRARAEFTDLLYQVERAQGVAARGGQGVV 62

Query: 52  VVTQR--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
               +        +         L+   + +      + +  ++                
Sbjct: 63  PEGAQLGLGTRLAAIRNLHIQGTLNQTGNKLDLALNGEGWFQVQ------GPGGEILYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 + +     L   ++   +   A       N S +   ++   AD E
Sbjct: 117 DGAFNTNGDGQLVTLDGLLVDPAITMPANTSEVIVNESGQVFARVGGAADLE 168


>gi|42522134|ref|NP_967514.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus
           HD100]
 gi|39574665|emb|CAE78507.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus
           HD100]
          Length = 261

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 35/183 (19%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L   N A             I  NI N     + R                        
Sbjct: 1   MLKSLNTAATGMAAQQTNMDVIANNIANVSTAGFKRSRAEFEDLMYQTQKEPGTASGLNA 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  V V          K+          + +  Q     F  +            +  
Sbjct: 61  YSPNGVQVGLGVRTAGVQKDFAGGQAQITKNPLDLQIEGSGFFQVL------TADGETAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +        + + + L   +   A         +         +   +   +I 
Sbjct: 115 TRDGAFKKDPNGRLVDKNGNTLQPEITVPANVSGIEVAPTGEVRVITGLNDVPQTIGQID 174

Query: 162 NLR 164
            + 
Sbjct: 175 VVN 177



 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 56/199 (28%), Gaps = 2/199 (1%)

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           + V      +   + +   G  ++      + +     F      D +    +  +    
Sbjct: 64  NGVQVGLGVRTAGVQKDFAGGQAQITKNPLDLQIEGSGFFQVLTADGETAYTRDGAFKKD 123

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            N +                  +  ++        +    +   +      V        
Sbjct: 124 PNGRLVDKNGNTLQPEITVPANVSGIEVAPTGEVRVITGLNDVPQTIGQIDVVNFVNPAG 183

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L    +N         S              ++++    +  VN+ +E+  +I  +++  
Sbjct: 184 LKAMGKNLFTQ--TPSSGQAIASRPGLNGTGYLAQGQLESSNVNIVDEMVNMITAQRAME 241

Query: 460 ISNKLIMFTDKMLQTLLEG 478
            ++K++  +D+MLQ +   
Sbjct: 242 TNSKVMQASDQMLQAINNL 260


>gi|319898637|ref|YP_004158730.1| flagellar basal-body rod protein flgG (Distal rod protein)
           [Bartonella clarridgeiae 73]
 gi|319402601|emb|CBI76146.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Bartonella clarridgeiae 73]
          Length = 264

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 2/168 (1%)

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
           +   A +       +      + +    +  +  +    Q  +    L            
Sbjct: 90  QTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIITLDGNLVQPVITIPIGSK 149

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           NV              D          +      V L     N   + E   S +     
Sbjct: 150 NVTVSPDGTVYYQTDADPSAVEAGRLRLVNFVNEVGLEPIGDNL--FRETQASGAPVPGD 207

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +  I ++   +  V+  +E++ LI  ++SY +++K+I  +D+M
Sbjct: 208 PKDDGYGSIMQAMLESSNVDPVKEMTELIAAQRSYEMNSKVIQASDEM 255



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/255 (7%), Positives = 47/255 (18%), Gaps = 41/255 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  N+ N +   + R                           
Sbjct: 5   SLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGIPNMLNQAII 64

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ N            +A+        +  +++         N  
Sbjct: 65  PEGAMIGMGVRTAAVRTVN---TQGAFVQTGNALDLAINGNGWFEIQD------PNGNVF 115

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    S       L  +    +    I +    V    T   +     +  +    
Sbjct: 116 YTRSGAFNLSETGQIITLDGNLVQPVITIPIGSKNVTVSPDGTVYYQTDADPSAVEAGRL 175

Query: 158 LEISNLRRFLSELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             ++ +     E    N                  D        + + S +  +  +   
Sbjct: 176 RLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKDDGYGSIMQAMLESSNVDPVKEMTEL 235

Query: 214 NNDMVVYTSDGTTLF 228
                 Y  +   + 
Sbjct: 236 IAAQRSYEMNSKVIQ 250


>gi|218507129|ref|ZP_03505007.1| flagellar basal body rod protein FlgG [Rhizobium etli Brasil 5]
          Length = 217

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 4/169 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          I+  D       +     N Q +       +          +
Sbjct: 42  TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDGYEVLPGITIPTGS 101

Query: 365 VKNLAGYPDLINHYCDSFNKNFI--FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        ++          +     +A       L     N   + E   S    + 
Sbjct: 102 TELTISRSGEVSVKLPGATDTTVLGQLTLADFVNEAGLQPIGDNL--FQETAASGEAVVG 159

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 160 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 208


>gi|56551505|ref|YP_162344.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761149|ref|ZP_04759238.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752888|ref|YP_003225781.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|4378856|gb|AAD19724.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543079|gb|AAV89233.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374768|gb|EER64229.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552251|gb|ACV75197.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 263

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 58/187 (31%), Gaps = 2/187 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q     R            + +       +    + D      +  +  +  + Q  ++ 
Sbjct: 74  QTIATERQETQGSFVNTGNSLDLAVSGVGYFQIQLPDGTIGYTRAGNFQLSQDGQIVTDD 133

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                      +    +         +     + +                L    +N  
Sbjct: 134 GKPLIPNINIPQNAEQITIGEDGTVSVQLQGQTQSNQVGQIQTVRFINPAGLQATGQNL- 192

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            ++E   S    + +  Q    +I +       VN+ +EL  +I+ +++Y +++K++  +
Sbjct: 193 -YIETQSSGQPQIGLPQQDGMGYILQGELEQSNVNIVQELVDMIETQRAYEVNSKMVKAS 251

Query: 469 DKMLQTL 475
           D+MLQ +
Sbjct: 252 DEMLQYI 258



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/198 (7%), Positives = 41/198 (20%), Gaps = 18/198 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM---- 62
              A+   +  + +   I  N+ N +   + R                      +     
Sbjct: 6   LQVARTGLDAQNTRMRIIANNLANVNTTAFKRDRAAFETLAYQAERQPGAQSTNSYYYAT 65

Query: 63  -----------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                        +      S +     L    +                      + S 
Sbjct: 66  GLTLGSGVQTIATERQETQGSFVNTGNSLDLAVSGVGYFQIQLPDGTIGYTRAGNFQLSQ 125

Query: 112 ESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
           +          L        +  +  +    T + ++Q             +  +     
Sbjct: 126 DGQIVTDDGKPLIPNINIPQNAEQITIGEDGTVSVQLQGQTQSNQVGQIQTVRFINPAGL 185

Query: 169 ELTVVNDAIKFKTASKHD 186
           + T  N  I+ +++ +  
Sbjct: 186 QATGQNLYIETQSSGQPQ 203


>gi|89069818|ref|ZP_01157153.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus
           HTCC2516]
 gi|89044619|gb|EAR50735.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus
           HTCC2516]
          Length = 261

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 8/210 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +   D  V     QL    R    S         ++     + I              
Sbjct: 52  GTINASDGTVLPTGVQLGLGVRPTSVSMMLAQGSLSSTGGDLDIAIEGSGYLEVALPDGR 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV-- 391
              T     +   +   +   G      +   ++             ++  + +   +  
Sbjct: 112 PGYTRDGGLKRSGDGLIVTADGFPVAPEITIPRDALSISINPEGEVYAYFSDRVEAQLLG 171

Query: 392 ----AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
               AG +    L     N   ++E   S   ++    Q     + + +     V+  +E
Sbjct: 172 QFDIAGFSNPRGLEAVGSNL--FVETEASGPANVTTPGQDGLGTLRQGFLEDSSVDAVKE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++ LI+ ++ Y +++K+I   D+ML   ++
Sbjct: 230 VTDLIEAQRGYELNSKVISAADQMLGATVQ 259



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/245 (6%), Positives = 46/245 (18%), Gaps = 23/245 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQMMRPGTINASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102
           P  V +         +  +    L +    +        +  +        +  +     
Sbjct: 63  PTGVQLGLGVRPTSVSMMLAQGSLSSTGGDLDIAIEGSGYLEVALPDGRPGYTRDGGLKR 122

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               L  + + +       I    +  +     + +   +  V+                
Sbjct: 123 SGDGLIVTADGFPVAPEITIPRDALSISINPEGEVYAYFSDRVEAQLLGQFDIAGFSNPR 182

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
               +     V               D L        + S +  +  +         Y  
Sbjct: 183 GLEAVGSNLFVETEASGPANVTTPGQDGLGTLRQGFLEDSSVDAVKEVTDLIEAQRGYEL 242

Query: 223 DGTTL 227
           +   +
Sbjct: 243 NSKVI 247


>gi|257095357|ref|YP_003168998.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047881|gb|ACV37069.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 260

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 2/182 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                 ++   A +       F    + D      +  S       Q  +   +      
Sbjct: 81  FTQGSLQQTGNALDMAIDGAGFFQVLLPDGTTAYTRDGSFQKDNQGQIVTANGYPLQPAI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                   V         I     +         VA    N  L     N   +LE   S
Sbjct: 141 TIPAQALTVTVATDGVVSITLPTTTAPVQIGTIQVATFVNNGGLQSVGENL--YLETASS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +   +         + ++Y     VN+ +EL  +I+ +++Y ++ K++  +D+ML  L 
Sbjct: 199 GTATPNTPGTNGSGVVVQNYVEASNVNVAQELVLMIQTQRAYELNAKVVSTSDQMLARLT 258

Query: 477 EG 478
           + 
Sbjct: 259 QL 260



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/211 (6%), Positives = 39/211 (18%), Gaps = 30/211 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A         Q   I  N+ N     + +   +                    
Sbjct: 1   MIRSLWTASTGLTAQQVQIDIIANNLANVSTNGFKQARGIFADLLYQTLRQPGAQSSQTT 60

Query: 57  SENKN---------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                                    L    +A+        F  +            +  
Sbjct: 61  QIPDGLQIGLGVTPVSTGRIFTQGSLQQTGNALDMAIDGAGFFQVL------LPDGTTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT---SAREVQKIRADADKEIEL 158
                 +   +      +   L   +   A+ +     T    +  +    A        
Sbjct: 115 TRDGSFQKDNQGQIVTANGYPLQPAITIPAQALTVTVATDGVVSITLPTTTAPVQIGTIQ 174

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
             + +     +    N  ++  ++     + 
Sbjct: 175 VATFVNNGGLQSVGENLYLETASSGTATPNT 205


>gi|149201611|ref|ZP_01878585.1| Flagellar distal rod protein [Roseovarius sp. TM1035]
 gi|149144659|gb|EDM32688.1| Flagellar distal rod protein [Roseovarius sp. TM1035]
          Length = 262

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L       +  +E   S +  +    +     + +    T  VN+
Sbjct: 170 EVGQLTLAQFANPRGLEPVGETFV--VESTASGAPVVGNPLEDGMGDLVQGALETSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            +EL  +I+ +++Y I+++ I  +D+M+  L  
Sbjct: 228 VQELVEMIEAQRAYEINSRSISASDEMMSYLAN 260



 Score = 63.1 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 32/148 (21%), Gaps = 34/148 (22%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS   V + A+   N    +   I  N+ N +   + R                      
Sbjct: 1   MS-SNVMHVAKTGLNAQQARIQVISNNLANVNTTGFKRDRANFETLLYQTLRPAGAQTSE 59

Query: 44  -------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                  T     V +V+            L    +A+      + F  +          
Sbjct: 60  ATEQTAPTTLGTGVRLVSTEKM---YTQGSLTTTDNALDLAIDGKGFFQVL------MPD 110

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILG 124
                        + +      S  ++ 
Sbjct: 111 GRIGYTRNGTFSQNADGVLTTSSGYVVQ 138


>gi|91204383|emb|CAJ70883.1| strongly similar to flagellar distal rod protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 262

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 2/172 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F      D      +  S  +    +  +                      
Sbjct: 93  LDLAIQGKGFFQIQQSDGSIAYTRDGSFQLNSKGEVVTADGLPLSPSITITNATEISIGT 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
            G   +         +N     +        L    +N   +LE   S S  + +  +  
Sbjct: 153 DGTVYVKGSDPSGTLQNVGQIMLTMFPNPSGLDSLGKNL--YLETMASGSPIVTVAGEQG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              I + +     V    EL  LI  +++Y I+++ I  +D+ML T+    +
Sbjct: 211 TGEIYQGFLENSNVETVTELVSLITAQRAYEINSRAISASDEMLSTINSMAR 262



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 38/172 (22%), Gaps = 24/172 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +L     A            ++  N+ N +   + R                        
Sbjct: 1   MLRALYTAATGMKAQQLFLDNVSNNLSNINTTGFKRSQVNFQDLLYSKRYIAGSESAQGF 60

Query: 47  --PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-- 99
             P  + +         +K             +      + F  +++   +  +  +   
Sbjct: 61  EIPAGIQLGGGVRTISISKVFSQGNHVNTERELDLAIQGKGFFQIQQSDGSIAYTRDGSF 120

Query: 100 -PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                   +       S +++     +  I     V    +  +  +Q +  
Sbjct: 121 QLNSKGEVVTADGLPLSPSITITNATEISIGTDGTVYVKGSDPSGTLQNVGQ 172


>gi|312621332|ref|YP_004022945.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201799|gb|ADQ45126.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 267

 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SAASGDPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SMANNLKR 267



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/200 (9%), Positives = 47/200 (23%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E ++     S+  + +      K+ E ++ +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIILPETAISSITIDETGRITYKDAEGQVQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193


>gi|258514026|ref|YP_003190248.1| hypothetical protein Dtox_0711 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777731|gb|ACV61625.1| protein of unknown function DUF1078 domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           +++    +         +      +        L+        +L+  +S          
Sbjct: 150 SISPSGQVTVINGAGMKEEIANISIYNFINPAGLIAQDNKL--YLQTEQSGEAAEGAPGT 207

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +  + + ++    V+L +E+  LI+ +++Y I+ + I   D M
Sbjct: 208 DGYGSLRQGFTEMSNVDLIQEMVRLIEAQRAYEINARSIKTADDM 252



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 57/234 (24%), Gaps = 38/234 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++       +  N       S   NI N +   Y    T  T                  
Sbjct: 1   MIKTLGIGASALNANQTYIDSAANNIANVNTDEYKAERTRFTDLLYNYYYRGTTYPAPTV 60

Query: 45  ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  S   V +   +   +      +   S+++        F  +            
Sbjct: 61  DEKATESSGNGVRIGEVKKVFEP---GTIKETSNSMDLAIDGAGFIKVI------SPDGE 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                   L+ + +   ++ + + + +  I   E +     + + +V  I     KE   
Sbjct: 112 ELFSRGGVLKVNSDGVIEDAAGN-IIEPEIQLPEGLQNFSISPSGQVTVINGAGMKEEIA 170

Query: 159 EISNLRRF--LSELTVVNDAIKFKTASKHDAHDFL--DQRDVLLQKISEIIGIS 208
            IS          +   N        S   A      D    L Q  +E+  + 
Sbjct: 171 NISIYNFINPAGLIAQDNKLYLQTEQSGEAAEGAPGTDGYGSLRQGFTEMSNVD 224


>gi|92116886|ref|YP_576615.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14]
 gi|91799780|gb|ABE62155.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14]
          Length = 615

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/367 (8%), Positives = 94/367 (25%), Gaps = 11/367 (2%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            + +            ++       +T       +       +   I  +      +   
Sbjct: 260 AAGDTITVNTQTIEFYDSGAGGSAGSTPNTTYLDLATSTVGNLLSSIGTITGQAPTIDAS 319

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
             AI   T + +D                    I+          V  ++  T+F+    
Sbjct: 320 TGAITLHTGTANDLTISSASSGWTSMGFGATTNIARGGGGTPGAGVVIANDQTIFQQE-- 377

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
             +          +    + +      ++  S          +  + +            
Sbjct: 378 --SISGGAVTVYDATGTAVNLQLRWAKTDSASLGAGHADTWNMFYQANPNATGTQAAWIN 435

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
                   +     +    ++    ++ G + L N      +  +        N +    
Sbjct: 436 VGTNFTFGTNGQLSSPVGSSITIPSVSVGTQSLGNLTLNLGTGGLTQYASSGGNATVNAI 495

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             +           +     ++  + +  N +     ++  N    L     +   +   
Sbjct: 496 NQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAKVSLSHFNGTNYLKAL--DGGAYAVT 553

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + S              HI+ S       ++ +E + LI  +Q+Y+ + K+I   + M+Q
Sbjct: 554 DESGPAIAGAA-----GHINGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQ 608

Query: 474 TLLEGVK 480
            LL  ++
Sbjct: 609 DLLNVLR 615



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/459 (7%), Positives = 87/459 (18%), Gaps = 34/459 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTVVT 54
           M +    N +       S    +I  NI NA    Y    T        + +P       
Sbjct: 1   MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQVAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108
             +           + A +           F  ++      D+       +        +
Sbjct: 61  VTAYATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRVDNQPQFSGVTYYTRRGDFQ 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +      N +   L    +D           +   +  +      +     +     L 
Sbjct: 121 VNANGNLVNSAGYYLMGVPVD---------PKTGNPLGNVPQVLQFQNNFVPAQATSTLQ 171

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
               +       ++    A        +     +       +          T+ G+   
Sbjct: 172 YAANLPAVPTTLSSPTATAGTITAAGGLNPSDFTNNFNPLVVGTPAPPRTDNTTSGSPAM 231

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP---------KGKIKALLQIR 279
                 +        + T+ SN +        +   +                       
Sbjct: 232 NQQTPPVAITSATKLSGTAPSNSLPTGFAAGDTITVNTQTIEFYDSGAGGSAGSTPNTTY 291

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             +       L      + G     D   G      G      I    +           
Sbjct: 292 LDLATSTVGNLLSSIGTITGQAPTIDASTGAITLHTGTANDLTISSASSGWTSMGFGATT 351

Query: 340 VNP----QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                          + +  ++ ++   +   +  Y                     G  
Sbjct: 352 NIARGGGGTPGAGVVIANDQTIFQQESISGGAVTVYDATGTAVNLQLRWAKTDSASLGAG 411

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
              T   + + +        +  +     +      +S 
Sbjct: 412 HADTWNMFYQANPNATGTQAAWINVGTNFTFGTNGQLSS 450


>gi|83721615|ref|YP_440803.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           E264]
 gi|167579490|ref|ZP_02372364.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           TXDOH]
 gi|167617587|ref|ZP_02386218.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           Bt4]
 gi|257140546|ref|ZP_05588808.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           E264]
 gi|83655440|gb|ABC39503.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis
           E264]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 54/176 (30%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          +   D         +   N Q +   S               
Sbjct: 87  TQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNA 146

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
                G   +++      N       +            AR    + E   S + ++   
Sbjct: 147 TSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDARGENLFAETTSSGAPNVSQP 206

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  + + Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  +
Sbjct: 207 GLNGAGTLKQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMSR 262



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/260 (8%), Positives = 56/260 (21%), Gaps = 16/260 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+   S              +           +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGSLTQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           + + +      S   +    I   +        S   V   +  ++  +++    +  F+
Sbjct: 121 QTNAQGQLVTSSGYQVI-PAITIPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQIATFI 179

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
           +   +          +       + Q  +      +   +     N    +V        
Sbjct: 180 NPAGLDARGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVQELVNMIQTQRA 239

Query: 228 FETVPRDINFEKMNSYTVTS 247
           +E   + +        TVT 
Sbjct: 240 YEINSKAVTTSDQMLQTVTQ 259


>gi|294339843|emb|CAZ88206.1| putative Flagellar basal body FlaE (FlgE) [Thiomonas sp. 3As]
          Length = 415

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/479 (10%), Positives = 109/479 (22%), Gaps = 70/479 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
           + F  A +    AS     +  NI NA+   +   +     +       T     +    
Sbjct: 2   STFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADTYAAAIAGTSPQYGQVGIG 61

Query: 65  KVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +   +    Q  +  +   L            ++   +      + +     Y  + +
Sbjct: 62  TSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDAA 121

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L  T   +      +                 +I       +   S    +N     
Sbjct: 122 GGQLIGTPAVSGVLTGGSGP--------------LQITTTTLAPKATTSGTLGLNLNASV 167

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                  A    D                             S  +T+++++        
Sbjct: 168 TPIPSGTAFSTSDPT-----------------------SYNYSTTSTVYDSLGTSHLLTT 204

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
             +    S +       V  S +  +A           I+ +            A  L  
Sbjct: 205 YYALPSGSATASGQAWNVYYSVDGTTAAGGITSGGPSTIQFTPTGAISGTATLTASGLTW 264

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +                          D      I+     +  Y +           S 
Sbjct: 265 A--------------------------DGASPSNITLNFAGSTNYNATSVVNSLTTDGSS 298

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +  ++     +   Y +  +       +        L     N   ++    S   
Sbjct: 299 VGQLSNLSIDPSGVVFGRYTNGQSAKLGLITLTNFKAPQGLQRLGNNY--FVPTYASGQP 356

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                       +  S      V+L  +L  LI  +Q+Y  + + I   ++++QTLL  
Sbjct: 357 LTGQPGGGGLGVLQSSAVEQSNVDLSSQLVNLIVAQQAYQANAQTIKTQNQVVQTLLSL 415


>gi|254470407|ref|ZP_05083811.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062]
 gi|211960718|gb|EEA95914.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062]
          Length = 260

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 3/208 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                    +     Q+    R    +          + N   + I         +    
Sbjct: 52  GTETSDAGTIVPNGVQIGSGVRTAATTRIMSPGSVTQTGNEYDVTIRGEGFFQIQRPDGT 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
           I  T   +         +   G   +  +    N       +     + + N     +  
Sbjct: 112 IGYTRDGSFARSQTGQLVTKDGYPVQPGITIPDNARDVTINVQGLVQAMDDNDQVLNLGQ 171

Query: 394 INTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           + T     +    +IG    LE   S    L+      F +I + +  +  V+   ELS 
Sbjct: 172 LETARFTNQAGLEAIGDNLFLETPASGPPQLNNPGTAGFGNILQRHLESSNVDAVTELSS 231

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           LI  +++Y +++K+I   D+M  T    
Sbjct: 232 LISAQRAYEMNSKIIKAADEMYSTTTNL 259



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/147 (6%), Positives = 20/147 (13%), Gaps = 22/147 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
             + A             I  N+ N     Y R+                          
Sbjct: 3   ALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYENQRRMGTETSDAGTIV 62

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
           P  V + +            + +  S              +                   
Sbjct: 63  PNGVQIGSGVRT---AATTRIMSPGSVTQTGNEYDVTIRGEGFFQIQRPDGTIGYTRDGS 119

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEE 133
              S            +   +      
Sbjct: 120 FARSQTGQLVTKDGYPVQPGITIPDNA 146


>gi|255021354|ref|ZP_05293402.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756]
 gi|254969217|gb|EET26731.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756]
          Length = 419

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/474 (9%), Positives = 112/474 (23%), Gaps = 56/474 (11%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
             F+ A +    A+     +  NI NA+   +   +     +     V +  +  +    
Sbjct: 2   GAFSTALSGLQAANTDLQVLGNNISNANTVGFKSSNAEFADAYGAALVGSAPTYGQVGIG 61

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             +   +    Q  +  +   L   ++ +  +  +    I   R+               
Sbjct: 62  TRVMTVAQQFTQGNIQTTNNPLDVAINGNGFFQLNYNGDIVYSRNGQFQL---------- 111

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
               ++   +V         +Q               +      + +          ++ 
Sbjct: 112 ----NSGGVIVDGNGAELLGIQAQNGKLTGATGPLTVSQNALPPQASSGITLALNLNSTN 167

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
            +                           N+      S   T+++++             
Sbjct: 168 QNLSG-------------------AAFNINDPNTYNYSTSNTIYDSLGTPQLVTTYYQLV 208

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                +     G   +                    +               L+ S + +
Sbjct: 209 SGGTGSTTATSGETWNV---------------YYSATGTTGSGGITSGSLGQLVFSSTGQ 253

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
               G     P L   DG +     +    S          S  +     G ++      
Sbjct: 254 LVSGGPFNVNPPLNWQDGAQSSTLNVSYSGSTNYNAPNAVVSATTNGYGVGQLT------ 307

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
             ++    ++   Y +  ++      +     N  L     N         S        
Sbjct: 308 GLSIDPGGNIYARYSNGQSQVLGQIALTRFANNNGLQNLGNNYWA--SSYSSGLPLSGAP 365

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                  +         VNL ++L  LI  +Q+Y  + + I   + ++QTLL  
Sbjct: 366 GSTNLGVLQSGAVEQSNVNLSQDLVNLIVAQQAYQANAQTIKTQNTVVQTLLSL 419


>gi|300693340|ref|YP_003749313.1| flgg: flagellar basal-body rod protein [Ralstonia solanacearum
           PSI07]
 gi|299075377|emb|CBJ34672.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum
           PSI07]
          Length = 260

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + ++      F    + D      +  S  I    Q  ++  +       
Sbjct: 82  TQGNLQQTGNSTDAAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVTSSGYPVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +       +       +A       L     N     E   S 
Sbjct: 142 VPQNATSLTIAKDGVVTVTTPGSVNSTQVGTFQLANFINPAGLRSMGENLYA--ETEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +L          ++++Y  T  VN+ EE+  +I+ +++Y I++K +  +D+ML+ L +
Sbjct: 200 TANLAAPGANGIGVLNQNYVETSNVNVVEEMVNMIQTQRAYEINSKAVQTSDQMLEKLAQ 259

Query: 478 G 478
            
Sbjct: 260 L 260



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 57/242 (23%), Gaps = 29/242 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++   +    Q   I  N+ N +   + R   +                   T
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    ++         F  ++              
Sbjct: 61  TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDAAINGNGFFQVQ------MPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 + + +      S   +    TV  NA  +    +           ++ +    +
Sbjct: 115 TRDGSFQINAQGQLVTSSGYPVQPAITVPQNATSLTIAKDGVVTVTTPGSVNSTQVGTFQ 174

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ++N        ++  +      AS            + +   + +   +  V      ++
Sbjct: 175 LANFINPAGLRSMGENLYAETEASGTANLAAPGANGIGVLNQNYVETSNVNVVEEMVNMI 234

Query: 220 YT 221
            T
Sbjct: 235 QT 236


>gi|221635451|ref|YP_002523327.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM
           5159]
 gi|221158111|gb|ACM07229.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM
           5159]
          Length = 259

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           + S L+    +      +     G    +        +      +        LL   + 
Sbjct: 129 DGSLLQPPLVLPAGAQLDRIAPDG-TVFVRAAGSGDAQPIGRLELVRFPNPQGLLAAGQG 187

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              W+    +   +     +  +  +         V+L ++++ LI  +++Y  + + + 
Sbjct: 188 --RWIATEAAGQPETGAPGEGNWPPVLSGVREHSNVDLVDQMTQLIMAQRAYTANLRSLQ 245

Query: 467 FTDKMLQ 473
             D++++
Sbjct: 246 TIDELIE 252



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/247 (6%), Positives = 47/247 (19%), Gaps = 35/247 (14%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------------PEN 49
           A +       +  +I  N+ N +   +       T                         
Sbjct: 8   AVSGVRAQQVRLDTIAHNLANLETDGFKAARADFTAVPPQEYRVARAGEAPLGPVPIGSG 67

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           V +              +                    E+         +      +L  
Sbjct: 68  VELSATTR---QFTLGPVEVTGDPFDLALAGPDTFVATEL-----PDGTTAFRRSGRLSI 119

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE---ISNLRRF 166
                       +L   ++  A   +           +     D +       +      
Sbjct: 120 DATGRLVFEDGSLLQPPLVLPAGAQLDRIAPDGTVFVRAAGSGDAQPIGRLELVRFPNPQ 179

Query: 167 LSELTVVNDAIKFKTA----SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                     I  + A    +              +++ S +  +  + +       YT+
Sbjct: 180 GLLAAGQGRWIATEAAGQPETGAPGEGNWPPVLSGVREHSNVDLVDQMTQLIMAQRAYTA 239

Query: 223 DGTTLFE 229
           +  +L  
Sbjct: 240 NLRSLQT 246


>gi|315497881|ref|YP_004086685.1| flagellar basal-body rod protein flgg [Asticcacaulis excentricus CB
           48]
 gi|315415893|gb|ADU12534.1| flagellar basal-body rod protein FlgG [Asticcacaulis excentricus CB
           48]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + R+L    + +     +       +    +   +    +  +  +    Q  ++  +L
Sbjct: 76  SVYRILTQGSATRTDNPYDIMVDGRGYFQVLMPSGETAYTRAGNFAVNDQGQLVTDDGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                   +    V         +     +         VA       L     N   +L
Sbjct: 136 VQPQITFPQDTKEVTISKTGQVSVTQDGVTAPTVIGQLQVASFFNEAGLEAIGDNL--YL 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +   S + ++     V +  + + Y+    V+   E++ LI  +++Y +++K+I   D+M
Sbjct: 194 QSGASGAPNIGTPGDVGYGTLMQGYTEASNVDAVSEITSLIVAQRAYEMNSKIIKTADEM 253

Query: 472 L 472
           L
Sbjct: 254 L 254



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 6/163 (3%), Positives = 28/163 (17%), Gaps = 34/163 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +       +I  NI N +   + ++                          
Sbjct: 3   ALRTATTGMSAQQLNVDTISHNIANMNTVGFKKQRAEFQDLLYQNVERMGAQSSESGTVV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +       +         +        + +  +            + 
Sbjct: 63  PTGIQVGGGVKTGSVYRI---LTQGSATRTDNPYDIMVDGRGYFQVL------MPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                    + +         ++   +    +      + + +
Sbjct: 114 YTRAGNFAVNDQGQLVTDDGYLVQPQITFPQDTKEVTISKTGQ 156


>gi|333008282|gb|EGK27756.1| flagellar basal-body rod protein flgG domain protein [Shigella
           flexneri K-272]
 gi|333019772|gb|EGK39044.1| flagellar basal-body rod protein flgG domain protein [Shigella
           flexneri K-227]
          Length = 82

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E   S + +           + + Y  T  VN+ EEL  +I+V+++Y I++K +  TD
Sbjct: 14  YTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTD 73

Query: 470 KMLQTLLEG 478
           +MLQ L + 
Sbjct: 74  QMLQKLTQL 82


>gi|332980934|ref|YP_004462375.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON]
 gi|332698612|gb|AEE95553.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON]
          Length = 264

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/203 (8%), Positives = 53/203 (26%), Gaps = 9/203 (4%)

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
            R    P +  Q                       +  G        +      +G    
Sbjct: 70  ARVVSSPKYFAQGPMQQTERNLDLGIDGTAFFAVTDGQGNVFYTRDGNFKLTETEGEDGR 129

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I       +    L   G+  +     ++             +    +     +      
Sbjct: 130 IHSYITTANGYWLLDTEGARIEIPAGTIEGDISIDPSGAVMVEG--AHIADIALVEFTNP 187

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L     N     +    +              + + +     V++ +E++ +I+ +++
Sbjct: 188 QALETRGDNLYAVTDNVGPNYLTDGDSK------VRQGFLEASNVDIADEMARMIRAQRA 241

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y ++ +++   D+M+  L   ++
Sbjct: 242 YQLNARVLQTADEMIG-LANSIR 263



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 25/125 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           ++     A     +      +I  NI N D   + R        P    +     +    
Sbjct: 1   MIQALWTAGAGLISQQYNVDTIANNIANVDTTAFKRNTAHIEDMPYVYKLNPAIRQADNE 60

Query: 61  -----------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                                  +      +       +F A+ +         N     
Sbjct: 61  GLLPHMGTGARVVSSPKYFAQGPMQQTERNLDLGIDGTAFFAVTD------GQGNVFYTR 114

Query: 104 ISKLR 108
               +
Sbjct: 115 DGNFK 119


>gi|308175373|ref|YP_003922078.1| flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307608237|emb|CBI44608.1| putative flagellar hook-basal body protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555347|gb|AEB25839.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens
           TA208]
          Length = 273

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 2/136 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             NP    +G  +          ++    L                +  +N    L    
Sbjct: 140 GGNPILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRSQTFNLGIVNVNNPQELHAEG 199

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N         S   +L    +     + +       V++ +E++ LI  ++SY ++++ 
Sbjct: 200 DNLFSVNGTGASAIEELTGAKRQEIG-MEQGALENSNVDMSKEMTDLIVSQRSYQLNSRT 258

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D+ML  L+  V+
Sbjct: 259 ITLGDQMLG-LINSVR 273



 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          +L     A    N   QQ  ++  N+ N+D   Y  RD+  +           R +   +
Sbjct: 1  MLRSMLAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSEL--------IRQQYDQI 52

Query: 63 FDK 65
           DK
Sbjct: 53 DDK 55


>gi|330943210|gb|EGH45617.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 133

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +N   L     V +          G   +      +  +       A       L    
Sbjct: 1   TANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMG 60

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N   +LE   S +  +            ++      V+  EEL  +I  +++Y +++K+
Sbjct: 61  GNL--YLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRAYEMNSKV 118

Query: 465 IMFTDKMLQTLLE 477
           I   D+MLQ L +
Sbjct: 119 ISTADQMLQNLTQ 131


>gi|328913715|gb|AEB65311.1| putative flagellar hook-basal body protein [Bacillus
           amyloliquefaciens LL3]
          Length = 274

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 2/136 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             NP    +G  +          ++    L                +  +N    L    
Sbjct: 141 GGNPILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRSQTFNLGIVNVNNPQELHAEG 200

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N         S   +L    +     + +       V++ +E++ LI  ++SY ++++ 
Sbjct: 201 DNLFSVNGTGASAIEELTGAKRQEIG-MEQGALENSNVDMSKEMTDLIVSQRSYQLNSRT 259

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D+ML  L+  V+
Sbjct: 260 ITLGDQMLG-LINSVR 274



 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          +L     A    N   QQ  ++  N+ N+D   Y  RD+  +           R +   +
Sbjct: 2  MLRSMLAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSEL--------IRQQYDQI 53

Query: 63 FDK 65
           DK
Sbjct: 54 DDK 56


>gi|296283228|ref|ZP_06861226.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum
           JL354]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 2/166 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       +    +   +    +  +  +    +  ++   + + G    +   +V   
Sbjct: 93  FDLAIQGLGYFQVQMPTGEIGYTRDGTFQLSDQGELVTSQGLVVEPGITIPQGAVDVAVS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                 I    ++  +      +A       L     N   +L    S    +    +  
Sbjct: 153 RTGEVQIKIAGETEMQTVGQIELATFVNEAGLEAKGDNL--FLATAASGEPTIAAPGEPG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           F  +++ +     VN   E++ LI  +++Y ++++++   D+ML T
Sbjct: 211 FGSVAQGFVEASNVNPVAEITALITAQRAYEMNSRVVKTADEMLGT 256



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/181 (7%), Positives = 33/181 (18%), Gaps = 34/181 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  NI N +   + R+                          
Sbjct: 3   SLSIAGTGMLAQQTNVDVISNNIANMNTTGFKRQRAQFQDLLYQQVSRPGASSAGPEARA 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V         +      L    +          +  ++             
Sbjct: 63  PTGIQIGAGVRTGGVYRIAEQ---GALVQTDNRFDLAIQGLGYFQVQ------MPTGEIG 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  + S +         ++   +      V    + +     KI  + + +   +I
Sbjct: 114 YTRDGTFQLSDQGELVTSQGLVVEPGITIPQGAVDVAVSRTGEVQIKIAGETEMQTVGQI 173

Query: 161 S 161
            
Sbjct: 174 E 174


>gi|289670506|ref|ZP_06491581.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 142

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 27/134 (20%), Gaps = 3/134 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            FN + +  N A+        NI N +   +           ++ +    R+   +    
Sbjct: 2   GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61

Query: 66  VLHAH---SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              A       I             E                   +     Y  N     
Sbjct: 62  SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQGAR 121

Query: 123 LGKTVIDNAEEVVQ 136
           L     + +     
Sbjct: 122 LQVFAPNPSGNGFD 135


>gi|183220929|ref|YP_001838925.1| flagellar basal-body rod protein FlgG [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911025|ref|YP_001962580.1| endoflagellar distal basal body rod protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775701|gb|ABZ94002.1| Endoflagellar distal basal body rod protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779351|gb|ABZ97649.1| Flagellar basal-body rod protein FlgG (Distal rod protein)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 286

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + + Y     V++  E+  +I+V ++Y  ++K +   D +L  L E ++
Sbjct: 237 QVLQGYLEASNVSVVTEMVDMIEVNRAYEANSKTMQTQDSLLGRLFEIMR 286



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 28/149 (18%), Gaps = 26/149 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------S 46
           +L       N   +   +   +  N+ N D   + +  T+                   +
Sbjct: 1   MLRGLYTGANGMISQQVRMDVVANNLANVDKTGFKKDTTVFKTFPEMLLHRYSEDGIGKT 60

Query: 47  PENVT----VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE------MMSADDHY 96
           P        VV +      + +        A+ +   +       +              
Sbjct: 61  PMGSFDTSPVVGKLGFGAEVNEVYTRFEQGAVKKTDNIFDLMVQDQPGMEKPAFFTVLTN 120

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGK 125
                            +        L  
Sbjct: 121 QGERLTRSGSFVLDKNGFVVTPQGFPLLG 149


>gi|330809230|ref|YP_004353692.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377338|gb|AEA68688.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 257

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 27/137 (19%), Gaps = 22/137 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENV--- 50
           ++   + A +          SI  N+ N     Y R                    +   
Sbjct: 1   MIDSLSIASSGLTANQAWIDSISNNVANMQTIGYKRSQVDFHDMVREVGTRDDGGGMTES 60

Query: 51  --TVVTQRSE--NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
             T    ++   ++      +    +A+        F  +                   +
Sbjct: 61  LLTGAGIQASQPSQVFSPGTVRESGNALDLAIQGDGFFEVA------LPTGELAYTRAGR 114

Query: 107 LRDSLESYSKNLSEDIL 123
                E          L
Sbjct: 115 FHLDSEGQLAMPDGQTL 131



 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 32/68 (47%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S         +     + + Y     VNL +E+S L+  +++Y ++ +L+  +D++L
Sbjct: 190 TQASGEAIYAEPGRDGQGVLLQGYVEMSNVNLIDEMSGLVLAQRAYQMNARLLQASDQIL 249

Query: 473 QTLLEGVK 480
           +T+    +
Sbjct: 250 ETINNLRR 257


>gi|300114797|ref|YP_003761372.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii
           C-113]
 gi|299540734|gb|ADJ29051.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii
           C-113]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 2/176 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  +   + +       F    + D      +  +  I  N Q  ++  +    G 
Sbjct: 81  FTQGGLTQTGNSLDMAIQGRGFFQVLMPDGSLAYTRDGTFQIDANGQLVTSSGYPVQPGI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +V   +     +    D          +A       L     N   + E   S
Sbjct: 141 TIPQSALSVTVGSDGIVSVLMPGDGTPVQAGNLQLADFINPAGLQPTGNNL--FKETAAS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                 +        + +       VN+ EEL  +I+ +++Y +++K I  TD+ML
Sbjct: 199 GVAQTGIPGLNGIGTLVQGALEGANVNVVEELVNMIETQRAYEMNSKAISSTDEML 254



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 28/143 (19%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +      A+   +    + A+I  N+ N +   + R   +                    
Sbjct: 1   MNQALWIAKTGLDAQQTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNT 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R+           L    +++      + F  +           +   
Sbjct: 61  LLPSGLMLGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQVL------MPDGSLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 +          S   + 
Sbjct: 115 TRDGTFQIDANGQLVTSSGYPVQ 137


>gi|288958675|ref|YP_003449016.1| flagellar basal-body rod protein [Azospirillum sp. B510]
 gi|288910983|dbj|BAI72472.1| flagellar basal-body rod protein [Azospirillum sp. B510]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 2/193 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            V      ++  +ARVL            +       +    +   D    +  +  +  
Sbjct: 65  GVQVGAGVRVAAVARVLEQGNLNITDNKLDVAINGSGYFQITLPSGDTSYTRAGNFKLSP 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                +   +             ++   +    L+     +  +N     +A       L
Sbjct: 125 QGVIVTADGYTVQPNITIPTNAVDISINSSGEVLVKLDGQTATQNVGQIQLATFANAAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                N   ++E   S            F  +++    T  VN+ +E++ LI  +++Y +
Sbjct: 185 EATGDNL--FMETAASGQPVTGNPGAPGFGRVTQGALETSNVNVVQEITTLITAQRAYEM 242

Query: 461 SNKLIMFTDKMLQ 473
           ++K+I  TD+M+Q
Sbjct: 243 NSKVIKTTDEMMQ 255



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 39/178 (21%), Gaps = 28/178 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
                            +I  NI N+    Y ++                          
Sbjct: 3   SLAIGATGMIAQQLNVETISNNIANSTTTGYKKQRAEFQDLLYQNFRRIGSTSSDAGTVV 62

Query: 47  PENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V       +  + +    L+   + +        +  +           ++    
Sbjct: 63  PTGVQVGAGVRVAAVARVLEQGNLNITDNKLDVAINGSGYFQI------TLPSGDTSYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + S +          +   +      V  + N+S   + K+      +   +I 
Sbjct: 117 AGNFKLSPQGVIVTADGYTVQPNITIPTNAVDISINSSGEVLVKLDGQTATQNVGQIQ 174


>gi|330721008|gb|EGG99169.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC2047]
          Length = 92

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W E   S +  +          +         V+L  EL  LI  +++Y  + + I    
Sbjct: 23  WAETFDSGNPVVGTPGSASLGVLQSGALEESNVDLSAELVSLILAQRNYQANARAIETES 82

Query: 470 KMLQTLLEG 478
            + Q +L+ 
Sbjct: 83  AVTQAILQI 91


>gi|23092317|gb|AAN08642.1| FlgG [Aeromonas hydrophila]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 70/262 (26%), Gaps = 3/262 (1%)

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
           M        T  +    +I     N    ++               Q    P G+  A  
Sbjct: 1   MNPALWISKTGLDAQQTNIAVTSNNLANASTVGFKKSRAIYEDLLYQNINQPGGRSSADT 60

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
           ++   ++     ++    +       +    + +       +    + D      +    
Sbjct: 61  ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY-CDSFNKNFIFDPVAGIN 395
           T+       +  +       +          +     +      D  ++       +   
Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINTSDFV 180

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N   ++E   S +             I +    T  VN+ EEL  LI+  
Sbjct: 181 NASGLQPMGENM--FVETQSSGAPIQGTAGADGLGVIKQGMLETSNVNVTEELVNLIQAH 238

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           + Y +++ ++   D M+  L++
Sbjct: 239 RVYEMNSNVLSAVDGMMSFLIQ 260



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/214 (6%), Positives = 41/214 (19%), Gaps = 17/214 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQ 55
           +      ++   +      A    N+ NA    + +   +           P   +    
Sbjct: 1   MNPALWISKTGLDAQQTNIAVTSNNLANASTVGFKKSRAIYEDLLYQNINQPGGRSSADT 60

Query: 56  R--------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  K +  +  H+  +       L    + +          ++      + 
Sbjct: 61  ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             + E            +  I   E           +V              +  +    
Sbjct: 121 TLNDEGTIVTPGNGYPLQPEIQIPENAQSVTVGEDGQVSVQLKG--DGASQVVGQINTSD 178

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                    +      +  +     Q       +
Sbjct: 179 FVNASGLQPMGENMFVETQSSGAPIQGTAGADGL 212


>gi|310659662|ref|YP_003937383.1| flagellar component of cell-distal portion of basal-body rod
           [Clostridium sticklandii DSM 519]
 gi|308826440|emb|CBH22478.1| flagellar component of cell-distal portion of basal-body rod
           [Clostridium sticklandii]
          Length = 266

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 3/157 (1%)

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
              D      +   +      +       D   +  +      +++    +         
Sbjct: 113 FTRDGNFKFSVDGDVMTLVTSQGYTVLSTDDDVIEVESTMRNFSISEGGMVTAQDEAGEI 172

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                  +        L     N       +     +           + + +  T  V 
Sbjct: 173 VELGEIQIVQFINPEGLQAMGNNFFSLTANSGEPVIEEDESKDT---KLYQGFLETSNVQ 229

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           L +E+  +I  +++Y I++K I   D M+QT+    +
Sbjct: 230 LVDEMVRMIMAQRAYEINSKSIQTADDMMQTVNSLKR 266



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 24/130 (18%), Gaps = 29/130 (22%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A +          +I  N+ N +   + ++ T                        
Sbjct: 3   ALWTAASGMRAQQLNMDTISNNLANVNTTGFKKQKTEFKDLLYTSMKSVSNDPELGEPVN 62

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V  V          +  L    +          F  ++                
Sbjct: 63  LQIGHGVRPVATSRL---FTNGNLEKTENPTDVALEGPGFFVVEN----PTGNPEQLFTR 115

Query: 104 ISKLRDSLES 113
               + S++ 
Sbjct: 116 DGNFKFSVDG 125


>gi|307293785|ref|ZP_07573629.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum
           L-1]
 gi|306879936|gb|EFN11153.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum
           L-1]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 4/178 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +    +      +          ++  D  +    +       +     S        
Sbjct: 81  INAQGTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFTTTAEGVVVTSDGLPLIPQ 140

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       G    ++                +A       L     N +   E   
Sbjct: 141 ITVPEGATSITIGNDGTVSATLQGQTEPTQLGQVELASFMNPGGLQSTGGNLL--KETAA 198

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           S +  + +        +   Y  T  VN+ EEL  +I+ +++Y +++K+I  TD+MLQ
Sbjct: 199 SGTPQVGVAGLDGRGVVRSGYLETSNVNVVEELVDMIETQRAYEVNSKMIKATDEMLQ 256



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/183 (6%), Positives = 35/183 (19%), Gaps = 33/183 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
             A  + A+   +  + +   I  N+ N +   + R                        
Sbjct: 2   TNAALHVARTGLDAQNTKMRVIANNLANVNTTAFKRDRADFETLAYQQIVAAGANSDSEN 61

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +      N       L+   + +        +  +++         +
Sbjct: 62  KFATGLNLGSGVALQGTSKIN---AQGTLNQTGNTLDMAIEGSGYFQVQQ------PDGS 112

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                      + E          L   +                    ++   +     
Sbjct: 113 IAYTRAGNFTTTAEGVVVTSDGLPLIPQITVPEGATSITIGNDGTVSATLQGQTEPTQLG 172

Query: 159 EIS 161
           ++ 
Sbjct: 173 QVE 175


>gi|53717916|ref|YP_106902.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           K96243]
 gi|53724567|ref|YP_104800.1| flagellar basal body rod protein FlgG [Burkholderia mallei ATCC
           23344]
 gi|67641540|ref|ZP_00440317.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8
           horse 4]
 gi|76808723|ref|YP_331881.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           1710b]
 gi|121598854|ref|YP_994293.1| flagellar basal body rod protein FlgG [Burkholderia mallei SAVP1]
 gi|124386502|ref|YP_001028058.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC
           10229]
 gi|126439033|ref|YP_001057324.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           668]
 gi|126450732|ref|YP_001082865.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC
           10247]
 gi|126454438|ref|YP_001064566.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           1106a]
 gi|134283616|ref|ZP_01770315.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           305]
 gi|167001539|ref|ZP_02267334.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20]
 gi|167717662|ref|ZP_02400898.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           DM98]
 gi|167736705|ref|ZP_02409479.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           14]
 gi|167813804|ref|ZP_02445484.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           91]
 gi|167822320|ref|ZP_02453791.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 9]
 gi|167843910|ref|ZP_02469418.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           B7210]
 gi|167892412|ref|ZP_02479814.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           7894]
 gi|167900910|ref|ZP_02488115.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           NCTC 13177]
 gi|167917166|ref|ZP_02504257.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei
           BCC215]
 gi|217425015|ref|ZP_03456511.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           576]
 gi|226199816|ref|ZP_03795367.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810463|ref|YP_002894914.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           MSHR346]
 gi|242317698|ref|ZP_04816714.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1106b]
 gi|254175110|ref|ZP_04881771.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC
           10399]
 gi|254182138|ref|ZP_04888735.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1655]
 gi|254196575|ref|ZP_04902999.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           S13]
 gi|254201898|ref|ZP_04908262.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH]
 gi|254207232|ref|ZP_04913583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU]
 gi|254261052|ref|ZP_04952106.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1710a]
 gi|254295816|ref|ZP_04963273.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           406e]
 gi|254359734|ref|ZP_04976005.1| flagellar basal-body rod protein FlgG [Burkholderia mallei
           2002721280]
 gi|52208330|emb|CAH34263.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243]
 gi|52427990|gb|AAU48583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC
           23344]
 gi|76578176|gb|ABA47651.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1710b]
 gi|121227664|gb|ABM50182.1| flagellar basal-body rod protein FlgG [Burkholderia mallei SAVP1]
 gi|124294522|gb|ABN03791.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC
           10229]
 gi|126218526|gb|ABN82032.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           668]
 gi|126228080|gb|ABN91620.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1106a]
 gi|126243602|gb|ABO06695.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC
           10247]
 gi|134245025|gb|EBA45120.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           305]
 gi|147747792|gb|EDK54868.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH]
 gi|147752774|gb|EDK59840.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU]
 gi|148028948|gb|EDK86880.1| flagellar basal-body rod protein FlgG [Burkholderia mallei
           2002721280]
 gi|157806194|gb|EDO83364.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           406e]
 gi|160696155|gb|EDP86125.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC
           10399]
 gi|169653318|gb|EDS86011.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           S13]
 gi|184212676|gb|EDU09719.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1655]
 gi|217392035|gb|EEC32061.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           576]
 gi|225928167|gb|EEH24203.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504504|gb|ACQ96822.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           MSHR346]
 gi|238522491|gb|EEP85935.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8
           horse 4]
 gi|242140937|gb|EES27339.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1106b]
 gi|243062740|gb|EES44926.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20]
 gi|254219741|gb|EET09125.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei
           1710a]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 61/183 (33%), Gaps = 2/183 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D  N   +  S       Q  ++  +       
Sbjct: 82  TQGSLQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++   +     +     +         +A       L     N     E   S 
Sbjct: 142 IPQNANSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDAKGENLFA--ETTSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          + + Y  +  VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +
Sbjct: 200 APNVSQPGLNGAGTLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259

Query: 478 GVK 480
             +
Sbjct: 260 MSR 262



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 42/213 (19%), Gaps = 35/213 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++       Q F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDVAINGQGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +        + + +      S   +    T+  NA  +    +      Q    +A +  
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNANSLTIGSDGVVSVTQPGSNNAVQIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
            L+I+             +     T+S      
Sbjct: 172 ALQIATFINPAGLDAKGENLFAETTSSGAPNVS 204


>gi|224825779|ref|ZP_03698883.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002]
 gi|224602003|gb|EEG08182.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 2/191 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L    +V           A +   V   F+   + + +    +     +  + Q  +   
Sbjct: 74  LLGTQKVFTSGSITTTGQALDVAIVGQGFLQVQMSNGETGYTRAGQLQVNSDGQLVNAQG 133

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                         +V         I     +         +A       LL    N   
Sbjct: 134 LPIVPAITVPATATSVSIGETGTVSITQSGSTAQTEIGQLTLANFVNPTGLLALGDNL-- 191

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           + E   S +  +          + +       V + EE+  +I  +++Y ++ K++   D
Sbjct: 192 FQETTASGTPTVGNPGSDALGKLKQGALEGSNVQVVEEMVDMIAAQRTYEMNTKVLSAAD 251

Query: 470 KMLQTLLEGVK 480
            M+Q L + V+
Sbjct: 252 NMMQYLAQSVR 262



 Score = 50.0 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/183 (7%), Positives = 42/183 (22%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNPALWISKTGIQAQDARLGAIANNLANVNTVGFKRDRMVFEDLFYQVERQPGARVDANN 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  V +          K      +     A+    + Q F  ++           +  
Sbjct: 61  ASPSGVQLGNGTRLLGTQKVFTSGSITTTGQALDVAIVGQGFLQVQ------MSNGETGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +L+ + +    N     +   +   A     +   +            +    +++
Sbjct: 115 TRAGQLQVNSDGQLVNAQGLPIVPAITVPATATSVSIGETGTVSITQSGSTAQTEIGQLT 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|167835113|ref|ZP_02461996.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           MSMB43]
          Length = 262

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          +   D         +   N Q +   S               
Sbjct: 87  QQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAITMPQNA 146

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
                G   +++      N       +            A+    + E   S + ++   
Sbjct: 147 TSLTIGSDGVVSVTQPGSNNAVQIGALQIATFINPAGLDAKGENLFAETTSSGAPNVSQP 206

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  + + Y  +  VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  +
Sbjct: 207 GLNGAGTLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMSR 262



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/269 (8%), Positives = 56/269 (20%), Gaps = 34/269 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++       Q F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDVAINGQGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +        + + +      S   +    I   +        S   V   +  ++  +++
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVI-PAITMPQNATSLTIGSDGVVSVTQPGSNNAVQI 170

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               +  F++   +          +       + Q  +      +   + +   N    +
Sbjct: 171 GALQIATFINPAGLDAKGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVESSNVNVVQEL 230

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTS 247
           V        +E   + +        TVT 
Sbjct: 231 VNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259


>gi|254496889|ref|ZP_05109737.1| flagellar basal body rod protein FlgG [Legionella drancourtii
           LLAP12]
 gi|254353908|gb|EET12595.1| flagellar basal body rod protein FlgG [Legionella drancourtii
           LLAP12]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 2/195 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            +       L    ++      +    A +       F    + D      +  + +I  
Sbjct: 65  GINTGTGVHLVSTQKLFEQGSIQHTNNAYDVAIQGQGFFTILMPDGTQAYTRNGAFSIDS 124

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
             Q   +  +L             +               +   N     +        L
Sbjct: 125 TGQVVDSHGYLLQPAITLPAQTLGITISQDGVVSATVAGSTTPTNLGTIQLTNFMNPAGL 184

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
               +N     E   S +  L+         + ++      VN+ EEL  +I+ ++ Y I
Sbjct: 185 QPIGQNLYT--ETQSSGNPTLNNPGSNGLGTLLQNNLEASNVNVVEELVNMIQAQRGYEI 242

Query: 461 SNKLIMFTDKMLQTL 475
           + K +   D MLQ L
Sbjct: 243 TAKGMQTVDNMLQYL 257



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/212 (6%), Positives = 38/212 (17%), Gaps = 33/212 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               +++      +  A+I  N+ N +   Y +                           
Sbjct: 4   ALWVSKSGLEAQEKTIATIANNLANVNTTGYKKDRAQFEDLLYQNTSQAGAQSSENSIIP 63

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
               +   V +V+ +          +   ++A       Q F  +               
Sbjct: 64  TGINTGTGVHLVSTQKL---FEQGSIQHTNNAYDVAIQGQGFFTIL------MPDGTQAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                          +    +L   +   A+ +    +        +           I 
Sbjct: 115 TRNGAFSIDSTGQVVDSHGYLLQPAITLPAQTLGITISQDGVVSATVAGSTTPTNLGTIQ 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                            +            + 
Sbjct: 175 LTNFMNPAGLQPIGQNLYTETQSSGNPTLNNP 206


>gi|312126442|ref|YP_003991316.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776461|gb|ADQ05947.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 267

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SATSGDPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SMANNLKR 267



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E V+     S+  + +      K+ + +I +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGFKIKIVRFINPQGLLAEG 193


>gi|220903671|ref|YP_002478983.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867970|gb|ACL48305.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 59/218 (27%), Gaps = 4/218 (1%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                    ++ +  + +    Q  +      +   F++ D     +     +      +
Sbjct: 45  MYQTMRMAGSITEGDNRLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGFFQ 104

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
              N              Q     +                KN++          D+  +
Sbjct: 105 VDVNGELMYTRAGSFKLNQDGVVVTANGYILQPEFAVPPETKNISISSSGHIAALDAQGQ 164

Query: 385 NFIF--DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                  P+        L    RN         S      +        +++ +     V
Sbjct: 165 EIAGAEIPLYTFINYAGLDARGRNLFTP--TEASGEAVEGIPGTDNVGTLAQGFLEMSNV 222

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  +I  +++Y +++K I  +D ML   ++  +
Sbjct: 223 EVVDEMVNMIVGQRAYEVNSKSIQTSDSMLGIAVQLKR 260



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/238 (7%), Positives = 46/238 (19%), Gaps = 31/238 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++                   I  N+ N +   + +                        
Sbjct: 1   MMRSLWTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMRMAGSITEGDN 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V         +K           + +        F  +       D       
Sbjct: 61  RLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGFFQV-------DVNGELMY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA--REVQKIRADADKEIELE 159
                 + + +      +  IL        E    + ++S     +     +        
Sbjct: 114 TRAGSFKLNQDGVVVTANGYILQPEFAVPPETKNISISSSGHIAALDAQGQEIAGAEIPL 173

Query: 160 ISNLRRFLSELTVVN-DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
            + +     +    N       +    +     D    L Q   E+  +  +    N 
Sbjct: 174 YTFINYAGLDARGRNLFTPTEASGEAVEGIPGTDNVGTLAQGFLEMSNVEVVDEMVNM 231


>gi|77165836|ref|YP_344361.1| hypothetical protein Noc_2373 [Nitrosococcus oceani ATCC 19707]
 gi|254434083|ref|ZP_05047591.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27]
 gi|76884150|gb|ABA58831.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090416|gb|EDZ67687.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 2/176 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  +   + +       F    + D      +  +  I  N Q  ++  +    G 
Sbjct: 81  FTQGGLTQTGNSLDMAIQGRGFFQILMPDGSLAYTRDGTFQIDANGQLVTSSGYPVQPGI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +V   +     +    D          +A       L     N   + E   S
Sbjct: 141 TIPESALSVTVGSDGIVSVLMAGDGTPIQAGNLQLADFINPAGLQPTGNNL--FKETASS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                 +        + +       VN+ EEL  +I+ +++Y +++K I  TD+ML
Sbjct: 199 GVAQTGIPGLNGIGTLVQGALEGANVNVVEELVNMIETQRAYEMNSKAISSTDEML 254



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 28/143 (19%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +      A+   +    + A+I  N+ N +   + R   +                    
Sbjct: 1   MNQALWIAKTGLDAQQTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNT 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R+           L    +++      + F  +           +   
Sbjct: 61  LLPSGLMLGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQIL------MPDGSLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
                 +          S   + 
Sbjct: 115 TRDGTFQIDANGQLVTSSGYPVQ 137


>gi|315453407|ref|YP_004073677.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179]
 gi|315132459|emb|CBY83087.1| flagellar hook protein, FlgE [Helicobacter felis ATCC 49179]
          Length = 601

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 9/234 (3%)

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           +  F++     ++  +        +++++RD      +     +           +P+  
Sbjct: 374 SDFFMNSSKDPADPKTQEKWDVESSIIEVRDRTPITTKPVRQSVTFDK-EGKMHANPVTL 432

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           + +  P  +  D   D  +         I    Q       L +        +  +    
Sbjct: 433 DFKGSPLTYSIDKSDDYTSSDVPYDDSKIYQISQDGKPKGLLANMRIDDDGVIHLIFTNG 492

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---MKSQ 426
               +      +F  +     V        L +    ++       S +  +       +
Sbjct: 493 ALETMGRVGIATFINDQGLKKVG-----SNLFDIQNATVNGRAAPLSGNPIIGWDRDDGK 547

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + F  +   Y  T  VN    L+ LI +++ Y+++ K     D +++  +   +
Sbjct: 548 LKFGKVMHKYLETSNVNAGHSLTNLILMQRGYSMNAKAFTTGDDLIKEAINLKR 601



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 28/154 (18%), Gaps = 23/154 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQ 55
           +      A +          S+  NI N +   Y R D            +    TV   
Sbjct: 1   MNDTILNAYSGIKTHQFGIDSVSNNIANINTVGYRRNDPEFKSLFASHLNTLGGNTVTAN 60

Query: 56  RSENKNMF--------DKVLHAHSSAIGQQRLLQSFE--------ALKEMMSADDHYNNS 99
                           D       S          +         +++           +
Sbjct: 61  DRNYGAAAGGNAISSKDGEYMPSDSDFNMAYQGSGWFIVGPNKNGSMQINKDGYQQAQEN 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                       + Y  N     +    +   + 
Sbjct: 121 FYTRDGNFLRDADGYIVNSHGYYVYGVDLHKIKN 154


>gi|330943207|gb|EGH45614.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 368

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 46/265 (17%), Gaps = 11/265 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60
            FN   +    A++       NI N     +                      +  S   
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   +  S               +      +                E Y  N S 
Sbjct: 62  TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSSN 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D    VV         +  +R +A        S +    +  +         
Sbjct: 122 MKLQGYNVDANGSVVT------GALSDLRVNASNLDPKATSTITNSANLNSTTPLPTVAT 175

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +                       +                                 
Sbjct: 176 FDATDTKSYNNKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTAPDK 235

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGS 265
           N  T  S  N +   G  V ++  +
Sbjct: 236 NDLTFDSSGNLVTTAGAAVPTDSAN 260


>gi|149203125|ref|ZP_01880096.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035]
 gi|149143671|gb|EDM31707.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035]
          Length = 261

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 56/206 (27%), Gaps = 8/206 (3%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              +   D  V     QL    R    S          +     L I  G          
Sbjct: 51  AGTINAADGTVLPTGVQLGLGVRPSAISVQLAQGSLTQTNGDLDLAIDGGGYLEVRLPSG 110

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH------YCDSFNKNF 386
               T     +  ++   +   G      +   ++                   +  +  
Sbjct: 111 QSGYTRDGALKRSADGVIVNSEGFPIAPEITIPEDARSITINAEGEVFAFFQDTAEAQQL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               + G      L     N   ++E   S   ++    Q     + + Y     V+   
Sbjct: 171 GQIDLVGFTNPKGLEAIGGNL--FVETEASGPANVTTAGQDGLGTLRQGYLEDSSVDPVR 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E++ LI+ ++ Y ++ K+I   D+ML
Sbjct: 229 EITELIEAQRGYELNAKVITAADQML 254



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/180 (8%), Positives = 37/180 (20%), Gaps = 28/180 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
           +   A         +  +I  N+ N     Y  R                          
Sbjct: 3   ILKIAATGMAAQQMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTINAADGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L   +  +        +  +            S    
Sbjct: 63  PTGVQLGLGVRPSAISVQLAQGSLTQTNGDLDLAIDGGGYLEV------RLPSGQSGYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              L+ S +    N     +   +    +      N         +  A+ +   +I  +
Sbjct: 117 DGALKRSADGVIVNSEGFPIAPEITIPEDARSITINAEGEVFAFFQDTAEAQQLGQIDLV 176


>gi|300871597|ref|YP_003786470.1| flagellar basal-body rod protein FlgG [Brachyspira pilosicoli
           95/1000]
 gi|300689298|gb|ADK31969.1| flagellar basal-body rod protein, FlgG [Brachyspira pilosicoli
           95/1000]
          Length = 264

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 LL    N   + E   S            F  I + +     V + +E+  +I 
Sbjct: 180 FINQAGLLSIGDNL--YKETIASGPAFEGEAGSKGFPRIHQGFVEMSNVKVVDEMVDMIV 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++Y +++K +  +D +L T++   +
Sbjct: 238 AQRAYEMNSKAVQTSDNLLATVVNLKR 264



 Score = 63.5 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 32/157 (20%), Gaps = 33/157 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A +  N    +  +I  N+ N +   Y +                        
Sbjct: 1   MLRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  +   V     +          L A  + +      + F  +           +
Sbjct: 61  VTPVGLQTGLGVKSAATQKMFDQ---GSLQATGNKLDLALEGEGFFQVL------MPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
                    +          +   L   +I     +V
Sbjct: 112 VSYTRDGSFKVDANGQLVTSNGYKLVPEIIFPENFLV 148


>gi|118589981|ref|ZP_01547385.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614]
 gi|118437478|gb|EAV44115.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614]
          Length = 262

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      ++    +V L     N   + E   S S    +     F  I + Y  +  V+
Sbjct: 168 RELGQLTLSNFANDVGLEPVGGNL--FRETEASGSPVSGVAGDPGFGVIRQGYLESSNVD 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +E++ LI  ++ Y +++K++   D+M  T+  G++
Sbjct: 226 PVKEITALISAQRGYEMNSKVMKAADEMAGTVTNGIR 262



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/184 (7%), Positives = 38/184 (20%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        +  NI N +  ++ R     +                     
Sbjct: 3   ALAIAATGMSAQQMNVEVVANNIANMNTTSFKRSQAEFSDLLYQAERLQGVPNRGGEDPV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L    +        + +  +          + + 
Sbjct: 63  PEGAQLGLGVRTAGIRKLH---AQGSLTNTGNQFDVALDGRGWFEI------TGPDDETL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     +    +   +I   E +    N S +   K+  +       ++
Sbjct: 114 FTRAGSFNKNADGRLVTIDGYPVEPAIIVPQETIEVVVNESGQVFAKVDGEMAPRELGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TLSN 177


>gi|315125986|ref|YP_004067989.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913]
 gi|315014500|gb|ADT67838.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913]
          Length = 261

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 56/206 (27%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P  ++  L Q+   +      +++   +       E      +       F      D 
Sbjct: 51  QPGAQVDELNQLPSGIQVGTGVRINGTQKQFTEGSFETTSNQLDVAIAGQGFFQIESPDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           +    +     +       ++            +    V              D+     
Sbjct: 111 ELLFTRNGQFQLNSESLLVNSNGLPLAQNIALPEGTTKVSIGTDGTVTAVVGKDAQAVEL 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                        L     N   + E   S      +  +  F  + +       V++ +
Sbjct: 171 GQMLTVNFANPAGLQSLGGNL--YRETAASGEPVEGIPGEDAFGGLQQFTIEGSNVSVVD 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I V+++Y ++ K++   D+ML
Sbjct: 229 EMVSMIAVQRAYEMNAKVVSAADEML 254



 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/183 (9%), Positives = 44/183 (24%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N     + +   +                    
Sbjct: 1   MNSALWVSKTGLAAQDLRMTTISNNLANVSTAGFKKDRAVFEDLFYQVQKQPGAQVDELN 60

Query: 46  -SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V T    N       +      S+ +      Q F  ++              
Sbjct: 61  QLPSGIQVGTGVRINGTQKQFTEGSFETTSNQLDVAIAGQGFFQIE------SPDGELLF 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + + + ES   N +   L + +         +  T       +  DA      ++ 
Sbjct: 115 TRNGQFQLNSESLLVNSNGLPLAQNIALPEGTTKVSIGTDGTVTAVVGKDAQAVELGQML 174

Query: 162 NLR 164
            + 
Sbjct: 175 TVN 177


>gi|163733143|ref|ZP_02140587.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och
           149]
 gi|161393678|gb|EDQ18003.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och
           149]
          Length = 246

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 367 NLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++    ++  ++ D+ +        +AG      L     N     E   S +  +    
Sbjct: 135 SINTSGEVFAYFSDATDAELLGQFNMAGFTNAKGLEALGGNLFA--ETEASGAAIVSTPG 192

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +     + + Y  +  V+   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 193 EDGLGTVRQGYLESSSVDAVREITELIEAQRGYEMNAKVISAADQMM 239



 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 33/159 (20%), Gaps = 28/159 (17%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVTVVTQRS--- 57
           +  +I  N+ N     Y  R                          P  V +        
Sbjct: 2   RVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTVNATDGTVLPTGVQLGLGVRPSA 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +  +    L A    +        F  +            +       L+   E     
Sbjct: 62  VSVQLQQGSLAATGGDLDLAIEGIGFLEV------TLPSGQAAYTRDGGLKRDAEGLIVT 115

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                +   ++   +    + NTS           D E+
Sbjct: 116 SDGYPVEPEIVIPDDARSISINTSGEVFAYFSDATDAEL 154


>gi|57167709|ref|ZP_00366849.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228]
 gi|305433215|ref|ZP_07402371.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20]
 gi|57020831|gb|EAL57495.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228]
 gi|304443916|gb|EFM36573.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20]
          Length = 263

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 48/175 (27%), Gaps = 2/175 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             + +       F    + D      +    T        +   +         +    +
Sbjct: 91  TDSLDMAIAGNGFFQIQLPDGTIAYTRNGQFTKDNEGNIVNADGYRLLPEMTIPEGATAI 150

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    + +
Sbjct: 151 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAT 208

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q     I   +     V L EE++ LI  +++Y   +K I  +D ML  + +  +
Sbjct: 209 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR 263



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 42/208 (20%), Gaps = 31/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++   + A         Q      NI N +   + +                        
Sbjct: 1   MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKGRAEFADLMYQVMKYAGTSTSATT 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSS-AIGQQRLLQSFEALKEMMSADDHYNNSP 100
            SP  + V          K   +  L A S+ ++        F  ++             
Sbjct: 61  LSPSGIEVGIGVRPTAVTKVFTEGNLKATSTDSLDMAIAGNGFFQIQ------LPDGTIA 114

Query: 101 THYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                +     E    N     L              V    T +  +   + +      
Sbjct: 115 YTRNGQFTKDNEGNIVNADGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQV 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
             +  +          N  ++   +   
Sbjct: 175 ELVQFINPAGLHSMGDNLYLETGASGAP 202


>gi|150388209|ref|YP_001318258.1| flagellar basal body rod protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948071|gb|ABR46599.1| flagellar basal body rod protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 363

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/249 (8%), Positives = 65/249 (26%), Gaps = 8/249 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +    A ++      NI N +   + +        PE    V  R  N ++
Sbjct: 1   MFRGLYTATSGMQTAQRKLDVTSNNIANINTTGFKKDVVAAESFPE----VLIRKINHDI 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +  + +S     +       +        +       +  +      + + +    D+
Sbjct: 57  RPRPFNLNSGVEVTREGEALGLSTDAGFFRVETDQGISHNREASFAPDEDGFLRTYRRDL 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G+        ++        +V     + + + +L        L    + +      + 
Sbjct: 117 NGEIDASRGNYLLDATGQRV-QVDNGNLEVNNQGQLTFGGGATNLLYRPLGHVLGTMNSG 175

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +    +    +  + +  + +      +       + T +G          ++ E    
Sbjct: 176 VRIQKIETNFAQGAVAETANPL---DVALNGQGFFRILTPNGEMYTRNGNFTMSNEGQLV 232

Query: 243 YTVTSESNP 251
            T   E   
Sbjct: 233 TTEGHEVEG 241



 Score = 44.6 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
             + + Y     +N  +E+  +I   + Y  + K++   D++LQ  +
Sbjct: 311 GEVLQGYLEESNINSIQEMVEMISTFRDYEANQKVVQAYDEILQKAV 357


>gi|239815249|ref|YP_002944159.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110]
 gi|239801826|gb|ACS18893.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110]
          Length = 262

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +     S        S+      ++ +     V L EE+  L+  ++ Y  + K++  +D
Sbjct: 192 YRSSTGSGEAIAAKASEDGMGSFAQGFLEGSNVKLTEEMVNLMVAQRVYEANVKVMQASD 251

Query: 470 KMLQTLLEGVK 480
           +ML  ++ G++
Sbjct: 252 EMLG-MINGLR 261



 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 41/212 (19%), Gaps = 34/212 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      +            +I  N+ N +   + +     +                  
Sbjct: 1   MFDALYISATGMQAQQLNVDTIANNLANVNTTGFKKSKVGFSDLMVREAGRLAQTPQEAG 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V + +            L    SA       + F  +           +
Sbjct: 61  ILGAESRLGAGVGIASVSKLFDM---GDLKKTESAFDIAIQGEGFLEV------TMPDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           S        + + +          L   V                 V+         IE+
Sbjct: 112 SSFTRGGTFKVNRDGLLATSGGFPLKSNVAIPDNA-QNMQIDGDGRVRVQVGGQSTPIEV 170

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
              +L RF S   ++        +S       
Sbjct: 171 GQLDLVRFTSPSALLPQGDNLYRSSTGSGEAI 202


>gi|86356312|ref|YP_468204.1| flagellar basal body rod protein FlgG [Rhizobium etli CFN 42]
 gi|86280414|gb|ABC89477.1| flagellar basal-body rod protein [Rhizobium etli CFN 42]
          Length = 262

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/243 (6%), Positives = 43/243 (17%), Gaps = 38/243 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   + R     T                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    + +    + + F  ++           + 
Sbjct: 63  PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    + +     +              + E  +      + ++            
Sbjct: 114 YTRAGAFNKNDQGQLVTIDGYEVLPGITIPQGSTELTISRSGEVSAKLPGQTDPTVLGQL 173

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                +     +    N   +   AS        D+      K   +   +         
Sbjct: 174 TLADFVNEAGLQPIGDNL-FQETPASGEAVVGNPDEEGFAYMKQGYLESSNVDPVKEITE 232

Query: 218 VVY 220
           ++ 
Sbjct: 233 LIS 235



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 4/169 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          I+  D       +     N Q +       +          +
Sbjct: 87  TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTIDGYEVLPGITIPQGS 146

Query: 365 VKNLAGYPDLINHYCDSFNKNFI--FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        ++          +     +A       L     N   + E   S    + 
Sbjct: 147 TELTISRSGEVSAKLPGQTDPTVLGQLTLADFVNEAGLQPIGDNL--FQETPASGEAVVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253


>gi|83816512|ref|YP_446741.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM
           13855]
 gi|294508677|ref|YP_003572736.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8]
 gi|83757906|gb|ABC46019.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM
           13855]
 gi|294345006|emb|CBH25784.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8]
          Length = 262

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 53/189 (28%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              R        K   + +       F      D      +  + T+       +     
Sbjct: 76  ATVRNFSQGSFSKTGNSLDLAINGDGFFQVQQPDGSLAYTRDGTFTLSSEGNIVTQTGLK 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +              +S         +A    +  L     N     
Sbjct: 136 VQPNINVPPNAVEISIDQEGTVKARLQGESEMVELGQMELARFPNSAGLRPQGGNLYEQ- 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               S    +    +    ++ + +     V + +E++ LI+ +++Y ++++++  +D+M
Sbjct: 195 -TESSGEPFIGTPGRGGLGNVRQGFLEKGNVKVVQEMTSLIQAQRTYELNSRMVTTSDEM 253

Query: 472 LQTLLEGVK 480
           +QT     +
Sbjct: 254 MQTANNVKR 262



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 31/157 (19%), Gaps = 8/157 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
               A            +I  N+ NA+   Y R   +           +   +       
Sbjct: 5   SLQTAALGMQAQQTSIDNIANNLSNANTTGYKRSRVVFQDLLYENVQASAEGQTDGAEPA 64

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            L   S       +           S         +  ++   D      +        +
Sbjct: 65  ELQIGSGTTAVATVRN--------FSQGSFSKTGNSLDLAINGDGFFQVQQPDGSLAYTR 116

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                          +  +VQ         +E+ I  
Sbjct: 117 DGTFTLSSEGNIVTQTGLKVQPNINVPPNAVEISIDQ 153


>gi|149191155|ref|ZP_01869413.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1]
 gi|148834993|gb|EDL51972.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1]
          Length = 261

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 4/195 (2%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
               QL    RV+            N+     L I              +  T     Q 
Sbjct: 63  PTGIQLGNGVRVVGTEKVFTQGNVQNTNQQFDLAILGDGFFQIENSDGELLYTRNGQFQT 122

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE-- 402
            S+   +   G      +             +    +     +     G  T V  +   
Sbjct: 123 NSDGQLVNTQGYPLIPEIVIPPEATLVSITADGVATATIPGQVNPEALGQITIVKFMNPA 182

Query: 403 --YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
              A+    + E   S      +        + +       V + EE+  +I  +++Y +
Sbjct: 183 GLAAQGGNLFAETEGSGEAVELVAGTEGSGQLKQGALEGSNVQVVEEMVDMIATQRAYEM 242

Query: 461 SNKLIMFTDKMLQTL 475
           S K++   D+MLQ +
Sbjct: 243 SAKMVSAADEMLQYI 257



 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/204 (7%), Positives = 43/204 (21%), Gaps = 27/204 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           + +    ++        +  +I  N+ N +   + R   +      +V            
Sbjct: 1   MHSALWISKTGMAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELN 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R            +   +       L   F  ++              
Sbjct: 61  EHPTGIQLGNGVRVVGTEKVFTQGNVQNTNQQFDLAILGDGFFQIEN------SDGELLY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + + + +    N     L   ++   E  + +          I    + E   +I+
Sbjct: 115 TRNGQFQTNSDGQLVNTQGYPLIPEIVIPPEATLVSITADGVATATIPGQVNPEALGQIT 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKH 185
            ++              F      
Sbjct: 175 IVKFMNPAGLAAQGGNLFAETEGS 198


>gi|258592560|emb|CBE68869.1| Flagellar basal-body rod protein flgG (Distal rod protein) [NC10
           bacterium 'Dutch sediment']
          Length = 262

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           ++      ++       L    RN    L  + S               I + +     V
Sbjct: 167 SQQIGTIELSRFINPAGLQSVGRNLS--LPTSASGDPTSGAPGTQGLGTIGQGFLELSNV 224

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + EE+  LI  +++Y   +K +   D+MLQ      +
Sbjct: 225 KVVEEMVNLIMSQRAYEAGSKAVQAADEMLQVSNNIRR 262



 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 36/209 (17%), Gaps = 18/209 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT--------------TISPE 48
           ++     A            +I  N+ N +   + R                   T S  
Sbjct: 1   MIRALFSAVAGMQAQQLNLDNIANNLANVNTTGFKRSRLDFQDLFYQTYRPAGASTASGA 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKL 107
            + V  Q                    Q           +                    
Sbjct: 61  EIPVGIQVGHGSKPIASQRIYIQGDPQQTENPLDLMIEGDGFFQVLRPDGTIAYTRAGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLR 164
           +              L   V   A+ +     +    +  +    A            + 
Sbjct: 121 KRDANGRVVTSDGFALQPEVSIPAQAMTIHVGSDGVVSATIPGQTASQQIGTIELSRFIN 180

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
               +    N ++    +    +     Q
Sbjct: 181 PAGLQSVGRNLSLPTSASGDPTSGAPGTQ 209


>gi|316932823|ref|YP_004107805.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris
           DX-1]
 gi|315600537|gb|ADU43072.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris
           DX-1]
          Length = 262

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/181 (9%), Positives = 48/181 (26%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +     P   + +          I+  D         +   +   R   +          
Sbjct: 82  TQGTLSPTGNDLDMAVRGEGFFKIQMPDGTFAYTRDGSFTTDNTGRIVTAGGNPVQPTIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                          ++          +   +             +    ++E   S + 
Sbjct: 142 IPNGATSITVATNGQVSVTISGSTTPTVLGQIGLTRFINKAGLQPQGDNLFVETPASGTP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              + +      I +       V +  E+S LI  +++Y ++ K++   D+MLQ+     
Sbjct: 202 QDGIATADGLGDIMQKTLEQANVEVVTEISDLISAQRAYEMNAKVVSAADQMLQSTANMF 261

Query: 480 K 480
           +
Sbjct: 262 R 262



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/181 (7%), Positives = 29/181 (16%), Gaps = 34/181 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI N     + ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGVDIGGGVKTVGTPRL---MTQGTLSPTGNDLDMAVRGEGFFKIQ------MPDGTFA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                               + +  T+            T+ +    I       +  +I
Sbjct: 114 YTRDGSFTTDNTGRIVTAGGNPVQPTITIPNGATSITVATNGQVSVTISGSTTPTVLGQI 173

Query: 161 S 161
            
Sbjct: 174 G 174


>gi|146295641|ref|YP_001179412.1| hypothetical protein Csac_0595 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409217|gb|ABP66221.1| protein of unknown function DUF1078 domain protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 267

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SAASGDPVSEEEIEGPKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SMANNLKR 267



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A             I  N+ N +   + +                   + +  
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVIAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFSEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E V+     S+  + +      K+ E +I +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDAEGQIQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGFKIKIVRFINPQGLLAEG 193


>gi|203284668|ref|YP_002222408.1| flagellar basal-body rod protein [Borrelia duttonii Ly]
 gi|201084111|gb|ACH93702.1| flagellar basal-body rod protein [Borrelia duttonii Ly]
          Length = 265

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L     N   + E   S      +        + +       V +
Sbjct: 171 ELGQIEIARFVNPAGLNAIGNNI--FKETIGSGEEISGIPGSNGMGKLKQGMLEMSNVAI 228

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  +I  +++Y I++K I  +D ML       K
Sbjct: 229 AEEMVTMIVAQRAYEINSKAIHTSDNMLGIANNLKK 264



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/170 (5%), Positives = 32/170 (18%), Gaps = 27/170 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +          +I  N+ N +   + +                        
Sbjct: 1   MMRALWTSASGMKAQQYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATENT 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                 +        + ++      L   +           F  +               
Sbjct: 61  VTPLGNQVGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVL------LSDGTYGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                 +             IL   +    E +  +   S   +  ++ +
Sbjct: 115 TRDGSFKIDANGNLVTNQGYILLPEISFPEEYIKNSIAISQEGIISVKVN 164


>gi|331005440|ref|ZP_08328819.1| Flagellar basal-body rod protein flgG [gamma proteobacterium
           IMCC1989]
 gi|330420716|gb|EGG95003.1| Flagellar basal-body rod protein flgG [gamma proteobacterium
           IMCC1989]
          Length = 258

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 ++       L         +L   +S         ++ F  + + +  +  VNL
Sbjct: 165 PVGQLELSTFLNESGLSSLGGGI--YLPSLKSGDPSYGQPGEIGFGTLQQGFIESSNVNL 222

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EEL+ L+  ++ Y ++ +++   D ML +++  ++
Sbjct: 223 VEELTSLMSAQRGYELNARVVQAADDML-SIINTLR 257



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 30/137 (21%), Gaps = 11/137 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L  FN +     +   Q  +I  N+ N +   Y +   +          +         
Sbjct: 1   MLDAFNISATGLQSQQTQVETIANNLSNVNTDGYKKSKVIFQDIVSKQLGINTNGLINQA 60

Query: 63  FDKVLHAHSSAI-----------GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            +      S+ +              R L  F      +             +  L    
Sbjct: 61  SNNTGIGSSANLINKIFTGGDPKATDRPLDIFIQGSGFLEVVMPDGRYGYTRVGNLNVDE 120

Query: 112 ESYSKNLSEDILGKTVI 128
                N     L   V 
Sbjct: 121 NGVLTNSDGFSLSSLVQ 137


>gi|325529016|gb|EGD06029.1| flagellar basal body rod protein FlgG [Burkholderia sp. TJI49]
          Length = 262

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 2/182 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  N   +  S       Q  ++  +       
Sbjct: 82  TQGSLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +     S         +A       L     N     E   S 
Sbjct: 142 VPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEARGENLFS--ETTSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +
Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259

Query: 478 GV 479
             
Sbjct: 260 MK 261



 Score = 50.8 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 21/143 (14%), Gaps = 33/143 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +                          
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAGFEDLLYQTIRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLTQTGNSKDVAINGAGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSED 121
           +        + + +      S  
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGY 134


>gi|330899402|gb|EGH30821.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 93

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%)

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
                W E   S              +I+        V+L  EL  LIK + +Y  + K 
Sbjct: 19  AGGTNWRETFASGVPVSGAPQSGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKT 78

Query: 465 IMFTDKMLQTLLEG 478
           I     ++QT ++ 
Sbjct: 79  ISTQSTIMQTTIQM 92


>gi|254251193|ref|ZP_04944511.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158]
 gi|124893802|gb|EAY67682.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158]
          Length = 262

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 74/252 (29%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +    + +++    + +N       V        + +    +  Q           
Sbjct: 11  GMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQTELPSGLQLGT 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            + ++A   + +         + +          +   D         +   N Q +   
Sbjct: 71  GVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S                    G   +++      N       +            A+   
Sbjct: 131 SSGYQILPAITVPQNATSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFINPAGLEAKGEN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + E   S + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +
Sbjct: 191 LFAETTSSGAPNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTS 250

Query: 469 DKMLQTLLEGVK 480
           D+MLQT+ +  +
Sbjct: 251 DQMLQTVTQMSR 262



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 41/204 (20%), Gaps = 17/204 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           + + +      S   +    TV  NA  +    +      Q    +A +   L+I+    
Sbjct: 121 QTNAQGQLVTSSGYQILPAITVPQNATSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFIN 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189
                    +     T+S      
Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVS 204


>gi|221199741|ref|ZP_03572784.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           CGD2M]
 gi|221208654|ref|ZP_03581654.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           CGD2]
 gi|221171465|gb|EEE03912.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           CGD2]
 gi|221179980|gb|EEE12384.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           CGD2M]
          Length = 262

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 2/182 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  N   +  S       Q  ++  +       
Sbjct: 82  TQGSLTQTGNSKDVAINGSGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +     S         +A       L     N     E   S 
Sbjct: 142 VPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +
Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259

Query: 478 GV 479
             
Sbjct: 260 MK 261



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 22/143 (15%), Gaps = 33/143 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLTQTGNSKDVAINGSGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSED 121
           +        + + +      S  
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGY 134


>gi|161526184|ref|YP_001581196.1| flagellar basal body rod protein FlgG [Burkholderia multivorans
           ATCC 17616]
 gi|189349100|ref|YP_001944728.1| flagellar basal body rod protein FlgG [Burkholderia multivorans
           ATCC 17616]
 gi|221215573|ref|ZP_03588536.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           CGD1]
 gi|160343613|gb|ABX16699.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           ATCC 17616]
 gi|189333122|dbj|BAG42192.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC
           17616]
 gi|221164561|gb|EED97044.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans
           CGD1]
          Length = 262

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 2/182 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  N   +  S       Q  ++  +       
Sbjct: 82  TQGSLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +   ++         +     S         +A       L     N     E   S 
Sbjct: 142 VPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +
Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQ 259

Query: 478 GV 479
             
Sbjct: 260 MK 261



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 22/143 (15%), Gaps = 33/143 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLTQTGNSKDVAINGAGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSED 121
           +        + + +      S  
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGY 134


>gi|170737040|ref|YP_001778300.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia
           MC0-3]
 gi|169819228|gb|ACA93810.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia
           MC0-3]
          Length = 261

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 3/135 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYAR 405
           N   L     +          ++    +                 +A       LL    
Sbjct: 129 NAQGLPLVPGIDIPPEAVGITISENGTVSVSTGAGKTLAEVGQLQLAQFVNPAGLLALGG 188

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N     E   S +       Q     I +       V   EE+  +I  +++Y ++ K++
Sbjct: 189 NLYA--ETVASGAPTESEPGQNGIGTIKQGALEGSNVLAVEEMVEMIAAQRTYEMNTKVL 246

Query: 466 MFTDKMLQTLLEGVK 480
              D M+Q L +  +
Sbjct: 247 SAADNMMQYLSQAAR 261



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 28/141 (19%), Gaps = 26/141 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNHAMWISKTGIQAQDAKLQAIANNLANVNTVGFKRDRAVFEDMFYRAERQPGAQVSDNA 60

Query: 47  -PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
               V +                 L      +    +   F  ++               
Sbjct: 61  TGPGVQLGNGTRIAGTQKVFTTGALQETGQPLDVAVVGNGFLQVE------MPNGEVGYT 114

Query: 103 YISKLRDSLESYSKNLSEDIL 123
              +LR + +    N     L
Sbjct: 115 RAGQLRLNDQGRLTNAQGLPL 135


>gi|322421662|ref|YP_004200885.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18]
 gi|320128049|gb|ADW15609.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18]
          Length = 262

 Score = 65.1 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 63/252 (25%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               + +N + + +    S +                        A              
Sbjct: 11  GMQAQQLNIDVVANNLANSSTTGFKKSRADFQDLMYQTEKTTGAPATNATTVPTGIQVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   A   + +           +          ++  D       + ++  + Q R   
Sbjct: 71  GVRPGAVAKVFTTGTIVHTGNELDLAIQGDGFLQVQQSDGSTAYTRAGSLKKDGQGRVVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S  +                 G    ++              +   +        A    
Sbjct: 131 SDGQPVIPEVLIPSNATSVSIGTDGTVSVQQAGQTAATTVGTIQLASFTNPSGLNAIGKN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +L  + S +       Q     + + Y     V++ EE+  +I  +++Y I++K I  +
Sbjct: 191 LFLPTDSSGAATTGTAGQNGLGSLEQGYIEQSNVSVMEEMVSMIVSQRAYEINSKAIQAS 250

Query: 469 DKMLQTLLEGVK 480
           D MLQ      +
Sbjct: 251 DDMLQQAAALKR 262



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/180 (6%), Positives = 36/180 (20%), Gaps = 27/180 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A +           +  N+ N+    + +                       T
Sbjct: 1   MIRALWTAASGMQAQQLNIDVVANNLANSSTTGFKKSRADFQDLMYQTEKTTGAPATNAT 60

Query: 45  ISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V          K      +    + +        F  +++         ++  
Sbjct: 61  TVPTGIQVGLGVRPGAVAKVFTTGTIVHTGNELDLAIQGDGFLQVQQ------SDGSTAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                L+   +          +   V+  +     +  T      +            I 
Sbjct: 115 TRAGSLKKDGQGRVVTSDGQPVIPEVLIPSNATSVSIGTDGTVSVQQAGQTAATTVGTIQ 174


>gi|226327743|ref|ZP_03803261.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198]
 gi|225203447|gb|EEG85801.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198]
          Length = 153

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 27/136 (19%), Gaps = 21/136 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+   +        I  N+ N     + R+  +                    
Sbjct: 1   MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQT 60

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +P  + + T       +  + LH+  +              +                 
Sbjct: 61  NAPSGLQIGTGVR---PVATERLHSQGNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRD 117

Query: 105 SKLRDSLESYSKNLSE 120
              +          S 
Sbjct: 118 GSFQMDQNGQLVTTSG 133


>gi|312794499|ref|YP_004027422.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876700|ref|ZP_07736680.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796540|gb|EFR12889.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312181639|gb|ADQ41809.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 267

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SAASGDPVSEEEIEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SMANNLKR 267



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E V+     S+  + +      K+ + +I +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGLKIKIVRFINPQGLLAEG 193


>gi|222530298|ref|YP_002574180.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222457145|gb|ACM61407.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 267

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S       + +   + I + +     V + +E+  LI  +++Y I++K I   D ML
Sbjct: 200 SAASGDPMSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLIIAQRAYEINSKAIQTADDML 259

Query: 473 QTLLEGVK 480
                  +
Sbjct: 260 SMANNLKR 267



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 27/200 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPEN--- 49
           ++     A             I  N+ N +   + +                        
Sbjct: 1   MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    VT  +  K+  +  L    + +             E        N      
Sbjct: 61  PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAI-------QGEGFFVVSTPNGPRYTR 113

Query: 104 ISKLRDS-LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               + S +E   K ++ D        + E V+     S+  + +      K+ + +I +
Sbjct: 114 DGSFKVSNVEGQIKLVTSDGYPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQD 173

Query: 163 LRRFLSELTVVNDAIKFKTA 182
               +  +  +N        
Sbjct: 174 SGFKIKIVRFINPQGLLAEG 193


>gi|167568109|ref|ZP_02361025.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis
           EO147]
 gi|167574227|ref|ZP_02367101.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis
           C6786]
          Length = 262

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 54/181 (29%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          +   D         +   N Q +   S          
Sbjct: 82  TQGALQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                     G   +++      N       +            A+    + E   S   
Sbjct: 142 IPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQVATFINPAGLDAKGENLFAETTSSGQP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++          + + Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 202 NVSQPGLNGAGTLKQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMS 261

Query: 480 K 480
           +
Sbjct: 262 R 262



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 42/213 (19%), Gaps = 35/213 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++       Q F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGALQQTGNSKDVAINGQGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +        + + +      S   +    T+  NA  +    +      Q    +A +  
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVIPAITIPQNATSLTIGSDGVVSVTQPGSNNAVQIG 171

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
            L+++             +     T+S      
Sbjct: 172 ALQVATFINPAGLDAKGENLFAETTSSGQPNVS 204


>gi|307731361|ref|YP_003908585.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003]
 gi|307585896|gb|ADN59294.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003]
          Length = 262

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S       Q  ++  +       
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++   +     I+    +  +      +A       L     N     E   S 
Sbjct: 142 VPSNATSLTIGSDGAVSISVAGSTNTQQLGTMQLATFINPAGLDAKGENLFA--ETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL +
Sbjct: 200 APNVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 8/168 (4%), Positives = 32/168 (19%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + + +      S   +   +   +        +       +    + +
Sbjct: 121 QTNAQGQLVTSSGYQVIPAITVPSNATSLTIGSDGAVSISVAGSTNTQ 168


>gi|323527711|ref|YP_004229864.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001]
 gi|323384713|gb|ADX56804.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001]
          Length = 262

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S       Q  ++  +       
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++   +     I     +  +      +A       L     N     E   S 
Sbjct: 142 VPTNATSLTIGSDGAVSITVAGSTNTQQLGTMQLATFINPAGLDAKGENLFA--ETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL +
Sbjct: 200 APNVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + + +      S   +   +            +       +    + +
Sbjct: 121 QTNAQGQLVTSSGYQVIPAITVPTNATSLTIGSDGAVSITVAGSTNTQ 168


>gi|167628969|ref|YP_001679468.1| flagellar basal-body rod protein flgg, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591709|gb|ABZ83457.1| flagellar basal-body rod protein flgg, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 258

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENV 50
           ++     +            +I  N+ N +   Y +                    P  +
Sbjct: 1   MMRALYSSATGMIAQQLNMDTISNNLANVNTNGYKKSRAEFQDLLYSTIRTATAQVPTGM 60

Query: 51  TVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            V            +    +    +        + +  L       ++            
Sbjct: 61  QVGAGVRPSSITTIISSGNMVQTDNPYDLAITGEGYFRLIN----PNNDAVPFYTRDGSF 116

Query: 108 RDSLESYSKNLSEDILGK 125
           +   E Y  N     L  
Sbjct: 117 KLDKEGYLVNADGLRLDG 134



 Score = 59.7 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 51/210 (24%), Gaps = 2/210 (0%)

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
              A +     V    +                 +P            + +   D     
Sbjct: 51  TATAQVPTGMQVGAGVRPSSITTIISSGNMVQTDNPYDLAITGEGYFRLINPNNDAVPFY 110

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
            +  S  +       +      DG     +   ++   A       +             
Sbjct: 111 TRDGSFKLDKEGYLVNADGLRLDGFDPLPEGATDLDINADGMISYKNAVGERVDTGQRIQ 170

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           +        L    RN +       S               I++ Y  +  V + +E+  
Sbjct: 171 LYTFPNPAGLNREGRNLLTQ--SEASGEAIGGDAGADGRGRIAQRYLESSNVQVVDEMVA 228

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +I  +++Y ++ K I   D+ML       +
Sbjct: 229 MITAQRAYEVNTKAIQTADEMLGQANNLKR 258


>gi|254488392|ref|ZP_05101597.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101]
 gi|214045261|gb|EEB85899.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101]
          Length = 261

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 55/204 (26%), Gaps = 4/204 (1%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              +   D  V     QL    R    S          +     L I             
Sbjct: 51  AGSVSASDGTVLPTGVQLGLGVRPAAVSMQLAQGSLSVTGGDLDLAIEGKGFLEVTLPSG 110

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T     +       +   G      +   ++        +    ++    I   + 
Sbjct: 111 QAAYTRDGGLKRTGEGLIVTSDGFPVAPEIVIPEDARSISINASGEVFAYFDGNIAAQLL 170

Query: 393 GINTNVTLLEY----ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
           G  T           A     ++E   S +  +          + + Y     V+   E+
Sbjct: 171 GQFTMSGFSNAKGLEAIGGNLFVETEASGAALVATPGLNGLGTLRQGYLEDSSVDAVREI 230

Query: 449 SFLIKVEQSYNISNKLIMFTDKML 472
           + LI+ ++ Y ++ K+I   D+M+
Sbjct: 231 TELIEAQRGYEMNAKVISAADQMM 254



 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/205 (9%), Positives = 44/205 (21%), Gaps = 27/205 (13%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N     Y  R    +                     
Sbjct: 3   ALKIAATGMSAQQMRVETISNNLANMSTTGYNARRAEFSDLHYQQLARAGSVSASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102
           P  V +         +  +    L      +      + F  +        +  +     
Sbjct: 63  PTGVQLGLGVRPAAVSMQLAQGSLSVTGGDLDLAIEGKGFLEVTLPSGQAAYTRDGGLKR 122

Query: 103 YISKLRDSLESYSKNLS----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
               L  + + +         ED    ++  + E         A ++      +      
Sbjct: 123 TGEGLIVTSDGFPVAPEIVIPEDARSISINASGEVFAYFDGNIAAQLLGQFTMSGFSNAK 182

Query: 159 EISNLRRFLSELTVVNDAIKFKTAS 183
            +  +   L   T  + A    T  
Sbjct: 183 GLEAIGGNLFVETEASGAALVATPG 207


>gi|37360908|dbj|BAC98362.1| flagellar basal-body rod protein [Burkholderia glumae]
          Length = 251

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 58/170 (34%), Gaps = 2/170 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  S       Q  ++  +         +   ++   A
Sbjct: 83  DVAINGQGFFQVLMPDGTTAYTRDGSFQANNQGQLVTSAGYQVLPAITVPQNAQSLTIGA 142

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A       L    +N     E   S + ++        
Sbjct: 143 DGVVTVTQPGSTNAVQIGSMQLATFINPEGLNALGQNLFA--ETTSSGAPNVTTPGLNGA 200

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +++ Y  +  VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 201 GSLNQGYVESSNVNVXQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 250



 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 29/132 (21%), Gaps = 7/132 (5%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
            N    Q   I  N+ N     +     +             ++  +   +        +
Sbjct: 1   MNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLY-------QTVRQPGANSTQQTELPS 53

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
             Q        A + + +  +      +  ++                   +     A  
Sbjct: 54  GLQLGTGVQQVATERLYTQGNLQQTGNSRDVAINGQGFFQVLMPDGTTAYTRDGSFQANN 113

Query: 134 VVQNFNTSAREV 145
             Q   ++  +V
Sbjct: 114 QGQLVTSAGYQV 125


>gi|154249604|ref|YP_001410429.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153540|gb|ABS60772.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum
           Rt17-B1]
          Length = 261

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 3/192 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           +L    ++      E    A +       F    ++D      +     +    +  +  
Sbjct: 73  KLAATTKIFTQGNLENTGNALDLAITGDGFFQIQLQDGRIAYTRDGQFKLDSQGRVVTAN 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             L     V  +   ++  ++    +     D   +      +        L     N  
Sbjct: 133 GLLLSPAIVVPQNAVSLT-VSPDGIVSVELADGTIQQLGTITLVRFVNPAGLKSIGDNL- 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +L+ N S      +  Q  F  I + Y     V++ +E+  +I   ++Y  +++ I+  
Sbjct: 191 -YLQTNASGEPIEGVGGQDGFGTIMQGYVEKSNVDVVKEMVDMITAMRAYEFNSRSIITA 249

Query: 469 DKMLQTLLEGVK 480
           D+MLQT     +
Sbjct: 250 DQMLQTASNLRR 261



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 56/224 (25%), Gaps = 27/224 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A         +  ++  NI N D   Y +                       +
Sbjct: 1   MINSLYTAATGMWTQQFKMDTVSNNIANVDTAGYKKIKAEFQDLIYSYSKNAGAATAQNS 60

Query: 45  ISPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +P  + V       +  K      L    +A+        F  ++              
Sbjct: 61  TTPTGIYVGHGVKLAATTKIFTQGNLENTGNALDLAITGDGFFQIQ------LQDGRIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + +   +      +  +L   ++     V    +       ++     +++     
Sbjct: 115 TRDGQFKLDSQGRVVTANGLLLSPAIVVPQNAVSLTVSPDGIVSVELADGTIQQLGTITL 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                 + L  + D +  +T +  +  + +  +D     +   +
Sbjct: 175 VRFVNPAGLKSIGDNLYLQTNASGEPIEGVGGQDGFGTIMQGYV 218


>gi|296157454|ref|ZP_06840289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1]
 gi|295892226|gb|EFG72009.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1]
          Length = 262

 Score = 64.7 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 56/179 (31%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          ++  D         +   N Q +   S          
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPGIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                     G   +++        +     +            A+    + E   S + 
Sbjct: 142 IPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQVATFINPAGLDAKGENLFAETASSGAP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL + 
Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + + +      S   +   +            +       +    + +
Sbjct: 121 QTNAQGQLVTSSGYQVIPGITIPNNATSLTIGSDGVVSITVAGSTNSQ 168


>gi|68164544|gb|AAY87273.1| predicted flagellar basal body rod protein [uncultured bacterium
           BAC17H8]
          Length = 262

 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +A       L     +   ++E + S +  +          + +    +  VN+
Sbjct: 170 AVGQLQIADFTNRGGLQPIGESF--YVETDTSGAPIVGNPQDAGLGRVIQGALESSNVNV 227

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKML 472
             EL  +I+ +++Y +S+K I   D+ML
Sbjct: 228 VTELVEMIETQRAYEVSSKSITSVDEML 255



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 29/145 (20%), Gaps = 28/145 (19%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51
           MS  +  + A+   N    +   I  N+ N +   + R           V          
Sbjct: 1   MS-TSSMHVAKTGLNAQQTRMQIIANNLANVNTTGFKRDRANFETLLYQVRRVAGDQVTA 59

Query: 52  ---------VVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                    V T               L    +++        F  +             
Sbjct: 60  EANLTSSFSVGTGARIVNTQKAHTQGSLITTDNSLDLALEGGGFFQVL------LPDGRV 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILG 124
                     + E      S  +L 
Sbjct: 114 GYTRNGAFSTNSEGVLTTSSGYVLQ 138


>gi|148256818|ref|YP_001241403.1| putative flagellar hook protein flgE [Bradyrhizobium sp. BTAi1]
 gi|146408991|gb|ABQ37497.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. BTAi1]
          Length = 601

 Score = 64.7 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/418 (9%), Positives = 100/418 (23%), Gaps = 5/418 (1%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L A                     +       +  +  +    +    S   + D 
Sbjct: 189 ATGTLVAAGGLNSADLSNVPLPVGTNFYADSTVTGGTAVNKNAANITTSTLLSGAAATDS 248

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +           +            + + A         ++   L+++  V       TA
Sbjct: 249 ITTNFTAGDTITLTGSAGDVVTFTFVASGASGTQINVGDSVGTLLAKIAAVTGVQPTITA 308

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K   H    +   L    +    +        +       G  +   +    N      
Sbjct: 309 GKITLHSGSGENWSLSSASAGFTALGFTSPVALNRTASAGTGIVIGNDLTNFNNETISGG 368

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                 S    ++  +      S+      K +  +                 V      
Sbjct: 369 AVTAYNSAGTPVNVQLRWGKVDSSTLGTGHKDIWNLFYQTNSSATGSTVAWQNVGTNFTF 428

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D    +            +             +  +     +  S   +  + +    
Sbjct: 429 ASDGSLTSPTTSSISIPNIVVDGTTLGTVSLNISSGALTQYASTIGSATINNITQNGFAA 488

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             ++++A     I     S  +      V   + N T    A +   +   ++S    + 
Sbjct: 489 GQLQSVAVNNSGIVTGTFSNGQTINLAQVTLSHFNGTNYLKALDGGAYEATDQSGQAIIG 548

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    IS         ++ +E + LI  +Q+Y+ + K+I   + M+Q LL  ++
Sbjct: 549 AS-----GKISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR 601



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/446 (8%), Positives = 89/446 (19%), Gaps = 22/446 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVT 54
           M +    N + +  +  S    +I  NI NA    Y    T          +P       
Sbjct: 1   MGIFDAMNTSVSGLSAQSFALQNISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108
             +  K        +   S A         F  +++  S  D+       +        +
Sbjct: 61  VTAFAKATITTQGTVSTSSVATNMAINGDGFFNVQKASSVVDNVPVFTGVTNYTRRGDFQ 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +      N +   L    +D           +            +     +        
Sbjct: 121 LNANGNLINGAGYYLMGVAVDPKTGNATGNVPT----------VLQFANNFVPAQATTAI 170

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +            AS + A   L     L       + +        D  V         
Sbjct: 171 QYAANLPTQPKTGASGNAATGTLVAAGGLNSADLSNVPLPVGTNFYADSTVTGGTAVNKN 230

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                        + T +  +N    D + ++ + G  V    + +        V     
Sbjct: 231 AANITTSTLLSGAAATDSITTNFTAGDTITLTGSAGDVVTFTFVASGASGTQINVGDSVG 290

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L      + G             +  G   +              S             
Sbjct: 291 TLLAKIAAVTGVQPTITAGKITLHSGSGENWSLSSASAGFTALGFTSPVALNRTASAGTG 350

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             + +  +       +   +  Y               +     G         + + + 
Sbjct: 351 IVIGNDLTNFNNETISGGAVTAYNSAGTPVNVQLRWGKVDSSTLGTGHKDIWNLFYQTNS 410

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434
                  +  +     +      ++ 
Sbjct: 411 SATGSTVAWQNVGTNFTFASDGSLTS 436


>gi|209521591|ref|ZP_03270289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160]
 gi|209497974|gb|EDZ98131.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 2/181 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D      +  S       Q  ++  +       
Sbjct: 82  TQGNLQQTGNSKDVAINGAGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++   +     I     S  +      +A       L     N     E   S 
Sbjct: 142 IPTNATSLTIGSDGSVSITVAGSSNTQQLGTMQLATFINPAGLDAKGENLFA--ETASSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL +
Sbjct: 200 APNVSQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQ 259

Query: 478 G 478
            
Sbjct: 260 M 260



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/216 (4%), Positives = 39/216 (18%), Gaps = 15/216 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +                          +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGAGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           + + +      S   +   +            +       +   ++ +    +       
Sbjct: 121 QTNAQGQLVTSSGYQVIPAITIPTNATSLTIGSDGSVSITVAGSSNTQQLGTMQLATFIN 180

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISE 203
                      F   +   A +           +++
Sbjct: 181 PAGLDAKGENLFAETASSGAPNVSQPGLNGAGTLNQ 216


>gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040055|gb|ACT56851.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 3/192 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q+  +  V             +   V   +      D      +  S  I    Q  +  
Sbjct: 74  QISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTAD 133

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
                 G V  +    +K       L     +S  +      +A       L     N +
Sbjct: 134 GNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLL 193

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                + S    +     + F H+ + Y     V+  +E+S +I  +++Y +++K+I   
Sbjct: 194 AR--TSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAA 251

Query: 469 DKMLQTLLEGVK 480
           D+M  +L+  ++
Sbjct: 252 DEM-SSLITKMR 262



 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/243 (6%), Positives = 50/243 (20%), Gaps = 37/243 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44
            F  A    +        I  NI N +   Y R                           
Sbjct: 3   AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAV 62

Query: 45  -----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V + + R          +    + +    + + +  ++            
Sbjct: 63  VPEGISIGSGVQISSVR---NVYTQGEVVHTGNNLDLALVGRGWFQVE------TPDKTV 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                       +        + L   ++   E      + S + +     ++D +   +
Sbjct: 114 MYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQ 173

Query: 160 ISNLRRF--LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
           +             + ++ +   + S        D       K   +   +         
Sbjct: 174 LLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISE 233

Query: 218 VVY 220
           ++ 
Sbjct: 234 MIS 236


>gi|170694394|ref|ZP_02885548.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M]
 gi|170140817|gb|EDT08991.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 56/179 (31%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          ++  D         +   N Q +   S          
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                     G   +++        +     +            A+    + E   S + 
Sbjct: 142 VPTNATSLTIGSDGVVSITVAGSTNSQQLGSMQIATFINPAGLDAKGENLFAETASSGAP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL + 
Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + + +      S   +   +            +       +    + +
Sbjct: 121 QTNAQGQLVTSSGYQVIPAITVPTNATSLTIGSDGVVSITVAGSTNSQ 168


>gi|1086561|gb|AAB68968.1| FlgG [Agrobacterium tumefaciens]
 gi|2459714|gb|AAB71790.1| FlgG [Agrobacterium tumefaciens]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 57/215 (26%), Gaps = 8/215 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                   +++ +    +  +      +    +               + N   + I   
Sbjct: 41  TDLLYQTERMQGVPNRANQAIVPEGANIGLGVQTSAVRNIHTQGNLIETGNKLDVAIIGQ 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D       +          ++ + +   G      +    +             + 
Sbjct: 101 GWFPDRGRRWFDALQRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTAR 160

Query: 383 ------NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                         +A       L     N         S +  + +     + ++ +SY
Sbjct: 161 IGNAADFTQLGQLTIANFANEAGLKPLGDNLFSQ--TPASGAPVVGVPDDPSYGYVKQSY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 219 LEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 10/41 (24%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A    +        I  NI N +   Y R     T  
Sbjct: 3  ALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDL 43


>gi|149912834|ref|ZP_01901368.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b]
 gi|149813240|gb|EDM73066.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b]
          Length = 261

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 8/205 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +   D  V     QL    R    S          +     L I              
Sbjct: 52  GTVNASDGTVLPTGVQLGLGVRPAAVSIHLAQGSLSATNGDLDLAIDGNGYLEVTLPSGQ 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF------NKNFI 387
            + T     +  ++   +   G      +    ++            ++       +   
Sbjct: 112 SAYTRDGALKRSADGLIVTSDGFSLVPEITIPADVRSISINAAGEVFAYFAETTEAQQIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +AG +    L     N   +LE   S    +    Q     + + Y     V+   E
Sbjct: 172 EITLAGFSNPKGLEAAGNNL--FLETEASGPSLVSTPGQDGLGTLRQGYLEDSSVDPVRE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKML 472
           ++ LI+ ++ Y ++ K+I   D+ML
Sbjct: 230 VTELIEAQRGYELNAKVISAADQML 254



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 54/247 (21%), Gaps = 30/247 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A         +  +I  N+ N     Y  R    +                     
Sbjct: 3   ALKIAATGMTAQQLRVETISNNLANMSTTGYNTRRAEFSDLHYQQMARPGTVNASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         + ++    L A +  +        +  +            S    
Sbjct: 63  PTGVQLGLGVRPAAVSIHLAQGSLSATNGDLDLAIDGNGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ--KIRADADKEIELEIS 161
              L+ S +          L   +   A+    + N +           +A +  E+ ++
Sbjct: 117 DGALKRSADGLIVTSDGFSLVPEITIPADVRSISINAAGEVFAYFAETTEAQQIGEITLA 176

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                       N+      AS         Q  +   +   +   S         ++  
Sbjct: 177 GFSNPKGLEAAGNNLFLETEASGPSLVSTPGQDGLGTLRQGYLEDSSVDPVREVTELIEA 236

Query: 222 SDGTTLF 228
             G  L 
Sbjct: 237 QRGYELN 243


>gi|116250482|ref|YP_766320.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255130|emb|CAK06204.1| flgG [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/243 (6%), Positives = 44/243 (18%), Gaps = 38/243 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   + R     +                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    + +    + + F  ++           + 
Sbjct: 63  PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    + +     +              + E  +      + ++       +    
Sbjct: 114 YSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGSTELTISRSGQVSAKLPGATEATELGQL 173

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                +     +    N   +   AS        D+      K   +   +         
Sbjct: 174 TLADFVNEAGLQPLGDNL-FQETPASGEAVIGNPDEEGFAYMKQGYLESSNVDPVKEITE 232

Query: 218 VVY 220
           ++ 
Sbjct: 233 LIS 235



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 4/169 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          I+  D       +     N Q +       +          +
Sbjct: 87  TQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGS 146

Query: 365 VKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        ++                +A       L     N   + E   S    + 
Sbjct: 147 TELTISRSGQVSAKLPGATEATELGQLTLADFVNEAGLQPLGDNL--FQETPASGEAVIG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253


>gi|260768780|ref|ZP_05877714.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972]
 gi|260616810|gb|EEX41995.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972]
 gi|315180483|gb|ADT87397.1| hypothetical flagellar basal-body rod protein [Vibrio furnissii
           NCTC 11218]
          Length = 261

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 47/185 (25%), Gaps = 2/185 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V             +   V   F      + +    +     +  +    +   +L 
Sbjct: 77  TEKVFTQGNINNTSQQFDLAIVGDGFFQIEGPEGEVLYTRNGQFHLNADGAIVNTQGYLL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                       V                  +      +        L     N +   E
Sbjct: 137 QPEINVPDNATLVTITEDGQVSAVVSGQVEPEQLGEITLVKFMNPSGLTAKGANLLA--E 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S      +        I +    T  V + EE+  +I  +++Y +S K++   D+ML
Sbjct: 195 TEASGEAMELVAGTDGAGVIKQGALETSNVQVVEEMVDMISTQRAYEMSAKMVSAADQML 254

Query: 473 QTLLE 477
           Q +  
Sbjct: 255 QYIAN 259



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/152 (6%), Positives = 30/152 (19%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MHNALMISKTGMAAQDAKMTAISNNLANVNTVGFKRDRVVFEDLFYSVEKQAGTGTNDLN 60

Query: 47  --PENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V +                 ++  S       +   F  ++              
Sbjct: 61  IHPTGVQLGNGVRVAGTEKVFTQGNINNTSQQFDLAIVGDGFFQIE------GPEGEVLY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
               +   + +    N    +L   +      
Sbjct: 115 TRNGQFHLNADGAIVNTQGYLLQPEINVPDNA 146


>gi|288962678|ref|YP_003452972.1| flagellar basal-body rod protein [Azospirillum sp. B510]
 gi|288914944|dbj|BAI76428.1| flagellar basal-body rod protein [Azospirillum sp. B510]
          Length = 261

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 4/183 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +           +          +     +     + +  ++P+     +        
Sbjct: 80  INTTGNLTSTGNELDLAIEGRGYFNVTQPGGETVYTRAGSFKLSPEGTIVTADGFTVAPG 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG--INTNVTLLEYARNSIGWLEKNR 415
                   + +      +  Y D   +      +A         L     N   +     
Sbjct: 140 ITVPQGTREVVINRSGEVLAYVDGKTQPVNQGQLAMTVFVNESGLEALGDNL--FRATPA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S      +  Q  F  I + Y  +  VN+ +E++ LI  +++Y ++ K+I   D+M  T+
Sbjct: 198 SGEPQEGLAGQAGFGTIRQKYLESSNVNVVQEITELISAQRAYEMNAKVIEAGDQMASTM 257

Query: 476 LEG 478
              
Sbjct: 258 TNM 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 34/196 (17%), Gaps = 37/196 (18%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------------- 45
            + A             I  NI N +   Y R                            
Sbjct: 4   LSIASTGMMAQQLNVEVISNNIANINTTAYKRSRAEFQDLMYQAEKRQGSQSTDSGTIVP 63

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                   V   +    N       L +  + +      + +  + +          +  
Sbjct: 64  TGVEVGLGVRPTSVNRIN---TTGNLTSTGNELDLAIEGRGYFNVTQ------PGGETVY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 + S E          +           E V+         V       ++    
Sbjct: 115 TRAGSFKLSPEGTIVTADGFTVAPGITVPQGTREVVINRSGEVLAYVDGKTQPVNQGQLA 174

Query: 159 EISNLRRFLSELTVVN 174
               +     E    N
Sbjct: 175 MTVFVNESGLEALGDN 190


>gi|187925759|ref|YP_001897401.1| flagellar basal body rod protein FlgG [Burkholderia phytofirmans
           PsJN]
 gi|187716953|gb|ACD18177.1| flagellar basal-body rod protein FlgG [Burkholderia phytofirmans
           PsJN]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 56/179 (31%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          ++  D         +   N Q +   S          
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                     G   +++        +     +            A+    + E   S + 
Sbjct: 142 IPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQIATFINPAGLDAKGENLFAETASSGAP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL + 
Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + + +      S   +   +            +       +    + +
Sbjct: 121 QTNAQGQLVTSSGYQVIPAITIPNNATSLTIGSDGVVSITVAGSTNSQ 168


>gi|91785632|ref|YP_560838.1| flagellar basal body rod protein FlgG [Burkholderia xenovorans
           LB400]
 gi|91689586|gb|ABE32786.1| flgG; flagellar basal-body rod protein [Burkholderia xenovorans
           LB400]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 56/179 (31%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          ++  D         +   N Q +   S          
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNAQGQLVTSSGYQVIPAIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                     G   +++        +     +            A+    + E   S + 
Sbjct: 142 IPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQIATFINPAGLDAKGENLFAETASSGAP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL + 
Sbjct: 202 NVAQPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/168 (4%), Positives = 31/168 (18%), Gaps = 15/168 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
           + + +      S   +   +            +       +    + +
Sbjct: 121 QTNAQGQLVTSSGYQVIPAITIPNNATSLTIGSDGVVSITVAGSTNSQ 168


>gi|125975104|ref|YP_001039014.1| protein of unknown function DUF1078-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|256003242|ref|ZP_05428234.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM
           2360]
 gi|281418478|ref|ZP_06249497.1| fagellar hook-basal body protein [Clostridium thermocellum JW20]
 gi|125715329|gb|ABN53821.1| protein of unknown function DUF1078-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|255992933|gb|EEU03023.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM
           2360]
 gi|281407562|gb|EFB37821.1| fagellar hook-basal body protein [Clostridium thermocellum JW20]
 gi|316939269|gb|ADU73303.1| flagellar hook-basal body protein [Clostridium thermocellum DSM
           1313]
          Length = 266

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%)

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              L                +A + +    +    G           IS T   N    S
Sbjct: 73  MATLKNFQSGNFEKTDNPLDLAIDGDGFFMVLGPRGDIVYTRDGSFKISVTENGNMLTTS 132

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
           +   + D   V      ++  L    D    Y D            G+            
Sbjct: 133 DGYPVLDESGVEIILDIDISKLNVSSDGELSYTDENGVVVPLGQRIGLVKFPNRNGLESI 192

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              +     +    +  +     ++I + Y  +  V + EE+  LI  +++Y I++K I 
Sbjct: 193 GSNFYASTSASGEAVPDEELGKKSNIRQYYLESSNVQVVEEMVKLIVAQRAYEINSKAIQ 252

Query: 467 FTDKMLQTLLEGVK 480
             D+ML       +
Sbjct: 253 SADEMLGIANNLKR 266



 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 52/234 (22%), Gaps = 23/234 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A +           I  N+ N +   Y +                        
Sbjct: 1   MMRALWTAGSGMTAQQLNVDVIANNLSNVNTTAYKKERLEFKDMLYDTLNRAYILDGEGR 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK----EMMSADDHYNNS 99
               +        +  KN          + +        F  +     +++   D     
Sbjct: 61  PVNLQVGYGTVPMATLKNFQSGNFEKTDNPLDLAIDGDGFFMVLGPRGDIVYTRDGSFKI 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                  +  + + Y       +     ID ++  V +    +   +        +    
Sbjct: 121 SVTENGNMLTTSDGYPVLDESGVEIILDIDISKLNVSSDGELSYTDENGVVVPLGQRIGL 180

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
           +    R   E    N       + +    + L ++  + Q   E   +  +   
Sbjct: 181 VKFPNRNGLESIGSNFYASTSASGEAVPDEELGKKSNIRQYYLESSNVQVVEEM 234


>gi|167770195|ref|ZP_02442248.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM
           17241]
 gi|167667517|gb|EDS11647.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM
           17241]
          Length = 273

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 76/280 (27%), Gaps = 8/280 (2%)

Query: 199 QKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
             I+   G+S +V    +M + +++   +     +       +       +N   +    
Sbjct: 1   MNIAFYNGVSGLVAYQQEMDLVSNNVANVNTVGYKPSRASFSDLLYTQMWTNTDALVNAG 60

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
             +       +  +  +       +     +L     V       +     +       F
Sbjct: 61  GDAGAQDTADENGVGGMTDADGIHMQGHGVRLAYSDLVFRQGNLLQTEHPLDMAIKGDGF 120

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
            A    +   +  +  +  I +  +     +        +      +         + + 
Sbjct: 121 FAVERANGTTEYTRNGAFDISIEGKSGYLVTSDGSYVLDASGKRIKLDRGDDDQFDLTNL 180

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
            D        +P           E   +    + K  S +   +         I      
Sbjct: 181 QDEVGVYIFPNPYGLEPNTGGFRETPISGTPTVIKASSRASRPY--------TIVTGMLE 232

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              V+L EE++ +I  ++++  S K++   D++  T+   
Sbjct: 233 QSAVDLSEEMANIIVSQRAFQFSAKMVQTADEIEDTVNNL 272



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 30/129 (23%), Gaps = 15/129 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F    +      Q+   +  N+ N +   Y       +                 +
Sbjct: 1   MNIAFYNGVSGLVAYQQEMDLVSNNVANVNTVGYKPSRASFS---------------DLL 45

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           + ++     + +       + +   E         +        +R +           +
Sbjct: 46  YTQMWTNTDALVNAGGDAGAQDTADENGVGGMTDADGIHMQGHGVRLAYSDLVFRQGNLL 105

Query: 123 LGKTVIDNA 131
             +  +D A
Sbjct: 106 QTEHPLDMA 114


>gi|261856358|ref|YP_003263641.1| flagellar basal-body rod protein FlgG [Halothiobacillus
           neapolitanus c2]
 gi|261836827|gb|ACX96594.1| flagellar basal-body rod protein FlgG [Halothiobacillus
           neapolitanus c2]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 2/184 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +            A +       F      D      +  S ++  N Q  +   + 
Sbjct: 77  ATEKNHTQGNLVTTNNALDLAINGRGFFQVLQPDGSVAYTRDGSFSLDSNGQVVTANGYP 136

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                   +   ++         +     +         +A       L     N   +L
Sbjct: 137 LQPAITVPQGAQSITVGKDGTVSVQLAGQAQPSQVGTIDLADFVNPAGLQPIGDNL--FL 194

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S +            ++ +    +  VN+ EEL  +I+ +++Y +++K I  T  M
Sbjct: 195 ESGSSGAPQTSTPGLNGVGNMQQGMLESSNVNVVEELVSMIETQRAYEMNSKAISATSSM 254

Query: 472 LQTL 475
           LQTL
Sbjct: 255 LQTL 258



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/258 (7%), Positives = 64/258 (24%), Gaps = 22/258 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
               A+   +    + + I  N+ N +   + +   +                      P
Sbjct: 5   ALWIAKTGLDAQQTRMSVISNNLANVNTTGFKQDRAVFEDLIYQNYRQVGAANTQQNEVP 64

Query: 48  ENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHY 103
             + + T     +  KN     L   ++A+      + F  + +   +  +  + S +  
Sbjct: 65  TGLNIGTGVKVVATEKNHTQGNLVTTNNALDLAINGRGFFQVLQPDGSVAYTRDGSFSLD 124

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +    +   Y    +  +          +        A + Q  +       +      
Sbjct: 125 SNGQVVTANGYPLQPAITVPQGAQSITVGKDGTVSVQLAGQAQPSQVGTIDLADFVNPAG 184

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            + + +   +         +     + +      + + S +  +  +V        Y  +
Sbjct: 185 LQPIGDNLFLESGSSGAPQTSTPGLNGVGNMQQGMLESSNVNVVEELVSMIETQRAYEMN 244

Query: 224 GTTLFETVPRDINFEKMN 241
              +  T        +  
Sbjct: 245 SKAISATSSMLQTLNQNT 262


>gi|302383956|ref|YP_003819779.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194584|gb|ADL02156.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 4/177 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDN--KLCQGISETICVNPQYRSNPSFLRDGG 355
           I           + +          I          +  + ++    Q  +   +  +  
Sbjct: 80  ITEQGTPTQTGSDYDVAIDGQGYFQITMPSGEIGYTRAGNFSLSGEGQLVTEDGYAVEPA 139

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
               +   +V         +               +A       L     N +  LE   
Sbjct: 140 ISIPQDAIDVTISKTGQVQVITAGSPEPAIVGQLELATFFNEAGLEAIGDNLL--LETAA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           S         +  F  + + Y+    V+   E+S LI  +++Y +++K+I   D+M+
Sbjct: 198 SGPATTGTPGETGFGQLLQGYTEASNVDAVTEISALIIAQRAYEMNSKVITTADEMM 254



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 26/163 (15%), Gaps = 34/163 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A +           I  NI N +   Y R+                          
Sbjct: 3   ALRTAASGMAAQQLNVEVISNNIANMNTVGYKRQRAEFQDLIYQNVERMGAQSSSQGTVV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +           S        Q +  +              
Sbjct: 63  PTGIQVGLGVKAGSVYRITEQGTPTQ---TGSDYDVAIDGQGYFQI------TMPSGEIG 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                    S E          +   +    + +    + + +
Sbjct: 114 YTRAGNFSLSGEGQLVTEDGYAVEPAISIPQDAIDVTISKTGQ 156


>gi|192289142|ref|YP_001989747.1| flagellar hook protein FlgE [Rhodopseudomonas palustris TIE-1]
 gi|192282891|gb|ACE99271.1| flagellar basal body FlaE domain protein [Rhodopseudomonas
           palustris TIE-1]
          Length = 421

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/407 (10%), Positives = 88/407 (21%), Gaps = 12/407 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52
           MSL    + A +  N  SQ  + I  NI N+D   Y     M +                
Sbjct: 1   MSLTGALSSAISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT           +L A S+A         F  + +          +             
Sbjct: 61  VTVAGRANISQQGLLAATSNATDVAIQGSGFFVVSDQ----TSGGTTSYTRNGAFSIDNA 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y  N    + G     + + V    + +   +    A        + +      ++   
Sbjct: 117 GYLVNSGYYLEGWRTDADGKIVGDASSATLSPINTNVAATSGSATTKTTFAANLPADAAT 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                   T           Q   +    +           ++     T   +       
Sbjct: 177 GATYSSSMTVYDSLGTANSIQVTWIKTASNAWTASFANPTLSSSTSTTTGTTSGSVSLTF 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    + +  + S   + +G   S+        GK   L Q          N    
Sbjct: 237 NSDGSLASTNPSPPTISVSGWTNGAANSTISLDLGTVGKTNGLTQYASGEATPTINVTSI 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            +  L         +  +            I      +             Y        
Sbjct: 297 SSDGLPYGKLSSIAVGDDGTVNATYSNGQTIAIYKIAVATFKDPDGLSVNSYGIYSVTAA 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            G +  +    N        +L +   D+ ++           +  +
Sbjct: 357 SGDASVQTSGSNGAGKIYGSELESSTTDTSSQFASMISAQQAYSAAS 403


>gi|241589578|ref|YP_002979603.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D]
 gi|240868290|gb|ACS65949.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D]
          Length = 261

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 2/173 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            A +       F      D      +  +  I    Q  ++  +L     +  +   ++ 
Sbjct: 91  NATDVAINGNGFFQVQRPDGTLAYTRDGNFQISAQGQLVTSSGYLVQPAMMVPRNATSLM 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +               +A       L     N     E   S   +L +   
Sbjct: 151 IGKDGVVTVTTPGMVNRTQVGAFQLANFVNPAGLRSLGENLYA--ETEASGGANLAVPGG 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                + ++Y  T  VN+ EE+  LI+ +++Y I++K +   D+ML+ + +  
Sbjct: 209 NGLGMLHQNYVETSNVNVVEEMIQLIQTQRAYEINSKAVQTADRMLEKIAQLK 261



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 32/147 (21%), Gaps = 27/147 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     ++        Q   +  N+ N +   + R   +                   T
Sbjct: 1   MIRSLWISKTGMEAQQTQLDVVSNNLANVNTTGFKRSRAVFEDLLYQNAREPGAQSSQQT 60

Query: 45  ISPENVTVVTQRSENKNM---FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + T               L    +A         F  ++              
Sbjct: 61  ALPSGMQIGTGTRIVATSRLHSQGNLSKTGNATDVAINGNGFFQVQ------RPDGTLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVI 128
                 + S +      S  ++   ++
Sbjct: 115 TRDGNFQISAQGQLVTSSGYLVQPAMM 141


>gi|110677663|ref|YP_680670.1| flagellar basal body rod protein FlgG [Roseobacter denitrificans
           OCh 114]
 gi|109453779|gb|ABG29984.1| flagellar basal-body rod protein FlgG [Roseobacter denitrificans
           OCh 114]
          Length = 261

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 367 NLAGYPDLINHYCDSFNKNF-IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++    ++  ++ D+ +        +AG      L     N     E   S +  +    
Sbjct: 150 SINTSGEVFAYFSDATDAELLGQFNLAGFTNAKGLEALGGNLFA--ETEASGAAIVSTPG 207

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +     + + Y  +  V+   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 208 EDGLGTVRQGYLESSSVDAVREITELIEAQRGYEMNAKVISAADQMM 254



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 35/173 (20%), Gaps = 28/173 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N     Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTVNATDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L A    +        F  +            +    
Sbjct: 63  PTGVQLGLGVRPSAVSVQLQQGSLSATGGDLDLAIEGTGFLEV------TLPSGQTAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
              L+   E          +   ++   +    + NTS           D E+
Sbjct: 117 DGGLKRDAEGLIVTSDGYPVEPEIVIPDDARSISINTSGEVFAYFSDATDAEL 169


>gi|157781876|gb|ABV72264.1| FlgE [Azospirillum brasilense]
          Length = 297

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/299 (9%), Positives = 69/299 (23%), Gaps = 17/299 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54
           M +  +FN         ++   +I  NI NA    +   +T  +       +        
Sbjct: 1   MGITTIFNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNG 60

Query: 55  QRSE-NKNMFDKVLHAHSSAIGQQRLLQSFEALKEM--------MSADDHYNNSPTHYIS 105
            R+    +     +               F  ++++         +A    ++       
Sbjct: 61  VRAFERLDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSG 120

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                 E    N +   L    +D A       + S+     +    D       ++L  
Sbjct: 121 DFSPDKEGRLVNGAGKALMGFKLDPASGTGSFGSLSSMTPVSLSGLQDYREASTQASLNL 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            L               +     + +D+           +         +   V+ +   
Sbjct: 181 NLPYDQAPVAGEITTANTTGVVLNMVDKNGADGAMALRFLKTGQAEDGTSTWQVFNAG-- 238

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
            +        N    +  T  S     F     ++     +     +        + + 
Sbjct: 239 VVGADGKPVGNGNVNDPTTWKSLGTLNFARNGTLTGGPTGSPVTLTLNPGGDFSQTTLD 297


>gi|77463650|ref|YP_353154.1| flagellar distal rod protein [Rhodobacter sphaeroides 2.4.1]
 gi|126462482|ref|YP_001043596.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17029]
 gi|221639493|ref|YP_002525755.1| Flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides
           KD131]
 gi|332558506|ref|ZP_08412828.1| FlgG [Rhodobacter sphaeroides WS8N]
 gi|11095160|gb|AAG29749.1|AF205139_1 flagellar distal rod protein [Rhodobacter sphaeroides]
 gi|77388068|gb|ABA79253.1| Flagellar distal rod protein [Rhodobacter sphaeroides 2.4.1]
 gi|126104146|gb|ABN76824.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160274|gb|ACM01254.1| Flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides
           KD131]
 gi|332276218|gb|EGJ21533.1| FlgG [Rhodobacter sphaeroides WS8N]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 8/161 (4%)

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
           +         +    Q    TI     Y   P      G+VS     +       PD   
Sbjct: 108 MPDGRMGYTRNGTFSQNAEGTITTPSGYVVQPEIQIPEGAVSVTISSDGIVSVLMPDETE 167

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                  +      +A       L          +E   S    +    +  F  + +  
Sbjct: 168 A------QEVGQMTLATFANPRGLQPVGETFA--VETGASGEAVIGNPVEPGFGKLVQGS 219

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                VN+ +EL  +I+ +++Y +++K I  +D+M+Q L  
Sbjct: 220 LEASNVNVVQELVDMIETQRAYEVNSKSISASDEMMQYLSN 260



 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 33/164 (20%), Gaps = 34/164 (20%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------------- 43
           MS     + A    N    +   I  N+ N +   + R                      
Sbjct: 1   MS-TNAMHVASTGLNAQQTRMQVISNNLANVNTTGFKRDRANFESLLYQTWKPGGAQTSE 59

Query: 44  -------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                  +     V VV+            L    +A+        F  +          
Sbjct: 60  ATAMTSPSAVGTGVRVVSTEKL---YTQGSLANTDNALDLAIDGPGFFQVL------MPD 110

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
                        + E      S  ++   +      V    ++
Sbjct: 111 GRMGYTRNGTFSQNAEGTITTPSGYVVQPEIQIPEGAVSVTISS 154


>gi|295700205|ref|YP_003608098.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002]
 gi|295439418|gb|ADG18587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002]
          Length = 383

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/371 (5%), Positives = 73/371 (19%), Gaps = 6/371 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +    +  + AS     I  NI NA    + +   + +    N  +    ++       
Sbjct: 2   SYQTGLSGLHAASNDLDVIGNNIANAHTVGFKQGTAVFSDMYANAMLGATNNQIGIGVAT 61

Query: 66  V---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                        Q       +                     + +   +    +    +
Sbjct: 62  SAIVRDFSEGTPTQTGNPLDLDIRGNGFFLLSQNGTPVYSRNGQFQQDSDGNIISSGNGL 121

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                 +    VV            +             +      + T           
Sbjct: 122 PLMGYAEGPNGVVDTSRLVQLTTATVANLPPMPTSAIAWSFNLNAGDDTPKVTPFDPTNN 181

Query: 183 SKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             ++        D    +      ++         +  +       T+        ++ +
Sbjct: 182 QSYNFATTATTYDSEGNQHQISIYLVKDPATPNQWSAYIAPQGSDVTVDNGTGAPSSYTQ 241

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + + T  S         +    +  +     +  A+     +      + +         
Sbjct: 242 IGTLTFDSSGRLTSSSSLSFEMSMTNGSASPQTIAIDLGNTTQYAATTDSVTRYHPDGYA 301

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + +    ++   +        +G   +  ++                N  +       ++
Sbjct: 302 AAAYNGTLSVADDGTITAGYTNGETLVIGQVATATFANPNGLESQSGNLFYATQASGSAQ 361

Query: 360 KFLWNVKNLAG 370
                  N   
Sbjct: 362 IGTPGTFNHGA 372


>gi|260431748|ref|ZP_05785719.1| flagellar basal-body rod protein FlgG [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415576|gb|EEX08835.1| flagellar basal-body rod protein FlgG [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 261

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +      +A  +    L     N   + E   S +  +    +     + + Y   
Sbjct: 164 TAEGQLLGEFTLASFSNAKGLEAIGSNL--FKETEASGAPIVGTPGEDGLGTLRQGYLED 221

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             V+   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 222 SSVDAVREVTELIEAQRGYEMNAKVISAVDQMM 254



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 33/160 (20%), Gaps = 28/160 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVETISNNLANMNTTGYNARRAEFADLHYQQMARAGTVNASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  + +            +    L A  S +      + +  +            S    
Sbjct: 63  PTGIQLGLGVRPAAVTVQLAQGALSATGSDLDIAIEGRGYLEV------TLPNGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
              L+ S E          +   +    +    + N +  
Sbjct: 117 DGSLKRSAEGLIVTSDGFPVVPEITIPDDARSISINAAGE 156


>gi|78044159|ref|YP_359861.1| flagellar hook-basal body rod protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996274|gb|ABB15173.1| flagellar hook-basal body rod protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 244

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/187 (8%), Positives = 38/187 (20%), Gaps = 9/187 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQ 55
           +L     +        +Q  ++  NI N +   Y R D            +     V   
Sbjct: 1   MLRGIYISATGLKAGLKQLDTVANNIANINTVGY-RADITVNSGFEEKILNYAGKEVGKL 59

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                   +  L   S           F  +       +             + + + Y 
Sbjct: 60  EYGVNPDIN-YLDLSSGKYVPTGRNLDFALVGNGFFVVETPAGLRYTRAGDFQVNRDGYL 118

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              +   +         +  + +      +         +    +  +     E    N 
Sbjct: 119 CLPNGSRVLGEKGPIKIDNEELYVEKDGRIYNKERSRYIDRLRVVEPVDPVALEKVGGNF 178

Query: 176 AIKFKTA 182
            +     
Sbjct: 179 FVTAANN 185



 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/66 (9%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                 + +       +   + + Y     V+   E   L++  +    + + +   D++
Sbjct: 176 GNFFVTAANNVRPGNAL---VLQGYLEQSNVDPNREYPALLESLRYLQSNARGLKVQDEL 232

Query: 472 LQTLLE 477
           L   + 
Sbjct: 233 LSKAVN 238


>gi|329888226|ref|ZP_08266824.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC
           11568]
 gi|328846782|gb|EGF96344.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC
           11568]
          Length = 262

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 2/170 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +     +       +    +   +    +  + T+    Q  ++  +  +      +  
Sbjct: 87  NRTGNTYDIAIQGKGYFQITLPSGELAYTRAGNFTVNGEGQLVTDDGYAVEPAIAIPQDA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +V         +     +  +      +A       L     N +  LE   S    + 
Sbjct: 147 LDVSISKSGQVQVTTAGQTEPQVVGQLELATFFNEAGLEAIGDNLL--LETAASGPATVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +V + ++ + Y+    V+   E++ LI  +++Y +++K+I   D+ML
Sbjct: 205 APGEVGYGNLLQHYTEASNVDAVSEITALIVAQRAYEMNSKVITTADEML 254



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/154 (5%), Positives = 23/154 (14%), Gaps = 34/154 (22%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI N +   + R+                          
Sbjct: 3   ALRTAATGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQNVERMGAQSSSQGTVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +       +   +        + +  +              
Sbjct: 63  PTGIQIGSGVKAGSVYRITEQ---GSPNRTGNTYDIAIQGKGYFQI------TLPSGELA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                    + E          +   +    + +
Sbjct: 114 YTRAGNFTVNGEGQLVTDDGYAVEPAIAIPQDAL 147


>gi|302671949|ref|YP_003831909.1| flagellar basal-body rod protein FlgG1 [Butyrivibrio
           proteoclasticus B316]
 gi|302396422|gb|ADL35327.1| flagellar basal-body rod protein FlgG1 [Butyrivibrio
           proteoclasticus B316]
          Length = 276

 Score = 64.3 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 70/250 (28%), Gaps = 2/250 (0%)

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            ++N     +     +S        V ++  G+  P      L     S+   F+     
Sbjct: 27  ANVNTAGYKAQGAQFKSLLYQELQTVTTTANGAPKPVTSQVGLGTRVASINQYFKQGSFL 86

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                       D   G   +           +    L +    T+ +     +    + 
Sbjct: 87  TNDNPAAMAISGDGFFGYLGSDGTSKYYTRNGNFSWALSEAGGTTLVLTTAEGNKVMDIN 146

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                        +   G    I +  D+     +   +               S+ + E
Sbjct: 147 GAEITVDGNRVASRITIGGDGKIYYPDDAGVPQDLGKQIGLWQFPNREGLERIGSVAFQE 206

Query: 413 KNRSDSHDLHMKSQVVF--NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
              S +      +      + I + Y     VN+  E+  LI  +++Y +++  I  TD+
Sbjct: 207 TPASGAAINENTAAAGIKKSEIVQGYLEGSNVNVATEMVNLIVAQRAYEMNSTAIQTTDE 266

Query: 471 MLQTLLEGVK 480
           M+QT     +
Sbjct: 267 MMQTANGLKR 276



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 23/136 (16%), Gaps = 25/136 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N       +I  N+ N +   Y  +                       
Sbjct: 1   MVRSLWSAATGMNAQQTNVDTISNNLANVNTAGYKAQGAQFKSLLYQELQTVTTTANGAP 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
              + +        S N+         + +          F              +    
Sbjct: 61  KPVTSQVGLGTRVASINQYFKQGSFLTNDNPAAMAISGDGFFG-----YLGSDGTSKYYT 115

Query: 103 YISKLRDSLESYSKNL 118
                  +L       
Sbjct: 116 RNGNFSWALSEAGGTT 131


>gi|296531727|ref|ZP_06894555.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC
           49957]
 gi|296267943|gb|EFH13742.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC
           49957]
          Length = 260

 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 56/167 (33%)

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
            GN  ++          DL +       +      Q     +        +     + ++
Sbjct: 89  TGNRYDLALEGRGYFGIDLPDGTVAYTRDGSFKLSQEGQIVTTEGYPIQPAINVPIDARD 148

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           +            +  +      +            A     +LE   S   +  + S  
Sbjct: 149 VTVNQAGEVLVTQANGQQQNAGRLNLFLFPNEAGLEAIGGNKFLETEASGQPNQGLPSDP 208

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            +  + + Y     VN+ +E++ LI  +++Y +++K+I  TD+MLQT
Sbjct: 209 GYARVRQGYLEASNVNVVQEITQLIAAQRAYEMNSKVIEATDQMLQT 255



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/169 (8%), Positives = 28/169 (16%), Gaps = 16/169 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMF 63
             N A             I  NI N     + RR              V +  SE   + 
Sbjct: 3   AMNIAATGMQAQQTNVEVIAHNIANVSTTAFTRRKAEFQDLLYQSGERVGSASSEAGTLL 62

Query: 64  --------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                            +    +              +     D              + 
Sbjct: 63  PVGTQVGLGVRNSAINRITVQGTLNETGNRYDLALEGRGYFGIDLPDGTVAYTRDGSFKL 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           S E          +   +    +      N +   +        +    
Sbjct: 123 SQEGQIVTTEGYPIQPAINVPIDARDVTVNQAGEVLVTQANGQQQNAGR 171


>gi|292492365|ref|YP_003527804.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus
           Nc4]
 gi|291580960|gb|ADE15417.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus
           Nc4]
          Length = 261

 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 2/177 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                  +     +       F    + D      +  +  +  + Q  ++  +  +   
Sbjct: 81  FSQGGIAQTENPLDLAIQGRGFFQILMPDGSLAYTRDGTFQVDADGQLVTSSGYPVEPRI 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +   +V   +     +    D+         +A       L     N   + E   S
Sbjct: 141 TIPEGALSVTVGSDGIVSVLVAGDTAPTQLGNVQLADFINPAGLQPIGNNL--FKETASS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                 +     F  + +       VN+ EEL  +I+ +++Y +++K I  TD+MLQ
Sbjct: 199 GVAQTGIPGLTGFGTLVQGALEGANVNVVEELVNMIETQRAYEMNSKAIAGTDEMLQ 255



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/159 (5%), Positives = 30/159 (18%), Gaps = 27/159 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +      A+   +    + A I  N+ N +   + R   +                    
Sbjct: 1   MNQALWIAKTGLDAQQTRMAVISNNLANVNTTGFKRGRAVFEDLLYQTVRQPGAQSSQNT 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R+           +    + +      + F  +           +   
Sbjct: 61  QLPSGLMLGTGVRTVATEKLFSQGGIAQTENPLDLAIQGRGFFQIL------MPDGSLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
                 +   +      S   +   +      +     +
Sbjct: 115 TRDGTFQVDADGQLVTSSGYPVEPRITIPEGALSVTVGS 153


>gi|39933722|ref|NP_945998.1| flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009]
 gi|39647569|emb|CAE26089.1| possible flagellar hook protein FlgE [Rhodopseudomonas palustris
           CGA009]
          Length = 421

 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/407 (10%), Positives = 89/407 (21%), Gaps = 12/407 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52
           MSL    + A +  N  SQ  + I  NI N+D   Y     M +                
Sbjct: 1   MSLTGALSSAISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT           +L A S+A         F  + +          +             
Sbjct: 61  VTVAGRANISQQGLLAATSNATDVAIQGSGFFVVSDQ----TSGGTTSYTRNGAFSIDNA 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y  N    + G     + + V    + +   +    A        + +      ++   
Sbjct: 117 GYLVNSGYYLEGWRTDADGKIVGDASSATLSPINTNVAATSGSATTKTTFAANLPADAAT 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                   T           Q   +    +           ++     T   +       
Sbjct: 177 GATYSSSMTVYDSLGTANSIQVTWIKTASNAWTASFANPTLSSSTSTTTGTTSGSVSLTF 236

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +       + +  + S   + +G   S+        GK   L Q          N    
Sbjct: 237 NNDGSLASTNPSPPTISVSGWTNGAANSTISLDLGTVGKTNGLTQYASGEATPTINVTSI 296

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            +  L         +  +            I      +             Y        
Sbjct: 297 SSDGLPYGKLSSIAVGDDGTVNATYSNGQTIAIYKIAVATFKDPDGLSVNSYGIYSVTAA 356

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            G +  +    N        +L +   D+ ++           +  +
Sbjct: 357 SGDASVQTSGSNGAGKIYGSELESSTTDTSSQFASMISAQQAYSAAS 403


>gi|169826609|ref|YP_001696767.1| flagellar hook-basal body complex protein [Lysinibacillus
           sphaericus C3-41]
 gi|168991097|gb|ACA38637.1| Flagellar hook-basal body complex protein [Lysinibacillus
           sphaericus C3-41]
          Length = 279

 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 61/215 (28%), Gaps = 2/215 (0%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
                 +  +   +        N+  ++A      +       G +              
Sbjct: 67  FGSGAMLGQIKSNQKQGSLQTTNRDLDLAFTKAKQYFNILMPNGENGTETVYTRQGDFYL 126

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                   +  T    P   +    +    +V    + N   L       +         
Sbjct: 127 SPLNNGTVMLVTAEGYPVANAAGQAITLPDNVQGFSVRNGGILEASYPNGDIIRTDLAVT 186

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
               P    + + + +    N    L   +++     + +      +         VNL 
Sbjct: 187 EFQKPQLMEHVSGSYVGLPDNL-AELGFTQAEVLTELVGANRQQIGMQGGTLEMSNVNLS 245

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +E++ LI+ ++SY  + + +   D+ML  L+ G++
Sbjct: 246 KEMTELIQTQRSYQFNARTVTLADQMLG-LINGIR 279



 Score = 41.2 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 14/44 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A N       +  +I  NI N+    +  ++      
Sbjct: 1  MLRTMMTATNTMGQLQNKLDTISNNIANSSTTGFKAKEATFNEL 44


>gi|39936961|ref|NP_949237.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           CGA009]
 gi|192292789|ref|YP_001993394.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           TIE-1]
 gi|39650818|emb|CAE29341.1| putative flagellar basal-body rod protein flgg (distal rod protein)
           [Rhodopseudomonas palustris CGA009]
 gi|192286538|gb|ACF02919.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris
           TIE-1]
          Length = 262

 Score = 64.3 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 48/181 (26%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +     P   + +          I+  D         +   +   R   +          
Sbjct: 82  TQGTLSPTGNDLDLAVRGEGFFKIQMPDGTFAYTRDGSFTKDNTGRMVTANGNPVQPTIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                          ++          +   +             +    ++E   S + 
Sbjct: 142 VPNGATSITVAANGQVSVTISGSTTPTVIGQIGLTRFINKAGLQPQGDNLFIETPASGTP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              + S      I +       V +  E+S LI  +++Y ++ K++   D+MLQ+     
Sbjct: 202 QDGIASADGLGDIMQKTLEMANVEVVTEISDLISAQRAYEMNAKVVSSADQMLQSTSNMF 261

Query: 480 K 480
           +
Sbjct: 262 R 262



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 41/235 (17%), Gaps = 38/235 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI N     + ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGVDIGGGVKTVGTPRL---MTQGTLSPTGNDLDLAVRGEGFFKIQ------MPDGTFA 113

Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                             + + +              V      +  +            
Sbjct: 114 YTRDGSFTKDNTGRMVTANGNPVQPTITVPNGATSITVAANGQVSVTISGSTTPTVIGQI 173

Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                + +   +    N  I    + +  D     D    ++QK  E+  +  + 
Sbjct: 174 GLTRFINKAGLQPQGDNLFIETPASGTPQDGIASADGLGDIMQKTLEMANVEVVT 228


>gi|115353116|ref|YP_774955.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria AMMD]
 gi|170703098|ref|ZP_02893918.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria
           IOP40-10]
 gi|171321840|ref|ZP_02910741.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria
           MEX-5]
 gi|172061970|ref|YP_001809622.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria
           MC40-6]
 gi|115283104|gb|ABI88621.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria AMMD]
 gi|170131995|gb|EDT00503.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria
           IOP40-10]
 gi|171092878|gb|EDT38130.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria
           MEX-5]
 gi|171994487|gb|ACB65406.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria
           MC40-6]
          Length = 262

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + +       F    + D  N   +  S       Q  ++  +         +  
Sbjct: 87  TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAITVPQNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     S         +A       L     N     E   S + ++ 
Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSGAPNVA 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           + + +      S   +    TV  NA+ +    +      Q   ++A +   L+I+    
Sbjct: 121 QTNAQGQLVTSSGYQILPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189
                    +     T+S      
Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVA 204


>gi|269866427|ref|XP_002652270.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348]
 gi|220062840|gb|EED41785.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348]
          Length = 140

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 32/137 (23%), Gaps = 16/137 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--------- 56
            FN   +    A++Q      NI N     +               + T +         
Sbjct: 2   SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61

Query: 57  -SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            + ++      ++     +        F   K    + +             R   + Y 
Sbjct: 62  AAVSQQFTQGDVNNSGGVLDMAIQGGGFFVQKGSDGSLE------YTRSGAFRADKDGYI 115

Query: 116 KNLSEDILGKTVIDNAE 132
            N +     +    + +
Sbjct: 116 TNNTGTSRLQGYAADDD 132


>gi|304321133|ref|YP_003854776.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis
           HTCC2503]
 gi|303300035|gb|ADM09634.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis
           HTCC2503]
          Length = 251

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF-NKNFIFDPVAGINTNVTLLEYAR 405
           N         ++         ++   ++   + D+   ++     +        L     
Sbjct: 120 NSDGFALADGITIPREARQVTISADGEVFAFFDDAVEGQSIGTITLTSFVNPKGLEAMGG 179

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N   + E   S +       Q     + + Y    GV++  E++ LI+ ++ Y +++K++
Sbjct: 180 NL--YRETTASGTPINGQPGQDGLGLLRQGYLEESGVDVVSEIADLIEAQRGYELNSKVL 237

Query: 466 MFTDKML 472
              D+M 
Sbjct: 238 TAADEMY 244



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 33/170 (19%), Gaps = 28/170 (16%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVT--- 51
                 +   I  NI N     Y  R  +                       P  V    
Sbjct: 1   MAAQQTRVDVIANNIANMSTTAYAARSAVFADLIYRQDVNPGAISSTQGTIVPTGVQLGL 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
            V  ++ + +M    L   ++ +        F  +                   K     
Sbjct: 61  GVQTQAVSMDMRQGALRQTTNDLDIAIEGNGFFEI------TLPNGEPAFSRDGKFEVDP 114

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
           +    N     L   +    E      +             + +    I+
Sbjct: 115 DGLMVNSDGFALADGITIPREARQVTISADGEVFAFFDDAVEGQSIGTIT 164


>gi|315301942|ref|ZP_07872943.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596]
 gi|313629684|gb|EFR97816.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596]
          Length = 342

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 2/135 (1%)

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                 +     +   Y D          VA  +    L++   
Sbjct: 210 GTNQVFSPTSDGKGAATVKDYAITDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGN 269

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
               ++    S      +  Q     IS S      V+L  E   L+  +  +  + K+I
Sbjct: 270 G--EYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVI 327

Query: 466 MFTDKMLQTLLEGVK 480
              D +++ ++  ++
Sbjct: 328 RVADDVMKQIVNLIQ 342


>gi|330818583|ref|YP_004362288.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3]
 gi|327370976|gb|AEA62332.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3]
          Length = 262

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 2/170 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  S       Q  ++  +         +   ++    
Sbjct: 94  DIAIDGSGFFQVLMPDGTTAYTRDGSFHPNNQGQLVTSSGYQVLPAITVPQNAQSLTIGT 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A       L    +N     E   S   ++        
Sbjct: 154 DGVVTVTQPGSTNAVQIGAMQIATFINPEGLQALGQNLFA--ETTSSGVPNVTTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +++ Y  +  VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 212 GSLNQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/175 (6%), Positives = 25/175 (14%), Gaps = 33/175 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGALTQTGNSRDIAIDGSGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
           +          + +      S   +   +            T            +
Sbjct: 112 TAYTRDGSFHPNNQGQLVTSSGYQVLPAITVPQNAQSLTIGTDGVVTVTQPGSTN 166


>gi|90423017|ref|YP_531387.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           BisB18]
 gi|90105031|gb|ABD87068.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18]
          Length = 262

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/181 (9%), Positives = 48/181 (26%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          I+  D         +   +   R   S          
Sbjct: 82  TQGTLSTTGNDLDLAVRGEGFFKIQMPDGTYSYTRDGSFTTDNTGRVVTSNGNPLQPTIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                          ++          +   ++            +    ++E   S   
Sbjct: 142 IPTGASGITIASNGQVSVTVTGSTTPTVLGQISLTRFINKTGLQPQGDNLFIETGASGPP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              + +   +  I +       V +  E+S LI  +++Y ++ K++   D+MLQ+     
Sbjct: 202 QDGIANADGYGDIQQQTLEQANVEVVTEISDLIAAQRAYEMNAKVVSAADQMLQSTSNMF 261

Query: 480 K 480
           +
Sbjct: 262 R 262



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 45/235 (19%), Gaps = 38/235 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI N     + ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQRAAFQDLIYDHVRRVGAQASDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGVDIGGGVKTVGTPRL---MTQGTLSTTGNDLDLAVRGEGFFKIQ------MPDGTYS 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                             + + L  T+            ++ +    +       +  +I
Sbjct: 114 YTRDGSFTTDNTGRVVTSNGNPLQPTITIPTGASGITIASNGQVSVTVTGSTTPTVLGQI 173

Query: 161 S---NLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
           S    + +   +    N  I    +    D     D    + Q+  E   +  + 
Sbjct: 174 SLTRFINKTGLQPQGDNLFIETGASGPPQDGIANADGYGDIQQQTLEQANVEVVT 228


>gi|39936993|ref|NP_949269.1| flagellar hook protein flgE [Rhodopseudomonas palustris CGA009]
 gi|192292821|ref|YP_001993426.1| hypothetical protein Rpal_4455 [Rhodopseudomonas palustris TIE-1]
 gi|39650850|emb|CAE29373.1| probable flagellar hook protein flgE [Rhodopseudomonas palustris
           CGA009]
 gi|192286570|gb|ACF02951.1| protein of unknown function DUF1078 domain protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 598

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/404 (6%), Positives = 93/404 (23%), Gaps = 26/404 (6%)

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
             +    + +                           T A ++  +       ++  + N
Sbjct: 195 RAADFATNPQVLGTTPPPFSDNSKTGLQINNKQGVPITGATKLSGVAGSDSIGVDFAVGN 254

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                        +     A+       +      +  IS     ST+      +    +
Sbjct: 255 TITVNGTAITFTASGGTDDATHIPIDSTIANLLSKIDAISAGGAASTVTSGAVVLHTGVA 314

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
               +        +    +   V          G V   +  + + +          D  
Sbjct: 315 SDLAMTSGAAAFASLGLTSPVNVVRNGGGSVGTGKVTGVDNQTFLDESVSGGSTTAYDGN 374

Query: 283 VPIFQNQLDE-------MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                 Q          +       ++    +  N+      +             Q   
Sbjct: 375 GAPVNVQFRWAKVDSATLGTGHTDVWNLFYQVNPNATGTQTAWQNVNTNFTFASNGQMSP 434

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
               +     +         +++       +      ++  +       +        ++
Sbjct: 435 VIGQITLTGLTVSGVSLGDVTMAFGTGGLTQFSDTNGNVQVNQLQQDGYSAGQLVSVSVS 494

Query: 396 TNVTLLEYARNS----IGWLEKNRSDSHDLHMKSQVVFNHISESY--------------- 436
            +  ++    N     +  +     +  +   ++      I+                  
Sbjct: 495 NDGRVVGAYSNGRNIDLAEVSVATFNGANFLKRTDGGAFEITNESGQPLYGKGGSVSGSS 554

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +   ++ +E + LI  +Q+Y+ + K+I   + M+Q LL  ++
Sbjct: 555 LESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNVMR 598



 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/456 (10%), Positives = 106/456 (23%), Gaps = 17/456 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +      +     + S    +I  NI N+    + R DT             Q + + 
Sbjct: 1   MGIFGALTTSVAGLRSNSYALENISGNIANSQTTAFKRIDTSFLDLIPQAGNNQQLAGSV 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-----------HYNNSPTHYISKLRD 109
               ++ +    ++    +        E                                
Sbjct: 61  TAGSRLTNTTQGSVQSASVSTYMAINGEGFFVVQKPSSFSDNNPIFPGVDNFTRRGDFSL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               Y  N +   L    ID         +    + Q     +    ++           
Sbjct: 121 DKNGYLVNGAGYYLEGVKIDPTTGNPVGGSPGVLKFQNDFLPSQATTKISYRANLASYPL 180

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
            T  + +I      +        Q              + +  NN   V  T        
Sbjct: 181 TTKHDKSIPGSELLRAADFATNPQVLGTTPPPFSDNSKTGLQINNKQGVPITGATKLSGV 240

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS-VVPIFQN 288
                I  +     T+T     I       + +         I  LL   D+       +
Sbjct: 241 AGSDSIGVDFAVGNTITVNGTAITFTASGGTDDATHIPIDSTIANLLSKIDAISAGGAAS 300

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            +   A VL    +    +   +     L +   +  + N      +  +          
Sbjct: 301 TVTSGAVVLHTGVASDLAMTSGAAAFASLGLTSPVNVVRNGGGSVGTGKVTGVDNQTFLD 360

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             +  G + +        N+      ++          +++    +N N T         
Sbjct: 361 ESVSGGSTTAYDGNGAPVNVQFRWAKVDSATLGTGHTDVWNLFYQVNPNAT-----GTQT 415

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
            W   N + +   + +   V   I+ +     GV+L
Sbjct: 416 AWQNVNTNFTFASNGQMSPVIGQITLTGLTVSGVSL 451


>gi|238028847|ref|YP_002913078.1| flagellar basal body rod protein FlgG [Burkholderia glumae BGR1]
 gi|237878041|gb|ACR30374.1| Flagellar basal-body rod protein [Burkholderia glumae BGR1]
          Length = 262

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 58/170 (34%), Gaps = 2/170 (1%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +       F    + D      +  S       Q  ++  +         +   ++   A
Sbjct: 94  DVAINGQGFFQVLMPDGTTAYTRDGSFQANNQGQLVTSAGYQVLPAITVPQNAQSLTIGA 153

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                +     +         +A       L    +N     E   S + ++        
Sbjct: 154 DGVVTVTQPGSTNAVQIGSMQLATFINPEGLNALGQNLFA--ETTSSGAPNVTTPGLNGA 211

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +++ Y  +  VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 212 GSLNQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 31/143 (21%), Gaps = 7/143 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A    N    Q   I  N+ N     +     +             ++  +  
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLY-------QTVRQPG 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +        +  Q        A + + +  +      +  ++                 
Sbjct: 54  ANSTQQTELPSGLQLGTGVQQVATERLYTQGNLQQTGNSRDVAINGQGFFQVLMPDGTTA 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREV 145
             +     A    Q   ++  +V
Sbjct: 114 YTRDGSFQANNQGQLVTSAGYQV 136


>gi|154687758|ref|YP_001422919.1| FlhP [Bacillus amyloliquefaciens FZB42]
 gi|154353609|gb|ABS75688.1| FlhP [Bacillus amyloliquefaciens FZB42]
          Length = 273

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 2/136 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             NP    +G  +          ++    L                +  +N    L    
Sbjct: 140 GGNPILDENGQPIQIDSSLTQLKISKTGTLTASDQAGTRSQTFNLGIVNVNNPQALHAEG 199

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N         S   +L   ++     + +       V++ +E++ LI  ++SY ++++ 
Sbjct: 200 DNLFSVNGAGASAIEELTGANRQAIG-MEQGALEGSNVDMSKEMTGLIVSQRSYQLNSRT 258

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D+ML  L+  V+
Sbjct: 259 ITLGDQMLG-LINSVR 273



 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A    +   QQ  ++  N+ N+D   Y  RD+  +  
Sbjct: 1  MLRSMLTASTALHQLQQQMDTVSSNLSNSDTTGYKARDSRFSEL 44


>gi|107023951|ref|YP_622278.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia AU
           1054]
 gi|105894140|gb|ABF77305.1| Flagellar basal-body rod FlgG [Burkholderia cenocepacia AU 1054]
          Length = 262

 Score = 63.9 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + +       F    + D  N   +  S       Q  ++  +         +  
Sbjct: 87  TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     S         +A       L     N     E   S + ++ 
Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPTGLEAKGENLFA--ETTSSGAPNVS 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAAAGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           + + +      S   +    TV  NA+ +    +      Q   ++A +   L+I+    
Sbjct: 121 QTNAQGQLVTSSGYQVLPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189
                    +     T+S      
Sbjct: 181 PTGLEAKGENLFAETTSSGAPNVS 204


>gi|312115249|ref|YP_004012845.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220378|gb|ADP71746.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 261

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 2/157 (1%)

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                   +  L                 P       S++         +     +    
Sbjct: 102 WFQITGANNETLYTRAGTFSKNASGQLVTPDGYTVIPSITIPTNTTSIQVNTDGTVYVDP 161

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
                       +A    +  L     N   + E   S S  + +     +  + + Y  
Sbjct: 162 GTGVMAQVGQLTIATFVNDAGLEALGNNL--FRETISSGSAQVQVPGSEGYATVQQYYVE 219

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +  V+  +E++ LI  +++Y +++K+I   D+M Q L
Sbjct: 220 SSNVDPVQEITNLISAQRNYEMNSKVIQAADEMFQVL 256



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 28/171 (16%), Gaps = 16/171 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV--------------- 50
             + A             I  NI NA+   + R                           
Sbjct: 3   ALSVAATGMVAQQTNVEVIANNIANANTVAFKRSRAEFADLLYQSERAAGVPNRSDADAI 62

Query: 51  -TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                     + +  + LH   S       L      +         N +          
Sbjct: 63  PEASQIGLGVQPVAIRSLHTQGSLTKTGNSLDLALNGRGWFQITGANNETLYTRAGTFSK 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           +            +  ++           NT              ++    
Sbjct: 123 NASGQLVTPDGYTVIPSITIPTNTTSIQVNTDGTVYVDPGTGVMAQVGQLT 173


>gi|56695100|ref|YP_165447.1| flagellar basal body rod protein FlgG [Ruegeria pomeroyi DSS-3]
 gi|56676837|gb|AAV93503.1| flagellar basal-body rod protein FlgG [Ruegeria pomeroyi DSS-3]
          Length = 261

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +      +AG      L     N   + E   S S       +     + + Y   
Sbjct: 164 AAEGQLLGQVTLAGFTNAKGLEAIGSNL--FKETEASGSPITGNPGEDGLGTLRQGYLED 221

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             V+   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 222 SSVDAVREVTELIEAQRGYEMNAKVISAVDQMM 254



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/178 (8%), Positives = 42/178 (23%), Gaps = 28/178 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVETISNNLANMNTTGYNARRAEFADLHYQQIARAGTVNASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +           ++    L A  + +      + +  +            S    
Sbjct: 63  PTGVQLGLGVRPAAVTVHLEQGALSATGNDLDLAIEGRGYFEV------TLPSGQSAFTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
              L+ S E          +   +   ++    + N +          A+ ++  +++
Sbjct: 117 DGSLKRSAEGLIVTSDGLSVVPEITIPSDARSISINAAGEVYAYFDDAAEGQLLGQVT 174


>gi|34497161|ref|NP_901376.1| flagellar basal body rod protein FlgG [Chromobacterium violaceum
           ATCC 12472]
 gi|34103018|gb|AAQ59381.1| flagellar basal-body rod protein flgG [Chromobacterium violaceum
           ATCC 12472]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A       LL    N   + + + S   +           + +       V + EE+
Sbjct: 173 IQLASFINPAGLLALGDNL--FQKTDASGDANPGDPGNGALGKLKQGSLEGSNVQVVEEM 230

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +I  +++Y ++ K++   D MLQ L + V+
Sbjct: 231 VDMIAAQRTYEMNTKVLSAADNMLQQLGQSVR 262



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/162 (8%), Positives = 40/162 (24%), Gaps = 27/162 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNPALWISKTGIQAQDARLTAIANNLANVNTTGFKRDRMIFEDLFYQVEKQPGSKVDDNN 60

Query: 46  -SPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  V +        +     +  +   + ++    + Q F  +            +  
Sbjct: 61  VSPSGVQMGNGTRLVGSQKVFTEGNITTTNQSLDVAIIGQGFLQV------KMANGETGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
               +L  S +   +      L   +   A+    + + +  
Sbjct: 115 TRAGQLSLSKDGVLQTAQGLPLEPEIRIPADATKISISETGE 156


>gi|254473318|ref|ZP_05086715.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062]
 gi|211957434|gb|EEA92637.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 59/208 (28%), Gaps = 2/208 (0%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
                + + +      +   +  +             +       +      D +    +
Sbjct: 57  GGAAPVPEGIQQGLGVKTAAIRELHSKGPLNHTTNTFDLAIDGQGWFEVVGPDGEALYTR 116

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             +  +       +   +    G         +           +   +   +     + 
Sbjct: 117 AGAFNVNGEGALVTLDGYEVQPGITVPIDAVKITVNESGEVFATYADGNPATSIGQLSLT 176

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
               +  L     N   + E   S + +  +  +     I + Y     V+  +E++ LI
Sbjct: 177 SFVNDAGLRAIGGNL--FRETEASGAPNTGIAGEGPLGVIRQGYLEGANVDPVKEITSLI 234

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             ++ Y +++K+I   D M  T+ +G++
Sbjct: 235 SAQRGYEMNSKVIQAADDMAGTVSKGIR 262



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 24/141 (17%), Gaps = 34/141 (24%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +   +    I  NI N +   +       +                     
Sbjct: 3   ALAIAATGMSAQQKNLEVISNNIANMNTTAFKASRAEFSDLLYQMDRAAGVSNRGGAAPV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  +       L+  ++        Q +  +            + 
Sbjct: 63  PEGIQQGLGVKTAAIRELHSK---GPLNHTTNTFDLAIDGQGWFEVV------GPDGEAL 113

Query: 101 THYISKLRDSLESYSKNLSED 121
                    + E     L   
Sbjct: 114 YTRAGAFNVNGEGALVTLDGY 134


>gi|27380939|ref|NP_772468.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum
           USDA 110]
 gi|27354105|dbj|BAC51093.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA
           110]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 50/183 (27%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +         + +          I   D         T  ++ Q R   +        
Sbjct: 80  SMTQGTLSQTGNDLDLAISGEGFFKILMPDGTFQYTRDGTFQMDNQGRVVTAQGNPVQPT 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                            ++      + + +   +               +  + E   S 
Sbjct: 140 ITIPNNASGLTVNEQGQVSVTLPGSSTSAVQGQLGLTRFINKAGLQPVGNNQFTETPSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  +   +  I++       V++  E+S LI  +++Y ++ K+I   D+M+Q+   
Sbjct: 200 PPQDGTANTEGYGKITQGSLEQANVDVVSEMSDLIAAQRAYEMNAKVISAADQMMQSTTA 259

Query: 478 GVK 480
             +
Sbjct: 260 LFR 262



 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 46/241 (19%), Gaps = 36/241 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  NI N     + ++                          
Sbjct: 3   ALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQASDQGTIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V       +M    L    + +      + F  +              
Sbjct: 63  PVGVDIGGGVKTVGTPR---SMTQGTLSQTGNDLDLAISGEGFFKIL------MPDGTFQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE- 159
                  +   +        + +  T+           N   +    +   +   ++ + 
Sbjct: 114 YTRDGTFQMDNQGRVVTAQGNPVQPTITIPNNASGLTVNEQGQVSVTLPGSSTSAVQGQL 173

Query: 160 -ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            ++          V N+      +S        +           +   +  V +    +
Sbjct: 174 GLTRFINKAGLQPVGNNQFTETPSSGPPQDGTANTEGYGKITQGSLEQANVDVVSEMSDL 233

Query: 219 V 219
           +
Sbjct: 234 I 234


>gi|167585196|ref|ZP_02377584.1| flagellar basal-body rod protein FlgG [Burkholderia ubonensis Bu]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 2/182 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                ++   + +       F    + D  N   +  S       Q  ++  +       
Sbjct: 82  TQGSLQQTGNSKDLAIDGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
             +    +         +     +         +A       L     N     E   S 
Sbjct: 142 VPQNATALTIGKDGVVSVKQAGSNNAVQIGSIQIATFINPAGLEAKGENLFA--ETTSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQ + +
Sbjct: 200 APNVSQPGLNGAGSLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQNVTQ 259

Query: 478 GV 479
             
Sbjct: 260 MK 261



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/157 (7%), Positives = 24/157 (15%), Gaps = 33/157 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A    N    Q   I  N+ N     Y     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGYKGSRAVFEDLLYQTIRQPGANSTQQT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V  V             L    ++         F  +            
Sbjct: 61  ELPSGLQLGTGVQQVATERL---YTQGSLQQTGNSKDLAIDGAGFFQVL------MPDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
           +        + + +      S   +   +        
Sbjct: 112 NAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNATA 148


>gi|83716996|ref|YP_438391.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           E264]
 gi|167614839|ref|ZP_02383474.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           Bt4]
 gi|257141424|ref|ZP_05589686.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis
           E264]
 gi|83650821|gb|ABC34885.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis
           E264]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 2/188 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             ++      +    + +   +   FI   + + +    +    +I       +      
Sbjct: 77  TQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGLLVNAQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +   ++               S         +A       LL    N   ++E
Sbjct: 137 QPEISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFVNPAGLLALGDNL--YME 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +       VF  I +       V + EE+  +I  +++Y ++ K++   D ML
Sbjct: 195 TVASGPPNEGEPGTDVFGKIKQGALEGANVQVVEEMVDMIAAQRTYEMNTKVLSAADNML 254

Query: 473 QTLLEGVK 480
           Q L +  +
Sbjct: 255 QQLSQAAR 262



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 33/143 (23%), Gaps = 27/143 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNQAMWISKTGLQAQDAKLQAIANNLANVNTIGFKRDRVVFEDLFYRIERQPGAQLDQDN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            SP  + + +            D  +     ++    + + F  +            +  
Sbjct: 61  ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVL------MANGETGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILG 124
               +L  + E    N     L 
Sbjct: 115 TRAGQLSINAEGLLVNAQGLPLQ 137


>gi|301168505|emb|CBW28095.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ]
          Length = 261

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 69/205 (33%), Gaps = 9/205 (4%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            +     + V   + +  + ++ +  +  +             +   +     D      
Sbjct: 65  GVQIGSGAKVSGVRKEFTQGSQQITNNPYDLMISGEGFFG-IMMPNNEVRYTRDGSFSVD 123

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            S T+     YR  PSF+   G+ S     +    A   + I          F F    G
Sbjct: 124 ASGTLVNKQGYRVFPSFVFPPGTKSVHIAHDGTVEAYLSNQIEPTILGQIPVFTFINPVG 183

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           + +             +     S     ++        I++    +  V++  E++ LIK
Sbjct: 184 LKSTG--------MNLYTITRSSGQAIQNIAGNANAGTIAQGALESSNVSIMNEMTSLIK 235

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEG 478
            +++Y +++K++   D+MLQT+   
Sbjct: 236 AQRAYEMNSKVMGVADQMLQTVNNI 260



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 28/94 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          +L   N A           ++I  NI N +   Y ++ T                 + + 
Sbjct: 1  MLRALNTAATGMAAQEMNVSTISNNIANVNTTGYKKQRTEIQDLSYQTIQEAGSRSSADT 60

Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
           + V     S      + + F    + ++ + + 
Sbjct: 61 MNNVGVQIGSGAKVSGVRKEFTQGSQQITNNPYD 94


>gi|118588711|ref|ZP_01546119.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614]
 gi|118438697|gb|EAV45330.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614]
          Length = 260

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 60/208 (28%), Gaps = 3/208 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                    +     Q+    ++              +     L I        +     
Sbjct: 52  GTETSDSGTIVPTGIQIGSGVKIAATGRIMSQGSLEQTGKELDLAIRGEGFFQIDMPDGT 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            + T   + +  +N   +   G      +   + +              ++      +  
Sbjct: 112 TAYTRDGSFERDANGQLVTIDGYSVNPGITIPQTVKDVTISNTGVVQGVDQAGNTVQLGQ 171

Query: 394 INTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           I     + +    +IG    LE + S + +        +  + + +     V+   E++ 
Sbjct: 172 IQLARFVNKAGLEAIGDNLYLETDASGAPETSNPGDESYGTVQQYFLEMANVDAVTEIAD 231

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           LI  +++Y +++++I   D+M  T    
Sbjct: 232 LISAQRAYEMNSQIIQAADEMYSTTTNL 259



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/255 (7%), Positives = 52/255 (20%), Gaps = 22/255 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50
             + A             I  N+ N     + ++                   + S   V
Sbjct: 3   ALHIAATGMKAQELNVEVISNNVANMRTTGFKKQRADFQDLLYQNLRRMGTETSDSGTIV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q      +          ++ Q           E     D     +          
Sbjct: 63  PTGIQIGSGVKIAATGRIMSQGSLEQTGKELDLAIRGEGFFQIDMPDGTTAYTRDGSFER 122

Query: 110 SLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
                   +    +    T+    ++V  +     + V +               + +  
Sbjct: 123 DANGQLVTIDGYSVNPGITIPQTVKDVTISNTGVVQGVDQAGNTVQLGQIQLARFVNKAG 182

Query: 168 SELTVVNDAIKFKTASKHDAHDFLD----QRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            E    N  ++   +   +  +  D           +++ +  ++ I    +    Y  +
Sbjct: 183 LEAIGDNLYLETDASGAPETSNPGDESYGTVQQYFLEMANVDAVTEIADLISAQRAYEMN 242

Query: 224 GTTLFETVPRDINFE 238
              +           
Sbjct: 243 SQIIQAADEMYSTTT 257


>gi|225377358|ref|ZP_03754579.1| hypothetical protein ROSEINA2194_03006 [Roseburia inulinivorans DSM
           16841]
 gi|225210783|gb|EEG93137.1| hypothetical protein ROSEINA2194_03006 [Roseburia inulinivorans DSM
           16841]
          Length = 271

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 71/273 (26%), Gaps = 8/273 (2%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
               +         D  +          F+   +   +     I       +  +     
Sbjct: 6   YTAASGMRAQQTNVDNISNNIANVNTTAFKSQKTEFKSLLYQTIQTRTTSANGEEKPIGA 65

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +  +   +    +         DE         +    + G           +    +  
Sbjct: 66  QVGLGTRVASNTTSYTQGALLEDESKSAFAIEGNGFFQVRGADGTTYYTRNGNFNWSIGP 125

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                 +           N   L +  +  K  +     +  Y +   +   +       
Sbjct: 126 TGTTLTNTDGYPVLDSNGNTIVLPNNVNSGKAVVTTDGQVGYYNNAGAYVSMNRT----- 180

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV-FNHISESYSNTVGVNLQEE 447
             ++  N    L +   N +     N S +      +  +  + I + Y     V + +E
Sbjct: 181 IGLSQFNNPAGLEKAGSNLL--RATNASGAALNEATNANLTRSKIHQGYLEGSNVQVADE 238

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  LI  +++Y +++K I  +D ML+      +
Sbjct: 239 MVNLIVAQRAYQLNSKAITTSDDMLEQANNLKR 271



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++     A +          +I  NI N +   +  + T     
Sbjct: 1  MMRALYTAASGMRAQQTNVDNISNNIANVNTTAFKSQKTEFKSL 44


>gi|206558970|ref|YP_002229730.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia
           J2315]
 gi|198035007|emb|CAR50879.1| flagellar basal-body rod protein FlgG (distal rod protein)
           [Burkholderia cenocepacia J2315]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + +       F    + D  N   +  S       Q  ++  +         +  
Sbjct: 87  TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     S         +A       L     N     E   S + ++ 
Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSGAPNVS 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           + + +      S   +    TV  NA+ +    +      Q   ++A +   L+I+    
Sbjct: 121 QTNAQGQLVTSSGYQVLPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189
                    +     T+S      
Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVS 204


>gi|163852464|ref|YP_001640507.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens
           PA1]
 gi|218531220|ref|YP_002422036.1| flagellar basal-body rod protein FlgG [Methylobacterium
           chloromethanicum CM4]
 gi|240139801|ref|YP_002964278.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Methylobacterium extorquens AM1]
 gi|254562216|ref|YP_003069311.1| cell-distal portion of basal-body rod biosynthesis protein
           [Methylobacterium extorquens DM4]
 gi|163664069|gb|ABY31436.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens
           PA1]
 gi|218523523|gb|ACK84108.1| flagellar basal-body rod protein FlgG [Methylobacterium
           chloromethanicum CM4]
 gi|240009775|gb|ACS41001.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Methylobacterium extorquens AM1]
 gi|254269494|emb|CAX25460.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Methylobacterium extorquens DM4]
          Length = 263

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             AR +      +     +            + D      +  S  +    Q  +   +L
Sbjct: 76  STARAMSQGPLAQTEKDYDVAIRGEGLFRVRLPDGRTAYSRDGSFDLDAQGQMVTRDGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            D G        +V   A           +  +      +A     V L     N   ++
Sbjct: 136 LDPGVTVPNTATSVTISATGAVQATMPGQTAPQALGQFQLARFVNKVGLESIGDNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S      +     F ++ + Y     VN   E+S LI  +++Y +++K++   D+M
Sbjct: 194 ETAASGPAITGLPGSEGFGNLQQRYLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQM 253

Query: 472 LQTLLEGVK 480
           L T  +  +
Sbjct: 254 LSTTSQMFR 262



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 46/190 (24%), Gaps = 18/190 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
               A             I  NI N     Y R+                      ++  
Sbjct: 3   ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQ---------------DLLYQN 47

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           +  + SS   Q  +L +  AL          + +       L  + + Y   +  + L +
Sbjct: 48  LRRSGSSTSDQNTMLPAGLALGS---GVKTTSTARAMSQGPLAQTEKDYDVAIRGEGLFR 104

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + +         +   + Q      D  +      +    + +T+        T    
Sbjct: 105 VRLPDGRTAYSRDGSFDLDAQGQMVTRDGYLLDPGVTVPNTATSVTISATGAVQATMPGQ 164

Query: 186 DAHDFLDQRD 195
            A   L Q  
Sbjct: 165 TAPQALGQFQ 174


>gi|116691038|ref|YP_836661.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia
           HI2424]
 gi|170734372|ref|YP_001766319.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia
           MC0-3]
 gi|254246967|ref|ZP_04940288.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184]
 gi|116649127|gb|ABK09768.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia
           HI2424]
 gi|124871743|gb|EAY63459.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184]
 gi|169817614|gb|ACA92197.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia
           MC0-3]
          Length = 262

 Score = 63.9 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 2/177 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + +       F    + D  N   +  S       Q  ++  +         +  
Sbjct: 87  TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQVLPAITVPQNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     S         +A       L     N     E   S + ++ 
Sbjct: 147 QSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFINPTGLEAKGENLFA--ETTSSGAPNVS 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 50.8 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 43/204 (21%), Gaps = 17/204 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           + + +      S   +    TV  NA+ +    +      Q   ++A +   L+I+    
Sbjct: 121 QTNAQGQLVTSSGYQVLPAITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQIATFIN 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189
                    +     T+S      
Sbjct: 181 PTGLEAKGENLFAETTSSGAPNVS 204


>gi|241203106|ref|YP_002974202.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856996|gb|ACS54663.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 262

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/243 (6%), Positives = 43/243 (17%), Gaps = 38/243 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   + R     +                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    + +    + + F  ++           + 
Sbjct: 63  PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    + +     +              + E  +        ++       +    
Sbjct: 114 YSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGSTELTISRSGQVTAKLPGATEATELGQL 173

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                +     +    N   +   AS        D+      K   +   +         
Sbjct: 174 TLADFVNEAGLQPLGDNL-FQETPASGEAVIGNPDEEGFAYMKQGYLESSNVDPVKEITE 232

Query: 218 VVY 220
           ++ 
Sbjct: 233 LIS 235



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 49/169 (28%), Gaps = 4/169 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          I+  D       +     N Q +       +          +
Sbjct: 87  TQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAFNKNDQGQLVTIDGYEVLPGITIPTGS 146

Query: 365 VKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        +                 +A       L     N   + E   S    + 
Sbjct: 147 TELTISRSGQVTAKLPGATEATELGQLTLADFVNEAGLQPLGDNL--FQETPASGEAVIG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253


>gi|222084865|ref|YP_002543394.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
 gi|221722313|gb|ACM25469.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
          Length = 262

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 2/185 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q   +  + I     +     +   V   +    + D      +  S       Q  +  
Sbjct: 73  QTTAVRNIQIQGELSQTSNDLDVALVGRGWFQIQMPDGTTAYTRAGSFNKSDTGQMVTPD 132

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             +   G        NV               +         +A       L     N  
Sbjct: 133 GNVLQPGITIPSNASNVVINQSGQVSATIGTATTPTVLGQLQIANFVNEAGLQPMGSNLF 192

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                  S    +   ++  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   
Sbjct: 193 TQ--TPASGDPVVSDPNENGFAYMKQGYLESSNVDPVKEITDLITAQRAYEMNSKVITTA 250

Query: 469 DKMLQ 473
           D M Q
Sbjct: 251 DDMAQ 255



 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 36/184 (19%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   Y R     +                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGYKRSRAEFSDLLYQTERAKGIANRPNQAVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+         L   S+ +    + + +  ++           + 
Sbjct: 63  PEGANIGLGVQTTAVRNIQ---IQGELSQTSNDLDVALVGRGWFQIQ------MPDGTTA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    S          ++L   +   +       N S +    I       +  ++
Sbjct: 114 YTRAGSFNKSDTGQMVTPDGNVLQPGITIPSNASNVVINQSGQVSATIGTATTPTVLGQL 173

Query: 161 SNLR 164
               
Sbjct: 174 QIAN 177


>gi|119953092|ref|YP_945301.1| flagellar basal body rod protein FlgC [Borrelia turicatae 91E135]
 gi|119861863|gb|AAX17631.1| flagellar basal-body rod protein FlgC [Borrelia turicatae 91E135]
          Length = 152

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 25/82 (30%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT---------- 44
          M L +  N A         +   I  NI N +        +Y R+  + +          
Sbjct: 1  MGLFSSINTAATGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRIVFSPRVVSPYWKG 60

Query: 45 ---------ISPENVTVVTQRS 57
                      + V V     
Sbjct: 61 PFVPDYLDNGIGQGVRVAGIER 82



 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN  EE+  +I   ++Y  ++ +I  +  + ++ L  ++
Sbjct: 106 GYVEFPNVNAVEEMVDMISASRAYEANSTVINSSKAIFRSALSILQ 151


>gi|15887898|ref|NP_353579.1| flagellar basal body rod protein FlgG [Agrobacterium tumefaciens
           str. C58]
 gi|20141428|sp|Q44338|FLGG_AGRT5 RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|15155490|gb|AAK86364.1| flagellar basal-body rod protein [Agrobacterium tumefaciens str.
           C58]
          Length = 262

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 52/242 (21%), Gaps = 36/242 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   Y R     T                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ +       L    + +    + Q +  ++          ++ 
Sbjct: 63  PEGANIGLGVQTSAVRNIH---TQGNLIETGNKLDVAIIGQGWFQIE------AADGSTL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     +    +   +    +        + +   +I   AD     ++
Sbjct: 114 YSRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTARIGNAADFTQLGQL 173

Query: 161 SNLR--RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           +            + ++      AS        D       K S + G +         +
Sbjct: 174 TIANFANEAGLKPLGDNLFSQTPASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDL 233

Query: 219 VY 220
           + 
Sbjct: 234 IT 235



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 2/118 (1%)

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     ++               +         +A       L     N       
Sbjct: 138 PNINIPTDAQDITITRTGQVTARIGNAADFTQLGQLTIANFANEAGLKPLGDNLFSQ--T 195

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             S +  + +     + ++ +SY     V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 196 PASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253


>gi|294084416|ref|YP_003551174.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663989|gb|ADE39090.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 262

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 61/199 (30%), Gaps = 2/199 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
           A   +  +       ++    +++      +   + +       F    + D      + 
Sbjct: 59  ADTDLTSAFAVGTGARIVNTQKMMSQGSMIQTDNSLDLAIEGSGFFQVLLPDGQIGYTRN 118

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            S +        +   ++             +         +    +   +N     +A 
Sbjct: 119 GSFSTNAEGTLTTPSGYVLQPEIQIPGNASQINISGDGIVSVIVAGEIEPQNVGQMTIAD 178

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
            N    L     +    +E   S +  +    +  F  + +       VN+ +EL  +I+
Sbjct: 179 FNNRRGLQPIGESFS--IETAASGAAIIANPQEQGFGKLVQGSLEASNVNVVQELVNMIE 236

Query: 454 VEQSYNISNKLIMFTDKML 472
            +++Y +S+K I   D+ML
Sbjct: 237 TQRAYEVSSKSITSVDEML 255



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 31/154 (20%), Gaps = 28/154 (18%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51
           MS  +  + A+   N    +   I  N+ N +   + R           V          
Sbjct: 1   MS-TSSMHVAKTGLNAQQTRMQVIANNLANVNTTGFKRDRANFETLLYQVRRSAGEETSA 59

Query: 52  ---------VVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                    V T          M    +    +++        F  +             
Sbjct: 60  DTDLTSAFAVGTGARIVNTQKMMSQGSMIQTDNSLDLAIEGSGFFQVL------LPDGQI 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                     + E      S  +L   +      
Sbjct: 114 GYTRNGSFSTNAEGTLTTPSGYVLQPEIQIPGNA 147


>gi|171321213|ref|ZP_02910183.1| protein of unknown function DUF1078 domain protein [Burkholderia
           ambifaria MEX-5]
 gi|171093523|gb|EDT38693.1| protein of unknown function DUF1078 domain protein [Burkholderia
           ambifaria MEX-5]
          Length = 258

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 55/226 (24%), Gaps = 27/226 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           +  +F               +  +NI N +   + R     +    +  +   R EN   
Sbjct: 1   MNNLFYIGATGLAAQQTAVDTTAQNIANLNTPAFKRGAVTFSTLLSSGALPGARQENAAP 60

Query: 62  ----------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                                L             + F  L      D    N       
Sbjct: 61  AGIAGGAGVTASARPVFSPGTLRQTDDTWDLAIRSEGFVEL------DAPDGNIMLWRGG 114

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD----KEIELEIS 161
           +LR   + Y +  +   L   +    +          + +  I   A       IE+  +
Sbjct: 115 RLRVGDDGYLRASNGVPLKAAISVPRDAERLEIAPDGKVLAMIPNQAAPLEVGRIEIAQA 174

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
              R L  L      I  + A+   +    D    L Q  SE   +
Sbjct: 175 TDPRALQPLGDGTYRIADEGAAVIRSRPGEDNAGTLAQGFSEASNV 220



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +   +       +     +++ +S    V L +EL+ L+  +++Y  S KL+   D+++
Sbjct: 191 ADEGAAVIRSRPGEDNAGTLAQGFSEASNVALADELAGLMLYQRAYAASAKLVQAGDELM 250

Query: 473 QTLLEGVK 480
                  +
Sbjct: 251 AIANGLKR 258


>gi|224436455|ref|ZP_03657469.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818]
 gi|313142967|ref|ZP_07805160.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818]
 gi|313127998|gb|EFR45615.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818]
          Length = 745

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/360 (10%), Positives = 96/360 (26%), Gaps = 18/360 (5%)

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
             ++          +   KI    +      ++                 +   S +   
Sbjct: 396 QWSDNTTYLEGDVVQSDDKIYRRINAAGNNPLNEGNWEELGSVESALPPSYTKGSTYQVD 455

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
           D +     L +K+ +       + N     +      + F  +P        N       
Sbjct: 456 DVVSYEGKLYRKMVDSGSSDPKLDNIGWQEIRGDSFFSEFIQMPSYQT----NVEIYDES 511

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
                +         G+   +  IK   ++R +V    Q+    ++   +    E D   
Sbjct: 512 GKKFLVQSHYFMVQSGNPESEPPIKEKWEVRSAVFD--QHGEIMISPDYVTHNIEFDSDG 569

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
             S     L   D     +    + +  +  V      +   L        +       +
Sbjct: 570 KPSAEPIELNFGDKSLTYNIAGAKDMQSSNFVYR----DSGILGKDQDGRAEGHLRDVRI 625

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS-------IGWLEKNRSDSHDL 421
                +   + +   +      +A    +  L +   N        +       S    L
Sbjct: 626 DKDGIIFLAFDNGAYEPMGRVGIAAFVNDQGLRKVGGNLFEMTEMVVNGDASTISGKPIL 685

Query: 422 HMKSQVV-FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +   + F  +   +  T  V++   L+ LI +++ Y+++ K     D +++  L   +
Sbjct: 686 GWEGLNLKFGSVLYKHLETSNVDVGNALTELIVMQRGYSMNAKAFTTGDDLVKEALNLKR 745



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 54/211 (25%), Gaps = 29/211 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    + +          SI  NI N +   Y R             + +  +++   
Sbjct: 1   MNSTLINSYSGIKTHQFGLDSISNNIANVNTIGYRRNIPQFESLFS-TNMDSLNADSPIN 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMS------------------------ADDHYNN 98
            D    A  S+        S++A     +                          +    
Sbjct: 60  NDMNYGATKSSNAISTRSGSYKASDGEFNVAYEGKGWFVVGEQKSGSFEIKDDGYEKKQK 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            E Y  N S   +    +   ++       ++ + ++I   A    +L
Sbjct: 120 NYFTRDGSFLRDGEGYIVNTSGYYMYGVDLGKIKD----GIYTSSKSEEIDFAALSSGKL 175

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           +   + + L    V+   +        + + 
Sbjct: 176 QPMQVPQNLYYHPVLTTKLDVSANLNKNENA 206


>gi|116626490|ref|YP_828646.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229652|gb|ABJ88361.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 263

 Score = 63.5 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS-QVVFNHISESYS 437
             S  +      +A       L     N   +L  + S    +     Q     + + Y+
Sbjct: 163 NQSAAQQAGQIQLANFQNPAGLNSVGGNL--YLPTDASGDATVGTPGGQEGLGSVLQGYT 220

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               V++ EE   LI  ++ Y  ++K++   D M Q +    +
Sbjct: 221 EQSNVSVVEEFINLIVAQRGYEANSKVVKAADDMYQQVNNLTR 263



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 37/183 (20%), Gaps = 27/183 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A +          +I  N+ NA+   Y  R                      T
Sbjct: 1   MIRALYSAASGMTAQQLNVDNIAHNLANANTAGYKMRRAQFQDLIYQTVVQPGSASGQQT 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + V      + N             + +      + F  +++             
Sbjct: 61  TVPTGLQVGLGTRTSSNEILFTQGSFAQTDNPLDLVIQGKGFFQVRQ------PSGQLAY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                     +        + L   +   A     +          +   +  +   +I 
Sbjct: 115 TRSGAFHCDRDGNIVTQDGNTLEPQITVPAAAQQISIAQDGTVSYTLPNQSAAQQAGQIQ 174

Query: 162 NLR 164
              
Sbjct: 175 LAN 177


>gi|134297196|ref|YP_001120931.1| flagellar basal body rod protein FlgG [Burkholderia vietnamiensis
           G4]
 gi|134140353|gb|ABO56096.1| flagellar basal-body rod protein FlgG [Burkholderia vietnamiensis
           G4]
          Length = 262

 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 2/177 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
            +   + +       F    + D  N   +  S       Q  ++  +         +  
Sbjct: 87  TQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVTSSGYQILPAITVPQNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     +         +A       L     N     E   S + ++ 
Sbjct: 147 QSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFINPAGLEAKGENLFA--ETTSSGAPNVS 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                    +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQT+ +  
Sbjct: 205 QPGLNGAGVLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 42/204 (20%), Gaps = 17/204 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           +      A    N    Q   I  N+ N     +     +                  Q 
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 57  ---------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           + + +      S   +    TV  NA+ +    +      Q    +A +   L+I+    
Sbjct: 121 QTNAQGQLVTSSGYQILPAITVPQNAQSLTIGKDGVVSVTQPGSNNAVQIGSLQIATFIN 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHD 189
                    +     T+S      
Sbjct: 181 PAGLEAKGENLFAETTSSGAPNVS 204


>gi|254511992|ref|ZP_05124059.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium
           KLH11]
 gi|221535703|gb|EEE38691.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium
           KLH11]
          Length = 261

 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +      +A  +    L     N   + E   S +  +    +     + + Y   
Sbjct: 164 TAEGQLLGEFTMASFSNAKGLEAVGSNL--FKETEASGAPVVGRPGEDGLGTLRQGYLED 221

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             V+   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 222 SSVDAVREVTELIEAQRGYEMNAKVISAVDQMM 254



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 32/160 (20%), Gaps = 28/160 (17%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A         +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMTAQQMRVETISNNLANMNTTGYNTRRAEFADLHYQQVARAGAVSASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  + +            +    L A  S +      + +  +            S    
Sbjct: 63  PTGIQLGLGVRPAAVTVQLEQGGLSATGSDLDVAIEGRGYLEV------TLPNGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
              L+ S E          +   +    +    + N +  
Sbjct: 117 DGSLKRSAEGLIVTSDGFAVAPEITIPDDARSISINAAGE 156


>gi|213161842|ref|ZP_03347552.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 232

 Score = 63.5 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 45/205 (21%), Gaps = 24/205 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEIS 161
              +              +   +   A  +          +   Q   A          +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTT 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHD 186
            +     E    N  I+ +++   +
Sbjct: 178 FMNDTGLESIGENLYIETQSSGAPN 202



 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 2/153 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                 +   + +       F    + D  +   +  S  +  N Q  +   F       
Sbjct: 82  SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 ++         +     +         +     +  L     N   ++E   S 
Sbjct: 142 IPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL--YIETQSSG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
           + +           + + Y  T  VN+ EEL  
Sbjct: 200 APNESTPGLNGAGLLYQGYVETSNVNVAEELVN 232


>gi|317130722|ref|YP_004097004.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315475670|gb|ADU32273.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 279

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 44/139 (31%), Gaps = 2/139 (1%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               +     DG  ++    +    +     ++    +  +       +  +     L  
Sbjct: 142 NQNGDYVLGSDGNPIAVPGHYESLRITDEGAILVTLDNGESVAVGELQLVQVTKPQLLTS 201

Query: 403 YARNSIGWLEKNRSD-SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
              N   +        +    +         S+       V++  E++ ++  +++Y  +
Sbjct: 202 LGDNMYVFPNLEELGLAFGDVLNEAAGAQVFSQGMLEQSNVDMGREMTEMMLTQRNYQFN 261

Query: 462 NKLIMFTDKMLQTLLEGVK 480
           ++ I   D+M+  L+  ++
Sbjct: 262 SRAISIADEMMG-LVNTIR 279



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 31/145 (21%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTT-------------------ISPENVTVVTQRSE 58
            ++  ++  N+ N +   Y RRD   +                    +P  + V +  + 
Sbjct: 19  QRKLDTVGNNLANLNTTGYKRRDVSFSDLLFQQVNNQRDAHHEIGRTTPNGIRVGSGSAV 78

Query: 59  NKNMF---DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +         L      +      + +        A                     +S
Sbjct: 79  GQTAVRMEQGALRTTERELDIALTEKGYL----FELAPAEDGTRRFTRDGAFY-----FS 129

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNT 140
            N   D     V  N + V+ +   
Sbjct: 130 PNPDVDGENFIVNQNGDYVLGSDGN 154


>gi|285018207|ref|YP_003375918.1| flagellar basal-body rod protein flgg [Xanthomonas albilineans GPE
           PC73]
 gi|283473425|emb|CBA15930.1| probable flagellar basal-body rod protein flgg [Xanthomonas
           albilineans]
          Length = 261

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 2/211 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P G   +  Q+   +      ++   ++       ++   A +       F+   + D 
Sbjct: 51  QPGGASSSQTQLPSGLQLGTGVRVVATSKDFEQGSQQQTGRALDVMVNGRGFLEVQMPDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +   +  S  +    Q  +N  +    G    +   ++         +     +     
Sbjct: 111 TSAYTRDGSLQVNAQGQLVTNSGYAIQPGIQIPEGAQSLTIGNDGTVSVQVPGSAAALQV 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L    +N   ++E   S                 +       VN+ E
Sbjct: 171 GSLTLTDFINPSGLQATGQNL--YVETAASGPAQSGTPGLNGLGTTVQGALEGSNVNVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           EL  +I+ +++Y ++ K I  TD ML  L  
Sbjct: 229 ELVSMIETQRAYEMNAKAISTTDAMLGYLNN 259



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 15/137 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54
           +      A+   +    + + +  N+ N     + R                    +  T
Sbjct: 1   MNQALWVAKTGMDAQQTRMSVVSNNLANTSTTGFKRDRASFEDLLYQQRRQPGGASSSQT 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-------DHYNNSPTHYISKL 107
           Q      +   V    +S   +Q   Q      ++M               S       L
Sbjct: 61  QLPSGLQLGTGVRVVATSKDFEQGSQQQTGRALDVMVNGRGFLEVQMPDGTSAYTRDGSL 120

Query: 108 RDSLESYSKNLSEDILG 124
           + + +      S   + 
Sbjct: 121 QVNAQGQLVTNSGYAIQ 137


>gi|297543694|ref|YP_003675996.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841469|gb|ADH59985.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 266

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 2/158 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D            +       P     G  +         +++    +     D  
Sbjct: 111 YYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTGKDISVSPMGVISVKNPDGT 170

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        LL    N   +     S         +     + + +  T  V
Sbjct: 171 TQEVATLGIYNFVNPQGLLSVGNNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNV 228

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 229 QVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/261 (8%), Positives = 62/261 (23%), Gaps = 25/261 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A +           I  N+ N +   + R                     +  
Sbjct: 1   MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGR 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+                 
Sbjct: 61  PVNMQVGVGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVL------GPDGTVYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S +  +  L        + D+   +V +       V  +   + K  +     +
Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTGKDISVSPMGVISVKNPDGTTQEV 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   V    +     + ++  +   Q          +  +       +++ V    
Sbjct: 175 ATLGIYNFVNPQGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEM 234

Query: 224 GTTLFETVPRDINFEKMNSYT 244
              +      +IN + + +  
Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255


>gi|158321569|ref|YP_001514076.1| hypothetical protein Clos_2549 [Alkaliphilus oremlandii OhILAs]
 gi|158141768|gb|ABW20080.1| protein of unknown function DUF1078 domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 264

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 3/218 (1%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
             + V        LQ+   V+P+   +L     +          I G    V      D 
Sbjct: 50  TTNLVDGEGSPVNLQVGHGVMPVATTRLFTTGNLERTDNPFDMAINGEGFFVIEAPSGDR 109

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D      +                     ++          +     +     D  
Sbjct: 110 FYTRDGNFKLSVEGDEMRLVTSDGYTVVSEFEDAIYFDGTMKEITVNANGLITAETEDGE 169

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +A       LL   +N   + E   S         +   + I ++Y  T  V
Sbjct: 170 IEEIATIALANFINPEGLLAVGKNL--YKETVASGEAVFME-EEARTSDIVQNYLETSNV 226

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  LI  +++Y I++K I  +D+ML       +
Sbjct: 227 QIVDEMVRLITAQRAYEINSKAIQTSDEMLGIANNLRR 264



 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 24/121 (19%), Gaps = 13/121 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVV 53
               A +          +I  N+ N +   Y ++                    E   V 
Sbjct: 3   ALWTAASGMKAQQLNMDTISNNLANVNTTGYKKQKVEFKDLLYANMRTTNLVDGEGSPVN 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLE 112
            Q               +  + +           E     +    +         + S+E
Sbjct: 63  LQVGHGVMPVATTRLFTTGNLERTDNPFDMAINGEGFFVIEAPSGDRFYTRDGNFKLSVE 122

Query: 113 S 113
            
Sbjct: 123 G 123


>gi|78067835|ref|YP_370604.1| flagellar basal body rod protein FlgG [Burkholderia sp. 383]
 gi|77968580|gb|ABB09960.1| conserved hypothetical protein [Burkholderia sp. 383]
          Length = 262

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 74/251 (29%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               +    + +++    + +N       V        + +    +  Q           
Sbjct: 11  GMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQTELPSGLQLGT 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            + ++A   + +         + +          +   D         +   N Q +   
Sbjct: 71  GVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSFQTNAQGQLVT 130

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S                    G   ++         +     +            AR   
Sbjct: 131 SSGYQVLPAITIPQNATSLTIGKDGVVTVTQAGSTNSVQIGSLQVATFINPAGLEARGEN 190

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            + E   S + ++          +S++Y  +  VN+ +EL  +I+ +++Y I++K +  +
Sbjct: 191 LFSETTSSGAPNVSQPGLNGAGTLSQNYVESSNVNVVQELVNMIQTQRAYEINSKAVTTS 250

Query: 469 DKMLQTLLEGV 479
           D+MLQT+ +  
Sbjct: 251 DQMLQTVTQMK 261



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/134 (5%), Positives = 23/134 (17%), Gaps = 15/134 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q   I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+                              +        
Sbjct: 61  ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120

Query: 108 RDSLESYSKNLSED 121
           + + +      S  
Sbjct: 121 QTNAQGQLVTSSGY 134


>gi|148256792|ref|YP_001241377.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. BTAi1]
 gi|146408965|gb|ABQ37471.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Bradyrhizobium sp. BTAi1]
          Length = 262

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 55/188 (29%), Gaps = 2/188 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             R +      +   + +       F    + D   +  +  +  +    +  +      
Sbjct: 77  TPRSMTQGTLSQTGNSLDLAISGEGFFKILMPDGTFQYTRDGTFQMDNQGRIVTAQGNPV 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                  +    +   A     +     + +       +        L     N      
Sbjct: 137 QPTISIPQNASGITVNAQGQVSVTLPGSTTSNIVGQLQLTRFINKAGLQPVGNNQFTD-- 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +    + +Q     I++       V++  E+S LI  +++Y ++ K+I   D+M+
Sbjct: 195 TPSSGAPQDGVANQDGLGSITQGSLEQANVDVVSEMSELIAAQRAYEMNAKVISAADQMM 254

Query: 473 QTLLEGVK 480
           Q+     +
Sbjct: 255 QSTTALFR 262



 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/241 (7%), Positives = 48/241 (19%), Gaps = 36/241 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  NI N     + ++                          
Sbjct: 3   ALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYDHVRRVGAQSSDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    +++      + F  +              
Sbjct: 63  PVGIDIGGGVKTVGTPRS---MTQGTLSQTGNSLDLAISGEGFFKIL------MPDGTFQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--EL 158
                  +   +        + +  T+           N   +    +       I  +L
Sbjct: 114 YTRDGTFQMDNQGRIVTAQGNPVQPTISIPQNASGITVNAQGQVSVTLPGSTTSNIVGQL 173

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           +++          V N+      +S        +Q  +       +   +  V +    +
Sbjct: 174 QLTRFINKAGLQPVGNNQFTDTPSSGAPQDGVANQDGLGSITQGSLEQANVDVVSEMSEL 233

Query: 219 V 219
           +
Sbjct: 234 I 234


>gi|299066528|emb|CBJ37718.1| Flagellar basal-body rod protein (Distal rod protein) [Ralstonia
           solanacearum CMR15]
          Length = 263

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 30/153 (19%), Gaps = 28/153 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +                   +I  N+ N +   + +                        
Sbjct: 1   MFDALYVGATGMQAQQLNLDTIANNLANVNTTGFKKSRVSFTDLVAQEAGRIQPTSDASL 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              +  P     V   S  K      +    S+       + F  +           +  
Sbjct: 61  GPLSALPGLGAGVGISSVAKLFDTGNMQQTGSSFDVAIQGEGFLEVA------LPDGSRA 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 L+ + +      +  ++   +   +  
Sbjct: 115 FTRGGTLKVNSDGMLVTQAGYVVKPGISVPSNA 147



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 58/193 (30%), Gaps = 4/193 (2%)

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +P     +   +   +           + +          +   D         T+ VN
Sbjct: 65  ALPGLGAGVGISSVAKLFDTGNMQQTGSSFDVAIQGEGFLEVALPDGSRAFTRGGTLKVN 124

Query: 342 PQYR--SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 +   ++   G        ++   A     I+    S   +     +A   +   
Sbjct: 125 SDGMLVTQAGYVVKPGISVPSNAKDLTIAADGHVRISVPNQSSPIDAGQLELAHFASPGM 184

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           LL    N   +   + S    +    Q      ++ +     V + +E+  L+  +++Y 
Sbjct: 185 LLAQGDNL--YRASDTSGEPVVGKAGQDNLGTFAQGFLEGSNVKMIDEMVGLMVAQRAYE 242

Query: 460 ISNKLIMFTDKML 472
            + K++  +D++L
Sbjct: 243 ANVKVVQASDEIL 255


>gi|254478136|ref|ZP_05091519.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035998|gb|EEB76689.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 251

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 65/249 (26%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVT----- 51
           ++     A +     ++    +  N+ N +   Y +   + +  P               
Sbjct: 1   MIRGLYTAASGMLAQTKVMDVLANNLANVNTVGYKKDVVVLSSFPNFETIREGGDNVPPD 60

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   + +    +  L   +  +        F  +          + + T  
Sbjct: 61  RKVGRIEYGVLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMN 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + + Y        +  +  D + +   N   + + V ++R       +      
Sbjct: 121 ADGYLVTKDGYLVLGENGPIRLSQGDVSVDENGNIINNGQLVDRLRIVDFDNYDALKKQG 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                    VN  I   T             + + + ++    IS +    ++  V T+ 
Sbjct: 181 DNLFYLDNAVNTQIIPATGRIKQGFLEGSNVNSVKEMVN---MISVMRNYESNQKVVTAF 237

Query: 224 GTTLFETVP 232
             TL + V 
Sbjct: 238 DETLGKAVN 246



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + +     VN  +E+  +I V ++Y  + K++   D+ L   + 
Sbjct: 199 GRIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTAFDETLGKAVN 246


>gi|114762160|ref|ZP_01441628.1| flagellar basal-body rod protein FlgC [Pelagibaca bermudensis
          HTCC2601]
 gi|114545184|gb|EAU48187.1| flagellar basal-body rod protein FlgC [Roseovarius sp. HTCC2601]
          Length = 130

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS  +   + + +     + +   +  NI N D   Y R+        E    V +    
Sbjct: 1  MSAFSDALSVSSSGLRAQADRLRVVSENIANVDTPGYRRKTLPFE-LGEGSDGVREVQAG 59

Query: 60 KNMFDKV 66
              D+ 
Sbjct: 60 DTRLDRS 66



 Score = 36.5 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V+L  EL+   + ++SY  + K+   T +M  +L++ ++
Sbjct: 88  TNVDLIVELADAREAQRSYEANLKMFEQTRQMSSSLMDLLR 128


>gi|85710166|ref|ZP_01041231.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1]
 gi|85688876|gb|EAQ28880.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1]
          Length = 263

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 2/160 (1%)

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
           + PG F  +     D    +  + T+    Q  +   +         +   N+       
Sbjct: 99  DGPGFFQVELPGGGDIAYTRAGNFTLSPEGQLVTTQGYALTPPIQVPQGAQNITIAPDGT 158

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
                   +         VA       L     N +  +E   S   D  +  Q    +I
Sbjct: 159 VSAVQPGQTAPIQIGQLQVASFVNPAGLRAIGDNFL--VETAASGPVDAGLAGQFGRGNI 216

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +    T  VN+ EEL  +I+ +++Y I++K++   D+ML
Sbjct: 217 RQGMLETSNVNVVEELVEMIEAQRAYEINSKMVSSVDEML 256



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 56/236 (23%), Gaps = 36/236 (15%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------ 45
            +  + A+        +   I  N+ N     + R                         
Sbjct: 3   TSALHVARTGLEAQDARMRVIANNLANIGTTGFKRDRAEFATLAYQEMRVAGQQSTQQTA 62

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V              L+   +++        F  ++          + 
Sbjct: 63  FATGLNLGTGVQVTGTSRIE---AQGTLNQTGNSLDLALDGPGFFQVE-----LPGGGDI 114

Query: 100 PTHYISKLRDSLESYSKNLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                     S E          L     V   A+ +    + +   VQ  +    +  +
Sbjct: 115 AYTRAGNFTLSPEGQLVTTQGYALTPPIQVPQGAQNITIAPDGTVSAVQPGQTAPIQIGQ 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ--RDVLLQKISEIIGISTIV 211
           L++++         + ++ +    AS         Q  R  + Q + E   ++ + 
Sbjct: 175 LQVASFVNPAGLRAIGDNFLVETAASGPVDAGLAGQFGRGNIRQGMLETSNVNVVE 230


>gi|319409187|emb|CBI82831.1| Flagellar basal-body rod protein flgG [Bartonella schoenbuchensis
           R1]
          Length = 264

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/197 (8%), Positives = 35/197 (17%), Gaps = 37/197 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  N+ N +   + R                           
Sbjct: 5   SLSIAATGMAAQQTNLDVIANNLANINTTGFKRARAEFADLMYVADRAVGVPNMLNQAIV 64

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R  N            +A+        +  +++         N  
Sbjct: 65  PEGAMIGMGVRTAAVRKVN---MQGAFVQTGNALDLAINGNGWFEVQD------PNGNVF 115

Query: 101 THYISKLRDSLESYSKNLSED---ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    S     + L  +         I +    V    T   +        +    
Sbjct: 116 YTRSGAFNLSETGQIETLDGNLVQPAITIPIGSKNITVSPDGTVYYQTDMDPTPVEAGRL 175

Query: 158 LEISNLRRFLSELTVVN 174
             ++ +     E    N
Sbjct: 176 NLVNFVNAVGLEAVGDN 192



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 50/168 (29%), Gaps = 2/168 (1%)

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
           +   A +       +      + +    +  +  +    Q  +    L            
Sbjct: 90  QTGNALDLAINGNGWFEVQDPNGNVFYTRSGAFNLSETGQIETLDGNLVQPAITIPIGSK 149

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           N+              D          +      V L     N   + E   S +     
Sbjct: 150 NITVSPDGTVYYQTDMDPTPVEAGRLNLVNFVNAVGLEAVGDNL--FRETPASGAPVPGF 207

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +  I ++   +  V+  +E++ LI  ++SY +++K+I  +D+M
Sbjct: 208 PKDDGYGGIMQAMLESSNVDPVKEITELIAAQRSYEMNSKVIQASDEM 255


>gi|315929129|gb|EFV08356.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 250

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/205 (8%), Positives = 39/205 (19%), Gaps = 31/205 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
             + A         Q      NI N +   + +                         SP
Sbjct: 3   SLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTLSP 62

Query: 48  ENVTVVTQRS---ENKNMFDKVLHAHSSA-IGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             + V          K   +  L + S+  +        F  ++                
Sbjct: 63  SGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQ------LPDGTIGYTR 116

Query: 104 ISKLRDSLESYSKNLSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
             +     E    N     L              V    T +  +   + +        +
Sbjct: 117 NGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSVMLPGEQQETQIGQVELV 176

Query: 161 SNLRRFLSELTVVNDAIKFKTASKH 185
             +          N  ++   +   
Sbjct: 177 QFINPAGLHSMGDNLYLETGASGAP 201



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 41/163 (25%), Gaps = 2/163 (1%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
               +       F    + D      +    T        ++  +         +    +
Sbjct: 90  TDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAI 149

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                    +    +          +        L     N   +LE   S +    +  
Sbjct: 150 NVATDGTVSVMLPGEQQETQIGQVELVQFINPAGLHSMGDNL--YLETGASGAPVAGIAG 207

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           Q     I   +     V L EE++ LI  +++Y   +K I  +
Sbjct: 208 QDGLGTIRHGFIELSNVQLVEEMTDLITGQRAYEAGSKAITTS 250


>gi|254292905|ref|YP_003058928.1| flagellar basal body rod protein FlgG [Hirschia baltica ATCC 49814]
 gi|254041436|gb|ACT58231.1| flagellar basal-body rod protein FlgG [Hirschia baltica ATCC 49814]
          Length = 261

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 2/181 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
               ++   + +       +    + D  +   +  + ++  + Q  +   +    G   
Sbjct: 83  QGPVQQTSNSYDVAMQGDGYFIVQLPDGRDAYTRAGNFSVNGDGQIVTEDGYTVSPGINV 142

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
            +   +V   A           +   +     +A       L     N +  LE   S +
Sbjct: 143 PEDTLSVTINAQGTVTATTAGATDPTDLGALELARFVNPAGLDAIGDNLL--LETVASGA 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            ++     + F  I + +  T  VN   E+S LI  +++Y +++K+I  TD+MLQT  + 
Sbjct: 201 ANVGQAGALGFGTILQGFLETSNVNAVTEISALINAQRAYEMNSKVITATDEMLQTTSQL 260

Query: 479 V 479
            
Sbjct: 261 K 261



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/174 (6%), Positives = 28/174 (16%), Gaps = 34/174 (19%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  NI N +   Y R+                          
Sbjct: 3   ALSTAATGMQAQQLNVEVISNNIANMNTTGYKRQRAEFQDLLYTNMEKMGVSSSDANTIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +      +   S++         +  ++             
Sbjct: 63  PTGVQIGTGVKAGSVYRITEQ---GPVQQTSNSYDVAMQGDGYFIVQ------LPDGRDA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
                    + +          +   +    + +    N             D 
Sbjct: 114 YTRAGNFSVNGDGQIVTEDGYTVSPGINVPEDTLSVTINAQGTVTATTAGATDP 167


>gi|167038473|ref|YP_001666051.1| hypothetical protein Teth39_2092 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116868|ref|YP_004187027.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166857307|gb|ABY95715.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929959|gb|ADV80644.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 266

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 2/163 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                    D            +       P     G  +         +++    +   
Sbjct: 106 PDDKVYYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVK 165

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             D   +      +        LL    N   +     S         Q     + + + 
Sbjct: 166 NPDGTTQEVATLGIYNFVNPQGLLSVGSNL--YEPTEASGQPSTRDDFQGRMGKVMQGFL 223

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            T  V + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/249 (9%), Positives = 53/249 (21%), Gaps = 32/249 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A             I  N+ N +   + R                     +  
Sbjct: 1   MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+          +      
Sbjct: 61  PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDDKVYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S          + L     D    +  + N    +  +          + + N 
Sbjct: 115 DGSFKLS-------ADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNP 167

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                E+  +                 L +      + S        +       + TS+
Sbjct: 168 DGTTQEVATLGIYNFVNPQGLLSVGSNLYEPTEASGQPSTRDDFQGRMGKVMQGFLETSN 227

Query: 224 GTTLFETVP 232
              + E V 
Sbjct: 228 VQVVKEMVD 236


>gi|313673746|ref|YP_004051857.1| flagellar basal-body rod protein flgc [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312940502|gb|ADR19694.1| flagellar basal-body rod protein FlgC [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 134

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M    + N A    +    +   I  N+ NA+         Y R+D +     E      
Sbjct: 1  MGFFNILNVAATGLSAQRIRINVISSNLANANTTKTETGEPYKRKDVVFKELLEGEYTGG 60

Query: 55 QR 56
           R
Sbjct: 61 VR 62



 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            VN  EE+  +I+  +SY  +  ++    ++
Sbjct: 94  NVNPIEEMVNMIEASRSYEANVTVLNTAKQL 124


>gi|254499106|ref|ZP_05111796.1| hypothetical protein LDG_3179 [Legionella drancourtii LLAP12]
 gi|254351645|gb|EET10490.1| hypothetical protein LDG_3179 [Legionella drancourtii LLAP12]
          Length = 408

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/450 (9%), Positives = 103/450 (22%), Gaps = 59/450 (13%)

Query: 35  NYVRRDTMTTISPEN------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88
            + R D   +              V       N                 +   F  +  
Sbjct: 5   GFKRSDVFYSSLGNGQGEEGMGHGVRVSGMRTNYGPGNYLKGMGDSDLAIVGHGFFVV-- 62

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
                   N            + E       +        D+A  +        +  Q  
Sbjct: 63  ----KLKNNEFVYTRDGHF--NFEDGILIDRKTGGQVQGYDSAGNLAPIHE---KGPQTT 113

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
              A ++I L+ S +   + E    +  I              ++++     +  +  I 
Sbjct: 114 PGKASRDIFLKGSFVAHLIDEKKNTDPNIPDPNIPDPTPKAPTEKKNKYENVVLTLDKIY 173

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 + +     +   L E    +  +   +                           
Sbjct: 174 DAQGKAHKVTFEFKNEPPLGEQYNLEKFWVLEDV-------------------------- 207

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                     +D  +  + +Q  E A    G+   KD I                 +   
Sbjct: 208 ------HCDDKDVDITPYYDQKIEFAYSSSGAEPGKDSIQFGLNGKQVNIYFGSAHNGST 261

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              Q  +     + + R+N     + G    K  +   +  G          +     + 
Sbjct: 262 NSVQLDTVEGAFSNEKRTNIEIDYNDGYGVGKQSYWSFDEEGQIAYYYDNGQTIKGIHVG 321

Query: 389 DPVAGINTN---VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                   N    T   + R          +        +   F  I  +      V+  
Sbjct: 322 LARFDDMENNLIQTQDNFFR-------AKTNRGIHYGRPNNNGFECIRANELEASNVDST 374

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            E + ++ +++ +   ++++    ++L+ L
Sbjct: 375 AEFANIVVLQRMFQACSQIMDIDKQLLEEL 404


>gi|296135671|ref|YP_003642913.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12]
 gi|295795793|gb|ADG30583.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12]
          Length = 261

 Score = 63.1 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +      +   + +       F      +      +  +  +    Q  +   +L     
Sbjct: 81  MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTFQLNNQGQLVTANGYLVQPTV 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +V         +     +  +      +A       L     N   +L+   S
Sbjct: 141 TIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLASFVNPTGLQSIGDNL--YLQTGSS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + +    +      + + Y  +  VN+  EL  +I  +++Y +++K +  +D+MLQ + 
Sbjct: 199 GAPNTGQPTLNGLGSVQQGYLESSNVNVVAELVDMISTQRAYEVNSKAVTASDQMLQYVN 258

Query: 477 E 477
            
Sbjct: 259 N 259



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/250 (7%), Positives = 54/250 (21%), Gaps = 28/250 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+        +   I  N+ N +   +     +                    
Sbjct: 1   MIRSLYVAKTGLEAEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQST 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97
                      V  V+       M    L    +++      Q F  + E      +  +
Sbjct: 61  QYPSGLQLGTGVRPVSTERL---MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRD 117

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
            +          +   Y    +  I                 T   +    +  A +   
Sbjct: 118 GTFQLNNQGQLVTANGYLVQPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLAS 177

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                  + + +   +         +     + L        + S +  ++ +V   +  
Sbjct: 178 FVNPTGLQSIGDNLYLQTGSSGAPNTGQPTLNGLGSVQQGYLESSNVNVVAELVDMISTQ 237

Query: 218 VVYTSDGTTL 227
             Y  +   +
Sbjct: 238 RAYEVNSKAV 247


>gi|302338304|ref|YP_003803510.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM
           11293]
 gi|301635489|gb|ADK80916.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM
           11293]
          Length = 264

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 26/68 (38%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            N S                 + +     V++ +E+  +I  +++Y +++K I  +D ML
Sbjct: 197 TNASGDAIPGRPGFDGMGQTVQRFLEMSNVSVVQEMVNMIVAQRAYELNSKAIQTSDTML 256

Query: 473 QTLLEGVK 480
                  +
Sbjct: 257 GIANSLKR 264



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 55/241 (22%), Gaps = 33/241 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           ++     A +          +I  N+ N +   + +                       T
Sbjct: 1   MMRSLWTAASGMTGQQFNIDTISNNLSNVNTTGFKKNRADFEDLLYQTSRVAGTPATELT 60

Query: 45  ISPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  V V       +  K      L    +          F  +  +        +   
Sbjct: 61  TVPTGVQVGHGVKVAATQKMFTQGALQNTGNVTDLAIQGDGFFRVLLI------DGSYGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN-FNTSAREVQKIRADADKEIELEI 160
                 +        N +   L   V+        +   +    +    A  D  +++  
Sbjct: 115 SRDGSFKIDSNGQLVNSNGHRLIPEVVLPENFERDSLTISQDGRITVKVAGNDDPVQVGQ 174

Query: 161 SNLR-----RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
             L        LS +   N  I   +          D     +Q+  E+  +S +    N
Sbjct: 175 LELYRFVNPAGLSAIGQNNFKITNASGDAIPGRPGFDGMGQTVQRFLEMSNVSVVQEMVN 234

Query: 216 D 216
            
Sbjct: 235 M 235


>gi|255021356|ref|ZP_05293404.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969219|gb|EET26733.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus
           ATCC 51756]
          Length = 261

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 2/176 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +          A +       F      D      +  +  +    Q  ++  +L     
Sbjct: 81  MTQGNLTSTGNALDLGINGQGFFQIMQPDGTIAYTRDGTFQLNNQGQLVTSNGYLLQPPV 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  ++         +     S  +      +A       L     N   +L+   S
Sbjct: 141 TIPPNAQSITIGTDGTVSVVLPGQSQPQQVGSIQLANFINPTGLQSIGDNL--YLQTGSS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +      +      + + Y  +  VN+  EL  +I  +++Y I++K +  +D ML
Sbjct: 199 GAPQTGQPTLNGLGSVQQGYLESSNVNVVSELVDMIATQRAYEINSKAVSTSDSML 254



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/252 (7%), Positives = 53/252 (21%), Gaps = 28/252 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A         +   I  N+ N +   + +   +                    
Sbjct: 1   MMRSLYVAATGLEGEQTKMDVIANNLANVNTTGFKQSRAVFQDLLYQNLRQPGAQSSQTT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97
                      V VV        M    L +  +A+      Q F  + +      +  +
Sbjct: 61  QYPSGLQLGTGVRVVATERL---MTQGNLTSTGNALDLGINGQGFFQIMQPDGTIAYTRD 117

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
            +          +   Y       I                     + Q  +  + +   
Sbjct: 118 GTFQLNNQGQLVTSNGYLLQPPVTIPPNAQSITIGTDGTVSVVLPGQSQPQQVGSIQLAN 177

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                  + + +   +         +     + L        + S +  +S +V      
Sbjct: 178 FINPTGLQSIGDNLYLQTGSSGAPQTGQPTLNGLGSVQQGYLESSNVNVVSELVDMIATQ 237

Query: 218 VVYTSDGTTLFE 229
             Y  +   +  
Sbjct: 238 RAYEINSKAVST 249


>gi|254437698|ref|ZP_05051192.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus
           307]
 gi|198253144|gb|EDY77458.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus
           307]
          Length = 257

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 2/166 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            + +       F    + D      +  S +   +    +   ++             V 
Sbjct: 87  NSFDLAIDGQGFFQVLMPDGRVGYTRNGSFSRSADGTMTTASGYVIQPEIRIPDEAVEVN 146

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +        +      +A       L     + +  +E   S +  +     
Sbjct: 147 ISQDGIVSVRSSGQEVAQEVGQLSLATFANPRGLQPIGESFV--VETTASGAATVAAPQS 204

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                + +       VN+ ++L  +I+ +++Y +S+K I  +D+M+
Sbjct: 205 QGLGKLMQGALEASNVNVVQQLVEMIETQRAYEVSSKAITSSDEMM 250



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 30/149 (20%), Gaps = 27/149 (18%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------------- 51
            + A+   N    +   I  N+ N +   +             V+               
Sbjct: 1   MHVAKTGLNAQQTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVSRAGGDQTSEGTALTS 60

Query: 52  ----VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                   R+ N         +    ++       Q F  +                   
Sbjct: 61  ALALGTGVRAVNTQKLYTQGGMVNTDNSFDLAIDGQGFFQVL------MPDGRVGYTRNG 114

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEV 134
               S +      S  ++   +    E V
Sbjct: 115 SFSRSADGTMTTASGYVIQPEIRIPDEAV 143


>gi|90415316|ref|ZP_01223250.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine
           gamma proteobacterium HTCC2207]
 gi|90332639|gb|EAS47809.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine
           gamma proteobacterium HTCC2207]
          Length = 261

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 2/204 (0%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            G++ A  +    ++     ++    ++           A +       + +    D   
Sbjct: 53  GGQVDAESETPTGLMLGTGTRVVATEKLHAQGNIITTENALDLAISGDGYFSVQQADGTI 112

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
              +  S  +       +             +   ++         +       +     
Sbjct: 113 AYSRDGSFKLSAEGNLVTAGGQTLLPAITVPQNAASLTIGRDGVVTVELSNGGGSSQIGQ 172

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             ++    N  L    RN +   + N S    + +        + +       VN+ EE+
Sbjct: 173 LQLSRFVNNSGLQPIGRNLM--QQTNASGDPLVVLPGADGAGMLMQGALEASNVNVVEEM 230

Query: 449 SFLIKVEQSYNISNKLIMFTDKML 472
             +I+ +++Y +++K I   D ML
Sbjct: 231 VNMIETQRAYEVNSKAISAADGML 254



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 31/142 (21%), Gaps = 27/142 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT-- 54
           + A    A+        + + I  N+ N +   + +   +          P    V    
Sbjct: 1   MDASLWIAKTGLTAQQTRMSVISNNLANVNTTGFKKDRAVFEDLLYQNIVPAGGQVDAES 60

Query: 55  -------------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +  K      +    +A+        + ++++             
Sbjct: 61  ETPTGLMLGTGTRVVATEKLHAQGNIITTENALDLAISGDGYFSVQQA------DGTIAY 114

Query: 102 HYISKLRDSLESYSKNLSEDIL 123
                 + S E          L
Sbjct: 115 SRDGSFKLSAEGNLVTAGGQTL 136


>gi|254255089|ref|ZP_04948406.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158]
 gi|124899734|gb|EAY71577.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158]
          Length = 261

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 50/191 (26%), Gaps = 2/191 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           L    +       +      +   V   F+   + + +    +          +  +   
Sbjct: 73  LVGTQKTFTAGNLQTTGQPLDVAIVGDGFLQVEMANGETGYTRAGQLRRNDEGRLTNAQG 132

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                         +V         +     +         +A       LL    N   
Sbjct: 133 LPLVPTIDIPADATSVTIGENGTVSVTTGSSAVPTEVGRLQLANFVNPAGLLAVGGNL-- 190

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++E   S               + +       V   EE+  +I  +++Y +S K++   D
Sbjct: 191 FVETGASGPPSEGEPGADGLGVVRQGALEGSNVQAVEEMVEMITAQRTYEMSTKVLSAAD 250

Query: 470 KMLQTLLEGVK 480
            M+Q L +  +
Sbjct: 251 SMMQYLAQVAR 261



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 34/151 (22%), Gaps = 26/151 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----------------I 45
           +      ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNHALWISKTGIQAQDAKLQTIANNLANVNTVGFKRDRAVFEDLFYRTEQQPGAQIADNA 60

Query: 46  SPENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
           +   V +                 L      +    +   F  ++           +   
Sbjct: 61  TGPGVQMGNGTRLVGTQKTFTAGNLQTTGQPLDVAIVGDGFLQVE------MANGETGYT 114

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              +LR + E    N     L  T+   A+ 
Sbjct: 115 RAGQLRRNDEGRLTNAQGLPLVPTIDIPADA 145


>gi|315636309|ref|ZP_07891559.1| flagellar hook protein FlgE [Arcobacter butzleri JV22]
 gi|315479398|gb|EFU70081.1| flagellar hook protein FlgE [Arcobacter butzleri JV22]
          Length = 583

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/462 (7%), Positives = 113/462 (24%), Gaps = 24/462 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE 58
           +++      +  +N  +  +    NI N+    +   +         +      V+ +S 
Sbjct: 1   MISALWNGVSGISNYDKGISVESNNIANSSTTGHKLDEITFADMLYTNGGYGKGVSTQSI 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +K      +++  + +      + F  + +                   + + + + +  
Sbjct: 61  SKQFAQGSINSTGATLDMAIDGKGFFIVSDKAGEI------YYTRAGDFKQTKDGWLQTQ 114

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               +   V  +      N   +    +  +      I      +    ++ T       
Sbjct: 115 DGMNVLGLVPQSKLISSTNPQDTMFTTEYSKNVVSTNINDGKGTINNINAKTTDYTKTAT 174

Query: 179 FKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
              +S    +      + + +   I++ +            V   S  + +  +      
Sbjct: 175 ADDSSLKGDNYKSAQAKINDVDTLITDYLNKLNKYDGTQASVASVSQISKVDFSSKFSNL 234

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK------GKIKALLQIRDSVVPIFQNQL 290
             + NS ++  +     +      +     +         + +    + D      Q Q+
Sbjct: 235 LSEGNSISLNIDGKNFSVAFNNDGTASQQDMQDIYNFLSPEGRTTYGLSDPSTIPTQTQV 294

Query: 291 DEMARVLIG-SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           D++   +   +  +  P +  +E                         +     Y +  +
Sbjct: 295 DDLFSAIPDQAVIDAMPTSTPAEIAAKAAAQAQKDQAVTAYQTAYQARVDAQTSYNTAKN 354

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +     ++ K        A   D +                A +N        ++ ++ 
Sbjct: 355 AISAYKDLADKISNTAGYSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVA 414

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
                 +         +         +     V    E + L
Sbjct: 415 --GSGMAMVDSAKDALKQAVEKAGGKFLEITNV---MEYANL 451



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/458 (11%), Positives = 106/458 (23%), Gaps = 33/458 (7%)

Query: 24  IVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF 83
            + NI NA   +Y +  T    S +               D    A +       L+  +
Sbjct: 158 TINNI-NAKTTDYTKTATADDSSLKG--------------DNYKSAQAKINDVDTLITDY 202

Query: 84  EALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
                          S +            +     +   L     + +     +   S 
Sbjct: 203 LNKLNKYDGTQASVASVSQISKVDFSSKFSNLLSEGNSISLNIDGKNFSVAFNNDGTASQ 262

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
           +++Q I      E                     I  +T          DQ  +     S
Sbjct: 263 QDMQDIYNFLSPEGRTT---------YGLSDPSTIPTQTQVDDLFSAIPDQAVIDAMPTS 313

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
               I+             +   T      R       N+      +     D +  ++ 
Sbjct: 314 TPAEIAAKAAAQAQKDQAVTAYQT--AYQARVDAQTSYNTAKNAISAYKDLADKISNTAG 371

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
             ++V  G +     I      I   +L++       S            +     +   
Sbjct: 372 YSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVAGSGMAMVDSAKDALKQA 431

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           ++    K  +  +     N              ++        +        +       
Sbjct: 432 VEKAGGKFLEITNVMEYANLGSYGTSDLNLRLDTLGLVEGDFGEASVSDDGFVFVTSGDN 491

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                    A       L     N         S +           N I E       V
Sbjct: 492 KFLVGRVSTAAFRNEQGLEAVGDNKYS--ATKSSGTAYNAD----GMNKIKEKSLERSNV 545

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    L+ L+  +++Y  S+K I  +D  L+T ++ VK
Sbjct: 546 SYSSTLTSLMVYQRAYEASSKSITTSDDFLKTAIDMVK 583


>gi|312164118|gb|ADQ38281.1| flagellar hook protein [Azospirillum brasilense]
          Length = 291

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/287 (9%), Positives = 67/287 (23%), Gaps = 17/287 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVT 54
           M +  +FN         ++   +I  NI NA    +   +T  +       +        
Sbjct: 1   MGITTIFNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNG 60

Query: 55  QRSE-NKNMFDKVLHAHSSAIGQQRLLQSFEALKEM--------MSADDHYNNSPTHYIS 105
            R+    +     +               F  ++++         +A    ++       
Sbjct: 61  VRAFERLDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSG 120

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                 E    N +   L    +D A       + S+     +    D       ++L  
Sbjct: 121 DFSPDKEGRLVNGAGKALMGFKLDPASGTGSFGSLSSMTPVSLSGLQDYREASTQASLNL 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            L               +     + +D+           +         +   V+ +   
Sbjct: 181 NLPYDQAPVAGEITTANTTGVVLNMVDKNGADGAMALRFLKTGQAEDGTSTWQVFNAG-- 238

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            +        N    +  T  S     F     ++     +     +
Sbjct: 239 VVGADGKPVGNGNVNDPTTWKSLGTLNFARNGTLTGGPTGSPVTLTL 285


>gi|289803892|ref|ZP_06534521.1| flagellar hook-associated protein FlgK [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 344

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 77/324 (23%), Gaps = 11/324 (3%)

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI- 201
            ++  +           ++    +          +    +S       +   D     I 
Sbjct: 23  NKIVGVEVSVQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIE 82

Query: 202 --------SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                     + G+ T    + D    T     L      +    K          +   
Sbjct: 83  IPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFS 142

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           I   VV SN  +A     + A  ++ DS      +                D     +  
Sbjct: 143 IGSPVVYSNSNNADKTVSLTA--KVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATK 200

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                +      +        +++  + P   +         + ++  + +   L    D
Sbjct: 201 DADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVD 260

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHIS 433
             +    +            +  N T  +     +  +    S           V   + 
Sbjct: 261 TGDSDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLY 320

Query: 434 ESYSNTVGVNLQEELSFLIKVEQS 457
           +   +  GVNL EE   L + +Q 
Sbjct: 321 KQQQSVSGVNLDEEYGNLQRYQQY 344


>gi|91976161|ref|YP_568820.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           BisB5]
 gi|91682617|gb|ABE38919.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB5]
          Length = 262

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 4/182 (2%)

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                P   + +          I+  D         +   +   R   S           
Sbjct: 83  QGTISPTGNDLDIAIRGEGFFKIQMPDGTFTYSRDGSFTTDNTGRIVTSNGNPVQPTITI 142

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                         +                 +        LL    N     E   S  
Sbjct: 143 PSGASGITINAQGQVTVNVPGSTTPVLLGQIGLTRFINKTGLLPIGDNLFT--ETPASGP 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                 +   F  + +       V +  E+S LI  +++Y ++ K++   D+MLQ+    
Sbjct: 201 PQDGTANTDGFGDMQQKALEQANVEVVNEISDLIAAQRAYEMNAKVVSAADQMLQSTSNM 260

Query: 479 VK 480
            +
Sbjct: 261 FR 262



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 11/60 (18%), Gaps = 4/60 (6%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
              A             I  NI N     Y ++                R       D+
Sbjct: 3  ALYTAATGMAAQELNVQVISNNIANMRTTGYKKQTAAFQDLIY----DHVRRVGAQASDQ 58


>gi|325291939|ref|YP_004277803.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3]
 gi|325059792|gb|ADY63483.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3]
          Length = 262

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 39/184 (21%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   Y R     T                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ +       L    + +    + Q +  ++          ++ 
Sbjct: 63  PEGANIGLGVQTSAVRNIH---TQGNLIETGNKLDVAIIGQGWFQIE------AADGSTL 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +     +    +   +    +        + +   +I   AD     ++
Sbjct: 114 YSRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTARIGNAADFTELGQL 173

Query: 161 SNLR 164
           +   
Sbjct: 174 TIAN 177



 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 2/118 (1%)

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                     ++               +         +A       L     N       
Sbjct: 138 PNINIPTDAQDITITRTGQVTARIGNAADFTELGQLTIANFANEAGLKPLGDNLFSQ--T 195

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             S +  + +     + +I +SY     V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 196 PASGAAVIGVPDDPSYGYIKQSYLEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253


>gi|294339841|emb|CAZ88204.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Thiomonas sp. 3As]
          Length = 261

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +      +   + +       F      +      +  +  +    Q  +   +L     
Sbjct: 81  MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTFQLNNQGQLVTANGYLVQPTV 140

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +V         +     +  +      +A       L     N   +L+   S
Sbjct: 141 TIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLASFVNPTGLQSIGDNL--YLQTGSS 198

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + +    +      + + Y  +  VN+  EL  +I  +++Y +++K +  +D+MLQ + 
Sbjct: 199 GAPNTGQPTLNGLGSVRQGYLESSNVNVVAELVDMISTQRAYEVNSKAVTASDQMLQYVN 258

Query: 477 E 477
            
Sbjct: 259 N 259



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/250 (7%), Positives = 54/250 (21%), Gaps = 28/250 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A+        +   I  N+ N +   +     +                    
Sbjct: 1   MIRSLYVAKTGLEAEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQST 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-N 97
                      V  V+       M    L    +++      Q F  + E      +  +
Sbjct: 61  QYPSGLQLGTGVRPVSTERL---MTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRD 117

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
            +          +   Y    +  I                 T   +    +  A +   
Sbjct: 118 GTFQLNNQGQLVTANGYLVQPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLAS 177

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                  + + +   +         +     + L        + S +  ++ +V   +  
Sbjct: 178 FVNPTGLQSIGDNLYLQTGSSGAPNTGQPTLNGLGSVRQGYLESSNVNVVAELVDMISTQ 237

Query: 218 VVYTSDGTTL 227
             Y  +   +
Sbjct: 238 RAYEVNSKAV 247


>gi|255030384|ref|ZP_05302335.1| flagellar hook protein FlgE [Listeria monocytogenes LO28]
          Length = 189

 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 2/135 (1%)

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                 +     +   Y D          VA  +    L++   
Sbjct: 57  GTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGN 116

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
               ++    S      +  Q     IS S      V+L  E   L+  +  +  + K+I
Sbjct: 117 G--EYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVI 174

Query: 466 MFTDKMLQTLLEGVK 480
              D +++ ++  ++
Sbjct: 175 RVADDVMKQIVNLIQ 189


>gi|218288303|ref|ZP_03492602.1| protein of unknown function DUF1078 domain protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241662|gb|EED08835.1| protein of unknown function DUF1078 domain protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 301

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 75/272 (27%), Gaps = 3/272 (1%)

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           +   + ++         T    T     +     + T    +NP  +   V  +     +
Sbjct: 31  TVGFKQSDVQFADLLSQTMSLGTAGTSPSTGGSGATTGIGGTNPEQVGLGVQVAATQMDM 90

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
            +G  +      +  +    N    +        +     + +S     L      +   
Sbjct: 91  SQGPDETTGVPTNVAIQG--NGFFVVTDGTSTYLTRAGNFSVDSAGNLVLPNGVIAEGYS 148

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           +      + T     +           GS +     ++ +       I +   +  K   
Sbjct: 149 SSSKPSSASTTQPTTEINVYQLAGVTLGSGNTVSNVSIGSDGSITATITNGTTTTTKVIG 208

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           +  +A +     L+    N         +         Q  +  ++        V+L ++
Sbjct: 209 YLALAQVPNPQGLVSVGDNLFS-ASSPAAGQPTYWTPGQGTYGTLASGELEGSNVDLSQQ 267

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            + +I  + +Y  +  +I   + +LQ L+   
Sbjct: 268 FAEMIVAQNAYVANTHMIGTDNAILQALVNMK 299



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/184 (7%), Positives = 31/184 (16%), Gaps = 23/184 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +L   N A +           +  NI N +   + + D                      
Sbjct: 1   MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTSPST 60

Query: 44  ----TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                 +    T   Q      +    +           +  +               ++
Sbjct: 61  GGSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTDGTST 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                              +  I       +          +        A         
Sbjct: 121 YLTRAGNFSVDSAGNLVLPNGVIAEGYSSSSKPSSASTTQPTTEINVYQLAGVTLGSGNT 180

Query: 160 ISNL 163
           +SN+
Sbjct: 181 VSNV 184


>gi|295400718|ref|ZP_06810695.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977299|gb|EFG52900.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 285

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 8/207 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +   D  + +   +  +  RVLI   +    I         L  + G +++   +   
Sbjct: 85  GAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRAGAFYLTPSAGNQNVLMLVTSD 144

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            +  +  N      P+  +D        +            +N    S  +  +      
Sbjct: 145 GNPVLDENNAPIWLPNGYKDIEISDNGTITATAPDGRIMRRVNIGVTSILRPQLLQSAGN 204

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
               +        +   +  N + +    +        +++       V+L  EL+ ++ 
Sbjct: 205 NIWTLPDFNALNVNAADVAVNMTGNLRAQIG-------MTQGALEQSNVDLGTELTDMMI 257

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E+SY ++ + I  +D+ML  L+ G++
Sbjct: 258 TERSYQLNARSISISDQMLG-LINGIR 283



 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          M +L     A N      QQ   I  NI N++   + RR+T     
Sbjct: 1  MHVLRSMITAANTMAQLQQQLDVISNNIANSNTAGFKRRETSFGEL 46


>gi|254500847|ref|ZP_05112998.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11]
 gi|222436918|gb|EEE43597.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11]
          Length = 260

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +A    +          +     +A       L     N   +LE + S +      ++
Sbjct: 150 TIAPSGKVQGVDEAGATVDLGQIQLARFVNKAGLEAIGDNL--FLETDASGAPQTGNPNE 207

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +    + +     V+   E++ LI  +++Y +++K+I   D+M  T  + 
Sbjct: 208 DGYGSTQQFFLEMANVDAVTEIADLISAQRAYEMNSKVIQAADQMYSTTTQI 259



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/256 (7%), Positives = 48/256 (18%), Gaps = 22/256 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------PENV 50
               A             I  N+ N     Y ++                         V
Sbjct: 3   ALYTAATGMKAQEYNVEVISNNVANMRTTGYKKQRADFQDLLYQNLRRMGTETSDDGTIV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q      +          ++             E           +          
Sbjct: 63  PTGIQIGTGVKLASTGRVMSQGSMENTGKELDIAIRGEGFFQIQLPGGATGYSRDGSFER 122

Query: 110 SLESYSKNLSEDILGK--TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
                   +    L    T+ +N  ++    +   + V +  A  D         + +  
Sbjct: 123 DQNGQLVTIDGYQLDPNITIPENTRDLTIAPSGKVQGVDEAGATVDLGQIQLARFVNKAG 182

Query: 168 SELTVVN----DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            E    N            + +   D          +++ +  ++ I    +    Y  +
Sbjct: 183 LEAIGDNLFLETDASGAPQTGNPNEDGYGSTQQFFLEMANVDAVTEIADLISAQRAYEMN 242

Query: 224 GTTLFETVPRDINFEK 239
              +           +
Sbjct: 243 SKVIQAADQMYSTTTQ 258


>gi|325111113|ref|YP_004272181.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis
           DSM 5305]
 gi|324971381|gb|ADY62159.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis
           DSM 5305]
          Length = 267

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/183 (9%), Positives = 43/183 (23%), Gaps = 26/183 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+    + A +    +  Q   I  N+ N+    + R                      
Sbjct: 1   MSV-RTLHSAASGMEASLFQLDVIANNLANSGTTGFKRSRAEFEDLFYEHFKLPGAQPAP 59

Query: 46  --SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
             +P  + V      R+   +  +  L+   +++    +   F  +++    D       
Sbjct: 60  QQTPTGIAVGLGAAIRATQVDFTEGSLNQTGNSLDIAIMGDGFFQIQDPTGGDP-----Y 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + E      S                    +     +    +A      + 
Sbjct: 115 YTRAGTFTKNSEGTIVMSSAQTGRPLEPSINIPPTAVNISITSNGEVWYQEAGSSTMTQA 174

Query: 161 SNL 163
             +
Sbjct: 175 GQI 177



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 6/207 (2%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            +     + +   Q    E +    G+  +   +      +      D          + 
Sbjct: 65  GIAVGLGAAIRATQVDFTEGSLNQTGNSLDIAIMGDGFFQIQDPTGGDPYYTRAGTFTKN 124

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
              TI ++      P    +          N+   +           S         +A 
Sbjct: 125 SEGTIVMSSAQTGRP---LEPSINIPPTAVNISITSNGEVWYQEAGSSTMTQAGQIQLAR 181

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              N  L++   N   +   + S    + +  Q     + + +  T  V    EL  LIK
Sbjct: 182 FVNNEGLIQMGENL--YRASDASGVATISIPGQDGAGTLRQGFLETSNVEPVRELVELIK 239

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++  ++++ +   D+MLQ L+ G++
Sbjct: 240 TQRNVELNSEAMKAGDQMLQ-LVNGLR 265


>gi|332800000|ref|YP_004461499.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1]
 gi|332697735|gb|AEE92192.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1]
          Length = 270

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/186 (7%), Positives = 39/186 (20%), Gaps = 28/186 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +              N+ N +   + +                        
Sbjct: 1   MMRALWSASSGMQAQQLNMDITSNNLANVNTAGFKKSRAEFKDLLYETLQRPDSPELLSG 60

Query: 44  TISPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
              P  + V          ++  +  L    +          F         +    N  
Sbjct: 61  AAVPVGIQVGHGVRPSATGRDFNEGNLQPTGNTFDVAIEGTGF------FMVERPDGNLA 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  + SL+   +NL        +  +   +      +   +        ++ +  I
Sbjct: 115 FTRDGSFKVSLDGTDRNLVTSEGYYVLSGDESYITIPEEYTDISISSDGLITGQDEDGTI 174

Query: 161 SNLRRF 166
             L + 
Sbjct: 175 EELGQI 180



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 1/158 (0%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D      +  T               D   ++    +   +++    +     D  
Sbjct: 114 AFTRDGSFKVSLDGTDRNLVTSEGYYVLSGDESYITIPEEYTDISISSDGLITGQDEDGT 173

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        LL    N     E +      +   S   +  + + +     V
Sbjct: 174 IEELGQIGIVKFLNPQGLLAIGNNLFEATEASGEYVP-MEDVSDPGYGTLLQGFLEMSNV 232

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + EE+  LI  +++Y ++ K +  +D+ML       +
Sbjct: 233 QVVEEMVNLIIAQRAYEVNTKAVQASDEMLAQANNLRR 270


>gi|159045792|ref|YP_001534586.1| flagellar basal body rod protein FlgG [Dinoroseobacter shibae DFL
           12]
 gi|157913552|gb|ABV94985.1| flagellar basal-body rod protein FlgG [Dinoroseobacter shibae DFL
           12]
          Length = 261

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +AG      L     N   ++E N S    + +  +       + Y     V+   E++
Sbjct: 174 SLAGFTNAKGLEAIGSNL--FMESNASGPPLIGVPGEDGLGTFRQGYLEASSVDAVREVT 231

Query: 450 FLIKVEQSYNISNKLIMFTDKML 472
            LI+ ++ Y +++K++   D+M+
Sbjct: 232 ELIEAQRGYELNSKVMTAADQMM 254



 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 29/151 (19%), Gaps = 28/151 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------------TIS 46
               A    +    +   I  N+ N +   Y  R                       T  
Sbjct: 3   ALTIAATGMSAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQVKAPGTINASDGTAL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +            +    L      +      + +  +            S    
Sbjct: 63  PTGVQLGLGVRAAAVTVELSQGSLSQTGGDLDLAIEGKGYLEV------TLPSGASAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              L+ S E          +   ++     +
Sbjct: 117 DGSLKRSAEGLIVTSDGYPVVPEIVIPEGTM 147


>gi|327399355|ref|YP_004340224.1| flagellar basal-body rod protein FlgC [Hippea maritima DSM 10411]
 gi|327181984|gb|AEA34165.1| flagellar basal-body rod protein FlgC [Hippea maritima DSM 10411]
          Length = 137

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48
          MS+    N A +  +    +   I  NI NAD     +   Y RRD +      
Sbjct: 1  MSIFDSMNIASSGMSAQRLRMNIISSNIANADTVRTPEGGPYKRRDVVFEAIGY 54



 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E++ LI   ++Y  +  +I    + +Q  L  ++
Sbjct: 103 EMTNLIDAMRTYQANASVIDSAKQTIQAALGILR 136


>gi|163850063|ref|YP_001638106.1| flagellar basal body rod protein FlgG [Methylobacterium extorquens
           PA1]
 gi|218528666|ref|YP_002419482.1| flagellar basal body rod protein FlgG [Methylobacterium
           chloromethanicum CM4]
 gi|240137197|ref|YP_002961666.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Methylobacterium extorquens AM1]
 gi|254559209|ref|YP_003066304.1| cell-distal portion of basal-body rod biosynthesis protein
           [Methylobacterium extorquens DM4]
 gi|163661668|gb|ABY29035.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens
           PA1]
 gi|218520969|gb|ACK81554.1| flagellar basal-body rod protein FlgG [Methylobacterium
           chloromethanicum CM4]
 gi|240007163|gb|ACS38389.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Methylobacterium extorquens AM1]
 gi|254266487|emb|CAX22251.1| flagellar biosynthesis; cell-distal portion of basal-body rod
           [Methylobacterium extorquens DM4]
          Length = 262

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 8/157 (5%)

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                   +  +  +     Y  +P+ L    +       + +  A     +        
Sbjct: 114 YTRAGSFNKNNAGQLVTMEGYAVDPAILIPQNTTQVTINESGQVFAKIDGQVA------L 167

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +N     +A    +  L         + E   S +  +     V +  + + Y     V+
Sbjct: 168 QNVGQLTLANFANDSGLEPLGNGL--YRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVD 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +E++ LI  ++++ +++K+I   D+M  T+ +G++
Sbjct: 226 PVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/249 (8%), Positives = 46/249 (18%), Gaps = 29/249 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        I  NI N +   +       T                     
Sbjct: 3   ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQEAV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99
                    V     R          L    + +      + +  +        +    S
Sbjct: 63  PEGAMLGLGVRAAAIR---NLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEIQYTRAGS 119

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                +    ++E Y+ + +  I   T      E  Q F     +V              
Sbjct: 120 FNKNNAGQLVTMEGYAVDPAILIPQNTTQVTINESGQVFAKIDGQVALQNVGQLTLANFA 179

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
             +    L                 +       +      + S +  +  I         
Sbjct: 180 NDSGLEPLGNGLYRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVDPVKEITSLITAQRA 239

Query: 220 YTSDGTTLF 228
           +  +   + 
Sbjct: 240 FEMNSKVIQ 248


>gi|226225711|ref|YP_002759817.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca
           T-27]
 gi|226088902|dbj|BAH37347.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca
           T-27]
          Length = 262

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 2/172 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F    +   +    +  S  I       ++  +                  
Sbjct: 93  LDIAIEGEGFFQIQLPSGETAYSRDGSLQISDQGVLVTSAGYALQPPVRIPDDASEFTVS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           A     +    D          +A       LL   +N +       S    +   +   
Sbjct: 153 ATGVVSVRRGNDIQPTEIGRIELARFANPSGLLSLGQNLLAP--TAASGQPVVGYPNDAG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              + ++      V + +E+  +I   ++Y I++K I   D+M Q      +
Sbjct: 211 MGRLQQNSLEGSNVEIVQEMVEMIAAMRAYEINSKAIKTADEMGQIANNIAR 262



 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/143 (9%), Positives = 26/143 (18%), Gaps = 15/143 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENK---- 60
               A         +   I  N+ N +   + R          + V       EN     
Sbjct: 4   ALRAAATGMMAQQTRTEVIAHNLANVNTPGFKRSRAHFEDLLYQTVQGQQVLGENDTQIT 63

Query: 61  ---------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDS 110
                     +           I +           E           +       L+ S
Sbjct: 64  PAIQVGRGTRLAGVQRLHEQGPIEETGRNLDIAIEGEGFFQIQLPSGETAYSRDGSLQIS 123

Query: 111 LESYSKNLSEDILGKTVIDNAEE 133
            +      +   L   V    + 
Sbjct: 124 DQGVLVTSAGYALQPPVRIPDDA 146


>gi|90422390|ref|YP_530760.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18]
 gi|90104404|gb|ABD86441.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18]
          Length = 419

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/414 (10%), Positives = 96/414 (23%), Gaps = 21/414 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------ENVTV 52
           MSL    + A +  +  S   A I  NI N+    Y                    +   
Sbjct: 1   MSLSGALSSAISALSAQSSAMAMISDNIANSQTVGYKTTSASFQALVTSSSSATTYSSGG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT  S +      +L   +SA         F  +   ++      ++             
Sbjct: 61  VTTLSRSNISEQGLLTTTTSATDIGISGNGFFPVTTALTG----GSTLYTRSGSFTIDDS 116

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
            Y  +     L     D    +  + +++  E       A        +     L     
Sbjct: 117 GYLVSSGGAYLLGWRTDADGNITGSADSNNLEPINTAVAATSGSASTETKFALNLPADAA 176

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            +       +           +    +  S     S    N       T+   T   +  
Sbjct: 177 TDATFTSSMSVYDSLGTASSIQVTWTKTGSNTW--SASFGNPTLSSDSTTSTGTTTGSAT 234

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
              N +   +    ++ +  +  G   S+   +    G    L Q          N    
Sbjct: 235 ITFNEDGSLASQSATDISVAWSTGAATSTIALNFGTVGGTDGLTQKASGETTPSINLTSI 294

Query: 293 MARVLIGSFSEKDPIAGN-------SENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            +  L         +  +       S           +                      
Sbjct: 295 ESDGLAYGKLSSIAVGDDGKVNATYSNGETIAIYKIPVATFSAPDQLVAKSNGLYAASAA 354

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
           S  + ++  G+     ++  +  A   D    + +  +    +   A + + V+
Sbjct: 355 SGTAMVQASGTNGAGTIYGGELEASTSDTNQEFSNMISAQQAYSAAAQVMSAVS 408


>gi|289577407|ref|YP_003476034.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus
           Ab9]
 gi|289527120|gb|ADD01472.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus
           Ab9]
          Length = 266

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 43/158 (27%), Gaps = 2/158 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D            +       P     G  +         +++    +     +  
Sbjct: 111 YYTRDGSFKLSADGNTLMLVTADGYPVLDDRGNPIVFDRTEKDISVSPLGVISVKNANGT 170

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        LL    N   +     S         +     + + +  T  V
Sbjct: 171 TREVATLGIYNFVNPQGLLSVGNNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNV 228

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 229 QVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/261 (8%), Positives = 60/261 (22%), Gaps = 25/261 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A +           I  N+ N +   + R                     +  
Sbjct: 1   MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGR 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+                 
Sbjct: 61  PVNMQVGVGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVL------GPDGTVYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S +  +  L        + D    +V +       V  +   + K        +
Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDRGNPIVFDRTEKDISVSPLGVISVKNANGTTREV 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   V    +     + ++  +   Q          +  +       +++ V    
Sbjct: 175 ATLGIYNFVNPQGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEM 234

Query: 224 GTTLFETVPRDINFEKMNSYT 244
              +      +IN + + +  
Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255


>gi|126730134|ref|ZP_01745946.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37]
 gi|126709514|gb|EBA08568.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37]
          Length = 261

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +      +AG      L     N   ++E   S         Q     + + Y   
Sbjct: 164 QAQAQLLGQFTLAGFANAKGLEAIGSNL--FVETEASGPAIQSTPGQDGLGTLRQGYLED 221

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             V+  +E++ LI+ ++ Y +++K+I   D+ML
Sbjct: 222 SSVDAVKEITDLIEAQRGYELNSKVISAADQML 254



 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 28/150 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQMARAGTVNASNGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  + +         +  +    L A    +        +  +            +    
Sbjct: 63  PTGIQLGLGVRPAAVSVQLSQGALSATGGDLDVAIEGNGYLEV------TLPSGQAAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              L+ + E          +   +    + 
Sbjct: 117 DGGLKRTGEGLIVTSDGHPVAPEITIPDDA 146


>gi|254455211|ref|ZP_05068645.1| flagellar basal body FlaE domain protein [Octadecabacter
           antarcticus 238]
 gi|198263495|gb|EDY87768.1| flagellar basal body FlaE domain protein [Octadecabacter
           antarcticus 238]
          Length = 267

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 73/267 (27%), Gaps = 8/267 (2%)

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
               + +   T++FE      N    ++      S          S+   S    G    
Sbjct: 1   MFGTILSGMSTSMFEISVVSNNVANASTTAFRKSSASFSDLYSGASAETVSRTSTGVGSI 60

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           + Q R +       + D +  + +           NS+      +             G+
Sbjct: 61  VEQTRQNTKQGALMERDGVLNMALAGSGMFVTTTPNSDGTLSEALNFTRDGEFALDESGV 120

Query: 335 SETICVNPQYRSNP------SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
             +   +  Y  +         +                +     +   Y +   K    
Sbjct: 121 LRSSTNDIVYGFDGIGGTTLQKIVIPFVNETDTKLTSIEVGSDGLIEATYGEQGPKVAGQ 180

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             VA      +L +       +     S +    +     F  +         VNL  EL
Sbjct: 181 LAVATFANASSLQQL--GLGSFQASQASGAPSFGIAGSEGFGSVQVGKLEASNVNLTTEL 238

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + LI+ +Q ++ S++++     M++ L
Sbjct: 239 TSLIRAQQQFSGSSRILQAYSDMIEKL 265



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/139 (7%), Positives = 29/139 (20%), Gaps = 11/139 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--------- 57
           F    +  + +  + + +  N+ NA    + +     +      +  T            
Sbjct: 2   FGTILSGMSTSMFEISVVSNNVANASTTAFRKSSASFSDLYSGASAETVSRTSTGVGSIV 61

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               +N     L      +                S              +         
Sbjct: 62  EQTRQNTKQGALMERDGVLNMALAGSGMFVTTTPNSDGTLSEALNFTRDGEFALDESGVL 121

Query: 116 KNLSEDILGKTVIDNAEEV 134
           ++ + DI+          +
Sbjct: 122 RSSTNDIVYGFDGIGGTTL 140


>gi|146341904|ref|YP_001206952.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. ORS278]
 gi|146194710|emb|CAL78735.1| Flagellar basal-body rod protein flgG (Distal rod protein)
           [Bradyrhizobium sp. ORS278]
          Length = 262

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 4/185 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +         + +          I   D         T  ++ Q R   +        
Sbjct: 80  SMTQGTLSQTGNDLDLAISGEGFFKILMPDGTYQYTRDGTFQMDNQGRIVTAQGNPVQPT 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                            ++        +       V        L     N         
Sbjct: 140 ISIPQNASGITVNSQGQVSVTLPGSTTSNIIGQLQVTRFINKAGLQPVGNNQFTD--TPS 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S +    + +Q     I++       V++  E+S LI  +++Y ++ K+I   D+M+Q+ 
Sbjct: 198 SGAPQDGIANQDGLGSITQGSLEQANVDVVSEMSELIAAQRAYEMNAKVISAADQMMQST 257

Query: 476 LEGVK 480
               +
Sbjct: 258 TALFR 262



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/241 (7%), Positives = 48/241 (19%), Gaps = 36/241 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  NI N     + ++                          
Sbjct: 3   ALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQSSDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  +              
Sbjct: 63  PVGIDIGGGVKTVGTPRS---MTQGTLSQTGNDLDLAISGEGFFKIL------MPDGTYQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--EL 158
                  +   +        + +  T+           N+  +    +       I  +L
Sbjct: 114 YTRDGTFQMDNQGRIVTAQGNPVQPTISIPQNASGITVNSQGQVSVTLPGSTTSNIIGQL 173

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
           +++          V N+      +S        +Q  +       +   +  V +    +
Sbjct: 174 QVTRFINKAGLQPVGNNQFTDTPSSGAPQDGIANQDGLGSITQGSLEQANVDVVSEMSEL 233

Query: 219 V 219
           +
Sbjct: 234 I 234


>gi|299538001|ref|ZP_07051287.1| flagellar hook-basal body complex protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726583|gb|EFI67172.1| flagellar hook-basal body complex protein [Lysinibacillus
           fusiformis ZC1]
          Length = 279

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 79/279 (28%), Gaps = 5/279 (1%)

Query: 204 IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
            +  +T         + T                E   +  +  + N    D     +  
Sbjct: 4   TMITATNTMGQLQNKLDTISNNIANSNTTGYKTKEASFNELLYQQFNNDKQDRAERQTPV 63

Query: 264 GSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
           G     G +   ++  +      Q    ++      +    + +  + EN          
Sbjct: 64  GIRYGSGAMVGQIKS-NEKQGSLQTTNRDLDLAFTKAKQYFNILMPDGENGTETVYTRQG 122

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSF--LRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
               + L  G    +       +N +   +    +V K  + +   L       +    +
Sbjct: 123 DFYLSPLNNGTVMLVTAEGYPVANVAGQAITLPDTVQKFAVRDGGVLEASYPNGDIIRTN 182

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                   P    +   + +    N             +L   ++     +         
Sbjct: 183 LAVTEFQKPQLMEHVAGSYMGLPNNLAELGYTQAEVLTELVGANRQQIG-MQSGTLEMSN 241

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           VNL +E++ LI+ ++SY  + + +   D+ML  L+ G++
Sbjct: 242 VNLSKEMTELIQTQRSYQFNARAVTLADQMLG-LINGIR 279



 Score = 43.9 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A N       +  +I  NI N++   Y  ++      
Sbjct: 1  MLRTMITATNTMGQLQNKLDTISNNIANSNTTGYKTKEASFNEL 44


>gi|209547928|ref|YP_002279845.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533684|gb|ACI53619.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 262

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 24/141 (17%), Gaps = 34/141 (24%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   + R     +                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    + +    + + F  ++           + 
Sbjct: 63  PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113

Query: 101 THYISKLRDSLESYSKNLSED 121
                    + +     +   
Sbjct: 114 YTRAGAFNKNDQGQLVTIDGY 134



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 4/169 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          I+  D       +     N Q +       +          +
Sbjct: 87  TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTIDGYEVLPGITIPTGS 146

Query: 365 VKNLAGYPDLINHYC--DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        ++      +         +A       L     N   + E   S    + 
Sbjct: 147 TELTISRSGQVSAKLPGAADATVLGQLTLADFVNEAGLQPLGDNL--FQETAASGEAVVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 205 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253


>gi|307266107|ref|ZP_07547652.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918889|gb|EFN49118.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 266

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 2/163 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                    D            +       P     G  +         +++    +   
Sbjct: 106 PDDKVYYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVK 165

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             D   +      +        LL    N   +     S         Q     + + + 
Sbjct: 166 NPDGTTQEVATLGIYNFVNPQGLLSVGSNL--YEPTEASGQPGTRDDFQGRMGKVMQGFL 223

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            T  V + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/261 (8%), Positives = 62/261 (23%), Gaps = 25/261 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++                   I  N+ N +   + R                     +  
Sbjct: 1   MMRALWSVATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+          +      
Sbjct: 61  PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDDKVYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S +  +  L        + D+   +V +       V  +   + K  +     +
Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEV 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   V    +    ++ ++  +   Q          +  +       +++ V    
Sbjct: 175 ATLGIYNFVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEM 234

Query: 224 GTTLFETVPRDINFEKMNSYT 244
              +      +IN + + +  
Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255


>gi|119947175|ref|YP_944855.1| flagellar basal-body rod protein FlgG [Psychromonas ingrahamii 37]
 gi|119865779|gb|ABM05256.1| flagellar basal-body rod protein FlgG [Psychromonas ingrahamii 37]
          Length = 261

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 53/206 (25%), Gaps = 2/206 (0%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
            P   +    ++   +      ++    +V      +      +   +   F      D 
Sbjct: 51  QPGASVDGQNKLPTGLQLGNGVRVVGTQKVYTQGSIQNTSQELDLAILGAGFFQIENSDG 110

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                +     +    Q+ +             +   +V               +  +  
Sbjct: 111 TIMFSRNGQFHLNAEGQFVNTQGLSLIPQVNVPQGATSVSIAIDGKVSAVIPGQTELEQI 170

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +        L+    N         S + +           I +       V + E
Sbjct: 171 GEITLVTFMNPSGLMAKGGNLFS--ATESSGAANELTAGLDGAGIIKQGALEGSNVQVVE 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I  +++Y +S K++   D+ML
Sbjct: 229 EMVDMISTQRAYEMSAKMVSAADEML 254



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 31/155 (20%), Gaps = 33/155 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           + +    ++        +  +I  N+ N +   + R   +                    
Sbjct: 1   MNSALWISKTGMAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSIQKQPGASVDGQN 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V VV  +          +   S  +    L   F  ++           
Sbjct: 61  KLPTGLQLGNGVRVVGTQKV---YTQGSIQNTSQELDLAILGAGFFQIEN------SDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                  +   + E    N     L   V      
Sbjct: 112 IMFSRNGQFHLNAEGQFVNTQGLSLIPQVNVPQGA 146


>gi|146341930|ref|YP_001206978.1| putative flagellar hook protein flgE [Bradyrhizobium sp. ORS278]
 gi|146194736|emb|CAL78761.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. ORS278]
          Length = 601

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/418 (10%), Positives = 100/418 (23%), Gaps = 5/418 (1%)

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L A                     +       +  +  +    +    S   + D 
Sbjct: 189 ATGTLVAAGGLNSADLSNVPLPVGTNFYADATTTGGTAVNKNAANITTSTLLSGGAATDS 248

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +           +            + + A         ++   L+++  V       TA
Sbjct: 249 ITSNFTSGDTITLTGSAGDVVTFSFVSSGASGTQINVGDSVGTLLAKVAAVTGVSPTITA 308

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K   H    +   +    +    +                G  +   +    N      
Sbjct: 309 GKITLHSGSGEDWTMTSASTGFTALGLTSPVALTRTASAGTGIVIGNDLTNFNNETISGG 368

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
              T  S    ++  +  +   S+      K    +                 V      
Sbjct: 369 AVTTYNSAGTPVNVQLRWAKTDSSTLGTGHKDTWNLFYQTNSSATGSTVAWQNVGTNFTF 428

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
             D    +            +             +  +     +  S   +  S +    
Sbjct: 429 ASDGSLTSPTTSSISIPNVVVDGTTLGTVSLNISSGALTQYASTIGSATINNISQNGFAA 488

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
             ++++A     I     S  +      V   + N T    A +   +   ++S    + 
Sbjct: 489 GQLQSVAVNNSGIVTGTFSNGQTINLAQVTLSHFNGTNYLKALDGGAYEATDQSGQAIIG 548

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                    IS         ++ +E + LI  +Q+Y+ + K+I   + M+Q LL  ++
Sbjct: 549 AS-----GKISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR 601



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/446 (8%), Positives = 87/446 (19%), Gaps = 22/446 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVT 54
           M +    N + +  +  S    +I  NI NA    Y    T          +P       
Sbjct: 1   MGIFDAMNTSVSGLSAQSFALQNISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGG 60

Query: 55  QRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDH----YNNSPTHYISKLR 108
             +  K        +   S A         F  +++  S  D+       +        +
Sbjct: 61  VTAFAKATITTQGTVSTSSVATNMAINGDGFFNVQKATSVVDNVPVFTGVTNYTRRGDFQ 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +      N +   L    +D           +            +     +        
Sbjct: 121 LNANGNLINGAGYYLMGVAVDAKTGNATGNVPT----------VLQFANNFVPAQATTAI 170

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +            AS + A   L     L       + +        D            
Sbjct: 171 QYAANLPTQPKTGASGNAATGTLVAAGGLNSADLSNVPLPVGTNFYADATTTGGTAVNKN 230

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                        + T +  SN    D + ++ + G  V    + +        V     
Sbjct: 231 AANITTSTLLSGGAATDSITSNFTSGDTITLTGSAGDVVTFSFVSSGASGTQINVGDSVG 290

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L      + G             +  G                  S             
Sbjct: 291 TLLAKVAAVTGVSPTITAGKITLHSGSGEDWTMTSASTGFTALGLTSPVALTRTASAGTG 350

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             + +  +       +   +  Y                     G     T   + + + 
Sbjct: 351 IVIGNDLTNFNNETISGGAVTTYNSAGTPVNVQLRWAKTDSSTLGTGHKDTWNLFYQTNS 410

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISE 434
                  +  +     +      ++ 
Sbjct: 411 SATGSTVAWQNVGTNFTFASDGSLTS 436


>gi|330953721|gb|EGH53981.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7]
          Length = 244

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 50/234 (21%), Gaps = 8/234 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----ENVTVVTQRSENK 60
            FN   +    A++       NI N     +                      +  S   
Sbjct: 2   SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                   +  S               +      +                E Y  N S 
Sbjct: 62  TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSSN 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             L    +D    VV    +   +++   ++ + +    I+N     S   +   +    
Sbjct: 122 MKLQGYNVDANGSVVTGALS---DLRVNASNLEPKATTTITNSANLNSTTALPTVSTFDA 178

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           T +      +             +         N   +    DG ++ +     
Sbjct: 179 TDTNSYNVKYSTPTYDTQGNAHTLDQYFVKTGTNTWSMYSLMDGRSISDPTSTT 232


>gi|187918167|ref|YP_001883730.1| flagellar basal body rod protein FlgC [Borrelia hermsii DAH]
 gi|119861015|gb|AAX16810.1| flagellar basal-body rod protein FlgC [Borrelia hermsii DAH]
          Length = 152

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M L +  N A         +   I  NI N +        +Y R+  +  
Sbjct: 1  MGLFSSINTASTGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRVIFA 50



 Score = 43.9 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN  EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVEFPNVNAVEEMVDMISASRAYEANSTVINSSKSMFRSALSILQ 151


>gi|312112590|ref|YP_003990906.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1]
 gi|311217691|gb|ADP76295.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1]
          Length = 285

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 8/207 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
             +   D  + +   +  +  RVLI   +    I         L  + G +++   +   
Sbjct: 85  GAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRAGAFYLTPSAGNQNVLMLVTSD 144

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            +  +  N      P+  +D        +            +N    S  +  +      
Sbjct: 145 GNPVLDENNAPIWLPNGYKDIEISDNGTITATAPDGRIMRRVNIGVTSILRPQLLQSAGN 204

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
               +        +   +  N + +    +        +++       V+L  EL+ ++ 
Sbjct: 205 NIWTLPDFNALNVNAADVAVNMTGNLRAQIG-------MTQGALEQSNVDLGTELTDMMI 257

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E+SY ++ + I  +D+ML  L+ G++
Sbjct: 258 TERSYQLNARSISISDQMLG-LINGIR 283



 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          M +L     A N      QQ   I  NI N++   + RR+T     
Sbjct: 1  MHVLRSMITAANTMAQLQQQLDVISNNIANSNTAGFKRRETSFGEL 46


>gi|328948267|ref|YP_004365604.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM
           2489]
 gi|328448591|gb|AEB14307.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM
           2489]
          Length = 264

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 9/221 (4%)

Query: 267 VPKGKIKALLQIRDSVVP---IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
               K+       D+V P      + +   A   I +         +++          +
Sbjct: 46  YQNVKLAGTPATEDTVTPVGHQMGSGVKVGATQRIMTQGSLQATGVDTDVAVVGDGFFRV 105

Query: 324 KDLDNKLCQGISETICVNPQ---YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
           +  D         +  V+       +N   +     + + F     +++    +      
Sbjct: 106 QQYDGSWAYTRDGSFKVDSTGQLVTANGLRVMPEIIMPEGFQLETLSISDGGRVNIKVNG 165

Query: 381 SFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                      +      V L     N   +   N S                   +   
Sbjct: 166 ELEPVEVGQLELYRFPNAVGLENTGDNL--YKVTNASGEPIAGRPGIDGMGITKHKFLEM 223

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++  E+  +I  +++Y  ++K I  +D MLQT     +
Sbjct: 224 SNVSVVNEMVQMIVAQRAYEFNSKAIQTSDNMLQTAAGLKR 264



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 30/152 (19%), Gaps = 33/152 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N       +I  N+ N +   + +                        
Sbjct: 1   MVRSLWNAATGMNGQQMNIDTISNNLSNVNTTGFKQHRAEFEDLLYQNVKLAGTPATEDT 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V   +     M    L A         +   F  +++      +  +
Sbjct: 61  VTPVGHQMGSGVKVGATQRI---MTQGSLQATGVDTDVAVVGDGFFRVQQ------YDGS 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
                    +          +   +   +I  
Sbjct: 112 WAYTRDGSFKVDSTGQLVTANGLRVMPEIIMP 143


>gi|307718596|ref|YP_003874128.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM
          6192]
 gi|306532321|gb|ADN01855.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM
          6192]
 gi|315186391|gb|EFU20151.1| flagellar basal-body rod protein FlgC [Spirochaeta thermophila
          DSM 6578]
          Length = 152

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN--YVRRDTMT 43
          M L    N A         +   I  NI NA      +   + R   + 
Sbjct: 1  MGLFTPINIAATGLTAQRLRMDVISNNIANATTTRTTEGGPFRRSRVVF 49


>gi|222834411|gb|EEE72888.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              +         V+L  +L  LI  +++Y  + + I   D ++QTL+
Sbjct: 1   MGTLQSGSVEESNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLI 48


>gi|326389274|ref|ZP_08210842.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994637|gb|EGD53061.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 266

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 2/163 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                    D            +       P     G  +         +++    +   
Sbjct: 106 PDDKVYYTRDGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVK 165

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             D   +      +        LL    N   +     S         Q     + + + 
Sbjct: 166 NPDGTTQEVATLGIYNFVNPQGLLSVGSNL--YEPTEASGQPGTRDDFQGRMGKVMQGFL 223

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            T  V + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 224 ETSNVQVVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/261 (8%), Positives = 63/261 (24%), Gaps = 25/261 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A             I  N+ N +   + R                     +  
Sbjct: 1   MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+          +      
Sbjct: 61  PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDDKVYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S +  +  L        + D+   +V +       V  +   + K  +     +
Sbjct: 115 DGSFKLSADGNTLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEV 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   V    +    ++ ++  +   Q          +  +       +++ V    
Sbjct: 175 ATLGIYNFVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEM 234

Query: 224 GTTLFETVPRDINFEKMNSYT 244
              +      +IN + + +  
Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255


>gi|186477699|ref|YP_001859169.1| flagellar basal body rod protein FlgG [Burkholderia phymatum
           STM815]
 gi|184194158|gb|ACC72123.1| flagellar basal-body rod protein FlgG [Burkholderia phymatum
           STM815]
          Length = 262

 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 55/179 (30%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          ++  D         +   N Q +   S          
Sbjct: 82  TQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSFQTNSQGQLVTSSGYQVLPAIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                     G   +++              +            A+    + E   S + 
Sbjct: 142 IPQNATSLTIGSDGVVSVTTAGSTATTQIGSLQIATFINPTGLDAKGENLFAETTSSGTP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++          +++ Y     VN+ +EL  +I+ +++Y I++K +  +D+MLQTL + 
Sbjct: 202 NVATPGLNGAGTLNQGYVEASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTLSQM 260



 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/134 (5%), Positives = 26/134 (19%), Gaps = 15/134 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           +      A    N    Q  +I  N+ N     +     +                    
Sbjct: 1   MNRSLYIAATGMNAQQAQMDTISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              + +   +  + +  + L+   +              +           +        
Sbjct: 61  ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120

Query: 108 RDSLESYSKNLSED 121
           + + +      S  
Sbjct: 121 QTNSQGQLVTSSGY 134


>gi|148554187|ref|YP_001261769.1| flagellar basal body rod protein FlgG [Sphingomonas wittichii RW1]
 gi|148499377|gb|ABQ67631.1| flagellar basal-body rod protein FlgG [Sphingomonas wittichii RW1]
          Length = 262

 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 61/196 (31%), Gaps = 2/196 (1%)

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                      Q++  A++      ++     +       +    + D      +  +  
Sbjct: 63  FATGTNLGTGVQINGTAKIQTQGALQETGNPLDMAIQGDGYFQVLLPDGRTGYTRDGNFN 122

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              +    +   +         +   N+   A          ++ +       +A  +  
Sbjct: 123 RSDDGTIVTADGYHLQPQIQIPENTTNLTIAADGTVSATQAGETTSTELGKIELARFSNP 182

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             L     N +   E   S               I +S   +  VN+ EEL  +I+ +++
Sbjct: 183 AGLQAEGNNILT--ETPASGQPQTGPGGIDGRGTIQQSSLESSNVNIVEELVDMIETQRA 240

Query: 458 YNISNKLIMFTDKMLQ 473
           Y +++K+I  TD+MLQ
Sbjct: 241 YEVNSKMISSTDQMLQ 256



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/252 (7%), Positives = 55/252 (21%), Gaps = 18/252 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS  A  + A+   +  + +   I  N+ N +   + R                  + + 
Sbjct: 1   MS-NAALHVARTGLDAQNMRMQVIANNLANVNTTGFKRDRASFETLAYQAMTAPGAASSD 59

Query: 61  NMF---------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           +                    +    +       L                  +      
Sbjct: 60  STKFATGTNLGTGVQINGTAKIQTQGALQETGNPLDMAIQGDGYFQVLLPDGRTGYTRDG 119

Query: 106 KLRDSLESYSKNLSEDILGKTVI--DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               S +          L   +   +N   +    + +    Q     + +  ++E++  
Sbjct: 120 NFNRSDDGTIVTADGYHLQPQIQIPENTTNLTIAADGTVSATQAGETTSTELGKIELARF 179

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                     N+ +    AS                + S +   +  +      ++ T  
Sbjct: 180 SNPAGLQAEGNNILTETPASGQPQTGPGGIDGRGTIQQSSLESSNVNIVEELVDMIETQR 239

Query: 224 GTTLFETVPRDI 235
              +   +    
Sbjct: 240 AYEVNSKMISST 251


>gi|78485810|ref|YP_391735.1| hypothetical protein Tcr_1469 [Thiomicrospira crunogena XCL-2]
 gi|78364096|gb|ABB42061.1| Flagellar basal-body rod protein FlgG [Thiomicrospira crunogena
           XCL-2]
          Length = 263

 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 74/253 (29%), Gaps = 8/253 (3%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L        N       T  +E N +    V     Q +   +    + LQ+   V  I 
Sbjct: 19  LATISNNLANANTYAYKTGRAEFNDLMYQNVRQPGAQATQNEENTFPSGLQLGTGVKAIG 78

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             ++      ++        I G           + +   D       +  +  +  Y  
Sbjct: 79  VQKIHTQGNAMVTDNQLDVMIEGKGFFQALDQDGNIMYTRDGSFEVNQNGDLVTSSGYLV 138

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
            P+      +       +    A  P           +   F   AG+            
Sbjct: 139 EPNINIPLNTTEVFISSDGVVSAKEPGNPQPIAVGQLELATFINPAGLEATGK------- 191

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
              ++E   S + ++          + +    +  VN  EEL  +I+ +++Y +++K I 
Sbjct: 192 -NFYIETLASGAPNVKNPEIEEAGSLLQGALESSNVNTVEELIGMIEAQRTYEMNSKAIS 250

Query: 467 FTDKMLQTLLEGV 479
             D M+Q L   V
Sbjct: 251 AADGMMQYLNNNV 263



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 17/148 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61
           +      A+        + A+I  N+ NA+   Y            +NV     ++    
Sbjct: 1   MNRALYVAKTGLEAQDFRLATISNNLANANTYAYKTGRAEFNDLMYQNVRQPGAQATQNE 60

Query: 62  ----------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                           +  + +H   +A+     L      K    A D   N       
Sbjct: 61  ENTFPSGLQLGTGVKAIGVQKIHTQGNAMVTDNQLDVMIEGKGFFQALDQDGNIMYTRDG 120

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEE 133
               +        S  ++   +      
Sbjct: 121 SFEVNQNGDLVTSSGYLVEPNINIPLNT 148


>gi|190890363|ref|YP_001976905.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
 gi|218516082|ref|ZP_03512922.1| flagellar basal body rod protein FlgG [Rhizobium etli 8C-3]
 gi|190695642|gb|ACE89727.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
          Length = 262

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 24/141 (17%), Gaps = 34/141 (24%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    +        I  NI N +   + R     T                     
Sbjct: 3   ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R          L    + +    + + F  ++           + 
Sbjct: 63  PEGANIGLGVQTSAVR---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTL 113

Query: 101 THYISKLRDSLESYSKNLSED 121
                    + +     +   
Sbjct: 114 YTRAGAFNKNDQGQLVTVDGY 134



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                   +A       L     N   + E   S    +    +  F ++ + Y  +  V
Sbjct: 167 TTVLGQLTLADFVNEAGLQPIGDNL--FQETAASGEAVVGNPDEEGFAYMKQGYLESSNV 224

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +  +E++ LI  +++Y +++K+I   D+M
Sbjct: 225 DPVKEITELISAQRAYEMNSKVITTADEM 253


>gi|188582486|ref|YP_001925931.1| flagellar basal-body rod protein FlgG [Methylobacterium populi
           BJ001]
 gi|179345984|gb|ACB81396.1| flagellar basal-body rod protein FlgG [Methylobacterium populi
           BJ001]
          Length = 263

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 2/189 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
             AR +      +     +            + D  N   +  S  +    Q  +   +L
Sbjct: 76  STARAMSQGPLAQTDKDYDVAIRGEGLFRVRLPDGRNAYTRDGSFDLDAQGQLVTRDGYL 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
            D G        +V   A           +  +      +A     V L     N   ++
Sbjct: 136 LDPGVTVPNTATSVTISATGAVQATLPGQTAPQALGQFQLARFVNKVGLESIGDNL--FV 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E   S      +     F ++ +++     VN   E+S LI  +++Y +++K++   D+M
Sbjct: 194 ETAASGPAITGLPGSEGFGNLQQNWLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQM 253

Query: 472 LQTLLEGVK 480
           L T  +  +
Sbjct: 254 LSTTSQMFR 262



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 46/190 (24%), Gaps = 18/190 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
               A             I  NI N     Y R+                      ++  
Sbjct: 3   ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQ---------------DLLYQN 47

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
           +  + SS   Q  +L +  AL          + +       L  + + Y   +  + L +
Sbjct: 48  LRRSGSSTSDQNTILPAGLALGS---GVKTTSTARAMSQGPLAQTDKDYDVAIRGEGLFR 104

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
             + +         +   + Q      D  +      +    + +T+        T    
Sbjct: 105 VRLPDGRNAYTRDGSFDLDAQGQLVTRDGYLLDPGVTVPNTATSVTISATGAVQATLPGQ 164

Query: 186 DAHDFLDQRD 195
            A   L Q  
Sbjct: 165 TAPQALGQFQ 174


>gi|207108815|ref|ZP_03242977.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1]
          Length = 167

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 31/166 (18%), Gaps = 26/166 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +L       N              NI N +   +             V            
Sbjct: 1   MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60

Query: 52  ----------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                      V   +  K      +               F  +     + D       
Sbjct: 61  AGQNDFSVGLGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFII-----SPDRGITRNF 115

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
               +     +         ++   V + ++   +  +T A +V  
Sbjct: 116 TRDGEFLFDSQGSLVTTGGLVVQGWVRNGSDTGNKGSDTDALKVDG 161


>gi|333008281|gb|EGK27755.1| flagellar basal-body rod protein flgG [Shigella flexneri K-272]
 gi|333019771|gb|EGK39043.1| flagellar basal-body rod protein flgG [Shigella flexneri K-227]
          Length = 163

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 33/150 (22%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +          +S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|168335333|ref|ZP_02693429.1| hypothetical protein Epulo_09785 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 270

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 47/190 (24%), Gaps = 3/190 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            + +    +    D     +                          +  +  +    +  
Sbjct: 82  NLIQTNAPTDLAIDGTGFFAVQADNQVSYTRDGSFKVTTTSDGVIALVTSDGHYVLSTDS 141

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                        +   +             + N     V        L     N   ++
Sbjct: 142 EPITFDENVLSSQITINSYGGVGYKDSETGEDINIADIMVVQFANAAGLEATGDNL--FV 199

Query: 412 EKNRSDSHDLHMKSQVVFNHI-SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           E   S    +  +   +   +    Y     VN+  E+  LI  +++Y +++K I   D 
Sbjct: 200 ETAGSGVPLMESEXPTLTKSLLRAGYLEGSNVNIATEMVNLIVAQRAYELNSKAISTADT 259

Query: 471 MLQTLLEGVK 480
           ML   ++  K
Sbjct: 260 MLGQAVQLKK 269



 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 52/208 (25%), Gaps = 30/208 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A     +      +I  NI N +   + +                        
Sbjct: 1   MMRSLWTAATGMTSQQTHVDTISNNIANVNTVGFKQESVNFKTLLYQNMLPTQQEETTNP 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP- 100
                   V V +    +KN     L   ++          F A++         + S  
Sbjct: 61  MLLQMGHGVRVGSI---SKNFGTGNLIQTNAPTDLAIDGTGFFAVQADNQVSYTRDGSFK 117

Query: 101 -----THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                   I+ +           SE I     + +++  + ++     +  +   D +  
Sbjct: 118 VTTTSDGVIALVTSDGHYVLSTDSEPITFDENVLSSQITINSYGGVGYKDSETGEDINIA 177

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTAS 183
             + +        E T  N  ++   + 
Sbjct: 178 DIMVVQFANAAGLEATGDNLFVETAGSG 205


>gi|157694039|ref|YP_001488501.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032]
 gi|194016453|ref|ZP_03055067.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus
           ATCC 7061]
 gi|157682797|gb|ABV63941.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032]
 gi|194011926|gb|EDW21494.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus
           ATCC 7061]
          Length = 272

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 6/228 (2%)

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            +D            P G       + ++ +   Q  + E  R L  +F         + 
Sbjct: 51  QVDEKNAQVANSRLTPDGLRLGTGTMVNASINSLQGSIKETGRDLDVAFGAPSQYMQVNV 110

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                +  DG   L     +   + +        + +      + + + +    ++    
Sbjct: 111 GGNIRYTRDGSLYLQPGNNRNQVQLVTSEGHPILDENGNEIVLNANFRDI----SIDKNG 166

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
            L     D+     +   V  +N +  L+    N           +      +      +
Sbjct: 167 RLTAISRDNQPNQQVNLGVVQVNNSSALVSEGDNLFSVDGTY-QGALTALNGANRQAIQL 225

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +    T  V++ +EL+ L+  ++SY ++++ I   D+ML  L+  ++
Sbjct: 226 QQGALETSNVDMSKELTDLMTTQRSYQMNSRTITMGDQMLG-LVNTIR 272



 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 78/267 (29%), Gaps = 11/267 (4%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
            N A +  N   +Q   I  NI N++   Y  ++T  +           R +   + +K 
Sbjct: 6   INAAVS-MNEVQKQLDIISNNIANSETTGYRAKNTRFSEL--------IRQQFNQVDEKN 56

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
               +S +    L      +     + +    S       L  +  + S+ +  ++ G  
Sbjct: 57  AQVANSRLTPDGLRLGTGTMVNA--SINSLQGSIKETGRDLDVAFGAPSQYMQVNVGGNI 114

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
                  +      +  +VQ + ++    ++   + +    +   +  D     TA   D
Sbjct: 115 RYTRDGSLYLQPGNNRNQVQLVTSEGHPILDENGNEIVLNANFRDISIDKNGRLTAISRD 174

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                     ++Q  +    +S      +    Y    T L     + I  ++    T  
Sbjct: 175 NQPNQQVNLGVVQVNNSSALVSEGDNLFSVDGTYQGALTALNGANRQAIQLQQGALETSN 234

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIK 273
            + +    D +    +         + 
Sbjct: 235 VDMSKELTDLMTTQRSYQMNSRTITMG 261


>gi|220930463|ref|YP_002507372.1| hypothetical protein Ccel_3100 [Clostridium cellulolyticum H10]
 gi|220000791|gb|ACL77392.1| protein of unknown function DUF1078 domain protein [Clostridium
           cellulolyticum H10]
          Length = 270

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/116 (8%), Positives = 25/116 (21%), Gaps = 19/116 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +           I  N+ N +   Y +                        
Sbjct: 1   MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNDAGK 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             + +        S  +N  +      SS +      + F  +        +  + 
Sbjct: 61  PVNLQVGHGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFTIMGPQGTVQYTRDG 116



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 5/217 (2%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
              GK   L     +VV       +        S  +          + G          
Sbjct: 56  NDAGKPVNLQVGHGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFTIMGPQGTVQYTRD 115

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +       + +               G  +      N+  L+  P     Y D+   + 
Sbjct: 116 GSFKLSITEDGMKKLTTADGYAVLDNSGEEILFDPEVNISELSVSPRGEMSYKDAEGVSV 175

Query: 387 IFDPVAG---INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
             D   G         L     N       + +       + +   + + + +  +  V 
Sbjct: 176 PMDQTIGMVIFPNKYALEAVGNNLYS--SNSATGEPVQVSEDENAKSIMKQGFLESSNVQ 233

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +E+  LI  +++Y +S+K I  +D MLQ      +
Sbjct: 234 VVDEMVKLIVAQRAYEVSSKAIQSSDDMLQIANNLRR 270


>gi|323139654|ref|ZP_08074696.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC
           49242]
 gi|322395086|gb|EFX97645.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC
           49242]
          Length = 262

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/181 (8%), Positives = 38/181 (20%), Gaps = 28/181 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-------------------IS 46
               A    +   Q    I  NI N +   + R     T                     
Sbjct: 3   ALAIAATGMSAQQQNIEVIAHNIANINTTGFKRSRAEFTDLLYQTDRLQGVSNRGRDATV 62

Query: 47  PENVTVV-TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P+        R+       +   L    +        + +  +          N +    
Sbjct: 63  PQGAQFGLGVRAAAVRSLQQQGPLTNTGNMYDLSMNGRGWFQIL------GSDNETLYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 +       +   +L  T+      +  + + S      +      +   +++  
Sbjct: 117 AGSFSTNNNGQLVTVDGYLLTPTITIPNNTLNVSVSQSGIVSAIVAGQTQPQQIGQLTVA 176

Query: 164 R 164
            
Sbjct: 177 N 177



 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 2/178 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  +       +      D +    +  S +   N Q  +   +L           
Sbjct: 87  TNTGNMYDLSMNGRGWFQILGSDNETLYTRAGSFSTNNNGQLVTVDGYLLTPTITIPNNT 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            NV               +  +      VA       L     N   + E   S    + 
Sbjct: 147 LNVSVSQSGIVSAIVAGQTQPQQIGQLTVANFANESGLEALGGNL--FRETYASGQPIVG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +     F  I++ Y  +  V+  +EL  LI  ++++ +++K+I   D+M  T+ +G++
Sbjct: 205 IPGDPGFGVINQGYLESSNVDPVKELVSLISAQRAFELNSKVIQAADEMAGTISKGIR 262


>gi|291334316|gb|ADD93977.1| flagellar basal body rod protein FlgG [uncultured marine bacterium
           MedDCM-OCT-S09-C247]
          Length = 257

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           +   +      +A  +    L     N   ++    S            F  + + Y  +
Sbjct: 160 NDIAQEVGQISIANFSNPRGLTPIGENF--FVPSAESGVAQEGAPLDGGFGKVLQGYVES 217

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             VN+ ++L  +I+ +++Y +S+K I   D+M+Q
Sbjct: 218 SNVNVVQQLVDMIETQRAYEVSSKSITAVDEMMQ 251



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 38/160 (23%), Gaps = 33/160 (20%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------------- 45
            + A+   N    +   I  N+ N +   + R                            
Sbjct: 1   MHVAKTGLNAQQYKMQVIANNLANVNTTGFKRDRANFESLFYQIVKTAGAQTADDTALTS 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V VV+ +          L +  +++      Q F        A          
Sbjct: 61  PLAVGTGVKVVSTQKL---FTQGGLVSTDNSLDLAIDGQGFFQ------ALLPDGRVGYT 111

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
               L  + E      S  +L   +   A+    N +T+ 
Sbjct: 112 RSGILSRNAEGVLTTTSGYVLQPQIQLPADATSINVSTTG 151


>gi|167645396|ref|YP_001683059.1| flagellar basal body rod protein FlgG [Caulobacter sp. K31]
 gi|167347826|gb|ABZ70561.1| flagellar basal-body rod protein FlgG [Caulobacter sp. K31]
          Length = 262

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 2/176 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                  +       F+   +   +    +  + +     Q  +   +    G       
Sbjct: 87  TMTNNEFDVAIQGKGFLQILLPSGETAYTRAGNFSTNDQGQIVTEDGYTVQPGITIPANA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                       +    +   +      +A       L     N   ++E   S + ++ 
Sbjct: 147 TATIISKTGLVQVKMDGNPAPQTVGQLELANFMNEGGLEAIGNNM--YMETAASGAANIA 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              Q  F  + ++Y+    V+   E++ LI  +++Y +++K+I   D+MLQT    
Sbjct: 205 APGQQGFGTLLQNYTEASNVDSVSEITSLIVAQRAYEMNSKVITTADQMLQTTSNL 260



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/184 (5%), Positives = 31/184 (16%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A             I  NI N +   + R                           
Sbjct: 3   ALRTAATGMAAQQLNVEVISNNIANMNTVGFKRGRAEFQDLLYQTIERAGAQSSGDGNVV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +    ++          ++        + F  +            + 
Sbjct: 63  PTGVQVGGGVKTGSVYRIHEQ---GTPTMTNNEFDVAIQGKGFLQIL------LPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +          +   +   A       + +     K+  +   +   ++
Sbjct: 114 YTRAGNFSTNDQGQIVTEDGYTVQPGITIPANATATIISKTGLVQVKMDGNPAPQTVGQL 173

Query: 161 SNLR 164
               
Sbjct: 174 ELAN 177


>gi|291540627|emb|CBL13738.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4]
          Length = 272

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 79/272 (29%), Gaps = 5/272 (1%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                         D  +   +    + +++      +     I       +  +     
Sbjct: 6   YTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEEKPISA 65

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +  +   +    S+         E A     S      + G           D +  ++ 
Sbjct: 66  QVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFVWSVNA 125

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +           +N       G  ++K + +     GY +    Y D      +F
Sbjct: 126 GGTLTLCTNEGYPVLDSNNQPINLPAGISAEKVIVSENGKMGYTNAAGTYVDMNQTIGLF 185

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                 N    L +   N +  +     ++ +    + +  + + + Y     V + +E+
Sbjct: 186 ----QFNNPGGLEKTGTNLLA-VTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADEM 240

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             LI  +++Y +++K I  +D+ML+      +
Sbjct: 241 VNLIIAQRAYQLNSKAITTSDEMLEQANNLKR 272



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 27/125 (21%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49
           ++     A            +I  N+ N +   Y +                  + + E 
Sbjct: 1   MMRALYTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEE 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLR 108
             +  Q      +          ++        F    +   A    +  +         
Sbjct: 61  KPISAQVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFV 120

Query: 109 DSLES 113
            S+ +
Sbjct: 121 WSVNA 125


>gi|188579867|ref|YP_001923312.1| flagellar basal body rod protein FlgG [Methylobacterium populi
           BJ001]
 gi|179343365|gb|ACB78777.1| flagellar basal-body rod protein FlgG [Methylobacterium populi
           BJ001]
          Length = 262

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 2/172 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       +        +    +  S       Q  +   +  D   +       V   
Sbjct: 93  LDLAVNGRGYFQITSPAGEINYTRAGSFNKNNAGQLVTMEGYAVDPAILIPANTTQVTIN 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                          +N     +A       L         + E   S +  +     V 
Sbjct: 153 ESGQVFAKTDGQVALQNIGQLTLANFANESGLEPLGNGL--YRETPASGAPVVGNPGDVS 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  + + Y     V+  +E++ LI  ++++ +++K+I   D+M  T+ +G++
Sbjct: 211 YGKLQQGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/249 (8%), Positives = 48/249 (19%), Gaps = 29/249 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A    +        I  NI N +   +       T                     
Sbjct: 3   ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGAPNQAGQEAV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99
                    V     R          L    + +      + +  +       ++    S
Sbjct: 63  PEGAMLGLGVRAAAIR---NLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEINYTRAGS 119

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                +    ++E Y+ + +  I   T      E  Q F  +  +V              
Sbjct: 120 FNKNNAGQLVTMEGYAVDPAILIPANTTQVTINESGQVFAKTDGQVALQNIGQLTLANFA 179

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
             +    L                 +       +      + S +  +  I         
Sbjct: 180 NESGLEPLGNGLYRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVDPVKEITSLITAQRA 239

Query: 220 YTSDGTTLF 228
           +  +   + 
Sbjct: 240 FEMNSKVIQ 248


>gi|323704841|ref|ZP_08116418.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535767|gb|EGB25541.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 266

 Score = 62.4 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 2/158 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D      + +           P     G  ++        +++    +     D  
Sbjct: 111 YYTRDGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNSDGT 170

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            ++     +        LL+   N   +     S         Q    ++ + +  T  V
Sbjct: 171 QQDVATLGIYNFQNPDGLLDKGDNL--YEATAASGDPGTRDDFQGRMGNVRQGFLETSNV 228

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  E+  +I  +++Y +++K I   D ML       +
Sbjct: 229 QVVNEMVNMIAAQRAYELNSKAIQAADDMLSIANNLRR 266



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/262 (8%), Positives = 66/262 (25%), Gaps = 25/262 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A +  N        I  N+ N +   + R                     +  
Sbjct: 1   MIRALWSAASGMNAQQLNVDVISNNLANVNTTAFKRDRAEFQDLIYQTLQTEDVNGGQGK 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+           N+    
Sbjct: 61  PVNMQVGVGVRPSAIVKDFSEGSLQETDNPLDVALDGEGFFAVL------GPDGNTYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S++  +  L+       + D    +  +       +  +   + K  +    ++
Sbjct: 115 DGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNSDGTQQDV 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                      D +  K  + ++A                +  +       +++ V    
Sbjct: 175 ATLGIYNFQNPDGLLDKGDNLYEATAASGDPGTRDDFQGRMGNVRQGFLETSNVQVVNEM 234

Query: 224 GTTLFETVPRDINFEKMNSYTV 245
              +      ++N + + +   
Sbjct: 235 VNMIAAQRAYELNSKAIQAADD 256


>gi|219685599|ref|ZP_03540415.1| flagellar hook-basal body complex protein [Borrelia garinii Far04]
 gi|219672877|gb|EED29900.1| flagellar hook-basal body complex protein [Borrelia garinii Far04]
          Length = 282

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WVDTKTSGKAQEIDI--SLRPKIETGALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 23/153 (15%), Gaps = 40/153 (26%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +       +   +  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L   S+ +             +    
Sbjct: 61  PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTSNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                              E      S   +  
Sbjct: 111 IQTSYGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|209963565|ref|YP_002296480.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW]
 gi|209957031|gb|ACI97667.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW]
          Length = 261

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 4/209 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
                    +     QL    +    S          +EN   + +      +       
Sbjct: 52  GSESSDQDTIVPAGIQLGLGVKPAAVSRMHGQGPLTPTENDYDVALDGRGYFVITLPNGD 111

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            + T   N Q     + +   G      +    N        N    +F          G
Sbjct: 112 TAYTRAGNFQLSPEGTIVTVDGYTVSPNITVPDNTRKVAINRNGEVLAFIDGQTEPENVG 171

Query: 394 INTNVTLLEYAR----NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                T +  A         + E   S    L +  Q+ +  I + Y     VN+ +E++
Sbjct: 172 QFEVATFVNEAGLEAMGDNLFRETPASGIPILGIPGQLGYGGIRQGYVEAANVNIVQEIT 231

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            LI  +++Y ++++++   D+ML T+ + 
Sbjct: 232 SLISAQRAYEMNSRVVEAGDQMLNTVTQM 260



 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 10/47 (21%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
            N A             I  NI N +   + R             V
Sbjct: 3  TLNIAATGMMAQQLNVEVISNNIANLNTVGFKRSRAEFQDLMYQAQV 49


>gi|213421404|ref|ZP_03354470.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 197

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 21/150 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +++    A+   +        I  N+ N     + R+  +                   T
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P  + + T       +  + LH+  +              +           S     
Sbjct: 61  TLPSGLQIGTGVR---PVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              +              +   +   A  +
Sbjct: 118 GSFQVDQNGQLVTAGGFQVQPAITIPANAL 147


>gi|89056684|ref|YP_512135.1| flagellar basal body rod protein FlgG [Jannaschia sp. CCS1]
 gi|88866233|gb|ABD57110.1| flagellar basal-body rod protein FlgG [Jannaschia sp. CCS1]
          Length = 261

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 59/206 (28%), Gaps = 8/206 (3%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
              +   D  V     Q+    R    + + +    G +     + I             
Sbjct: 51  AGAINASDGTVVPAGVQIGLGVRPAAVTVTWEQGTLGATGGQLDVAIEGRGYLEVTLPSG 110

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T     Q   +   + + G      +    +        N    +  +  I   + 
Sbjct: 111 DNAYTRDGALQRTGDGLIVTNDGFEVNPGITIPDDAQEITINANGEVFASFRGEIQPQLL 170

Query: 393 G------INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
           G         +  L     N   +LE   S +       +       + Y     V+   
Sbjct: 171 GQLNMVRFTNDNGLEAIGSNL--FLETGASGAPLAGDPGEDGMGTFRQGYVEQSSVDAVR 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E++ LI+ ++ Y ++ K++   D++L
Sbjct: 229 EITDLIEAQRGYELNAKVLTAADQIL 254



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 50/245 (20%), Gaps = 23/245 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
             + A    +    +   I  NI N     Y  R                          
Sbjct: 3   ALDIAATGMSAQQLRVDVISNNIANMSTTGYSPRRADFADLHYQQMVRAGAINASDGTVV 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTH 102
           P  V +                 L A    +      + +  +      + +  + +   
Sbjct: 63  PAGVQIGLGVRPAAVTVTWEQGTLGATGGQLDVAIEGRGYLEVTLPSGDNAYTRDGALQR 122

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               L  + + +  N    I             + F +   E+Q         +     N
Sbjct: 123 TGDGLIVTNDGFEVNPGITIPDDAQEITINANGEVFASFRGEIQPQLLGQLNMVRFTNDN 182

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
               +     +         +     D +        + S +  +  I         Y  
Sbjct: 183 GLEAIGSNLFLETGASGAPLAGDPGEDGMGTFRQGYVEQSSVDAVREITDLIEAQRGYEL 242

Query: 223 DGTTL 227
           +   L
Sbjct: 243 NAKVL 247


>gi|326202442|ref|ZP_08192311.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM
           2782]
 gi|325987560|gb|EGD48387.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM
           2782]
          Length = 270

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 50/217 (23%), Gaps = 27/217 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A +           I  N+ N +   Y +                   +    
Sbjct: 1   MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNGGGK 60

Query: 50  ------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-- 101
                        S  +N  +       S +      + F  +        +  +     
Sbjct: 61  PVNLQVGHGTVVSSTIRNFENGTPEQTGSTLDFAIDGEGFFTIMGPQGTVKYTRDGSFKL 120

Query: 102 -----HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                           +   N   +IL    +  +E  V      + +  +  +    + 
Sbjct: 121 SITEDGMKKLTTSDGYAVLDNSGGEILFDPEVKTSELSVSPRGEMSYKNAEGVSVPMDQT 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
              ++   ++  E  V N+     +A+        D+
Sbjct: 181 IGMVTFPNKYALE-AVGNNLYSSNSATGEPLQVSEDE 216



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 5/217 (2%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
              GK   L     +VV       +       GS  +          + G          
Sbjct: 56  NGGGKPVNLQVGHGTVVSSTIRNFENGTPEQTGSTLDFAIDGEGFFTIMGPQGTVKYTRD 115

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
            +       + +               GG +          L+  P     Y ++   + 
Sbjct: 116 GSFKLSITEDGMKKLTTSDGYAVLDNSGGEILFDPEVKTSELSVSPRGEMSYKNAEGVSV 175

Query: 387 IFDPVAG---INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
             D   G         L     N       + +       + +   + + + +  +  V 
Sbjct: 176 PMDQTIGMVTFPNKYALEAVGNNLYS--SNSATGEPLQVSEDENAKSIMKQGFLESSNVQ 233

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +E+  LI  +++Y +S+K I  +D MLQ      +
Sbjct: 234 VVDEMVKLIVAQRAYEVSSKAIQSSDDMLQIANNLRR 270


>gi|229917022|ref|YP_002885668.1| hypothetical protein EAT1b_1296 [Exiguobacterium sp. AT1b]
 gi|229468451|gb|ACQ70223.1| protein of unknown function DUF1078 domain protein [Exiguobacterium
           sp. AT1b]
          Length = 260

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 55/178 (30%)

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
             +   F+       +      L  +     +D     G++ +  +        + +   
Sbjct: 75  ADITQQFNIGQVRTTDRGLDVFLKASRQFFVVDTPNGVGVTRSGNMQLSVGDETTLVDVN 134

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G+       N   +           D      +            +     + +  L  N
Sbjct: 135 GNPLLGDDGNPITMPNDATNQRIRQDGVVVASVNGVEQEFGRLDIVEVRNTSELRPLGDN 194

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +       + + N + E    +  V+L +E++ +   +++Y ++++ +  +D+M+
Sbjct: 195 VFAADLETEVDRPLGNLLIEGTLESSNVDLTKEMTDMTITQRAYQMNSRAMSMSDQMM 252



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 27/135 (20%), Gaps = 22/135 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               + N  +   +Q      NI N D   + R+                         +
Sbjct: 3   SIYNSVNSLSQLQRQLDVTGHNIANVDTVGFKRQQGHFASLLSQAYNNQPRPEFEVGRDT 62

Query: 47  PENVTVVT---QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  + +          +      +      +           + +  +      +     
Sbjct: 63  PNGIRIGVGGHVADITQQFNIGQVRTTDRGLDVFLKASRQFFVVDTPNGVGVTRSGNMQL 122

Query: 104 ISKLRDSLESYSKNL 118
                 +L   + N 
Sbjct: 123 SVGDETTLVDVNGNP 137


>gi|296135673|ref|YP_003642915.1| fagellar hook-basal body protein [Thiomonas intermedia K12]
 gi|295795795|gb|ADG30585.1| fagellar hook-basal body protein [Thiomonas intermedia K12]
          Length = 414

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/479 (9%), Positives = 100/479 (20%), Gaps = 71/479 (14%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
           + F  A +    AS     +  NI NA+   +   +     S       T     +    
Sbjct: 2   STFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADSYAAAIAGTSPQYGQVGIG 61

Query: 65  KVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +   +    Q  +  +   L            ++   +      + +     Y  + +
Sbjct: 62  TSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDAA 121

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L  T   +                                          +      
Sbjct: 122 GGQLIGTPAVSG---------------------------------VLTGGSGPLQITTTT 148

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                  +       +     IS     +     + +     +   +L  +      +  
Sbjct: 149 LAPKATTSGTLGLNLNASSTPISSGTTFNINDPTSYNYSTTATVYDSLGTSHLLTTYYAL 208

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            +  T   + N  +      SS  G                         L         
Sbjct: 209 TSGSTDGQKWNVYYSVDGTTSSGSGIT-------------------SGGPLTIQFTSTGA 249

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                    G      G   +    +         +  +       S+   L +      
Sbjct: 250 ISGTASGTIGPLSWADGASGSTIALNFAGSTNYNATSVVNSLTTDGSSVGQLSNLSIDPS 309

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                         +   Y +  +       +        L     N   ++    S   
Sbjct: 310 GV------------VFGRYTNGQSAKLGLITLTNFKAPQGLQRLGNNY--FVPTYASGQP 355

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                       +  S      V+L  +L  LI  +Q+Y  + + I   ++++QTLL  
Sbjct: 356 LTGQPGGGGLGVLQSSAVEQSNVDLSSQLVNLIVAQQAYQANAQTIKTQNQVVQTLLSL 414


>gi|304317903|ref|YP_003853048.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779405|gb|ADL69964.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 266

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 2/158 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D      + +           P     G  ++        +++    +     D  
Sbjct: 111 YYTRDGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNPDGT 170

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            ++     +        LL    N   +     S +       Q    ++ + +  T  V
Sbjct: 171 QQDIATLGIYNFQNPNGLLNKGNNL--YEATAASGAPGTRDDFQGKMGNVVQGFLETSNV 228

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  E+  +I  +++Y +++K I   D ML       +
Sbjct: 229 QVVNEMVNMIAAQRAYELNSKAIQAADDMLSIANNLRR 266



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/262 (8%), Positives = 67/262 (25%), Gaps = 25/262 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           ++     A +  N        I  N+ N +  ++ R                        
Sbjct: 1   MIRALWSAASGMNAQQLNVDVISNNLANVNTTSFKRDRAEFQDLMYQTLQTEDVNAGQGK 60

Query: 51  -----TVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+           N+    
Sbjct: 61  PVNMQVGVGVRPSAIVKDFSEGSLQETDNPLDVALDGEGFFAVL------GPDGNTYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S++  +  L+       + D    +  +       +  +   + K  +    ++
Sbjct: 115 DGSFKLSVDQNTATLTTADGYPVLDDGGNPITFDSTQKDISISPLGVISVKNPDGTQQDI 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                      + +  K  + ++A               ++  +       +++ V    
Sbjct: 175 ATLGIYNFQNPNGLLNKGNNLYEATAASGAPGTRDDFQGKMGNVVQGFLETSNVQVVNEM 234

Query: 224 GTTLFETVPRDINFEKMNSYTV 245
              +      ++N + + +   
Sbjct: 235 VNMIAAQRAYELNSKAIQAADD 256


>gi|172057890|ref|YP_001814350.1| flagellar basal-body rod protein FlgC [Exiguobacterium sibiricum
          255-15]
 gi|171990411|gb|ACB61333.1| flagellar basal-body rod protein FlgC [Exiguobacterium sibiricum
          255-15]
          Length = 132

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISPENV 50
          MS+ + F+ +         +  ++  NI NA              Y R+  +   +   V
Sbjct: 1  MSMFSGFHTSATGLTAQRLRLDTVSANIANAQTTRGELVNGEWQPYARKLAVLKETGSGV 60

Query: 51 TVVTQRSENKNM 62
          TV   R + +  
Sbjct: 61 TVSEIRKDQEPF 72


>gi|327478811|gb|AEA82121.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri DSM
           4166]
          Length = 261

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/185 (5%), Positives = 41/185 (22%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           + +    ++       +  A++  N+ N +   +     +                    
Sbjct: 1   MNSALWVSKTGLAAQDKAMATVANNLANVNTNGFKSDRAVFEDLFYVIEKQPGAQADEIN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + +            +  +      +    + + F  ++          +   
Sbjct: 61  TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIVGRGFFQVE------APNGDIFY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               + + + E    N     L   +            +       +  D       +I+
Sbjct: 115 TENGQFQLNAEGMMVNAQGLPLNPAIEVPEGSTGFTVGSDGIVTAVLAGDTLPSELGQIT 174

Query: 162 NLRRF 166
            +   
Sbjct: 175 LVNFT 179



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 46/178 (25%), Gaps = 4/178 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ-YRSNPSFLRDGGS 356
           + +           +          ++  +  +    +    +N +    N   L    +
Sbjct: 80  VFTEGSIQTTGQPMDLAIVGRGFFQVEAPNGDIFYTENGQFQLNAEGMMVNAQGLPLNPA 139

Query: 357 VSKKFLWNVKNLAGYPDLINHYC-DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +          +     +      D+         +        L     N   + E   
Sbjct: 140 IEVPEGSTGFTVGSDGIVTAVLAGDTLPSELGQITLVNFTNPGGLEALGGNL--YRETVA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           S      +  +     + +       V + E +  +I ++++Y  + K++     M Q
Sbjct: 198 SGEPVEGVPGEEGLGQLKQGVLEGSNVQVVEAMVAMIAIQRAYEANAKVLDAASGMQQ 255


>gi|254462012|ref|ZP_05075428.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium
           HTCC2083]
 gi|206678601|gb|EDZ43088.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 261

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +  +      +AG      L     N   ++E   S    +          + + Y   
Sbjct: 164 TAQAQLLGQFTLAGFTNAKGLEAIGSNL--FMETEASGPSQVTTPGTDGLGTLRQGYLED 221

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             V+   E++ LI+ ++ Y ++ K+I   D+ML
Sbjct: 222 SSVDAVREVTELIEAQRGYELNAKVITAADQML 254



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 27/139 (19%), Gaps = 28/139 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVEVISNNLANMSTTGYNTRRAEFADLHYQQMSRAGTINASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +         +  +    L A +S +      Q +  +            S    
Sbjct: 63  PTGVQLGLGVRPSSVSVYLAQGSLSATNSDLDVAIDGQGYLKV------TMPSGASAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDI 122
              L+ + E          
Sbjct: 117 DGALKRNAEGLIVTNDGYP 135


>gi|51599026|ref|YP_073214.1| flagellar hook-basal body complex protein [Borrelia garinii PBi]
 gi|51573597|gb|AAU07622.1| flagellar hook-basal body complex protein [Borrelia garinii PBi]
          Length = 282

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WVDTKTSGKAQEIDI--SLRPKIETGALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 24/153 (15%), Gaps = 40/153 (26%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +       +   +  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERHKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L   S+ +             +    
Sbjct: 61  PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTSNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               +              E      S   +  
Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|219684370|ref|ZP_03539314.1| flagellar hook-basal body complex protein [Borrelia garinii PBr]
 gi|219672359|gb|EED29412.1| flagellar hook-basal body complex protein [Borrelia garinii PBr]
          Length = 282

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WVDTKTSGKAQEIDI--SLRPKIETGALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.0 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/153 (6%), Positives = 24/153 (15%), Gaps = 40/153 (26%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +       +   +  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L   S+ +             +    
Sbjct: 61  PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTSNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               +              E      S   +  
Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|254994099|ref|ZP_05276289.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064]
          Length = 208

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 34/152 (22%), Gaps = 14/152 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58
           +      A +  N   Q  +    NI NA+   Y ++  +       +          + 
Sbjct: 1   MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQ----------SFEALKEMMSADDHYNNSPTHYISKLR 108
              M         + +                 + +     ++ D+   N          
Sbjct: 61  TNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
            S  +Y        +     D    V+     
Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQ 152


>gi|254460576|ref|ZP_05073992.1| flagellar basal body FlaE domain protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677165|gb|EDZ41652.1| flagellar basal body FlaE domain protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 267

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 76/267 (28%), Gaps = 8/267 (2%)

Query: 215 NDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
               + +   T++FE      N     +      +          S    S    G    
Sbjct: 1   MFGTILSGMSTSMFEISVVSNNVANAGTTAFRKSNASFADLYNGTSPETVSRTATGTGSI 60

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           + Q R S       + D +  + +           NS+  P   ++       +    G+
Sbjct: 61  VEQTRQSAKQGGMMERDGVLNMALAGNGMFVTTTPNSDGTPSEVLSFTRDGEFSLDENGV 120

Query: 335 SETICVNPQYRSNP------SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
             +   +  Y  +         L                +    +++  Y     +    
Sbjct: 121 LRSSKNDIVYGYDGLGGRGMQQLVVPFQNEDGAKLTALEVGSDGEMLATYGSEDPRLVGQ 180

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +A       + +       + E   S    L +     F  I      +  V+L  E+
Sbjct: 181 IAIALFPNTTAMRQM--GMNRFKESRESGELVLGVAGSEGFGSIQTGALESSNVDLTTEM 238

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +I+ +Q ++ S++++     M++ L
Sbjct: 239 TSMIRAQQQFSGSSRILQTYTDMIEKL 265



 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%), Gaps = 11/141 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----------VTVVTQ 55
           F    +  + +  + + +  N+ NA    + + +                     T    
Sbjct: 2   FGTILSGMSTSMFEISVVSNNVANAGTTAFRKSNASFADLYNGTSPETVSRTATGTGSIV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               ++     +      +                S              +         
Sbjct: 62  EQTRQSAKQGGMMERDGVLNMALAGNGMFVTTTPNSDGTPSEVLSFTRDGEFSLDENGVL 121

Query: 116 KNLSEDILGKTVIDNAEEVVQ 136
           ++   DI+          + Q
Sbjct: 122 RSSKNDIVYGYDGLGGRGMQQ 142


>gi|146305252|ref|YP_001185717.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp]
 gi|145573453|gb|ABP82985.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp]
          Length = 261

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 46/178 (25%), Gaps = 4/178 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + +           +          ++  +  +    S    +N +     +        
Sbjct: 80  VFTEGSIQTTGQPMDLAIIGNGFFQVEAPNGDIYYTESGQFQLNAEGVIVNAQGLPLVPG 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNF--IFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            +    + +   G   ++                 +A       L     N   + E   
Sbjct: 140 IEVPAGSSRFTVGSDGIVTAVMAGETLPVELGQITLANFANPGGLEALGGNL--YRETVA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           S         +    ++ +       V + E +  +I ++++Y  + K++     M Q
Sbjct: 198 SGEPVEGTPGEDGLGNLKQGVLEGSNVQVVEAMVNMIAIQRAYEANAKVLDAASGMQQ 255



 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/152 (5%), Positives = 34/152 (22%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           + +    ++       +  +++  N+ N +   +     +                    
Sbjct: 1   MSSALWVSKTGLAAQDKAMSAVANNLANVNTTGFKSDRVVFEDLFYAIELQPGAQADQVN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + +            +  +      +    +   F  ++          +   
Sbjct: 61  TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGNGFFQVE------APNGDIYY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
               + + + E    N     L   +   A  
Sbjct: 115 TESGQFQLNAEGVIVNAQGLPLVPGIEVPAGS 146


>gi|225159023|ref|ZP_03725333.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2]
 gi|224802402|gb|EEG20664.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2]
          Length = 261

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 66/240 (27%), Gaps = 9/240 (3%)

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +    +   G   SS   S      ++A   +  S       QL  ++           
Sbjct: 25  GNNIANVNTTGYKSSSASYSDSFSNTLRAATSVDSSRQTGTGVQLAGISTNYTQGSISTT 84

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK-----K 360
            ++ +       +      +   +           +  Y  N S LR   S S       
Sbjct: 85  GVSTDLAISGEGYFIVQDPNSGAQYITRDGSFKFDDNGYLVNASGLRVLDSASAPIQIPT 144

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                K+++    +                +A +     L++   N   +     +    
Sbjct: 145 TGVQSKSISSNGAVSYVDTAGVTHTVATVGLAQVADQAKLMKEGGNLYDYSATTVA---- 200

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +                  V+L  EL  +I ++ S+  + +++  +D +   ++   +
Sbjct: 201 IGIPGSNGTGAFKTYSLELSKVDLTAELPNMITMQGSFQANARMVTVSDTIFDDIVNMKR 260



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 43/182 (23%), Gaps = 19/182 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTMTTIS 46
           M+L+     + +  +N ++    I  NI N +   Y               R  T    S
Sbjct: 1   MALIGTLTSSVSALSNFTEGLEVIGNNIANVNTTGYKSSSASYSDSFSNTLRAATSVDSS 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
            +  T V     + N     +     +       + +  +++      +           
Sbjct: 61  RQTGTGVQLAGISTNYTQGSISTTGVSTDLAISGEGYFIVQD-----PNSGAQYITRDGS 115

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +     Y  N S   +  +     +       + +       +  D             
Sbjct: 116 FKFDDNGYLVNASGLRVLDSASAPIQIPTTGVQSKSISSNGAVSYVDTAGVTHTVATVGL 175

Query: 167 LS 168
             
Sbjct: 176 AQ 177


>gi|307945666|ref|ZP_07661002.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4]
 gi|307771539|gb|EFO30764.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4]
          Length = 260

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 3/182 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR-SNPSFLRDGGS 356
           I S    +    + +          I+  D         +   +P               
Sbjct: 80  IMSQGAVEQTGKDLDLAVRGEGFFQIEMPDGTTAYTRDGSFERDPNGTLVTVDGYTVVPG 139

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
           ++         ++    +          N     +A       L     N   + E   S
Sbjct: 140 ITIPEDSRNITISTDGTVSAVDAGGATVNLGQIQLARFVNKAGLEAIGDNL--FYETEAS 197

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               +       F ++ + +     V+   E++ LI  +++Y +++++I   D+M  T  
Sbjct: 198 GPAQVDNPGGNGFGNVQQYFLEMANVDAVTEIADLISAQRAYEMNSRVIKAADEMYSTTS 257

Query: 477 EG 478
             
Sbjct: 258 NL 259



 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 23/134 (17%), Gaps = 16/134 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50
             + A        +    I  N+ N     Y R+                   + +   V
Sbjct: 3   ALHIAATGMKAQERNVEVISNNVANLRTTGYKRQRVDFQDLMYQNLRRAGSETSTAGTIV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q      +          A+ Q           E     +     +          
Sbjct: 63  PTGVQIGSGVKVAATSRIMSQGAVEQTGKDLDLAVRGEGFFQIEMPDGTTAYTRDGSFER 122

Query: 110 SLESYSKNLSEDIL 123
                   +    +
Sbjct: 123 DPNGTLVTVDGYTV 136


>gi|260428875|ref|ZP_05782852.1| flagellar basal-body rod protein FlgC [Citreicella sp. SE45]
 gi|260419498|gb|EEX12751.1| flagellar basal-body rod protein FlgC [Citreicella sp. SE45]
          Length = 130

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---NVTVVTQR 56
          MS  +   + + +     + +   +  NI N D   Y R+      S      V +V   
Sbjct: 1  MSDFSNALSVSSSGLRAQASRLRIVSENIANVDTPGYHRKTIPFETSGNARDGVQMVETG 60

Query: 57 SEN 59
            +
Sbjct: 61 RVD 63


>gi|89895709|ref|YP_519196.1| hypothetical protein DSY2963 [Desulfitobacterium hafniense Y51]
 gi|89335157|dbj|BAE84752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 312

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 2/124 (1%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P+            +     L+   D         N     +P   +     L  Y    
Sbjct: 182 PTAFAVPEGAEDVQISTEGVLSATIDGSRQTLGQINIVTFANPEGLVRDGDNL--YFAPD 239

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +  +           +     +         VNL   ++ +I+V+++Y ++ ++I  
Sbjct: 240 TAGVTGDELVGTPGSQVEERTLGKLRTQSLEGSNVNLASAMTEMIQVQRAYQLNARMITN 299

Query: 468 TDKM 471
            D+M
Sbjct: 300 GDQM 303



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/325 (8%), Positives = 75/325 (23%), Gaps = 38/325 (11%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPEN--------------------VTVVTQRSENK 60
              +  N+ N +   Y  +      +                          V   + + 
Sbjct: 1   MDILGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQLVGERIDVGAGVIYPTIDT 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +    ++    +        + F  +            S    +       +    N   
Sbjct: 61  DYRQGIIRETENPFDLAIDGEGFFPV------RTANGESRYTRVGNFELDSQGKLVNSDG 114

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
            IL   V   A+ +    + +      I  +      + +++       +  ++      
Sbjct: 115 YILE--VKIPADAMDLYVDETGNITGFIDDEERVLGRVVVNDPEGEGYPVGPIDMDELG- 171

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG--TTLFETVPRDINFE 238
                         D+L    +   G   +  +   ++  T DG   TL +         
Sbjct: 172 -------RPLDWNGDILPTAFAVPEGAEDVQISTEGVLSATIDGSRQTLGQINIVTFANP 224

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
           +       +        GV      G+   + + + L ++R   +      L      +I
Sbjct: 225 EGLVRDGDNLYFAPDTAGVTGDELVGTPGSQVEERTLGKLRTQSLEGSNVNLASAMTEMI 284

Query: 299 GSFSEKDPIAGNSENVPGLFIADGI 323
                    A    N   ++     
Sbjct: 285 QVQRAYQLNARMITNGDQMWSMANS 309


>gi|219684534|ref|ZP_03539477.1| flagellar basal-body rod protein FlgC [Borrelia garinii PBr]
 gi|219685765|ref|ZP_03540576.1| flagellar basal-body rod protein FlgC [Borrelia garinii Far04]
 gi|219671896|gb|EED28950.1| flagellar basal-body rod protein FlgC [Borrelia garinii PBr]
 gi|219672704|gb|EED29732.1| flagellar basal-body rod protein FlgC [Borrelia garinii Far04]
          Length = 152

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|167945179|ref|ZP_02532253.1| hypothetical protein Epers_01140 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 126

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 2/125 (1%)

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      +V   +     +    ++         +A       L     N   + E
Sbjct: 2   QPAMTVPNDATSVTIGSDGIVSVLQAGNTDPTQIGQIELAYFANPQGLEPIGDNL--FRE 59

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S   +  +        + +    +  VN+ EEL  +I+ +++Y +++K I  TD+ML
Sbjct: 60  SAASGGVNTAIPGSDSTGTLMQGALESSNVNVVEELVNMIETQRAYEMNSKAISTTDEML 119

Query: 473 QTLLE 477
             +  
Sbjct: 120 SYINN 124


>gi|16126303|ref|NP_420867.1| flagellar basal body rod protein FlgG [Caulobacter crescentus CB15]
 gi|221235080|ref|YP_002517516.1| flagellar basal body rod protein FlgG [Caulobacter crescentus
           NA1000]
 gi|13637955|sp|Q06172|FLGG_CAUCR RecName: Full=Flagellar basal-body rod protein flgG; AltName:
           Full=Distal rod protein
 gi|13423543|gb|AAK24035.1| flagellar basal-body rod protein FlgG [Caulobacter crescentus CB15]
 gi|220964252|gb|ACL95608.1| flagellar basal-body rod protein flgG [Caulobacter crescentus
           NA1000]
          Length = 262

 Score = 62.0 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 30/166 (18%), Gaps = 35/166 (21%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A +           I  NI N +   + R+                          
Sbjct: 3   ALRTAASGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +           S +      + +  +            + 
Sbjct: 63  PTGVQVGGGVKAGSVYRITEQ---GTPTLTDSPLDLAIQGKGYMPIL------LPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                    + +       +  L +  I   +       + +  VQ
Sbjct: 114 YTRAGNFSTNDQGQIVT-EDGYLVQPGITIPQNATDITISKSGLVQ 158



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 2/168 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       ++   +   +    +  + +     Q  +   +L   G    +   ++ 
Sbjct: 91  SPLDLAIQGKGYMPILLPSGETAYTRAGNFSTNDQGQIVTEDGYLVQPGITIPQNATDIT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +        +      +A       L     N   +LE   S +  L    +
Sbjct: 151 ISKSGLVQVKLDGQPQPQTVGQIQLANFLNEGGLEAIGDNL--FLETAASGAATLAAPGE 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
             F  + + Y+    V+   E++ LI  +++Y +++K+I   D+MLQ 
Sbjct: 209 PGFGMLLQHYTEASNVDAVSEITALITAQRAYEMNSKVISTADQMLQA 256


>gi|225548842|ref|ZP_03769819.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           94a]
 gi|225370445|gb|EEG99881.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           94a]
          Length = 282

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNTVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/208 (6%), Positives = 36/208 (17%), Gaps = 34/208 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42
           ++     A +      ++  ++  N+ N D   Y +             R          
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 43  ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                  +P    + T               L    + +             +       
Sbjct: 61  PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            +              E      S   +         +      T   ++          
Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFESDP 173

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTAS 183
             L       + +   +    I      
Sbjct: 174 KRLVSEYENSWENYELLDTIRIVNFENP 201


>gi|240144760|ref|ZP_04743361.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis
           L1-82]
 gi|257203281|gb|EEV01566.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis
           L1-82]
 gi|291534610|emb|CBL07722.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1]
          Length = 272

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 79/272 (29%), Gaps = 5/272 (1%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                         D  +   +    + +++      +     I       +  +     
Sbjct: 6   YTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEEKPISA 65

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
           +  +   +    S+         E A     S      + G           D +  ++ 
Sbjct: 66  QVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFVWSVNA 125

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                +           +N       G  ++K + +     GY +    Y D      +F
Sbjct: 126 GGTLTLCTNEGYPVLDSNNQPINLPAGISAEKVIVSENGKMGYTNAAGTYVDMNQTIGLF 185

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                 N    L +   N +  +     ++ +    + +  + + + Y     V + +E+
Sbjct: 186 ----QFNNPSGLEKTGTNLLA-VTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADEM 240

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             LI  +++Y +++K I  +D+ML+      +
Sbjct: 241 VNLIIAQRAYQLNSKAITTSDEMLEQANNLKR 272



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 27/125 (21%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------------TISPEN 49
           ++     A            +I  N+ N +   Y +                  + + E 
Sbjct: 1   MMRALYTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEE 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLR 108
             +  Q      +          ++        F    +   A    +  +         
Sbjct: 61  KPISAQVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFV 120

Query: 109 DSLES 113
            S+ +
Sbjct: 121 WSVNA 125


>gi|224531802|ref|ZP_03672434.1| flagellar basal-body rod protein FlgC [Borrelia valaisiana VS116]
 gi|224511267|gb|EEF81673.1| flagellar basal-body rod protein FlgC [Borrelia valaisiana VS116]
          Length = 152

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|170742325|ref|YP_001770980.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46]
 gi|168196599|gb|ACA18546.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46]
          Length = 263

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 2/173 (1%)

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +            + D      +  S  +    Q  S   +L +           V  
Sbjct: 92  TYDVAIRGEGLFQITMPDGRTAYTRDGSFDLDAQGQIVSRDGYLLNPAITVPNNATAVTI 151

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
            A           +  +N     +A     V L     N   ++E   S           
Sbjct: 152 SASGLVQATLPGQTAPQNLGQIQLARFVNKVGLESIGDNL--FIETQASGPAIQGNPGTE 209

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            F  + +SY     VN   E+S LI  +++Y +++K++   D+ML T  +  +
Sbjct: 210 GFGSLQQSYLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQMLSTTSQMFR 262



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/153 (5%), Positives = 25/153 (16%), Gaps = 16/153 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD- 64
               A             I  NI N     Y R+                 + +      
Sbjct: 3   ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQAHFQDLLYQNLRRAGTATSDQGNQL 62

Query: 65  ---------------KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                            + +  +    ++        + +         +          
Sbjct: 63  PAGLALGSGVKTTSTARVMSQGTLSSTEKTYDVAIRGEGLFQITMPDGRTAYTRDGSFDL 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
             +    +    +L   +           + S 
Sbjct: 123 DAQGQIVSRDGYLLNPAITVPNNATAVTISASG 155


>gi|304321132|ref|YP_003854775.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis
           HTCC2503]
 gi|303300034|gb|ADM09633.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis
           HTCC2503]
          Length = 238

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 30/144 (20%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78
           +    I  NI NA    +     + +        +           +     S  + Q  
Sbjct: 17  KAVQMIANNIANASTPGFKSEGAIFSEYVSEGRSLATSLSMGRFVGQSTDYASGPLKQTG 76

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
               F    E                      LE    + + + L               
Sbjct: 77  GTYDFAIQGEGFFKVSTPAGERLTRAGSYTTDLEGVIVDPAGNPLLDEGGGEITIPPDAV 136

Query: 139 NTSAREVQKIRADADKEIELEISN 162
           +    +   +  D +   ++ +  
Sbjct: 137 SVGVGQDGTLSVDGEIFAKIGVYT 160


>gi|296447438|ref|ZP_06889363.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium
           OB3b]
 gi|296255058|gb|EFH02160.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium
           OB3b]
          Length = 262

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 39/216 (18%), Gaps = 16/216 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--VVTQRSENKNMF 63
               A    N   Q    I  NI N +   + R     T                     
Sbjct: 3   ALAIAATGMNAQQQNIEVISNNIANINTTAFKRSRAEFTDLLYQADRLQGVSNRGRDATV 62

Query: 64  --------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                          + L    S       L      +         +            
Sbjct: 63  PEGAQTGLGVRLTAIRSLQTQGSLAQTGNQLDLALNGRGWFQVTGPDSEILYTRSGSFST 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           +           ++  T+I     V  + + S      I    + +   +++        
Sbjct: 123 NANGQLVTGDGYLVSPTIIIPNNAVSVSVSQSGLVTAVIGGQTNPQQLGQLTIANFANES 182

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                    F+              D     IS+  
Sbjct: 183 GLEALGGNLFRQNQASGTPVVGVPGDPGYGVISQYY 218



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 8/224 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                   +++ +             Q     R+      +       + N   L +   
Sbjct: 41  TDLLYQADRLQGVSNRGRDATVPEGAQTGLGVRLTAIRSLQTQGSLAQTGNQLDLALNGR 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                      I  T   +    +N   +   G +    +    N        +    + 
Sbjct: 101 GWFQVTGPDSEILYTRSGSFSTNANGQLVTGDGYLVSPTIIIPNNAVSVSVSQSGLVTAV 160

Query: 383 N------KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                  +      +A       L     N   + +   S +  + +     +  IS+ Y
Sbjct: 161 IGGQTNPQQLGQLTIANFANESGLEALGGNL--FRQNQASGTPVVGVPGDPGYGVISQYY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  V+  +EL  LI  ++++ +++K+I   D+M  T+ +G++
Sbjct: 219 LESSNVDSVKELVNLIAAQRAFELNSKVISAVDEMAGTVSKGIR 262


>gi|225552253|ref|ZP_03773193.1| flagellar basal-body rod protein FlgC [Borrelia sp. SV1]
 gi|225371251|gb|EEH00681.1| flagellar basal-body rod protein FlgC [Borrelia sp. SV1]
          Length = 152

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLAAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|51598553|ref|YP_072741.1| flagellar basal body rod protein FlgC [Borrelia garinii PBi]
 gi|51573124|gb|AAU07149.1| flagellar basal-body rod protein [Borrelia garinii PBi]
          Length = 152

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ ++  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVVNSSKSMFRSALAILQ 151


>gi|298507080|gb|ADI85803.1| flagellar basal body rod protein FlgF [Geobacter sulfurreducens
           KN400]
          Length = 242

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/133 (6%), Positives = 26/133 (19%), Gaps = 12/133 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTVVT 54
           + +    A +    A ++   +  N+ N +   + +         +          T   
Sbjct: 1   MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             SE     D        ++ Q           +     +             +      
Sbjct: 61  VYSETAFFTDHSR----GSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGK 116

Query: 115 SKNLSEDILGKTV 127
                   +    
Sbjct: 117 LVTADGYEVSGGG 129



 Score = 40.4 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + + +     V+  +E+  LI+ ++ + + +K I   D M
Sbjct: 192 VRQGHLEYSNVSAIQEMVQLIETQRFFEMCSKAIKAYDDM 231


>gi|15594638|ref|NP_212427.1| flagellar basal body rod protein FlgC [Borrelia burgdorferi B31]
 gi|195941353|ref|ZP_03086735.1| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a]
 gi|216264936|ref|ZP_03436928.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a]
 gi|218249308|ref|YP_002374816.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7]
 gi|221217671|ref|ZP_03589139.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a]
 gi|223888936|ref|ZP_03623527.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b]
 gi|224533191|ref|ZP_03673791.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          WI91-23]
 gi|224533682|ref|ZP_03674270.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          CA-11.2a]
 gi|225549042|ref|ZP_03770017.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a]
 gi|225550067|ref|ZP_03771027.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a]
 gi|226320594|ref|ZP_03796154.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          29805]
 gi|2494521|sp|Q57466|FLGC_BORBU RecName: Full=Flagellar basal-body rod protein flgC
 gi|1165277|gb|AAA85616.1| FlgC [Borrelia burgdorferi]
 gi|1196316|gb|AAB51408.1| flagellar basal body rod protein [Borrelia burgdorferi]
 gi|2688173|gb|AAC66655.1| flagellar basal-body rod protein (flgC) [Borrelia burgdorferi
          B31]
 gi|215981409|gb|EEC22216.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a]
 gi|218164496|gb|ACK74557.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7]
 gi|221192348|gb|EEE18567.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a]
 gi|223885752|gb|EEF56851.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b]
 gi|224511918|gb|EEF82319.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          WI91-23]
 gi|224512975|gb|EEF83338.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          CA-11.2a]
 gi|225369179|gb|EEG98632.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a]
 gi|225370268|gb|EEG99706.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a]
 gi|226234013|gb|EEH32734.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          29805]
 gi|312147876|gb|ADQ30535.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi JD1]
 gi|312149272|gb|ADQ29343.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi N40]
          Length = 152

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|327441420|dbj|BAK17785.1| flagellar basal body rod protein [Solibacillus silvestris StLB046]
          Length = 279

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 77/275 (28%), Gaps = 7/275 (2%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           T   +     + T                +   +  +  + N   +D  V  +  G    
Sbjct: 9   TNTLSQLQHQLDTISTNIANSNTTGFKAQQANFTEMLYQQFNNDELDRTVRDTPVGIRYG 68

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            G    L+Q  +      Q    ++   L       + +  N E                
Sbjct: 69  VGAQIGLIQS-NQSQGSLQVTNRDLDFALTTENQYFNVLMQNPEGDVRTAYTRNGSFYVT 127

Query: 329 KLCQGISETICVNPQYRSNPSF---LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
           +   GI   +  +    ++ +                 +   +A Y +            
Sbjct: 128 QNEPGILSLVNSDGYQVADANGQPITFPDNVTGFTMDSDGSLVASYENGTPLKFQLGISE 187

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                V       T +    N             DL   ++ V   + +       V++ 
Sbjct: 188 LQKPNVMEKLQGGTYIGLPENLDALGFTQAQVLTDLQGANRQVG--VQKGALEMSNVDVS 245

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +E++ LI+ ++SY  + + I   D+ML  L+ G++
Sbjct: 246 KEMTNLIQAQRSYQFNTRAITIADQMLG-LINGIR 279



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 45/185 (24%), Gaps = 8/185 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A N  +    Q  +I  NI N++   +  +    T           +  N + 
Sbjct: 1   MLRTMVSATNTLSQLQHQLDTISTNIANSNTTGFKAQQANFTEMLY-------QQFNNDE 53

Query: 63  FDKVLHAHSSAIGQQRLLQ-SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
            D+ +      I      Q       +   +    N      ++          +N   D
Sbjct: 54  LDRTVRDTPVGIRYGVGAQIGLIQSNQSQGSLQVTNRDLDFALTTENQYFNVLMQNPEGD 113

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +      + +  V QN       V              I+            + ++    
Sbjct: 114 VRTAYTRNGSFYVTQNEPGILSLVNSDGYQVADANGQPITFPDNVTGFTMDSDGSLVASY 173

Query: 182 ASKHD 186
            +   
Sbjct: 174 ENGTP 178


>gi|326386930|ref|ZP_08208544.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208610|gb|EGD59413.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 270

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 49/191 (25%), Gaps = 2/191 (1%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            L         + S        + N        G     +     +  T        + P
Sbjct: 81  DLMISGDGFFTTSSAVTGQVYYTRNGSFSMDGQGYLTDGSGNRLQVFPTDSSGNVTSTTP 140

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
              +   + +    ++   +A    +   Y D  N       +A       L +   ++ 
Sbjct: 141 GSAQVPLTNAAGSQFSGATVAADGSISVSYADGSNSVIGKVALASFVAPQGLKQVGSSNY 200

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                  S +      S   +  +         V+L  E+  LI  +Q +  + K I   
Sbjct: 201 TSTGI--SGTATYGQPSTGQYGSLMSGSLEASNVDLSSEMVNLITAQQYFQANAKAIDAN 258

Query: 469 DKMLQTLLEGV 479
             +   ++   
Sbjct: 259 TTINDAIINLK 269



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 71/268 (26%), Gaps = 15/268 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------VVTQ 55
            +  + +   NA    + I  NI NAD   + +     +                   T 
Sbjct: 2   SYYTSLSGLQNAQTDLSVIGNNIANADTNGFKKSSVDFSNLVAASAFTNPKNIVGIGSTV 61

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           +S N++     +    SA+        F      +                     + Y 
Sbjct: 62  QSINQDFAQGGVKQTGSALDLMISGDGFFTTSSAV-----TGQVYYTRNGSFSMDGQGYL 116

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            + S + L     D++  V      SA+      A +        ++    +S     N 
Sbjct: 117 TDGSGNRLQVFPTDSSGNVTSTTPGSAQVPLTNAAGSQFSGATVAADGSISVSYADGSNS 176

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I     +   A   L Q        + I G +T  + +         G+     V    
Sbjct: 177 VIGKVALASFVAPQGLKQVGSSNYTSTGISGTATYGQPSTGQYGSLMSGSLEASNVDLSS 236

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
               + +     ++N   ID     ++ 
Sbjct: 237 EMVNLITAQQYFQANAKAIDANTTINDA 264


>gi|94969950|ref|YP_591998.1| flagellar basal-body rod FlgG [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552000|gb|ABF41924.1| Flagellar basal-body rod FlgG [Candidatus Koribacter versatilis
           Ellin345]
          Length = 263

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 3/184 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                E      +       F    + D      +     +       ++          
Sbjct: 82  TQGEFESTGNPLDIAIQGQGFFQVLLPDGTTGYTRSGQFHLDAQGNVVTSDGNQLQPSLT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  +   A     +     +  +      VA       L    +N   +L    S 
Sbjct: 142 IPADAQTISIGADGTVTVTQPGQTQAQQVGSIQVASFANPGGLNSIGKNL--FLATTASG 199

Query: 418 SHDLHMKSQV-VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
              +           + +       V++ +E   +I  ++SY  ++K++   ++MLQ L 
Sbjct: 200 DPTIGTPGGAEGAGTLQQGVLEQANVSVVDEFIQMILAQRSYEANSKVVTAANEMLQNLN 259

Query: 477 EGVK 480
              +
Sbjct: 260 TMAR 263



 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/174 (7%), Positives = 30/174 (17%), Gaps = 15/174 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A            +I  N+ NA    +  R            VV   +  +  
Sbjct: 1   MFRALYTAATGMTAQQLNLDNIANNLSNASTAGFRARRLQFQDLMYQNMVVPGSAATQQT 60

Query: 63  F---------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                            + L            L      +           +      + 
Sbjct: 61  TVASGLQVGLGTRPTASETLQTQGEFESTGNPLDIAIQGQGFFQVLLPDGTTGYTRSGQF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +        + L  ++   A+    +                 +    I 
Sbjct: 121 HLDAQGNVVTSDGNQLQPSLTIPADAQTISIGADGTVTVTQPGQTQAQQVGSIQ 174


>gi|39998143|ref|NP_954094.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens
           PCA]
 gi|39985089|gb|AAR36444.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens
           PCA]
          Length = 242

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/133 (6%), Positives = 26/133 (19%), Gaps = 12/133 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--------NVTVVT 54
           + +    A +    A ++   +  N+ N +   + +         +          T   
Sbjct: 1   MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             SE     D        ++ Q           +     +             +      
Sbjct: 61  VYSETAFFTDHSR----GSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGK 116

Query: 115 SKNLSEDILGKTV 127
                   +    
Sbjct: 117 LVTADGYEVSGGG 129



 Score = 40.0 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + + Y     V+  +E+  LI+ ++ + + +K +   D M
Sbjct: 192 VRQGYLELSNVSAIQEMVQLIETQRFFEMCSKAVKAYDDM 231


>gi|150388210|ref|YP_001318259.1| hypothetical protein Amet_0370 [Alkaliphilus metalliredigens QYMF]
 gi|149948072|gb|ABR46600.1| protein of unknown function DUF1078 domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 264

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
                 L    RN   + E   S         +   + I + +  T  V + +E+  +I 
Sbjct: 181 FLNPQGLESVGRNL--YKETVASGEEIPME-GEGRTSSILQGFLETSNVQIVDEMVKMIT 237

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +++Y  S+K I   D+ML       +
Sbjct: 238 AQRAYETSSKTIQTADEMLGMANNLRR 264



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 22/108 (20%), Gaps = 12/108 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVV 53
               A +          ++  N+ N +   Y  + T                + +   V 
Sbjct: 3   ALWTAASGMKAQQLNIDTVANNMANVNTTAYKAQRTEFKDLLYANMKRTNLNNGQGSPVN 62

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            Q               +  + Q           E   A +  N    
Sbjct: 63  LQVGHGVMPVATSRMFTTGNLEQTANPLDVAIDGEGFLAIEGPNGEIY 110


>gi|296331269|ref|ZP_06873741.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676256|ref|YP_003867928.1| putative flagellar hook-basal body protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151384|gb|EFG92261.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414500|gb|ADM39619.1| putative flagellar hook-basal body protein [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 269

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 4/145 (2%)

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
                      N + + D    +     ++KN+    +      D          V  +N
Sbjct: 129 ANANQLQLVTGNGNPVLDENGNTVNIDSSMKNITINKNGTLTASDGSAVQRFNLGVVQVN 188

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N       + + + +    +      I +       V++ E+++ LI  +
Sbjct: 189 NPQELKSEGNNLFS---IDNAAAFEQLNGANRQNIGIEQGSLEMSNVDISEQMTDLITSQ 245

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           +SY ++++ I   D+ML  L+  V+
Sbjct: 246 RSYQLNSRTITMGDQMLG-LINSVR 269



 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A    N   QQ  +I  N+ N++   Y  +DT  +  
Sbjct: 1  MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44


>gi|111115607|ref|YP_710225.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo]
 gi|216263707|ref|ZP_03435702.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1]
 gi|110890881|gb|ABH02049.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo]
 gi|215980551|gb|EEC21372.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1]
          Length = 282

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDV--SLRPKIETEALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/211 (5%), Positives = 34/211 (16%), Gaps = 40/211 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +      ++   +  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L    + +             +    
Sbjct: 61  PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTGNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
               +              E      S   +         +      T   ++       
Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFE 170

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                L   +   + +   +    I      
Sbjct: 171 SNPRRLVSEHENSWENYELLDTIRIVNFENP 201


>gi|262653|gb|AAB24739.1| flagellar basal body distal rod protein [Caulobacter vibrioides]
          Length = 262

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 30/166 (18%), Gaps = 35/166 (21%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A +           I  NI N +   + R+                          
Sbjct: 3   ALRTAASGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +           S +      + +  +            + 
Sbjct: 63  PTGVQVGGGVKAGSVYRITEQ---GTPTLTDSPLDLAIQGKGYMPIL------LPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                    + +       +  L +  I   +       + +  VQ
Sbjct: 114 YTRAGNFSTNDQGQIVT-EDGYLVQPGITIPQNATDITISKSGLVQ 158



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 2/168 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +       ++   +   +    +  + +     Q  +   +L   G    +   ++ 
Sbjct: 91  SPLDLAIQGKGYMPILLPSGETAYTRAGNFSTNDQGQIVTEDGYLVQPGITIPQNATDIT 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +        +      +A       L     N   +LE   S +  L  ++ 
Sbjct: 151 ISKSGLVQVKLDGQPQPQTVGQIQLANFLNEGGLEAIGDNL--FLETAASGAATLVRRAS 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
                   + +    V+   E++ LI  +++Y +++K+I   D+MLQ 
Sbjct: 209 RALACCCSTDTEASNVDAVSEITALITAQRAYEMNSKVISTADQMLQA 256


>gi|167038783|ref|YP_001661768.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514]
 gi|256751340|ref|ZP_05492219.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300913632|ref|ZP_07130949.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561]
 gi|307723353|ref|YP_003903104.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513]
 gi|166853023|gb|ABY91432.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514]
 gi|256749722|gb|EEU62747.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300890317|gb|EFK85462.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561]
 gi|307580414|gb|ADN53813.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513]
          Length = 251

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 66/252 (26%), Gaps = 28/252 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           +L     A +     ++    +  N+ N +   Y R   +T+  P               
Sbjct: 1   MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNIPPN 60

Query: 49  --------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V V T    + N  +      +  +        F  +          + S 
Sbjct: 61  GKIGRMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVDTPNGQRYTRDGSF 117

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           T        + E Y        +  +  D + + + N   + + V ++R       +   
Sbjct: 118 TLSKDGHLVTKEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                        N  +   T             + + + ++    IS +    ++  V 
Sbjct: 178 KEGNNLFFIDNSTNVQVIPVTGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234

Query: 221 TSDGTTLFETVP 232
            +   TL + V 
Sbjct: 235 IAFDETLGKAVN 246



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           V   I + +     VN  +E+  +I V ++Y  + K+++  D+ L   + 
Sbjct: 197 VTGKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246


>gi|218460753|ref|ZP_03500844.1| flagellar basal body rod protein FlgG [Rhizobium etli Kim 5]
          Length = 244

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                  +A       L     N   + E   S    +    +  F ++ + Y  +  V+
Sbjct: 150 TVLGQLTLADFVNEAGLQPIGDNL--FQETAASGEAVVGNPDEEGFGYMKQGYLESSNVD 207

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +E++ LI  +++Y +++K+I   D+M
Sbjct: 208 PVKEITELISAQRAYEMNSKVITTADEM 235



 Score = 43.9 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 21/125 (16%), Gaps = 34/125 (27%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTIS-------------------------PENVTVVTQR 56
             I  NI N +     R     T                              V     R
Sbjct: 1   EVIANNIANINTTGSKRARAEFTDLLYQTERAKGVANRANQAVVPEGANIGLGVQTSAVR 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                     L    + +    + + F  ++           +          + +    
Sbjct: 61  ---NLHLQGELTQTGNDLDVALIGKGFFQIQ------STDGTTLYTRAGAFNKNDQGQLV 111

Query: 117 NLSED 121
            +   
Sbjct: 112 TIDGY 116


>gi|86750896|ref|YP_487392.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           HaA2]
 gi|86573924|gb|ABD08481.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris HaA2]
          Length = 262

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 46/181 (25%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +         + +          I+  D         +   +   R   +          
Sbjct: 82  TQGTLSTTGNDLDLAIRGEGFFKIQMPDGTFSYTRDGSFTTDNTGRIVTANGNPLQPTIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                          ++          +   +             +    ++E   S   
Sbjct: 142 IPNGATSITVATNGQVSVTVSGATAPTVLGQIGLTRFINKTGLQPQGDNLFIETQASGPP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              + +      + +       V +  E+S LI  +++Y ++ K++   D+MLQ+     
Sbjct: 202 QDGIATADGLGDMMQKTLEQANVEVVTEISDLISAQRAYEMNAKVVSAADQMLQSTSNMY 261

Query: 480 K 480
           +
Sbjct: 262 R 262



 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 42/235 (17%), Gaps = 38/235 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI N     + ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGVDIGGGVKTVGTPRL---MTQGTLSTTGNDLDLAIRGEGFFKIQ------MPDGTFS 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEE---VVQNFNTSAREVQKIRADADKEIE 157
                             + + L  T+          V      +  V    A       
Sbjct: 114 YTRDGSFTTDNTGRIVTANGNPLQPTITIPNGATSITVATNGQVSVTVSGATAPTVLGQI 173

Query: 158 LEISNLRRFLSELTVVNDAI-KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                + +   +    N  I    +    D     D    ++QK  E   +  + 
Sbjct: 174 GLTRFINKTGLQPQGDNLFIETQASGPPQDGIATADGLGDMMQKTLEQANVEVVT 228


>gi|34558066|ref|NP_907881.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740]
 gi|34483784|emb|CAE10781.1| FLAGELLAR HOOK PROTEIN FLGE [Wolinella succinogenes]
          Length = 745

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/434 (11%), Positives = 111/434 (25%), Gaps = 19/434 (4%)

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           D +   + S  G+           E  S       +     +           N+     
Sbjct: 314 DTLYDMNISVSGKLGQKLGLNGNSENFS--SGAVGAYNASATNYEVGAYVMLDNVVYRRT 371

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                 +      N+        +    A       +      L             T  
Sbjct: 372 TSVGNSDPHTDTTNWERIDSSAIEGYNTALAYEVGNVVEQGGLLYRRIGTAGNSDPATNP 431

Query: 184 KHDAHDFLDQRDVLLQ--KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                        L    + +       +  N        + G +   T   +      +
Sbjct: 432 ADWEDLGASATGSLPNYAEGTTYNTNDIVSHNGILYKRTGASGASDPYTDSANWTKVGND 491

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ----LDEMARVL 297
           S + T  + P +  GV V S+ G+         LL   +  V           D   + +
Sbjct: 492 SRSTTKFAVPSYTSGVEVYSSDGTKYVLQSTYYLLDSGNDGVGERWEVRSAIYDSTGKSM 551

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS-NPSFLRDGGS 356
           + +      +  ++       +A              +E   ++  Y     S       
Sbjct: 552 VSTAPVVHEMTFDNGVASAASVAIPFDGGTITYNPAQTEDGKLSTNYTYVESSVKAKSQD 611

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS--------I 408
            S     +   +     +I  + +  ++      +A    +  L +   N          
Sbjct: 612 GSPAGRLDDVGVDSNGRIILTFTNGKSEVMGRVGLAAFVNDQGLQKVGGNMFQMTSISVN 671

Query: 409 GWLEKNRSDSHDLH--MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           G      S +  L      Q+ F  + +S   T  V++   L+ LI +++ Y+ + K   
Sbjct: 672 GGQPVYSSGAPILAWDETGQLKFGKVLDSMLETSNVDIGAALTELIVLQRGYSFNAKAFT 731

Query: 467 FTDKMLQTLLEGVK 480
             D++++  +   K
Sbjct: 732 TGDELIKEAIGLKK 745



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/477 (8%), Positives = 97/477 (20%), Gaps = 41/477 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV------------ 50
           + A      +          S+  NI N +   Y                          
Sbjct: 1   MNATLFNGLSGILTHQVGLDSVSNNIANVNTTGYRANIPQFETLFAKSMSYINSSSPINN 60

Query: 51  ---TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--------DDHYNNS 99
                VT  S   +  +    +           + +  +    S               +
Sbjct: 61  DFEHGVTVSSNAISNKNGSYKSSDGEFDIAYAGKGWFVVGTQKSGSFDLQNPTVAATQKN 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK----- 154
                       E Y  N S   L    +    E      +       +           
Sbjct: 121 YFTRDGSFSRDSEGYLVNASGYYLYGIDLGKISETGTFNASRNEAADNLALSGSNLSPLK 180

Query: 155 ---------EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
                     +  ++          T       F  A      +    +D+      ++ 
Sbjct: 181 IPEDLYYQPTVTTQVGAAVNLNKSATGTGVNEVFLNADGSFDLEAFLAQDMNALMDGDLK 240

Query: 206 GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS 265
            I  +   +  +      G T  E+          N +    E   +      ++ +   
Sbjct: 241 LIDALNYKDLTITTTLPSGKT--ESHTFTYGGSGSNGFKTVGELKGLIEAQTGLTLDITR 298

Query: 266 AVPKGKIKALLQIRDSVVPIF-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                     + +R+  +     +   ++ + L  + + ++  +G             + 
Sbjct: 299 DSSGNPAGCTMSLRNDTLYDMNISVSGKLGQKLGLNGNSENFSSGAVGAYNASATNYEVG 358

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                       T  V        +   +    S    +N        +++      + +
Sbjct: 359 AYVMLDNVVYRRTTSVGNSDPHTDTTNWERIDSSAIEGYNTALAYEVGNVVEQGGLLYRR 418

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                            +   ++ G L          +    V  N I    +   G
Sbjct: 419 IGTAGNSDPATNPADWEDLGASATGSLPNYAEG-TTYNTNDIVSHNGILYKRTGASG 474


>gi|83589650|ref|YP_429659.1| hypothetical protein Moth_0798 [Moorella thermoacetica ATCC 39073]
 gi|83572564|gb|ABC19116.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 280

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 54/277 (19%), Gaps = 38/277 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++    +  +       Q  S+  +I N +   Y +     +                  
Sbjct: 2   MIGALWRGASGMRAQQVQVDSLANDIANVNTTGYKQVRVGFSDLVYRPVMEAGMPVEQPQ 61

Query: 45  ------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V V +     K+     L      +      + F A+            
Sbjct: 62  APGSTVSLGTGVKVASI---VKDFSQGALVQTGEPLNLAIQGEGFFAVVN------GAGE 112

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                        +    N     L       A            E + I   AD  I  
Sbjct: 113 RFLTRDGNFHRDADGNVVNDGGYYLAI----PAGNNQDVPLNLPPEAENINVAADGTITA 168

Query: 159 EIS-NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
            ++  ++                 A   + +        L        G S        +
Sbjct: 169 TVNGQVQPLGQIYLYTVSNPAGLEAVGDNLYRLTPACGQLFYGAPGTAGNSETTGTPGPV 228

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
           +     G      V       +M       E N   I
Sbjct: 229 LGTLRSGYLEAANVDLAATMTRMVVAQRAYELNSRTI 265



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/180 (7%), Positives = 43/180 (23%), Gaps = 3/180 (1%)

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
              L         +   +         +  +D D  +       + +      +      
Sbjct: 93  PLNLAIQGEGFFAVVNGAGERFLTRDGNFHRDADGNVVNDGGYYLAIPAGNNQDVPLNLP 152

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV--TLLEYARNSIGWL 411
             + +     +    A     +      +              +    L           
Sbjct: 153 PEAENINVAADGTITATVNGQVQPLGQIYLYTVSNPAGLEAVGDNLYRLTPACGQLFYGA 212

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +S         V   +   Y     V+L   ++ ++  +++Y ++++ I   D+M
Sbjct: 213 PGTAGNSETTGTPGP-VLGTLRSGYLEAANVDLAATMTRMVVAQRAYELNSRTIRVADEM 271


>gi|85706171|ref|ZP_01037266.1| flagellar basal-body rod protein FlgC [Roseovarius sp. 217]
 gi|85669335|gb|EAQ24201.1| flagellar basal-body rod protein FlgC [Roseovarius sp. 217]
          Length = 130

 Score = 61.6 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS  +   + + +     +Q+   +  NI NAD   Y R+      +            +
Sbjct: 1  MSDFSNALSVSASGLKAQAQRLVHVSENIANADTPGYRRKTVSFETAFAGSEGTGAVEVS 60

Query: 60 KNMFDKV 66
          +   D+ 
Sbjct: 61 RVNLDRR 67


>gi|260429403|ref|ZP_05783380.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45]
 gi|260420026|gb|EEX13279.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45]
          Length = 261

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 58/221 (26%), Gaps = 8/221 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                 +      +   D  +     Q+   AR    +   +     ++     + I   
Sbjct: 41  ADLHYQQIARAGTINASDGTMLPTGVQMGLGARPAAVTMKLEQGALSDTGGDLDIAIEGR 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                         T     +  ++   +   G      +    +             ++
Sbjct: 101 GYFEVTLPSGIAGYTRDGALKRNADGMIVTSDGLPVSPEIVIPDDAISLSINAEGEVYAY 160

Query: 383 NKNFIFDPV------AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
             + +   +       G      L     N     E   S         Q       + Y
Sbjct: 161 FADAVQAQLLGQFTIVGFTNPKGLEAIGGNLFT--ETEASGPPIQTTAGQEGLGTFRQGY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                V+   E++ LI+ ++ Y +++K+I   D+ML   ++
Sbjct: 219 LEDSSVDPVYEITELIEAQRGYELNSKVISAADQMLGATVQ 259



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/151 (6%), Positives = 28/151 (18%), Gaps = 28/151 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQIARAGTINASDGTML 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +            +    L      +      + +  +            +    
Sbjct: 63  PTGVQMGLGARPAAVTMKLEQGALSDTGGDLDIAIEGRGYFEV------TLPSGIAGYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
              L+ + +          +   ++   + +
Sbjct: 117 DGALKRNADGMIVTSDGLPVSPEIVIPDDAI 147


>gi|258511381|ref|YP_003184815.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478107|gb|ACV58426.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 335

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 64/254 (25%), Gaps = 2/254 (0%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L   V              T     + I G                     +  +   + 
Sbjct: 81  LGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTNGTSTYLTRAGNFSVDSAGNLVL 140

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
            N +  +        S     + +S N      +       +     ++          +
Sbjct: 141 PNGVIALGYEATSLSSSTTSGSTSSSNNSVPPPSTASTTTSSLSSVNLNTWANDWANKYA 200

Query: 347 NPSFLRDGGSVSKKFLWN-VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +   +    +VS          L   P   +    +      +  +A +     L+    
Sbjct: 201 SGEKVSQVSNVSIGANGALTATLTLTPSSGSGSPSTQTVVLGYLALAQVPNPQGLVSVGD 260

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N         + +       Q  +  ++        V+L ++ + +I  + +Y  +  +I
Sbjct: 261 NLFS-ASSPAAGTPTYWTPGQGTYGTLASGELEGSNVDLSQQFAEMIVAQNAYVANTHMI 319

Query: 466 MFTDKMLQTLLEGV 479
              + +LQ L+   
Sbjct: 320 GTDNAILQALVNMK 333



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/295 (6%), Positives = 56/295 (18%), Gaps = 25/295 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +L   N A +           +  NI N +   + + D                      
Sbjct: 1   MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTAPNP 60

Query: 44  ------TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +    T   Q      +    +           +  +            +  
Sbjct: 61  GTGSSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTNGT 120

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           ++                   +  I       +      + +TS+               
Sbjct: 121 STYLTRAGNFSVDSAGNLVLPNGVIALGYEATSLSSSTTSGSTSSSNNSVPPPSTASTTT 180

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +S++          N     +  S+           +           S        +
Sbjct: 181 SSLSSVNLNTWANDWANKYASGEKVSQVSNVSIGANGALTATLTLTPSSGSGSPSTQTVV 240

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
           + Y +            +     ++ +  + +   +  G        S   +G  
Sbjct: 241 LGYLALAQVPNPQGLVSVGDNLFSASSPAAGTPTYWTPGQGTYGTLASGELEGSN 295


>gi|312879592|ref|ZP_07739392.1| flagellar basal body rod protein [Aminomonas paucivorans DSM
          12260]
 gi|310782883|gb|EFQ23281.1| flagellar basal body rod protein [Aminomonas paucivorans DSM
          12260]
          Length = 136

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 12/44 (27%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L       +           I  NI N +   + + + +    
Sbjct: 1  MLRSLYSGVSGVKGHQTYLDVIGNNIANVNTTGFKKSNVLFQDL 44


>gi|330983289|gb|EGH81392.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 183

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 30/167 (17%), Gaps = 7/167 (4%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------SPENVTVVTQRSENKN 61
           N   +    A++       NI N     +                  +            
Sbjct: 1   NIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVRTA 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +     S   G    L       +      +                E Y  N S  
Sbjct: 61  AVSQQFSQGSLTTGTANSL-DLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSSNM 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            L    +D    VV    +  R                 +NL     
Sbjct: 120 KLQGYNVDANGSVVTGALSDLRVNASNLDPKATSTITNSANLNSTTP 166


>gi|330893050|gb|EGH25711.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 165

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/133 (7%), Positives = 31/133 (23%), Gaps = 4/133 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF-- 63
            FN A +  + A+++      NI N+    +       +       + + R+   +    
Sbjct: 2   SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVCL 61

Query: 64  --DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              +       ++                       +              ++  +    
Sbjct: 62  ASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSEGG 121

Query: 122 ILGKTVIDNAEEV 134
            L     +   E+
Sbjct: 122 RLQGYAANEQGEI 134


>gi|254421122|ref|ZP_05034846.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3]
 gi|196187299|gb|EDX82275.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3]
          Length = 262

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 2/164 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       +    +   +    +  +  +    Q  ++  +         +   +V   
Sbjct: 93  YDMAIDGKGYFQITLPSGEIGYTRAGNLQVNQEGQIVTDDGYALQPAVTIPQDATDVTIS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                 +     +         +A       L     N +  LE   S + ++       
Sbjct: 153 KSGLVQVTQAGQTAPTTVGQIELATFFNEAGLEAIGDNLL--LETAASGAANIGTPGSPG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           F  I + Y+    V+   E+S LI  +++Y +++K+I   D ML
Sbjct: 211 FGKILQGYTEASNVDSVAEISALIIAQRAYEMNSKVISTADNML 254



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 5/41 (12%), Positives = 10/41 (24%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A +           I  NI N +   + ++       
Sbjct: 3  ALRTAASGMAAQQLNVEVISNNIANMNTVGFKKQRAEFQDL 43


>gi|20806698|ref|NP_621869.1| flagellar basal body and hook proteins [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515152|gb|AAM23473.1| Flagellar basal body and hook proteins [Thermoanaerobacter
           tengcongensis MB4]
          Length = 251

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVT----- 51
           ++     A +     ++    +  N+ NA+   Y +   + +  P               
Sbjct: 1   MIRGLYTAASGMLAQTKVMDVLANNLANANTVGYKKDIVVLSSFPNLETIREGGDNVPPD 60

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   + +    +  L   +  +        F  +          + + T  
Sbjct: 61  RKVGRIEYGVLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMN 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + + Y        +  +  D + +   N   + + V ++R       +      
Sbjct: 121 ADGYLVTKDGYIVLGENGPIRLSQGDVSVDENGNIINNGQLVDRLRIVDFDNYDALRKQG 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                    VN  I   T             + + + ++    IS +    ++  V T+ 
Sbjct: 181 DNLFYLDNAVNTQIIPATGRIKQGFLEGSNVNSVKEMVN---MISVMRNYESNQKVVTAF 237

Query: 224 GTTLFETVP 232
             TL + V 
Sbjct: 238 DETLGKAVN 246



 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + +     VN  +E+  +I V ++Y  + K++   D+ L   + 
Sbjct: 199 GRIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTAFDETLGKAVN 246


>gi|226321611|ref|ZP_03797137.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          Bol26]
 gi|226232800|gb|EEH31553.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi
          Bol26]
          Length = 152

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|311070150|ref|YP_003975073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942]
 gi|310870667|gb|ADP34142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942]
          Length = 274

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 7/209 (3%)

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
           + A +  R         + +    +   S  +   +  N         A  +        
Sbjct: 73  VGAAMNARLVSDQGSIEKTERDLDIAFTSPYQYLQVNVNGNRQYTRDGALYLTPAAGNDN 132

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
           Q    T    P    N + +    S+ +  +     L             FN   +    
Sbjct: 133 QLQLVTGDGYPVLDENGNPINIDDSMKQITISENGTLTASTGNAGDASQQFNLGVVQ--- 189

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
             +N    L     N         +   +L+  ++     I +       V++ ++++ L
Sbjct: 190 --VNNPQELKSEGNNLFSLNGNAAAALEELNGANRQSIG-IQQGALEMSNVDISKQMTDL 246

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           I  ++SY ++++ I   D+ML  L+  V+
Sbjct: 247 ISSQRSYQLNSRTITMGDQMLG-LVNSVR 274


>gi|295688784|ref|YP_003592477.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC
           21756]
 gi|295430687|gb|ADG09859.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC
           21756]
          Length = 262

 Score = 61.2 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/184 (4%), Positives = 33/184 (17%), Gaps = 34/184 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A +  +        I  NI N +   + R+                          
Sbjct: 3   ALRTAASGMSAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +     +           + +      + +  +            + 
Sbjct: 63  PTGVQVGGGVKAGSVYRITEQ---GTPTLTDNPLDLAIQGKGYLQIL------LPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + +          +   +      +    + +     K+  D   +   ++
Sbjct: 114 YTRAGNFSTNDQGQIVTEDGYTVQPGITVPQNAIDIIISKTGMVQVKLDGDPQPQTIGQL 173

Query: 161 SNLR 164
               
Sbjct: 174 QLAN 177



 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 2/151 (1%)

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +  + +     Q  +   +    G    +   ++         +    D   +   
Sbjct: 112 TAYTRAGNFSTNDQGQIVTEDGYTVQPGITVPQNAIDIIISKTGMVQVKLDGDPQPQTIG 171

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A       L     N   +LE   S + +L    Q  F  + + Y+    V+   E
Sbjct: 172 QLQLANFMNEGGLEAIGDNL--FLETAASGAANLAAPGQPGFGVLMQHYTEASNVDSVSE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++ LI  +++Y +++K+I   D+MLQT  + 
Sbjct: 230 ITALITAQRAYEMNSKVISTADQMLQTTSQM 260


>gi|328948268|ref|YP_004365605.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM
           2489]
 gi|328448592|gb|AEB14308.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM
           2489]
          Length = 266

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 42/234 (17%), Gaps = 23/234 (9%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTM-------TTIS 46
               +  N    +  +I  N+ N D   +               RR             +
Sbjct: 6   YIGASGMNAQQNRLDTISNNLANVDTTGFKKEIPVNKEFSELLLRRTVADGVYKTPFGSA 65

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                + +         +        +              E                  
Sbjct: 66  DAVSIIGSI-GLGVETNELYTDFSQGSFKSTDTKTDMALGGEGFFTVQTPAGERYTRNGN 124

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                E          +            + F      +     +   +    +      
Sbjct: 125 FHLGKEGILLTKEGYPVLGENGAIHVPNDKFFVNQDGMIYTNEDNELVDRIKVVRFENER 184

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             +    +        S        D+R  LLQ  +E   ++ +      + V 
Sbjct: 185 FLKKQGSSLW-NSNEISGDAYIAEGDERPRLLQGYTEASNVNVVNEMVQMIEVN 237



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + + Y+    VN+  E+  +I+V ++Y  + K +   D M+ TL
Sbjct: 214 LLQGYTEASNVNVVNEMVQMIEVNRAYEANQKSVQTEDSMMDTL 257


>gi|254463756|ref|ZP_05077167.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium
           Y4I]
 gi|206684664|gb|EDZ45146.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium
           Y4I]
          Length = 261

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +A       L     N     E   S +  +    +     + + Y     V
Sbjct: 167 GQLLGQFTLASFTNPKGLEAIGSNLFT--ETEASGAATVTTAGEDGLGTLRQGYLEGSSV 224

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +   E++ LI+ ++ Y ++ K+I   D+M+
Sbjct: 225 DAVREVTELIEAQRGYEMNAKVISAVDQMM 254



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 31/150 (20%), Gaps = 28/150 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V         + ++    L   ++ +        +  +            S    
Sbjct: 63  PTGVQVGLGVRPAAVSVHLSQGALQQTNNDLDVAIDGNGYLEV------TLPSGQSAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
              L+ S E          +   +    + 
Sbjct: 117 DGALKRSAEGLIVTSDGFAVSPEITIPDDA 146


>gi|302389656|ref|YP_003825477.1| flagellar basal-body rod protein FlgC [Thermosediminibacter
          oceani DSM 16646]
 gi|302200284|gb|ADL07854.1| flagellar basal-body rod protein FlgC [Thermosediminibacter
          oceani DSM 16646]
          Length = 147

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M +      + +       +   I  NI N +     +   Y R+  +   
Sbjct: 1  MEIFRSLEISASGLTAQRLRMDVISNNIANVNTTRTEEGGPYRRQRVIFQE 51


>gi|52787553|ref|YP_093382.1| FlhP [Bacillus licheniformis ATCC 14580]
 gi|163119681|ref|YP_080952.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC
           14580]
 gi|52350055|gb|AAU42689.1| FlhP [Bacillus licheniformis ATCC 14580]
 gi|145903191|gb|AAU25314.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC
           14580]
          Length = 275

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 51/198 (25%), Gaps = 9/198 (4%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP- 342
              +    ++   L   +       G                  N     +         
Sbjct: 86  GSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDGAFYLTPAAGNANQMQLVTKEGHAVL 145

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               N           K        ++           +        P A       L  
Sbjct: 146 DENGNAIRFNQRYKHIKVDESGSVTVSSDNQGEAPLRFNLGIVRAVKPQALTEEGSNLFS 205

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
            +         N + +    +        + + +  +  V++ +E++ LI  ++SY +++
Sbjct: 206 VSDELRATALINLNGAGRQDI-------SLKQGFLESSNVDVSKEMTDLISSQRSYQMNS 258

Query: 463 KLIMFTDKMLQTLLEGVK 480
           + I   D+M+  L+  V+
Sbjct: 259 RAITMGDQMMG-LINSVR 275



 Score = 40.0 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A N      +Q  +I  N+ N D   Y  ++T  +  
Sbjct: 1  MLRSMITASNTMFELQKQIDNISHNLANTDTTGYKAKNTSFSEL 44


>gi|307266108|ref|ZP_07547653.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918890|gb|EFN49119.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 251

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 66/252 (26%), Gaps = 28/252 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           +L     A +     ++    +  N+ N +   Y R   +T+  P               
Sbjct: 1   MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPN 60

Query: 49  --------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V V T    + N  +      +  +        F  +          + S 
Sbjct: 61  GKIGRMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSF 117

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           T        + E Y        +  +  D + + + N   + + V ++R       +   
Sbjct: 118 TLSKDGYLVTQEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                        N  +   T             + + + ++    IS +    ++  V 
Sbjct: 178 KEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234

Query: 221 TSDGTTLFETVP 232
            +   TL + V 
Sbjct: 235 IAFDETLGKAVN 246



 Score = 41.9 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + +     VN  +E+  +I V ++Y  + K+++  D+ L   + 
Sbjct: 199 GKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246


>gi|222147571|ref|YP_002548528.1| flagellar basal-body rod protein [Agrobacterium vitis S4]
 gi|221734559|gb|ACM35522.1| flagellar basal-body rod protein [Agrobacterium vitis S4]
          Length = 263

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 70/211 (33%), Gaps = 4/211 (1%)

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
             +  +    +   S VP   N    +    + + +E+  ++  S  +    +  G   +
Sbjct: 46  QTEKAVGVANRANQSTVPEGANIGLGVQTAAVRTMNEQGELSETSNELDVAIVGRGYLQV 105

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP-DLINHYCDSFNKN 385
            +        T        S+ + +   G      +    +                  +
Sbjct: 106 QSPDGATTFYTRAGALNKDSDGNLVTTEGYKIIPNITIPTDATEVKISESGEVSVLQGDS 165

Query: 386 FIFDPVAGINTNVTLLEYARNSIGW---LEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
             +  +  + T+  +      +IG     E   S +    +     + ++ + Y  +  V
Sbjct: 166 STYTTLGQLETSAFVNPAGLKAIGDNLFQETASSGNPINGVPGDAGYGYLKQGYLESSNV 225

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +   E++ LI  +++Y +++K+I   D+M Q
Sbjct: 226 DSVTEITSLISAQRAYEMNSKVITTADEMAQ 256



 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 27/141 (19%), Gaps = 33/141 (23%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A    N        I  NI N +   + +     +                     
Sbjct: 3   ALAIASTGMNAQQTNLEVISNNIANINTTGFKKSRAEFSDLLYQTEKAVGVANRANQSTV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V     R+ N+      L   S+ +    + + +  ++           + 
Sbjct: 63  PEGANIGLGVQTAAVRTMNEQ---GELSETSNELDVAIVGRGYLQVQS-----PDGATTF 114

Query: 101 THYISKLRDSLESYSKNLSED 121
                 L    +         
Sbjct: 115 YTRAGALNKDSDGNLVTTEGY 135


>gi|253702433|ref|YP_003023622.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21]
 gi|251777283|gb|ACT19864.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21]
          Length = 237

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 36/149 (24%), Gaps = 13/149 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVTQR 56
           + +    A +   +A ++   I  N+ N++   +            NV       V +  
Sbjct: 1   MNSGIYAALSGNLSAQRRLDVISNNLANSNTAGFKADQIQFESVLANVKNPTQTPVFSND 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             + +     L    +A+             +     +               S      
Sbjct: 61  RYSTDYSPGALQRTENALDLALDG-------DGFFVVNTPQGPAYTRQGNFFRSQAGRLV 113

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREV 145
           N     +  +    A    +   +   EV
Sbjct: 114 NADGFEVQGSGGAIAIGGGKVEVSGNGEV 142


>gi|87306343|ref|ZP_01088490.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM
           3645]
 gi|87290522|gb|EAQ82409.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM
           3645]
          Length = 266

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 55/175 (31%), Gaps = 5/175 (2%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F             +  + +I  N +  +  + +      S     +   +
Sbjct: 94  LDWTIRGKGFFQVLDPTGQTYYTRAGNFSINANGEIVTGSAGVGRPLEPSITIPQDTTGI 153

Query: 369 AGYPDLINHYC---DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
               D I           +      +A       LL+   N     E N S +  +   +
Sbjct: 154 EVSSDGIVSVQRPGQQTLEEVGQIQLANFINPEGLLKLGDNLYS--ETNASSAAIVGNPN 211

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              F  + + +     V   +EL  LI  ++++ ++++ +   D++LQ +    +
Sbjct: 212 IDGFGSVEKGFLEASNVEPVQELVDLITTQRAFELNSQTVQAGDQILQLVSNLRR 266



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/134 (6%), Positives = 26/134 (19%), Gaps = 28/134 (20%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           MS+      A         +   I  N+ N +   + +                      
Sbjct: 1   MSV-QTLYTAATGMQTLQTKLDVISNNLANVNTTAFKKDRINFEDLFYDNRVLPGKLDGS 59

Query: 46  ---SPENVTVV---TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
              +P    +      +S   +           ++      + F  + +          +
Sbjct: 60  SNPTPTGTHIGMGVRVQSTQTDYQQGAFRETDRSLDWTIRGKGFFQVLD------PTGQT 113

Query: 100 PTHYISKLRDSLES 113
                     +   
Sbjct: 114 YYTRAGNFSINANG 127


>gi|224534494|ref|ZP_03675070.1| flagellar hook-basal body complex protein [Borrelia spielmanii
           A14S]
 gi|224514171|gb|EEF84489.1| flagellar hook-basal body complex protein [Borrelia spielmanii
           A14S]
          Length = 282

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDV--SLRPKIETEALEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/211 (5%), Positives = 35/211 (16%), Gaps = 40/211 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +      ++   +  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L    + +             +    
Sbjct: 61  PKGHLETAPIVGKLGTGVEENEI---YTIFEQGPLKTTGNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
               +              E      +   +         +      T   ++      A
Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKNGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFA 170

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                L   +   + +   +    I      
Sbjct: 171 SNPKRLVSEHENSWENYELLDTIRIVNFENP 201


>gi|224534284|ref|ZP_03674862.1| flagellar basal-body rod protein FlgC [Borrelia spielmanii A14S]
 gi|224514386|gb|EEF84702.1| flagellar basal-body rod protein FlgC [Borrelia spielmanii A14S]
          Length = 152

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|312962294|ref|ZP_07776785.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6]
 gi|311283221|gb|EFQ61811.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6]
          Length = 207

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/165 (8%), Positives = 29/165 (17%), Gaps = 33/165 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A+   +       +I  N+ N     + R                        
Sbjct: 1   MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      V +V  +          L      +      + F  + +          
Sbjct: 61  ELPSGLQLGTGVQIVGTQKN---FSAGNLQQTGQPLDMAINGRGFFQILQ------PDGT 111

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
           +                   +   L   VI  A+           
Sbjct: 112 TSYTRDGTFHLDSNGQIVTANGFSLEPAVIVPADAKTFTVGNDGT 156


>gi|322435952|ref|YP_004218164.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9]
 gi|321163679|gb|ADW69384.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9]
          Length = 262

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 49/217 (22%), Gaps = 3/217 (1%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           + +  G       +   +      +      +       +     +     G F      
Sbjct: 48  NMITPGSPATQSTVSAGLQIGLGTRTSATEIIQAQGDFNQTQNPLDLAIQGGGFFQIQQP 107

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D      +  S  +       +                 NV               +   
Sbjct: 108 DGTIAYTRNGSFHLNNQGTIITTEGMSLIPSITIPSNATNVTISPYGVVSATLPGQTAAA 167

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS-QVVFNHISESYSNTVGVN 443
                 +A       L     +         S +              + + Y     V+
Sbjct: 168 QLGTLQLANFANPGGLNSAGNSLFTQ--TTSSGNPVTDTPGGTSGVGTLEQGYLENSNVD 225

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  E   +I  +++Y  ++K++   D M Q +   ++
Sbjct: 226 VVTEFVQMILAQRAYESNSKVVHVADDMYQQINGMIR 262



 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/211 (4%), Positives = 35/211 (16%), Gaps = 4/211 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +  +       +I  N+ N+    +  R            +       ++ 
Sbjct: 1   MIRALYTAASGMSAQQANLDTIANNLANSATAGFRSRRVQFEDMIYQNMITPGSPATQST 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L          R   +     +                       +          
Sbjct: 61  VSAGLQIGLG----TRTSATEIIQAQGDFNQTQNPLDLAIQGGGFFQIQQPDGTIAYTRN 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
               + +    +     +    +       +  I            +             
Sbjct: 117 GSFHLNNQGTIITTEGMSLIPSITIPSNATNVTISPYGVVSATLPGQTAAAQLGTLQLAN 176

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             +          +  Q  S    ++     
Sbjct: 177 FANPGGLNSAGNSLFTQTTSSGNPVTDTPGG 207


>gi|216264021|ref|ZP_03436015.1| flagellar basal-body rod protein FlgC [Borrelia afzelii ACA-1]
 gi|215980065|gb|EEC20887.1| flagellar basal-body rod protein FlgC [Borrelia afzelii ACA-1]
          Length = 152

 Score = 61.2 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|319648038|ref|ZP_08002255.1| FlhP protein [Bacillus sp. BT1B_CT2]
 gi|317389673|gb|EFV70483.1| FlhP protein [Bacillus sp. BT1B_CT2]
          Length = 271

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 51/198 (25%), Gaps = 9/198 (4%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP- 342
              +    ++   L   +       G                  N     +         
Sbjct: 82  GSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDGAFYLTPAAGNANQMQLVTKEGHAVL 141

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
               N           K        ++           +        P A       L  
Sbjct: 142 DENGNAIRFNQRYKHIKVDESGSVTVSSDNQGEAPLRFNLGIVRAVKPQALTEEGSNLFS 201

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
            +         N + +    +        + + +  +  V++ +E++ LI  ++SY +++
Sbjct: 202 VSDELRATALINLNGAGRQDI-------SLKQGFLESSNVDVSKEMTDLISSQRSYQMNS 254

Query: 463 KLIMFTDKMLQTLLEGVK 480
           + I   D+M+  L+  V+
Sbjct: 255 RAITMGDQMMG-LINSVR 271



 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46
           +Q  +I  N+ N D   Y  ++T  +  
Sbjct: 12 QKQIDNISHNLANTDTTGYKAKNTSFSEL 40


>gi|58039490|ref|YP_191454.1| flagellar hook protein FlgE [Gluconobacter oxydans 621H]
 gi|58001904|gb|AAW60798.1| Flagellar hook protein FlgE [Gluconobacter oxydans 621H]
          Length = 411

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/383 (10%), Positives = 114/383 (29%), Gaps = 2/383 (0%)

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           NS T        S E Y  N      G+++ D+     +    +   V          I 
Sbjct: 31  NSQTTGYKASTTSFEDYVTNNELANDGESLSDSVAATTRQHTDNQCMVTTSTNSTALAIS 90

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                     +  +  +  +           DF   ++  L   S        V   +  
Sbjct: 91  GNGFFNVVQATGQSNDSTPVLGTQQYYTRNGDFSQDKNGYLVNTSGYYLEGYNVDATSGT 150

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
           +  +     +  T+          + T T +S+      +  ++   +        +  +
Sbjct: 151 LGTSLSAIQVPSTIAFRPTESTKLTATGTLDSSSSKTVDMSTTAYDSTGAASTVDLSWTK 210

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           + D+   +                 +      +  +      +       N        T
Sbjct: 211 LSDTTWAVKDVNDTTGTSNSATVTFDSSGAVSSVTSQDSTGASSTSSSSFNYTGSPQDMT 270

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           + ++     + + +           ++  ++     ++  + + +++     P+      
Sbjct: 271 VSLSGVTLGSANTVSMTSDSVTTGTFSGISMETDGSVMATFDNGYSQLVAKIPLTTFADP 330

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            +L   A+N   +   ++S S  ++  +      ++         +L  +LS LI  +Q+
Sbjct: 331 NSLS--AQNGQAYTATSQSGSPQINAVNTNGAGTLTTGSIEESTTDLTGDLSKLIVAQQA 388

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y  + K++   D++LQT L  ++
Sbjct: 389 YGANTKVVSTADQLLQTTLAMIQ 411



 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/416 (10%), Positives = 103/416 (24%), Gaps = 26/416 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN--------VTVV 53
           S++   + A +  N  S  F  +  NI N+    Y    T       N            
Sbjct: 3   SIINAVHTAVSGLNAQSHAFTDLSNNIANSQTTGYKASTTSFEDYVTNNELANDGESLSD 62

Query: 54  TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-----THYISK 106
           +  +  +   D    +   +++         F  + +     +                 
Sbjct: 63  SVAATTRQHTDNQCMVTTSTNSTALAISGNGFFNVVQATGQSNDSTPVLGTQQYYTRNGD 122

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                  Y  N S   L    +D          T    +  I+  +        S     
Sbjct: 123 FSQDKNGYLVNTSGYYLEGYNVDATSG------TLGTSLSAIQVPSTIAFRPTESTKLTA 176

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
              L   +      + + +D+       D+   K+S+    +T    + +    TS+  T
Sbjct: 177 TGTLDSSSSKTVDMSTTAYDSTGAASTVDLSWTKLSD----TTWAVKDVNDTTGTSNSAT 232

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +       ++       T  S ++    +      +   ++    + +   +  +   + 
Sbjct: 233 VTFDSSGAVSSVTSQDSTGASSTSSSSFNYTGSPQDMTVSLSGVTLGSANTVSMTSDSVT 292

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
                 ++    GS         +              +  +            +   + 
Sbjct: 293 TGTFSGISMETDGSVMATFDNGYSQLVAKIPLTTFADPNSLSAQNGQAYTATSQSGSPQI 352

Query: 347 NPSFLRDGGSVSKK-FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
           N       G+++      +  +L G    +     ++  N      A      TL 
Sbjct: 353 NAVNTNGAGTLTTGSIEESTTDLTGDLSKLIVAQQAYGANTKVVSTADQLLQTTLA 408


>gi|291528558|emb|CBK94144.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1]
          Length = 272

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 69/252 (27%), Gaps = 6/252 (2%)

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +       +      +    +    + +   S     K         + V    +   +
Sbjct: 23  ANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDAKPVGAQVGLGTRVAATTSTYTQ 82

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    ++          V G                       +    + NP    
Sbjct: 83  GPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGNGQTILTDSQGNPVMDT 142

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---PVAGINTNVTLLEYARNSIG 409
           +G  ++     + + ++   D    Y  +       +    V   N    L + + + + 
Sbjct: 143 NGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQFNNPSGLEKQSGSLLA 202

Query: 410 WLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                 S +  L   +  + N  +   Y     V + +E+  LI  +++Y +++K I   
Sbjct: 203 --ATANSGNPMLEAANPALKNSKVVTGYLEGSNVQVADEMVNLIVAQRAYELNSKAITTA 260

Query: 469 DKMLQTLLEGVK 480
           D ML+T     +
Sbjct: 261 DSMLETANNLRR 272



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49
           ++     A            +I  N+ N +   +  + T             + S     
Sbjct: 1   MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         +         L++             F A++   +   +  N    
Sbjct: 61  KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120

Query: 103 ------YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   + L DS  +   + + +I+      +AE++    + +   +       +   
Sbjct: 121 WSQYGNGQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQ 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
            + +                +     S +   +  + 
Sbjct: 181 RIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEAANP 217


>gi|209884526|ref|YP_002288383.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans
           OM5]
 gi|209872722|gb|ACI92518.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans
           OM5]
          Length = 262

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 4/177 (2%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
           P+ G+            I+  D+        +   + Q R   +                
Sbjct: 88  PVGGDLNIAVRGEGYFKIQLPDSTYAYTRDGSFTTDGQGRIVNAQGNFLQPTIAVPQNAS 147

Query: 366 KNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
           +        ++                +        L     N         S      +
Sbjct: 148 QLTINAQGQVSVMLPGSTTPSVIGQIGLTRFINKAGLQSIGDNLFTD--TPASGPPQDGI 205

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +   F  I +       V +  E+S LI  +++Y ++ K++   D+M+Q+    ++
Sbjct: 206 ANTDGFGDIQQGNLEQANVEVVSEISDLIAAQRAYEMNAKVVSAADQMMQSTTGMLR 262



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 8/41 (19%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A             I  NI N     Y ++       
Sbjct: 3  ALYTAATGMAAQELSVQVISNNIANLRTTGYKKQMASFQDL 43


>gi|111115118|ref|YP_709736.1| flagellar basal body rod protein FlgC [Borrelia afzelii PKo]
 gi|110890392|gb|ABH01560.1| flagellar basal-body rod protein [Borrelia afzelii PKo]
          Length = 152

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L +  N A         +   I  NI N           Y R+  +  
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|147678426|ref|YP_001212641.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum
          SI]
 gi|146274523|dbj|BAF60272.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum
          SI]
          Length = 147

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 9/68 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN---------YVRRDTMTTISPENVT 51
          M L   F  + +       +   I  NI N +            Y RR  +     + V 
Sbjct: 1  MGLFDSFAISASGLTAERLRLDLISNNIANMNTAGRPDDPAVPAYRRRFPVFAQVLQEVR 60

Query: 52 VVTQRSEN 59
                  
Sbjct: 61 SAGTARPR 68


>gi|283782100|ref|YP_003372855.1| flagellar basal body FlaE domain-containing protein [Pirellula
           staleyi DSM 6068]
 gi|283440553|gb|ADB18995.1| flagellar basal body FlaE domain protein [Pirellula staleyi DSM
           6068]
          Length = 815

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/439 (7%), Positives = 94/439 (21%), Gaps = 34/439 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------------- 45
           M L +    A      A  Q   +  N+ N+    +   D++                  
Sbjct: 1   MGLASALTTALTGMTAAETQIDVVGNNLANSQTVGFKASDSVFATQFLQTQSLGSGPTSG 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     V        +     +   S+        + F  +++         
Sbjct: 61  SGGTNPRQTGLGTRVAEIT---PDFTQGTIEVSSNPSDLAIQGEGFFIVQD------SQG 111

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                   + + + ++     +   +    +D   E+             + + A  +  
Sbjct: 112 EQVYTRNGQFKTNSDNELVTTTGQRVLGFGVDQDFEIQTTELVPLEI--PLGSAAVAQAT 169

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +           V + A   ++A+  DA       D     ++ I   +     +   
Sbjct: 170 QNVYLQGVLSPSGDVADTAAVIQSATLGDALIPRPDVDASTAAVAAIPSSAGTTSTHTQG 229

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
              T     ++      ++     S   +     +     + +++           +  Q
Sbjct: 230 AGGTHAEGAVYRYRITYVDDSGTESLASSEILVSVPAGDTLANNSITLNNLPAATGSYSQ 289

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
           +         +    +     G     D     S         +G         +   E 
Sbjct: 290 VNIYRTASGGSDFFLLDTAAAGGSYVDDNSVALSATELDNSTINGNYSYVVTYYRAGEEE 349

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
              +                      +   +  Y  +  +   + +    +         
Sbjct: 350 SRPSLILGPQNVVNGRVQLTDLPLPPSGPGIPAYDTVRIYRNLAGDSTSFYLVGEVAPGE 409

Query: 398 VTLLEYARNSIGWLEKNRS 416
                 A   I  L    +
Sbjct: 410 EFTDNRADAEISDLSILTN 428



 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/191 (9%), Positives = 44/191 (23%), Gaps = 2/191 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           LD     +       D               +      +   +   +   V+       S
Sbjct: 627 LDGADISVGTGLVTFDGQGNLVSVTNDRVSVERRNIPSSDPLEFRIDFSQVSGLSTETSS 686

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                   S         +     +   + +  +++     +A       L +  +N   
Sbjct: 687 LAASRQDGSSAGTLTSYIIGEDGVIRGVFSNGVSRDLGQVRLARFANPAGLEQRGQNLFA 746

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S               I          ++ + L  L+     Y  + ++I    
Sbjct: 747 Q--GVNSGLPVEGNPGNDGMGSIISGAVELSNTDIGKNLIDLVLATTQYRGNARVITAAQ 804

Query: 470 KMLQTLLEGVK 480
           ++L  LL   +
Sbjct: 805 ELLDELLNLRR 815


>gi|167038784|ref|YP_001661769.1| hypothetical protein Teth514_0111 [Thermoanaerobacter sp. X514]
 gi|300913631|ref|ZP_07130948.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561]
 gi|307723354|ref|YP_003903105.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513]
 gi|166853024|gb|ABY91433.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacter sp. X514]
 gi|300890316|gb|EFK85461.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561]
 gi|307580415|gb|ADN53814.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513]
          Length = 266

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 2/158 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D       +    +       P     G  +         +++    +     D  
Sbjct: 111 YYTRDGSFKLSPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGT 170

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        LL    N   +     S         +     + + +  T  +
Sbjct: 171 TQEVATLGIYNFVNTQGLLSVGSNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNI 228

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 229 QIVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/261 (8%), Positives = 62/261 (23%), Gaps = 25/261 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPEN- 49
           ++     A +           I  N+ N +   + R                     +  
Sbjct: 1   MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60

Query: 50  ----VTVVTQR--SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  V  R  +  K+  +  L    + +      + F A+                 
Sbjct: 61  PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVL------GPDGKVYYTR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               + S    +  L        + D+   +V +       V  +   + K  +     +
Sbjct: 115 DGSFKLSPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEV 174

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   V    +    ++ ++  +   Q          +  +       +++ +    
Sbjct: 175 ATLGIYNFVNTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEM 234

Query: 224 GTTLFETVPRDINFEKMNSYT 244
              +      +IN + + +  
Sbjct: 235 VDMIAAQRAYEINSKAIQAAD 255


>gi|110677659|ref|YP_680666.1| flagellar basal body rod protein FlgC [Roseobacter denitrificans
          OCh 114]
 gi|163733139|ref|ZP_02140583.1| flagellar basal-body rod protein FlgC [Roseobacter litoralis Och
          149]
 gi|109453775|gb|ABG29980.1| flagellar basal-body rod protein FlgC [Roseobacter denitrificans
          OCh 114]
 gi|161393674|gb|EDQ17999.1| flagellar basal-body rod protein FlgC [Roseobacter litoralis Och
          149]
          Length = 129

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS  +   +   +     + +   +  NI NAD   Y R+      +     V T  +  
Sbjct: 1  MSEFSKSLDVTTSGLKAQATRLRHLSENISNADTPGYRRKLVSFETAFGGQGVSTVETSR 60

Query: 60 KNMFDKVL 67
            +    L
Sbjct: 61 VRLDQSTL 68


>gi|115523556|ref|YP_780467.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris
           BisA53]
 gi|115517503|gb|ABJ05487.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris
           BisA53]
          Length = 262

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 44/185 (23%), Gaps = 4/185 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I +         + +          I+  D         +   +   R   S        
Sbjct: 80  IMTQGTLSTTGNDLDMAIRGEGFFKIQMPDGTYTYTRDGSFTTDNTGRIVTSNGNPLQPT 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKN--FIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                 +          +                 +        L     N     E   
Sbjct: 140 ITIPQGSSGLTINAQGQVTVIAQGSTTATLLGQIGLTRFINKTGLQPIGDNLFT--ETPA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +   +  I +       V    E+S LI  +++Y ++ K++   D+MLQ+ 
Sbjct: 198 SGPPQDGTANADGYGDIQQQTLEQANVEAVTEISDLISAQRAYEMNAKVVSAADQMLQST 257

Query: 476 LEGVK 480
               +
Sbjct: 258 SNMFR 262



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/181 (7%), Positives = 29/181 (16%), Gaps = 34/181 (18%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI N     + ++                          
Sbjct: 3   ALYTAATGMMAQELNVQVISNNIANMRTTAFKKQRAAFQDLIYDHVKRVGAQASDQGTIL 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGVDIGGGVKTVGTPRI---MTQGTLSTTGNDLDMAIRGEGFFKIQ------MPDGTYT 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                             + + L  T+           N   +     +      +  +I
Sbjct: 114 YTRDGSFTTDNTGRIVTSNGNPLQPTITIPQGSSGLTINAQGQVTVIAQGSTTATLLGQI 173

Query: 161 S 161
            
Sbjct: 174 G 174


>gi|291523980|emb|CBK89567.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629]
          Length = 272

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 64/250 (25%), Gaps = 2/250 (0%)

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +       +      +    +    + +   S     K         + V    +   +
Sbjct: 23  ANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDAKPVGAQVGLGTRVAATTSTYTQ 82

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    ++          V G                       +    + NP    
Sbjct: 83  GPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGNGQTILTDSQGNPVMDT 142

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           +G  ++     + + ++   D    Y  +       +    +          + S   L 
Sbjct: 143 NGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQFNNPSGLEKQSGSLLA 202

Query: 413 KNRSDSHDLHMKSQVVFNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
              +  + +   +        +   Y     V + +E+  LI  +++Y +++K I   D 
Sbjct: 203 ATANSGNPMLEAANPALKSSKVVTGYLEGSNVQVADEMVNLIVAQRAYELNSKAITTADS 262

Query: 471 MLQTLLEGVK 480
           ML+T     +
Sbjct: 263 MLETANNLRR 272



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49
           ++     A            +I  N+ N +   +  + T             + S     
Sbjct: 1   MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         +         L++             F A++   +   +  N    
Sbjct: 61  KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120

Query: 103 ------YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   + L DS  +   + + +I+      +AE++    + +   +       +   
Sbjct: 121 WSQYGNGQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQ 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
            + +                +     S +   +  + 
Sbjct: 181 RIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEAANP 217


>gi|114570497|ref|YP_757177.1| flagellar basal body rod protein FlgG [Maricaulis maris MCS10]
 gi|114340959|gb|ABI66239.1| flagellar basal-body rod protein FlgG [Maricaulis maris MCS10]
          Length = 261

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 4/177 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I             +          ++  D       +    V+       S        
Sbjct: 80  ITEQGALSNTGNPFDLAVSGEGYFRVQMPDGSDGFTRAGNFAVSGDGELVTSEGYTVAPG 139

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                   +        +    D     +      +A       L     N   +LE   
Sbjct: 140 IAIPNGARQIEINIQGQVQVQIDGQTDMQTVGQIELATFFNQAGLEAIGGNL--FLETAA 197

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           S S  L       F  I + +  T  VN   E++ LI+ +++Y ++ ++I  +D+M+
Sbjct: 198 SGSASLGTPGSPGFGDIQQGFVETSNVNSVSEITALIQAQRAYEMNARVITASDEMM 254



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/172 (8%), Positives = 29/172 (16%), Gaps = 16/172 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT---------------TISPENV 50
               A             I  N+ N +   + R+                   + +   V
Sbjct: 3   ALTTAATGMQAQQLNVEVISNNLANMNTTGFKRQRAEFQDLLYQNVQQMGAASSDAGTIV 62

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRD 109
               Q                 A+             E          +           
Sbjct: 63  PTGVQVGLGVQTASIYRITEQGALSNTGNPFDLAVSGEGYFRVQMPDGSDGFTRAGNFAV 122

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
           S +          +   +           N   +   +I    D +   +I 
Sbjct: 123 SGDGELVTSEGYTVAPGIAIPNGARQIEINIQGQVQVQIDGQTDMQTVGQIE 174


>gi|89068731|ref|ZP_01156117.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516]
 gi|89045694|gb|EAR51756.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516]
          Length = 261

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +     +  L     N   +L+   S      +  +     I + +     VN+
Sbjct: 169 ELGQLTLTTFMNDSGLRPVGNNL--FLQSEASGEPVPAVPGEPGIGIIRQGHLEGSNVNI 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            ++++ LI  +++Y +++K I   D+M+ T    V+
Sbjct: 227 IQQITDLIAAQRAYEMNSKAIETADQMMNTA-NQVR 261



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 27/134 (20%), Gaps = 28/134 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI NA+   +                             
Sbjct: 3   ALGIATTGMLAQQTNVDVISNNIANANTTGFKSSRAAFQDLIYQNVAREGALTAEDGTVR 62

Query: 47  PENVTVV-TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +    ++      +    L A  + +        + A+      +    +     
Sbjct: 63  PTGVDIGLGVQTVGTVRLNTQGGLIATGNDLDLAIDGPGYFAV------NLPDGSQGYTR 116

Query: 104 ISKLRDSLESYSKN 117
               R + E    N
Sbjct: 117 DGGFRVNAEGQLVN 130


>gi|46202499|ref|ZP_00053126.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum
           magnetotacticum MS-1]
          Length = 354

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 5/330 (1%)

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            D     +    N  R   +   V+ ++    AS            V +     I   +T
Sbjct: 21  TDGFGTTQTLTMNWTRTGGDTWQVDFSLPANPASGSVGTITGSPVTVTMDANGAITAPTT 80

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                    +               IN         T +      D    S N G +   
Sbjct: 81  SASGTGFADLTVDWSAGPTAQSTASINLSSNKPTLSTVDETIAVYDNAYNSHNLGLSFEH 140

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                       V                 S              P            N 
Sbjct: 141 ASNGQWYLRMKPVAAEGTVTALMADGTNYTSSIPITFDGAGKILTPAKASFTVGWTAANA 200

Query: 330 LCQGISETICVNPQYRSNPSFL----RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
               IS  +    Q+  + S                  +   +     ++ H+ +  ++ 
Sbjct: 201 GSSTISLDLAKLTQFSGDTSTKMSVKNIDQDGYASGTMDQVEIDTAGKVVAHFDNGKSRT 260

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
               PVA   +   L +    ++    +   D     + +Q     I  S      V L+
Sbjct: 261 IFQIPVATFVSADQL-DPISGTVFRATEQAGDITIAAISAQGSGASIVASSLEASNVALE 319

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           ++ S +I  +++Y+ +  +    D+M QT+
Sbjct: 320 DQFSKMIVTQKAYSTNANVFKTADEMTQTV 349


>gi|260222467|emb|CBA32060.1| hypothetical protein Csp_D30230 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 188

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 29/142 (20%), Gaps = 17/142 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPENVTVVT 54
            F    +  N++S+    I  NI NA+        T               +      V+
Sbjct: 2   SFQTGLSGLNSSSKNLDVIGNNIANANTVGMKASRTEFAALIATQLGPAGGNLTPGIGVS 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +  +      +    + +        F  +           +       + +      
Sbjct: 62  VGTVAQQFTQGNISITGNNLDVAINGNGFFQV------TMPDQSRAYTRDGQFKLDDVGN 115

Query: 115 SKNLSEDILGKTVIDNAEEVVQ 136
                   +     D       
Sbjct: 116 LITNGGANVMGYPTDLLGNRTS 137


>gi|322421663|ref|YP_004200886.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18]
 gi|320128050|gb|ADW15610.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18]
          Length = 238

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 40/187 (21%), Gaps = 6/187 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVTQR 56
           + A    A     +A ++   I  N+ NA    +            +V       V +  
Sbjct: 1   MNAGMYAALTGNLSAQRRLDVISNNLANASTTGFKADQIQFESILASVKNSTEGPVFSND 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             + +     L    +A+        F  +            +          + + Y  
Sbjct: 61  RYSTDFSSGGLQRTDNALDVALEGDGFFVVNTPQGTAYTRQGNFHRGPGGKLVTADGYEV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +        E       +    V    A  D      +      L        A
Sbjct: 121 QGGGGTVTLNGGSKIEIGSNGQVSVDGNVVGNIAVVDFPKPYALEKAGNGLYLPANPQTA 180

Query: 177 IKFKTAS 183
               TA 
Sbjct: 181 TTASTAG 187


>gi|78221651|ref|YP_383398.1| hypothetical protein Gmet_0430 [Geobacter metallireducens GS-15]
 gi|78192906|gb|ABB30673.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 242

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 29/144 (20%), Gaps = 18/144 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENVTVV 53
           + +    A      A ++   +  N+ N +   + +                 P   T  
Sbjct: 1   MNSGIYSALTGNVAAMKRLDVLSNNLANVNTPGFKKDRMTFESMLQTVGAQPRPGGGTDA 60

Query: 54  TQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
              +E     D     +    +          F A+                     R  
Sbjct: 61  PVFAETTFFTDYSPGSVKQTGNPFDLAIDGDGFFAV------TTADGQRAYTRQGNFRLD 114

Query: 111 LESYSKNLSEDILGKTVIDNAEEV 134
                       +   V+    +V
Sbjct: 115 STGRLVTADGAQVAGGVVIAGGKV 138



 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +      + V    + +       VN  +E+  LI+  + + + +K++   D +
Sbjct: 178 ADPQATPNPVTGEKVMQGAIEESNVNTVQEMVQLIETNRYFEMCSKVVKAYDDL 231


>gi|254699461|ref|ZP_05161289.1| flagellar basal body rod protein FlgG [Brucella suis bv. 5 str.
          513]
 gi|261749912|ref|ZP_05993621.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|261739665|gb|EEY27591.1| predicted protein [Brucella suis bv. 5 str. 513]
          Length = 77

 Score = 60.8 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 10/41 (24%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A    N        I  NI N +   + R     T  
Sbjct: 3  ALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDL 43


>gi|169831913|ref|YP_001717895.1| flagellar basal-body rod protein FlgC [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169638757|gb|ACA60263.1| flagellar basal-body rod protein FlgC [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 139

 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 16/71 (22%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI--------- 45
          MSL   F  + +       +   I  NI NA      +   Y R   +            
Sbjct: 1  MSLFKSFGISGSGMTAERLRLDLISNNIANAHTTRTREGGPYRREVPVFAQYLERFRGRG 60

Query: 46 -SPENVTVVTQ 55
           +   V V   
Sbjct: 61 FAGAGVRVTAV 71


>gi|114765244|ref|ZP_01444376.1| Flagellar basal body rod protein [Pelagibaca bermudensis HTCC2601]
 gi|114542379|gb|EAU45407.1| Flagellar basal body rod protein [Roseovarius sp. HTCC2601]
          Length = 261

 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 2/164 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       +    + D D    +  S  +    Q  ++  F  D G V       V+  
Sbjct: 93  LDLAIDGRGYFTVNLPDGDQAYTRDGSFRLSAEGQIVNHQGFEIDPGVVLPDNTTAVEIS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                      D          +     +  +     N +       S      +     
Sbjct: 153 ETGIVSAYVEGDPIPVEVGQLTLTTFVNDAGMRPLGNNLLE--ATVASGDAIPALPGDAG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              + + Y     V++  +++ LI+ +++Y +++K I   D+M+
Sbjct: 211 VGILRQGYLEASNVDIIRQITDLIQAQRAYEMNSKAIETADQMM 254



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 24/137 (17%), Gaps = 34/137 (24%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI NA+   +       T                     
Sbjct: 3   ALGIAATGMMAQQTNVDVISNNIANANTTGFKSARASFTDLIYENQSREGAVTAEEGTTR 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V     N       L    S +      + +  +      +    +  
Sbjct: 63  PIGLDIGLGVRSVGTLRLN---TQGGLTQTESQLDLAIDGRGYFTV------NLPDGDQA 113

Query: 101 THYISKLRDSLESYSKN 117
                  R S E    N
Sbjct: 114 YTRDGSFRLSAEGQIVN 130


>gi|195952534|ref|YP_002120824.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932146|gb|ACG56846.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 263

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 67/263 (25%), Gaps = 6/263 (2%)

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           ++ +  T+      +  N + +++     ++        V        V    ++     
Sbjct: 1   MFRAMWTSAAGMTAQQQNLDVISNNMANVDTVGYKQLQPVFDDLIYQTVKDPGMETSQNS 60

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
           ++ +               I +           +          +   D  +    +  +
Sbjct: 61  QNPIGYQLGLGAYIDGTYGIFTQGNVQQTGNPLDVAIQGNGFFQVAMPDGTIAYTRNGQL 120

Query: 339 CVNPQYR---SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            ++       ++   ++   +V            G   +         +      +A   
Sbjct: 121 QLDANGDLVTADGYLIQPQITVPPNATSVNIGPDGTVAVTIPGQQGV-QTVGQLQMANFV 179

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L     N         S +  +          +   Y+    VN+  E+  LI  E
Sbjct: 180 NPAGLKRIGNNLFEQ--TQASGNPIVSNPGTQGLGTLLSGYTEASNVNIVNEMVNLIIAE 237

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
            +Y  ++K I   + ML T    
Sbjct: 238 NAYQFNSKGITAANTMLSTAANL 260



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/270 (5%), Positives = 53/270 (19%), Gaps = 10/270 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      +        Q    I  N+ N D   Y +   +             ++     
Sbjct: 1   MFRAMWTSAAGMTAQQQNLDVISNNMANVDTVGYKQLQPVFDDL-------IYQTVKDPG 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +   ++ +    Q  L    +    + +  +         ++   +     +       
Sbjct: 54  METSQNSQNPIGYQLGLGAYIDGTYGIFTQGNVQQTGNPLDVAIQGNGFFQVAMPDGTIA 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +      +            +Q           + I            +      +T 
Sbjct: 114 YTRNGQLQLDANGDLVTADGYLIQPQITVPPNATSVNIGPDGTVAV---TIPGQQGVQTV 170

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            +    +F++   +     +                     GT L               
Sbjct: 171 GQLQMANFVNPAGLKRIGNNLFEQTQASGNPIVSNPGTQGLGTLLSGYTEASNVNIVNEM 230

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
             +    N    +   +++          +
Sbjct: 231 VNLIIAENAYQFNSKGITAANTMLSTAANL 260


>gi|266621929|ref|ZP_06114864.1| flagellar hook-associated protein 1 [Clostridium hathewayi DSM
           13479]
 gi|288866402|gb|EFC98700.1| flagellar hook-associated protein 1 [Clostridium hathewayi DSM
           13479]
          Length = 87

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 30/78 (38%)

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           E+       L  ++  +      S  +   +        GV+L EE   ++   ++Y+  
Sbjct: 5   EFITGYTNTLGTDKKTNDSRLKASLAIAESVESDRMGVSGVSLNEEGINMMTYNKAYSAL 64

Query: 462 NKLIMFTDKMLQTLLEGV 479
            +L+   D+ L  ++  +
Sbjct: 65  GRLMTTMDEQLDMIINQM 82


>gi|168705106|ref|ZP_02737383.1| flagellar basal-body rod protein FlgG [Gemmata obscuriglobus UQM
           2246]
          Length = 261

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 55/252 (21%), Gaps = 2/252 (0%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                    +  ++    S++       +        A              S   I   
Sbjct: 12  GIRAASTYLDVTSNNIANSDTPGYKTGQITFQDQLYRAADPVGAPTTGVTPPSGTQIGSG 71

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
            + +         +  +        + G      I    +         +  N      P
Sbjct: 72  VVVDAITGKFTQGAALESTGRFDLAIQGEGFFQVILPDGSTGYTRAGNFVTDNTGQLVTP 131

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
              R    +      +   +A    +     +   +      +        L     N  
Sbjct: 132 QGYRLVSDLIVPANTSSITVAPDGTVTAALDNGTAQVIGQVTLTRFVNPGGLSRSGDNVY 191

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                  +        +      +         V L  EL  LI  +Q++  + + +   
Sbjct: 192 T--ATPAAGDAINGAPNTNGIGSVESGRLEQSNVELANELVNLIVAQQAFRFNTQALQLE 249

Query: 469 DKMLQTLLEGVK 480
            ++LQ   + ++
Sbjct: 250 SQVLQVTTDLIR 261



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 41/220 (18%), Gaps = 26/220 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           L +    + +    AS        NI N+D   Y                          
Sbjct: 2   LASAITSSASGIRAASTYLDVTSNNIANSDTPGYKTGQITFQDQLYRAADPVGAPTTGVT 61

Query: 45  --ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                +  + V   +             +         + F  +           ++   
Sbjct: 62  PPSGTQIGSGVVVDAITGKFTQGAALESTGRFDLAIQGEGFFQVI------LPDGSTGYT 115

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                               L   +I  A                +     + I      
Sbjct: 116 RAGNFVTDNTGQLVTPQGYRLVSDLIVPANTSSITVAPDGTVTAALDNGTAQVIGQVTLT 175

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
                  L+   D +   T +  DA +     + +    S
Sbjct: 176 RFVNPGGLSRSGDNVYTATPAAGDAINGAPNTNGIGSVES 215


>gi|289666055|ref|ZP_06487636.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 385

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/369 (7%), Positives = 93/369 (25%), Gaps = 5/369 (1%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                  +  T      + +    +       +  +      ++       +  ++  +A
Sbjct: 5   LVVATTASKLTTVADPYQPTKLQVAMQTQGQNVSLSASSLGGQIGGLLEFRSSVLEPTQA 64

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGIST 209
           +  +      S      S+   +  A+     +        +  +     +S     +S 
Sbjct: 65  ELGRLAVGMASTFNAGHSQGMDLYGAMGGNFFNIGSPTTAANPNNTGSASLSASFSNMSA 124

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
           +   N  +    ++      +    +      + +     N + +      ++    + +
Sbjct: 125 VDGQNVTLSFDGTNWKATNASTGSAVPMTGTGTASNPLVLNGVSMVVGGTPASGDKFLLQ 184

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN----SENVPGLFIADGIKD 325
                   +  ++    +       +      ++      +    +   P L     ++ 
Sbjct: 185 PTAGLAGSLSVAITDPSRIAAATPVKATATIANQGSGKISDVKVTNAQNPALLTPSSVEF 244

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
           +D                 ++  +              +   +       +   ++    
Sbjct: 245 IDANQYTINGAGPFAYTAGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLA 304

Query: 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
            I D  A     VTL          +      +       +V+ +    S  +  GVNL 
Sbjct: 305 KIDDAKALSGGTVTLNGALSGLTTSVGSAARAASYSADAQKVINDQAQASRDSISGVNLD 364

Query: 446 EELSFLIKV 454
           EE + ++K+
Sbjct: 365 EEAANMLKL 373


>gi|157738166|ref|YP_001490850.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018]
 gi|157700020|gb|ABV68180.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018]
          Length = 583

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/462 (7%), Positives = 113/462 (24%), Gaps = 24/462 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE 58
           +++      +  +N  +  +    NI N+    +   +         +      V+ +S 
Sbjct: 1   MISALWNGVSGISNYDKGISVESNNIANSSTTGHKLDEITFADMLYTNSGYGKGVSTQSI 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           +K      +++    +      + F  + +                   + + + + +  
Sbjct: 61  SKQFAQGSINSSGGTLDMAIDGKGFFIVSDKAGEI------YYTRAGDFQQTKDGWLQTQ 114

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               +   V  +      N   +    +  +      I      +    ++ T       
Sbjct: 115 DGMNVLGLVPQSKLISSTNPQDTMFTTEYSKNVVSTNINDGNGTINNINAKTTDYTKTAT 174

Query: 179 FKTAS--KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
              +S    +      + + +   I++ +            V   S  + +  +      
Sbjct: 175 ADDSSLKGDNYKSAQAKINDVDALITDYLNKLNKYDGTQASVASVSQISKVDFSSKFSNL 234

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK------GKIKALLQIRDSVVPIFQNQL 290
             + NS ++  +     +      +     +         + +A   + D      Q Q+
Sbjct: 235 LSEGNSISLNIDGKNFSVAFNNDGTASQQDMQDIYNFLSPEGRATYGLSDPSTIPTQTQV 294

Query: 291 DEMARVLIG-SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           D++   +   +  +  P +  +E                         +     Y +  +
Sbjct: 295 DDLFSAIPDQAVIDAMPTSTPAEIAAKAAAQAQKDQAVTSYQTAYQARVDAQTSYNTAKN 354

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
            +     ++ K        A   D +                A +N        ++ ++ 
Sbjct: 355 AISAYKDLADKISNTAGYSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVT 414

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
                 +         +         +     V    E + L
Sbjct: 415 --GSGMAMVDSAKDALKEAVEKAGGKFLEITNV---MEYANL 451



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/458 (11%), Positives = 108/458 (23%), Gaps = 33/458 (7%)

Query: 24  IVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF 83
            + NI NA   +Y +  T    S +               D    A +       L+  +
Sbjct: 158 TINNI-NAKTTDYTKTATADDSSLKG--------------DNYKSAQAKINDVDALITDY 202

Query: 84  EALKEMMSADDHYNNSPTHYIS-KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
                          S +            +     +   L     + +     +   S 
Sbjct: 203 LNKLNKYDGTQASVASVSQISKVDFSSKFSNLLSEGNSISLNIDGKNFSVAFNNDGTASQ 262

Query: 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
           +++Q I      E            +        I  +T          DQ  +     S
Sbjct: 263 QDMQDIYNFLSPEGR---------ATYGLSDPSTIPTQTQVDDLFSAIPDQAVIDAMPTS 313

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
               I+             +   T      R       N+      +     D +  ++ 
Sbjct: 314 TPAEIAAKAAAQAQKDQAVTSYQT--AYQARVDAQTSYNTAKNAISAYKDLADKISNTAG 371

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
             ++V  G +     I      I   +L++       S            +     + + 
Sbjct: 372 YSASVKDGVLTVESLIAGKSFNITDAKLNDTGVNATVSQEAVTGSGMAMVDSAKDALKEA 431

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
           ++    K  +  +     N              ++        +        +       
Sbjct: 432 VEKAGGKFLEITNVMEYANLGSYGTSDLNLRLDTLGLVEGDFGEASVSDDGFVFVTSGDN 491

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
                    A       L     N         S +           N I E       V
Sbjct: 492 KFLVGRVSTAAFRNEQGLEAVGDNKYS--ATKSSGTAYNAD----GMNKIKEKSLERSNV 545

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +    L+ L+  +++Y  S+K I  +D  L+T ++ +K
Sbjct: 546 SYSSTLTSLMVYQRAYEASSKSITTSDDFLKTAIDMIK 583


>gi|167038474|ref|YP_001666052.1| flagellar basal body rod protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116869|ref|YP_004187028.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166857308|gb|ABY95716.1| flagellar basal body rod protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929960|gb|ADV80645.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 251

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 65/252 (25%), Gaps = 28/252 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           +L     A +     ++    +  N+ N +   Y R   +T+                  
Sbjct: 1   MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSPFPNFEVTRHGGDNTPPN 60

Query: 45  ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V V T    + N  +      +  +        F  +          + S 
Sbjct: 61  GKIGTMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSF 117

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           T        + E Y        +  +  D + + + N   + + V ++R       +   
Sbjct: 118 TLSKDGYLVTQEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                        N  +   T             + + + ++    IS +    ++  V 
Sbjct: 178 KEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234

Query: 221 TSDGTTLFETVP 232
            +   TL + V 
Sbjct: 235 IAFDETLGKAVN 246



 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + +     VN  +E+  +I V ++Y  + K+++  D+ L   + 
Sbjct: 199 GKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246


>gi|168699693|ref|ZP_02731970.1| flagellar basal body rod protein FlgG [Gemmata obscuriglobus UQM
           2246]
          Length = 263

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 2/136 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            S+   +    ++  + +       G   + N    + +       +        L    
Sbjct: 130 TSDGFLISPQVTIPTQAVSVSVGSDGTISVQNAGALNASTVLGQLTLVRFQNPAGLSAEG 189

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           RN     E   S +  +    Q       + +     V++  EL  LI  +++Y  + + 
Sbjct: 190 RNLFA--ETASSGTPLIATPGQNGVGFTRQGFLERSNVDVVTELINLILAQRAYEFNTRA 247

Query: 465 IMFTDKMLQTLLEGVK 480
           +   D ML +  + ++
Sbjct: 248 VRTADNMLASTTDLIR 263



 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/162 (7%), Positives = 33/162 (20%), Gaps = 27/162 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     +    N  +    +   NI N +   + +                        
Sbjct: 1   MIKALFTSATGMNVQTTAIDNTSNNIANVNTNGFKKGQADFQDLLYVSQRAPGSDAAAGL 60

Query: 46  -SPENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + +        K      L    +        + F  +               
Sbjct: 61  QVPTGLQIGSGARVAGITKVFTPGALVNTQNPFDVAVEGEGFFQV------TLPSGELRY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                LR + +         ++   V    + V  +  +   
Sbjct: 115 TRDGALRLNAQGNLVTSDGFLISPQVTIPTQAVSVSVGSDGT 156


>gi|167750705|ref|ZP_02422832.1| hypothetical protein EUBSIR_01683 [Eubacterium siraeum DSM 15702]
 gi|167656384|gb|EDS00514.1| hypothetical protein EUBSIR_01683 [Eubacterium siraeum DSM 15702]
 gi|291532044|emb|CBK97629.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3]
 gi|291558218|emb|CBL35335.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a]
          Length = 242

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 21/117 (17%), Gaps = 6/117 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT----QRSE 58
           +   F   +       +       NI N +   +             V   T    Q   
Sbjct: 1   MNIAFYTGKTGLIAQQEGLNVYSNNIANVNTVGFKASRPSFADCIYTVQRNTEPDWQTGH 60

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFE-ALKEMMSADDHYNNSP-THYISKLRDSLES 113
            + +    L               F    +E   A                + S   
Sbjct: 61  GEYVHSTQLMYSEGVFTYTDNDLDFAIPTEEGFFAVMDKYGDVNYTRAGDFQMSQIG 117



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                  ++  ++  +I+ ++SY +S +++   D+ L+ +   ++
Sbjct: 198 ALERSNTDIAGDMVRIIETQRSYQMSARVVQTADE-LERITNNLR 241


>gi|15595120|ref|NP_212909.1| flagellar hook-basal body complex protein (flhO) [Borrelia
           burgdorferi B31]
 gi|2688723|gb|AAC67131.1| flagellar hook-basal body complex protein (flhO) [Borrelia
           burgdorferi B31]
          Length = 300

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 230 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 287

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 288 SLLGKLIN 295



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/147 (7%), Positives = 25/147 (17%), Gaps = 34/147 (23%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM---------- 42
               A +      ++  ++  N+ N D   Y +             R             
Sbjct: 22  GIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKFPKG 81

Query: 43  -TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
               +P    + T               L    + +             +        + 
Sbjct: 82  HLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQTSDG 134

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGK 125
                        E      S   +  
Sbjct: 135 ERYTRNGSFTIGKEGILVTKSGFPVLG 161


>gi|289607949|emb|CBI60684.1| unnamed protein product [Sordaria macrospora]
          Length = 240

 Score = 60.4 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 48/227 (21%), Gaps = 34/227 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPENV 50
           +        +  N  S+    +  N+ N +   +                   +++ +  
Sbjct: 1   MFGAIYIGLSGLNAYSKGLQQVSNNVSNLNTTGFKGSTVSFHNLYATPDRGGMSLTGQGG 60

Query: 51  TVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           +       +    N     L +    +        F  L +        + +        
Sbjct: 61  SAGYGVEVDDGTLNFKQGELRSTDRDLDLSVDGSGFLVLLD-------GDRTLYARTGSF 113

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
                    + +  I+          +       +  V   R  A K             
Sbjct: 114 E-------VDPAGFIVMSGTSYRLATLDATGRAVSLSVDARRTSAPKATTAVTFADNLSS 166

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
           +  +     I+   AS        D  +      S+   ++      
Sbjct: 167 TATSYAVSDIRVFDASGAAHVWKADFVNG-----SDGWTVTVTDDKG 208


>gi|225551767|ref|ZP_03772710.1| flagellar hook-basal body complex protein [Borrelia sp. SV1]
 gi|225371562|gb|EEH00989.1| flagellar hook-basal body complex protein [Borrelia sp. SV1]
          Length = 282

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDV--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/211 (5%), Positives = 34/211 (16%), Gaps = 40/211 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +      ++  ++  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEILIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L    + +             +    
Sbjct: 61  PKGHLETAPVVGKLGTGVEENEI---YTVFEQGPLKTTGNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
               +              E      S   +         +      T   ++       
Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLGEKGYIYLKKNNFKITPQGQIFHNSNFE 170

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
                L       + +   +    I      
Sbjct: 171 SDPKRLVSEYENSWENYELLDTIRIVNFENP 201


>gi|150020363|ref|YP_001305717.1| hypothetical protein Tmel_0465 [Thermosipho melanesiensis BI429]
 gi|149792884|gb|ABR30332.1| protein of unknown function DUF1078 domain protein [Thermosipho
           melanesiensis BI429]
          Length = 233

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 15/138 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPE--N 49
           +      A         +  ++  NI N D   Y                     P+   
Sbjct: 1   MYRGIYLASMGMLADITKLDTLSNNISNVDTAGYKSDSLAFKAYFEKQLYSFNPMPQKEE 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSA--IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           V V    S  + +    +  + S   +        F    +     ++            
Sbjct: 61  VEVKKIGSFEQALILDQVKTNYSQGTLEYTGHSLDFAIDGKGFFVVENAGKRMYTRAGNF 120

Query: 108 RDSLESYSKNLSEDILGK 125
           + + E Y        +  
Sbjct: 121 KANEEGYLITPEGYYVLG 138



 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           I + Y     VN+  E+  +I+  + Y   +K +   D++L   +  
Sbjct: 182 ILQGYVEKSNVNIVREMVKMIEATRHYETLSKAVTVHDELLNKSINS 228


>gi|238923133|ref|YP_002936646.1| flagellar basal body and hook protein [Eubacterium rectale ATCC
           33656]
 gi|238874805|gb|ACR74512.1| flagellar basal body and hook protein [Eubacterium rectale ATCC
           33656]
          Length = 272

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 70/252 (27%), Gaps = 6/252 (2%)

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +       +      +    +    + +   S     K         + V    +   +
Sbjct: 23  ANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDAKPVGAQVGLGTRVAATTSTYTQ 82

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
                    ++          V G                       +    + NP    
Sbjct: 83  GPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGNGQTILTDSQGNPVMDT 142

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD---PVAGINTNVTLLEYARNSIG 409
           +G  ++     + + ++   D    Y  +       +    V   N    L + + + + 
Sbjct: 143 NGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQFNNPSGLEKQSGSLLA 202

Query: 410 WLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                 S +  L + +  + +  +   Y     V + +E+  LI  +++Y +++K I   
Sbjct: 203 --ATANSGNPMLEIANPALKSSKVVTGYLEGSNVQVADEMVNLIVAQRAYELNSKAITTA 260

Query: 469 DKMLQTLLEGVK 480
           D ML+T     +
Sbjct: 261 DSMLETANNLRR 272



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 51/217 (23%), Gaps = 26/217 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPEN-- 49
           ++     A            +I  N+ N +   +  + T             + S     
Sbjct: 1   MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                         +         L++             F A++   +   +  N    
Sbjct: 61  KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120

Query: 103 ------YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                   + L DS  +   + + +I+      +AE++    + +   +       +   
Sbjct: 121 WSQYGNGQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQ 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
            + +                +     S +   +  + 
Sbjct: 181 RIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEIANP 217


>gi|283780137|ref|YP_003370892.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068]
 gi|283438590|gb|ADB17032.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068]
          Length = 266

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 2/136 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            +    L D      +    +   A    L+  +     +      +A       LL+  
Sbjct: 133 SAQTGRLIDPNVSFPQDTMAISITADGRVLVRQFGQQDLQQIAQIQLATFPNPEGLLKLG 192

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N       + S    +          + +       V   +EL  LI  ++S+ ++++ 
Sbjct: 193 ENLYSQ--TDASGQEIVDNPGNQGIGVLRQGMLEASNVEPVQELIDLITTQRSFELNSQA 250

Query: 465 IMFTDKMLQTLLEGVK 480
           I   D++LQ +    +
Sbjct: 251 IQAGDQILQLISNLRR 266



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/184 (7%), Positives = 38/184 (20%), Gaps = 28/184 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------- 44
           MS+      A     +   +   I  N+ N +   + R                      
Sbjct: 1   MSV-QTLYTAATGMESLQTKLDVIANNLANVNTTGFKRGRANFEDLFYRQEKLPGSQDQQ 59

Query: 45  -----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                            S   N            +      Q F  +++          +
Sbjct: 60  QNLTATGTAIGLGSRVSSVQTNFNQGAFQETGGQLDVAIEGQGFLRVQD------PSGIT 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                  L  + +      S         + +        +   + + +     ++   +
Sbjct: 114 VYSRAGNLSINAQGQLVMGSAQTGRLIDPNVSFPQDTMAISITADGRVLVRQFGQQDLQQ 173

Query: 160 ISNL 163
           I+ +
Sbjct: 174 IAQI 177


>gi|149912830|ref|ZP_01901364.1| flagellar basal-body rod protein FlgC [Roseobacter sp. AzwK-3b]
 gi|149813236|gb|EDM73062.1| flagellar basal-body rod protein FlgC [Roseobacter sp. AzwK-3b]
          Length = 130

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV 53
          MS  +   + + +     +Q+   +  NI NAD   Y R+          ++ V
Sbjct: 1  MSGFSESLSVSASGLKAQAQRLRHVSENIANADTPGYRRKTVSFEARAAGMSGV 54


>gi|294501850|ref|YP_003565550.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium
           QM B1551]
 gi|294351787|gb|ADE72116.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium
           QM B1551]
          Length = 273

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 68/276 (24%), Gaps = 7/276 (2%)

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             I+               G  L  T          +   +  +      D         
Sbjct: 4   TMITAANTMGQLQQQLDVIGHNLSNTNTPGYKARDASFNDMLYQQVNNQEDKGTEKRLTP 63

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           + + +G    L Q   ++        D++  V   + +    +A N    P  +  DG  
Sbjct: 64  AGIRQGTGAYLDQTSLNMTQGAFQNTDKLLDVAASNPNVYFQVAVNDSQQPVQYTRDGSF 123

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            L  +    +                     +  K    +                +   
Sbjct: 124 HLSPEGPNDVKLVNGSGQDVLGENGQAIIFNNAFKDIQIDGSGTITVTTNTGVDQFTLGL 183

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
             +  P         L  +                            + +       V+L
Sbjct: 184 TNVQKPQVLEAKGENLFAFPAGMNQPNMFTDLTGKARETAG------VEQGKLEQSNVDL 237

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +EL+ +   +++Y  +++ I   D+M+  L+ G++
Sbjct: 238 SKELTDMSIAQRAYQFNSRSISIADQMMG-LVNGIR 272



 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 51/200 (25%), Gaps = 20/200 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A N      QQ   I  N+ N +   Y  RD                      
Sbjct: 1   MNRTMITAANTMGQLQQQLDVIGHNLSNTNTPGYKARDASFNDM---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED- 121
              +    ++   +    +   A     +       S        +++ +      S   
Sbjct: 45  ---LYQQVNNQEDKGTEKRLTPAGIRQGTGAYLDQTSLNMTQGAFQNTDKLLDVAASNPN 101

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +  +  ++++++ VQ     +  +     +  K +     ++     +  + N+A K   
Sbjct: 102 VYFQVAVNDSQQPVQYTRDGSFHLSPEGPNDVKLVNGSGQDVLGENGQAIIFNNAFKDIQ 161

Query: 182 ASKHDAHDFLDQRDVLLQKI 201
                         V    +
Sbjct: 162 IDGSGTITVTTNTGVDQFTL 181


>gi|322432975|ref|YP_004210224.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9]
 gi|321165202|gb|ADW70906.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9]
          Length = 263

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/251 (9%), Positives = 67/251 (26%), Gaps = 7/251 (2%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
               + +N + + +    S +       +  S             A  Q  ++       
Sbjct: 11  GMTAQQLNLDNIANNLANSSTTGFQQRRLAFSDMLYQNTTSPGSAATQQTTNAAGLQVGL 70

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG---ISETICVNPQYR 345
            +   +   I +  + +      +          +   + +                   
Sbjct: 71  GVRPTSTETIQTQGDFNSTGNPLDLAISGGGFFQVLLPNGQTGYSRSGSFHMDSTGNVVT 130

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           ++ + L+   ++            G   ++       +       +A       L     
Sbjct: 131 ADGNPLQPAITIPPDATNITIGSDGTVSVVQPGTT-QSAQIGSIQMALFVNPGGLNSVGN 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQV-VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           N   +L    S    +           I +       V++ +E   +I  ++SY  ++++
Sbjct: 190 NI--YLATTASGDPIIGTPGGSEGLGTIQQGTLEASNVSVVDEFVEMIVAQRSYESNSRV 247

Query: 465 IMFTDKMLQTL 475
           +   D+M+Q L
Sbjct: 248 VKAADEMMQQL 258



 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/187 (6%), Positives = 41/187 (21%), Gaps = 19/187 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +          +I  N+ N+    + +R    +                  
Sbjct: 1   MIRALYTAASGMTAQQLNLDNIANNLANSSTTGFQQRRLAFSDM---------------- 44

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +    +S         +  A  ++       +            +       +S   
Sbjct: 45  ---LYQNTTSPGSAATQQTTNAAGLQVGLGVRPTSTETIQTQGDFNSTGNPLDLAISGGG 101

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             + ++ N +       +   +       AD         +    + +T+ +D       
Sbjct: 102 FFQVLLPNGQTGYSRSGSFHMDSTGNVVTADGNPLQPAITIPPDATNITIGSDGTVSVVQ 161

Query: 183 SKHDAHD 189
                  
Sbjct: 162 PGTTQSA 168


>gi|160878402|ref|YP_001557370.1| hypothetical protein Cphy_0244 [Clostridium phytofermentans ISDg]
 gi|160427068|gb|ABX40631.1| protein of unknown function DUF1078 domain protein [Clostridium
           phytofermentans ISDg]
          Length = 271

 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 8/195 (4%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
              +  +   +    +A +   +  +  +DG           I+          ++   +
Sbjct: 79  SFTQGTLQESNNDWDLAISGNGLFSVRDSDGNTAYTRNGSFHIAIGAEGVTLASADGYPV 138

Query: 352 RDGGSVSKKFLWN-----VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
            +       F  N     V        +     +   +  I   +        L +   +
Sbjct: 139 LNTKGQPVVFNNNWDISKVTMDEYGNLMYPDANNIAQRTGIQIGLTQFVNPAGLEKAGGS 198

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
              + E   S +    +++  +    I   Y     V   +E+  LI  +++Y +++K+I
Sbjct: 199 L--FYETESSGAPLKEVENNNLKQSKIHTGYLEASNVQTADEIVNLIVTQRAYEMNSKVI 256

Query: 466 MFTDKMLQTLLEGVK 480
              D+MLQ      +
Sbjct: 257 TAADEMLQQANNLRR 271



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/117 (5%), Positives = 27/117 (23%), Gaps = 20/117 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++       +   +      +I  N+ N +   Y + +   +                  
Sbjct: 1   MMRALWTGASGMISQQTSLDTISNNLSNINTAGYKKENAQFSSLLYSKIQSKVTDSEGKV 60

Query: 47  ----PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                +  + V       +     L   ++            ++++      +  N 
Sbjct: 61  KPVIGQVGSGVRVTGIVSSFTQGTLQESNNDWDLAISGNGLFSVRDSDGNTAYTRNG 117


>gi|325473455|gb|EGC76650.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402]
          Length = 270

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/168 (9%), Positives = 32/168 (19%), Gaps = 40/168 (23%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45
             A +      +Q   I  N+ N D  ++ R  ++                         
Sbjct: 6   YTAASGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKNPFGSS 65

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V                L   SS        Q F A++          
Sbjct: 66  DIAPIIGKLGLGVETNEI---FTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEK---- 118

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
                        +E Y        +         + ++       ++
Sbjct: 119 ---YTRNGNFMVGVEGYLMTKEGYPVMGENGRIFLQDMEYKINQDGQI 163



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + + +     VN+  E+  +I+V ++Y  + K I   D M+  L  
Sbjct: 220 VVQGFIEASNVNVVNEMVRMIEVNRAYEANQKSIQAEDTMMAKLWN 265


>gi|42526517|ref|NP_971615.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC
           35405]
 gi|41816710|gb|AAS11496.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC
           35405]
          Length = 270

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/168 (9%), Positives = 32/168 (19%), Gaps = 40/168 (23%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45
             A +      +Q   I  N+ N D  ++ R  ++                         
Sbjct: 6   YTAASGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKNPFGSS 65

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V                L   SS        Q F A++          
Sbjct: 66  DIAPIIGKLGLGVETNEI---FTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEK---- 118

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
                        +E Y        +         + ++       ++
Sbjct: 119 ---YTRNGNFMIGVEGYLMTKEGYPVMGENGRIFLQDMEYKINQDGQI 163



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + + +     VN+  E+  +I+V ++Y  + K I   D M+  L  
Sbjct: 220 VVQGFIEASNVNVVNEMVRMIEVNRAYEANQKSIQAEDTMMAKLWN 265


>gi|170747256|ref|YP_001753516.1| flagellar basal-body rod protein FlgG [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653778|gb|ACB22833.1| flagellar basal-body rod protein FlgG [Methylobacterium
           radiotolerans JCM 2831]
          Length = 263

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 2/172 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F    + D      +  S  +    Q  +   +L D      +   +V   
Sbjct: 93  YDVAIRGDGFFRVTLPDGRTAYSRDGSFDLSAQGQLVTRDGYLLDPAITVPQNATSVTIS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           A      N    +  +      ++     V L     N   ++E   S      +     
Sbjct: 153 ATGAVQANIPGQTAPQALGQFQLSRFVNKVGLESIGDNL--FVETAASGQAISGLPGADG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F ++ +SY     VN   E+S LI  +++Y +++K++   D+ML T  +  +
Sbjct: 211 FGNLQQSYLEEANVNAVTEISSLIAAQRAYEMNSKVVTAADQMLSTTTQMFR 262



 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/175 (8%), Positives = 25/175 (14%), Gaps = 34/175 (19%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44
               A             I  NI N     Y R+                          
Sbjct: 3   ALYSAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNMRRAGASTSQQNTQL 62

Query: 45  ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +       M    L +             F  +            + 
Sbjct: 63  PAGLSLGSGVKTTSTARV---MSQGTLSSTEKDYDVAIRGDGFFRV------TLPDGRTA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                    S +         +L   +           + +      I      +
Sbjct: 114 YSRDGSFDLSAQGQLVTRDGYLLDPAITVPQNATSVTISATGAVQANIPGQTAPQ 168


>gi|224532206|ref|ZP_03672838.1| flagellar hook-basal body complex protein [Borrelia valaisiana
           VS116]
 gi|224511671|gb|EEF82077.1| flagellar hook-basal body complex protein [Borrelia valaisiana
           VS116]
          Length = 282

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEMDI--SLRPKIETETLEASNVNPVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 NLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/153 (5%), Positives = 24/153 (15%), Gaps = 40/153 (26%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT----------------- 41
           ++     A +      ++   +  N+ N D   Y +    +                   
Sbjct: 1   MVRGIYTAASGMMAERRKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 42  ---------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V                L    + +             +    
Sbjct: 61  PKGHLETAPIVGKLGTGVEENEI---YTLFEQGPLKTTGNPLDLALT-------DQGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               +              E      S   +  
Sbjct: 111 IQTSDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|189426331|ref|YP_001953508.1| flagellar basal body rod protein [Geobacter lovleyi SZ]
 gi|189422590|gb|ACD96988.1| flagellar basal body rod protein [Geobacter lovleyi SZ]
          Length = 258

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/165 (9%), Positives = 36/165 (21%), Gaps = 6/165 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSEN 59
           + +    A +    A ++   I  N+ NA    + +                 V      
Sbjct: 1   MNSGMYSALSGNLAAMKRLDVISSNLANASTNGFKQDRLAFESVLAGNRNPPAVPPSQTA 60

Query: 60  KNMFDKVLHAHSSAIG---QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +  +       + G   Q           +                   R + +    
Sbjct: 61  DPVLLQERMLTDYSAGTLVQTGNTLDVALQGDGFFVVRTPEGVAYTRQGNFRLASDGTLI 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                 +     +  E+        A +    R   D +  + I+
Sbjct: 121 TADGYQVLSKAGERPEDGQPIRIDVAGQDGGGRPVVDSQGGITIN 165


>gi|256751339|ref|ZP_05492218.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749721|gb|EEU62746.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 266

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 2/158 (1%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               D       +    +       P     G  +         +++    +     D  
Sbjct: 111 YYTRDGSFKLSPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGT 170

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        LL    N   +     S         +     + + +  T  +
Sbjct: 171 TQEVATLGIYNFVNTQGLLSVGSNL--YEPTEASGQPGTRDDFEGRMGKVMQGFLETSNI 228

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +E+  +I  +++Y I++K I   D+ML       +
Sbjct: 229 QIVKEMVDMIAAQRAYEINSKAIQAADEMLGIANNLRR 266



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 55/236 (23%), Gaps = 6/236 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           ++     A +           I  N+ N +   + R                NV     +
Sbjct: 1   MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             N  +   V  +          LQ  +   ++    + +                S+  
Sbjct: 61  PVNMQVGVGVRLSAIVKDFTGGSLQQTDNPLDLALDGEGFFAVLGPDGKVYYTRDGSFKL 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + + + L     D    +  + N    +  +          + + N      E+  +   
Sbjct: 121 SPNGNNLMLVTADGYPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIY 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
               T         L +      +          +       + TS+   + E V 
Sbjct: 181 NFVNTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEMVD 236


>gi|239828562|ref|YP_002951186.1| hypothetical protein GWCH70_3280 [Geobacillus sp. WCH70]
 gi|239808855|gb|ACS25920.1| protein of unknown function DUF1078 domain protein [Geobacillus sp.
           WCH70]
          Length = 283

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 77/246 (31%), Gaps = 9/246 (3%)

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIK-ALLQIRDSVVPIFQNQLDEMA 294
              +  +     ++  +  +GV        A     +    L   D  + +   +  +  
Sbjct: 44  LLAQQFTNLPNDKATRLTPNGVRYGVGARLAETNLVLAQGALTKTDRALDVALAKEGQFF 103

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
           RVL+   +    I         L  +    +    +       +  N      P   ++ 
Sbjct: 104 RVLVQGENGAQEIGYTRSGAFYLTPSAENPNELMLVTSDGHPVLDENNAPILLPEGFKNI 163

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
              +   +  V +        N    +  +  +   V      +  L     +   +  N
Sbjct: 164 TISNNGTITAVASDGRVMRRANIGITTILRPQLLQSVGDNIFTLPDLNALNVNETDVAVN 223

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            + +    +        +++       V+L  EL+ ++  E+SY ++ + I  +D+ML  
Sbjct: 224 MTGNLRNQI-------SMTQGALEQSNVDLGAELTDMMITERSYQLNARAISLSDQMLG- 275

Query: 475 LLEGVK 480
           L+ G++
Sbjct: 276 LINGIR 281



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A N      QQ   I  NI N++   + RR+T     
Sbjct: 1  MLRSMITAANTMAQLGQQLDVISNNIANSNTTGFKRRETNFGEL 44


>gi|302343296|ref|YP_003807825.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075]
 gi|301639909|gb|ADK85231.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075]
          Length = 239

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 2/186 (1%)

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
              L          A +       +      D +    +  + ++  + Q       L  
Sbjct: 55  QTALASGPIVSTGNALDLAIDGAGYFVLQDADGNELYTRAGNFSLNADGQLVDQTGRLVQ 114

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                         +     +     D          +A       L     N   +   
Sbjct: 115 AEGFQAPQGTAQIQVGADGVVQALGADDAVLAEGQLQIATFANPGGLRAVGGN--AFQAT 172

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + S    +    Q  +  I+     T G ++  E+   I  ++S+  + K I   D+ML 
Sbjct: 173 DASGPAVIDAAGQPGYGAIASGALQTSGTDIVSEMVGQITAQRSFEANLKTIRTGDEMLG 232

Query: 474 TLLEGV 479
           T+L+ V
Sbjct: 233 TILDIV 238



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 11/150 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61
           ++       +  N A ++      N+ N     YV         +   V VV Q +    
Sbjct: 2   IIDGIAAGISGMNAAVRRLNQSANNLANISTPGYVPSRVEQADLAGGGVAVVGQTA---- 57

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +    + +  +A+        +  L++         N           + +    + +  
Sbjct: 58  LASGPIVSTGNALDLAIDGAGYFVLQDA------DGNELYTRAGNFSLNADGQLVDQTGR 111

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
           ++        +   Q    +   VQ + AD
Sbjct: 112 LVQAEGFQAPQGTAQIQVGADGVVQALGAD 141


>gi|149203129|ref|ZP_01880100.1| flagellar basal-body rod protein FlgC [Roseovarius sp. TM1035]
 gi|149143675|gb|EDM31711.1| flagellar basal-body rod protein FlgC [Roseovarius sp. TM1035]
          Length = 130

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS  +   + + +     +Q+   +  NI NAD   Y R+      +          + +
Sbjct: 1  MSDFSNALSVSASGLKAQAQRLQHVSENIANADTPGYRRKTVSFEATHAGTGTAGAVTVS 60

Query: 60 KNMFDKV 66
          +   D+ 
Sbjct: 61 RVHLDQS 67


>gi|255767784|ref|NP_391520.2| flagellar hook-basal body protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|254763418|sp|P39753|FLHP_BACSU RecName: Full=Flagellar hook-basal body complex protein flhP
 gi|225185412|emb|CAB15656.2| putative flagellar hook-basal body protein [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 269

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +           N   + D    +     ++KN+    +      D         
Sbjct: 123 YVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNL 182

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            V  +N    L     N       + + + +    +      + +       V++ E+++
Sbjct: 183 GVVQVNNPQELKSEGNNLFS---IDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 239

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  ++SY ++++ I   D+ML  L+  V+
Sbjct: 240 DLITSQRSYQLNSRTITMGDQMLG-LINSVR 269



 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A    N   QQ  +I  N+ N++   Y  +DT  +  
Sbjct: 1  MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44


>gi|221311596|ref|ZP_03593443.1| flagellar hook-basal body protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315923|ref|ZP_03597728.1| flagellar hook-basal body protein [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320836|ref|ZP_03602130.1| flagellar hook-basal body protein [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|1763701|emb|CAB05941.1| flhP [Bacillus subtilis subsp. subtilis str. 168]
          Length = 268

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +           N   + D    +     ++KN+    +      D         
Sbjct: 122 YVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNL 181

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            V  +N    L     N       + + + +    +      + +       V++ E+++
Sbjct: 182 GVVQVNNPQELKSEGNNLFS---IDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 238

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  ++SY ++++ I   D+ML  L+  V+
Sbjct: 239 DLITSQRSYQLNSRTITMGDQMLG-LINSVR 268



 Score = 40.8 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A    N   QQ  +I  N+ N++   Y  +DT  +  
Sbjct: 1  MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44


>gi|254461663|ref|ZP_05075079.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium
           HTCC2083]
 gi|206678252|gb|EDZ42739.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 262

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 50/166 (30%), Gaps = 2/166 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            + +       F    I D      +  S +        +   ++          +  V 
Sbjct: 92  NSFDLAIDGQGFFQVLIPDGRVGYTRNGSFSRSAEGALTTASGYVVQPEIRIPDDVVEVN 151

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +        +      +A       L     + +  ++   S    +     
Sbjct: 152 VSQDGIVSVRSAAQKEPQEVGQLTLASFANPRGLQPVGESFL--VQTAASGDPTVASPQA 209

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                + +    +  VN+ ++L  +I+ +++Y +S+K I  +D+M+
Sbjct: 210 QGIGKLVQGSLESSNVNVVQQLVEMIETQRAYEVSSKSITASDEMM 255



 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 28/145 (19%), Gaps = 28/145 (19%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--------- 51
           MS     + A+   N    +   I  N+ N +   +             V          
Sbjct: 1   MS-SNAMHVAKTGLNAQQTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVKRGGGDQTSE 59

Query: 52  ----------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                         R+ N         +    ++       Q F  +             
Sbjct: 60  GTELTSALALGTGVRAVNTQKLYSQGGMVNTDNSFDLAIDGQGFFQVL------IPDGRV 113

Query: 100 PTHYISKLRDSLESYSKNLSEDILG 124
                     S E      S  ++ 
Sbjct: 114 GYTRNGSFSRSAEGALTTASGYVVQ 138


>gi|109947808|ref|YP_665036.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba]
 gi|109715029|emb|CAK00037.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba]
          Length = 605

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 63/246 (25%), Gaps = 26/246 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            + Y        +    +   ++   N      ++QK+  +    +++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIQKLHGNTLSPLQI 179

Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 +  LS    ++  +  K   K      L+ +  ++++      I+ +  ++N+ 
Sbjct: 180 PQDLTYQPVLSTKVDISVNLNPKDHLKGAQEFLLNDKGEIIKERFLNQDINALANDDNEP 239

Query: 218 VVYTSD 223
           +   ++
Sbjct: 240 IDAITN 245



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 15/232 (6%)

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
             S++  S+    +     +++  +V     +        I      D      ++ P  
Sbjct: 380 TNSNDPTSSPTSKRKNQTWEVKSYIVDP---KNKTPINEPIWEIIGFDSATHKMKSAPMT 436

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
               G +          SE    +     +   L    +   + ++    +     +   
Sbjct: 437 LDFKGNRL---TYSLNKSENHDSSDLIYQDSKLLEVSQNGKPRGIFRDMRIEENGVISLA 493

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428
           + +   +      +     +  L +   N     E   +  +             + ++ 
Sbjct: 494 FSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLK 553

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F  I   Y  T  VN    L+ LI +++ Y+++ K     D M++  +   K
Sbjct: 554 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNAKAFGAGDDMIKEAISLKK 605


>gi|197120124|ref|YP_002140551.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem]
 gi|197089484|gb|ACH40755.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem]
          Length = 238

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 45/190 (23%), Gaps = 4/190 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +   +A ++   I  N+ N++   +            NV   TQ++     
Sbjct: 1   MNSGIYAALSGNLSAQRRLDVISNNLANSNTSGFKADQIQFESVLANVKNPTQQAPV--F 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +       S    QR   + +     +     +               S      N   
Sbjct: 59  SNDRYSTDYSPGAMQRTENALDVALDGDGFFVVNTPQGPAYTRQGNFFRSQAGRLVNADG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +  +    A    +       EV    A      +++     +       +      +
Sbjct: 119 FEVQGSGGSIAIGGGKVEIAGNGEVVVNGATVGTLSKVDFPKPYQLTKIGGGLFVPANPQ 178

Query: 181 TASKHDAHDF 190
            A        
Sbjct: 179 AAPAPTQASV 188


>gi|299131785|ref|ZP_07024980.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2]
 gi|298591922|gb|EFI52122.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2]
          Length = 262

 Score = 60.0 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 47/163 (28%), Gaps = 2/163 (1%)

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
           +    + D      +  S T     +  +    L        +    +   A     +  
Sbjct: 102 YFKIQLPDSTYAYTRDGSFTTDGQGRIVNAQGNLVQPTISIPQNASQLTINAQGQVSVIL 161

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
              +         +        L     N         S      + +   F  I +   
Sbjct: 162 PGSTTPSVLGQITLTRFINKAGLQSIGDNLFTD--TPASGPPQDGLANADGFGDIQQGNL 219

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               V +  E+S LI  +++Y ++ K++   D+M+Q+    ++
Sbjct: 220 EQANVEVVSEISDLIAAQRAYEMNAKVVSAADQMMQSTTGMLR 262



 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 8/41 (19%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A             I  NI N     Y ++       
Sbjct: 3  ALYTAATGMAAQELSVQVISNNIANLRTTGYKKQMASFQDL 43


>gi|158321570|ref|YP_001514077.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs]
 gi|158141769|gb|ABW20081.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs]
          Length = 357

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 35/138 (25%), Gaps = 4/138 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      +       N+ N +   + +   +    PE    V  +  N  +
Sbjct: 1   MFRGLYTAVSSMQTNQRMLDITSNNMANVNTTGFKKDVLVAETFPE----VLIKKINGEI 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ +  + +    +       + +      +           K     + Y +      
Sbjct: 57  PNQTIKLNGNLDIDRDGEGYILSTERGFFTVEGPMGKSYSRDLKFTVDEDGYLRTYGRTS 116

Query: 123 LGKTVIDNAEEVVQNFNT 140
            G+        V+    T
Sbjct: 117 GGEIDWTEGNFVLSGQGT 134



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 92/356 (25%), Gaps = 12/356 (3%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
            +  A   +Q             A+ +     +   +     E+ +     +    +   
Sbjct: 4   GLYTAVSSMQTNQRMLDITSNNMANVNTTGFKKDVLVAETFPEVLIKKINGEIPNQTIKL 63

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
             +    RD     +S   G  T+              T   +   R            T
Sbjct: 64  NGNLDIDRDGEGYILSTERGFFTVEGPMGKSYSRDLKFTVDEDGYLRTYGRTSGGEIDWT 123

Query: 247 SESNPIFIDGVVVSSNQGSAVPK--GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
             +  +   G  +  +  +      G+I A     D +    Q+ +  +        +  
Sbjct: 124 EGNFVLSGQGTRIRVDNNNVQIDQRGRITAGGGAMDLIHRPAQDVIGTINGGKRFERTHV 183

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           + + G  E                ++          N  +   P+              N
Sbjct: 184 NFLQGTLEETGSPLNFAIDGTGFFRVQTPEGPMYTRNGSFSLGPNGNLVTAEGYLLLGQN 243

Query: 365 VKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                G  +     N       +      +  I+   +L ++ ++        R      
Sbjct: 244 GPINVGNQEFQVKENGQVIVAGQLVNQISMTDISNLNSLDKFGQSYY----IVREGLEVE 299

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                     + + +     ++  +E+  +I   +SY  S+K++   D+MLQ  + 
Sbjct: 300 ETPFT---GEVLQGFLEGSNISTIDEMVKMISTMRSYEASSKMVKAYDEMLQKAVN 352


>gi|309788146|ref|ZP_07682752.1| flagellar basal-body rod flgG domain protein [Shigella
          dysenteriae 1617]
 gi|308923998|gb|EFP69499.1| flagellar basal-body rod flgG domain protein [Shigella
          dysenteriae 1617]
          Length = 82

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +++    A+   +        I  N+ N     + R+  +    
Sbjct: 1  MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44


>gi|182680548|ref|YP_001834694.1| flagellar basal body rod protein FlgG [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636431|gb|ACB97205.1| flagellar basal-body rod protein FlgG [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 262

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 55/178 (30%), Gaps = 2/178 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           +           +       +      + +    +  + +     Q  +   +L +    
Sbjct: 82  VQGTLTNTGNKLDLALNGRGWFQVTSPEGETLYTRAGAFSTNATGQLVTTDGYLVNPNIT 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 +V         +     +  +      +        L     N   + +   S 
Sbjct: 142 IPTDATDVAVNQSGVVSVTRNGQTSAQQIGQLTLTNFANEAGLTPLGSNL--YRQTEASG 199

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +        + F  I++ Y  T  V+  +E++ LI  +++Y +++K+I   D+M  T+
Sbjct: 200 TPVSGTPGDIGFATINQGYLETSNVDPVKEITDLISAQRAYEMNSKVIQAADEMATTI 257



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/258 (7%), Positives = 44/258 (17%), Gaps = 23/258 (8%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------------- 51
             + A             I  NI N +   + R     T                     
Sbjct: 3   ALSIAATGMAAQDLNVQVIANNIANMNTTAFKRARAEFTDLLYQAERLQGVANRGQSNMI 62

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTH 102
                    V   +         L    + +      + +  +        +      + 
Sbjct: 63  PEGAQLGLGVRTAAIRNLHVQGTLTNTGNKLDLALNGRGWFQVTSPEGETLYTRAGAFST 122

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
             +    + + Y  N +  I          +      T   +    +             
Sbjct: 123 NATGQLVTTDGYLVNPNITIPTDATDVAVNQSGVVSVTRNGQTSAQQIGQLTLTNFANEA 182

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
               L               S           +    + S +  +  I    +    Y  
Sbjct: 183 GLTPLGSNLYRQTEASGTPVSGTPGDIGFATINQGYLETSNVDPVKEITDLISAQRAYEM 242

Query: 223 DGTTLFETVPRDINFEKM 240
           +   +           K 
Sbjct: 243 NSKVIQAADEMATTISKN 260


>gi|91791415|ref|YP_561066.1| protein of unknown function DUF1078-like protein [Shewanella
           denitrificans OS217]
 gi|91713417|gb|ABE53343.1| protein of unknown function DUF1078-like protein [Shewanella
           denitrificans OS217]
          Length = 253

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 11/138 (7%), Positives = 31/138 (22%), Gaps = 18/138 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A++  +   +Q  +I  NI N     Y           +     + +  +   
Sbjct: 1   MIDALYIAESGLDAKQKQLDAIAHNIANVSTPGYKTSQMSFMTVVQEDRDNSGQIVSSQG 60

Query: 63  F------------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                           +      +        F  +++                 +L   
Sbjct: 61  LGVMAQQSPLDMSVGKMEQTGRPLDVAINGAGFLEVEQ------GNGKLLYSRGGRLITD 114

Query: 111 LESYSKNLSEDILGKTVI 128
            + Y    +   L   + 
Sbjct: 115 AQGYLSTENGLRLTSMLQ 132



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 49/143 (34%), Gaps = 1/143 (0%)

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I     Y S  + LR    +          +A    L      +         +      
Sbjct: 112 ITDAQGYLSTENGLRLTSMLQIPPDAEDVRIATDGMLSAKLPGNEVIEIGQVQLVNFVDM 171

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
             +     N    +++   ++       +     + +    +  V++ +E+  ++  ++S
Sbjct: 172 SAIKAVGNNLF-EVDQEALNTAYYGSVGESGMGVLQQGMLESSNVSMNQEMMNMMMAQRS 230

Query: 458 YNISNKLIMFTDKMLQTLLEGVK 480
           Y ++ +L+  +D++L+TL    +
Sbjct: 231 YQLNARLVQVSDQILETLNNLRR 253


>gi|321313186|ref|YP_004205473.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5]
 gi|291486214|dbj|BAI87289.1| flagellar hook-basal body protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019460|gb|ADV94446.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5]
          Length = 269

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +           N   + D    +     ++KN+    +      D         
Sbjct: 123 YVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNL 182

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            V  +N    L     N       + + + +    +      + +       V++ E+++
Sbjct: 183 GVVQVNNPQELKSEGNNLFS---IDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 239

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  ++SY ++++ I   D+ML  L+  V+
Sbjct: 240 DLITSQRSYQLNSRTITMGDQMLG-LINSVR 269



 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A    N   QQ  +I  N+ N++   Y  +DT  +  
Sbjct: 1  MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44


>gi|114762164|ref|ZP_01441632.1| flagellar basal-body rod protein FlgG [Pelagibaca bermudensis
           HTCC2601]
 gi|114545188|gb|EAU48191.1| flagellar basal-body rod protein FlgG [Roseovarius sp. HTCC2601]
          Length = 261

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 8/221 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                 +      +   D  +     QL   AR    +          +     L I   
Sbjct: 41  ADLHYQQVARAGTVSAADGTMLPTGVQLGLGARPAAVTMKLAQGALSQTGGDLDLAIEGR 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                         T     +       +   G      +    +             ++
Sbjct: 101 GYFEVTLPSDLAGYTRDGALKRDGEGLIVTSDGLPVAPEIVIPDDATSLSINAEGEIYAY 160

Query: 383 NKNFI------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
             + +         + G      L     N     E   S         Q         Y
Sbjct: 161 FNDAVEAQLLGQLTLVGFTNPKGLEAIGGNLFT--ETEASGPPIQTTAGQDGLGTFRHGY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                V+   E++ LI+ ++ Y +++K+I   D+ML   ++
Sbjct: 219 LEDSSVDPVYEITELIEAQRGYELNSKVISAADQMLGATVQ 259



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/248 (7%), Positives = 50/248 (20%), Gaps = 30/248 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +   I  N+ N     Y  R                          
Sbjct: 3   ALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQVARAGTVSAADGTML 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V +            +    L      +      + +  +          + +    
Sbjct: 63  PTGVQLGLGARPAAVTMKLAQGALSQTGGDLDLAIEGRGYFEV------TLPSDLAGYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              L+   E          +   ++   +    + N             + ++  +++ +
Sbjct: 117 DGALKRDGEGLIVTSDGLPVAPEIVIPDDATSLSINAEGEIYAYFNDAVEAQLLGQLTLV 176

Query: 164 RRFLSE--LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
                +    +  +      AS         Q  +   +   +   S         ++  
Sbjct: 177 GFTNPKGLEAIGGNLFTETEASGPPIQTTAGQDGLGTFRHGYLEDSSVDPVYEITELIEA 236

Query: 222 SDGTTLFE 229
             G  L  
Sbjct: 237 QRGYELNS 244


>gi|89069822|ref|ZP_01157157.1| flagellar basal-body rod protein FlgC [Oceanicola granulosus
          HTCC2516]
 gi|89044623|gb|EAR50739.1| flagellar basal-body rod protein FlgC [Oceanicola granulosus
          HTCC2516]
          Length = 128

 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE---NVTVVTQR 56
          MS  +   +   +     S +   +  NI N+D   Y R+      +         V   
Sbjct: 1  MSDFSQALDVVASGLRAQSARLRHVSENIANSDTPGYRRKTVTFRDAFGATAGEVAVGPV 60

Query: 57 SENKNMFDK 65
            + +  ++
Sbjct: 61 RLDDSALER 69



 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 7/118 (5%)

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK-----NRSDSHDLH 422
            +G                  D        VT  +    + G +       + S    + 
Sbjct: 12  ASGLRAQSARLRHVSENIANSDTPGYRRKTVTFRDAFGATAGEVAVGPVRLDDSALERIF 71

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             +  + +     +     V+L  E++   + ++SY  + K+     +M  +LL+ ++
Sbjct: 72  DPAHPLAD--ESGHFEGSNVDLLIEIADAREAQRSYEANLKMFEQVRQMSTSLLDLLR 127


>gi|224532954|ref|ZP_03673563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           WI91-23]
 gi|224512118|gb|EEF82510.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           WI91-23]
          Length = 282

 Score = 59.7 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42
           ++     A +      ++  ++  N+ N D   Y +             R          
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 43  ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                  +P    + T               L    + +             +       
Sbjct: 61  PKGHLETAPIVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +              E      S   +  
Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|167585194|ref|ZP_02377582.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu]
          Length = 269

 Score = 59.7 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 53/264 (20%), Gaps = 10/264 (3%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----------SEN 59
             +  + AS     I  NI NA+   +            N    +            S  
Sbjct: 6   GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTRISSVQ 65

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
           ++     ++  ++A+        F  +          + +     +      +  +    
Sbjct: 66  QSFGQGTINTTNNALDVAINGNGFFQMSNNGVVTYSRDGTFQRDKNGFIVDSQGRNLMGY 125

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
               G  +   A   +Q    +       R      +  + +         T        
Sbjct: 126 NATAGGVINTAATVPLQAPTANLAPTATTRITGQFNLNSQDAVPATTPFSATDNTSYNYS 185

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            +   +D      Q D+   K +                                     
Sbjct: 186 TSIQVYDTLGGAQQVDMYFVKSATAGQWEVYSGVKGQTPTDLGSVKFNTSGQIASTTPLA 245

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQ 263
             + +       I   G   +   
Sbjct: 246 PVTGSTGQFKFTIPATGGSFTPQP 269


>gi|288958674|ref|YP_003449015.1| flagellar basal-body rod protein [Azospirillum sp. B510]
 gi|288910982|dbj|BAI72471.1| flagellar basal-body rod protein [Azospirillum sp. B510]
          Length = 240

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 40/152 (26%), Gaps = 6/152 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56
           +      A +      +Q      NI N +   Y  +  + T         E V+ V  R
Sbjct: 1   MENSIYVAMSRQMALQRQLDVTSNNIANMNTTGYKNQRMLFTEFLEKPGLHEKVSFVQDR 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +  +++ +  +    + +      Q +  +            +      +          
Sbjct: 61  AVVRDLSNGAMTQTGNPLDLALTGQGYFTVDTASGPRYTRAGNFRMNDQRQLVDAGGLPV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
             +           ++  V    T A E+  +
Sbjct: 121 LSNNGQPITLPAGTSDVKVSGDGTVATELGPV 152


>gi|225620642|ref|YP_002721900.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1]
 gi|225215462|gb|ACN84196.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1]
          Length = 282

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 17/258 (6%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T       E +      + +  + + S     ++  +           + +  +L +  
Sbjct: 37  DTVSFKAFPEMMAARTEDDGVVIFPLGSTDVRPYVGRMGTGVEVNEVFTEWEQGSLRETG 96

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           + +     ++         G    ++       +     +      +  +      +T  
Sbjct: 97  NQLDIALGDKGFFAIETPNGERYTRN--GSFLIDKDHYLVTKHGYKVMGENGYIQIKTNN 154

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            N       S  R     +    +N         L       F+                
Sbjct: 155 FNIDEEGRVSINRRYQDGNTFVQFNDNEWEDEEILDTLKIVRFDNERYLKKEGESF---- 210

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
                     W++ + S    +  K       +   +     VN   E+  +I+V+++Y 
Sbjct: 211 ----------WVDTDISGPAFIAEKGVN-RPKVLSRFLEMSNVNPINEMVRMIEVQRAYE 259

Query: 460 ISNKLIMFTDKMLQTLLE 477
           +++K I   D ++  ++ 
Sbjct: 260 LNSKTISTHDTLVGRVIN 277



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/185 (7%), Positives = 31/185 (16%), Gaps = 40/185 (21%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45
               +       +   +  N+ N D   + R                             
Sbjct: 6   YTGASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKAFPEMMAARTEDDGVVIFPLGST 65

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V              L    + +      + F A+       +  N
Sbjct: 66  DVRPYVGRMGTGVEVNEV---FTEWEQGSLRETGNQLDIALGDKGFFAI-------ETPN 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                         + Y        +         +           V   R   D    
Sbjct: 116 GERYTRNGSFLIDKDHYLVTKHGYKVMGENGYIQIKTNNFNIDEEGRVSINRRYQDGNTF 175

Query: 158 LEISN 162
           ++ ++
Sbjct: 176 VQFND 180


>gi|195941596|ref|ZP_03086978.1| flagellar hook-basal body complex protein (flhO) [Borrelia
           burgdorferi 80a]
 gi|216264480|ref|ZP_03436472.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           156a]
 gi|226320635|ref|ZP_03796194.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           29805]
 gi|215980953|gb|EEC21760.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           156a]
 gi|226233958|gb|EEH32680.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           29805]
 gi|312148084|gb|ADQ30743.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           JD1]
 gi|312149492|gb|ADQ29563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           N40]
          Length = 282

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42
           ++     A +      ++  ++  N+ N D   Y +             R          
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 43  ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                  +P    + T               L    + +             +       
Sbjct: 61  PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +              E      S   +  
Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|218249387|ref|YP_002375274.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           ZS7]
 gi|221217927|ref|ZP_03589394.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           72a]
 gi|224533400|ref|ZP_03673994.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           CA-11.2a]
 gi|225549985|ref|ZP_03770946.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           118a]
 gi|218164575|gb|ACK74636.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           ZS7]
 gi|221192233|gb|EEE18453.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           72a]
 gi|224513565|gb|EEF83922.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           CA-11.2a]
 gi|225369444|gb|EEG98896.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           118a]
          Length = 282

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42
           ++     A +      ++  ++  N+ N D   Y +             R          
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 43  ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                  +P    + T               L    + +             +       
Sbjct: 61  PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +              E      S   +  
Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|212640498|ref|YP_002317018.1| flagellar hook-basal body protein [Anoxybacillus flavithermus WK1]
 gi|212561978|gb|ACJ35033.1| Flagellar hook-basal body protein [Anoxybacillus flavithermus WK1]
          Length = 274

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/285 (9%), Positives = 70/285 (24%), Gaps = 21/285 (7%)

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID 255
             + ++ + + + +    N +   +        E + +                  + + 
Sbjct: 10  NTMNQLQQQLDVISHNIANVNTTGFKKRDAVFGELLAQQFTNLPTTDEAPRLTPAGVRLG 69

Query: 256 GVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
                ++    + +G +    +  D  +              I    +       S N P
Sbjct: 70  VGAKVASTYMQMKQGSVVKTDRPLDLALTKEGQFFRIFVDGAIQYTRDGAFYLSPSANNP 129

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
              +                 T+    +                  +    N+       
Sbjct: 130 DELMIVTADGYAVLNENDEPITVRDGFKDIQVTQNGTMQFIAPNGNIMQTVNIGVSYITR 189

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                +   N    P      + T+     N                         + + 
Sbjct: 190 PQLMQALGDNRFAFPNGLNVEDATINLAGNNRNNI--------------------SLQQY 229

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 V L  E+S L+  ++SY ++ + I  +D+M+  L+ G++
Sbjct: 230 ALEQSNVELATEMSELMITQRSYQLNARAITLSDQMMG-LINGIR 273



 Score = 50.0 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A N  N   QQ   I  NI N +   + +RD +    
Sbjct: 1  MLRSMITAANTMNQLQQQLDVISHNIANVNTTGFKKRDAVFGEL 44


>gi|203284214|ref|YP_002221954.1| flagellar basal-body rod protein [Borrelia duttonii Ly]
 gi|203287753|ref|YP_002222768.1| flagellar basal-body rod protein [Borrelia recurrentis A1]
 gi|201083657|gb|ACH93248.1| flagellar basal-body rod protein [Borrelia duttonii Ly]
 gi|201084973|gb|ACH94547.1| flagellar basal-body rod protein [Borrelia recurrentis A1]
          Length = 154

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M L +  N A         +   I  NI N +         Y R   +  
Sbjct: 3  MGLFSSINTASTGLTAQRLRLDVIANNIANVETTRTADGGAYRRERIIFA 52



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN+ EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 108 GYVEFPNVNVVEEMVDMISASRAYEANSSVINSSKSMFRSALSILQ 153


>gi|149173757|ref|ZP_01852386.1| flagellar hook basal body protein flgG [Planctomyces maris DSM
           8797]
 gi|148847287|gb|EDL61621.1| flagellar hook basal body protein flgG [Planctomyces maris DSM
           8797]
          Length = 266

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 2/168 (1%)

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                 + DG +DL  +                ++  +         +   N+       
Sbjct: 100 GDGFFRVNDGTQDLYTRAGNFSLNANGNLVMASADKGYQLQPTISIPQDAINITISGDGV 159

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
                   +  +      +A    N  L+    N     E   S               +
Sbjct: 160 VSYQQQGSTQIQTAGNIQIARFINNQGLVRQGDNLYT--ETTGSGPSQFGDPGTEGRGQL 217

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +     V    EL  LIK ++++ ++++++   D+ LQT+    +
Sbjct: 218 RQGFLEQSNVEPVRELVELIKTQRNFELNSQVVQAADQTLQTVANLRR 265



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/220 (6%), Positives = 42/220 (19%), Gaps = 31/220 (14%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------SP 47
               +       S     I  N+ N+    Y +                         +P
Sbjct: 5   ALYSSATGMAANSFNLDIIANNLANSSTTAYKQSRANFEDIFYENFKLPGVQDNQGNITP 64

Query: 48  ENVTVVTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             + +           +     +   +       +   F  + +                
Sbjct: 65  TGIALGIGTRVQSTEGDFEQGSILPSNGTYDLAIVGDGFFRVND-------GTQDLYTRA 117

Query: 105 SKLRDSLESYSKNLS---EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                +        S      L  T+    + +    +       + +     +    I 
Sbjct: 118 GNFSLNANGNLVMASADKGYQLQPTISIPQDAINITISGDGVVSYQQQGSTQIQTAGNIQ 177

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
             R   ++  V      +   +      F D       ++
Sbjct: 178 IARFINNQGLVRQGDNLYTETTGSGPSQFGDPGTEGRGQL 217


>gi|259417939|ref|ZP_05741858.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B]
 gi|259346845|gb|EEW58659.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B]
          Length = 261

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 8/216 (3%)

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                 +      +   D  V     Q+    R    S          + N   + I   
Sbjct: 41  ADLHYQQISRAGTVNASDGTVLPTGVQVGLGVRPAAVSVYLNQGALSQTGNELDVAIDGN 100

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                       + T   + +  +    + + G      +   ++             ++
Sbjct: 101 GYFEVTLPSGETAYTRDGSFKRSAEGLIVTNDGYPVSPEITIPEDANSISINAEGEVYAY 160

Query: 383 NKNFI------FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
             + +         ++G      L     N   + +   S   +           + + Y
Sbjct: 161 FNDTVEAELLGQLTLSGFTNPKGLEAVGSNL--FKQTEASGQPNTTEPGADGVGTLRQKY 218

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                V+   E++ LI+ ++ Y +++K+I   D+M+
Sbjct: 219 LEDSSVDAVREITELIEAQRGYEMNSKVISAVDQMM 254



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 26/140 (18%), Gaps = 28/140 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V         +  +    L    + +        +  +            +    
Sbjct: 63  PTGVQVGLGVRPAAVSVYLNQGALSQTGNELDVAIDGNGYFEV------TLPSGETAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDIL 123
               + S E          +
Sbjct: 117 DGSFKRSAEGLIVTNDGYPV 136


>gi|213026536|ref|ZP_03340983.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 110

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 26/115 (22%), Gaps = 9/115 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNM 62
            F++A +  N A+     I  NI N+    +               V          ++ 
Sbjct: 2   SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQDF 61

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            D         +        F  L +         +       + +        N
Sbjct: 62  TDGTTTNTGRGLDVAISQNGFFRLVD------SNGSVFYSRNGQFKLDENRNLVN 110


>gi|217976225|ref|YP_002360372.1| flagellar basal body rod protein FlgG [Methylocella silvestris BL2]
 gi|217501601|gb|ACK49010.1| flagellar basal-body rod protein FlgG [Methylocella silvestris BL2]
          Length = 262

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 55/180 (30%), Gaps = 2/180 (1%)

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
            +  + I           +       +      + D    +  +       Q  ++  ++
Sbjct: 76  SIRNLHIQGTLTNTGNKLDWALNGRGWFQVTDANGDTVYTRAGAFNTNGTGQIVTSDGYI 135

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                +      +V                  +      +A       L     N   + 
Sbjct: 136 VSPTMIVPTNAVDVTVSQSGMVSATLSGQPAPQQLGQISLANFANEAGLTPLGNNL--YR 193

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +   S S  + +     F  +S+SY  +  V+  +E++ LI  +++Y +++K+I    +M
Sbjct: 194 QTEASGSPIVGVPGDPGFATVSQSYLESSNVDPVKEITDLIAAQRAYEMNSKVIQAASEM 253



 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/261 (7%), Positives = 46/261 (17%), Gaps = 29/261 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
             + A           A I  NI N +   + R     T                     
Sbjct: 3   ALSIAATGMAAQDLNVAVIANNIANINTTGFKRARAEFTDLLYQAERLQGVSSRGQSNTI 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS- 99
                    V   + R          L    + +      + +  + +      +     
Sbjct: 63  PEGAQLGLGVRTASIR---NLHIQGTLTNTGNKLDWALNGRGWFQVTDANGDTVYTRAGA 119

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                +    + + Y  + +  +    V     +      T + +    +          
Sbjct: 120 FNTNGTGQIVTSDGYIVSPTMIVPTNAVDVTVSQSGMVSATLSGQPAPQQLGQISLANFA 179

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                  L                                + S +  +  I         
Sbjct: 180 NEAGLTPLGNNLYRQTEASGSPIVGVPGDPGFATVSQSYLESSNVDPVKEITDLIAAQRA 239

Query: 220 YTSDGTTLFETVPRDINFEKM 240
           Y  +   +      +    K 
Sbjct: 240 YEMNSKVIQAASEMESTVSKN 260


>gi|220932495|ref|YP_002509403.1| flagellar basal body rod protein [Halothermothrix orenii H 168]
 gi|219993805|gb|ACL70408.1| flagellar basal body rod protein [Halothermothrix orenii H 168]
          Length = 248

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 61/254 (24%), Gaps = 34/254 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------------RDTMT 43
           ++     A +      ++   +  N+ N +   Y R                   + T  
Sbjct: 1   MIKGIYTAASSMVTNQRKMKLVANNLANVNTAGYKRDEGIQVSFPEVFISRLEKGQATPL 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V +     +  +  +  ++   + +        F          +         
Sbjct: 61  GELGTGVKIEE---DYTDFREGQMNHTGNPLDVAIDGNGF-------FVVETPRGRRYTR 110

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + +          +        + +     +   + Q    + + +  L +   
Sbjct: 111 NGNFTVNEQGQIVTQQGYPVLGE-RGPLQTIRGRNISINTDGQLYLDNLEGDRLLIVDFE 169

Query: 164 RRF----LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            R     + E   VN+ I+   AS +       +   +      +  I        +  V
Sbjct: 170 NRQGLRKIGENLYVNEGIREIQASDYQIKQGYLETSNVNIVKEMVRMIEVNRAFEVNQKV 229

Query: 220 YTSDGTTLFETVPR 233
             +   TL + V  
Sbjct: 230 IKNADQTLSKAVNN 243



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            I + Y  T  VN+ +E+  +I+V +++ ++ K+I   D+ L   +  V
Sbjct: 196 QIKQGYLETSNVNIVKEMVRMIEVNRAFEVNQKVIKNADQTLSKAVNNV 244


>gi|84514831|ref|ZP_01002194.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53]
 gi|84510990|gb|EAQ07444.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53]
          Length = 261

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 2/166 (1%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
            + +       F    + D      +  S +   +    +   ++             V 
Sbjct: 91  NSFDLAIEGQGFFQVLMPDGRVGYTRNGSFSRSADGTMTTASGYVVQPEIRIPADATEVN 150

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                   +    +   +      +A       L     + +       S +  +     
Sbjct: 151 ISQDGLVSVRQAGEEEAQEVGQLTIASFANPRGLQPIGESFVTQ--TLASGAPTVAAPQA 208

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                + +       VN+ ++L  +I+ +++Y +S+K I  +D+M+
Sbjct: 209 QGLGKLMQGALEGSNVNVVQQLVEMIETQRAYEVSSKAISSSDEMM 254



 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 30/152 (19%), Gaps = 27/152 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT----------- 51
           +    + A+   N    +   I  N+ N +   +             V            
Sbjct: 1   MTNAMHVAKTGLNAQQTRMQVIANNLANLNTVGFKSDRVNFESLLYQVKRSGGDQTSEGT 60

Query: 52  --------VVTQRSENKN--MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                       R+ N         +    ++       Q F  +               
Sbjct: 61  ALTSALALGTGVRAVNTQKLYTQGGMVNTDNSFDLAIEGQGFFQVL------MPDGRVGY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                   S +      S  ++   +   A+ 
Sbjct: 115 TRNGSFSRSADGTMTTASGYVVQPEIRIPADA 146


>gi|303239789|ref|ZP_07326313.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2]
 gi|302592726|gb|EFL62450.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2]
          Length = 265

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 6/216 (2%)

Query: 266 AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
               GK   L     S +                +  +          V G       + 
Sbjct: 55  MDGDGKPVNLQVGHGSSIVATSKSFGIGNLEKTDNPLDFAIDGDGFFTVSGPKGTAYTR- 113

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
            D      +SE           P     G  ++     +   ++ + +L           
Sbjct: 114 -DGNFKISVSEDGNKLTTSDGYPVLDDTGAEINIDVDVSKLIVSDFGELSYTDDTGVVVP 172

Query: 386 FIF-DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                 +   +    L     N       N +    +        +++ + Y  +  V +
Sbjct: 173 LGQKIGIVKFSNRQGLESMGSNLY---ASNSASGEAVQDAEMGTVSNVKQYYIESSNVQV 229

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            EE+  LI  +++Y I++K +   D ML       +
Sbjct: 230 VEEMVKLIVAQRAYEINSKAVQTADDMLGIANSLKR 265



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 49/233 (21%), Gaps = 22/233 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           ++     A +           I  N+ N +   Y +                        
Sbjct: 1   MMRALWTAGSGMTAQQLSVDVISNNLSNVNTTAYKKERVEFKDMLYETLNRASVMDGDGK 60

Query: 47  ---PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-- 101
               +     +  + +K+     L    + +        F  +          + +    
Sbjct: 61  PVNLQVGHGSSIVATSKSFGIGNLEKTDNPLDFAIDGDGFFTVSGPKGTAYTRDGNFKIS 120

Query: 102 -HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + + Y             +D ++ +V +F   +            +    +
Sbjct: 121 VSEDGNKLTTSDGYPVLDDTGAEINIDVDVSKLIVSDFGELSYTDDTGVVVPLGQKIGIV 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
               R   E    N       + +      +     + Q   E   +  +   
Sbjct: 181 KFSNRQGLESMGSNLYASNSASGEAVQDAEMGTVSNVKQYYIESSNVQVVEEM 233


>gi|296126376|ref|YP_003633628.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563]
 gi|296018192|gb|ADG71429.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563]
          Length = 282

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 72/258 (27%), Gaps = 17/258 (6%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            T    +  E +      + +  + + S     ++  +           + +  +L +  
Sbjct: 37  DTVSFKSFPEMMAARTEDDGVVIFPLGSTDVRPYVGRMGTGVEVNEVFTEWEQGSLRETG 96

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           + +     ++         G    ++       +     +      +  +      +T  
Sbjct: 97  NQLDIALGDKGFFAVETPHGERYTRN--GSFLIDKDHYLVTKHGYKVMGENGYIQIKTNN 154

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
            N       S  R     +    +N               D+       +         +
Sbjct: 155 FNIDEEGRVSINRRYQDGNTFVQFNDNEWED-----EEILDTLKIVRFDNERYLKKEGES 209

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
                     W++ + S    +  K  V    +   +     VN   E+  +I+V+++Y 
Sbjct: 210 F---------WVDTDISGPAYIAQKG-VDRPKVLSRFLEMSNVNPVNEMVRMIEVQRAYE 259

Query: 460 ISNKLIMFTDKMLQTLLE 477
           +++K I   D ++  ++ 
Sbjct: 260 LNSKTISTHDTLVGRVIN 277



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/185 (7%), Positives = 30/185 (16%), Gaps = 40/185 (21%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45
               +       +   +  N+ N D   + R                             
Sbjct: 6   YTGASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKSFPEMMAARTEDDGVVIFPLGST 65

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V              L    + +      + F        A +  +
Sbjct: 66  DVRPYVGRMGTGVEVNEV---FTEWEQGSLRETGNQLDIALGDKGF-------FAVETPH 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                         + Y        +         +           V   R   D    
Sbjct: 116 GERYTRNGSFLIDKDHYLVTKHGYKVMGENGYIQIKTNNFNIDEEGRVSINRRYQDGNTF 175

Query: 158 LEISN 162
           ++ ++
Sbjct: 176 VQFND 180


>gi|260893854|ref|YP_003239951.1| fagellar hook-basal body protein [Ammonifex degensii KC4]
 gi|260865995|gb|ACX53101.1| fagellar hook-basal body protein [Ammonifex degensii KC4]
          Length = 260

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/158 (5%), Positives = 25/158 (15%), Gaps = 16/158 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------------TTIS 46
           ++     A +  N           N+ N     + +                     T  
Sbjct: 1   MIRGIYIAASGLNLQQALLDVTANNLANLSTPGFKQDRLTATTFAEVLLYRLEREGITAI 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                         +     L    +      + + F             + +       
Sbjct: 61  GTTNYGTLPERSYTDFTQGALVETGNYRDVALVGEGFLVADTPQGIRYFRSGTLFVDREG 120

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
              +              +   ++   +       A  
Sbjct: 121 YLTTATGDRVLGEGRRPIQVGEESFTILPDGTVEVAGR 158



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 25/51 (49%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            V   + + +     V+L  E++ L    ++Y ++++ +   D++L  ++ 
Sbjct: 204 AVGTLVRQGWLEAANVDLAGEMARLCTCLRAYQLASRALKTHDELLNRIIN 254


>gi|218677554|ref|ZP_03525451.1| flagellar basal body rod protein FlgG [Rhizobium etli CIAT 894]
          Length = 205

 Score = 59.7 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 4/169 (2%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                + +          I+  D       +     N Q +       +          +
Sbjct: 30  TQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDGYEVLPGITIPTGS 89

Query: 365 VKNLAGYPDLINHYCDSFN--KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +        ++                +A       L     N   + E   S    + 
Sbjct: 90  TELTISRSGEVSAKLPGATSATTLGQLTLADFVNEAGLQPIGDNL--FQETAASGDAVVG 147

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +  F ++ + Y  +  V+  +E++ LI  +++Y +++K+I   D+M
Sbjct: 148 NPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 196


>gi|197104381|ref|YP_002129758.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum
           HLK1]
 gi|196477801|gb|ACG77329.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum
           HLK1]
          Length = 262

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 2/166 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       F    +   +    +  + ++    Q  +   +  + G    +   +V   
Sbjct: 93  LDMAIDGRGFFQVLLPSGETAYTRAGNLSVNDQGQLVTQDGYPIEPGITIPQDAVDVAIS 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                 +     +         +A       L     N   + E   S      +  +  
Sbjct: 153 KSGQVQVTQAGQTAPTIVGQLELATFLNEGGLQAQGSNL--FKETAASGPPTNGIPGENG 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              + + Y+    V+   E++ LI  +++Y +++K+I   D ML T
Sbjct: 211 VGELIQGYTEASNVDAVAEITALIVAQRAYEMNSKVISTADNMLAT 256



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/221 (6%), Positives = 39/221 (17%), Gaps = 34/221 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A             I  NI N +   + R+                          
Sbjct: 3   ALRTAATGMAAQQLNVEVISNNIANMNTVAFKRQRAEFQDLLYQTFEAAGVQSSDQGTIV 62

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V   +            L    + +      + F  +            + 
Sbjct: 63  PTGVQVGAGVKAGSVYRI---ATQGTLTRTENKLDMAIDGRGFFQVL------LPSGETA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                 L  + +          +   +    + V    + S +            I  ++
Sbjct: 114 YTRAGNLSVNDQGQLVTQDGYPIEPGITIPQDAVDVAISKSGQVQVTQAGQTAPTIVGQL 173

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                          +  FK  +           +  + ++
Sbjct: 174 ELATFLNEGGLQAQGSNLFKETAASGPPTNGIPGENGVGEL 214


>gi|291280521|ref|YP_003497356.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans
           SSM1]
 gi|290755223|dbj|BAI81600.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans
           SSM1]
          Length = 254

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 24/150 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------T 44
           +L     A +     +++   I  N+ N +  +Y R D +                    
Sbjct: 1   MLNGLYTATSGMLAQNRKLEIISNNLANINTTSYKREDAIFRDYLYHDKRTPQDIIKASE 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +      V+  S   +     L    +              K    A +          
Sbjct: 61  YNKTINNTVSLDSIYTDFSPGNLRQTGNRFDLA------LENKNTFFAVETPFGIRFTRD 114

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                  +    N     +     +N E +
Sbjct: 115 GHFTLDKDRRLVNQDGFPVLSRNFENNEGI 144



 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + + Y     VN  +E+  +I+  + +    K+I   D++
Sbjct: 203 VRQGYLEGSNVNPVKEMVSMIESMRGFETYQKVIQTIDEI 242


>gi|68164563|gb|AAY87292.1| predicted flagellar basal-body rod protein [uncultured bacterium
           BAC17H8]
          Length = 259

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +   + L +V  ++    +   Y D    +     +A    +  L     +   +    
Sbjct: 139 DAAGNETLLDVIKISNTGKIQLTYGDGEMVDAGTLALAHFANSGGLKPVGGSY--FKATE 196

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           +S    L   +Q  F  I + +      N+  EL+ L+  +Q+++ S++L+   
Sbjct: 197 KSGPAILGSPTQQNFGEIVQGHLEMSNTNVANELTKLMVSQQAFSASSRLMQSA 250



 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 28/136 (20%), Gaps = 19/136 (13%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------TISPENVTVVT 54
            +  +N    A+   + I  NI N+ +  + R D                     V    
Sbjct: 2   ISTIRNALKMATTDISIISNNIANSGSTGFKRSDGNFLHSYAEEIPIPGLNVGFGVVHEE 61

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R ++       L   ++++               ++                       
Sbjct: 62  PRRQDHK--QGSLRVTNNSLDLAINGGGMF-----VALKPDDGEVTFSRDGSFLIDFVGN 114

Query: 115 SKNLSEDILGKTVIDN 130
                   +     + 
Sbjct: 115 LVTTDNRRVVGANGEQ 130


>gi|46204473|ref|ZP_00049952.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum
           magnetotacticum MS-1]
          Length = 127

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +       N  ++     +   Y +          VA       L   A +   + +  
Sbjct: 8   QNGYASGTLNSVDVGENGVITGKYSNGSLIGLARVEVAQFVNPDGLK--ADSLGNYQQTV 65

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S      +K   V              ++  E S +I  +Q+Y+ + +++     M+  
Sbjct: 66  ASGEAISGLKDTTVVGA----NVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISD 121

Query: 475 LLEGVK 480
           LL  ++
Sbjct: 122 LLNVIR 127


>gi|320536024|ref|ZP_08036083.1| putative flagellar basal-body rod protein FlgF [Treponema
           phagedenis F0421]
 gi|320147123|gb|EFW38680.1| putative flagellar basal-body rod protein FlgF [Treponema
           phagedenis F0421]
          Length = 271

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 35/168 (20%), Gaps = 40/168 (23%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM--------TTIS 46
             A +  N   QQ   I  N+ N D  +Y R             R T            S
Sbjct: 6   YTAASGMNAQQQQLDVISNNLANVDTTSYKRDVTINKNFPELLLRRTNDDGVIKNPFGSS 65

Query: 47  ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V              L    S        + F A++     +    
Sbjct: 66  DAAPIIGKLGLGVEVNEV---FTEFEQGSLKQTHSPSDIALEGKGFFAVQTPQREE---- 118

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
                        +E Y        +         + ++       E+
Sbjct: 119 ---YTRNGNFLVGVEGYLMTKEGYPVLGENGRIFLQDMEYKINQNGEI 163



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +     VN+  E+  +I+V ++Y  + K I   D M+  L  
Sbjct: 222 QGFIEASNVNVVNEMVRMIEVNRAYEANQKTIQSEDTMMAKLWN 265


>gi|84502379|ref|ZP_01000515.1| flagellar basal body rod protein FlgG [Oceanicola batsensis
           HTCC2597]
 gi|84389191|gb|EAQ01988.1| flagellar basal body rod protein FlgG [Oceanicola batsensis
           HTCC2597]
          Length = 261

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +       +    + D +    +  S  +    Q  +   +  + G V  +    V+  
Sbjct: 93  TDLAIEGRGYFVVNMPDGNAAYTRDGSLRLNAEGQIVTQQGYEVNPGIVVPQDTTRVEIG 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
                      D+         +A    +  +     N +       S            
Sbjct: 153 ETGIVSAYVGNDAIPVEIGQLTLATFINDAGMRPLGNNLLA--ATVASGDPTQANPGDPA 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
              + + Y  T  VN+ ++++ LI  +++Y +++K I   D+M+ T
Sbjct: 211 VGILRQGYLETSNVNIIQQITDLISAQRAYEMNSKSIETADQMMST 256



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 7/41 (17%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A             I  NI NA    +          
Sbjct: 3  ALGIAATGMMAQQTNVDVISNNIANASTTGFKSARASFQDL 43


>gi|300870979|ref|YP_003785850.1| flagellar basal body rod protein FlgC [Brachyspira pilosicoli
          95/1000]
 gi|300688678|gb|ADK31349.1| flagellar basal body rod protein, FlgC [Brachyspira pilosicoli
          95/1000]
          Length = 153

 Score = 59.3 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMT 43
          M + ++ N + +       +   I  NI N +         + R   + 
Sbjct: 1  MGIFSIINTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVVF 49



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN   E+  +++  ++Y  ++ +I     M  + L  ++
Sbjct: 105 KAGYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALNIIR 152


>gi|295707198|ref|YP_003600273.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium
           DSM 319]
 gi|294804857|gb|ADF41923.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium
           DSM 319]
          Length = 273

 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/276 (10%), Positives = 70/276 (25%), Gaps = 7/276 (2%)

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             I+               G  L  T          +   +  +      D         
Sbjct: 4   TMITAANTMGQLQQQLDVIGHNLSNTNTTGYKARDASFNDMLYQQVNNQEDKGTEKRLTP 63

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
           + + +G    L Q   +++       D++  V + + +    +A N    P  +  DG  
Sbjct: 64  AGIRQGTGAYLDQTSLNMMQGSFQNTDKLLDVAVSNPNVYFQVAVNDSQQPVQYTRDGSF 123

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            +  +    +                     +  K    +                +   
Sbjct: 124 HISPQGPNNVKLVNGSGQDVLGENGQAIIFSNAFKDIQIDGSGTITVTTNKGVDQFTLGL 183

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
             +  P         L  +                            + +       V+L
Sbjct: 184 TNVQKPQVLEAKGENLFAFPAEMNQPNMFTDLTGKARETAG------VEQGKLEQSNVDL 237

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +EL+ +   +++Y  +++ I   D+M+  L+ G++
Sbjct: 238 SKELTDMSIAQRAYQFNSRSISIADQMMG-LVNGIR 272



 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 43/188 (22%), Gaps = 7/188 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A N      QQ   I  N+ N +   Y  RD                ++    
Sbjct: 1   MNRTMITAANTMGQLQQQLDVIGHNLSNTNTTGYKARDASFNDMLY----QQVNNQEDKG 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +K L       G    L        MM       +          +     + N S+  
Sbjct: 57  TEKRLTPAGIRQGTGAYLDQTS--LNMMQGSFQNTDKLLDVAVSNPNVYFQVAVNDSQQP 114

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +  T   +     Q  N   + V     D   E    I     F       +  I   T 
Sbjct: 115 VQYTRDGSFHISPQGPNNV-KLVNGSGQDVLGENGQAIIFSNAFKDIQIDGSGTITVTTN 173

Query: 183 SKHDAHDF 190
              D    
Sbjct: 174 KGVDQFTL 181


>gi|118444095|ref|YP_878000.1| flagellar basal body rod protein FlgG [Clostridium novyi NT]
 gi|118134551|gb|ABK61595.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT]
          Length = 258

 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 32/141 (22%), Gaps = 29/141 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     +++      ++  +I  N+ N+    Y R D                      
Sbjct: 1   MLRSIWNSRSGMAAEMEKLNTISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVTKGK 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
              +   V       +N       L    +        + F  +++          +   
Sbjct: 61  PQFTGTGVRATEIERDNSQ---GNLLQTGNNTDIAIDGEGFFKVQD------GEGRTFYT 111

Query: 103 YISKLRDSLESYSKNLSEDIL 123
                         + S + L
Sbjct: 112 RGGSFNIDNLGTVVDKSGNRL 132



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 24/41 (58%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            + + Y+    V+L +E++ LI  ++++ +++  +   D+M
Sbjct: 208 SLLQGYTEQSNVDLGKEMADLIITQRAFQLNSSALKTADEM 248


>gi|257457573|ref|ZP_05622740.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC
           35580]
 gi|257444959|gb|EEV20035.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC
           35580]
          Length = 271

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 29/148 (19%), Gaps = 40/148 (27%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---------------------TTIS 46
             A +  N   +Q   I +N+ NAD  +Y R                            S
Sbjct: 6   YTAASGMNAQQKQLDVIAQNLANADTTSYKRDVATHKNFPELLIRRLNDDGVVKNPFGSS 65

Query: 47  ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V +              L   ++A       + F          +   
Sbjct: 66  DVAPIIGKLGLGVELNEI---FTEFEQGSLKQTNTASDLALEGKGF-------FCVETPY 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGK 125
                        +E Y        +  
Sbjct: 116 GERYTRNGNFTVGVEGYLMTKEGYPVLG 143



 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + + +     + +  E+  +I+V ++Y  + K I   D M+  L  
Sbjct: 220 VVQGFVEASNIKVVNEMVRMIEVNRAYEANQKTIQSEDTMMSKLWN 265


>gi|326389273|ref|ZP_08210841.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994636|gb|EGD53060.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 251

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 67/252 (26%), Gaps = 28/252 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           +L     A +     ++    +V N+ N +   Y R   +T+  P               
Sbjct: 1   MLRGLYTASSGMITQTKIMDVLVNNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPN 60

Query: 49  --------NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V V T    + N  +      +  +        F  +          + S 
Sbjct: 61  GKIGRMDYGVLVDT---FHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSF 117

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           T        + E Y        +  +  D + + + N   + + V ++R       +   
Sbjct: 118 TLSKDGYLVTQEGYIVEGENGPIQLSQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLR 177

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                        N  +   T             + + + ++    IS +    ++  V 
Sbjct: 178 KEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVV 234

Query: 221 TSDGTTLFETVP 232
            +   TL + V 
Sbjct: 235 IAFDETLGKAVN 246



 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + +     VN  +E+  +I V ++Y  + K+++  D+ L   + 
Sbjct: 199 GKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246


>gi|296127542|ref|YP_003634794.1| flagellar basal-body rod protein FlgC [Brachyspira murdochii DSM
          12563]
 gi|296019358|gb|ADG72595.1| flagellar basal-body rod protein FlgC [Brachyspira murdochii DSM
          12563]
          Length = 153

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMT 43
          M + ++ N + +       +   I  NI N +         + R   + 
Sbjct: 1  MGIFSIINTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVIF 49



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN   E+  +++  ++Y  ++ +I     M  + L  ++
Sbjct: 105 KAGYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALNIIR 152


>gi|322383079|ref|ZP_08056906.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152741|gb|EFX45367.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 271

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 4/203 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L     + +    +   +       +  +          +         K    +L   
Sbjct: 61  GLQLGWGARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVM 120

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                        +     +G  +        K       +      +         V  
Sbjct: 121 PGNQGLALTTKDGHYVSGLNGEPIILPPNTQPKIDEQGNVVAYSETGARPVQVGRIRVVQ 180

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH----ISESYSNTVGVNLQEELS 449
           I     L     N                     V       + + Y     VNL +E++
Sbjct: 181 IERPQLLEAVGENLYTLKAGIEKGQALRDAAGLTVQEQGKLKVMQGYLEQSNVNLSDEMT 240

Query: 450 FLIKVEQSYNISNKLIMFTDKML 472
            LI V++++ +S++ +  +D M+
Sbjct: 241 ELINVQRAFQLSSRAVTSSDSMM 263



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
           N + +  N   Q+   +  NI N +   Y R+D       ++V 
Sbjct: 2  INASVS-MNGLQQKLDILANNIANINTVGYKRKDASFQEILKSVK 45


>gi|323174793|gb|EFZ60408.1| flagellar basal-body rod protein flgG domain protein [Escherichia
          coli LT-68]
          Length = 79

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +++    A+   +        I  N+ N     + R+  +    
Sbjct: 1  MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44


>gi|302338075|ref|YP_003803281.1| flagellar basal-body rod protein FlgC [Spirochaeta smaragdinae
          DSM 11293]
 gi|301635260|gb|ADK80687.1| flagellar basal-body rod protein FlgC [Spirochaeta smaragdinae
          DSM 11293]
          Length = 152

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          M L +  N A    +    +   +  NI NA      +   + R   + 
Sbjct: 1  MGLFSSINVAATGMSAQRLRLDVVSDNIANASTARTPEGGPFRRSRVIF 49



 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN+ EE+  ++   +SY  +  ++  +  M    LE  +
Sbjct: 107 GYVEMPNVNIVEEMVDMMSASRSYEANVAVVNGSKAMFMRALEIGR 152


>gi|317011118|gb|ADU84865.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7]
          Length = 605

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/246 (7%), Positives = 63/246 (25%), Gaps = 26/246 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            + Y        +    +   ++   N      +++K+  +    +++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179

Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 +  LS    ++  +  K   K      L+ +  ++++      I+ +  ++N+ 
Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQEFLLNDKGEVIKERFLNQDINALANDDNEP 239

Query: 218 VVYTSD 223
           +   ++
Sbjct: 240 IDAITN 245



 Score = 57.0 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 15/232 (6%)

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
             S++  S+    +     +++  +V     +               D      ++ P  
Sbjct: 380 TNSNDPTSSPTSKRKNQTWEVKSYIVDP---KNKTPINEPTWEIVGFDSATHKMKSAPMT 436

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
               G K          SE    +     +   L        + ++    +     +   
Sbjct: 437 LDFKGNKL---TYSLDKSENHDSSDLTYQDSKLLEASQDGKPRGIFRDMRIEENGVISLA 493

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428
           + +   +      +     +  L +   N     E   +  +             + ++ 
Sbjct: 494 FSNGVVEPVARIGILAFTNDQGLRKIGGNVYEMQESTINGENRPLSGNPILGWDEEGKLK 553

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F  I   Y  T  VN    L+ LI +++ Y+++ K     D M++  +   K
Sbjct: 554 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNAKAFGAGDDMIKEAISLKK 605


>gi|255523679|ref|ZP_05390645.1| protein of unknown function DUF1078 domain protein [Clostridium
           carboxidivorans P7]
 gi|255512548|gb|EET88822.1| protein of unknown function DUF1078 domain protein [Clostridium
           carboxidivorans P7]
          Length = 264

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/272 (8%), Positives = 54/272 (19%), Gaps = 36/272 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L +   +++  N    +  SI  NI N     Y R D                      
Sbjct: 1   MLRILWGSKSAMNAQQDKLDSISNNIANESTTGYKREDVSFQDLVYETLNRKGYPNSGDN 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                +   V       +N       L    S        + +  +              
Sbjct: 61  PKEPINGTGVKATQWYRDN---TQGPLRQTDSKTDFAIDGEGYFRV------TLPNGTKA 111

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                           +   + L     +    +  +         +      +  E+ +
Sbjct: 112 YERAGSFNIDNNGDIVDKDGNRLDIEFTEEGSNLFNS----GTGFTQDNFAVKENGEIYL 167

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           +           +N        +     D L   +    +I+     + +     +  V 
Sbjct: 168 NVDNSNSVYYGKINVYNPVGQEALSSIGDNLYTAN-PGAQINVAQNSNVLQGKLEESNVN 226

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
                T      R          T       +
Sbjct: 227 IGKEMTDMIIAQRAFELSSKAMKTGDEMWGLV 258



 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 63/223 (28%), Gaps = 16/223 (7%)

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
               N    +    +KA    RD+     +    +              +   +      
Sbjct: 56  NSGDNPKEPINGTGVKATQWYRDNTQGPLRQT--DSKTDFAIDGEGYFRVTLPNGTKAYE 113

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
                  D +  +       + +      +     +  +    F  +   +    ++  +
Sbjct: 114 RAGSFNIDNNGDIVDKDGNRLDIEFTEEGS-----NLFNSGTGFTQDNFAVKENGEIYLN 168

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             +S +  +    V        L     N           +     ++  V     +   
Sbjct: 169 VDNSNSVYYGKINVYNPVGQEALSSIGDNLY----TANPGAQINVAQNSNVL----QGKL 220

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               VN+ +E++ +I  ++++ +S+K +   D+M   L+  +K
Sbjct: 221 EESNVNIGKEMTDMIIAQRAFELSSKAMKTGDEMWG-LVNSMK 262


>gi|154174960|ref|YP_001407311.1| hypothetical protein CCV52592_2049 [Campylobacter curvus 525.92]
 gi|153793155|gb|EAU00899.2| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 533

 Score = 58.9 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/398 (9%), Positives = 112/398 (28%), Gaps = 8/398 (2%)

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                 + +      + ++  ++++ + ++  L         ++ +     A    K+  
Sbjct: 135 FTPTTPSQNALKKFGQSQNIPQAFTLSQTDLSLAAEGAQTGIKLPKFLYLPAEATTKVNL 194

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
             + +  L  S     L   +                   +   +  L+K   ++     
Sbjct: 195 KGNLDSSLITSQTSTQLDSTSYTYTLDNANKTISLSGQVTIGGANSGLKKGDSVVVKVED 254

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                       D    +    + I +  M S  V++++                    G
Sbjct: 255 ASGKFSEFSTQIDENGNWSLNNQSIKYMDMASLNVSAKAIGNIEVANTQKLTTDLFNADG 314

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI------AGNSENVPGLFIADGIK 324
               L       +P   N+    A   I   +             +S           + 
Sbjct: 315 TKSLLTLNLTKKIPQASNETVWNATATITDSAGNVQNSASGALTFDSSGRLVSNTLASVG 374

Query: 325 DLDNKLCQGISETICVNPQYRSNPS-FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
           ++           +       +N +           + L +  ++    ++I ++ ++  
Sbjct: 375 NVALNFGGNGDANVYNGMTSAANKNKNFNITRDGYAEGLLSKYSMDDSGNVIANFDNTRT 434

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGV 442
                  +        + +   N       +       +   Q ++   I  +      V
Sbjct: 435 FPVAKVALYHFQNEQGVSKVGDNLYEATPNSGEAFFYKNKAGQTIYGANIIANKLEMSNV 494

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +L + L+ +I ++++Y+ S K I  +D+M+QT ++  +
Sbjct: 495 DLGQALTEVIVIQKAYDASAKSITTSDEMIQTAIKMKQ 532


>gi|242309753|ref|ZP_04808908.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT
           98-5489]
 gi|239523754|gb|EEQ63620.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT
           98-5489]
          Length = 277

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 29/143 (20%), Gaps = 25/143 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   F  +         +   I  NI NA+   + R D +                    
Sbjct: 1   MQGGFYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIEDQ 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                   N ++       +   D    +    +  +       + +      +      
Sbjct: 61  TKDAAKFYNRSLNRVPQIVEEFTD---RSAGGVVQTENTFDFALSRENAYFMIETPEGIR 117

Query: 101 THYISKLRDSLESYSKNLSEDIL 123
                    + E    N     +
Sbjct: 118 FSRDGSFVLNEEGRLVNKEGYAV 140


>gi|167463161|ref|ZP_02328250.1| flagellar hook-basal body protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 275

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 4/203 (1%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L     + +    +   +       +  +          +         K    +L   
Sbjct: 65  GLQLGWGARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVM 124

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
                        +     +G  +        K       +      +         V  
Sbjct: 125 PGNQGLALTTKDGHYVSGLNGEPIILPPNTQPKIDEQGNVVAYSETGARPVQVGRIRVVQ 184

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH----ISESYSNTVGVNLQEELS 449
           I     L     N                     V       + + Y     VNL +E++
Sbjct: 185 IERPQLLEAVGENLYTLKAGIEKGQALRDAAGLTVQEQGKLKVMQGYLEQSNVNLSDEMT 244

Query: 450 FLIKVEQSYNISNKLIMFTDKML 472
            LI V++++ +S++ +  +D M+
Sbjct: 245 ELINVQRAFQLSSRAVTSSDSMM 267



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
          +      A    N   Q+   +  NI N +   Y R+D       ++V 
Sbjct: 1  MNHSMINASVSMNGLQQKLDILANNIANINTVGYKRKDASFQEILKSVK 49


>gi|160939651|ref|ZP_02086999.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437442|gb|EDP15206.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 4/157 (2%)

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
                     IS T   N    S+ S++ D      +  +      G  D      D   
Sbjct: 92  PAYTRDGAFQISSTDDGNYLTTSDGSYVLDQDGEPIELEYKTSEDGGDNDAGELDLDGLV 151

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           +      +        L     N     E +        +  +   +            N
Sbjct: 152 ERIG---LFVCENPEGLQHVGMNLFRTGETSGEWLSMDDLDDEQEKSKAMSHALEMSNCN 208

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  E+  L++ ++++ ++++++   D+M + ++  ++
Sbjct: 209 MSTEMVNLMQTQRAFQLNSRIVTTADQM-EEMINNLR 244



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 47/199 (23%), Gaps = 10/199 (5%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVVTQRSEN---KNMF 63
            N   +       N+ N     Y    +                 V      +       
Sbjct: 1   MNAFQKDLDVTSNNMANISTNGYKSMRSSFNDLLYTQMDMRPQAQVGHGVRNDGPGTTFQ 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
             +       +       +F A++     ++        +     D     + +    +L
Sbjct: 61  QGIFRKTDRELDFAISGNAFFAIQTSEDEEEPAYTRDGAFQISSTDDGNYLTTSDGSYVL 120

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
            +       E   + +    +  ++  D   E             +   +N     +T+ 
Sbjct: 121 DQDGEPIELEYKTSEDGGDNDAGELDLDGLVERIGLFVCENPEGLQHVGMNLFRTGETSG 180

Query: 184 KHDAHDFLDQRDVLLQKIS 202
           +  + D LD      + +S
Sbjct: 181 EWLSMDDLDDEQEKSKAMS 199


>gi|288554367|ref|YP_003426302.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4]
 gi|288545527|gb|ADC49410.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4]
          Length = 281

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 15/243 (6%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
                 T     N I +      +     + +G I+   +  D  +    +  +  +   
Sbjct: 53  TDTRYETGRLTPNGIRVGAGAKIAQTALRMEQGAIQNTDRRLDFAITQPNHFFEVQSVEN 112

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             + +          N              N                  +   L   G +
Sbjct: 113 GQAVNRLTREGAFYLNEDPDNPGQLTIVNANGEYLLDGGGNRFTLPMNFSDIQLSPTGEL 172

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                 NV         + H         + D    I     L     +    +  +   
Sbjct: 173 RVTLNDNVTTEELGQVQLIHVLKPHLLEAVGDTHFTIPNLENLGLMDADMFEQVPGDE-- 230

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                         + ++      VN+ +E++ L++ ++ Y  + + +   D+M   L+ 
Sbjct: 231 ------------GRLMQNALEQSNVNIAQEMNELLQTQRHYQFNARALSMADEM-NGLIN 277

Query: 478 GVK 480
           G++
Sbjct: 278 GIR 280



 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 4/29 (13%), Positives = 14/29 (48%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46
           ++  ++  N+ N++   + RR+   +  
Sbjct: 16 QRKMDTLSHNMANSNTTGFKRREATFSDL 44


>gi|119953550|ref|YP_945760.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135]
 gi|119862321|gb|AAX18089.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135]
          Length = 286

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           +   +   N         L++ Y +S+    + D +  +N   T     + S  W     
Sbjct: 162 TAQGQIFHNSTFERNPKKLVSEYENSWENYELLDNLKIVNFEKTRFLQKQGSSLWNSTEI 221

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           S        +      I         VN   E+  +I V ++Y  + K I   D +L  L
Sbjct: 222 SGQARNIEINS--RPKIETGTLEGSNVNAINEMVSMITVNRAYEANQKTIQTEDSLLGKL 279

Query: 476 LE 477
           + 
Sbjct: 280 IN 281



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/208 (6%), Positives = 33/208 (15%), Gaps = 40/208 (19%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT-------------------- 41
               A +       +   I  N+ N D   Y +    +                      
Sbjct: 8   GIYTAASGMMAQRHRLDVIANNLANIDLTGYKKDLSVQKAFPEMLIRRINDDGLYKFPKG 67

Query: 42  ------MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                 +       V          +     L    + +             E       
Sbjct: 68  YLETAPVIGKLGTGVEENEI---YTSFEQGPLKITGNPLDLALT-------DEGFFVVQT 117

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                           E          +         +      T+  ++          
Sbjct: 118 PEGERYTRNGSFILGAEGILMTKDGYPVIGEKGYIYLKDNNFKITAQGQIFHNSTFERNP 177

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTAS 183
            +L       + +   + N  I     +
Sbjct: 178 KKLVSEYENSWENYELLDNLKIVNFEKT 205


>gi|302874614|ref|YP_003843247.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
 gi|307690775|ref|ZP_07633221.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans
           743B]
 gi|302577471|gb|ADL51483.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
          Length = 255

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 69/246 (28%), Gaps = 3/246 (1%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           +LF      +N ++    T+++    +   G     +  S +       L          
Sbjct: 3   SLFWNSKSSMNAQQNKLDTISNNIANVNTTGYRALQSNFSDLVYDSYNRLGTPNSGKDTE 62

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               L      L  +       +     V   F  DG          G            
Sbjct: 63  L---LIGTGTRLASTIRNDVQGSLLETKVSTEFALDGPGFFKITTADGTEAYTRNGSFKI 119

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            +   L D         +N + +   P+      D        +    +           
Sbjct: 120 DSNGDLCDDKGNYLSIEFNGQPVKFNPNNFAVNPDGTITVKEGEAARTVGRIPIFNAIGN 179

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           +S   +  +     D     +     I + Y     V++ +E++ +I  ++++ +S+K++
Sbjct: 180 DSFSSIADSLYVPKDGVQVYRENNTDILQGYLENSNVDMSKEMTDMIVTQRAFELSSKVL 239

Query: 466 MFTDKM 471
              D+M
Sbjct: 240 STGDQM 245



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 33/133 (24%), Gaps = 12/133 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSEN 59
           +L++F  +++  N    +  +I  NI N +   Y    +  +    +           ++
Sbjct: 1   MLSLFWNSKSSMNAQQNKLDTISNNIANVNTTGYRALQSNFSDLVYDSYNRLGTPNSGKD 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH---------YNNSPTHYISKLRDS 110
             +        +S I         E       A D                      +  
Sbjct: 61  TELLIGTGTRLASTIRNDVQGSLLETKVSTEFALDGPGFFKITTADGTEAYTRNGSFKID 120

Query: 111 LESYSKNLSEDIL 123
                 +   + L
Sbjct: 121 SNGDLCDDKGNYL 133


>gi|223889387|ref|ZP_03623973.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           64b]
 gi|223885073|gb|EEF56177.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           64b]
          Length = 282

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K I   D
Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIEIETLEASNVNAVKEMVLMIEINRAYEANQKTIQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42
           ++     A +      ++  ++  N+ N D   Y +             R          
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 43  ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                  +P    + T               L    + +             +       
Sbjct: 61  PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +              E      S   +  
Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|118581848|ref|YP_903098.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379]
 gi|118504558|gb|ABL01041.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379]
          Length = 245

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 32/130 (24%), Gaps = 6/130 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT---VVTQRSEN 59
           + +    A +    A ++  +I  N+ N +   + +   +        +    V Q S  
Sbjct: 1   MNSGMYAALSGSIAAMKRMDTISNNLANVNTPGFKKDKMLFESMLAGTSNPPAVPQSSTA 60

Query: 60  KNMFDK---VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +  K    +     +  Q      F    +                   R S++    
Sbjct: 61  DPIMQKESVYIDYGVGSASQTGNPLDFAIDGDGFFVIQTPQGRAYTRQGNFRLSVDGTLV 120

Query: 117 NLSEDILGKT 126
                 +   
Sbjct: 121 TADGFPVLGQ 130



 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/190 (8%), Positives = 52/190 (27%), Gaps = 1/190 (0%)

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +    N              +K+ +  +          + +    +     + +T     
Sbjct: 45  LAGTSNPPAVPQSSTADPIMQKESVYIDYGVGSASQTGNPLDFAIDGDGFFVIQTPQGRA 104

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
             R     L   G++     + V        +     D  ++  +        T +++++
Sbjct: 105 YTRQGNFRLSVDGTLVTADGFPVLGQDDVIRIQGGQVDVNSRGEVTVDGTPTGTMISIVD 164

Query: 403 YARNSIGWLEKNRSDSHDL-HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           + +        +            Q     I +       V+   E+  +I+  + ++  
Sbjct: 165 FPKPYNLTKVSSAQFVPANPQATPQAATGSIRQGQLEGSNVDTITEMVQMIETTRYFDAC 224

Query: 462 NKLIMFTDKM 471
            ++I   D M
Sbjct: 225 QRVIKGFDDM 234


>gi|225619783|ref|YP_002721040.1| flagellar basal body rod protein FlgC [Brachyspira hyodysenteriae
          WA1]
 gi|225214602|gb|ACN83336.1| flagellar basal body rod protein FlgC [Brachyspira hyodysenteriae
          WA1]
          Length = 153

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMT 43
          M + ++ N + +       +   I  NI N +         + R   + 
Sbjct: 1  MGIFSIINTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVIF 49



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN   E+  +++  ++Y  ++ +I     M  + L  ++
Sbjct: 105 KAGYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALNIIR 152


>gi|291278935|ref|YP_003495770.1| flagellar basal-body rod protein FlgC [Deferribacter
          desulfuricans SSM1]
 gi|290753637|dbj|BAI80014.1| flagellar basal-body rod protein FlgC [Deferribacter
          desulfuricans SSM1]
          Length = 134

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISP-----EN 49
          MS   +   A    +    +   I  N+ NA+         Y +R+ +            
Sbjct: 1  MSYFDILKIASTGLSAQRIRINVISSNLANANTTRTEDGTPYQKREVIFRTILDGELRGG 60

Query: 50 VTVVTQRS 57
          V V     
Sbjct: 61 VRVEKVVR 68



 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 4/26 (15%), Positives = 14/26 (53%)

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKM 471
           EE+  +++  +SY  +  ++    ++
Sbjct: 99  EEMVNMLEASRSYEANVTVLNTAKQL 124


>gi|207092210|ref|ZP_03239997.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1]
          Length = 605

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNTLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|320107042|ref|YP_004182632.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis
           SP1PR4]
 gi|319925563|gb|ADV82638.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis
           SP1PR4]
          Length = 262

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 50/213 (23%), Gaps = 1/213 (0%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             G  +        +      +      ++      +     +       F      D  
Sbjct: 51  TPGSAETTQTTSAGLQIGLGTKSVASEVIMTQGDFNQTGNQYDLAIQGQGFFQVIRPDGT 110

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +  S       Q  +    L            +V   A           +      
Sbjct: 111 LAYTRAGSFPPNGQGQLATVNGDLLTPAISIPANATSVTISAYGVVTAAVPGSTTGTQLG 170

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
              +A       L     N          ++             + ++Y     V++ EE
Sbjct: 171 TIQLATFPNPGGLNSLGGNLF-QPTLASGNAITDLPGGNSGMGTLQQTYLENSNVDVVEE 229

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              ++  +++Y  ++K+I   D M   +   ++
Sbjct: 230 FVQMVMAQRAYESNSKVIHVADDMYSQINGLIR 262



 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 49/248 (19%), Gaps = 22/248 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           ++     A +  +       +I  N+ N+    + RR            V    +E    
Sbjct: 1   MIRALYTAASGMSAQQANLDTIANNLANSATSGFRRRRLQFEDMVYQNLVTPGSAETTQT 60

Query: 62  -------------------MFDKVLHAHSSAIGQQRLLQSFEALK--EMMSADDHYNNSP 100
                              M     +   +        Q F  +   +   A     + P
Sbjct: 61  TSAGLQIGLGTKSVASEVIMTQGDFNQTGNQYDLAIQGQGFFQVIRPDGTLAYTRAGSFP 120

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
            +   +L                  T +  +   V                         
Sbjct: 121 PNGQGQLATVNGDLLTPAISIPANATSVTISAYGVVTAAVPGSTTGTQLGTIQLATFPNP 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             L      L     A           +  +        + S +  +   V+       Y
Sbjct: 181 GGLNSLGGNLFQPTLASGNAITDLPGGNSGMGTLQQTYLENSNVDVVEEFVQMVMAQRAY 240

Query: 221 TSDGTTLF 228
            S+   + 
Sbjct: 241 ESNSKVIH 248


>gi|239628977|ref|ZP_04672008.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519123|gb|EEQ58989.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 255

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +          ++  E+  L++ ++++ ++++++   D+M + ++  ++
Sbjct: 206 SSVMTRTLEMSNADMSTEMVNLMQTQRAFQLNSRIVSTADQM-EEMINNLR 255



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 10/135 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN----------VTV 52
           +   +  A +  N   Q       N+ N     Y    +                     
Sbjct: 1   MNISYYTAVSAMNAFQQDLDVTANNMANVGTNGYKSMRSDFNDLLYTQMDMRPEAQVGHG 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V            +      A+      ++F A++     ++        +     +   
Sbjct: 61  VKNNGPGTTFQQGIFRKTGRALDFAVSGKAFFAIQTSEDEEEPAYTRDGAFQISSTEDGN 120

Query: 113 SYSKNLSEDILGKTV 127
             + +    +L    
Sbjct: 121 YLTTSDGSYVLDWDG 135


>gi|172058672|ref|YP_001815132.1| hypothetical protein Exig_2667 [Exiguobacterium sibiricum 255-15]
 gi|171991193|gb|ACB62115.1| protein of unknown function DUF1078 domain protein [Exiguobacterium
           sibiricum 255-15]
          Length = 260

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 57/253 (22%), Gaps = 10/253 (3%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L  T     N          S+ N + +  +       +         L       V   
Sbjct: 18  LDTTGHNLANANTNGYKRRDSQFNELLVRNLNNQPAGLTPGSLTTPAGLRLGVGGYVANE 77

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
             +         G   +      +                D            V     +
Sbjct: 78  ATRFATGTFQNTGRKLDAALSNPHHFFGVIDADGVTKFTRDGNFELSPQANGQVLLTDDA 137

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
             S +                       I    +   +      VA I  +  L +    
Sbjct: 138 GRSVINQANEPITFPDDATSIELNKDGNITGVLNGERRVLARIGVADIPNHGELTDVGGG 197

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
                                  N ++     T  V++  E++ L +++++Y  ++K + 
Sbjct: 198 LYTTAG----------QYQNATGNPLTVGTLETSNVDMATEMTNLTQIQRAYQFNSKALT 247

Query: 467 FTDKMLQTLLEGV 479
            +D+M+  +    
Sbjct: 248 TSDQMMGIVTSLK 260



 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 15/41 (36%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              + +      +Q  +   N+ NA+   Y RRD+     
Sbjct: 3  SLYTSASTMAQLQKQLDTTGHNLANANTNGYKRRDSQFNEL 43


>gi|317009564|gb|ADU80144.1| flagellar hook protein FlgE [Helicobacter pylori India7]
          Length = 605

 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            + Y        +    +   ++   N      +++K+  +    +++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179

Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 +  LS    ++  +  K   K     FL+ +  ++++      I+ +  ++N+ 
Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEMIKERFLNQDINALANDDNEP 239

Query: 218 VVYTSD 223
           +   ++
Sbjct: 240 IDAITN 245



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGAQDFFLNDKGEMIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLNADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|2494522|sp|P70911|FLGC_BORHE RecName: Full=Flagellar basal-body rod protein flgC
 gi|1621621|gb|AAB51474.1| flagellar rod protein FLgC [Borrelia hermsii]
          Length = 59

 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M L +  N A         +   I  NI N +        +Y R+  +  
Sbjct: 1  MGLFSSINTASTGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRVIFA 50


>gi|187918628|ref|YP_001884193.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH]
 gi|119861476|gb|AAX17271.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH]
          Length = 282

 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           I         VN   E+  +I V ++Y  + K I   D +L  L+ 
Sbjct: 232 IETGALEGSNVNAINEMVSMITVNRAYEANQKTIQTEDSLLGKLIN 277



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/211 (7%), Positives = 34/211 (16%), Gaps = 40/211 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RR--------- 39
           ++     A +       +   I  N+ N D   Y               RR         
Sbjct: 1   MVRGIYTAASGMMAQRHRLDVISNNLANIDLAGYKKDLSVHKAFPEMLIRRLNDDGLYKL 60

Query: 40  -------DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V          +     L    + +             E    
Sbjct: 61  PKGYLETAPVVGKLGTGVEENEI---YTSFEQGPLKITGNPLDLALT-------DEGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                              E          +         +      T   ++       
Sbjct: 111 VQTPEGERYTRNGSFTLGPEGMLVTKDGYPVIGEKGHIYLKDNNFKITDQGQIFHNTTFE 170

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
           +    L       + +   + N  I     +
Sbjct: 171 ENPKRLVSEYENSWENYELLDNLKIVNFEKT 201


>gi|326792665|ref|YP_004310486.1| flagellar hook-basal body protein [Clostridium lentocellum DSM
           5427]
 gi|326543429|gb|ADZ85288.1| flagellar hook-basal body protein [Clostridium lentocellum DSM
           5427]
          Length = 271

 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 9/219 (4%)

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           +     +          ++AL   RD    I Q   +E    L+G+          SE  
Sbjct: 53  NDPNAQTAPTVKQVGHGVRALANSRDYTNGILQETGNESDLALVGNGFFAIGQTDGSEVY 112

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                       D      ++               +        +   +   +    ++
Sbjct: 113 TRDGSFRFAMIPDEGSYALVTADGHPVLSTEGESIVV------GTEIPMDKLEIGQDGNI 166

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF-NHIS 433
                     +     +        L     N   + E   S      +    +    I 
Sbjct: 167 YYLDETGLEMDVAQIRIVQFANRAGLEAVGDNL--YKETPASGEPLAEVDDDGLTKTTIR 224

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             Y     V + +E+  LI  +++Y I++  I   D ML
Sbjct: 225 TGYLEGSNVQIAQEMVNLIIAQRAYEINSTAIKAADDML 263



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/122 (8%), Positives = 24/122 (19%), Gaps = 13/122 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54
           ++     A +          +I  N+ N +   Y +  T                     
Sbjct: 1   MIRALYTAASGMTAQQLNVDTISNNMANVNTAAYKKETTNFKSLLYTTMGEANDPNAQTA 60

Query: 55  ----QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRD 109
               Q               +  + +         +     A    + S         R 
Sbjct: 61  PTVKQVGHGVRALANSRDYTNGILQETGNESDLALVGNGFFAIGQTDGSEVYTRDGSFRF 120

Query: 110 SL 111
           ++
Sbjct: 121 AM 122


>gi|320179222|gb|EFW54180.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905]
          Length = 54

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +++    A+   +        I  N+ N     + R+  +    
Sbjct: 1  MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44


>gi|332524834|ref|ZP_08401025.1| flagellar basal body rod protein [Rubrivivax benzoatilyticus JA2]
 gi|332108134|gb|EGJ09358.1| flagellar basal body rod protein [Rubrivivax benzoatilyticus JA2]
          Length = 164

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQR 56
           + + +  N A  +      N+ N+  + + R+      + P  VTV   +
Sbjct: 71  SASLSGLNAAQTRLDVAGHNVANSLTEGFRRQVAQPATAQPVGVTVSIAQ 120


>gi|330501139|ref|YP_004378008.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01]
 gi|328915425|gb|AEB56256.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01]
          Length = 261

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/185 (5%), Positives = 42/185 (22%), Gaps = 27/185 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           + +    ++       +  +++  N+ N +   +     +                    
Sbjct: 1   MSSALWVSKTGLAAQDKAMSAVANNLANVNTNGFKSDRVVFEDLFYAIELQPGAQADEVN 60

Query: 45  ISPENVTVVTQRSENKN---MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             P  + + +            +  +      +    +   F  ++          +   
Sbjct: 61  TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGAGFFQVE------APNGDIYY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
               +L+ + E    N     L   +   A        +       +  D       +I+
Sbjct: 115 TENGQLQLNAEGMIVNSQGLPLTPAIEVPAGSSRFTVGSDGIVTAVLAGDTLPSELGQIT 174

Query: 162 NLRRF 166
            +   
Sbjct: 175 LVNFT 179



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/181 (8%), Positives = 42/181 (23%), Gaps = 2/181 (1%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
             +V      +      +   +   F      + D    +     +       ++     
Sbjct: 77  TQKVFTEGSIQTTGQPMDLAIIGAGFFQVEAPNGDIYYTENGQLQLNAEGMIVNSQGLPL 136

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                           +          D+         +        L     N   + E
Sbjct: 137 TPAIEVPAGSSRFTVGSDGIVTAVLAGDTLPSELGQITLVNFTNPGGLEALGGNL--YRE 194

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S      +       ++ +       V + E +  +I ++++Y  + K++     M 
Sbjct: 195 TVASGEPVEGVPGADGLGNLKQGVLEGSNVQVVEAMVAMISIQRAYEANAKVLDAASGMQ 254

Query: 473 Q 473
           Q
Sbjct: 255 Q 255


>gi|116328474|ref|YP_798194.1| endoflagellar distal basal body rod protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331206|ref|YP_800924.1| endoflagellar distal basal body rod protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121218|gb|ABJ79261.1| Endoflagellar distal basal body rod protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124895|gb|ABJ76166.1| Endoflagellar distal basal body rod protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 287

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            I + Y     V++  E+  +I+V +SY  + K +   D +L  L+ 
Sbjct: 237 SILQGYLEASNVSVVTEMVEMIEVNRSYEANQKTVQTQDSLLGKLIN 283



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/189 (7%), Positives = 26/189 (13%), Gaps = 28/189 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVT-- 51
           +L       N       +   I  N+ N D   + R  T+    P         + V   
Sbjct: 1   MLRGMYTGANGMIIQQTRMDVISNNLANVDKTAFKRDTTVFKTFPELLLHRFDEDGVGKV 60

Query: 52  ----------------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                                          +    +      L            +   
Sbjct: 61  PMGSFDTAPVVGKLGLGGEVNEVYTRFEQGAVKKTENPFDI-MLQDRPGNEHPAFFSVMT 119

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                             Y        L                    EV       +  
Sbjct: 120 NRGERLSRSGAFVMDTNGYLVTPQGFPLMGENGPIRVARGNFLIKENGEVWINGEIGNDP 179

Query: 156 IELEISNLR 164
                 +  
Sbjct: 180 RNGTSLDKN 188


>gi|217032455|ref|ZP_03437948.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128]
 gi|298736140|ref|YP_003728665.1| flagellar hook protein FlgE [Helicobacter pylori B8]
 gi|216945863|gb|EEC24483.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128]
 gi|298355329|emb|CBI66201.1| flagellar hook protein FlgE [Helicobacter pylori B8]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNKPIDAITNRKLNVSIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +                ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|205375363|ref|ZP_03228153.1| flagellar hook-basal body complex protein [Bacillus coahuilensis
           m4-4]
          Length = 279

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 74/264 (28%), Gaps = 9/264 (3%)

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
             L        N +        +  + + +       N  + + +     L     + + 
Sbjct: 17  QHLDVISHNVANVDTNGYKAQNARFSEMLVQQFDNQKNPANEIGRLTPNGLRLGVGAGIG 76

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             Q    + A    G   +                    +   ++        +  +   
Sbjct: 77  QIQMNTSQGALQSTGRSLDFILQNQTHYFKVLNQSGGQSEVNYSRSGAFYLSPLNDDTAM 136

Query: 345 RSNPSF--LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
            ++ +   + +          +  +     + +        +  I   V  I     L  
Sbjct: 137 LTDANGNPILNSDDQPITIPGDATSFYPDQNGVLVVETPRGQERIELGVVSIQKPQFLES 196

Query: 403 YARNSIG------WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
              N +G       L+ + +        +      + + +     V+L +EL+ +I V++
Sbjct: 197 KGGNLVGLPTNFNQLDVDANTILTDLNGANRAEISVKQGFIEKSNVDLSKELTDMINVQR 256

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
           SY    + I   D+M+  L+ G++
Sbjct: 257 SYQFQARTISMADQMMG-LVNGIR 279



 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +  + N A N      Q    I  N+ N D   Y  ++   +  
Sbjct: 1  MNRIMNVATNTMAQLQQHLDVISHNVANVDTNGYKAQNARFSEM 44


>gi|308183061|ref|YP_003927188.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4]
 gi|308065246|gb|ADO07138.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/410 (10%), Positives = 123/410 (30%), Gaps = 18/410 (4%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNVSIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+     +   
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLE-----IANP 315

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           SE     ++     D +   +DG  L + + RD    K+  Y+   +      D  ++ S
Sbjct: 316 SETPITFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQS 375

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
                       +    R +     ++ + +       +    + +  +S          
Sbjct: 376 EYYMTNSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPM 435

Query: 322 GIKDLDNKLCQGISETICVNPQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
            +    NKL   + ++   +    S  +   L        + ++    +     +   + 
Sbjct: 436 TLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFS 495

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFN 430
           +   +      +     +  L +   N     E   +  +             + ++ F 
Sbjct: 496 NGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFG 555

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            I   Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 556 KIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|188527733|ref|YP_001910420.1| flagellar hook protein FlgE [Helicobacter pylori Shi470]
 gi|188143973|gb|ACD48390.1| flagellar hook protein FlgE [Helicobacter pylori Shi470]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 38/179 (21%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                           +      +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKNGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|220924578|ref|YP_002499880.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans
           ORS 2060]
 gi|219949185|gb|ACL59577.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans
           ORS 2060]
          Length = 263

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 8/220 (3%)

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
           +   ++    ++ A L +   V      ++     +     +    I G       L   
Sbjct: 51  AGSATSDQGNQLPAGLALGSGVKTTSTARVMSQGTLSSTEKTYDIAIRGEGFFQITLPDG 110

Query: 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
                 D          I     Y  NPS      +       +    A  P        
Sbjct: 111 RTAYTRDGSFDLDSQGQIVTRDGYLINPSITVPNNATGVTISASGMVQATVPGQTAP--- 167

Query: 381 SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
              +N     +A     V L     N     E   S            F ++ +SY    
Sbjct: 168 ---QNLGQIQLARFVNKVGLESIGDNLFT--ETLASGPAITGNPGAEGFGNLQQSYLEEA 222

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E+S LI  +++Y +++K++   D+ML T  +  +
Sbjct: 223 NVNAVTEISSLIAAQRAYEMNSKVVTAADQMLSTTSQMFR 262



 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 8/41 (19%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A             I  NI N     Y R+       
Sbjct: 3  ALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQAHFQDL 43


>gi|160939652|ref|ZP_02087000.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437443|gb|EDP15207.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC
           BAA-613]
          Length = 246

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/175 (8%), Positives = 32/175 (18%), Gaps = 22/175 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           + + F  A +      +       NI N     Y  +  + T                  
Sbjct: 1   MFSGFYTAASGMLMNQRSLNMAANNIANVKTSGYKPKRLVKTTFDQQLVREMNGRTEGLG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           +  T+     E        +                    +        N          
Sbjct: 61  QGSTISVGTREMTTHGQGPIEDTGKTYDLAING-------DGFFVIQGENGQYLTRNGHF 113

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
               E          L         +       +   +      A  +I++ + +
Sbjct: 114 TRDDEGNLMLPGVGQLMGDGGPVYVDEEGFRVGADGIIYDNEDGALDQIQIVVPD 168



 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 46/184 (25%), Gaps = 10/184 (5%)

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            +              +      +A           +            R +   L   G
Sbjct: 66  SVGTREMTTHGQGPIEDTGKTYDLAINGDGFFVIQGENGQYLTRNGHFTRDDEGNLMLPG 125

Query: 356 SVSKKFLWNVK--NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                        +  G+    +          +      +  N   LE+  N       
Sbjct: 126 VGQLMGDGGPVYVDEEGFRVGADGIIYDNEDGALDQIQIVVPDNYDSLEFYDN-----GT 180

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             + +         V+  + +      GVNL  E++  ++V++++    K +   D+M Q
Sbjct: 181 YGAGAGVEL---SQVYPTVYQGKLEQSGVNLNNEMTRAMEVQRAFQSCGKALTIIDQMNQ 237

Query: 474 TLLE 477
               
Sbjct: 238 KTAN 241


>gi|108563315|ref|YP_627631.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1]
 gi|107837088|gb|ABF84957.1| flagellar hook protein [Helicobacter pylori HPAG1]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKENGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +                ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|317182208|dbj|BAJ59992.1| flagellar hook protein FlgE [Helicobacter pylori F57]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            + Y        +    +   ++   N      +++K+  +    +++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179

Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 +  LS    ++  +  K   K     FL+ +  ++++      I+ +  ++N+ 
Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEP 239

Query: 218 VVYTSD 223
           +   ++
Sbjct: 240 IDAITN 245



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKEDGKKEDL 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++   E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLFKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLNANEMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|317012717|gb|ADU83325.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 57.0 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDL 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +                ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|308184693|ref|YP_003928826.1| flagellar hook protein FlgE [Helicobacter pylori SJM180]
 gi|308060613|gb|ADO02509.1| flagellar hook protein FlgE [Helicobacter pylori SJM180]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +                ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|297570292|ref|YP_003691636.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926207|gb|ADH87017.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 244

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 54/212 (25%), Gaps = 8/212 (3%)

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN-KLCQGI 334
             + +     ++        +L  + +E+  +                   +   L    
Sbjct: 28  NNLANVDTAGYKKDAVSFWEMLYQANAERQRVGKALRVHTDHQQGHVDPTGNPLDLAIQG 87

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                +        +            L   +      D      D  N     D    +
Sbjct: 88  EGFFRIQTDQGIRYTRAGSFQLDPMGQLRTPEGGLVLGDGGPIVVDGNNFAVERDGRVMV 147

Query: 395 NTNV-------TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
           +           + +            R  +    M  + +   + + +     VN  EE
Sbjct: 148 DGVQVNQLEVVGVNDLTNLIKEGRNLFRLAAEGEEMPLEAMNFQVRQGFLEKSNVNSVEE 207

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++ +I +++SY    K+I   D M +  +  V
Sbjct: 208 MTTMIDLQRSYEAQQKMIQAIDDMDEQAISRV 239



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/197 (6%), Positives = 38/197 (19%), Gaps = 2/197 (1%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
                ++   +  N+ N D   Y +                 R                 
Sbjct: 16  MLAQERRLDQVANNLANVDTAGYKKDAVSFWEMLYQANAE--RQRVGKALRVHTDHQQGH 73

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +             E                   +       +     ++         +
Sbjct: 74  VDPTGNPLDLAIQGEGFFRIQTDQGIRYTRAGSFQLDPMGQLRTPEGGLVLGDGGPIVVD 133

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                      V       ++   + +++L   + E   +            +A +F  +
Sbjct: 134 GNNFAVERDGRVMVDGVQVNQLEVVGVNDLTNLIKEGRNLFRLAAEGEEMPLEAMNFQVR 193

Query: 194 RDVLLQKISEIIGISTI 210
           +  L +     +   T 
Sbjct: 194 QGFLEKSNVNSVEEMTT 210


>gi|317177697|dbj|BAJ55486.1| flagellar hook protein FlgE [Helicobacter pylori F16]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            + Y        +    +   ++   N      +++K+  +    +++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179

Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 +  LS    ++  +  K   K     FL+ +  ++++      I+ +  ++N+ 
Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEP 239

Query: 218 VVYTSD 223
           +   ++
Sbjct: 240 IDAITN 245



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKAPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|254779511|ref|YP_003057617.1| flagellar hook protein FlgE [Helicobacter pylori B38]
 gi|254001423|emb|CAX29418.1| Flagellar hook protein FlgE [Helicobacter pylori B38]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 IFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLPYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|92116936|ref|YP_576665.1| flagellar basal body rod protein FlgG [Nitrobacter hamburgensis
           X14]
 gi|91799830|gb|ABE62205.1| Flagellar basal-body rod FlgG [Nitrobacter hamburgensis X14]
          Length = 262

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 49/181 (27%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S         + +          I+  D         T  ++ Q R   +          
Sbjct: 82  SQGTLSQTGNDLDIAIRGEGFFKIQMPDGTYQYTRDGTFQMDNQGRIVNAQGNPVQPTIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +          ++          +   +                  + E   S   
Sbjct: 142 IPQNSAGITINAQGQVSVTLPGQTTPTVLGQIGLTRFVNKAGLQPVGDNNFTETPASGPP 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              + +   +  + +S      V +  E+S LI  +++Y ++ K+I   D+MLQ+     
Sbjct: 202 QDGIANIDGYGDMQQSSLEQANVEVVSEISDLIAAQRAYEMNAKVISAADQMLQSASALF 261

Query: 480 K 480
           +
Sbjct: 262 R 262



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 42/234 (17%), Gaps = 38/234 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44
               A             I  NI N     Y ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASDQGTIL 62

Query: 45  ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGIDLGGGVKTVGTPRL---MSQGTLSQTGNDLDIAIRGEGFFKIQ------MPDGTYQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                  +   +    N   + +        ++A   +      +  +            
Sbjct: 114 YTRDGTFQMDNQGRIVNAQGNPVQPTITIPQNSAGITINAQGQVSVTLPGQTTPTVLGQI 173

Query: 158 LEISNLR-RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                +    L  +   N      +    D    +D    + Q   E   +  +
Sbjct: 174 GLTRFVNKAGLQPVGDNNFTETPASGPPQDGIANIDGYGDMQQSSLEQANVEVV 227


>gi|210135099|ref|YP_002301538.1| flagellar hook protein FlgE [Helicobacter pylori P12]
 gi|210133067|gb|ACJ08058.1| flagellar hook protein [Helicobacter pylori P12]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +                ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|315586853|gb|ADU41234.1| flagellar hook protein [Helicobacter pylori 35A]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 64/246 (26%), Gaps = 26/246 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
           +            + Y        +    +   ++   N      +++K+  +    +++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQI 179

Query: 159 EISNLRR-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
                 +  LS    ++  +  K   K     FL+ +  ++++      I+ +  ++N+ 
Sbjct: 180 PQDLTYQPVLSTKVGISVNLNPKDHLKGAQDFFLNDKGEIIKERFLNQDINALANDDNEP 239

Query: 218 VVYTSD 223
           +   ++
Sbjct: 240 IDAITN 245



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|15645524|ref|NP_207700.1| flagellar hook protein FlgE [Helicobacter pylori 26695]
 gi|2314044|gb|AAD07954.1| flagellar hook (flgE) [Helicobacter pylori 26695]
          Length = 605

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 106/408 (25%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANNDNEPIDAITNRKLNISIQKEDGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +                ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|89095666|ref|ZP_01168560.1| FlhP [Bacillus sp. NRRL B-14911]
 gi|89089412|gb|EAR68519.1| FlhP [Bacillus sp. NRRL B-14911]
          Length = 274

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 20/281 (7%)

Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVV 259
           ++ + + I++    N D   Y     T  + + +    +  ++       N +      +
Sbjct: 14  QLQKQMDITSHNMANVDTTGYKRREATFTDLLVQQFANQPNSADENRLTPNGLRQGTGAM 73

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
            +     + +G IK   +  D+           + +   GS  +                
Sbjct: 74  LAQSQIVMAQGSIKTTDRQLDTAFTKENQLYKVLVQTETGSEVQYTRDGAFYLTPVSDTE 133

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
           +  +    N +       I +N Q            +         +   G   +     
Sbjct: 134 SMLVTSAGNAVLDENDNPIYINGQPGEFAITENGILTAKDSTGQEQEFSLGIVRVNKPQF 193

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
                  +    AG +    L +      G                      + +     
Sbjct: 194 LQQQGGNLLALAAGADGIDVLTDLTGALRGEAG-------------------VQQRALEQ 234

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             VN+Q+E++ LI V+++Y   ++ I   D+M+  L+ G++
Sbjct: 235 SNVNMQKEMTDLITVQRAYQFQSRAISMADQMMG-LVNGIR 274



 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +  +   A N      +Q      N+ N D   Y RR+   T  
Sbjct: 1  MSRMMITATNTLAQLQKQMDITSHNMANVDTTGYKRREATFTDL 44


>gi|83944162|ref|ZP_00956618.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36]
 gi|83845029|gb|EAP82910.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36]
          Length = 261

 Score = 58.1 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 25/148 (16%), Gaps = 34/148 (22%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI NA+   +                             
Sbjct: 3   ALGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGTAR 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V        N       L    + +      + +  +      +       
Sbjct: 63  PVGTDIGLGVQAAGVIRHN---IQGGLIQTENQLDLAIEGRGYFTV------NRPDGTQA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVI 128
                  + S E     L+   +   +I
Sbjct: 114 FTRDGNFQLSAEGQLVTLNGYEVEPAII 141



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                  A       L     N +       S     ++          + Y     VN+
Sbjct: 169 ELGQLNFATFLNEAGLKPVGDNLMEQ--TAASGEPVQNVPGTPGVGITRQGYLEQSNVNI 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            ++++ LI  +++Y +++K I   D+++ T  +  
Sbjct: 227 IQQITDLISAQRAYEMNSKAIETADQIMTTTNQIK 261


>gi|294084436|ref|YP_003551194.1| flagellar hook protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664009|gb|ADE39110.1| Flagellar hook protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 269

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 38/177 (21%), Gaps = 6/177 (3%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---TVVTQRSENKNMF 63
               ++    A+++   I  NI NA    + R                   Q  +     
Sbjct: 2   LAIIRSGIAAANKEIGVISNNIANASTNGFKRSSAQFQDIYGIAGEKRAAAQVGKGTVFD 61

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS---PTHYISKLRDSLESYSKNLSE 120
               +    A              E M      N            +R     +  N   
Sbjct: 62  ASRRNHAQGAFKTSGSELDLAVAGEGMFIVAPPNAGNELRYTRDGSMRLDENGFIVNNEG 121

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
             L           ++       +V          I ++      +   +T  N A+
Sbjct: 122 HFLIGLDGAPLRLPLRRNPAEDGDVAAEELLTSVSIGVDGQIKATYAGAMTRGNGAV 178



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 5/174 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
            G+            +  G  + +    L       +   +  NP    + +      SV
Sbjct: 96  AGNELRYTRDGSMRLDENGFIVNNEGHFLIGLDGAPLRLPLRRNPAEDGDVAAEELLTSV 155

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           S         +           +    N     +A       L         ++   ++ 
Sbjct: 156 SIGVDGQ---IKATYAGAMTRGNGAVINRGTIALARFQNEADLTSKGNGQ--FIMNAKTG 210

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              +   SQ  F  +         V + +EL+ +I+ +Q+Y+ S++++     +
Sbjct: 211 LPAVGAASQGNFGDVLSGNLEVSNVKINDELTSMIRAQQAYSASSRMLQADSDI 264


>gi|217034408|ref|ZP_03439822.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10]
 gi|216943139|gb|EEC22611.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 15/232 (6%)

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGL 317
             S++  S+    +     +++  +V     +               D      ++ P  
Sbjct: 380 TNSNDPTSSPTSKRKNQTWEVKSYIVDP---KNKAPINDPTWEIVGFDSATHKMKSAPMT 436

Query: 318 FIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINH 377
               G K          SE    +     +   L        + ++    +     +   
Sbjct: 437 LDFKGNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLA 493

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428
           + +   +      +     +  L +   N     E   +  +             + ++ 
Sbjct: 494 FSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLK 553

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           F  I   Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 554 FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|83955138|ref|ZP_00963794.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1]
 gi|83840467|gb|EAP79640.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1]
          Length = 261

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 25/148 (16%), Gaps = 34/148 (22%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
               A             I  NI NA+   +                             
Sbjct: 3   ALGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGTAR 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V        N       L    + +      + +  +      +       
Sbjct: 63  PVGTDIGLGVQAAGVIRHN---IQGGLIQTENQLDLAIEGRGYFTV------NRPDGTQA 113

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVI 128
                  + S E     L+   +   +I
Sbjct: 114 FTRDGNFQLSAEGQLVTLNGYEVEPAII 141



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
                  A       L     N +       S     ++          + Y     VN+
Sbjct: 169 ELGQLNFATFLNEAGLKPVGDNLMEQ--TAASGEPVQNVPGTPGVGITRQGYLEQSNVNI 226

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            ++++ LI  +++Y +++K I   D+++ T  +  
Sbjct: 227 IQQITDLISAQRAYEMNSKAIETADQIMTTTNQIK 261


>gi|24214555|ref|NP_712036.1| endoflagellar distal basal body rod protein [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45657887|ref|YP_001973.1| hook protein [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195518|gb|AAN49054.1| endoflagellar distal basal body rod protein [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45601128|gb|AAS70610.1| hook protein [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 287

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            + + Y     V++  E+  +I+V +SY  + K +   D +L  L+ 
Sbjct: 237 SVLQGYLEASNVSVVTEMVEMIEVNRSYEANQKTVQTQDSLLGKLIN 283



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/189 (7%), Positives = 28/189 (14%), Gaps = 28/189 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVT-- 51
           +L       N       +   I  N+ N D   + R  T+    P         + V   
Sbjct: 1   MLRGIYTGANGMIIQQTRMDVISNNLANVDKTAFKRDTTIFKTFPELLLHRFDEDGVGKV 60

Query: 52  ----------------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                                          +    +      L     +      +   
Sbjct: 61  PMGSFDTAPVIGKLGLGGEVNEVYTRFEQGAVKKTENPFDL-MLQDKPGSEHPAFFSVMT 119

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                             +        L                    EV       +  
Sbjct: 120 NRGERLSRSGAFVMDTNGFLVTPQGFPLLGENGPIRVARGNFLIKENGEVWINGEIGNDP 179

Query: 156 IELEISNLR 164
           +     +  
Sbjct: 180 VNGTSIDKN 188


>gi|297380105|gb|ADI34992.1| flagellar hook protein FlgE [Helicobacter pylori v225d]
 gi|308062226|gb|ADO04114.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20]
 gi|308063738|gb|ADO05625.1| flagellar hook protein FlgE [Helicobacter pylori Sat464]
 gi|317178740|dbj|BAJ56528.1| flagellar hook protein FlgE [Helicobacter pylori F30]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|148266117|ref|YP_001232823.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4]
 gi|146399617|gb|ABQ28250.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4]
          Length = 244

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 27/134 (20%), Gaps = 12/134 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           + +    A +    A Q+   I  N+ NA+   +            N    T  + N   
Sbjct: 1   MNSGLYAALSGSLAAMQRLEVISNNLANANTPGFKGDRLQFESVLANTKNPTLTAGNLTD 60

Query: 60  ------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +  F       +  + Q           +     +             +     
Sbjct: 61  LPVFSGEKFFTNY---SAGPLKQTGNTLDVALDGDGFFVVNTPQGKAYTRQGSFQRDASG 117

Query: 114 YSKNLSEDILGKTV 127
                    +    
Sbjct: 118 KLVTGDGYEVQGRG 131



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +        V    + + +     VN+  E++ +I+  + ++   K+I   D +
Sbjct: 180 ADPQVAPQAVTTASVKQGFLEDSNVNVVTEMARMIETSRYFDSCQKVIRSYDDV 233


>gi|114799186|ref|YP_758987.1| flagellar basal body rod protein FlgG [Hyphomonas neptunium ATCC
           15444]
 gi|114739360|gb|ABI77485.1| flagellar basal-body rod protein FlgG [Hyphomonas neptunium ATCC
           15444]
          Length = 261

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
            +      +        L     N   + E   S   +  +        + + Y     V
Sbjct: 167 GQAIGSISLVRFVNEKGLEAMGDNM--FRETEASGPANRLIPGTEGMGFLRQGYIEDSAV 224

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           ++ +E++ LI+ ++ Y +++K+I  +D+ML
Sbjct: 225 DVVKEIADLIEAQRGYELNSKVITASDEML 254



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 39/180 (21%), Gaps = 28/180 (15%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A +       +   I  NI N     Y  R    +                     
Sbjct: 3   SLQIAASGMAAQQMRVEVISNNIANMSTTAYRPRTAEFSDLMYQQYLTPGTITSQVGTVV 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  + + +       + ++    L    + +        F  +                 
Sbjct: 63  PSGIQLGSGVRPTTVSMDLTQGTLRETQAELDIAIDGNGFLEV------TLPSGEPAFTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             KL  S +          L   ++   +    + +     V     + + +    IS +
Sbjct: 117 DGKLSRSPDGEIVTSDGFPLADGIVIPEDARRISISRDGEVVAYFDNETEGQAIGSISLV 176


>gi|332673746|gb|AEE70563.1| flagellar hook [Helicobacter pylori 83]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|254994393|ref|ZP_05276583.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064]
          Length = 62

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               +  Q     IS S      V+L  E   L+  +  +  + K+I   D +++ ++  
Sbjct: 1   AVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNL 60

Query: 479 VK 480
           ++
Sbjct: 61  IQ 62


>gi|162147445|ref|YP_001601906.1| flagellar hook protein flgE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545555|ref|YP_002277784.1| hypothetical protein Gdia_3444 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786022|emb|CAP55604.1| putative flagellar hook protein flgE [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533232|gb|ACI53169.1| protein of unknown function DUF1078 domain protein
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 569

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/433 (9%), Positives = 103/433 (23%), Gaps = 11/433 (2%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN- 59
           MS+    + A +  +  S  F ++  NI N+    Y    T            +  S + 
Sbjct: 1   MSVFNALSTAVSGIDAQSTAFTNLSNNIANSQTVGYKAESTSFQDFVAGSLTSSTASSDI 60

Query: 60  ---KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-----L 111
                  D                 +       +          T   ++  ++      
Sbjct: 61  SDSVAAVDVQNVGAQGTASASTDTLAMAINGNGLFDVSEETGQATSGTTQFENTQYYTRN 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
             + +N    ++  T       +  +  +    + +I          E + + +  +  T
Sbjct: 121 GEFYENNEGYLVNTTGYYLDGYMADSNGSLGNTLTQINVANVSFRPTETTTITQSAAVGT 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
           + +D+  +   S   +       D    K++     S+       +  Y + GT    + 
Sbjct: 181 IPSDSTSYTAQSYSTSPVTTYDADGNASKVALTWTQSSTNPLVWTVSAYDAGGTGKVASN 240

Query: 232 PRDINFEKMNS--YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
             ++ F+          +     +       ++    +          IR  +  I    
Sbjct: 241 SFEVTFDSSGDLASVTGTSDGSSYTSSTSSGASVDPTITLTSNGVAQTIRLDLGTIGGTS 300

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
              MA     + +        S     +          +      + T   +    +  S
Sbjct: 301 GTTMAASSGTASASGVTSLSASGTALSMATTTLGTTTGSGQSYMTAPTDVNSVPVSAVWS 360

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 S     L +    +           + N               TL   +    G
Sbjct: 361 QTSANPSTWSVSLVDPYGGSDVSSDTYSVVFNSNGTAQTVTDTTTGATTTLSSLSATVNG 420

Query: 410 WLEKNRSDSHDLH 422
                 + +  L 
Sbjct: 421 KAYTLDASAASLS 433



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/126 (10%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
                   +    +     ++  + +   +      ++       L         +    
Sbjct: 445 SDSVTSGTYEGAEIESDGSVMAEFSNGDTQLIGKVALSTFANVDGLNAVTGQ--AYTATA 502

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            S +             +   Y  +   +L  +LS LI  +++Y+ + K++   D +LQ 
Sbjct: 503 ASGAAQTGTVGSNGTGTLEVGYVESSTTDLTSDLSALIVDQEAYSANTKVVTTADDLLQA 562

Query: 475 LLEGVK 480
            +   +
Sbjct: 563 TISMKQ 568


>gi|138894738|ref|YP_001125191.1| flagellar basal body rod protein FlgC [Geobacillus
          thermodenitrificans NG80-2]
 gi|196247641|ref|ZP_03146343.1| flagellar basal-body rod protein FlgC [Geobacillus sp. G11MC16]
 gi|134266251|gb|ABO66446.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans
          NG80-2]
 gi|196212425|gb|EDY07182.1| flagellar basal-body rod protein FlgC [Geobacillus sp. G11MC16]
          Length = 150

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 10/57 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISP 47
          MS+    N + +       +   I  NI N D             Y R+  +     
Sbjct: 1  MSMFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRG 57


>gi|307637597|gb|ADN80047.1| Flagellar hook protein [Helicobacter pylori 908]
 gi|325996190|gb|ADZ51595.1| Flagellar hook protein [Helicobacter pylori 2018]
 gi|325997786|gb|ADZ49994.1| Flagellar hook protein [Helicobacter pylori 2017]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 AFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|317180242|dbj|BAJ58028.1| flagellar hook protein FlgE [Helicobacter pylori F32]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKAPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|226321475|ref|ZP_03797002.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           Bol26]
 gi|226233271|gb|EEH32023.1| flagellar hook-basal body complex protein [Borrelia burgdorferi
           Bol26]
          Length = 282

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++   S           +   I         VN  +E+  +I++ ++Y  + K +   D
Sbjct: 212 WIDTKTSGKAQEIDI--SLRPKIETETLEASNVNAVKEMVLMIEINRAYEANQKTLQTED 269

Query: 470 KMLQTLLE 477
            +L  L+ 
Sbjct: 270 SLLGKLIN 277



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 27/150 (18%), Gaps = 34/150 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM------- 42
           ++     A +      ++  ++  N+ N D   Y +             R          
Sbjct: 1   MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60

Query: 43  ----TTISPENVTVVTQ---RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                  +P    + T               L    + +             +       
Sbjct: 61  PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALT-------DQGFFVIQT 113

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +              E      S   +  
Sbjct: 114 SDGERYTRNGSFTIGKEGILVTKSGFPVLG 143


>gi|15611911|ref|NP_223562.1| flagellar hook protein FlgE [Helicobacter pylori J99]
 gi|4155414|gb|AAD06422.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
           J99]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 AFSLSGGIADKLGLNANQMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|317014317|gb|ADU81753.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|261838284|gb|ACX98050.1| flagellar hook protein [Helicobacter pylori 51]
          Length = 605

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/179 (6%), Positives = 37/179 (20%), Gaps = 25/179 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +          S+  NI N +   Y   D           +    +++   
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS-SHLDALNAKSVVA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM------------------------SADDHYNN 98
            D+      S          +   +                                  +
Sbjct: 60  NDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQD 119

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +            + Y        +    +   ++   N      +++K+  +    ++
Sbjct: 120 NFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQ 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 222 SDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDS 281
           ++G  L + + RD    K+  Y+   +      D  ++ S            +    R +
Sbjct: 336 ANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKN 395

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                ++ + +       +    + +  +S           +    NKL   + ++   +
Sbjct: 396 QTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHD 455

Query: 342 PQYRS--NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
               S  +   L        + ++    +     +   + +   +      +     +  
Sbjct: 456 SSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQG 515

Query: 400 LLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHISESYSNTVGVNLQEELSF 450
           L +   N     E   +  +             + ++ F  I   Y  T  VN    L+ 
Sbjct: 516 LRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTN 575

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           LI +++ Y+++ +     D M++  +   K
Sbjct: 576 LILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|254476330|ref|ZP_05089716.1| flagellar basal-body rod protein FlgC [Ruegeria sp. R11]
 gi|214030573|gb|EEB71408.1| flagellar basal-body rod protein FlgC [Ruegeria sp. R11]
          Length = 130

 Score = 57.7 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS  A   + + +     S +   +  NI NAD   Y R+       
Sbjct: 1  MSEFAKSLSISASALQAQSTRLRHVSENISNADTPGYRRKTVPFEAV 47


>gi|302872713|ref|YP_003841349.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575572|gb|ADL43363.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 255

 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 6/143 (4%), Positives = 24/143 (16%), Gaps = 21/143 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       N+ N +   + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDITANNVANVNTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                            +    +       +        F A++  +  +          
Sbjct: 61  NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIE--VPGNQGAQQILYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKT 126
                 + +     L    +   
Sbjct: 119 NGAFTLNSQGELVTLDGFYVLGQ 141



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + Y     VN  +E+  +I V ++Y  + K     D+ LQ  + 
Sbjct: 203 GRIVQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFTIQDETLQKAVS 250


>gi|159045788|ref|YP_001534582.1| flagellar basal body rod protein FlgC [Dinoroseobacter shibae DFL
          12]
 gi|157913548|gb|ABV94981.1| flagellar basal-body rod protein FlgC [Dinoroseobacter shibae DFL
          12]
          Length = 130

 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          LL     + +     +Q+   + +NI N D   Y R+       
Sbjct: 4  LLKSMTVSASGLMAQAQRLNVVSQNIANVDTPGYQRKQAEFQQM 47


>gi|326404069|ref|YP_004284151.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum
           AIU301]
 gi|325050931|dbj|BAJ81269.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum
           AIU301]
          Length = 260

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 62/176 (35%), Gaps = 2/176 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           ++     +       +    +        +  +  +  N    +   ++   G       
Sbjct: 87  QQTNNTLDMAISGNGWFQVTLPSGQTAYTRDGTFGLSPNGTIVTADGYVVQPGIQIPTNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            NV   A     ++    +  +      +A    +  L     N   +L+   S +    
Sbjct: 147 TNVTINASGQVQVSLPGQTAPQTVGQLQLAVFPNDAGLAAQGGNL--FLQTAASGNPVTG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             S   F  + + +     VN+  E++ LI  +++Y+++++++  T++ML TL + 
Sbjct: 205 APSAPGFGTVMQGFVENSNVNVVSEVTDLITAQRAYDMNSQVVTATNQMLSTLTQL 260



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/260 (6%), Positives = 44/260 (16%), Gaps = 29/260 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------------- 46
             + A             I  NI N     Y  +                          
Sbjct: 3   ALDIAATGMQAQQTNVEVISNNIANMTTTGYKAQRVAFQDLLYQDLRRAGSNSSDAGTIV 62

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNS 99
                    V        ++      L   ++ +        +  +        +  + +
Sbjct: 63  PSGTQIGLGVKTAAIYRIDQQ---GNLQQTNNTLDMAISGNGWFQVTLPSGQTAYTRDGT 119

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                +    + + Y       I             Q   +   +         +     
Sbjct: 120 FGLSPNGTIVTADGYVVQPGIQIPTNATNVTINASGQVQVSLPGQTAPQTVGQLQLAVFP 179

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                        +  A      +   +            + S +  +S +         
Sbjct: 180 NDAGLAAQGGNLFLQTAASGNPVTGAPSAPGFGTVMQGFVENSNVNVVSEVTDLITAQRA 239

Query: 220 YTSDGTTLFETVPRDINFEK 239
           Y  +   +  T        +
Sbjct: 240 YDMNSQVVTATNQMLSTLTQ 259


>gi|99082800|ref|YP_614954.1| flagellar basal body rod protein FlgG [Ruegeria sp. TM1040]
 gi|99039080|gb|ABF65692.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040]
          Length = 261

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            ++G      L     N   + +   S   +           + + Y     V+   E++
Sbjct: 174 TLSGFTNPKGLEAMGGNL--FKQTEASGQPNTTEPGADGIGFLRQKYLEDSSVDAVREIT 231

Query: 450 FLIKVEQSYNISNKLIMFTDKML 472
            LI+ ++ Y +++K+I   D+M+
Sbjct: 232 ELIEAQRGYEMNSKVISAVDQMM 254



 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 26/140 (18%), Gaps = 28/140 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------S 46
               A    +    +  +I  N+ N +   Y  R                          
Sbjct: 3   ALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGTVL 62

Query: 47  PENVTVVTQRS---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
           P  V V         +  +    L    + +        +  +            +    
Sbjct: 63  PTGVQVGLGVRPAAVSVYLNQGALSQTGNELDLAIDGNGYFEV------TLPSGETAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDIL 123
               + S E          +
Sbjct: 117 DGSFKRSAEGLIVTNDGYPV 136


>gi|261420740|ref|YP_003254422.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61]
 gi|319768410|ref|YP_004133911.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52]
 gi|261377197|gb|ACX79940.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61]
 gi|317113276|gb|ADU95768.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52]
          Length = 273

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +       V+L EE+  L+   ++Y ++ + I  +++ML  L+ G++
Sbjct: 223 SVKQGALEQSNVDLGEEMVGLMATSRAYQLNARAISISEQMLG-LINGMR 271



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +L     A N  N   ++  +I  NI N++   + RR+        
Sbjct: 1  MLRSMLTAANTMNALQERLDTISHNIANSNTVGFKRREASFAELLT 46


>gi|163738064|ref|ZP_02145480.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis
          BS107]
 gi|163742540|ref|ZP_02149926.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis
          2.10]
 gi|161384125|gb|EDQ08508.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis
          2.10]
 gi|161388680|gb|EDQ13033.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis
          BS107]
          Length = 130

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS  +   + + +     + +   +  NI NAD   Y R+       
Sbjct: 1  MSEFSKSLSVSASALKAQASRLRHVSENISNADTPGYRRKTVPFEAV 47



 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +G +  +RSD   +   S  + +     +     V+L  E++   + ++SY  + K+   
Sbjct: 59  VGPVRLDRSDLEQVFDPSHPLAD--ESGHYEGSNVDLMIEIADAREAQRSYEANLKMFEQ 116

Query: 468 TDKMLQTLLEGVK 480
             +M  +L++ ++
Sbjct: 117 GRQMSSSLMDLLR 129


>gi|255099439|ref|ZP_05328416.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-63q42]
          Length = 253

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             N + L         +     +        N      NK      +         +   
Sbjct: 125 DDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNFISEG 184

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +   ++  + +    +          I + Y     V+LQEE   LI  ++++ +++K 
Sbjct: 185 DSL--FVATDAAQIKQVEKV------DIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKG 236

Query: 465 IMFTDKMLQ 473
           I   D+M Q
Sbjct: 237 IKTADEMWQ 245



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 41/171 (23%), Gaps = 12/171 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +F  ++   +    +   I  NI N+D+  Y + +   +                 +
Sbjct: 1   MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++  +  +             A                  ++   +      +      
Sbjct: 49  LNRPSYPTNGKDISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +    N + + +  + +   +              I +    +S    +
Sbjct: 109 YTRNGGFNVDALGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159


>gi|254973936|ref|ZP_05270408.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-66c26]
 gi|255091322|ref|ZP_05320800.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP
           107932]
 gi|255312980|ref|ZP_05354563.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-76w55]
 gi|255515739|ref|ZP_05383415.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-97b34]
 gi|255648833|ref|ZP_05395735.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-37x79]
 gi|260682050|ref|YP_003213335.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196]
 gi|260685648|ref|YP_003216781.1| flagellar basal body rod protein FlgG [Clostridium difficile
           R20291]
 gi|260208213|emb|CBA60571.1| putative flagellar basal-body rod protein [Clostridium difficile
           CD196]
 gi|260211664|emb|CBE01933.1| putative flagellar basal-body rod protein [Clostridium difficile
           R20291]
          Length = 253

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             N + L         +     +        N      NK      +         +   
Sbjct: 125 DDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNFISEG 184

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +   ++  + +    +          I + Y     V+LQEE   LI  ++++ +++K 
Sbjct: 185 DSL--FVATDAAQIKQVEKV------DIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKG 236

Query: 465 IMFTDKMLQ 473
           I   D+M Q
Sbjct: 237 IKTADEMWQ 245



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 42/171 (24%), Gaps = 12/171 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +F  ++   +    +   I  NI N+D+  Y + +   +                 +
Sbjct: 1   MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++  +  +             A   +              ++   +      +      
Sbjct: 49  LNRPSYPTNGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +    N + + +  + +   +              I +    +S    +
Sbjct: 109 YTRNGGFNIDGLGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159


>gi|297531534|ref|YP_003672809.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3]
 gi|297254786|gb|ADI28232.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3]
          Length = 273

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            + +       V+L EE+  L+   ++Y ++ + I  +++ML  L+ G++
Sbjct: 223 SVKQGALEQSNVDLGEEMVGLMATSRAYQLNARAISISEQMLG-LINGMR 271



 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +L     A N  N   ++  +I  NI N++   + RR+        
Sbjct: 1  MLRSMLTAANTMNALQERLDTISHNIANSNTVGFKRREASFAELLT 46


>gi|254466614|ref|ZP_05080025.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium
          Y4I]
 gi|206687522|gb|EDZ48004.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium
          Y4I]
          Length = 130

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS  +   +   +     + +   +  NI NAD   Y R+       
Sbjct: 1  MSEFSKALSVTASGLKAQAARLRHVSENISNADTPGYRRKAVPFESV 47



 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
            G +  +RS+   ++  S  + +     +     V+L  E++   + ++SY  + K+   
Sbjct: 59  TGRVTLDRSELEKVYDPSHPLAD--ESGHFEGSNVDLMIEIADAREAQRSYEANLKMFEQ 116

Query: 468 TDKMLQTLLEGVK 480
           T  M  +L+E ++
Sbjct: 117 TRSMSASLMELLR 129


>gi|208434813|ref|YP_002266479.1| flagellar hook protein [Helicobacter pylori G27]
 gi|208432742|gb|ACI27613.1| flagellar hook protein [Helicobacter pylori G27]
          Length = 605

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 29/181 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR------------------RDTMTT 44
           +      A +          S+  NI N +   Y                    +  +T 
Sbjct: 1   MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVTN 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN------- 97
                VT       N    D                + +  +    + +   N       
Sbjct: 61  DRNYGVTGSGNVLSN---KDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKK 117

Query: 98  -NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
            ++            + Y        +    +   ++   N      +++K+  +    +
Sbjct: 118 QDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPL 177

Query: 157 E 157
           +
Sbjct: 178 Q 178



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 107/408 (26%), Gaps = 14/408 (3%)

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                 +    +D        ++++  ++L +      + I  + +  + ++        
Sbjct: 203 DHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNVSIQKENGKKEDF 262

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                      ++     + +L++ L E T ++  +             L+  +     I
Sbjct: 263 VFTYGDAEKGENQ--FKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
           +  +      +   +            ++V   I +            +   +      +
Sbjct: 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMT 380

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N          K   Q  +    I   +               D      ++ P      
Sbjct: 381 NSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFK 440

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G K          SE    +     +   L        + ++    +     +   + + 
Sbjct: 441 GNKL---TYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNG 497

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVVFNHI 432
             +      +     +  L +   N     E   +  +             + ++ F  I
Sbjct: 498 VVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKI 557

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y  T  VN    L+ LI +++ Y+++ +     D M++  +   K
Sbjct: 558 RHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605


>gi|307718427|ref|YP_003873959.1| flagellar hook-basal body complex protein [Spirochaeta thermophila
           DSM 6192]
 gi|306532152|gb|ADN01686.1| flagellar hook-basal body complex protein [Spirochaeta thermophila
           DSM 6192]
          Length = 280

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + + +     VN   E+  +I+V ++Y  + K I   D +L  L+ 
Sbjct: 230 VRQGFLEGSNVNPVTEMVQMIEVNRAYEANQKTIETQDTLLGRLIN 275



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          ++  +    +   +   +  +I  N+ N D   Y R   +    PE    +  R  N   
Sbjct: 1  MIRGYYIGASGMASQLNRMDAIANNLANVDLTGYKRDTAIFKAFPE----LLIRRMNDRY 56

Query: 63 F 63
          F
Sbjct: 57 F 57


>gi|168186142|ref|ZP_02620777.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str.
           Eklund]
 gi|169295678|gb|EDS77811.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str.
           Eklund]
          Length = 259

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 62/257 (24%), Gaps = 22/257 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54
           ++     A +   N   Q   I  N+ NA    Y +        +D M     + V    
Sbjct: 1   MIRSIYTAVSGLINQEAQQDVISNNLANATTVGYKKDDLVGKSFKDVMMHNYDKVVRGKH 60

Query: 55  QRSENKNM-----FDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            +++   +      D+        A+        F    +          +         
Sbjct: 61  VKNDIGMLSMGCKLDQTYTNFTQGALQSTDKKTDFALQGKGFFTVSRGGRNFYTRDGHFH 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
                Y  N + D +    +              +  +  +   +   E+ + N   +  
Sbjct: 121 VDRGGYLVNSTGDKVIGKNLRTG---ATEPINVMQGGKPSKISCNDSGEMFVGNDLAYKV 177

Query: 169 ELTVVNDAIKFKT-----ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
           ++   N+            +  + +   +            I +   V +    +     
Sbjct: 178 QVVDFNNYEALSKEGDNLYTGGNPNVIENTMVKQGYLEKSNINVMEAVSDMMMSMRNFES 237

Query: 224 GTTLFETVPRDINFEKM 240
              L +++   +     
Sbjct: 238 NQKLVQSLDETLGKTVN 254


>gi|58039417|ref|YP_191381.1| flagellar basal body rod protein FlgG [Gluconobacter oxydans 621H]
 gi|58001831|gb|AAW60725.1| Flagellar basal-body rod protein FlgG [Gluconobacter oxydans 621H]
          Length = 263

 Score = 57.3 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 2/176 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           E+   + +       +    +        +  + ++  N    +   +L           
Sbjct: 87  EQTSNSLDLAVQGRGYFQVQLPSGQLAYTRDGTFSMDNNGSLVTADGYLISPTITIPNNA 146

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            ++         +     +         +        L    +N         S    + 
Sbjct: 147 QSISVDQSGQVSVQIAGQNNTTLVGQLQLGIFTNENGLAAMGQNLFTQ--TTASGDAMMG 204

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               V +  I + Y     VN+  E++ LI  +++Y +++K+I  +D M++T+   
Sbjct: 205 NPEAVGYGSIMQGYVENSNVNVVTEITDLITAQRAYEMNSKVITASDDMMKTVTNL 260



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/269 (6%), Positives = 56/269 (20%), Gaps = 9/269 (3%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
             + A            +I  NI N     Y R                 R    +  D 
Sbjct: 3   ALDIAGTGMQAQQTNVETISNNIANMSTTGYKRSRAEFQDLIY----QNIRRVGASSSDT 58

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                + A     +  +         + +  +NS    ++              +    +
Sbjct: 59  GTTIPAGAQVGLGVKTAAIYRINDQGSLEQTSNSL--DLAVQGRGYFQVQLPSGQLAYTR 116

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
               + +            +       +    + +    +   ++   N+          
Sbjct: 117 DGTFSMDNNGSLVTADGYLISPTITIPNNAQSISVDQSGQVSVQIAGQNNTTLVGQL--- 173

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
               F ++  +     +     +               G+ +   V             +
Sbjct: 174 QLGIFTNENGLAAMGQNLFTQTTASGDAMMGNPEAVGYGSIMQGYVENSNVNVVTEITDL 233

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKA 274
            +      ++  V++++         +  
Sbjct: 234 ITAQRAYEMNSKVITASDDMMKTVTNLGG 262


>gi|160878401|ref|YP_001557369.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg]
 gi|160427067|gb|ABX40630.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg]
          Length = 257

 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 57/241 (23%), Gaps = 34/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++           N  ++   I  N+ N+    Y +                        
Sbjct: 1   MVRGLYTGWTGMENEQKRLDIISNNLANSATVGYKKEGVTNQSFDDVLTLKIRDESENFT 60

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V +        +     L    +          F  ++  +   D  +  
Sbjct: 61  DKRIGKMTLGVKLGEV---YTDYTQGSLRETGNTFDFAIEGSGFFKME--VLDKDGNSKE 115

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +     E Y  +++ + L           +Q    +++ V  ++ +   +   +
Sbjct: 116 RYTRAGQFLMDKEGYVVDVNGNHLMSE-----GGYLQVPTDASQIVIDLQGNVFAD-GAQ 169

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           +  L     E                D     D    + Q  +E   ++ +    N + +
Sbjct: 170 VDKLVVTDFENYDYLKKFGESMYEAVDGARVKDTAAGIRQGYTEQSNVNVVSEMVNMIAI 229

Query: 220 Y 220
            
Sbjct: 230 T 230



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           I + Y+    VN+  E+  +I + ++Y  + K++   D  L+     +
Sbjct: 207 IRQGYTEQSNVNVVSEMVNMIAITRAYEANQKVLQSIDGTLELAANSI 254


>gi|297543693|ref|YP_003675995.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841468|gb|ADH59984.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 251

 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 65/249 (26%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVV 53
           +L     A +     ++    +  N+ N +   Y R   +T+            +NV   
Sbjct: 1   MLRGLYAASSGMVTQTKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNVPPD 60

Query: 54  T----------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                        + + N  +      +  +        F  +          + S    
Sbjct: 61  GKIGKMDYGILIDTFHTNFEEGSFTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + E Y        +  +  D + + + N   + + V ++R       +      
Sbjct: 121 NDGYLVTQEGYIVQGENGPIELSQGDISVDEMGNIKNNGQLVDRLRIVDFDNYDGLRKEG 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                     N  +   T             + + + ++    IS +    ++  V  + 
Sbjct: 181 NNLFFIDNSANVQVIPATGRIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVVIAF 237

Query: 224 GTTLFETVP 232
             TL + V 
Sbjct: 238 DETLGKAVN 246



 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 70/253 (27%), Gaps = 8/253 (3%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            L                     +N   ++      +          +      D+V P 
Sbjct: 1   MLRGLYAASSGMVTQTKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNVPPD 60

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            +    +   ++    +  +  +    N    F  DG          G   T   +    
Sbjct: 61  GKIGKMDYGILIDTFHTNFEEGSFTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYA 404
           ++   +   G + +     ++   G   +        N   +    +   +    L +  
Sbjct: 121 NDGYLVTQEGYIVQGENGPIELSQGDISVDEMGNIKNNGQLVDRLRIVDFDNYDGLRKEG 180

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N         + ++   + +      I + +     VN  +E+  +I V ++Y  + K+
Sbjct: 181 NNLF----FIDNSANVQVIPAT---GRIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKV 233

Query: 465 IMFTDKMLQTLLE 477
           ++  D+ L   + 
Sbjct: 234 VIAFDETLGKAVN 246


>gi|269792758|ref|YP_003317662.1| hypothetical protein Taci_1148 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100393|gb|ACZ19380.1| protein of unknown function DUF1078 domain protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 263

 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 11/194 (5%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N L E A        E+     +       F        +    +          Q 
Sbjct: 76  SLANVLHETAMRTTMGALERTGAPLDLAIEGEGFFVVQDGAGNTFYTRSGHFQRNEQGQV 135

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            ++   L  G     +     + L G    +    ++     +        T   L    
Sbjct: 136 VTHEGMLLLGDGGPIEIGEGTQVLVGEDGQVFVDGEAVGTVRVVR----FQTPSRLRNVG 191

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           ++ +   E   S + +     ++        +     VN+ EE++ +I+  ++Y  + K 
Sbjct: 192 KSLLA--ETQESGAPEDVEAPKLAVG-----FLERSNVNVVEEMTKMIEANRAYEAAAKT 244

Query: 465 IMFTDKMLQTLLEG 478
           +   D++   L   
Sbjct: 245 VTIQDELSSRLSNS 258



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/133 (7%), Positives = 28/133 (21%), Gaps = 22/133 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +        +      +    +  N+ N D   +  R  +                    
Sbjct: 1   MFRGIYAGTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEELMDRIERSMDPVV 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSP 100
               +P     +   S    + +  +     A+ +           E      D   N+ 
Sbjct: 61  KEGFAPGGRIPIGVLSLANVLHETAMRTTMGALERTGAPLDLAIEGEGFFVVQDGAGNTF 120

Query: 101 THYISKLRDSLES 113
                  + + + 
Sbjct: 121 YTRSGHFQRNEQG 133


>gi|319650827|ref|ZP_08004964.1| FlhP protein [Bacillus sp. 2_A_57_CT2]
 gi|317397425|gb|EFV78126.1| FlhP protein [Bacillus sp. 2_A_57_CT2]
          Length = 275

 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 3/138 (2%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-PVAGINTNVTLLEY 403
             +   + D  + S       KN             +      F+  V  IN    L + 
Sbjct: 139 TGDGLPVLDENNNSIIINGQAKNFKVTETGSFLAETANGSIQEFNLGVVLINKPQFLEQK 198

Query: 404 ARNSIGWL-EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
             N +G     +    +     +      +++       V++ +E++ LI ++++Y   +
Sbjct: 199 GDNLLGLPDGVDGEGIYTELNGALRGQIGMAQGSLEQSNVDMSKEMTDLINLQRAYQFQS 258

Query: 463 KLIMFTDKMLQTLLEGVK 480
           + +   D+M+  L+ G++
Sbjct: 259 RSVSMADQMMG-LINGIR 275



 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +      A N      +Q   +  N+ N D   Y RR+   T  
Sbjct: 1  MNRTMITATNTLAQLQKQMDIVSHNVANIDTAGYKRREANFTDL 44


>gi|85715052|ref|ZP_01046037.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A]
 gi|85698249|gb|EAQ36121.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A]
          Length = 262

 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 42/234 (17%), Gaps = 38/234 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44
               A             I  NI N     Y ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASAQGTIL 62

Query: 45  ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  +              
Sbjct: 63  PVGIDLGGGVKTVGTPR---QMSQGTLSQTGNDLDIAIRGEGFFKIL------MPDGTFQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                  +   +    N   + +        ++A   + +    +  +            
Sbjct: 114 YTRDGTFQMDNQGRIVNAQGNPVQPTITIPQNSAGITINSQGQVSVTLPGQTTPTVLGQI 173

Query: 158 LEISNLR-RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                +    L  +   N      +    D    +D    + Q   E   +  +
Sbjct: 174 GLTRFINKAGLQPVGDNNFKETPASGPFQDGIANIDGFGDMQQSSLEQANVEVV 227



 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 48/181 (26%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           S         + +          I   D         T  ++ Q R   +          
Sbjct: 82  SQGTLSQTGNDLDIAIRGEGFFKILMPDGTFQYTRDGTFQMDNQGRIVNAQGNPVQPTIT 141

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
               +          ++          +   +                  + E   S   
Sbjct: 142 IPQNSAGITINSQGQVSVTLPGQTTPTVLGQIGLTRFINKAGLQPVGDNNFKETPASGPF 201

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              + +   F  + +S      V +  E+S LI  +++Y ++ K++   D+MLQ+     
Sbjct: 202 QDGIANIDGFGDMQQSSLEQANVEVVSEISDLIAAQRAYEMNAKVVSAADQMLQSASALF 261

Query: 480 K 480
           +
Sbjct: 262 R 262


>gi|296134368|ref|YP_003641615.1| flagellar basal-body rod protein FlgF [Thermincola sp. JR]
 gi|296032946|gb|ADG83714.1| flagellar basal-body rod protein FlgF [Thermincola potens JR]
          Length = 251

 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/255 (5%), Positives = 48/255 (18%), Gaps = 35/255 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     +       S +      N+ N +   Y +   +                    
Sbjct: 1   MIRGLYTSAAGMLAESARNDVAANNLANVNTTGYKKDAAVFKSFPEMLIQRMEKPDNPAQ 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V    + +       L   ++ +        +              
Sbjct: 61  LKPEKVGWLGTGVIVDEVITIH---TQGQLKETTNPLDMAISGDGY-------FVIQTPA 110

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                         E Y      + +                     +       D    
Sbjct: 111 GERYTRNGAFTLDSEGYLVTSEGNYVLGQRGRIRIGNNDIVVDKQGNISANGQVIDTLRI 170

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
           +  ++  R + +   +    +              +   +      +  I+ +     + 
Sbjct: 171 VSFNDPNRLVKQGDSLFAGGQPVAGFNGQIMQKALETSNVNPVQEMVDLITIMRAYEANQ 230

Query: 218 VVYTSDGTTLFETVP 232
            +  +   TL + + 
Sbjct: 231 KMIQAHDQTLGQAIN 245



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                     I +    T  VN  +E+  LI + ++Y  + K+I   D+ L   + 
Sbjct: 190 GQPVAGFNGQIMQKALETSNVNPVQEMVDLITIMRAYEANQKMIQAHDQTLGQAIN 245


>gi|222053731|ref|YP_002536093.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32]
 gi|221563020|gb|ACM18992.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32]
          Length = 244

 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/131 (7%), Positives = 28/131 (21%), Gaps = 6/131 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---N 59
           + +    A +    A ++   I  N+ NA+   +            +    +Q +    +
Sbjct: 1   MNSGLYAALSGNLAAMRRLDVISNNLANANTAGFKGDRLQFESVLASSKSQSQAAASPND 60

Query: 60  KNMFDKVLHAHS---SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +F   +         + Q           +     +             R        
Sbjct: 61  SPVFSSEIFFTDYSPGPLKQTGNTLDVALDGDGFFVVNTPQGRAYTRQGNFRMDSAGRLV 120

Query: 117 NLSEDILGKTV 127
                 +    
Sbjct: 121 TSEGYEVQGGG 131


>gi|332530688|ref|ZP_08406619.1| flagellar basal body rod protein [Hylemonella gracilis ATCC
          19624]
 gi|332039856|gb|EGI76251.1| flagellar basal body rod protein [Hylemonella gracilis ATCC
          19624]
          Length = 101

 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58
          + ++ +   +    A  +  S   N+ N +   + R+          +     +   R E
Sbjct: 2  MASLSSIGISGLQAAQLRLDSSAHNVANLNTPGFKRQTVTQQDAPNLAGTRTRLGKAREE 61

Query: 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
             +  +V+   S++   +  LQ+ +  ++M+ +    
Sbjct: 62 GVTLEGEVVEQMSASHAFKANLQTLKTQEDMLGSLLDT 99


>gi|254438850|ref|ZP_05052344.1| conserved domain protein [Octadecabacter antarcticus 307]
 gi|198254296|gb|EDY78610.1| conserved domain protein [Octadecabacter antarcticus 307]
          Length = 255

 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 67/255 (26%), Gaps = 8/255 (3%)

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            S+      T     +    +     + +       + V S   +    G+  +L++   
Sbjct: 7   VSNNVANAGTTAFRKSTANFSDLYTAASAESASRLSLGVGSVVETTRQSGEQGSLMERDG 66

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            +          ++    G       +    +    L     ++   N         +  
Sbjct: 67  VLNLALIGNGMFVSAASAGDAQPSQLLTFTRDGEFALDKNGVLRTSTNDFV------LGY 120

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +    +    L                +     +   Y            +        L
Sbjct: 121 DGLGGTELGQLEVPFQSVNGSTLTALEINASGVMRGTYGSEEPVILGQIAIGAFPNVTAL 180

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +       +     +    L +  Q  F  +      +  VNL  EL+ +I+ +Q ++ 
Sbjct: 181 RQL--GMGRFQATEEAGGLMLGVSGQDGFGKVQTGALESSNVNLTTELTSMIQAQQQFSG 238

Query: 461 SNKLIMFTDKMLQTL 475
           S++++     M++ L
Sbjct: 239 SSRILQAYSDMIEKL 253



 Score = 41.6 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 7/127 (5%), Positives = 24/127 (18%), Gaps = 11/127 (8%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS-----------ENKNMFDKVLHA 69
            + +  N+ NA    + +     +      +  +                ++     L  
Sbjct: 4   ISVVSNNVANAGTTAFRKSTANFSDLYTAASAESASRLSLGVGSVVETTRQSGEQGSLME 63

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
               +    +                          +         +  + D +      
Sbjct: 64  RDGVLNLALIGNGMFVSAASAGDAQPSQLLTFTRDGEFALDKNGVLRTSTNDFVLGYDGL 123

Query: 130 NAEEVVQ 136
              E+ Q
Sbjct: 124 GGTELGQ 130


>gi|170022971|ref|YP_001719476.1| flagellar basal body rod protein [Yersinia pseudotuberculosis
          YPIII]
 gi|169749505|gb|ACA67023.1| flagellar basal body rod protein [Yersinia pseudotuberculosis
          YPIII]
          Length = 102

 Score = 57.0 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----PENVTVVTQRSENK 60
           F+ A    N  ++Q  +I  NI N+  K +    T  +       P  V V        
Sbjct: 2  SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQSQPLGVAVSGVSQNIS 61

Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMS 91
             D         +        F  ++E   
Sbjct: 62 K--DGQKEKTGMGLDLAISGGGFFVVRESSG 90


>gi|126697841|ref|YP_001086738.1| flagellar basal body rod protein FlgG [Clostridium difficile 630]
 gi|255305297|ref|ZP_05349469.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC
           43255]
 gi|115249278|emb|CAJ67091.1| Flagellar basal body rod protein FlgG [Clostridium difficile]
          Length = 253

 Score = 57.0 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             N + L         +     +        N      NK      +         +   
Sbjct: 125 DDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNFISEG 184

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +   ++  + +    +          I + Y     V+LQEE   LI  ++++ +++K 
Sbjct: 185 DSL--FVATDAAQIKQVEKV------DIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKG 236

Query: 465 IMFTDKMLQ 473
           I   D+M Q
Sbjct: 237 IKTADEMWQ 245



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 41/171 (23%), Gaps = 12/171 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +F  ++   +    +   I  NI N+D+  Y + +   +                 +
Sbjct: 1   MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++  +  +             A                  ++   +      +      
Sbjct: 49  LNRPSYPTNGNDISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +    N + + +  + +   +              I +    +S    +
Sbjct: 109 YTRNGGFNVDALGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159


>gi|323341367|ref|ZP_08081611.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC
           25644]
 gi|323091244|gb|EFZ33872.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC
           25644]
          Length = 256

 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            +      +   F  I++       V++ + +S +I  +++Y +++K +  TD+MLQT+
Sbjct: 193 GNLISSANNNAGFGQINQGLVELSNVDVADTMSKMIITQRAYQMNSKALQSTDEMLQTI 251



 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 40/147 (27%), Gaps = 12/147 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---------T 51
           M++  + + +++  N    +   +  N+ N D   Y  + T       N           
Sbjct: 1   MNMSQILSISRSGLNAYQHEMDVVSNNLANVDTLGYKDKRTTFQELLNNGTNANEVGLSQ 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLR 108
                + N  +  + ++ + S    +    +++   +        D  NN         R
Sbjct: 61  NAGNVAINAGLNVQQVNENLSQGAFKSTAGTYDLAIDGEGYFGVRDGANNLYLTRDGSFR 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV 135
              +          +       + +  
Sbjct: 121 RDADGNLVTSKGMKVEVQSNVPSSQWP 147


>gi|56421866|ref|YP_149184.1| flagellar hook-basal body protein [Geobacillus kaustophilus
          HTA426]
 gi|56381708|dbj|BAD77616.1| flagellar hook-basal body protein [Geobacillus kaustophilus
          HTA426]
          Length = 273

 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +L     A N  N   Q+  +I  NI N++   + RR+        
Sbjct: 1  MLRSMLTAANTMNALQQRLDTISHNIANSNTVGFKRREASFAELLT 46



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
           ++    L     D      +   V  I     L     N         +           
Sbjct: 162 MSPTGTLTATNTDGRVVARVNLGVTMIRRPQLLEARGGNVYALPNVPGAAEELNGSLRGQ 221

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   + +       V+L EE+  L+   ++Y ++ + +  +++ML  L+ G++
Sbjct: 222 I--SVKQGALEQANVDLGEEMVGLMATSRAYQLNARAVSISEQMLG-LINGMR 271


>gi|315185553|gb|EFU19322.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578]
          Length = 269

 Score = 56.6 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + + +     VN   E+  +I+V ++Y  + K I   D +L  L+ 
Sbjct: 219 VRQGFLEGSNVNPVTEMVQMIEVNRAYEANQKTIETQDSLLGRLIN 264



 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 15 NNAS-QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
            +   +  +I  N+ N D   Y R   +    PE    +  R  N   F
Sbjct: 1  MASQLNRMDAIANNLANVDLTGYKRDTAIFKAFPE----LLIRRMNDKYF 46


>gi|222834410|gb|EEE72887.1| predicted protein [Populus trichocarpa]
          Length = 170

 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/153 (7%), Positives = 27/153 (17%), Gaps = 33/153 (21%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTIS------------------------PENVTVVTQR 56
              I  N+ N     + R   +                               V  V   
Sbjct: 1   MDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQTVLPSGMQIGTGVRPVATE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             +            +A     +   F  +            +        +        
Sbjct: 61  RIH---TQGNPQQTGNAKDVAIIGNGFFQV------TMPDGTTSYTRDGSFQVDQNGQLV 111

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
             S  ++   +   A      + +    + + R
Sbjct: 112 TSSGFVINPAITLPANYTSPRWASFNSPLSRTR 144


>gi|163744349|ref|ZP_02151709.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex
           HEL-45]
 gi|161381167|gb|EDQ05576.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex
           HEL-45]
          Length = 261

 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 9/152 (5%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSEN 59
             + A             I  NI NA+   +                          S  
Sbjct: 3   ALSIAATGMMAQQTNVDVISNNIANANTTGFKASRAAFQDLIYQSMQREGALTSEAGSTR 62

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE---SYSK 116
               D  +   ++   +        A +  ++         +  +     +     S+  
Sbjct: 63  PVGIDIGMGVQTAGTVRLNTQGGMVATENQLNVAIDGRGYFSVTLPDGNQAFTRDGSFQL 122

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
           +   +I+          +V   NT+A E+ + 
Sbjct: 123 SPEGEIVTMQGYRVEPGLVVPENTTAVEINEQ 154



 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           L    S    +          I + Y     VN+ ++++ LI  +++Y +++K I   D+
Sbjct: 193 LATEASGEAQVVNPGDPGAGMIRQGYLEASNVNVIQQITDLISAQRAYEMNSKSIETADQ 252

Query: 471 ML 472
           ML
Sbjct: 253 ML 254


>gi|300870897|ref|YP_003785768.1| flagellar hook-basal body complex protein FlhO [Brachyspira
           pilosicoli 95/1000]
 gi|300688596|gb|ADK31267.1| flagellar hook-basal body complex protein, FlhO [Brachyspira
           pilosicoli 95/1000]
          Length = 282

 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           W++ + S    +  K  V    +   +     VN   E+  +I+V+++Y +++K I   D
Sbjct: 211 WVDTDISGPAYIAQKG-VDRPKVLSRFLEMSNVNPINEMVRMIEVQRAYELNSKTISTHD 269

Query: 470 KMLQTLLE 477
            ++  ++ 
Sbjct: 270 TLIGRVVN 277



 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/185 (7%), Positives = 32/185 (17%), Gaps = 40/185 (21%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------------- 45
               +       +   +  N+ N D   + R                             
Sbjct: 6   YTGASGMIAEQYRLDVVANNLANVDKPGFKRDTATFKAFPEMMAARTEDDGVVIFPLGST 65

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V              L    + +      + F        A +  +
Sbjct: 66  DIRPYVGRLGTGVEVNEV---FTEWEQGSLRETGNQLDIALGDKGF-------FAVETPH 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                         ++Y        +         +           +   R   D E  
Sbjct: 116 GERYTRNGSFLIDKDNYLVTKHGYKVMGENGYIQIKSNNFNIDEEGRISINRRYQDNEDF 175

Query: 158 LEISN 162
           ++ ++
Sbjct: 176 VQFND 180


>gi|302390534|ref|YP_003826355.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani
           DSM 16646]
 gi|302201162|gb|ADL08732.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani
           DSM 16646]
          Length = 260

 Score = 56.6 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 6/152 (3%), Positives = 27/152 (17%), Gaps = 34/152 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +       +   I  N+ N +   + +   +                    
Sbjct: 1   MIRGLYTSASGMLAEMARTDVISNNLANINTTGFKKDRAVFRAFPEMNIHRYDDPQPVGA 60

Query: 46  ------------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93
                             +   R    +     +   S+ +      +   A +      
Sbjct: 61  GFVIDPVPYIGVLGTGAGLDEIRV---DFTQGRIEMTSNPLDLAI--EDTAAGETSFFEI 115

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
                           + + +        +  
Sbjct: 116 QTPAGIRYTRDGSFTINADGFLVTREGYYVMG 147



 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 40/188 (21%), Gaps = 11/188 (5%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
                LDE+         E      +              ++        +         
Sbjct: 74  GTGAGLDEIRVDFTQGRIEMTSNPLDLAIEDTAAGETSFFEIQTPAGIRYTRDGSFTINA 133

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                       + +    N++N +                     +A     ++L +  
Sbjct: 134 DGFLVTREGYYVMGENGPINLRNGSKVEINTEGEVYLDGLMVDRLRIAAFPAGLSLEKQG 193

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                         I +       VN   E+  LI   ++Y  + ++
Sbjct: 194 DNLY-----RAQGVPLPANA------RIIQGALERANVNAVSEMVNLISAFRAYEANQRM 242

Query: 465 IMFTDKML 472
           +   D  L
Sbjct: 243 VRAHDDTL 250


>gi|239907793|ref|YP_002954534.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus
           RS-1]
 gi|239797659|dbj|BAH76648.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus
           RS-1]
          Length = 261

 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/203 (8%), Positives = 38/203 (18%), Gaps = 22/203 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VV 53
           MS+ +    A +       +      N+ N +   Y R       +              
Sbjct: 3   MSMYSAVFGALS----TETRLNISANNLANVNTTGYKRDRVSFEDTFYRYAHDYHMDPRG 58

Query: 54  TQRS----------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTH 102
             R               +  + +     A+                        NS   
Sbjct: 59  DIRQKQLLPRADLIAKPRLAMQQIDFAQGALTATGNPLDLAIQGPGFFKVSAGQGNSYYT 118

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                  S E    N  +  +            +        V    A   +   + + N
Sbjct: 119 RNGAFHRSAEGMLVNDQDMPVLGGGGPIQLPEGRISVGGDGAVYVDGAQVGQVDVVTVQN 178

Query: 163 LRRFLSELTVVNDAIKFKTASKH 185
               +     +       T  + 
Sbjct: 179 PDALMKYGANLYMPQTGATVQEG 201



 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/166 (7%), Positives = 43/166 (25%), Gaps = 6/166 (3%)

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
              GN  ++                                  +            +   
Sbjct: 90  TATGNPLDLAIQGPGFFKVSAGQGNSYYTRNGAFHRSAEGMLVNDQDMPVLGGGGPIQLP 149

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
           +           Y D          V  +     L++Y  N        ++ +       
Sbjct: 150 EGRISVGGDGAVYVDG--AQVGQVDVVTVQNPDALMKYGANLY----MPQTGATVQEGVL 203

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +     +++ +     V + EE+  +I+ ++++    K++  ++++
Sbjct: 204 RAGTTEVAQGFLEKPNVEVVEEMVSMIETQRTFEAYQKVMSSSNEL 249


>gi|289577406|ref|YP_003476033.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus
           Ab9]
 gi|289527119|gb|ADD01471.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus
           Ab9]
          Length = 251

 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 63/249 (25%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVT----- 51
           +L     A +      +    +  N+ N +   Y R   +T+  P               
Sbjct: 1   MLRGLYAASSGMVTQIKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNIPPD 60

Query: 52  --------VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    +   + + N  +  L   +  +        F  +          + S    
Sbjct: 61  GKIGKMDYGILIDTFHTNFEEGSLTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + E Y        +     D + + + N   + + V ++R       +      
Sbjct: 121 NDGYLVTQEGYIVQGENGPIELLQGDISVDEMGNIINNGQLVDRLRIVDFDNYDGLRKEG 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                     N  +   T             + + + ++    IS +    ++  V  + 
Sbjct: 181 NNLFFIDNSANVQVIPATGRIKQGFLEQSNVNSVKEMVN---MISVMRNYESNQKVVIAF 237

Query: 224 GTTLFETVP 232
             TL + V 
Sbjct: 238 DETLGKAVN 246



 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + +     VN  +E+  +I V ++Y  + K+++  D+ L   + 
Sbjct: 199 GRIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVN 246


>gi|13472570|ref|NP_104137.1| flagellar basal body rod protein FlgF [Mesorhizobium loti
           MAFF303099]
 gi|17366619|sp|Q98HE3|FLGF_RHILO RecName: Full=Flagellar basal-body rod protein flgF
 gi|14023316|dbj|BAB49923.1| flagellar basal-body rod protein; FlgF [Mesorhizobium loti
           MAFF303099]
          Length = 241

 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 48/205 (23%), Gaps = 2/205 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  +I  N+ NA+   +                 +    +   
Sbjct: 1   MQDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDMVSGTGQKSVSFASSG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L     ++ +      F    +   A D    +      +   +      ++    
Sbjct: 60  -KTYLSGAHGSLSETGNPFDFAIQGDAWFAIDTPAGTVMTRDGRFSMNENGELMSIEGHP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        +   +N    A     +R +      + + N     + +   N  I     
Sbjct: 119 VLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGENFVRYGNSGIVPART 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207
            +               + S +  +
Sbjct: 179 PEPVTDRSDVGIAQGFVEESNVNPV 203


>gi|206890142|ref|YP_002249849.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742080|gb|ACI21137.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 239

 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 68/240 (28%), Gaps = 11/240 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD------TMTTISPENVTVVTQ- 55
           +           +    + ++I  N+ N +   Y ++        + +  P    V+ Q 
Sbjct: 1   MYKGIYITMTGMSMRENELSAISNNLANINTTGYKKQSFASRLYPLLSGKPSQSNVIYQD 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    + +     A+ Q           E        N              ++Y 
Sbjct: 61  ARAQTYFGTQYIDTSQGALKQTHNPFDLGIQGEGFFVVRQGNKILYTREGSFTRDKDNYL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
              +   +     +                  I  D +    +++  L         + +
Sbjct: 121 VTQTGLRVLDENNNPIIIDGTKIEYGKDG--TILVDGNPIGRIKLVKLNNLRHVGQSLYE 178

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            ++   A+      +++  +  +  +SE++ +   +RN +     T++ + L +    +I
Sbjct: 179 GVEAGQANGQILQGWIE--NSNVNPMSEMVQMIQAIRNFDFTQRVTTNFSELAQRAVSEI 236


>gi|258592561|emb|CBE68870.1| Flagellar basal body and hook proteins [NC10 bacterium 'Dutch
           sediment']
          Length = 245

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/137 (5%), Positives = 28/137 (20%), Gaps = 21/137 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTMTTISPE 48
           +++    A +       +  ++ +N+ N     +               +   +    PE
Sbjct: 1   MVSGLYTAASGLMAQMAKMEALSQNLANTGTPGFKGDLMVIEGGARGPLQSALLIEGRPE 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V       +    ++    + +        +                         
Sbjct: 61  GPQPVWIGRRVTDFGRGLIRETQNPLDLANSGPGY-------FVVQTPQGVRYTRAGNFA 113

Query: 109 DSLESYSKNLSEDILGK 125
              E + +      +  
Sbjct: 114 IDAEGHLETPDGSRVQG 130


>gi|158423059|ref|YP_001524351.1| putative flagellar basal body rod protein [Azorhizobium caulinodans
           ORS 571]
 gi|158329948|dbj|BAF87433.1| putative flagellar basal body rod protein [Azorhizobium caulinodans
           ORS 571]
          Length = 257

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/251 (9%), Positives = 65/251 (25%), Gaps = 15/251 (5%)

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           +  +   ++ +    V V++   +              ++        +    R  I S 
Sbjct: 10  ADVIGIGASGLRAQVVKVATVADNTANARTPGHRKVAAETTSAPAGAGVATGLRHYISSA 69

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                    ++ +        + D         S     + Q     +        +   
Sbjct: 70  GTASATGSPTDMMVSGDGFFMVSDGKGNTLLTRSGNFAFDAQSGQLKNAAGYALMATPNG 129

Query: 362 LWNVKNL------------AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                 +                 L +   D  ++     P+A       +   A +   
Sbjct: 130 GGAPTPVQLTAEQASSLKVGADGTLASTDADGRSQALYRIPLATTANPDGMTPVAGD--A 187

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           +   + S      +  Q     I   Y     V++  E++ L+  + S+  + + +    
Sbjct: 188 FQPGSASGPARTFVSGQGP-GTIRAGYLEDSNVDMATEMTDLVTSQASFMANFRTVRMGI 246

Query: 470 KMLQTLLEGVK 480
           +ML  +L   +
Sbjct: 247 EMLDVVLNMKR 257



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 50/239 (20%), Gaps = 8/239 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M+L  V     +       + A++  N  NA    + +    TT +P    V T      
Sbjct: 7   MALADVIGIGASGLRAQVVKVATVADNTANARTPGHRKVAAETTSAPAGAGVATGLRHY- 65

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE-SYSKNLS 119
                 + +  +A           +        D   N+            +    KN +
Sbjct: 66  ------ISSAGTASATGSPTDMMVSGDGFFMVSDGKGNTLLTRSGNFAFDAQSGQLKNAA 119

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L  T                    K+ AD            +               
Sbjct: 120 GYALMATPNGGGAPTPVQLTAEQASSLKVGADGTLASTDADGRSQALYRIPLATTANPDG 179

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            T    DA             +S     +       D  V  +   T   T        
Sbjct: 180 MTPVAGDAFQPGSASGPARTFVSGQGPGTIRAGYLEDSNVDMATEMTDLVTSQASFMAN 238


>gi|639926|gb|AAA61738.1| flagellar hook polypeptide [Borrelia burgdorferi]
          Length = 190

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 33/157 (21%), Gaps = 13/157 (8%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN-------------MFDKV 66
           +   +  NI N +   + +                 R  +               +    
Sbjct: 1   RMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARGGTNPKQVGLGMNVASID 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                 A    +                   N             + +  N +  +  + 
Sbjct: 61  TIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDVDSDRHLVNPANGMRIQG 120

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +    E  +  NT++     I    DKE      N+
Sbjct: 121 WMARDLEGEKVINTASDIEDLIIPIGDKEGAKSTKNV 157


>gi|260574405|ref|ZP_05842409.1| flagellar basal-body rod protein FlgC [Rhodobacter sp. SW2]
 gi|259023301|gb|EEW26593.1| flagellar basal-body rod protein FlgC [Rhodobacter sp. SW2]
          Length = 126

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSENK 60
          LL     A +     + +   +  NI NAD   Y R+      +     V     R +  
Sbjct: 4  LLQSLTMAASGMEAQAMRLRHVSENIANADTPGYHRKTMSFQEAMDGGTVEAGPVRLDRS 63

Query: 61 NMF 63
           + 
Sbjct: 64 ELV 66



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE---KNRSDSHDL 421
               +G                  D        ++  E              +RS+   +
Sbjct: 9   TMAASGMEAQAMRLRHVSENIANADTPGYHRKTMSFQEAMDGGTVEAGPVRLDRSELVKI 68

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +     + +     + +   V+L  E++   + ++SY  + K+     +M Q+L E ++
Sbjct: 69  YDPGHPLAD--ETGHYDGSNVDLVIEIADAREAQRSYEANLKMFDQARQMTQSLFELLR 125


>gi|255521215|ref|ZP_05388452.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J1-175]
          Length = 99

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%)

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             T   +    I  +  + S S           N +SES S+  GVN+ EE++ +++ + 
Sbjct: 17  GTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIMQYQS 76

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
            Y  + K +   + M++ LL  +
Sbjct: 77  YYVANTKAMNTVNDMMKALLAML 99


>gi|288870655|ref|ZP_06114865.2| flagellar hook-associated protein 1 [Clostridium hathewayi DSM
           13479]
 gi|288866364|gb|EFC98662.1| flagellar hook-associated protein 1 [Clostridium hathewayi DSM
           13479]
          Length = 170

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 17/169 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------------PEN 49
               A+       +    I  NI N + K Y R+   T                    + 
Sbjct: 2   GLETAKRGLMVNQKALDIIGNNISNINTKGYTRQRLDTVSVQVYGSDRFQYSSIPLAGQG 61

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLR 108
           V             D       S +G      +     E + +D +         ++ L 
Sbjct: 62  VDARGVSQIRNPYLDTKFREQYSDVGYFDQKAAIMEQMEGILSDPEVEGTGIKDALTVLS 121

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
            +L  +S++  ++     V++  + V Q  N     ++ +      ++ 
Sbjct: 122 QALADFSQHPYQETNANIVLNAFKGVTQVLNEYDTNLKSLEEQTKNDLS 170


>gi|94263288|ref|ZP_01287104.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94267693|ref|ZP_01290962.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94272297|ref|ZP_01292100.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93450173|gb|EAT01484.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451895|gb|EAT02626.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456371|gb|EAT06495.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 243

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/195 (9%), Positives = 42/195 (21%), Gaps = 4/195 (2%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
                ++   +  N+ N D   Y R++T       NVT    R         +       
Sbjct: 16  MLGQERRLDQVANNLANVDTAGYKRQNTAFWEMLYNVTAD--RQRIGKGSHTLTDHQQGN 73

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           + Q           E                           +  +  ++         +
Sbjct: 74  VQQTDNPLDLAINGEGFFRIQTDQGVRYTRAGNFELDPLGQLRMPNGGLVLGDGGPVVID 133

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                     + Q  +       +L+I  +      L    + +        +      Q
Sbjct: 134 EAGGEVAIDPQGQIHQNQV-MIGQLDIVTVNDLT-TLAKEGENLFRLEDDGEEMAALDFQ 191

Query: 194 RDVLLQKISEIIGIS 208
                 + S +  I 
Sbjct: 192 VRQGYVEKSNVNSIE 206



 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 58/212 (27%), Gaps = 8/212 (3%)

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA-GNSENVPGLFIADGIKDLDNKLCQGI 334
             + +     ++ Q      +L    +++  I  G+              D    L    
Sbjct: 28  NNLANVDTAGYKRQNTAFWEMLYNVTADRQRIGKGSHTLTDHQQGNVQQTDNPLDLAING 87

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                +        +   +        L          D      D        DP   I
Sbjct: 88  EGFFRIQTDQGVRYTRAGNFELDPLGQLRMPNGGLVLGDGGPVVIDEAGGEVAIDPQGQI 147

Query: 395 NTNVTLLEYARNS-IGWLEKNRSDSHDL------HMKSQVVFNHISESYSNTVGVNLQEE 447
           + N  ++       +  L     +  +L        +   +   + + Y     VN  EE
Sbjct: 148 HQNQVMIGQLDIVTVNDLTTLAKEGENLFRLEDDGEEMAALDFQVRQGYVEKSNVNSIEE 207

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++ +I + ++Y    K+I   D+M    +  V
Sbjct: 208 MTAMIDLYRNYEAQQKMIQGIDEMDDLAISRV 239


>gi|312126817|ref|YP_003991691.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776836|gb|ADQ06322.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 147

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 15/91 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          M +    N + +       +   I +NI NA+         Y R+  +            
Sbjct: 1  MGMFDAINISSSALTAQRVRMDVIAQNIANANTTKTENGQPYRRKVVVFEE--------- 51

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85
          +R     +  + +    ++      +++   
Sbjct: 52 RRQSFAEILSQKIGQAQASSYGGVRVKAILE 82


>gi|75675314|ref|YP_317735.1| flagellar basal body rod protein FlgG [Nitrobacter winogradskyi
           Nb-255]
 gi|74420184|gb|ABA04383.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi
           Nb-255]
          Length = 262

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 53/211 (25%)

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
           G   +       V       +  +      S         + +          I+  D  
Sbjct: 52  GAQASTQGTIMPVGIDLGGGVKTVGTPRQMSQGTLSQTGNDLDIAIRGEGFFKIQMPDGT 111

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                  T  ++   R   +              +          ++          +  
Sbjct: 112 FQYTRDGTFQMDNMGRIVNAQGNPVQPTITIPQNSAGITINAQGQVSVTLPGQTTPTVLG 171

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
            +                  + E   S      + +   F  + +S      V +  E+S
Sbjct: 172 QIGLTRFINKAGLQPVGDNNFKETPASGPFQDGIANLDGFGDMQQSNLEQANVEVVSEIS 231

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            LI  +++Y ++ K+I   D+MLQ+     +
Sbjct: 232 DLIAAQRAYEMNAKVISAADQMLQSAAALFR 262



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 41/234 (17%), Gaps = 38/234 (16%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------------- 44
               A             I  NI N     Y ++                          
Sbjct: 3   ALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASTQGTIM 62

Query: 45  ----ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                    V  V        M    L    + +      + F  ++             
Sbjct: 63  PVGIDLGGGVKTVGTPR---QMSQGTLSQTGNDLDIAIRGEGFFKIQ------MPDGTFQ 113

Query: 101 THYISKLRDSLESYSKNLSEDILG---KTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                  +        N   + +        ++A   +      +  +            
Sbjct: 114 YTRDGTFQMDNMGRIVNAQGNPVQPTITIPQNSAGITINAQGQVSVTLPGQTTPTVLGQI 173

Query: 158 LEISNLR-RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                +    L  +   N      +    D    LD    + Q   E   +  +
Sbjct: 174 GLTRFINKAGLQPVGDNNFKETPASGPFQDGIANLDGFGDMQQSNLEQANVEVV 227


>gi|310644366|ref|YP_003949125.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2]
 gi|309249317|gb|ADO58884.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2]
          Length = 275

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 47/167 (28%), Gaps = 4/167 (2%)

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                +          I D ++     ++     +    ++       GS          
Sbjct: 106 QGNGQKAWTRDGGFHFIPDPNDNETMMLTTAEGYSVLDNNDIPVTAPAGSKVAINSDGEL 165

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +                  +  P      +  L     N +   +   +      + + 
Sbjct: 166 LIRANGTGAPTVGQRIKLMDVQRPEGLQQRDDNLF-VLANGVTEADVFGAAGVAGAVPTD 224

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           V    +   Y     VNL  E++ +++V++ Y ++ + +  +D M+ 
Sbjct: 225 V---SVRSGYLEESNVNLAGEMTDMMQVQRMYQMAARALTSSDTMMN 268



 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 36/158 (22%), Gaps = 7/158 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A     +  Q+   I  NI N +   Y  +         NV     +  +  +
Sbjct: 1   MNNSMIGAMVSMASVQQRLDLIADNIANVNTVGYKSKQGSFEDVLANVQ----QQPSTYL 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +         +G      +     E               ++   ++L     N  +  
Sbjct: 57  QNGRAMPLGYNLGYGVKTTAIMKNME---QGPLKETGLPTDLAIQGNALFEIQGNGQKAW 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                     +   N        +      + +I +  
Sbjct: 114 TRDGGFHFIPDPNDNETMMLTTAEGYSVLDNNDIPVTA 151


>gi|223038370|ref|ZP_03608664.1| flagellar basal-body rod protein FlgG (Distal rod protein)
           [Campylobacter rectus RM3267]
 gi|222880227|gb|EEF15314.1| flagellar basal-body rod protein FlgG (Distal rod protein)
           [Campylobacter rectus RM3267]
          Length = 41

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              V+L   L+ LI V++ +  ++K I  +D+ML TLL+  
Sbjct: 1   MSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTLLQLK 41


>gi|218135322|ref|ZP_03464126.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990707|gb|EEC56718.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC
           43243]
          Length = 276

 Score = 56.2 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 65/260 (25%), Gaps = 3/260 (1%)

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                             +       +   T  +    +    + +   +A  + K    
Sbjct: 10  WTAASGMTAQQTNVDTIANNLANVNTTGYKTESAEFKTLLYQNLQTKTTTANGENKPVNA 69

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                +      +   +   +   +             V G           N     + 
Sbjct: 70  QVGLGTRNSSITSHYTQGQFLDSDNTFSFAINGDGFFGVMGDDGNTYYTRNGNFFISPLQ 129

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
           +   +      N   L   G+           +    D    Y D            G+ 
Sbjct: 130 DGSMMLCTSDGNA-VLNSEGAPITFNNMEANKITVDADGQFMYPDDTGNPAAIGIQFGLY 188

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMK--SQVVFNHISESYSNTVGVNLQEELSFLIK 453
                    + S G L    +    L+         + + + Y     VN+  E+  LI 
Sbjct: 189 QFTNPSGLDKTSGGLLAATDASGDALNESVDQVTKKSQLKQGYLEGSNVNVATEMVNLIT 248

Query: 454 VEQSYNISNKLIMFTDKMLQ 473
            +++Y +++K I  +D+MLQ
Sbjct: 249 AQRAYELNSKAINASDEMLQ 268



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 47/215 (21%), Gaps = 11/215 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVT 51
           ++     A +          +I  N+ N +   Y                  T +     
Sbjct: 5   MMRSLWTAASGMTAQQTNVDTIANNLANVNTTGYKTESAEFKTLLYQNLQTKTTTANGEN 64

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                       +  + +H +         +F              +    Y ++  +  
Sbjct: 65  KPVNAQVGLGTRNSSITSHYTQGQFLDSDNTFSFAINGDGFFGVMGDDGNTYYTRNGNFF 124

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
            S  ++ S  +                  +  E  KI  DAD +              + 
Sbjct: 125 ISPLQDGSMMLCTSDGNAVLNSEGAPITFNNMEANKITVDADGQFMYPDDTGNPAAIGIQ 184

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
                    +     +   L   D     ++E + 
Sbjct: 185 FGLYQFTNPSGLDKTSGGLLAATDASGDALNESVD 219


>gi|260466625|ref|ZP_05812813.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum
           WSM2075]
 gi|259029631|gb|EEW30919.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum
           WSM2075]
          Length = 240

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 47/205 (22%), Gaps = 2/205 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  +I  N+ NA+   +                 +    +   
Sbjct: 1   MRDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDVVSGTGQKSVSFASSG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L      + +      F    +   A D           +   +      ++    
Sbjct: 60  -KTYLSGAHGPLNETGNPFDFAIQGDAWFAIDTPAGPVMTRDGRFSMNENGELMSIEGHP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        +   +N    A     +R +      + + N    ++ +   N  I     
Sbjct: 119 VLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGVNFVRYGNSGIVPART 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207
            +               + S +  +
Sbjct: 179 PEPVTDRSDVGIAQGFVEESNVNPV 203


>gi|147678401|ref|YP_001212616.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum
           SI]
 gi|146274498|dbj|BAF60247.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum
           SI]
          Length = 256

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +            F  I + Y  T  V+L  E++ LI+ +  Y  + + +   D+M
Sbjct: 190 EEAGEAIPGTPGSEGFGVIRQGYLETSNVDLTGEITGLIEAQTVYGFNARSVRIVDEM 247



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 27/150 (18%), Gaps = 30/150 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L   + A    N    +  +I  ++ N     Y R  T                     
Sbjct: 1   MLKALSSAVTGLNAQRTRVDAIAVDLANIAAAGYKRNRTRFAELVSQEIEKQGIPVAAEG 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
               +   V   +    +K +                  + +  +               
Sbjct: 61  RPARAGSGVRAES---ADKVLLAGETVKTERPFDLLIEGEGYFRVV------LPGGEEVY 111

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA 131
                     E      S   L    +   
Sbjct: 112 TRNGCFTYDKEGNLYCSSGYRLEGVSLPEG 141


>gi|226944490|ref|YP_002799563.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ]
 gi|226719417|gb|ACO78588.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ]
          Length = 135

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MS+  +F+ A +  +  SQ+      N+ N D+        Y  +  +        +   
Sbjct: 1  MSMFNIFDIAGSALSAQSQRMNVTASNLANVDSVGSEDGQAYRAKQVLFESMARGRSDTG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVVQVVED 70



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
           E+  +I   +SY  + +++  + +ML
Sbjct: 101 EMVNMIAASRSYQANVEVMNTSKQML 126


>gi|266621944|ref|ZP_06114879.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM
           13479]
 gi|288866378|gb|EFC98676.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM
           13479]
          Length = 246

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 35/183 (19%), Gaps = 22/183 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---------------TTISP 47
           + + F  A +      +       NI N     Y  +  +               TT   
Sbjct: 1   MFSGFYTAASGVLMNQRALNISANNIANVKTSGYRSKRLVKTTFDEQLVRQMNGQTTAIG 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
              T+     E        L                    + +      +          
Sbjct: 61  GGSTISLAEREMTTHRQGALVDTGKNFDMAISG-------DGLFVIQGEDRQYLTRNGHF 113

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
               + Y        +         E           +        ++I++ + +    L
Sbjct: 114 TQDEDGYLVLKGVGQVMGDGGPIQVEEGGFRVGENGIIYDNENGELEQIQIVVPDNYDNL 173

Query: 168 SEL 170
           +  
Sbjct: 174 TFY 176



 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 25/51 (49%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +    V+  + +      GVNL  E++  ++V++++   ++ +   D+M
Sbjct: 185 NGVALTQVYPEVFQGKLEESGVNLNSEMTRAMEVQRAFQSCSRALTIIDQM 235


>gi|289804814|ref|ZP_06535443.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 65

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +++    A+   +        I  N+ N     + R+  +    
Sbjct: 1  MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL 44


>gi|206603526|gb|EDZ40006.1| Putative flagellar basal body rod protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 267

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 26/142 (18%), Gaps = 32/142 (22%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------- 45
            +      Q    +  N+ N +   + R                                
Sbjct: 9   VSGAQAQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPGFRMTPWGE 68

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  + ++V        +         +  + +      + F  +          N 
Sbjct: 69  FPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDIAIKGEGFFRILTPRGEVLSRNG 128

Query: 99  SPTHYISKLRDSLESYSKNLSE 120
             T        + E Y     +
Sbjct: 129 RFTLDRGGRLVTHEGYGVLGED 150


>gi|261409668|ref|YP_003245909.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10]
 gi|261286131|gb|ACX68102.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10]
          Length = 275

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
          +      A    N   Q+   I  N+ N +   Y +++         V  
Sbjct: 1  MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQG 50



 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +   + +   +     VNL +EL+ +++V+++Y ++ + +  +D M+  L   ++
Sbjct: 218 APGEPPKSKVLSGFVEQSNVNLTDELTKMMEVQRAYQLTARALSSSDTMMN-LANTMR 274


>gi|289548727|ref|YP_003473715.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484]
 gi|289182344|gb|ADC89588.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484]
          Length = 241

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 9/115 (7%)

Query: 12  NICNNASQQFASIVRNIENADNKNYVR----RDTMTTISPENVTVVTQRSENKNMFDKVL 67
           +    + ++   I  N+ N    ++ R           +P +V  V  R    N    V+
Sbjct: 13  SGMMLSQRKLEVITNNMANVSTPSFKRDVMLASVWQAPTPLSVPSVDPRLPQNNFLYPVV 72

Query: 68  HA-----HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                      +             +   A    N          R   + Y  N
Sbjct: 73  GGIYTDLRQGGLRHTGNSTDLAIDGDGFFAVSSGNEVLYTRKGNFRLDKDGYLVN 127


>gi|257457889|ref|ZP_05623048.1| flagellar basal-body rod protein FlgC [Treponema vincentii ATCC
          35580]
 gi|257444602|gb|EEV19686.1| flagellar basal-body rod protein FlgC [Treponema vincentii ATCC
          35580]
          Length = 151

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 17/81 (20%), Gaps = 25/81 (30%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-----NY-VRRDTMTTI--------- 45
          M + +  N A    +    +   I  NI NA         Y  R   +            
Sbjct: 1  MGIFSSINIAATGMSAERLRTDVISDNIANASTTSSQEGGYFRRSRVILAQKNDGIDWRL 60

Query: 46 ----------SPENVTVVTQR 56
                        V V    
Sbjct: 61 PFVPSDMDRGVGTGVRVTGIE 81



 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E+  LI   +SY  +  ++  + +M Q  LE  +
Sbjct: 104 KAGYVEYPNVNIVTEMVDLISASRSYEANAAVVQGSKEMFQRALEIGR 151


>gi|304407726|ref|ZP_07389377.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343209|gb|EFM09052.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 270

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 52/217 (23%), Gaps = 1/217 (0%)

Query: 257 VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
                   +    G++  +   +   V +   + D     L  + +  D     +     
Sbjct: 46  TNAKQQPSAFKEPGRMSPMNYTQGWGVRLATIEPDLSQGPLQQTGNTLDIAIEGNALYEV 105

Query: 317 LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                     +                       + +          +   +     +  
Sbjct: 106 RTPDGTAYTRNGSFQLSPLANGSSVLATSDGNLLMGENDQPIVVPANHTIRVDADGTVQA 165

Query: 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL-EKNRSDSHDLHMKSQVVFNHISES 435
              D          +        L   A N        N  D              + + 
Sbjct: 166 VAGDGSASPVGKLKLLQATRPSLLTTVADNLYAVAEGVNVEDVLRTVSAGADSKVSLRQG 225

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           Y     V++  E++ LI V+++Y +S + +  +D M+
Sbjct: 226 YVEQSNVDMTSEMTDLINVQRAYQLSARALTSSDSMM 262



 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 15/49 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
          +      A    N   Q+   +  NI N +   Y R+D        N  
Sbjct: 1  MNGSMINAMVSMNGLQQKLDILADNIANLNTVGYKRKDASFEDLLTNAK 49


>gi|218516400|ref|ZP_03513240.1| flagellar hook protein FlgE [Rhizobium etli 8C-3]
          Length = 126

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 14/34 (41%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
                A +  +  + + +++  NI +A+   Y 
Sbjct: 29 FGSMKTAVSGMSAQANRLSTVSDNIADANTVGYK 62


>gi|1448943|gb|AAB04619.1| flagellar basal body distal rod protein [Borrelia burgdorferi]
          Length = 152

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 10/33 (30%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          M L +  N A         +   I  NI N   
Sbjct: 1  MGLFSSINVASTGLTAQRLRIDVISNNIANVST 33



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VNL EE+  +I   ++Y  ++ +I  +  M ++ L  ++
Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQ 151


>gi|310659047|ref|YP_003936768.1| flagellar component of cell-proximal portion of basal-body rod
          [Clostridium sticklandii DSM 519]
 gi|308825825|emb|CBH21863.1| flagellar component of cell-proximal portion of basal-body rod
          [Clostridium sticklandii]
          Length = 146

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
          MS+ +  N + +       +   I +N+ NA+         Y R+  + 
Sbjct: 1  MSIFSSINISASALTAERTRMDVISKNLANANTTRTQSGDPYRRQVVVF 49



 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + Y     V+   E+  +I   +SY  +   +  +  ML
Sbjct: 99  EKGYVTMSNVDTITEMVDMISATRSYEANVTALNTSKSML 138


>gi|213621056|ref|ZP_03373839.1| flagellar hook-associated protein FlgK [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
          Length = 78

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
          + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1  MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53 VTQRSENKNMFDKVLHAH 70
             + E        L   
Sbjct: 61 SGVQREYDAFITNQLRGA 78


>gi|45656202|ref|YP_000288.1| flagellar basal body rod protein FlgC [Leptospira interrogans
          serovar Copenhageni str. Fiocruz L1-130]
 gi|45599436|gb|AAS68925.1| flagellar basal-body rod protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 155

 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44
          M L +  N +    +    +   I  NI N+    +      + R   + T
Sbjct: 3  MGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMT 53



 Score = 44.3 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN+  E++ +I   +SY  + ++I  +  M    LE  +
Sbjct: 109 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGR 154


>gi|116327145|ref|YP_796865.1| flagellar basal body rod protein FlgC [Leptospira borgpetersenii
          serovar Hardjo-bovis L550]
 gi|116332198|ref|YP_801916.1| flagellar basal body rod protein FlgC [Leptospira borgpetersenii
          serovar Hardjo-bovis JB197]
 gi|116119889|gb|ABJ77932.1| Endoflagellar proximal basal body rod protein [Leptospira
          borgpetersenii serovar Hardjo-bovis L550]
 gi|116125887|gb|ABJ77158.1| Endoflagellar proximal basal body rod protein [Leptospira
          borgpetersenii serovar Hardjo-bovis JB197]
          Length = 153

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44
          M L +  N +    +    +   I  NI N+    +      + R   + T
Sbjct: 1  MGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMT 51



 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN+  E++ +I   +SY  + ++I  +  M    LE  +
Sbjct: 107 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGR 152


>gi|118443708|ref|YP_877999.1| flagellar basal body rod protein FlgG [Clostridium novyi NT]
 gi|118134164|gb|ABK61208.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT]
          Length = 266

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 55/262 (20%), Gaps = 25/262 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMT----------- 43
           ++     A +   N   Q   I  N+ NA    Y +        +D M            
Sbjct: 1   MIRSIYTAVSGLINQEAQQDVISNNLANATTVGYKKDNLVGKSFKDVMMHNYDKVVGGKH 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                              N    VL +   +       + F  +    S       +  
Sbjct: 61  VKNDIGMLSMGSKLDQSYTNFTQGVLESTDKSTDFALQGRGFF-VVSRNSRVAGGGQNFY 119

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S D +    +                  KI  +   E+ L+ S
Sbjct: 120 TRDGHFHVERTGYLVNSSGDRVMGQNMRTGAMEPIYLGNERTGPSKISCNDRGELFLDGS 179

Query: 162 ---NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               +     +             S  +   +              + +   V +    +
Sbjct: 180 LKYKINVVDFDNYETLRKQGDNLYSGGNPRAYNGAIVKQNYLEKSNVNVMEEVSDMMMTM 239

Query: 219 VYTSDGTTLFETVPRDINFEKM 240
                   L +++   +     
Sbjct: 240 RNFESNQKLVQSLDETLGKTVN 261



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 24/46 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++Y     VN+ EE+S ++   +++  + KL+   D+ L   + 
Sbjct: 216 VKQNYLEKSNVNVMEEVSDMMMTMRNFESNQKLVQSLDETLGKTVN 261


>gi|313610100|gb|EFR85425.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           F2-208]
          Length = 92

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%)

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
             T   +    I  +  + S S           N +SES S+  GVN+ EE++ +++ + 
Sbjct: 10  GTTFPSFMDGIITEVATDASKSSATSTADTQALNSLSESKSSLEGVNIDEEMTNIMQYQS 69

Query: 457 SYNISNKLIMFTDKMLQTLLEGV 479
            Y  + K +   + M++ LL  +
Sbjct: 70  YYVANTKAMNTVNDMMKALLAML 92


>gi|239628978|ref|ZP_04672009.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519124|gb|EEQ58990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 246

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/176 (6%), Positives = 35/176 (19%), Gaps = 8/176 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54
           + + F  A +      +       NI N     Y  +  + T                + 
Sbjct: 1   MFSGFYTAASGMLMNQRSLDMAANNIANVKTSGYKPKRLVKTTFNEQLVRQMNGQTQGLG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           Q S       ++     + +             +        +          +   E  
Sbjct: 61  QGSTISIGTREMTTHGQAPVVDTGQTYDLAINGDGFFVIQGTDGQYLTRNGHFKRDEEGN 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                   +         +       +   +         +I++   +    L+  
Sbjct: 121 LILPGVGQVMGDGGPVYVDESGFRVGADGIIYDNEDGELDQIQIVEPDDYDNLTFY 176



 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            + +      GVNL  E++  ++V++++    K +   D+M Q    
Sbjct: 195 TVYQGKLEQSGVNLNNEMTRAMEVQRAFQSCGKALTIIDQMNQKTAN 241


>gi|312792645|ref|YP_004025568.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312179785|gb|ADQ39955.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 147

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 14/81 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          M +    N + +       +   I +NI NA+         Y R+  +            
Sbjct: 1  MGMFDAINISSSALAAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEER-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIG 75
          ++S    +  K+  A SS+ G
Sbjct: 53 KQSFADILTQKIGQAQSSSYG 73


>gi|329928721|ref|ZP_08282570.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp.
          HGF5]
 gi|328937502|gb|EGG33920.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp.
          HGF5]
          Length = 275

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
          +      A    N   Q+   I  N+ N +   Y +++         V  
Sbjct: 1  MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQG 50



 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +   + +   +     VNL +EL+ +++V+++Y ++ + +  +D M+  L   ++
Sbjct: 218 APGEPPKSKVLSGFVEQSNVNLTDELTKMMEVQRAYQLTARALSSSDTMMN-LANTMR 274


>gi|224417700|ref|ZP_03655706.1| flagellar basal-body rod protein FlgG [Helicobacter canadensis MIT
           98-5491]
 gi|253827049|ref|ZP_04869934.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT
           98-5491]
 gi|313141243|ref|ZP_07803436.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT
           98-5491]
 gi|253510455|gb|EES89114.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT
           98-5491]
 gi|313130274|gb|EFR47891.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT
           98-5491]
          Length = 277

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/274 (8%), Positives = 69/274 (25%), Gaps = 26/274 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   +  +         +   I  NI NA+   + R D +                    
Sbjct: 1   MQGGYYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIKDQ 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                   N ++       +   D    +               + +      +      
Sbjct: 61  TKDAAKFYNRSLNRVPQIVEEFTD---RSVGGITQTDNTFDFALSRENAYFMIETPEGIR 117

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    + E    N     +       + + ++  +    EV K     ++ +  E 
Sbjct: 118 FTRDGSFVLNQEGRLVNKEGYAVLPREYIESPQYIEIIDGFQIEVDKDGNLYNRSLNNEE 177

Query: 161 SNLRRFLSELTVV-NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            N     + + VV  +  KF      + + + ++R   ++ +     +       +++ V
Sbjct: 178 LNETILTANIAVVSFENPKFLQKIGDNLYKYPNERMNEMEVLERSGAVRQGYLEKSNINV 237

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
                  +      +   + + ++     +  I 
Sbjct: 238 VYEMTGLIETNRLVEAYSKVLKTHMDDLNTEAIT 271


>gi|15895408|ref|NP_348757.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum
           ATCC 824]
 gi|15025131|gb|AAK80097.1|AE007715_2 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC
           824]
 gi|325509554|gb|ADZ21190.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum
           EA 2018]
          Length = 256

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 39/176 (22%), Gaps = 12/176 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------PENVTVVT 54
           +L +     +      ++  SI  N+ N+    Y       +             VT   
Sbjct: 1   MLRIMWNGVSGMAAEQEKLDSISNNLANSSTTGYKSETVGFSDLLYETLNRKGYPVTNDD 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL----KEMMSADDHYNNSPTHYISKLRDS 110
                 +         ++A G      S  AL                           +
Sbjct: 61  NNRYTGSGVKANEWIRNNAQGSLTPSDSKTALAIDGSGYFKVTTPDGTEAYERAGSFTVN 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                 + + + L      +   V    +  A       +  + +    +  +  +
Sbjct: 121 ANGRIVDPNGNYLNIDYSVDPSTVKFTASNVAVAQDGTISIQNGQTTTNVGKINIY 176



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 72/245 (29%), Gaps = 9/245 (3%)

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
           +     + + T+      +    +     +                        +   A+
Sbjct: 21  SISNNLANSSTTGYKSETVGFSDLLYETLNRKGYPVTNDDNNRYTGSGVKANEWIRNNAQ 80

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
             +     K  +A +      +   DG +  +      ++    +     +  +      
Sbjct: 81  GSLTPSDSKTALAIDGSGYFKVTTPDGTEAYERAGSFTVNANGRIVDPNGNYLNIDYSVD 140

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
             + KF  +   +A    +      +   N     +  +  N +++   ++        +
Sbjct: 141 PSTVKFTASNVAVAQDGTISIQNGQT-TTNVGKINIYDVTGNDSMISVGKSLF----VPK 195

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + +        V    I ++Y     V+L  E++ +I  +++Y I++K +   D M   +
Sbjct: 196 AGAQMFVNNKSV----IYQNYLENSNVDLGTEMTDMIVAQRAYQINSKSLETGDNMWSIV 251

Query: 476 LEGVK 480
               K
Sbjct: 252 NNMKK 256


>gi|326386932|ref|ZP_08208546.1| flagellar basal body rod protein FlgG [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208612|gb|EGD59415.1| flagellar basal body rod protein FlgG [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 262

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 2/183 (1%)

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
           +      +     +    A +       +    +        +  + T        ++  
Sbjct: 75  IQSTTPDMTEGSLQSTGNALDLALDGDGYFQISMPGGQLSYTRAGNFTRSPEGLLVTSQG 134

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
           +         +    +               S   +     +A       L     N   
Sbjct: 135 YALQPQITIPEGATGITVAQDGTVSATLPGSSQATSIGQITIASFTNPAALKAIGDNFYT 194

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
             E   S    L +  Q    ++ + +     V++  EL  +I+ +++Y I++K++   D
Sbjct: 195 --ETTGSGPVQLGIAGQNGRGNVRQGFLEASNVSVVSELVDMIECQRAYEINSKMVSAVD 252

Query: 470 KML 472
            ML
Sbjct: 253 DML 255



 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/208 (7%), Positives = 35/208 (16%), Gaps = 27/208 (12%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------------- 49
            +    A+        +   I  N+ N     + R                         
Sbjct: 3   SSALYVARTGLEAQDTRMRVIANNLANVSTTGFKRDRANFASLAYQDARVAGAQSSNETT 62

Query: 50  -------VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                   T V  +S   +M +  L +  +A+        +  +                
Sbjct: 63  YATGLNLGTGVGIQSTTPDMTEGSLQSTGNALDLALDGDGYFQI------SMPGGQLSYT 116

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                  S E          L   +                    +   +      +I+ 
Sbjct: 117 RAGNFTRSPEGLLVTSQGYALQPQITIPEGATGITVAQDGTVSATLPGSSQATSIGQITI 176

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDF 190
                           +   +       
Sbjct: 177 ASFTNPAALKAIGDNFYTETTGSGPVQL 204


>gi|206896319|ref|YP_002246665.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738936|gb|ACI18014.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM
           5265]
          Length = 221

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 7/168 (4%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
             V   ++    +D    L       +     Y           +    F  +       
Sbjct: 57  NIVDNAYLFTVNRDNMGPLSNTSGYALTNPQAYFVITDGTNRWLTRKGNFELDRDGNVSL 116

Query: 372 PDLINHYCD-SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                   D +  K         +       +Y R+SIG++   +    ++         
Sbjct: 117 QGFYVMNRDGAVAKATDLYSGNLLLVEADTSQYDRDSIGFVSTGQERIINVDEAG----- 171

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            ++ +      V+L  E+  LI  +++Y  S K     D++++  +  
Sbjct: 172 -LTANALEMSNVDLSAEMVKLIAAQRAYQFSAKAFRNADELIEASINL 218


>gi|56419752|ref|YP_147070.1| flagellar basal body rod protein FlgC [Geobacillus kaustophilus
          HTA426]
 gi|56379594|dbj|BAD75502.1| flagellar basal-body rod protein [Geobacillus kaustophilus
          HTA426]
          Length = 150

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MSL    N + +       +   I  NI N D  
Sbjct: 1  MSLFQSLNISASALTAQRLRMDVIASNIANVDTT 34


>gi|294827625|ref|NP_710527.2| flagellar basal body rod protein FlgC [Leptospira interrogans
          serovar Lai str. 56601]
 gi|293385469|gb|AAN47545.2| flagellar basal body rod protein FlgC [Leptospira interrogans
          serovar Lai str. 56601]
          Length = 153

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44
          M L +  N +    +    +   I  NI N+    +      + R   + T
Sbjct: 1  MGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMT 51



 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     VN+  E++ +I   +SY  + ++I  +  M    LE  +
Sbjct: 107 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGR 152


>gi|254511648|ref|ZP_05123715.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium
          KLH11]
 gi|221535359|gb|EEE38347.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium
          KLH11]
          Length = 128

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50
          MS  +     + +     + +   +  NI NAD   Y R+           
Sbjct: 1  MSDFSHSLTASASALRAQAARLRHVSENISNADTPGYRRKTVPFETVKRGG 51


>gi|222148673|ref|YP_002549630.1| flagellar hook protein [Agrobacterium vitis S4]
 gi|221735659|gb|ACM36622.1| flagellar hook protein [Agrobacterium vitis S4]
          Length = 108

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS+  V N A +       +  +I  NI NAD   Y R +T  + S   V   T RS +
Sbjct: 1  MSISGVLNSATSGMLAQQTRLTNIASNIANADTPGYQRLNTTLSASGSGVAATTTRSTD 59


>gi|56695104|ref|YP_165451.1| flagellar basal body rod protein FlgC [Ruegeria pomeroyi DSS-3]
 gi|56676841|gb|AAV93507.1| flagellar basal-body rod protein FlgC [Ruegeria pomeroyi DSS-3]
          Length = 135

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          MS  +   +   +     + +   +  NI NAD   Y R+     
Sbjct: 6  MSEFSKSLSVTASALRAQATRLRHVSENISNADTPGYRRKTVPFE 50


>gi|332800001|ref|YP_004461500.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1]
 gi|332697736|gb|AEE92193.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1]
          Length = 255

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/245 (6%), Positives = 58/245 (23%), Gaps = 36/245 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++       +   +   +   I  N+ N +   + +   +                    
Sbjct: 1   MIRGLYTGASGMLSEMSRTDVISNNLANVNTSGFKKDRAIFRALPEMNIHRFDDPITVGL 60

Query: 46  ------------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93
                           V +      N +     +   S+ +      + F  ++      
Sbjct: 61  DRVIDPRPFIGMLGTGVMLDEI---NTDFSQGAIKVTSNPLDIALRGEGFFEVQTPEGIR 117

Query: 94  DHYNNSPTHYISKLRDSLESY----SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
              + S T        + + Y                V+ + +  V         ++ + 
Sbjct: 118 YTRDGSFTIDRDGYIVTKDGYYVLGENGPMLLPQEGDVVISQQGEVTVSGQFVDRLEIVN 177

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
                ++  + SNL    +     +  +        + +   +  D++    +       
Sbjct: 178 FADQGQVVKQGSNLYNSQAPTVPTDAEVIQGALEGSNTNTISEMVDLITAFRAYEASQKV 237

Query: 210 IVRNN 214
           I  ++
Sbjct: 238 IQTHD 242



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           G + K  S+ ++    +      + +        N   E+  LI   ++Y  S K+I   
Sbjct: 182 GQVVKQGSNLYNSQAPTVPTDAEVIQGALEGSNTNTISEMVDLITAFRAYEASQKVIQTH 241

Query: 469 DKMLQTLLE 477
           D+ L   + 
Sbjct: 242 DETLDRAVN 250


>gi|303248240|ref|ZP_07334503.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans
           JJ]
 gi|302490378|gb|EFL50289.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans
           JJ]
          Length = 261

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/200 (6%), Positives = 34/200 (17%), Gaps = 22/200 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV------- 53
           MS+L+    A +       +      N+ N +   Y R       +              
Sbjct: 3   MSMLSAVFGALS----TELRLNLSANNLANVNTTGYKRDRVSFEDTFLRYAHDYHMDPRG 58

Query: 54  ----------TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                             + ++ +     A+             +          +    
Sbjct: 59  NLREKELLPRADLVATPRLAEQQIDFSQGALQLTGNPLDVAIQGQGFFKVASGGTTYYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                   +          +        +       +           A       +   
Sbjct: 119 NGAFHRDAQGMLVTDQNYPVIGNG-GPVQIPDGRDISIDGAGSIYVDGAQVGQIDVVRVQ 177

Query: 164 RRFLSELTVVNDAIKFKTAS 183
                +    N  +    A+
Sbjct: 178 NPESLQKYGANLYMAQSGAT 197



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/178 (8%), Positives = 47/178 (26%), Gaps = 7/178 (3%)

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
            + +  S           +          +                              
Sbjct: 79  EQQIDFSQGALQLTGNPLDVAIQGQGFFKVASGGTTYYTRNGAFHRDAQGMLVTDQNYPV 138

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G+     + + ++++       +   +         V  +    +L +Y  N       
Sbjct: 139 IGNGGPVQIPDGRDISIDGAGSIYVDGAQ---VGQIDVVRVQNPESLQKYGANLY----M 191

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +S +             +++ Y     V + EE+  +I+ +++Y    K++  T+ +
Sbjct: 192 AQSGATVREGAVADGETRVAQGYLEKPNVQVVEEMVNMIETQRTYEAYQKVMTNTNDL 249


>gi|203284669|ref|YP_002222409.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly]
 gi|201084112|gb|ACH93703.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly]
          Length = 282

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           I         VN   E+  +I V + Y  + K I   D +L  L+ 
Sbjct: 232 IESGVLECSNVNAINEMVSMITVNRVYEANQKTIQTEDTLLGKLIN 277



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 34/209 (16%), Gaps = 40/209 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRD-------- 40
           ++     A +       +   I  N+ N D   Y               RR         
Sbjct: 1   MVRGIYTAASGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTNDDGLYKF 60

Query: 41  --------TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V          +     L    + +            +E    
Sbjct: 61  PKGYLETAPVVGKLGTGVEENEI---YTSFEQGPLKITGNPLDLALT-------EEGFFV 110

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                              E          +         +      T   ++       
Sbjct: 111 VQTPEGERYTRNGSFTLGREGILITKDGYPVIGEKGYIHIKDNNFKITEQGQIFHNSTFE 170

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKT 181
                L   +   + +   + N  I    
Sbjct: 171 SNPKRLVSESENSWENYELLDNLKIVNFE 199


>gi|289523333|ref|ZP_06440187.1| flagellar basal-body rod protein FlgG [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503025|gb|EFD24189.1| flagellar basal-body rod protein FlgG [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 256

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 45/185 (24%), Gaps = 7/185 (3%)

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
           ++   +     +     N  +V                                  +   
Sbjct: 75  LSETTVDLSEGQVVSTDNPLDVAISGRGFFSLRDGAGNIFYSRAGNFTLDANGFIVNQEG 134

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                      NV +++           +  +      +        L  YA+N   +  
Sbjct: 135 LTLLGDGGVPINVGDVSSVAIDERGTVVADGEILGAIQLFEFANPTYLRNYAKNL--FQA 192

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +    L          +         VN+  E+  LI+ +++Y  S + +   D+  
Sbjct: 193 NEAAGEPVLVETPM-----LVPGALEKSNVNVVYEMVRLIEGQRAYEASARTLTMQDEQT 247

Query: 473 QTLLE 477
            +++ 
Sbjct: 248 GSMIN 252



 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/194 (6%), Positives = 34/194 (17%), Gaps = 28/194 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A +      +       N+ N D   + RR ++                    
Sbjct: 1   MFRGLYGASSAMLVQEKVIDVASNNLANVDTAGFKRRISVNKSFPEVMIERREAVGPFER 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                       V       ++ +  + +  + +      + F +L++         N  
Sbjct: 61  QVYWPIGSASLNVVLSETTVDLSEGQVVSTDNPLDVAISGRGFFSLRD------GAGNIF 114

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                        +  N     L             +          +            
Sbjct: 115 YSRAGNFTLDANGFIVNQEGLTLLGDGGVPINVGDVSSVAIDERGTVVADGEILGAIQLF 174

Query: 161 SNLRRFLSELTVVN 174
                        N
Sbjct: 175 EFANPTYLRNYAKN 188


>gi|124516714|gb|EAY58222.1| putative flagellar basal body rod protein [Leptospirillum rubarum]
          Length = 267

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 26/142 (18%), Gaps = 32/142 (22%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------- 45
            +      Q    +  N+ N +   + R                                
Sbjct: 9   VSGAQAQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPGFRMTPWGE 68

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                  + ++V        +         +  + +      + F  +          N 
Sbjct: 69  FPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDVAIKGEGFFRILTPRGEVLSRNG 128

Query: 99  SPTHYISKLRDSLESYSKNLSE 120
             T        + E Y     +
Sbjct: 129 RFTLDRGGRLVTHEGYGVLGED 150


>gi|238916189|ref|YP_002929706.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC
           27750]
 gi|238871549|gb|ACR71259.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC
           27750]
          Length = 256

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/143 (6%), Positives = 24/143 (16%), Gaps = 28/143 (19%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-----------------------M 42
               A +      ++   +  N+ NA    Y +                           
Sbjct: 4   GLYTAYSGLTVQQKRLDVVSNNLANATTTGYKKEGLTTQSFKDVYGIKVKDETVGYINQN 63

Query: 43  TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                    V                   +            ++    +      ++   
Sbjct: 64  IGTLNLGAKVGESFRSWDQ---GSFQNTGNTFDFALSGSGLFSI--SFTNKAGETSTLYT 118

Query: 103 YISKLRDSLESYSKNLSEDILGK 125
                + + E Y      D +  
Sbjct: 119 RDGSFQMNREGYLVTKDGDFVLG 141



 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                        +++ Y     +N+  E+  +I + + +  + K++   D+ML
Sbjct: 194 AVDGATQTEATAKVNQGYLEASNINVVTEMVDMISIARDFESNQKIMNTIDEML 247


>gi|203288202|ref|YP_002223217.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1]
 gi|201085422|gb|ACH94996.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1]
          Length = 291

 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           I         VN   E+  +I V + Y  + K I   D +L  L+ 
Sbjct: 241 IESGVLECSNVNAINEMVSMITVNRVYEANQKTIQTEDTLLGKLIN 286



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/209 (7%), Positives = 34/209 (16%), Gaps = 40/209 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRD-------- 40
           ++     A +       +   I  N+ N D   Y               RR         
Sbjct: 10  MVRGIYTAASGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTNDDGLYKF 69

Query: 41  --------TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                    +       V          +     L    + +            +E    
Sbjct: 70  PKGYLETAPVVGKLGTGVEENEI---YTSFEQGSLKITGNPLDLALT-------EEGFFV 119

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                              E          +         +      T   ++       
Sbjct: 120 VQTPEGERYTRNGSFTLGREGILITKDGYPVIGEKGYIHIKDNNFKITEQGQIFHNSTFE 179

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKT 181
                L   +   + +   + N  I    
Sbjct: 180 SNPKRLVSESENSWENYELLDNLKIVNFE 208


>gi|308071138|ref|YP_003872743.1| flagellar basal body rod protein [Paenibacillus polymyxa E681]
 gi|305860417|gb|ADM72205.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681]
          Length = 275

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/176 (7%), Positives = 44/176 (25%), Gaps = 4/176 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I   +  +      +          + D ++     ++     +    ++       GS 
Sbjct: 97  IQGNAMFEVQGNGQKAWTRDGSFHFVPDPNDSATMMLTTAEGYSVLDNNDVPVTAPAGSK 156

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                     +                  +  P      +  L                 
Sbjct: 157 VAISSDGELLIRANGTGAPTVGQRIKLMDVQRPEGLEQRDDNLFVLLNGVTE----ANVF 212

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                  +      +   Y     V+L  E++ +++V++ Y ++ + +  +D M+ 
Sbjct: 213 GAAGVAGAVPADVSVRSGYLEESNVDLAGEMTDMMQVQRMYQMAARALTSSDTMMN 268



 Score = 44.6 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 7/115 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A     +  Q+   I  NI N +   Y  +         NV     +  +  +
Sbjct: 1   MNNSMIGAMVSMASVQQRLDLIADNIANINTVGYKSKQGSFEDVLANVQ----QQPSTYL 56

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
            +         +G      +     E               ++   +++     N
Sbjct: 57  QNGRAMPLGYNLGYGVKTAAIMKNME---QGPLKETGLPTDLAIQGNAMFEVQGN 108


>gi|317052365|ref|YP_004113481.1| flagellar basal-body rod protein FlgC [Desulfurispirillum indicum
          S5]
 gi|316947449|gb|ADU66925.1| flagellar basal-body rod protein FlgC [Desulfurispirillum indicum
          S5]
          Length = 151

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
          MS       + +      Q+   I  N+ NA          Y R+D + 
Sbjct: 1  MSFFDGLKISSSALFAQRQRMNVISSNLANAHTTRAEDGTYYKRKDLVF 49



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +N+ EE++ +I   +SY  +  +I    KM    L   +
Sbjct: 111 NINVVEEMTDMITASRSYEANITMIETIKKMANEALGLGR 150


>gi|239907806|ref|YP_002954547.1| putative flagellar basal-body rod protein [Desulfovibrio
          magneticus RS-1]
 gi|239797672|dbj|BAH76661.1| putative flagellar basal-body rod protein [Desulfovibrio
          magneticus RS-1]
          Length = 128

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRS 57
          +    + AQ+  +  S   A    N+ N +   Y  +D         + V V     
Sbjct: 1  MTDAISAAQSALSAFSTSMAVTANNVANVNTDGYKSQDARLETGPDGQGVRVSDIVR 57



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 34/126 (26%)

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              ++S                 N+  +     +                   + +    
Sbjct: 1   MTDAISAAQSALSAFSTSMAVTANNVANVNTDGYKSQDARLETGPDGQGVRVSDIVRDAS 60

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                   +   +Q      S     T  V+L  +   +I+  +++  +   I   D+ML
Sbjct: 61  PGGYQPESVSAYNQAGVYEPSAGLVETSNVDLARQTVDMIQTSRAFEANVVTIRSQDQML 120

Query: 473 QTLLEG 478
            TLL+ 
Sbjct: 121 GTLLDM 126


>gi|317129211|ref|YP_004095493.1| flagellar basal-body rod protein FlgC [Bacillus cellulosilyticus
          DSM 2522]
 gi|315474159|gb|ADU30762.1| flagellar basal-body rod protein FlgC [Bacillus cellulosilyticus
          DSM 2522]
          Length = 148

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPEN 49
          MS+    N + +       +   +  N+ NAD             Y R+  +   +   
Sbjct: 1  MSIFHGINTSASALTAQRLRMDVVSSNMANADTTRARLVDGEWQPYRRKMVVLEQNGSG 59


>gi|269836584|ref|YP_003318812.1| flagellar basal-body rod protein FlgC [Sphaerobacter thermophilus
          DSM 20745]
 gi|269785847|gb|ACZ37990.1| flagellar basal-body rod protein FlgC [Sphaerobacter thermophilus
          DSM 20745]
          Length = 154

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48
          MS+      + +       +   I  NI N D     +   Y RR  + T  P 
Sbjct: 1  MSIFETMRVSMSGLTAQRLRMDVIASNIANVDTTRTPEGGPYRRRQVVFTAVPA 54


>gi|312794500|ref|YP_004027423.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876698|ref|ZP_07736678.1| fagellar hook-basal body protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796538|gb|EFR12887.1| fagellar hook-basal body protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312181640|gb|ADQ41810.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 255

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 6/143 (4%), Positives = 21/143 (14%), Gaps = 21/143 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       N+ N     + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                            +    +       +        F A++  +             
Sbjct: 61  NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIE--VPGSQGAQQILYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKT 126
                 +       L    +   
Sbjct: 119 NGAFTLNSRGELVTLDGFYVLGQ 141



 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + Y     VN  +E+  +I V ++Y  + K     D+ LQ  + 
Sbjct: 203 GRILQGYLEGSNVNSVQEMVDMISVLRAYEANQKAFTIQDETLQKAVN 250


>gi|23100411|ref|NP_693878.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831]
 gi|22778644|dbj|BAC14912.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831]
          Length = 276

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 76/281 (27%), Gaps = 7/281 (2%)

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
           +S+++  + +  N     +                + +   S  +T + N +        
Sbjct: 1   MSQMMIQAAVTMNQLQNKLDLIGNNMANSQTTGYKSRQAEFSSLLTQQVNNLTDPANAQG 60

Query: 261 SNQGSAVPKGKIKALLQIRDSVVPIF-QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                 +  G    L     ++     Q    ++   L             +  V   + 
Sbjct: 61  RLTPDGIRVGSGSRLGSTNMNLNQGAIQETNRDLDVALTSENLLFQVEVTENGQVGTRYT 120

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
            DG   L       +  +         N   +          +     L    +      
Sbjct: 121 RDGSFYLSPMENGQMMLSTSDGNPVIGNNGPILIQDGFDSIEINEYGQLLVERNGQQAIE 180

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
           D  +      P    +T   L +     +  L  N  +          +   +       
Sbjct: 181 DQLSVVEAIRPRLLESTGQNLFQLPN--LEALGFNAEEIIQETNPQTAI---LQSKALEQ 235

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             V++ +E+S L+  ++ Y  +++ I   D+M+  L+  ++
Sbjct: 236 SNVDISKEMSDLLMTQRLYQFNSRTITMGDQMMG-LVNQIR 275



 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 51/193 (26%), Gaps = 19/193 (9%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
             +   I  N+ N+    Y  R    +                 +  + ++  +     Q
Sbjct: 16  QNKLDLIGNNMANSQTTGYKSRQAEFSS----------------LLTQQVNNLTDPANAQ 59

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
             L          S     N +      +  +     +      +    V +N +   + 
Sbjct: 60  GRLTPDGIRVGSGSRLGSTNMNLNQGAIQETNRDLDVALTSENLLFQVEVTENGQVGTRY 119

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
               +  +  +    + ++ L  S+    +     +     F +   ++    L +R+  
Sbjct: 120 TRDGSFYLSPME---NGQMMLSTSDGNPVIGNNGPILIQDGFDSIEINEYGQLLVERNGQ 176

Query: 198 LQKISEIIGISTI 210
                ++  +  I
Sbjct: 177 QAIEDQLSVVEAI 189


>gi|303327773|ref|ZP_07358213.1| putative flagellar basal-body rod protein [Desulfovibrio sp.
          3_1_syn3]
 gi|302862134|gb|EFL85068.1| putative flagellar basal-body rod protein [Desulfovibrio sp.
          3_1_syn3]
          Length = 133

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS +    N   +  N  S   A    N+ N +   +  +  +    P    V       
Sbjct: 1  MSGITGSMNLGASAMNAHSWGMAVTAHNVANVNTAGFAPQHAVYATGPGGRGVRLDAVLQ 60

Query: 60 KNMFDKVL 67
           +     L
Sbjct: 61 DSGVAGRL 68



 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           G +L  E++ +I  +++Y  + +++   D ML TLL+  
Sbjct: 94  GTDLGREMTQMISTQRTYEANAQVVRTGDAMLGTLLDLK 132


>gi|312876494|ref|ZP_07736477.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311796705|gb|EFR13051.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 147

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M +    N + +       +   I +NI NA+         Y R+  +   
Sbjct: 1  MGMFDAINISSSALAAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEE 51


>gi|257876010|ref|ZP_05655663.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus
           EC20]
 gi|257810176|gb|EEV38996.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus
           EC20]
          Length = 260

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 23/172 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47
           M++  +   +++  N+      +   NI N +   Y  + T                   
Sbjct: 1   MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60

Query: 48  ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  ++  + +   +     L   +  +        F  +++               
Sbjct: 61  NAAQYGASMGAKATTTTSFAQGNLAGTTQPLDLAIQGNGFFGVRDQTGQL------LLSR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 S      N     +  T      +       +     ++  + + +
Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQ 166



 Score = 50.0 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 5/248 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L       +N  + N  T  +    +  +G    +    A+ +  I A   + +     +
Sbjct: 6   LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQY 65

Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                                     +       F     +     L +  +  +  N Q
Sbjct: 66  GASMGAKATTTTSFAQGNLAGTTQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++  +     +      W                +   +  +   +       T  E 
Sbjct: 126 LVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                  L +    +      +   F  + +       V+L   ++ L+  +++Y ++ K
Sbjct: 184 ITPVGNQLYRAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTK 243

Query: 464 LIMFTDKM 471
            +   D+M
Sbjct: 244 AMQTADEM 251


>gi|158422269|ref|YP_001523561.1| flagellar basal body rod protein FlgF [Azorhizobium caulinodans ORS
           571]
 gi|158329158|dbj|BAF86643.1| flagellar basal body rod protein [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/231 (6%), Positives = 51/231 (22%), Gaps = 2/231 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++ A+I  N+ N +   Y   +   +           +  +   
Sbjct: 1   MSNGLYVALSGQMATEKRMATIANNVANMNTPGYRAEEIKFSSIMAEQGAKDIKFASTG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +      +  I             +   +    +        +   + +    +++   
Sbjct: 60  -ESYTSRRAGPITYTNSPYDVAVQGKGWFSVKTPDGVAYTRDGRFNVTADGMLVSVNNYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                        I    +    L +  +          N A+    A
Sbjct: 119 VLDQGGTAVMIQPNQGELKITADGTIIQGTNPVGTLGLFEIPLDAKLKRYDNSAVIPDKA 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           +        +       + S +  +  + R       + S    + +    
Sbjct: 179 ATPVTDYNSNAIRQGYVEGSNVDPVMEMTRLIMVQRAFESAAQAISQQETS 229



 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 4/162 (2%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +    P  +                 +T       R     +   G +     + V + 
Sbjct: 63  TSRRAGPITYTNSPYDVAVQGKGWFSVKTPDGVAYTRDGRFNVTADGMLVSVNNYPVLDQ 122

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
            G   +I               + G N   TL  +       L++  + +      +  V
Sbjct: 123 GGTAVMIQPNQGELKITADGTIIQGTNPVGTLGLFEIPLDAKLKRYDNSAVIPDKAATPV 182

Query: 429 FN----HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            +     I + Y     V+   E++ LI V++++  + + I 
Sbjct: 183 TDYNSNAIRQGYVEGSNVDPVMEMTRLIMVQRAFESAAQAIS 224


>gi|297530608|ref|YP_003671883.1| flagellar basal-body rod protein FlgC [Geobacillus sp. C56-T3]
 gi|297253860|gb|ADI27306.1| flagellar basal-body rod protein FlgC [Geobacillus sp. C56-T3]
          Length = 150

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MSL    N + +       +   I  NI N D  
Sbjct: 1  MSLFQSLNISASALTAQRLRMDVIASNIANVDTT 34


>gi|332298513|ref|YP_004440435.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM
           12168]
 gi|332181616|gb|AEE17304.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM
           12168]
          Length = 265

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 48/233 (20%), Gaps = 21/233 (9%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVT------- 51
               +  N    +  +I  N+ NAD   Y R  T++   P         + V        
Sbjct: 6   YIGSSGMNAQQNRLDAISNNLANADTTAYKRDVTVSKSFPELLMRRMNDDGVYRTPFGSA 65

Query: 52  ----VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               +V +        +        +  Q           E   A               
Sbjct: 66  DAAPIVGKIGLGVETNELYTDFEQGSFKQTSSKADMALSGEGFFAVQTPAGERYTRNGNF 125

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
               E   +      +                     +         +    +       
Sbjct: 126 MIGKEGILETKEGYPVLGENGYIRVNDDSFTVNPDGMIYSADDMELIDRFKVVRFDNERY 185

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
            +    +   K    S         +R   +Q  +E   ++ +    + + V 
Sbjct: 186 LQKMG-SSLYKNTDISGEAYIAEGKERPAFIQGYTETSNVNVVNEMVSMIEVN 237



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           + Y+ T  VN+  E+  +I+V ++Y  + K I   D M+ TL
Sbjct: 216 QGYTETSNVNVVNEMVSMIEVNRAYEANQKTIQTEDTMMSTL 257


>gi|296274007|ref|YP_003656638.1| flagellar basal-body rod protein FlgC [Arcobacter nitrofigilis
          DSM 7299]
 gi|296098181|gb|ADG94131.1| flagellar basal-body rod protein FlgC [Arcobacter nitrofigilis
          DSM 7299]
          Length = 153

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN--YVRRDTMTTIS 46
          M     +N A +  +    +   +  NI NA          Y +++ +    
Sbjct: 1  MGFFDGYNIASSGMSAQRTRINVVSANIANAKTTHSTDGGPYKKQNVVFQEM 52


>gi|315649858|ref|ZP_07902941.1| fagellar hook-basal body protein [Paenibacillus vortex V453]
 gi|315274832|gb|EFU38213.1| fagellar hook-basal body protein [Paenibacillus vortex V453]
          Length = 274

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              +   + +   +     VNL +E++ +++V+++Y +  + +  +D M+  L   ++
Sbjct: 217 APGEPPKSSVLSGFVEQSNVNLTDEMTKMMEVQRAYQLMARALSSSDTMMN-LANTMR 273



 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
          +      A    N   Q+   I  N+ N +   Y +++         V  
Sbjct: 1  MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFDDVLTQVQG 50


>gi|77918761|ref|YP_356576.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380]
 gi|77544844|gb|ABA88406.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380]
          Length = 245

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 41/182 (22%), Gaps = 3/182 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENK 60
           +      A +      Q   +I  N+ N +   + +  ++     E V       R    
Sbjct: 1   MNRGTYVALSGALVRQQLMDTISHNLSNNETVGFKKGQSVFKTMLERVQTGEILERVNLA 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLS 119
            + +         +    +        E     +    +        LR   E +  N  
Sbjct: 61  EIEEGFTDFSQGTLSPSGIQTHMAIQGEGFFKVEDEAGNIYYTRQGNLRLDYEGHLINNQ 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              L             +F         +      +I L   +    L+       ++  
Sbjct: 121 GMALLGEDRRPITLTSPDFTVDDDGTITLEDGQKIKIPLYTFDDYSVLTRQGGGQFSVPK 180

Query: 180 KT 181
             
Sbjct: 181 GQ 182


>gi|150019059|ref|YP_001311313.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905524|gb|ABR36357.1| flagellar basal body rod protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 256

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 48/221 (21%), Gaps = 15/221 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++  F  + +           +  NI N +N  Y +R+   +   + +    Q+      
Sbjct: 1   MIRGFYTSVSGLIALQNDQEVVTNNIANVNNTGYKKRELTKSSFEDVMISNRQKLVGDKY 60

Query: 63  FDKVLHA--------------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               +                   A      +  F           + N          +
Sbjct: 61  VKNDIGNLNMGVKVNDVETVFTQGAFKSTDSMTDFAIDGRGFFVAQNGNKEVYTRDGNFK 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y        +                 S   +     + + E    +  L     
Sbjct: 121 INNQGYLITNDGSQVLGINNSTGAREPIYVGDSKFSIDG-DNNINIEGVGAVDKLLTADF 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
           +     + I    ++  +               S  +  ST
Sbjct: 180 QNYNNLEPIGDNYSTMDNPIYNAKVNVRQNFLESSNVDPST 220


>gi|312136040|ref|YP_004003378.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis
           OL]
 gi|311776091|gb|ADQ05578.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis
           OL]
          Length = 255

 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 4/143 (2%), Positives = 21/143 (14%), Gaps = 21/143 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       N+ N     + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKTSSPD 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                            +    +       +        F  ++  +   +         
Sbjct: 61  NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFTVE--VPESEGGQQVLYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKT 126
                 +       +    +   
Sbjct: 119 NGAFTLNSRGELVTIDGFYVLGQ 141



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + Y     VN  +E+  +I V ++Y  + K     D+ LQ  + 
Sbjct: 203 GKILQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFTIQDETLQKAIS 250


>gi|86139479|ref|ZP_01058048.1| flagellar basal-body rod protein FlgC [Roseobacter sp. MED193]
 gi|85823982|gb|EAQ44188.1| flagellar basal-body rod protein FlgC [Roseobacter sp. MED193]
          Length = 130

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS  +   +   +     + +   +  NI NAD   Y R+      +
Sbjct: 1  MSEFSNSLSVTASGLKAQATRLRHVSENISNADTPGYRRKSVPFEAA 47


>gi|317133466|ref|YP_004092780.1| flagellar hook-basal body protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471445|gb|ADU28049.1| flagellar hook-basal body protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 234

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 1/149 (0%)

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                  L               +                 N   +              
Sbjct: 79  SFVQTGSLLNFAPRGEGFFAVRDAQGVVSYTRDGTFTAQPENGAAVLVDAQGRTVLDAQG 138

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           N   + + V      V    + +N         + S             +  +Y  T  V
Sbjct: 139 NAIAVQNGVPQTQPGVFAFAFPQNLTALGGSLFAASASSGAAQVSDEGVLQGAY-ETSNV 197

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +L  E+  +I  ++ + ++ +++   D++
Sbjct: 198 DLSSEMGNMIVTQRGFQMNARVVSTADQI 226



 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 15/123 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV---------- 52
           ++  F        +       I  +I N +   YV+RDT  +    +  V          
Sbjct: 1   MIQAFFGGAASLRSRQTAMDVIANDIANVNTAGYVQRDTDFSDLLYDSMVRPENPSYANE 60

Query: 53  -----VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                    +   +          S +      + F A+++      +  +       + 
Sbjct: 61  LEGSGAGVDAVVADASAGSFVQTGSLLNFAPRGEGFFAVRDAQGVVSYTRDGTFTAQPEN 120

Query: 108 RDS 110
             +
Sbjct: 121 GAA 123


>gi|15639945|ref|NP_219398.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026184|ref|YP_001933956.1| flagellar basal-body rod protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323282|gb|AAC65916.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018759|gb|ACD71377.1| flagellar basal-body rod protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060316|gb|ADD73051.1| flagellar basal-body rod protein [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 271

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 30/145 (20%), Gaps = 34/145 (23%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM--------TTIS 46
             A +  +   ++  +I +N+ N D  +Y R             R              S
Sbjct: 6   YTAASGMSAQQRRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKNPFGSS 65

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                  +    V             L    S          F  ++     +       
Sbjct: 66  DVSPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEE------- 118

Query: 101 THYISKLRDSLESYSKNLSEDILGK 125
                     +E Y    +   +  
Sbjct: 119 YTRNGNFLVGVEGYLMTKNGYPVLG 143



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +++   S +       +       + +     VN+  E+  +I+V ++Y  + K I   
Sbjct: 199 TYMQTPVSGAPIAAEGPE--RPAAVQGFVEASNVNVVNEMVRMIEVNRAYEANQKTIQAE 256

Query: 469 DKMLQTLLE 477
           D M+  L  
Sbjct: 257 DGMMGRLWN 265


>gi|188582487|ref|YP_001925932.1| flagellar basal body rod protein FlgF [Methylobacterium populi
           BJ001]
 gi|179345985|gb|ACB81397.1| flagellar basal body rod protein [Methylobacterium populi BJ001]
          Length = 246

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/191 (5%), Positives = 31/191 (16%), Gaps = 6/191 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +     +++   I  N+ N     +  R          V        +   
Sbjct: 1   MQNALFVGVSAQAALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60

Query: 63  FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              V+            +             +   A                 + +    
Sbjct: 61  LSYVIDQGTPLDLTQGPVEPDGNPMHVALRGDAFLAVQTPQGVRYTRNGAFELNAQGNLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +            +   + A +         +     ++       +    N  
Sbjct: 121 TSDGYAVQGDGGPITIGQQETGLSIAPDGTVSTNLGIRGRLRLVTFANPQALKSEGANLF 180

Query: 177 IKFKTASKHDA 187
                A     
Sbjct: 181 SSDAPARAAGP 191


>gi|32477362|ref|NP_870356.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH
           1]
 gi|32447913|emb|CAD77433.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH
           1]
 gi|327537337|gb|EGF24070.1| flagellar basal-body rod protein FlgG [Rhodopirellula baltica WH47]
          Length = 268

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 67/256 (26%), Gaps = 5/256 (1%)

Query: 225 TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVP 284
            T  + +  ++       +     +    +    V      +                V 
Sbjct: 17  QTKLDVIANNLANINTTGFKKDRANFEDLLYRTEVYPGVQDSTQTPTAVGTQVGLGVRVT 76

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             Q    +      G   +     G    V      D +      L    +  + +    
Sbjct: 77  STQTDQRQGTLQQTGRDLDVAIQGGGYFRVVDPSSQDTMYTRAGNLDINANGELVMGSAQ 136

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
                 L D           V   +    ++     +   N     +A       LL+  
Sbjct: 137 VG---RLLDPPITIPPDATAVVINSNGEVMVRQPGQTELTNQGQIQLAQFINPDGLLKNG 193

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N     E + S    ++         + +       V   +EL  LI  ++++ ++++ 
Sbjct: 194 ENLYS--ETDASGPEQINNPGTDGMGVLRQGNLEASNVEPVQELIDLITTQRAFELNSQA 251

Query: 465 IMFTDKMLQTLLEGVK 480
           +   D+++Q + +  +
Sbjct: 252 VQAGDQVMQNISQLRR 267



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/140 (7%), Positives = 25/140 (17%), Gaps = 27/140 (19%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------------ 48
           MS+      A         +   I  N+ N +   + +                      
Sbjct: 1   MSV-QTLYTAATGMEAMQTKLDVIANNLANINTTGFKKDRANFEDLLYRTEVYPGVQDST 59

Query: 49  ------NVTVVTQRSENKNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                    V           D+    L      +        +  + +         ++
Sbjct: 60  QTPTAVGTQVGLGVRVTSTQTDQRQGTLQQTGRDLDVAIQGGGYFRVVD-----PSSQDT 114

Query: 100 PTHYISKLRDSLESYSKNLS 119
                  L  +        S
Sbjct: 115 MYTRAGNLDINANGELVMGS 134


>gi|257866397|ref|ZP_05646050.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus
           EC30]
 gi|257873087|ref|ZP_05652740.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus
           EC10]
 gi|257800355|gb|EEV29383.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus
           EC30]
 gi|257807251|gb|EEV36073.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus
           EC10]
          Length = 260

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 23/172 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47
           M++  +   +++  N+      +   NI N +   Y  + T                   
Sbjct: 1   MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60

Query: 48  ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  ++  + +   +     L   +  +        F  +++               
Sbjct: 61  NAAQYGASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQL------LLSR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 S      N     +  T      +       +     ++  + + +
Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQ 166



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 5/248 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L       +N  + N  T  +    +  +G    +    A+ +  I A   + +     +
Sbjct: 6   LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQY 65

Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                                     +       F     +     L +  +  +  N Q
Sbjct: 66  GASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++  +     +      W                +   +  +   +       T  E 
Sbjct: 126 LVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                  L +    +      +   F  + +       V+L   ++ L+  +++Y ++ K
Sbjct: 184 ITPVGNQLYRAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTK 243

Query: 464 LIMFTDKM 471
            +   D+M
Sbjct: 244 AMQTADEM 251


>gi|237752809|ref|ZP_04583289.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376298|gb|EEO26389.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 277

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/198 (8%), Positives = 46/198 (23%), Gaps = 26/198 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VVTQ 55
           +   +  +         +   I  NI NA+   + R D +                +  Q
Sbjct: 1   MQGGYYNSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIDEQ 60

Query: 56  RSENKNMFDKVLH---------AHSSAIGQQRLLQSF---EALKEMMSADDHYNNSPTHY 103
             +    +++ L+           +   G      +F    + + M    +  +      
Sbjct: 61  TKDAAQFYNRSLNRVPQIVEEYTDNKVGGMMITDNTFDFALSKENMYFMVETPDGIRYTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + +          +      +A             +   + + D    +   +L
Sbjct: 121 DGSFVLNEQGRLVTKEGYPVLPREYLDA-------PQYIEFIDGFQVEVDSNGNIYTRDL 173

Query: 164 RRFLSELTVVNDAIKFKT 181
                    +   I   +
Sbjct: 174 NNEGISEMALMANIGVVS 191


>gi|163852465|ref|YP_001640508.1| flagellar basal body rod protein FlgF [Methylobacterium extorquens
           PA1]
 gi|163664070|gb|ABY31437.1| flagellar basal body rod protein [Methylobacterium extorquens PA1]
          Length = 246

 Score = 54.7 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/193 (4%), Positives = 28/193 (14%), Gaps = 6/193 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +     +++   I  N+ N     +  R          V        +   
Sbjct: 1   MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60

Query: 63  FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              V+           ++             +                            
Sbjct: 61  LSYVIDQGTPLDLTQGSVEPDSNPMHVALRGDAFLTVQTPQGLRYTRNGAFELDATGNLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +            +     A +         +     ++       +    N  
Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFPNAQALKSEGANLF 180

Query: 177 IKFKTASKHDAHD 189
                A       
Sbjct: 181 SSEAPARPAGPGA 193


>gi|332981429|ref|YP_004462870.1| flagellar basal-body rod protein FlgC [Mahella australiensis 50-1
          BON]
 gi|332699107|gb|AEE96048.1| flagellar basal-body rod protein FlgC [Mahella australiensis 50-1
          BON]
          Length = 129

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPEN-VTVV 53
          M +    N + +       +   I +NI NA+     +   YVR+  + + S    V V 
Sbjct: 1  MGMFDAINNSASGLTAQRLRMDIISQNIANANTTRTPEGGPYVRQMPVFSQSSSGMVQVQ 60

Query: 54 TQ 55
            
Sbjct: 61 AI 62


>gi|294679032|ref|YP_003579647.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB
           1003]
 gi|294477852|gb|ADE87240.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB
           1003]
          Length = 237

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/117 (9%), Positives = 29/117 (24%), Gaps = 3/117 (2%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      Q+   +  N+ N +   + R   + +   +++          +   + +   
Sbjct: 12  QSGLM---QEMQVVANNMANVNTTGFRREGVVFSEYVDSLDGDEASLSMAHASGRTIDFD 68

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
           S A+        F    E     +    +          S E          +    
Sbjct: 69  SGAVASTGNQLDFAIQGEGFFMIETPEGNQLTRAGSFLRSPEGELVTPEGFRVLDNG 125


>gi|302671950|ref|YP_003831910.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396423|gb|ADL35328.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio
           proteoclasticus B316]
          Length = 277

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 70/269 (26%), Gaps = 19/269 (7%)

Query: 205 IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
           + + T    N +   Y  +G T      +     K  +    +      I+  V      
Sbjct: 19  MDVLTNNLANANTNGYKKEGLTARAFSDQLALKIKDYTDAPNTARGLGIINPGVKIGESY 78

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
               +G +K      D  +         +         E+D                   
Sbjct: 79  VDWSEGPMKETKNTFDFAIGG--RGFFAVEYTNKAVNIERDTAGQMDVMYTRDGCFTMNV 136

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           + +     G           + +P+ L          + +   +A             + 
Sbjct: 137 NGEITTQDGDYVLDDSGSHIQLDPN-LPVEIDTLGNVIQDGAVVAKIGVYDFEATTYPDG 195

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
              +D +     N  +             + + +  +          +   +     V++
Sbjct: 196 RISYDNLLHYGENFFIP----------AGDDAGAEVVENA------RVYSGFLEQSNVSV 239

Query: 445 QEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            +E+  +I  +++Y+ + ++I   D  LQ
Sbjct: 240 VDEMVNMIATQRNYDTNQRMITTIDDTLQ 268


>gi|294679035|ref|YP_003579650.1| flagellar basal-body rod protein FlgC [Rhodobacter capsulatus SB
          1003]
 gi|294477855|gb|ADE87243.1| flagellar basal-body rod protein FlgC [Rhodobacter capsulatus SB
          1003]
          Length = 131

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 15/52 (28%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55
           +  + + +     S +   +  NI NAD   Y R+                
Sbjct: 5  TSTLSVSASGLKAQSMRLRHVSENIANADTPGYHRKVVRFEELAAQKDGGAT 56



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           G +E ++ +   ++     + +     Y +   V+L  E++   + ++SY  + ++   T
Sbjct: 61  GPVELDQKELARIYDPGSPLAD--ENGYYDGSNVDLVVEIADARQAQRSYEANLRMFDQT 118

Query: 469 DKMLQTLLEGVK 480
            +M   L+E ++
Sbjct: 119 RQMSSALMELLR 130


>gi|291059787|gb|ADD72522.1| flagellar basal-body rod protein FlgC [Treponema pallidum subsp.
          pallidum str. Chicago]
          Length = 152

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 25/81 (30%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI--------- 45
          M L +  N A    +    +   I  NI NA +    +   + R   +            
Sbjct: 2  MGLFSGINIAATGMSAQRLRADVISDNIANASSTRTQEGGVFRRSRVVLAQKNPGIDWRI 61

Query: 46 ----------SPENVTVVTQR 56
                        V VV+  
Sbjct: 62 PFVPEQLDRGVGTGVRVVSIE 82



 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             + +     Y     V++  E+  LI   ++Y  +  +I  + +M Q  LE  +
Sbjct: 98  DAILSGPKAGYVEYPNVDIVTEMVDLISASRAYEANISVISGSKEMFQRALEIAR 152


>gi|163760754|ref|ZP_02167834.1| probable flagellar basal body rod protein [Hoeflea phototrophica
          DFL-43]
 gi|162282076|gb|EDQ32367.1| probable flagellar basal body rod protein [Hoeflea phototrophica
          DFL-43]
          Length = 112

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVV 53
          + ++ N A +     S++  +I  N+ N D  +Y R+     T +   V  V
Sbjct: 2  ISSIINTAFSGMAAQSKRMDAIASNVANVDTPDYNRKTVEMVTTAGGGVRAV 53


>gi|227874517|ref|ZP_03992687.1| flagellar basal body rod protein FlgG [Oribacterium sinus F0268]
 gi|227839636|gb|EEJ50096.1| flagellar basal body rod protein FlgG [Oribacterium sinus F0268]
          Length = 305

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 36/135 (26%), Gaps = 8/135 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L   + A         +   I  NI N +   +  +      +    +  +   + +  
Sbjct: 1   MLRAMDSAVAGLRAHQNKLDVIGNNIANVNTFGFKSQGYSFKDTMYQTSSTSSGGKQEAS 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +   + A      L          S    + +S   Y+     S+      ++   
Sbjct: 61  GNATIGGANPAQYGYGSLTG--------SIATDFTSSTPSYVGGFNASINGSGFFVTSAS 112

Query: 123 LGKTVIDNAEEVVQN 137
             +  +D A      
Sbjct: 113 NKEVTLDPANTKTTT 127


>gi|222112615|ref|YP_002554879.1| flagellar basal body rod protein [Acidovorax ebreus TPSY]
 gi|221732059|gb|ACM34879.1| flagellar basal body rod protein [Acidovorax ebreus TPSY]
          Length = 107

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRS 57
          ++ A+ + A++    A  +  +   N+ N +   + R+      +P    V   T RS
Sbjct: 7  TMTALASIARSGLQAAQLRLGTSAHNVANLNTPGFTRQVVDQQAAPAQGGVQARTGRS 64


>gi|261419417|ref|YP_003253099.1| flagellar basal body rod protein FlgC [Geobacillus sp. Y412MC61]
 gi|319766232|ref|YP_004131733.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC52]
 gi|261375874|gb|ACX78617.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC61]
 gi|317111098|gb|ADU93590.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC52]
          Length = 150

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MSL    N + +       +   I  NI N D  
Sbjct: 1  MSLFQSLNISASALTAQRLRMDVIASNIANVDTT 34


>gi|323704840|ref|ZP_08116417.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535766|gb|EGB25540.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 53/228 (23%), Gaps = 19/228 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------SPEN 49
           +L     A +      +    +  NI N +   Y +    T                P N
Sbjct: 1   MLRGLYTASSGMIAQQKIVDVLSNNIANVNTAGYKKDTVTTMAFPDYMVTRNGGDNVPYN 60

Query: 50  VTVVT------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             + T        + N N  +  +      +        F  +          + S T  
Sbjct: 61  GNIGTMDYGVLVETFNTNFSEGDIEKTDGKLDFAIDGSGFFTVSTPSGVRYTRDGSFTLN 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +    + + Y        +     D + +   N + + + V K+               
Sbjct: 121 NNGYLVTKDGYYVLGQNGPIQLNNGDISVDESGNISVNGQVVDKLNIVDFANYNTLRKEG 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                           K    +     ++  D ++  IS +       
Sbjct: 181 NNLFFTTGGQAIPATSKVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228



 Score = 40.0 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 56/255 (21%), Gaps = 15/255 (5%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            L                     +N   ++      +  + +            D+V   
Sbjct: 1   MLRGLYTASSGMIAQQKIVDVLSNNIANVNTAGYKKDTVTTMAFPDYMVTRNGGDNV--P 58

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           +   +  M   ++      +   G+ E   G             +          +  + 
Sbjct: 59  YNGNIGTMDYGVLVETFNTNFSEGDIEKTDGKLDFAIDGSGFFTVSTPSGVRYTRDGSFT 118

Query: 346 SNPSFLRDGGSVSKKFLWNVK---NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
            N +              N     N        +       +      +       TL +
Sbjct: 119 LNNNGYLVTKDGYYVLGQNGPIQLNNGDISVDESGNISVNGQVVDKLNIVDFANYNTLRK 178

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N           +             + + Y     VN  +E+  +I   ++Y  + 
Sbjct: 179 EGNNLFFTTGGQAIPATS----------KVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228

Query: 463 KLIMFTDKMLQTLLE 477
           K +   D+ L   + 
Sbjct: 229 KSVSAFDETLDKSVN 243


>gi|320535379|ref|ZP_08035493.1| flagellar basal-body rod protein FlgC [Treponema phagedenis
          F0421]
 gi|320147781|gb|EFW39283.1| flagellar basal-body rod protein FlgC [Treponema phagedenis
          F0421]
          Length = 152

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 26/82 (31%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN---YVRRDTMTTI-------- 45
          M + +  N A    +    +   I  NI NA +    +    + R   + +         
Sbjct: 1  MGMFSSINIAATGMSAERLRTDVISDNIANASSTRTQEGEGPFKRSRVILSEKNPEVTWR 60

Query: 46 -----------SPENVTVVTQR 56
                         V VV+  
Sbjct: 61 TPFVPDTIDKGVGTGVRVVSIE 82



 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Y     VN+  E+  LI   ++Y  +  +I+ + +M Q  LE  +
Sbjct: 105 NAGYVEYPNVNIVTEMVDLISASRAYEANASVILGSKEMFQRALEIGR 152


>gi|218531221|ref|YP_002422037.1| flagellar basal body rod protein FlgF [Methylobacterium
           chloromethanicum CM4]
 gi|218523524|gb|ACK84109.1| flagellar basal body rod protein [Methylobacterium chloromethanicum
           CM4]
          Length = 246

 Score = 54.7 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/223 (5%), Positives = 39/223 (17%), Gaps = 6/223 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +     +++   I  N+ N     +  R          V            
Sbjct: 1   MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRTDRR 60

Query: 63  FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              V+            +             +   A                        
Sbjct: 61  LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +            +     A +         +     ++       +    N  
Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGANLF 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                A        L+   +    +  ++ ++ ++  N    +
Sbjct: 181 SSEAPARPAGPGAHLEPGALERSNVKPVVEMTRLMDVNRTYSM 223


>gi|295697724|ref|YP_003590962.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912]
 gi|295413326|gb|ADG07818.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912]
          Length = 273

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 17/132 (12%)

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV---TLLEYARNSIGWLEKNRSDSHDL 421
                   D         N   I      ++ +    T         G L    +    L
Sbjct: 137 PNGQLYTGDGYRVLAAGPNGQVIPGSSVALDASGAVHTYDGTGAEVFGGLAVLDAPVAAL 196

Query: 422 HMKSQVV--------------FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             +   V                 + + +     V+  + +  +I V ++Y  + K+I  
Sbjct: 197 QKQGTGVYVLTPGAAGGLVPSLAQVRQGFLEQSNVDPGQTMVQMIDVVRAYEANQKVIRT 256

Query: 468 TDKMLQTLLEGV 479
            D+ +  L+  V
Sbjct: 257 VDQSMDKLVNQV 268



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 14/45 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47
          ++     A +      ++   +  N+ NA    Y + +       
Sbjct: 1  MIRGLYIAASGMIAQQRREEIVANNLVNASTPGYKQDEPSLRTFG 45


>gi|283850806|ref|ZP_06368092.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B]
 gi|283573729|gb|EFC21703.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B]
          Length = 260

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 42/218 (19%), Gaps = 22/218 (10%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVT 54
           MS+ +    A +       +      N+ N +   Y R       +        +V    
Sbjct: 3   MSMYSALFGALS----TETRLNLSANNLANINTTGYKRDRVAFEDTFKRYAHDYHVDPRG 58

Query: 55  QRSENKNM-----------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
              E +               + +     A+                    +   +    
Sbjct: 59  DLREKEIFPRADLIAKPRLAMQTIDFSQGALQLTGNPLDLAIQGPGFFKVSNAGGTYYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKTVID-NAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                 S +       +  +          +       +   V        +   + + N
Sbjct: 119 NGAFHRSSQGMLVTDQDYPVLGNGGPIQIPDGRSFSVDATGAVYVDGGQVAQIDVVNVQN 178

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200
                     +  A    T  +  A     Q      +
Sbjct: 179 PDALRKYGANLYTAADGATVQEGPAEGGTTQVAQGYLE 216



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/188 (6%), Positives = 48/188 (25%), Gaps = 7/188 (3%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                +     + +  S           +          + +               +  
Sbjct: 69  ADLIAKPRLAMQTIDFSQGALQLTGNPLDLAIQGPGFFKVSNAGGTYYTRNGAFHRSSQG 128

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                      G+     + + ++ +       +             V  +     L +Y
Sbjct: 129 MLVTDQDYPVLGNGGPIQIPDGRSFSVDATGAVYVDGGQ---VAQIDVVNVQNPDALRKY 185

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             N           +      ++     +++ Y     V + EE+  +I+ ++++    K
Sbjct: 186 GANLY----TAADGATVQEGPAEGGTTQVAQGYLEKPNVEVVEEMVTMIETQRTFEAYQK 241

Query: 464 LIMFTDKM 471
           ++  ++++
Sbjct: 242 VMTNSNEL 249


>gi|196249721|ref|ZP_03148417.1| protein of unknown function DUF1078 domain protein [Geobacillus
          sp. G11MC16]
 gi|196210597|gb|EDY05360.1| protein of unknown function DUF1078 domain protein [Geobacillus
          sp. G11MC16]
          Length = 273

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +L   + A N  N   Q+  ++  NI N++   + RR+        
Sbjct: 1  MLRSMHTAANTMNALQQRLDTLSHNIANSNTTGFKRREASFAELLT 46



 Score = 50.8 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 66/255 (25%), Gaps = 4/255 (1%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           TL   +               +E     +D +             +      +  +++  
Sbjct: 21  TLSHNIANSNTTGFKRREASFAELLTQQVDHLPDDEAPRQTPAGMRYGNGAGLASTMLVT 80

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q  L E  R L  +F+  +                G     N     I   + +     
Sbjct: 81  AQGPLTETGRALDFAFAAANQWFRVRVTDGNGVATIGYTRAGNFSLTPIGGRLALVTS-D 139

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
             P        +          L+    L     +      +   V  I     L     
Sbjct: 140 GRPVLDETNAPIELPAHATDFQLSPTGTLTATDANGVVVARVNLGVTVIRRPQLLEALGD 199

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N         +           +   + +       V+L EEL  L+   ++Y ++ + I
Sbjct: 200 NFFTLPTAPGATQELNGNLRSQI--AMKQGALEQSNVDLGEELIGLMATTRAYQLNARAI 257

Query: 466 MFTDKMLQTLLEGVK 480
             +++ML  L+  ++
Sbjct: 258 SISEQMLG-LINNLR 271


>gi|303240290|ref|ZP_07326809.1| flagellar basal-body rod protein FlgC [Acetivibrio cellulolyticus
          CD2]
 gi|302592200|gb|EFL61929.1| flagellar basal-body rod protein FlgC [Acetivibrio cellulolyticus
          CD2]
          Length = 146

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          M   +  +   +       +  +I +NI NA+         Y R+  +   
Sbjct: 1  MGYFSSLDIGASGLTAQRLRMDTISQNIANANTTRTENGTAYRRKVVVFEE 51



 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
              Y     V++  E+  +I   +SY  +   I  T  M
Sbjct: 99  ENGYVEMPNVDILTEMVNMISATRSYEANVTSINTTKSM 137


>gi|304317904|ref|YP_003853049.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779406|gb|ADL69965.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 248

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 49/228 (21%), Gaps = 19/228 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTV--- 52
           +L     A +      +    +  NI N +   Y +                    V   
Sbjct: 1   MLRGLYTASSGMIAQQKIVDVLSNNIANVNTSGYKKDTVTTMAFPDFMVTRSGGDNVPYN 60

Query: 53  ---------VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                    V   + N N  +  +      +        F  +          + S T  
Sbjct: 61  GYIGNMDYGVLVETFNTNFSEGNIEKTDGKLDFAIDGSGFFTVSTPNGIRYTRDGSFTLN 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +    + + Y        +     D + +   N + + + V K+               
Sbjct: 121 SNGYLVTKDGYYVMGQNGPIQLNNGDISVDDFGNISLNGQTVNKLNIVDFSNYSTLRKEG 180

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                                +     ++  D ++  IS +       
Sbjct: 181 NNLFFTTGGQAIPASGAVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228



 Score = 43.5 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 56/255 (21%), Gaps = 15/255 (5%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            L                     +N   ++      +  + +            D+V   
Sbjct: 1   MLRGLYTASSGMIAQQKIVDVLSNNIANVNTSGYKKDTVTTMAFPDFMVTRSGGDNV--P 58

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
           +   +  M   ++      +   GN E   G             +          +  + 
Sbjct: 59  YNGYIGNMDYGVLVETFNTNFSEGNIEKTDGKLDFAIDGSGFFTVSTPNGIRYTRDGSFT 118

Query: 346 SNPSFLRDGGSVSKKFLWNVK---NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
            N +              N     N                +      +   +   TL +
Sbjct: 119 LNSNGYLVTKDGYYVMGQNGPIQLNNGDISVDDFGNISLNGQTVNKLNIVDFSNYSTLRK 178

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N           +             + + Y     VN  +E+  +I   ++Y  + 
Sbjct: 179 EGNNLFFTTGGQAIPAS----------GAVKQGYLEGSNVNPVDEMVTMISAMRTYEANQ 228

Query: 463 KLIMFTDKMLQTLLE 477
           K +   D+ L   + 
Sbjct: 229 KTVSAFDETLDKAVN 243


>gi|23012978|ref|ZP_00052943.1| COG4786: Flagellar basal body rod protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 213

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/198 (5%), Positives = 29/198 (14%), Gaps = 11/198 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKN 61
           +        +      +       N+ N     +  R             V   R  ++ 
Sbjct: 1   MNNTLLIGLSHQLALERAMEVAANNVANVTTTGFKSRSAEFREYLMPGARVEAARPSDRR 60

Query: 62  MFDKVLHAHSSAIGQQ--------RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +    +   ++ +             L      +    A               + +   
Sbjct: 61  L--SYVVDAATPLDLSVGQIERTGSPLDVALRDENAFFAVQTSGGERYTRNGAFQLNAAG 118

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
                    +  T             +   +               +             
Sbjct: 119 DLVTSDGYTVLGTAGPILFAKNTREISIGTDGTISTEQGPSGKLRLVQFADPERLVSAGG 178

Query: 174 NDAIKFKTASKHDAHDFL 191
           N            A    
Sbjct: 179 NLYQSSTPPRGAPASRLE 196


>gi|302387772|ref|YP_003823594.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1]
 gi|302198400|gb|ADL05971.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1]
          Length = 256

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + +      GV+  +E++ +I+ +++Y+ + K++  +D++ +  +  ++
Sbjct: 209 VVKRALEESGVDFAQEMTRMIEAQRAYSYALKMVQTSDEV-EATINTLR 256



 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/128 (7%), Positives = 34/128 (26%), Gaps = 13/128 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP----------ENVTV 52
           +   F            +   +  N+ N +   +  + ++ +                  
Sbjct: 1   MEQSFYIGALGALGQQTKLGIVSNNVANVNTVGFKAQYSVFSDLVHAEMRNTQGNNGAKS 60

Query: 53  VTQRSENK---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
            +    ++   +                   + F  LK+ ++ +  Y+      +S++ D
Sbjct: 61  GSGTKVDQTKTDFSAMPYKETGLEHDYAIAGEGFFMLKDPVTGEVSYSRDGRFQLSRMED 120

Query: 110 SLESYSKN 117
                + +
Sbjct: 121 KFYLVNSD 128


>gi|300854231|ref|YP_003779215.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM
           13528]
 gi|300434346|gb|ADK14113.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM
           13528]
          Length = 262

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 66/267 (24%), Gaps = 21/267 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----------ENVT 51
           +L     + +  N    +  SI  N+ N+D   Y + +                   +  
Sbjct: 1   MLRAIWNSVSAMNAQQDKLNSISNNLANSDTVGYKKENVEFNDLVYETLNRKGYPTNSNG 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDS 110
             T         + +       I Q  L        +           +           
Sbjct: 61  TNTINGTGVKATEWIRDNAQGPIQQTGLKTDMAIDGDGYFKVTLGNGTAAYERAGNFTVD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                 + + + L   +      +  +          +  D + +++ +   +   +   
Sbjct: 121 RNGNLVDSNGNKLEVNLTAEGSSLFNS--------GTVFKDNNFKVDEKTGQIYMNVGNQ 172

Query: 171 TVVNDAIKFKTASKHDAH-DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
           +V+   I    A   DA     D        +   I     +   +        G  + +
Sbjct: 173 SVLYGKINIYNAVGQDAMKSIGDNLYQPANNVQMNINTKAHIIQGSLEQSNVDLGREMTD 232

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDG 256
            +    +FE  +    TS+     I+ 
Sbjct: 233 MIMAQRSFELASKGLTTSDEMWGLINS 259



 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 75/247 (30%), Gaps = 15/247 (6%)

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            + ++K N          +   G   +SN  + +    +KA   IRD+     Q    + 
Sbjct: 31  TVGYKKENVEFNDLVYETLNRKGYPTNSNGTNTINGTGVKATEWIRDNAQGPIQQTGLKT 90

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
              + G    K  +   +            ++ +                  SN + L  
Sbjct: 91  DMAIDGDGYFKVTLGNGTAAYERAGNFTVDRNGN---------------LVDSNGNKLEV 135

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             +     L+N   +    +             + +               ++++  +  
Sbjct: 136 NLTAEGSSLFNSGTVFKDNNFKVDEKTGQIYMNVGNQSVLYGKINIYNAVGQDAMKSIGD 195

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           N     +    +     HI +       V+L  E++ +I  ++S+ +++K +  +D+M  
Sbjct: 196 NLYQPANNVQMNINTKAHIIQGSLEQSNVDLGREMTDMIMAQRSFELASKGLTTSDEMWG 255

Query: 474 TLLEGVK 480
            +    +
Sbjct: 256 LINSMKR 262


>gi|254503570|ref|ZP_05115721.1| conserved domain protein [Labrenzia alexandrii DFL-11]
 gi|222439641|gb|EEE46320.1| conserved domain protein [Labrenzia alexandrii DFL-11]
          Length = 243

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 58/221 (26%), Gaps = 7/221 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +     S +  ++ RN+ N +   Y   +                    + 
Sbjct: 1   MQSALYVALSAQVALSNRLETVSRNVANMNTAGYRADEINFAEMVSKAGPDKV--SFSSG 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSED 121
            +  +   + ++ +           E   A    N   +     +L  S +   K ++  
Sbjct: 59  GENYISRQNGSLNKTDNPLDLAIEGEAWFAIRDANGGLSYTRDGRLHISDDGTLKTVTG- 117

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              + V+    + +Q        +     D  +  E  +  +  FL          +   
Sbjct: 118 ---QVVVGAGGQPIQLNPDGGTPLITQNGDIIQGDEDIVGQIGLFLIPNDAKLTRKENSA 174

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                A   +   D    +   + G +         ++  S
Sbjct: 175 VVPDRAVIPVQVFDQHGIRQGYVEGANINPVREMTKMIMIS 215


>gi|126730135|ref|ZP_01745947.1| flagellar basal body rod protein [Sagittula stellata E-37]
 gi|126709515|gb|EBA08569.1| flagellar basal body rod protein [Sagittula stellata E-37]
          Length = 237

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 13/111 (11%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSENKNMFDKVLHAHSS 72
           ++   I  NI NA+   + +   + +          +V++   R    +     L    S
Sbjct: 17  REMQVIANNIANANTTGFRQEGMIFSEYLSEGDRLDSVSMAAGRIHKTSFAQGELEPTGS 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           A              E        N            S E        + +
Sbjct: 77  AYDLAIEG-------EGFFLVGTPNGERLTRAGAFSPSAEGLLVTPDGNPV 120


>gi|302874613|ref|YP_003843246.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
 gi|307690776|ref|ZP_07633222.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans
           743B]
 gi|302577470|gb|ADL51482.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B]
          Length = 254

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 53/232 (22%), Gaps = 20/232 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54
           ++     + +   +   +  SI  N+ NA+   Y             +     +      
Sbjct: 1   MIRALYTSLSGMISKEARMNSISNNLANANTVGYKSDDLILKSFDQVLLENRGKKNGEAH 60

Query: 55  QR------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
            R      S    + +     +   +           L +     +   N          
Sbjct: 61  VRNELGGLSLGVELDETYTDYNQGTLESTDSQTDLAILGDGFFTVERNGNKFYTRDGNFS 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
              + Y  N   D L     +         +     V  +     K            + 
Sbjct: 121 VDPQGYMVNSKGDYLLGNNGNRIYVANGKIDVKDNGVLTVDNGNTKVAY------NLDVV 174

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
           +    N  ++         +     +  + Q+  E   ++ +      M VY
Sbjct: 175 DFADKNTLVRNGDNLYSGGNPTAATKFNVKQRALEKSNVNVVNGMIEMMSVY 226


>gi|307945665|ref|ZP_07661001.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4]
 gi|307771538|gb|EFO30763.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4]
          Length = 246

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/173 (5%), Positives = 34/173 (19%), Gaps = 7/173 (4%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT--QRSENKNMFDKV 66
            A +  +    Q   +  N+ N +   +  +  +       V   T   R ++   + + 
Sbjct: 7   IALSRQSALRNQLNVVANNMANINTGGFKAQRLLFEEYVMPVAEATEFNRRDHDLFYVQD 66

Query: 67  LHAHS----SAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLSED 121
               +     +I             +        +                      ++ 
Sbjct: 67  YGTRTEFMPGSIKLTGNELDIAIEGDGFFVVQTADGGEAYTRNGGFTLDEAGQLVTPNDK 126

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            +                  +R+         +     ++            N
Sbjct: 127 PVLTEGGPINFTTADGKIDISRDGTISTELGVRGRIRVVNFDNPQNLVQMGDN 179


>gi|259417635|ref|ZP_05741554.1| flagellar basal-body rod protein FlgC [Silicibacter sp.
          TrichCH4B]
 gi|259346541|gb|EEW58355.1| flagellar basal-body rod protein FlgC [Silicibacter sp.
          TrichCH4B]
          Length = 130

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS  +   +   +     + +   +  NI NAD   Y R+       
Sbjct: 1  MSDFSKSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQAV 47


>gi|99082804|ref|YP_614958.1| flagellar basal body rod protein FlgC [Ruegeria sp. TM1040]
 gi|99039084|gb|ABF65696.1| Flagellar basal-body rod protein flgC [Ruegeria sp. TM1040]
          Length = 130

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS  +   +   +     + +   +  NI NAD   Y R+       
Sbjct: 1  MSDFSKSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQSV 47


>gi|146296278|ref|YP_001180049.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145409854|gb|ABP66858.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 146

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M +    N + +  +    +   I +NI NA+         Y R+  +   
Sbjct: 1  MGMFDAINISASALHAQRVRMDVIAQNIANANTTRTEDGTPYRRKIVVFEE 51



 Score = 36.9 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              Y N   V++  E+  +I+  ++Y  +   +  T  M+  + E 
Sbjct: 99  QNGYVNYPNVDIVTEMVNMIEASRAYEANVTAMNITKSMITRIFEI 144


>gi|220929470|ref|YP_002506379.1| flagellar basal-body rod protein FlgC [Clostridium cellulolyticum
          H10]
 gi|219999798|gb|ACL76399.1| flagellar basal-body rod protein FlgC [Clostridium cellulolyticum
          H10]
          Length = 147

 Score = 54.3 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M + +  + + +       +  +I +NI NA+         Y RRD +   
Sbjct: 1  MGIFSALDISASGLTAQRVRMDTISQNIANANTTRTTDGTPYRRRDVVFEE 51


>gi|260886629|ref|ZP_05897892.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC
          35185]
 gi|330839539|ref|YP_004414119.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC
          35185]
 gi|260863772|gb|EEX78272.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC
          35185]
 gi|329747303|gb|AEC00660.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC
          35185]
          Length = 147

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          MS+    + + +       +   I  NI NA+     +   Y RR  +  
Sbjct: 1  MSMFGGIDASASGLTAERLRMDVISNNIANANTTRSVEGGPYHRRYVVFQ 50



 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + Y     +N+ +E+  +I   ++Y  +   I     M Q  L  
Sbjct: 101 DGYVERPNINIVQEMVDMITASRAYEANVTAINAAKGMAQNALNI 145


>gi|297570257|ref|YP_003691601.1| protein of unknown function DUF1078 domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926172|gb|ADH86982.1| protein of unknown function DUF1078 domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 118

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 412 EKNRSDSHDLHMKSQVVFNHISES--YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 +  +     VV    +          V+L +E+  L+   + Y  + K++   D
Sbjct: 48  GTVEPRAEKIETPGPVVQEQTAAGPEMVEKSNVDLAQEMPNLMLSRRYYQANLKVVQSED 107

Query: 470 KMLQTLLEGV 479
           + L +LL   
Sbjct: 108 ERLGSLLNIK 117



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 16/50 (32%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
          ++   + A +      Q+ A+   N  N +   Y +            TV
Sbjct: 1  MVTGIHSALSGLLALQQKTAATAHNTANVNTDGYKKVRVTLHEGVAPGTV 50


>gi|323490140|ref|ZP_08095360.1| flagellar basal body rod protein FlgC [Planococcus donghaensis
          MPA1U2]
 gi|323396188|gb|EGA89014.1| flagellar basal body rod protein FlgC [Planococcus donghaensis
          MPA1U2]
          Length = 151

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 10/58 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KN----YVRRDTMTTISPE 48
          MSL   FN + +       +   +  NI NA+             Y R+    + S  
Sbjct: 1  MSLFTGFNISSSGLTANRLRMDVVSANIANANTNRAELVDGEWMPYRRKTVELSQSGT 58


>gi|225850286|ref|YP_002730520.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1]
 gi|225645268|gb|ACO03454.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1]
          Length = 238

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/183 (8%), Positives = 43/183 (23%), Gaps = 2/183 (1%)

Query: 20  QFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
           Q  +   N+ N +   + +     M+   PEN              D  +     A+ + 
Sbjct: 21  QLDTTSNNLANVNTPGFKKLLMREMSQTIPENKGNKKHLFVFPRFQDTPVILSQGALKKT 80

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                           +               + + Y  + + + L        +    +
Sbjct: 81  DNPLDIAIFGSGFFTIETGQGVFLTRSGHFLLNSDGYIVDPNGNYLLDREGKRIKLEESS 140

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL 197
             T  +  +  +          ++         +      +   A       FL+Q +  
Sbjct: 141 GITVNQNGEIFQKGKKVARINIVNYENIRHIGHSYYQGEGQEVPADYSLKQGFLEQSNTN 200

Query: 198 LQK 200
             +
Sbjct: 201 GIE 203


>gi|87306342|ref|ZP_01088489.1| FlgF [Blastopirellula marina DSM 3645]
 gi|87290521|gb|EAQ82408.1| FlgF [Blastopirellula marina DSM 3645]
          Length = 255

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                Y    GVN   E+  +I+ +++Y  +  LI   D+ML  L+  V
Sbjct: 203 QTRAGYLEGSGVNSITEMMTMIEAQRAYEANVNLIKNHDEMLGNLISRV 251



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/133 (7%), Positives = 27/133 (20%), Gaps = 30/133 (22%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTI--------------------SPENVTVVTQRSEN 59
           +   +  NI N D   + R   +                           V V     + 
Sbjct: 18  RVEVLANNIANVDTTGFKRDLAVLQARYSQAIEDGKDYPNSGSINDVGGGVYVSE---KV 74

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +    VL   +           F  +       +    +          + +      +
Sbjct: 75  TDYSRGVLKGTNVPTDLAIAGDGFFQV-------EIDGETYLTRAGNFTFTADGALVTPA 127

Query: 120 EDILGKTVIDNAE 132
            + +     +  +
Sbjct: 128 GNAVLDAEGEPVQ 140


>gi|326204628|ref|ZP_08194484.1| flagellar basal-body rod protein FlgC [Clostridium papyrosolvens
          DSM 2782]
 gi|325985195|gb|EGD46035.1| flagellar basal-body rod protein FlgC [Clostridium papyrosolvens
          DSM 2782]
          Length = 147

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M + +  + + +       +  +I +NI NA+         Y RR+ +   
Sbjct: 1  MGIFSALDISASGLTAQRVRMDTISQNIANANTTRTADGTPYRRREVVFEE 51


>gi|225871945|ref|YP_002753399.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791437|gb|ACO31527.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum
           ATCC 51196]
          Length = 262

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 52/214 (24%), Gaps = 3/214 (1%)

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
             G  ++   +   +      +      ++      +     +       F      D  
Sbjct: 51  TPGAAQSQQAVSAGLQIGLGTKSAATELIMTQGDLNQTNNPLDLAIQGQGFFQVQRPDGT 110

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +  +  +    Q       L        +    V                  +   
Sbjct: 111 LAYTRAGNFYLNNQGQVVDPQGDLLIPNITVPQNATAVTITQYGVVNATLPGQQNPQQLG 170

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS-QVVFNHISESYSNTVGVNLQE 446
              +A       L     N   +L    S +  L     Q     + + Y     V++  
Sbjct: 171 QIQLATFVNPGGLESTGSN--DYLATLSSGNAVLGNPGGQQGLGTLQQGYLENSNVDVVG 228

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               ++  +++Y  ++K+I   D M   +   V+
Sbjct: 229 AFVQMVLAQRAYESNSKVIKAADGMYSEVNNMVQ 262



 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/234 (7%), Positives = 51/234 (21%), Gaps = 17/234 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +  +       +I  N+ N+    +  R            V    ++++  
Sbjct: 1   MIRALYTAASGMSAQQMNLDTIANNLANSSTVGFRERQLQFQDMIYQNLVTPGAAQSQQA 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLR 108
                            L      + Q           +                     
Sbjct: 61  VSAGLQIGLGTKSAATELIMTQGDLNQTNNPLDLAIQGQGFFQVQRPDGTLAYTRAGNFY 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVV---QNFNTSAREVQKIRADADKEIELEISNLRR 165
            + +    +   D+L   +             +      +   +           + +  
Sbjct: 121 LNNQGQVVDPQGDLLIPNITVPQNATAVTITQYGVVNATLPGQQNPQQLGQIQLATFVNP 180

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              E T  ND +   ++      +   Q+ +   +   +   +  V      +V
Sbjct: 181 GGLESTGSNDYLATLSSGNAVLGNPGGQQGLGTLQQGYLENSNVDVVGAFVQMV 234


>gi|159045791|ref|YP_001534585.1| flagellar basal body rod protein FlgF [Dinoroseobacter shibae DFL
           12]
 gi|157913551|gb|ABV94984.1| flagellar basal-body rod protein FlgF [Dinoroseobacter shibae DFL
           12]
          Length = 238

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/120 (8%), Positives = 21/120 (17%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
             A +  N   ++   I  NI N     Y     + +   +            +   K+ 
Sbjct: 6   YTALSRQNALKREMTVIANNIANISTTGYRAEGLVFSEYVQATGHGQASISMTDSGAKIT 65

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
           +     + Q           +                                  L    
Sbjct: 66  NYSQGMLRQTGGSFDMAIEGDGFFQVAAPEGVRLTRAGAFEPDANGLLVTPDGYQLLDAG 125


>gi|289523576|ref|ZP_06440430.1| flagellar basal-body rod protein FlgC [Anaerobaculum
          hydrogeniformans ATCC BAA-1850]
 gi|289503268|gb|EFD24432.1| flagellar basal-body rod protein FlgC [Anaerobaculum
          hydrogeniformans ATCC BAA-1850]
          Length = 136

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M L      A +           I +N+ N +         Y R+  +   
Sbjct: 1  MRLFDSLEIAGSSLTAHRLWMDLISQNLANVNTTRTQDGGPYRRKVPIFAE 51


>gi|296534159|ref|ZP_06896653.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC
           49957]
 gi|296265514|gb|EFH11645.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC
           49957]
          Length = 248

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 19/127 (14%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------SPENVTVVTQRSE 58
            +      +  A++  NI NAD   Y     +                   V     R+ 
Sbjct: 9   LSRLAAQQRATAALAMNIANADTPGYKSAQMVFGAHIDRQLGVDAPRGGREVAFSQDRAT 68

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
            ++     L A  + +             E   A    N        +   S E    ++
Sbjct: 69  WRDFTPGSLQATGNPLDLALGG-------EGFFAVQTGNGERYTRAGRFALSPEGGIVDI 121

Query: 119 SEDILGK 125
             + +  
Sbjct: 122 GGNPVLN 128


>gi|147678402|ref|YP_001212617.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI]
 gi|146274499|dbj|BAF60248.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI]
          Length = 264

 Score = 54.3 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/192 (8%), Positives = 41/192 (21%), Gaps = 30/192 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A    +    +  S+  N+ NA    Y R D                      
Sbjct: 1   MIRGLYSAAAGMDVLQARVESVSNNLANASTPGYKREDITIRSFPEMLLIRQGGIQRKPA 60

Query: 44  ---TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                       V       +     L              +F A+       +  +   
Sbjct: 61  GTPEAIGTASNGVLLSELFIDHTQGDLRETGDPADVAIKGPAFFAV--SAPGPESPDRVC 118

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVID------NAEEVVQNFNTSAREVQKIRADADK 154
                  +   E Y        +     +         +  +   +    V+    +A +
Sbjct: 119 YTRNGAFKIDQEGYLVTAGGYRVLGEDGEIRIEDFQLNDPARLSISPDGSVRIDGMEAGR 178

Query: 155 EIELEISNLRRF 166
            + +E  ++   
Sbjct: 179 LMLVEFDDVNSL 190



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            V + + + Y     VN+ +E+  LI   ++Y  + ++I   D++L   +  V
Sbjct: 208 AVSSSVCQGYLEAPNVNVVDEMVSLITATRAYEANQRIIQSQDELLAKAVNQV 260


>gi|257871308|ref|ZP_05650961.1| flagellar basal-body rod protein flgG [Enterococcus gallinarum EG2]
 gi|257805472|gb|EEV34294.1| flagellar basal-body rod protein flgG [Enterococcus gallinarum EG2]
          Length = 260

 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 41/172 (23%), Gaps = 23/172 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------------- 44
           M++  +   +++  N+      +   NI N +   Y  + T                   
Sbjct: 1   MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60

Query: 45  -ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             +    ++  + +   +     L   +  +        F  +++               
Sbjct: 61  NTAQYGASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQL------LLSR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 S      N     +  T      +       +     ++  + + +
Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQ 166



 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 5/248 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L       +N  + N  T  +    +  +G    +    A+ +  I A   + +     +
Sbjct: 6   LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNTAQY 65

Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                                     +       F     +     L +  +  +  N Q
Sbjct: 66  GASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++  +     +      W                +   +  +   +       T  E 
Sbjct: 126 LVNSEGYPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                  L      +      +   F  + +       V+L   ++ L+  +++Y ++ K
Sbjct: 184 ITPVGNQLYSAGDQALLTSQTNPAAFGSVLQGQLVQSTVDLATSMTDLLTTQRAYGLNTK 243

Query: 464 LIMFTDKM 471
            +   D+M
Sbjct: 244 AMQTADEM 251


>gi|296133051|ref|YP_003640298.1| flagellar basal-body rod protein FlgC [Thermincola sp. JR]
 gi|296031629|gb|ADG82397.1| flagellar basal-body rod protein FlgC [Thermincola potens JR]
          Length = 145

 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M +   F+ + +       +   I  NI N +         Y R+  +   
Sbjct: 1  MGMFDSFDISASGLTAQRLRMDLISENIANVNTTRTASGGPYRRKLAVFEA 51



 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           + Y     VN+  E+  +I   ++Y  +   I  T +M    +E  +
Sbjct: 99  QGYVEMPNVNIVTEMVDMISATRAYEANVASIRATKEMFAKAMEIGR 145


>gi|315121852|ref|YP_004062341.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495254|gb|ADR51853.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 243

 Score = 53.9 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 9/121 (7%), Positives = 35/121 (28%), Gaps = 1/121 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-QRSENKN 61
           + + FN   +      ++ +++  NI N++   +       +    ++     Q+     
Sbjct: 1   MQSSFNIGLSAQIALEKRLSTVADNISNSNTSGFRAIKVKFSEVINSIKNDIDQKISFVA 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             ++ L   + ++        F    +   +             + +   +    + S  
Sbjct: 61  QGNEYLSKQNGSLTNTGGELDFALEGDAWFSLQTPRGIILTRDGRFKIREDGTLISSSGR 120

Query: 122 I 122
            
Sbjct: 121 Y 121


>gi|182412222|ref|YP_001817288.1| hypothetical protein Oter_0398 [Opitutus terrae PB90-1]
 gi|177839436|gb|ACB73688.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1]
          Length = 249

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 63/250 (25%), Gaps = 8/250 (3%)

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                ++  +    TV        + G    +   S  P G++++  +            
Sbjct: 7   QSASSLSALERWQETVAQNITSSQVTGYRKRTINFSTQPAGELQSDPRRPVGSEAGVPTL 66

Query: 290 LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
             ++   +     E  P   + +          ++  D       +    V         
Sbjct: 67  FPKVNSGINFVSGETQPTRRDFDVAIQGDGFFQVRRPDGSFAYTRNGEFHVRADRTLVTG 126

Query: 350 FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              +  +     +  + N        +              V     N  L+        
Sbjct: 127 TGDEVLNAGGGPITFLPNGDQVAINTDGSIFQGETPVANMSVQRFADNAQLIPMPNGYFV 186

Query: 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                  ++             + + Y     V    E+  L+ + ++Y  + ++I   D
Sbjct: 187 PAAGMAPEAVTQPE--------LLQGYLENSNVTPLREMVDLVIISRAYEANQRMITTLD 238

Query: 470 KMLQTLLEGV 479
           + +Q  L+ +
Sbjct: 239 QQMQKALDML 248



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/216 (5%), Positives = 42/216 (19%), Gaps = 22/216 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           +     ++ +  +   +   ++ +NI ++    Y +R    +  P        R    + 
Sbjct: 1   MNIGLYQSASSLSALERWQETVAQNITSSQVTGYRKRTINFSTQPAGELQSDPRRPVGSE 60

Query: 62  ---------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                                               F  +           +       +
Sbjct: 61  AGVPTLFPKVNSGINFVSGETQPTRRDFDVAIQGDGFFQV------RRPDGSFAYTRNGE 114

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                +      + D +          +      +      I         + +      
Sbjct: 115 FHVRADRTLVTGTGDEVLNAGGGPITFLPNGDQVAINTDGSIFQGETPVANMSVQRFADN 174

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
              + + N           +A    +     L+  +
Sbjct: 175 AQLIPMPNGYFVPAAGMAPEAVTQPELLQGYLENSN 210


>gi|254562217|ref|YP_003069312.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens
           DM4]
 gi|254269495|emb|CAX25461.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens
           DM4]
          Length = 246

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/186 (5%), Positives = 28/186 (15%), Gaps = 6/186 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +     +++   I  N+ N     +  R          V        +   
Sbjct: 1   MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60

Query: 63  FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              V+            +             +   A                        
Sbjct: 61  LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +            +     A +         +     ++       +    N  
Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGANLF 180

Query: 177 IKFKTA 182
                A
Sbjct: 181 SSEAPA 186


>gi|253682153|ref|ZP_04862950.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str.
           1873]
 gi|253561865|gb|EES91317.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str.
           1873]
          Length = 262

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/166 (6%), Positives = 34/166 (20%), Gaps = 31/166 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     +++       +  +I  N+ N+    Y R D                      
Sbjct: 1   MLRSIWNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQ 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                +   V       +N       L   ++        + +  + +          + 
Sbjct: 61  GKLQVTGGGVKSTEIERDN---AQGNLLQTNNNTDLAIDGKGYFKVVD------GEGRTL 111

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                           + + + L     +  +        +     
Sbjct: 112 YTRGGSFNIDPSGTVVDKNGNRLVILNENGIDVNTGRAGFTKESFN 157



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 78/253 (30%), Gaps = 6/253 (2%)

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
             +  G          I+    NS TV  +   +  + ++  +      P  K +  LQ+
Sbjct: 6   WNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQGKLQV 65

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
               V   + + D     L+ + +  D             +    + L  +      +  
Sbjct: 66  TGGGVKSTEIERDNAQGNLLQTNNNTDLAIDGKGY--FKVVDGEGRTLYTRGGSFNIDPS 123

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   N   + +   +             +    + Y  S     +  P+     + 
Sbjct: 124 GTVVDKNGNRLVILNENGIDVNTGRAGFTKESFNVSEDGYLRSDKHRGLRIPIYDTIGDN 183

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           ++     N    L    +  +D+          + + ++    V+L +E++ LI  ++++
Sbjct: 184 SMKSIGENLYTPL-IQGNGRNDVIESKDF---SLLQGFTEQSNVDLGKEMTDLIVTQRAF 239

Query: 459 NISNKLIMFTDKM 471
            +++  +   D+M
Sbjct: 240 QLNSSALKTADEM 252


>gi|218508323|ref|ZP_03506201.1| probable flagellar basal body rod protein [Rhizobium etli Brasil
          5]
 gi|327191050|gb|EGE58103.1| putative flagellar basal body rod protein [Rhizobium etli
          CNPAF512]
          Length = 100

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
          MS+  + N A +       +  +I  N+ N+    Y R +T  T +   V  
Sbjct: 1  MSISGITNIALSGMRAQMTRIGAIANNVANSSTPGYARLNTSLTSTEPGVQA 52



 Score = 40.8 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNR-SDSHDLHMKSQVVFNHISESYSNTVGV 442
                  ++G+   +T +    N++        +  +     ++     I E    T  V
Sbjct: 4   SGITNIALSGMRAQMTRIGAIANNVANSSTPGYARLNTSLTSTEPGVQAIVEPT--TSDV 61

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +   EL+ +I+ EQ+Y  +  +      M + L+   +
Sbjct: 62  DPATELTEMIEAEQAYKANAAVFETGADMWEMLMSIKR 99


>gi|212640499|ref|YP_002317019.1| flagellar basal body rod protein [Anoxybacillus flavithermus WK1]
 gi|212561979|gb|ACJ35034.1| Flagellar basal body rod protein [Anoxybacillus flavithermus WK1]
          Length = 262

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/247 (6%), Positives = 51/247 (20%), Gaps = 44/247 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------------------------- 37
           +      A +   +  ++   +  NI NA+   Y                          
Sbjct: 1   MFRGLYTAASGMLSQQRRIEMMTNNIANANTPGYKADQASLRAFPEMLMHRIQQTTIPTE 60

Query: 38  -----RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                R  T        V V        N     +    +      +  +  +     + 
Sbjct: 61  KKLTWRDRTYIGPLSTGVYVQE---LVPNFAQGDIRETGNNTDMAIVDGTGTS---FFTV 114

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS--------ARE 144
            +                 + +        +     +  +   + F             +
Sbjct: 115 QNETGEVRYTRNGHFTIDADGFLTTTDGLYVLDETGNRIQVGDEQFTVLEDGTITKNGGQ 174

Query: 145 VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           + ++R    + ++  +            +  A  +    +H     +D    +   +S  
Sbjct: 175 IARLRIAYAENVQTLMKEGNGLFRAEQQLPPAETYTIRQQHIERSNVDLSRTMTDMLSAY 234

Query: 205 IGISTIV 211
                  
Sbjct: 235 RAFEANQ 241



 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/253 (6%), Positives = 64/253 (25%), Gaps = 12/253 (4%)

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
            +   +          +  + +  ++  G    +  ++A  ++    +       ++   
Sbjct: 5   LYTAASGMLSQQRRIEMMTNNIANANTPGYKADQASLRAFPEMLMHRIQQTTIPTEKKLT 64

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
               ++                  A G                     +           
Sbjct: 65  WRDRTYIGPLSTGV-YVQELVPNFAQGDIRETGNNTDMAIVDGTGTSFFTVQNETGEVRY 123

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
           + +  F  +        D +    ++ N+  + D    +  + T+ +             
Sbjct: 124 TRNGHFTIDADGFLTTTDGLYVLDETGNRIQVGDEQFTVLEDGTITKNGGQIARLRIAYA 183

Query: 416 SDSHDLHMKSQVVFN-----------HISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            +   L  +   +F             I + +     V+L   ++ ++   +++  + K+
Sbjct: 184 ENVQTLMKEGNGLFRAEQQLPPAETYTIRQQHIERSNVDLSRTMTDMLSAYRAFEANQKI 243

Query: 465 IMFTDKMLQTLLE 477
           +   DK +     
Sbjct: 244 LQAYDKSMDKAAN 256


>gi|188586015|ref|YP_001917560.1| flagellar basal-body rod protein FlgC [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350702|gb|ACB84972.1| flagellar basal-body rod protein FlgC [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 146

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISP 47
          +   F+ + +       +   I  NI NA+         Y R+  +     
Sbjct: 1  MFDTFDISGSGLTAERLRMDVISNNIANANTTRTEDGEPYRRQMPVFETRG 51


>gi|119384843|ref|YP_915899.1| flagellar basal body rod protein FlgC [Paracoccus denitrificans
          PD1222]
 gi|119374610|gb|ABL70203.1| flagellar basal body rod protein [Paracoccus denitrificans
          PD1222]
          Length = 130

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 3  LLAVFNK---AQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43
          +    +    A +   + + +   I  NI NAD   Y R+    
Sbjct: 1  MTNSLSATELAVSGMKSQAVRLRHISENIANADTPGYRRKLVAF 44


>gi|289578436|ref|YP_003477063.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          italicus Ab9]
 gi|297544712|ref|YP_003677014.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|289528149|gb|ADD02501.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          italicus Ab9]
 gi|296842487|gb|ADH61003.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
          Length = 147

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+L +  + + +       +   I +NI N +  
Sbjct: 1  MNLFSSMDISASGLTAERVRMDVISQNIANVNTT 34



 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E+  +I   ++Y  +      +  M Q  LE  +
Sbjct: 99  QNGYVEYPNVNIVSEMVDMISATRAYEANVTAFNASKAMFQKSLEIGR 146


>gi|15616299|ref|NP_244604.1| flagellar hook-basal body protein [Bacillus halodurans C-125]
 gi|10176361|dbj|BAB07456.1| flagellar hook-basal body protein [Bacillus halodurans C-125]
          Length = 280

 Score = 53.9 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 3/153 (1%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                ++ +        +      G  ++    +    L     L     +  N      
Sbjct: 128 TANPNNDNLLQLVTQNGDYLLDSAGNRINIPATFEEITLTDQGTLQVTMPNGANVQAAQL 187

Query: 390 PVAGINTNVTLLEYARNS--IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEE 447
            +  +     L     N   +  L       ++++         + +       V++  E
Sbjct: 188 QLIQVMKPQLLEAVGGNMFQLPDLAALGFAENEVYAAVGAGGGAVVQGTLEGSNVDIGRE 247

Query: 448 LSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++ LI+ +++Y  + + +   D+M+  L+ G++
Sbjct: 248 MTDLIETQRNYQFNARSVSMADQMMG-LVNGLR 279



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/178 (8%), Positives = 51/178 (28%), Gaps = 26/178 (14%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTTI-------------------SPENVTVVTQRSE 58
            ++  ++  NI N++   Y RR+   +                    +P  + V +    
Sbjct: 16  QKKLDTLSHNIANSNTTGYKRREASFSDLLFQQVNTNKATQYETGRLTPNGIRVGSGAKV 75

Query: 59  NKNMFD-KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           ++     +     ++       + +  +  E+ +  D    +               + N
Sbjct: 76  SQTALRMEQGTLTTTDRALDFAIANPSSFFEIETVVDGNPVTRLTRDGAFY-----LTAN 130

Query: 118 LSEDILGKTVIDNAEEVVQNFNT-SAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            + D L + V  N + ++ +                  +  L+++       +   + 
Sbjct: 131 PNNDNLLQLVTQNGDYLLDSAGNRINIPATFEEITLTDQGTLQVTMPNGANVQAAQLQ 188


>gi|167463160|ref|ZP_02328249.1| flagellar basal-body rod protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383080|ref|ZP_08056907.1| flagellar basal-body rod-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152742|gb|EFX45368.1| flagellar basal-body rod-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 297

 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 38/150 (25%), Gaps = 15/150 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++  +   NI N +   Y +   ++            RS  + +
Sbjct: 1   MLRGLYTASSGMIAQQRKHDTATNNIANMNTPGYKQSTALS------------RSFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +     +      RL       + +               +    ++ S  +      
Sbjct: 49  ISRFRDDETGTQQVGRLHTGVLMEENVAI---PVQGVIEETRNPFDFAIVSDLQVPGAAF 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
            G  +  N +        +   V+    + 
Sbjct: 106 NGAGIYVNEDGETIYKPQAYFMVENQAGEI 135



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           I + +     V+  + +  ++   ++Y  + K++ F DK L+  + 
Sbjct: 247 IRQGFVEQSNVDPTQVMVDMMSALRAYEANQKMVQFYDKSLEKTVN 292


>gi|254519397|ref|ZP_05131453.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA]
 gi|226913146|gb|EEH98347.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA]
          Length = 257

 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 27/113 (23%), Gaps = 16/113 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------N 49
           +L      +   N    +  +I  NI N+    Y + D                     +
Sbjct: 1   MLRTLWTGKTGMNANQDKLDAISNNIANSTTMGYKKIDVGFKDLLTESLDRNGIPLNDKD 60

Query: 50  VTVVTQRSENKNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
             + T    ++   D     L     +         +  +      + +  + 
Sbjct: 61  SVIGTGTRTSEWFRDNSQGMLQETLRSTDLSIDGLGYFKIISDNGQEAYTRDG 113



 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +     I +       V++  E S +I  ++++ +S++ +   D+M   +   
Sbjct: 199 EVQRTTDFDIYQGSLEGSNVDIATEFSEMILTQRAFELSSRGVKTADEMWGMINNM 254


>gi|149183417|ref|ZP_01861850.1| FlhP [Bacillus sp. SG-1]
 gi|148848862|gb|EDL63079.1| FlhP [Bacillus sp. SG-1]
          Length = 278

 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 27/299 (9%)

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
            + +  +    Q D++   ++         R      +     + L      +       
Sbjct: 7   GATNTLNQLQKQMDIIGHNLANSDTNGYKRREAMFSELLFQQVSNLKGEKDANTRLTP-- 64

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                     I        +     + +G +KA  +  D  +         + +   G+ 
Sbjct: 65  --------GGIRQGVGAKLAQSEINLAQGALKATGRSLDFALTSRNQFFKVLVQGEDGAD 116

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                        P       + +         ++      +   N   +  G S     
Sbjct: 117 VRYTRDGA-FYANPIGNGEMMLVNGQGHAVLDENDNFITFTEAEMNSQDISLGDSGQLTI 175

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                NL         +     +N +  P       V   E   +  G L  N       
Sbjct: 176 GGTPFNLGIVSVEKPQFMQQVGQNLLGLPDDLQGFGVNENEILTSLEGALRDNIG----- 230

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                     +++S      V++ +E++ ++ V+++Y   ++ I   D+M+  L+ G++
Sbjct: 231 ----------LAQSTLEGSNVDIGKEMTDMLNVQRAYQFQSRSISMADQMMG-LINGIR 278



 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +      A N  N   +Q   I  N+ N+D   Y RR+ M +  
Sbjct: 1  MNRTMIGATNTLNQLQKQMDIIGHNLANSDTNGYKRREAMFSEL 44


>gi|183220163|ref|YP_001838159.1| flagellar basal body rod protein FlgC [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189910283|ref|YP_001961838.1| flagellar basal body rod protein FlgC [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167774959|gb|ABZ93260.1| Endoflagellar proximal basal body rod protein [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778585|gb|ABZ96883.1| Flagellar basal-body rod protein FlgC [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 153

 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44
          M +    N +    +    +   I  NI N+    +      + R   + T
Sbjct: 1  MGMFDSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVILT 51



 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            Y     +N+  E++ +I   +SY  + +LI  +  M+   +E  +
Sbjct: 107 GYVELPNINIVTEMTDMISASRSYEANVQLINGSKAMMNKAMEIGR 152


>gi|319781687|ref|YP_004141163.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167575|gb|ADV11113.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 240

 Score = 53.5 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/205 (7%), Positives = 47/205 (22%), Gaps = 2/205 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  +I  N+ NA    +                 +    +   
Sbjct: 1   MRDSLYVALSSQIALERRLDTIADNVANASTIGFRATGVKFEDVVSGTGQKSVSFASPG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L     A+ +      F    +   A +    +      +   +      ++    
Sbjct: 60  -KTYLSGAHGALSETGNPFDFAIQGDAWFAIETPVGTVMTRDGRFSMNENGELMSIEGHP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +        +   +N    A     +R +      + + N     + +   N  I     
Sbjct: 119 VLDAGGSPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGANFVRYGNSGIVPART 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207
            +               + S +  +
Sbjct: 179 PEPVTDRSDIGVAQGFLEESNVNPV 203


>gi|121533765|ref|ZP_01665592.1| flagellar basal-body rod protein FlgC [Thermosinus
          carboxydivorans Nor1]
 gi|121307756|gb|EAX48671.1| flagellar basal-body rod protein FlgC [Thermosinus
          carboxydivorans Nor1]
          Length = 143

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M L    + A +       +   I  NI NA+     +   Y R+  +  
Sbjct: 1  MGLFTAIDAAASGMTAERLRMDVISNNIANANTTRTPEGGPYRRQMVIFQ 50



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-----HISESYSNTVGVNLQEELS 449
               +  +     +  +              + VF+       +  Y     VN+  E+ 
Sbjct: 53  AGQNSFADLLSGKVENVGVRVVGIVKDEAPFRQVFDPNHPDANAAGYVAMPNVNIIAEMV 112

Query: 450 FLIKVEQSYNISNKLIMFTDKM 471
            ++   ++Y  +   I     M
Sbjct: 113 DMMTAARAYEANVTAINAAKSM 134


>gi|121534935|ref|ZP_01666754.1| protein of unknown function DUF1078 domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306534|gb|EAX47457.1| protein of unknown function DUF1078 domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 247

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             + +       VN+  E+  LI   ++Y I+ K++   D++L   + 
Sbjct: 195 GQVRQGVLELANVNVVAEMVNLIAGYRAYEINAKMVQTHDQLLDKAVN 242


>gi|116252321|ref|YP_768159.1| hypothetical protein RL2575 [Rhizobium leguminosarum bv. viciae
          3841]
 gi|115256969|emb|CAK08063.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 101

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSEN 59
          MS+  + + A +     + + ++I  NI N+    Y R +T  T   P  V  V   + +
Sbjct: 1  MSISGIASTALSGMRAQTTRVSAIANNIANSSTPGYARLNTSLTSVEPGGVQAVVSPTAS 60

Query: 60 K 60
           
Sbjct: 61 D 61


>gi|306820111|ref|ZP_07453759.1| flagellar basal-body rod protein FlgC [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551889|gb|EFM39832.1| flagellar basal-body rod protein FlgC [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 145

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
          MS+ +  N           +   I +NI NA          Y R+  + 
Sbjct: 1  MSIFSGMNINATALTAERLRMDIISKNIANAQTTRTKNGLPYKRQVAVF 49



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              Y     V L  E+  +I  +++Y  +   +  +  MLQ  ++ 
Sbjct: 98  ENGYVKMPNVELITEMVDMITAQRAYEANATAVNTSKAMLQKAIDI 143


>gi|254485520|ref|ZP_05098725.1| flagellar basal-body rod protein FlgC [Roseobacter sp. GAI101]
 gi|214042389|gb|EEB83027.1| flagellar basal-body rod protein FlgC [Roseobacter sp. GAI101]
          Length = 130

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 1   MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
           MS  +   + + +     + +   +  NI NAD   Y R+      +        +    
Sbjct: 1   MSDFSNALDVSSSGLRAQANRLRHLSENISNADTPGYRRKLVSFQTAFSLGDAPAKVQTG 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           K   D+           +++      L +     D  N +    ++  +++  SY  N
Sbjct: 61  KVHLDQ--------TALEKVYDPAHPLADDTGQYDGSNVNLLIELADAKEAQRSYEAN 110


>gi|209964689|ref|YP_002297604.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW]
 gi|209958155|gb|ACI98791.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW]
          Length = 240

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/121 (7%), Positives = 31/121 (25%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  V   A +      +Q   +  NI N +   +  +  +     E      +R      
Sbjct: 1   MENVLYIALSRQEAMRRQMDVVANNIANMNTSGFKSQRPLFLEYLERPDRRQERMSFVQD 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           +  + +  +  +             +   A +             + + +    + +   
Sbjct: 61  YGLMRNLQAGPVTVTDNPLDVALRGDGYFAVETLAGPRYTRAGGFQLNTDRELVDRNGLP 120

Query: 123 L 123
           +
Sbjct: 121 V 121


>gi|89056688|ref|YP_512139.1| flagellar basal body rod protein FlgC [Jannaschia sp. CCS1]
 gi|88866237|gb|ABD57114.1| flagellar basal-body rod protein FlgC [Jannaschia sp. CCS1]
          Length = 130

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
              + A +     +Q+   +  NI NAD   Y R+ T   +      V  Q        
Sbjct: 5  SNALSVAASGMRAQTQRLTHVSENIANADTPGYQRKITSFEVERGFSAVEGQVRTGPVRL 64

Query: 64 DK 65
          D+
Sbjct: 65 DQ 66


>gi|20807891|ref|NP_623062.1| flagellar basal body rod protein [Thermoanaerobacter
          tengcongensis MB4]
 gi|20516456|gb|AAM24666.1| Flagellar basal body rod protein [Thermoanaerobacter
          tengcongensis MB4]
          Length = 146

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
          M+L +  + +         +   + +NI NA+         Y R+  + 
Sbjct: 1  MNLFSSMDISATGLTAERVRMDVVSQNIANANTTRTVQGGPYRRKLVVF 49



 Score = 40.4 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            + Y +   VN+  E+  +I   ++Y  +         M Q
Sbjct: 99  QQGYVSYPNVNIVAEMVDMISATRAYEANVTAFNAAKSMFQ 139


>gi|325288804|ref|YP_004264985.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964205|gb|ADY54984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 256

 Score = 53.5 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 46/193 (23%), Gaps = 6/193 (3%)

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
           ++     +   V P        +       F         S+    + I+          
Sbjct: 45  ELSKSRAMYGGVAPGIAADQTALPVYNGNRFDFSQGTLVQSDQPQNMAISGEGFFQVAAA 104

Query: 331 CQGISETICVNPQYRSNPSFLRDGGS----VSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
                 T   N     N   +   G      ++          G    I    D      
Sbjct: 105 NGRTGYTRAGNFGPDGNGRIVNPQGLLLELGAEIPENASDLSIGSDGKITAVVDDELTEL 164

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +A       L +   +   +LE ++S            F  I          +  +
Sbjct: 165 GQLTLARFENPHGLQQAGDDI--YLETDQSGPPLTGNPGTEGFGQIQGGMLERSNTDTAK 222

Query: 447 ELSFLIKVEQSYN 459
            +S +I+ +++Y 
Sbjct: 223 AMSNMIEAQRAYQ 235



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/122 (8%), Positives = 24/122 (19%), Gaps = 15/122 (12%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTT------------ISPENV--TVVTQRSENKNMF 63
             +   +  N+ NA+   + ++                      V   +   ++      
Sbjct: 12  QSRLDMVGNNLANANTTAFKQQLLSEEEGMDTQELSKSRAMYGGVAPGIAADQTALPVYN 71

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN-SPTHYISKLRDSLESYSKNLSEDI 122
                     + Q    Q+     E        N  +                 N    +
Sbjct: 72  GNRFDFSQGTLVQSDQPQNMAISGEGFFQVAAANGRTGYTRAGNFGPDGNGRIVNPQGLL 131

Query: 123 LG 124
           L 
Sbjct: 132 LE 133


>gi|332799171|ref|YP_004460670.1| flagellar basal-body rod protein FlgC [Tepidanaerobacter sp. Re1]
 gi|332696906|gb|AEE91363.1| flagellar basal-body rod protein FlgC [Tepidanaerobacter sp. Re1]
          Length = 143

 Score = 53.5 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51
          M      + + +       +  +I  NI NA+     +   + R   +        +
Sbjct: 1  MGFFNSLDISASGLTAQRLRLDTISNNIANANTTRTEEGGPFQRERVVFQERNTTGS 57


>gi|291288218|ref|YP_003505034.1| flagellar basal-body rod protein FlgC [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290885378|gb|ADD69078.1| flagellar basal-body rod protein FlgC [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 134

 Score = 53.5 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          MS   V   A    +    + ++I  N+ NA+         YVR+D +     E      
Sbjct: 1  MSFFDVLGVAGTGMSAQRIRISAISANLANANTTRTDDGGPYVRQDVIFKQVLEGELAGG 60

Query: 55 Q 55
           
Sbjct: 61 V 61



 Score = 36.5 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 4/26 (15%), Positives = 14/26 (53%)

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKM 471
           EE+  +++  +SY  +  ++    ++
Sbjct: 99  EEMVNMLEASKSYEANTTVVSTAKQL 124


>gi|313895871|ref|ZP_07829425.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312975296|gb|EFR40757.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 151

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M +    + A +       +   I  NI NA+         Y RR  +  
Sbjct: 1  MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQ 50



 Score = 40.0 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           E Y     VN+  E+  +I   + Y  +   I     M+   L
Sbjct: 103 EGYVERPNVNIVSEMVDMISASRGYEANATTINAAKSMVNAAL 145


>gi|225849134|ref|YP_002729298.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644137|gb|ACN99187.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 237

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 39/164 (23%), Gaps = 2/164 (1%)

Query: 20  QFASIVRNIENADNKNYVRR--DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
           Q  +I  NI NA+   + +     ++   PENV             D  +  +  A+ + 
Sbjct: 21  QLDTITNNIANANTSGFKKILMREISQKIPENVGQTGDLLVFPRFRDTPVINNQGALIKT 80

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQN 137
                     E     +               + E +  + +   +  T     +     
Sbjct: 81  DNPLDVAIEGEGFFNVETNVGRFYTRNGHFSINNEGFLVDQNGGYILDTNRQRIKLDTNG 140

Query: 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 + +  +          ++            N   +   
Sbjct: 141 RVDITTKGEIYQNGRLVATLRVVNLQNLQPVGNGYYNGQEQATE 184


>gi|167590742|ref|ZP_02383130.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu]
          Length = 262

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 53/246 (21%), Gaps = 10/246 (4%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----------SENKNMF 63
              AS     I  NI NA+   + +     +    N    +            S ++   
Sbjct: 1   MAGASNNLDVIGNNIANANTVGFKQSRAHFSDMYANSVATSVNTQIGIGTGLASIDQQFG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              ++   +A+        F  +          + +     +         +        
Sbjct: 61  QGTINTTGNALDVAINGNGFFQMSNNGVVTYSRDGTFHRDKNGFIVDSHGRNLMGYNATA 120

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
           G  +   A   +Q   T+       R      +  +           T         +  
Sbjct: 121 GGVINTAATVPMQAPTTNLAPTATTRITGQFNLNSQDKVPVTTPFSATDNTTYNYMTSIQ 180

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
            +D+     Q D+   K        T            +   T+       I      + 
Sbjct: 181 VYDSLGGAQQVDMYFVKNGAPAPAGTWQAYAGVKGQTPTSLGTISFNTSGQIASTTPAAP 240

Query: 244 TVTSES 249
              S  
Sbjct: 241 VTGSTG 246


>gi|260574402|ref|ZP_05842406.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2]
 gi|259023298|gb|EEW26590.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2]
          Length = 236

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 4/117 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   +  NI N     + R   +     + +      S   +   + +   
Sbjct: 12  QSGLM---REMQVVANNIANISTTGFRREGVVFAEYVKRMDGEPSLSMA-HATARNIDLG 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
            ++I Q      F    +     +               S E    N     L    
Sbjct: 68  QASISQTGGAFDFAIQGDGFFLIETPQGQRLTRAGSFTPSAEGELVNPDGFRLLDQG 124


>gi|94266975|ref|ZP_01290624.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93452330|gb|EAT02961.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 118

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTV 52
          +++    A +      Q+ ++   N+ N +   Y +       +  P  V  
Sbjct: 1  MVSGIQAALSGLQALQQKNSATAHNVANVNTDGYKKVKVSLAETTPPGGVEA 52



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 412 EKNRSDSHDLHMKSQVVFNHISES--YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
               + +  +      V    ++         V+L EE+  ++   + +  + K++   D
Sbjct: 48  GGVEARAEKIDTPGPQVSEQTADGPELVEKSNVDLAEEMPNMMLSRRYFQANLKVVQTED 107

Query: 470 KMLQTLLEGV 479
           + L  LL   
Sbjct: 108 ERLGNLLNIK 117


>gi|255024636|ref|ZP_05296622.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J1-208]
          Length = 219

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%)

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                           +      N  P+  +     +  + +KN  +      ++ +   
Sbjct: 2   QSASLYQSGALGQALNLFGTPGKNT-PSDNLDNFFTAWAALAKNPDQATNTTALLSSMSI 60

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
                N     ++++      + +  I +L   + +L  +N AI    A  +  +D L+Q
Sbjct: 61  FTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSINKAI--GNAGSNPPNDLLNQ 118

Query: 194 RDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIF 253
           RD LL  ++   GIS     NN  V   + G  L                T T+      
Sbjct: 119 RDQLLSTMAGYAGISVSAHPNNPDVYDVTIGGRLVVQGDETTEITS----TRTATGFEFS 174

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
           +DG  ++      +P+G I A +++  + +  +Q +++  +  L  +  +
Sbjct: 175 VDGQKLN------MPEGSIIASVRVNQNEIKSYQEKIETFSNGLAKALDD 218


>gi|188997558|ref|YP_001931809.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932625|gb|ACD67255.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 236

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/177 (8%), Positives = 43/177 (24%), Gaps = 11/177 (6%)

Query: 20  QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76
           Q  +   NI N++   + +   R+    I      V           D  +      + +
Sbjct: 21  QLDTTTNNIANSNTPGFKKLLVREMSQKIPENKGKVGDL-LVFPRFMDSSVLNFQGPLIK 79

Query: 77  QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL-------GKTVID 129
                    +++     +               + E Y  +++   +        +    
Sbjct: 80  TENNLDLAIVRDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAYVLDENFRRIQIQDS 139

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             +   +       ++       + +    + N      E  + N  IK       +
Sbjct: 140 KFQITPKGEIYQNGQITGKIRVVNLQNLQAVGNSYYQGQEQQITNFEIKQGYLEGAN 196


>gi|251799752|ref|YP_003014483.1| hypothetical protein Pjdr2_5791 [Paenibacillus sp. JDR-2]
 gi|247547378|gb|ACT04397.1| protein of unknown function DUF1078 domain protein [Paenibacillus
           sp. JDR-2]
          Length = 275

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 74/274 (27%), Gaps = 10/274 (3%)

Query: 201 ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
            S +I  S  +      +   +D      TV               +   P   +     
Sbjct: 2   NSSMINASVSMNALQQKLDMLADNIANVNTVGYKRKEATFEDLLNNTRKQPDAFNQPGRL 61

Query: 261 SNQGSAVPKGKIKAL--LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           ++       G   A+    ++   +   +   D             +     +    G  
Sbjct: 62  TSLNFNQGWGSRLAMIQPNLQQGTIKTTEKDTDLAIEGDALFEVAVNANGDRAYTRNGAL 121

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                 + D  L       +  N      P  +  G  +        + +A     I   
Sbjct: 122 QLTVAANGDTILATPEGYPVVANTPAGEGPLVVPSGYQLRVNADGTAEGVATDGSTIELG 181

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438
                +      +  +  N  L E A         N +D       +      + +    
Sbjct: 182 SIKLVQATRPAALTLVADN--LYEIAD------GINVADVLQNVTPNGENGIALRQGALE 233

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              VNL +E++ LI V+++Y ++ + +  +D M+
Sbjct: 234 QSNVNLGDEMTELINVQRAYQMAARALTSSDTMM 267



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 40/156 (25%), Gaps = 7/156 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A    N   Q+   +  NI N +   Y R++        N      R +    
Sbjct: 1   MNSSMINASVSMNALQQKLDMLADNIANVNTVGYKRKEATFEDLLNNT-----RKQPDAF 55

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   +S    Q        ++  +             ++   D+L   + N + D 
Sbjct: 56  --NQPGRLTSLNFNQGWGSRLAMIQPNLQQGTIKTTEKDTDLAIEGDALFEVAVNANGDR 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                      V  N +T     +     A+     
Sbjct: 114 AYTRNGALQLTVAANGDTILATPEGYPVVANTPAGE 149


>gi|255605341|ref|XP_002538377.1| Flagellar L-ring protein precursor, putative [Ricinus communis]
 gi|223512459|gb|EEF24006.1| Flagellar L-ring protein precursor, putative [Ricinus communis]
          Length = 334

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 3/105 (2%)

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFN-KNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            V+         +     +     +  +        VA       L     N +  +E  
Sbjct: 3   GVTIPEGAISVTVGSDGTVSAQMPNQTDLTQIGQIQVASFPNPAGLQAVGDNYL--IETP 60

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
            S +  L          I +       VN+ EEL  +I+ +++Y 
Sbjct: 61  ASGTVALGNAGIDGRGTIRQGMLEGSNVNVVEELVDMIETQRAYE 105


>gi|311033282|ref|ZP_07711372.1| hypothetical protein Bm3-1_22549 [Bacillus sp. m3-13]
          Length = 280

 Score = 53.1 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 73/272 (26%), Gaps = 21/272 (7%)

Query: 203 EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
           ++I  +    +       ++    L      +    + ++ T       I +      S 
Sbjct: 20  DLISHNVANVDTVGYKQRSASFQELLAQQSNNQPLAQYDNQTARQSELGIRVGSGSGLSK 79

Query: 263 QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
               + +G +KA  ++ D  +                + ++                   
Sbjct: 80  TQLHLTQGPMKATDRMLDFALTKENQFFTVQVTENGQTSTQFTRNGV------------- 126

Query: 323 IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
                    + +  T   +P   S+   +    +V +  L     L+             
Sbjct: 127 FYLSPVNNAEVMLVTSEGHPVLDSDEQPIILPENVKEVKLQESGILSAVMTDGQAIAREL 186

Query: 383 NKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI--SESYSNTV 440
               +  P        +L      ++   E        +          I   +      
Sbjct: 187 GVAEVIRPQMLEARPGSLYALPPENVANQES------VVGFLQGGARQDIRMQQGMLEQS 240

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            V+L  E++ +  +++SY  + K + F D+M+
Sbjct: 241 NVDLASEMTEMTLMQRSYQFNAKSVQFADQMM 272



 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 7/105 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A N  N   +Q   I  N+ N D   Y +R                +  N   
Sbjct: 1   MNRIMLNATNTMNQLQKQLDLISHNVANVDTVGYKQRSASFQELLA-------QQSNNQP 53

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             +  +  +        + S   L +            T  +   
Sbjct: 54  LAQYDNQTARQSELGIRVGSGSGLSKTQLHLTQGPMKATDRMLDF 98


>gi|154710440|gb|ABS84283.1| FlgG-2 [Treponema paraluiscuniculi]
          Length = 271

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +++   S +       +       + +     VN+  E+  +I+V ++Y  + K I   
Sbjct: 199 TYMQTPVSGAPIAAEGPE--RPAAVQGFVEASNVNVVNEMVRMIEVNRAYEANQKTIQAE 256

Query: 469 DKMLQTLLE 477
           D M+  L  
Sbjct: 257 DGMMGRLWN 265



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 29/145 (20%), Gaps = 34/145 (23%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTM--------TTIS 46
             A +  +    +  +I +N+ N D  +Y R             R              S
Sbjct: 6   YTAASGMSAQQHRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKNPFGSS 65

Query: 47  ------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                  +    V             L    S          F  ++     +       
Sbjct: 66  DVSPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEE------- 118

Query: 101 THYISKLRDSLESYSKNLSEDILGK 125
                     +E Y    +   +  
Sbjct: 119 YTRNGNFLVGVEGYLMTKNGYPVLG 143


>gi|94266018|ref|ZP_01289739.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94270422|ref|ZP_01291737.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93450809|gb|EAT01850.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453413|gb|EAT03835.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 118

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 412 EKNRSDSHDLHMKSQVVFNHISES--YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
               + +  +      V    ++         V+L EE+  ++   + +  + K++   D
Sbjct: 48  GGVEARAEKIDTPGPQVSEQTADGPELVEKSNVDLAEEMPNMMLSRRYFQANLKVVQTED 107

Query: 470 KMLQTLLEGV 479
           + L  LL   
Sbjct: 108 ERLGNLLNIK 117



 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTV 52
          ++     A +      Q+ ++   N+ N +   Y +       +  P  V  
Sbjct: 1  MVGGIQAALSGLQALQQKNSATAHNVANVNTDGYKKVKVSLAETTPPGGVEA 52


>gi|83589649|ref|YP_429658.1| hypothetical protein Moth_0797 [Moorella thermoacetica ATCC 39073]
 gi|83572563|gb|ABC19115.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 253

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + + +     V+L  EL  ++ V +SY  + K+I   D+ L
Sbjct: 201 QVKQGWLEESNVDLARELVDMLAVLRSYEANQKVIQTEDQTL 242



 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/219 (6%), Positives = 39/219 (17%), Gaps = 23/219 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L     A         +   I  N+ NA    +          P               
Sbjct: 1   MLRGLYLASTGMLVQEMRQDVISNNLANATTGGFKSAVATVRSFPEMLLQRLEKNQAIPI 60

Query: 48  ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                 V V    +  +      L     A     +      +                 
Sbjct: 61  GPFSPGVMVDNIYTNTEP---GPLTETGHATDLALVQPGV-GVSPAFFVVRTPGGEAYTR 116

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
             + +     +        +     D           +   +       D+   +  +N 
Sbjct: 117 NGQFQVDPGGWLVTAEGYPVQGQNGDIYVGTTDFKVDAGGRILVNGQVVDQLRVVTFANP 176

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
                +   +  A   +     +        +     ++
Sbjct: 177 ALLQRQGDTLFTAPGAQALPAANFQVKQGWLEESNVDLA 215


>gi|320529387|ref|ZP_08030475.1| flagellar basal-body rod protein FlgC [Selenomonas artemidis
          F0399]
 gi|320138353|gb|EFW30247.1| flagellar basal-body rod protein FlgC [Selenomonas artemidis
          F0399]
          Length = 151

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M +    + A +       +   I  NI NA+         Y RR  +  
Sbjct: 1  MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQ 50



 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           E Y     VN+  E+  +I   + Y  +   I     M+   L
Sbjct: 103 EGYVERPNVNIVSEMVDMISASRGYEANTTTINAAKSMVNAAL 145


>gi|114706758|ref|ZP_01439658.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506]
 gi|114537706|gb|EAU40830.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506]
          Length = 240

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 51/206 (24%), Gaps = 2/206 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  ++  NI NA    +   +        +         +K  
Sbjct: 1   METSLPVALSGQIAMEKRLETLAHNIANARTVGFRAEEVRFEELLSHTAPDPVAFVSKG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  L   S A+ Q           E   A    N        +++ S E   + L+   
Sbjct: 60  -ETYLSNKSGALTQTGNPLDLAVRGEAFFAIQGDNGIVYTRDGRMQVSPEGMVQTLTGRP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L        +        +      I  +  +   + +  + +  +        +     
Sbjct: 119 LLDAGGQALQVDPAGGPLTIGGNGMIHQNGQEVAAVGLFRIPQGANVTRADTSGVVSDVP 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208
           +        D       + + +  + 
Sbjct: 179 ATPVVEFLTDNVVQGYVEEANVNPVQ 204



 Score = 43.9 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 26/49 (53%)

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + +++ + Y     VN  +E++ LI +++++  +  ++   D+ L   +
Sbjct: 186 LTDNVVQGYVEEANVNPVQEMTRLIALQRAFESAANVVQTNDRSLSEAI 234


>gi|121596384|ref|YP_988280.1| flagellar basal body rod protein [Acidovorax sp. JS42]
 gi|120608464|gb|ABM44204.1| flagellar basal body rod protein [Acidovorax sp. JS42]
          Length = 101

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          +  +   AQ+    A  +  S   N+ N +   + R+      +P    V  + +     
Sbjct: 1  MTTLAAIAQSGLQAAQLRLDSSAHNVANLNTPGFRRQTVDQQAAPAPGGVQARVAAPAAA 60

Query: 63 FDKVLHAHS 71
              L A +
Sbjct: 61 PGVALEAEA 69


>gi|313905151|ref|ZP_07838520.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6]
 gi|313470054|gb|EFR65387.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6]
          Length = 247

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +        G ++ +E + +I+ +++++ + +++  +D++ QT + G++
Sbjct: 199 TVVTGALEQSGTDIAKEFTNMIEAQRAFSYNLRMVQTSDEVAQT-INGLR 247


>gi|304438470|ref|ZP_07398410.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon
          149 str. 67H29BP]
 gi|304368553|gb|EFM22238.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon
          149 str. 67H29BP]
          Length = 151

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M +    + A +       +   I  NI NA+         Y RR  +  
Sbjct: 1  MGMFLGIDTAASGLTAERLRMDVISNNIANANTTRTQGGGAYHRRYVVFQ 50



 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + Y     VN+  E+  +I   + Y  +   I     M+   L
Sbjct: 103 DGYVERPNVNIVAEMVDMISASRGYEANTTTINAAKSMVNAAL 145


>gi|260431749|ref|ZP_05785720.1| flagellar basal-body rod protein FlgF [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415577|gb|EEX08836.1| flagellar basal-body rod protein FlgF [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 236

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/119 (8%), Positives = 28/119 (23%), Gaps = 16/119 (13%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE--NKNMFD 64
           Q+       +   +  NI NA+   Y ++  + +      P   ++   R +  N +   
Sbjct: 11  QSGLM---NEMRLVANNIANANTTGYRQQGLVFSEFVRDLPGAPSLSMSRGQVRNTSFEQ 67

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
            +L                    +     +  + +                       +
Sbjct: 68  GLLTQTGGQFDFAIEG-------DGFFLIETPSGNRLTRAGSFAPDANGDLVTPDGYRV 119


>gi|310816827|ref|YP_003964791.1| flagellar basal-body rod protein FlgC [Ketogulonicigenium vulgare
          Y25]
 gi|308755562|gb|ADO43491.1| flagellar basal-body rod protein FlgC [Ketogulonicigenium vulgare
          Y25]
          Length = 127

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 16/56 (28%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
              + A +     + +      NI NAD   Y R+      +  N   V      
Sbjct: 5  STTLSIAASGMQAQASRMRFTSENIANADTPGYHRKLVSFRAAHANDGTVEASRVR 60


>gi|222530299|ref|YP_002574181.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457146|gb|ACM61408.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 255

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 5/143 (3%), Positives = 22/143 (15%), Gaps = 21/143 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       N+ N     + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                            +    +       +        F  ++  +  +          
Sbjct: 61  NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIE--VPENQGAQQIFYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKT 126
                 +       L+   +   
Sbjct: 119 NGAFTLNSRGELVTLNGFYVLGQ 141



 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             + + Y     VN  +E+  +I V ++Y  + K  +  D+ LQ  + 
Sbjct: 203 GKVLQGYLEGSNVNSVQEMVNMISVLRAYEANQKAFVIQDETLQKAVN 250


>gi|153953798|ref|YP_001394563.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM
           555]
 gi|219854414|ref|YP_002471536.1| hypothetical protein CKR_1071 [Clostridium kluyveri NBRC 12016]
 gi|146346679|gb|EDK33215.1| FlgG2 [Clostridium kluyveri DSM 555]
 gi|219568138|dbj|BAH06122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 261

 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 52/203 (25%), Gaps = 14/203 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--------SPENVTVVT 54
           +L     + +  N   ++  SI  N+ NA+   Y R               +   V    
Sbjct: 1   MLRAIWNSASAMNAEQEKLNSISNNMANAETVGYKREVVNFQDLVYETLDRNGYPVNDEG 60

Query: 55  QRSENKNMFDKVLH---AHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDS 110
           Q + N                ++ +  L  +     E        N +           +
Sbjct: 61  QNTINGTGVRTTNWLRDTLQGSLQETGLKANMAIDGEGFFRVTLQNGTQGYERAGNFNVN 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                 +   + L   + +    ++ +             D   +I + + +      ++
Sbjct: 121 SMGELVDPDGNRLEVNLTEEGVNLINSGVLLNN--DNFTVDKKGQIYVNVDDNSVLYGKI 178

Query: 171 TVVNDAIKFKTASKHDAHDFLDQ 193
            V N   +    S  D      +
Sbjct: 179 NVYNAVGQDSMLSIGDNLYLPAE 201



 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/260 (9%), Positives = 77/260 (29%), Gaps = 20/260 (7%)

Query: 223 DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSV 282
           +  +        + +++            +  +G  V+    + +    ++    +RD++
Sbjct: 20  NSISNNMANAETVGYKREVVNFQDLVYETLDRNGYPVNDEGQNTINGTGVRTTNWLRDTL 79

Query: 283 VPIFQNQLDEMARVLIGSFSEKDP--IAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
               Q    +    + G    +             G F  + + +L +     +   +  
Sbjct: 80  QGSLQETGLKANMAIDGEGFFRVTLQNGTQGYERAGNFNVNSMGELVDPDGNRLEVNLTE 139

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                 N   L +  + +      +        ++    +        D +  I  N+ L
Sbjct: 140 EGVNLINSGVLLNNDNFTVDKKGQIYVNVDDNSVLYGKIN-VYNAVGQDSMLSIGDNLYL 198

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                          +++  +         +I + Y     V+L  E++ +I  ++++ +
Sbjct: 199 P--------------AENVQVTENQDA---NILQGYLEQSNVDLGREITDMILAQRAFAL 241

Query: 461 SNKLIMFTDKMLQTLLEGVK 480
             K +   D+M   +    +
Sbjct: 242 GAKGLTTADEMWGLINNMKR 261


>gi|226315010|ref|YP_002774906.1| flagellar hook-basal body protein [Brevibacillus brevis NBRC
           100599]
 gi|226097960|dbj|BAH46402.1| putative flagellar hook-basal body protein [Brevibacillus brevis
           NBRC 100599]
          Length = 276

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 27/42 (64%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + +    +  V++ EE+S L+ ++++Y ++++ I  +D+M+
Sbjct: 226 TLRQGALESSNVSMTEEMSQLVNIQRAYQLNSRAIGISDQMM 267



 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
            N + +      Q   +   N+ N D   Y RR    +    
Sbjct: 3  SLNISTSAMRGIQQALDNTANNLSNIDTIGYKRRVASFSELLT 45


>gi|51246532|ref|YP_066416.1| flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila
           LSv54]
 gi|50877569|emb|CAG37409.1| related to flagellar basal-body rod protein (FlgF) [Desulfotalea
           psychrophila LSv54]
          Length = 248

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 7/116 (6%), Positives = 24/116 (20%), Gaps = 1/116 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE-NKN 61
           +++    A +   +  Q  ++I  N+ N +   + +          N    +        
Sbjct: 1   MVSGKYSALSGALSRQQAISTISNNLANVNTTGFKKNTLSFESILNNQQQNSAEGINYSR 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           +                         +        N +            ++    
Sbjct: 61  VGKSSTDFKQGTFKPTENPMDLAIQGKAFFKVQGVNGALYTRRGDFGLRGDNVLTT 116


>gi|325288776|ref|YP_004264957.1| flagellar basal-body rod protein FlgC [Syntrophobotulus
          glycolicus DSM 8271]
 gi|324964177|gb|ADY54956.1| flagellar basal-body rod protein FlgC [Syntrophobotulus
          glycolicus DSM 8271]
          Length = 160

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 22/102 (21%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN--------KN----YVRRDTMTTISPE 48
          MSL +  + + +       +   I  NI N +               Y R+  + +    
Sbjct: 1  MSLFSGMDISASGLTAQRLRMDLISSNIANMNTNHTEATTAAGNPIPYRRQMAVFST--- 57

Query: 49 NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90
                 R+   +       A  S +GQ   +      +   
Sbjct: 58 -------RNSPNDFLSAFRSAGESEVGQGVSVTQILEDESPF 92


>gi|225569956|ref|ZP_03778981.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM
           15053]
 gi|225161426|gb|EEG74045.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM
           15053]
          Length = 250

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 59/239 (24%), Gaps = 27/239 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-------------------TMT 43
           +   F    +     +++   I  N+ N     Y R                     +  
Sbjct: 1   MFQGFYNLTSGVLTQTRRMNVISNNMSNVSTPGYKRDQFVCKTFKEEMIYRSGNKDKSSP 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   +V       +       +  S +        F  ++         N S +  
Sbjct: 61  AQLGTMNRIVAADRNYTDFAAGGYESTESPLDFAIGTSGFFRIQSGNGTVYTRNGSFSLD 120

Query: 104 ISKLRDSLESYSK--NLSEDILGKTVIDNAEEVVQNFNTSAREVQK-----IRADADKEI 156
            +    +L+   +    +  I   T    A+ +   ++                + D+E+
Sbjct: 121 NNGYL-ALQGVGRVLGQNGPIYLGTDKIRADRLGNLYSEDGNNFLGRLSVVDFQNYDEEL 179

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
                ++     + T VN  +  K     +     +   ++  + +       +   + 
Sbjct: 180 TKTTGDVYTSAGQGTAVNADVVHKALESSNVEPVNEMTQMMAGERALQSSAQVLKMYDQ 238



 Score = 36.9 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 54/185 (29%), Gaps = 5/185 (2%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
            QL  M R++    +  D  AG  E+               ++  G       N  +  +
Sbjct: 61  AQLGTMNRIVAADRNYTDFAAGGYESTESPLDFAIGTSGFFRIQSGNGTVYTRNGSFSLD 120

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +       V +    N     G   +      +       + +  ++  V    Y    
Sbjct: 121 NNGYLALQGVGRVLGQNGPIYLGTDKIRADRLGNLYSEDGNNFLGRLSV-VDFQNYDEEL 179

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                    D +    +   V   +      +  V    E++ ++  E++   S +++  
Sbjct: 180 TKTTG----DVYTSAGQGTAVNADVVHKALESSNVEPVNEMTQMMAGERALQSSAQVLKM 235

Query: 468 TDKML 472
            D+++
Sbjct: 236 YDQII 240


>gi|222530141|ref|YP_002574023.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222456988|gb|ACM61250.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 145

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          +    N + +  +    +   I +NI NA+         Y R+  +   
Sbjct: 1  MFDAINISSSALSAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEE 49


>gi|325567512|ref|ZP_08144179.1| hypothetical protein HMPREF9087_0468 [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158945|gb|EGC71091.1| hypothetical protein HMPREF9087_0468 [Enterococcus casseliflavus
           ATCC 12755]
          Length = 260

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 23/172 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------- 47
           M++  +   +++  N+      +   NI N +   Y  + T                   
Sbjct: 1   MNISGLLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNG 60

Query: 48  ----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                  ++  + +   +     L   +  +        F  +++               
Sbjct: 61  NAAQYGASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQL------LLSR 114

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                 S      N     +  T      +       +     ++  + + +
Sbjct: 115 AGNFHLSENKQLVNSEGYPVAMTTNVPTAQWPDVQQIAIDASGQLTTEENGQ 166



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 5/248 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           L       +N  + N  T  +    +  +G    +    A+ +  I A   + +     +
Sbjct: 6   LLGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQY 65

Query: 287 ---QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                                     +       F     +     L +  +  +  N Q
Sbjct: 66  GASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQ 125

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             ++  +     +      W                +   +  +   +       T  E 
Sbjct: 126 LVNSEGYPVAMTTNVPTAQWPDVQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNT--EN 183

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
             +    L      +      +   F  + +       V+L   ++ L+  +++Y ++ K
Sbjct: 184 ITSVGNQLYSAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTK 243

Query: 464 LIMFTDKM 471
            +   D+M
Sbjct: 244 AMQTADEM 251


>gi|225569955|ref|ZP_03778980.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM
           15053]
 gi|225161425|gb|EEG74044.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM
           15053]
          Length = 236

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 25/117 (21%), Gaps = 9/117 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------SPENVTVVTQ 55
           +   F  A         +   I  N  N +   Y  + ++          + E V     
Sbjct: 1   MNTSFYTASRGARTQQDKLNVISNNFANVNTYGYKAKSSVFQDLMYYNMRAGEGVATHLT 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA--DDHYNNSPTHYISKLRDS 110
                 +     +   S +G       +    +      D   N            S
Sbjct: 61  SGTGTVLDHTNTNFSQSGLGDGIGGYDYAISGDGFFMLRDPVTNEISYTRNGHFSLS 117



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 52/235 (22%), Gaps = 3/235 (1%)

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
            ++         +      V       +              L           +     
Sbjct: 2   NTSFYTASRGARTQQDKLNVISNNFANVNTYGYKAKSSVFQDLMYYNMRAGEGVATHLTS 61

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
              +               D       + +       R   +            L    +
Sbjct: 62  GTGTVLDHTNTNFSQSGLGDGIGGYDYAISGDGFFMLRDPVTNEISYTRNGHFSLSRRAD 121

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD--LHMKS 425
                   N       +N I      +     +  +A         +             
Sbjct: 122 GFYLVTDSNKLVLDEGQNPIRVQGGTLQGRPGVYSFASTDGMQSAGDNEFVPVAKNGAPV 181

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                 + E Y     V++ +E++  ++  ++Y+   K++  +D++ QT +  ++
Sbjct: 182 LNREAKLLEGYLELSNVDMAQEMANTVESSRAYSYVLKMVQSSDEIEQT-INSLR 235


>gi|150390489|ref|YP_001320538.1| flagellar basal-body rod protein FlgC [Alkaliphilus
          metalliredigens QYMF]
 gi|149950351|gb|ABR48879.1| flagellar basal-body rod protein FlgC [Alkaliphilus
          metalliredigens QYMF]
          Length = 147

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          MS     N + +       +  +I +NI NA+         Y R+  +   
Sbjct: 1  MSYFNAINTSASGLTAERFRMDTISKNIANANTTRTPNGSPYKRQVVLFQS 51


>gi|325291945|ref|YP_004277809.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3]
 gi|325059798|gb|ADY63489.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3]
          Length = 244

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 11/216 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           + +    A +      ++  +I  N+ NA+   +   +              N  V    
Sbjct: 1   MQSGLYVALSSQIALERRLTTISDNMANANTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             N  +  +       A  Q      F    +   A D  +        +     +    
Sbjct: 61  QGNDYLSTRQ-----GAFEQTGNSFDFAIKGDAWFAMDTPDGQILSRDGRFTMRPDGALI 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + S   +        +        +      IR + +    L +         L   N  
Sbjct: 116 SSSGYPVLDAGGGPIQLNANGGPITVSLDGAIRQNDNIVATLGVFQADFSKGFLRHPNSG 175

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +K         ++          + S + GIS + +
Sbjct: 176 VKPVAPPTPVVNNHEVGVVQGYLEQSNVNGISQMTQ 211


>gi|163789628|ref|ZP_02184066.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7]
 gi|159875160|gb|EDP69226.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7]
          Length = 251

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/203 (7%), Positives = 46/203 (22%), Gaps = 26/203 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------- 46
           MS+    + +++  N    Q   +  +I N +   Y  ++                    
Sbjct: 1   MSIP--LSISKSGMNAIQNQMDVVSNDIANINTTGYKSKNISFNELLLNDMNGEAAYLSA 58

Query: 47  ---PENVTVVTQRSENK-NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                 +++ ++ +    N     L +  +        + F                   
Sbjct: 59  DAQGSGISIGSKSAVTSTNFTQGALVSDPNDYHLAIAGEGF------FGVTGENGERYLT 112

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                  + +    N + D L         +  +   + A   +      +  + +    
Sbjct: 113 RDGAFHVNGDKSITNDNGDTLEIQATIPINQWPEGDVSIAENGEVTIQSENNSMLVGTIP 172

Query: 163 LRRFLSELTVVNDAIKFKTASKH 185
           L        +        +    
Sbjct: 173 LFYPAQPNAMQPVGENKFSYDGA 195



 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/169 (8%), Positives = 49/169 (28%), Gaps = 2/169 (1%)

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
                     +     +A   +       +     +  +  +  N        +     +
Sbjct: 76  TNFTQGALVSDPNDYHLAIAGEGFFGVTGENGERYLTRDGAFHVNGDKSITNDNGDTLEI 135

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
                +  +P+      ++       +  + +   + L  +       ++    +     
Sbjct: 136 QATIPINQWPEGDVSIAENGEVTIQSENNSMLVGTIPL--FYPAQPNAMQPVGENKFSYD 193

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                    I + Y     V+L   ++ +I  ++SY+++ K+   TD+M
Sbjct: 194 GAFGTGEGSIQQHYLEASNVDLASSMTEMILAQRSYSMNLKVAQGTDEM 242


>gi|126730138|ref|ZP_01745950.1| flagellar basal-body rod protein FlgC [Sagittula stellata E-37]
 gi|126709518|gb|EBA08572.1| flagellar basal-body rod protein FlgC [Sagittula stellata E-37]
          Length = 129

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          MS  +   +       + + +   +  NI N D   Y R+     
Sbjct: 1  MSAFSDALSVTSGGLTSQAARLRVVSENIANVDTPGYRRKQLNFA 45


>gi|239828563|ref|YP_002951187.1| flagellar basal body rod protein [Geobacillus sp. WCH70]
 gi|239808856|gb|ACS25921.1| flagellar basal body rod protein [Geobacillus sp. WCH70]
          Length = 278

 Score = 52.7 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 14/45 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47
          +L  F  A +      ++      NI NA+   Y          P
Sbjct: 1  MLRGFYTAASGMMAQQRRIEMWTNNIANANTPGYKSDQAALRAFP 45



 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/200 (7%), Positives = 65/200 (32%), Gaps = 12/200 (6%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
            ++P F+    +              +  ++E      +   +++ +  +    +    +
Sbjct: 82  ELIPNFRQGDIKETGQPTDIALINGTLPVDAETGKEGTLFFIVQNENGDIRYTRNGNFTL 141

Query: 341 NPQ---YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           NPQ     ++  ++ D      +       +     ++     + N       +A     
Sbjct: 142 NPQGFLTTNDGWYVLDENGRRIQLPSTNFAVNADGTIV-----ANNTRIARINIAFAANP 196

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            TL++          ++ +      + +  +   + + +     V+L   ++ ++   ++
Sbjct: 197 NTLVKEGNGLF----RSENGVLPSALGNPNITYTLKQGFLERANVDLNRAMTEMLSAYRA 252

Query: 458 YNISNKLIMFTDKMLQTLLE 477
           +  + K++   D+ +   + 
Sbjct: 253 FEANQKIVQAYDRSMDKAVN 272


>gi|297585402|ref|YP_003701182.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10]
 gi|297143859|gb|ADI00617.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10]
          Length = 276

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       V++  E++ +I+ +++Y  +   I  TD+M
Sbjct: 229 VLQRALEMSNVDMSREMTSMIEAQRAYQFNASAIGITDQM 268



 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++ N A        ++  ++  N+ N +   + RRD      
Sbjct: 4  SMINSAVT-MGQLQKKLDTVGNNLANVNTIGFKRRDVSFNDL 44


>gi|170750088|ref|YP_001756348.1| hypothetical protein Mrad2831_3689 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656610|gb|ACB25665.1| protein of unknown function DUF1078 domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 263

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 73/259 (28%), Gaps = 6/259 (2%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
            +  G +       +I+    N+ TV  +S       ++  +   + +  G + +     
Sbjct: 9   NSISGASAQSLALNNISGNIANTQTVGFKSTETRFADMLAETGDSTQLAGGVLPSTRNSL 68

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           +    +    +     +    +       G  ++          +  D         +  
Sbjct: 69  NIQGTMQSTGVSTNLAISGNGYFIVKKNTGTPDSPAFGGDTGYTRRGDFAPDASGYLSNG 128

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 + PS        +         ++    L     D          +A       
Sbjct: 129 AGYYLFAGPSATTPVQVPTGASTLASLAVSPAGTLTGTAADGSTLALGTLQLAQFGMQDN 188

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L     +   ++   +S +    +        ++          + ++ S +I+ +Q+Y 
Sbjct: 189 LASL--DGGTYVATGQSGTPSYGLNGA----TVTAGSVEQSNAGISDQFSKMIETQQAYT 242

Query: 460 ISNKLIMFTDKMLQTLLEG 478
            + K++  TD+MLQ  +  
Sbjct: 243 ANTKVMSTTDQMLQDAIAM 261



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 50/224 (22%), Gaps = 10/224 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ----- 55
           M L    + + +  +  S    +I  NI N     +   +T            TQ     
Sbjct: 1   MGLFTALSNSISGASAQSLALNNISGNIANTQTVGFKSTETRFADMLAETGDSTQLAGGV 60

Query: 56  --RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH---YNNSPTHYISKLRDS 110
              + N       + +   +         +  +K+     D      ++           
Sbjct: 61  LPSTRNSLNIQGTMQSTGVSTNLAISGNGYFIVKKNTGTPDSPAFGGDTGYTRRGDFAPD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              Y  N +   L           V    ++   +    A        + S L     +L
Sbjct: 121 ASGYLSNGAGYYLFAGPSATTPVQVPTGASTLASLAVSPAGTLTGTAADGSTLALGTLQL 180

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
                     +                       +   ++ ++N
Sbjct: 181 AQFGMQDNLASLDGGTYVATGQSGTPSYGLNGATVTAGSVEQSN 224


>gi|149182501|ref|ZP_01860974.1| flagellar basal-body rod protein C [Bacillus sp. SG-1]
 gi|148849761|gb|EDL63938.1| flagellar basal-body rod protein C [Bacillus sp. SG-1]
          Length = 153

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 10/58 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISPE 48
          MS+    N + +  +    +   I  N+ NAD             Y R+  +   +  
Sbjct: 1  MSIFHSMNTSASALSAQRLRMDVISSNMANADTTRGKLVDGEWQPYRRKSVVFQPNGG 58


>gi|196018884|ref|XP_002118881.1| hypothetical protein TRIADDRAFT_62874 [Trichoplax adhaerens]
 gi|190577863|gb|EDV18633.1| hypothetical protein TRIADDRAFT_62874 [Trichoplax adhaerens]
          Length = 454

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 98/338 (28%), Gaps = 18/338 (5%)

Query: 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII 205
            ++RA  D   ++    + R       +   +    A    +  F      +    +E I
Sbjct: 107 GELRAFFDLRDKIIPDIINRLDVYTNTLVKQVNSAYADALPSSGFESVTGNMKFSNNESI 166

Query: 206 GIS-----TIVRNNNDMVVYTSDGTTLFE---------TVPRDINFEKMNSYTVTSESNP 251
            +        +  N+      S GT L                I  +K+ S   T     
Sbjct: 167 YVHGKFKIAFLNPNDGTQAKDSSGTPLSMIEIDLDSIRDSNYQITIDKLISEINTKTHGK 226

Query: 252 IFIDGVVVSSN-QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
           + ++ V   SN   S     ++K+     +  +    + L       I +  ++ P   N
Sbjct: 227 VIVELVDNDSNVITSGQGYLRLKSDNPNFNFAIVDDNSNLSTDYASFISTNKDQKPFGVN 286

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
                    +       N      S          +    +       +   + +     
Sbjct: 287 KFFGFNHIFSYSTDKYYNPGSFDNSAISLEVSDKITQNRKIDTAEIHVEGSNYAIGRN-- 344

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
             ++++   +   K F F     I+   + L  Y    +  +      +       ++  
Sbjct: 345 NQNILSELFELKEKQFNFPSYKRISNTTSSLAGYGNGIVSTVNVKHYYAEKRFNDEKIKL 404

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
             I+E  S+  GVN  +EL  + + E+ Y  S K+   
Sbjct: 405 EAINEEISSKSGVNADQELLNITQYERLYLNSLKVFQT 442


>gi|240139802|ref|YP_002964279.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens
           AM1]
 gi|240009776|gb|ACS41002.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens
           AM1]
          Length = 246

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/193 (4%), Positives = 28/193 (14%), Gaps = 6/193 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +     +++   I  N+ N     +  R +        V        +   
Sbjct: 1   MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSSRFQEYLMPVASADSFQRSDRR 60

Query: 63  FDKVLHA------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              V+            +             +   A                        
Sbjct: 61  LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +            +     A +         +     ++       +    N  
Sbjct: 121 TSDGHAVQGDGGPITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGANLF 180

Query: 177 IKFKTASKHDAHD 189
                        
Sbjct: 181 SSEAPGRPAGPGA 193


>gi|302037627|ref|YP_003797949.1| flagellar basal-body rod protein FlgF [Candidatus Nitrospira
           defluvii]
 gi|300605691|emb|CBK42024.1| Flagellar basal-body rod protein FlgF [Candidatus Nitrospira
           defluvii]
          Length = 255

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
                     +      +   +     VN   E+  +++  +SY  + KLI   D+M +T
Sbjct: 187 AEGLFVGGKPAVSTRPQVQSGHIEESNVNSLSEMVKMMQGMRSYESAQKLIQTMDRMTET 246

Query: 475 LLE 477
            ++
Sbjct: 247 AIQ 249



 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 6/170 (3%), Positives = 25/170 (14%), Gaps = 33/170 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-------TMTTISPENVTVVT- 54
           +        +      +Q      N+ N +   + +            + +   V     
Sbjct: 1   MNRAIYPILSGAVAQEKQLTVFANNLANVNTAGFKQDQQGFRGLFARASSTGTGVVSGGL 60

Query: 55  ------------------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                                         +    + +             +        
Sbjct: 61  SSAISTRPAGPSERVFAEVHGVRTAFEPGRIRITGNPLDVAI-------QSDGFFEVKTP 113

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
           +              +          +  T  +           +   +Q
Sbjct: 114 DGVRYTRNGIFSLDSQRRLVTNLGHPVMGTKGEIKVPPGNIQINAEGAIQ 163


>gi|1294806|gb|AAB06803.1| hook protein [Treponema denticola]
          Length = 184

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 35/163 (21%), Gaps = 28/163 (17%)

Query: 27  NIENADNKNYVRRDTMTTIS--------------PENVT------VVTQRSENKNMFDKV 66
           N+ N +   + R                         V        +   S +       
Sbjct: 1   NVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELGGVNPKEVGLGMMVASIDTIFTQGA 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           L               F  LK+          +            E    N +  +  + 
Sbjct: 61  LQTTGVNTDLAIQGNGFFILKD-------GEKTFYTRAGAFGIDKEGTLVNPANGMRVQG 113

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
            +   E        ++ + + +     ++++ + +    +   
Sbjct: 114 WMAE-EAEGFRIINTSGQTEDLNIPIGQKLDRKATTSVNYACN 155


>gi|154249603|ref|YP_001410428.1| hypothetical protein Fnod_0921 [Fervidobacterium nodosum Rt17-B1]
 gi|154153539|gb|ABS60771.1| protein of unknown function DUF1078 domain protein
           [Fervidobacterium nodosum Rt17-B1]
          Length = 250

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD-------LHMK 424
               N+  +   +  +      I+    +L+   N I  +      +             
Sbjct: 130 NTQGNYLLNQNGQEIVVPETFSIDEAGNILDGNGNVIDRIAVYALSNPRKIGDTLFAGQP 189

Query: 425 SQVVFNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  +   I   Y     VN+  E+  +I+  + Y  ++K I+  D++L  ++  V
Sbjct: 190 QNLPEDSFRILPGYIEKSNVNVVREMVKMIEAHRHYEATSKAIVVHDELLNKVINNV 246



 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/170 (8%), Positives = 32/170 (18%), Gaps = 15/170 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------- 49
           +      A         +  ++  N+ N +   Y                          
Sbjct: 1   MYRGVYTAAMGMLVDITKIDTLSNNLANVETNGYKADTPTFKAYFNKEIDRIKPEPENRR 60

Query: 50  VTVVTQRSENKNMFDKVLHAHSSA--IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           V V    +  + +    +  + S   + Q  +        +   A    N        + 
Sbjct: 61  VEVKKIGNLEQAVILDEVRTNFSQGILEQTNVPSHIAINGDGFFAVRKANEIFYTRNGEF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                    N   + L                  A  +     +    I 
Sbjct: 121 IRDSNGRLVNTQGNYLLNQNGQEIVVPETFSIDEAGNILDGNGNVIDRIA 170


>gi|163758009|ref|ZP_02165097.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43]
 gi|162284298|gb|EDQ34581.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43]
          Length = 241

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 35/149 (23%), Gaps = 2/149 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  ++  N+ NA+   +   +        +  V      N+  
Sbjct: 1   MQGSLYVALSSQIALERRMNTLADNVANANTTGFRATEIKFNEVLADTGVANVSFVNQG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  L   +  +        F    E     +    +      +   +      N+    
Sbjct: 60  -EDYLSTENGGLRTTGSQLDFAIRGEAWFMVETPTGNMLTKDGRFTITQAGELVNIDGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
           +        +         A     +  D
Sbjct: 119 VLDPGGAPIQLNPAGDPPKAGRDGGLTQD 147


>gi|138896904|ref|YP_001127357.1| flagellar hook-basal body protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268417|gb|ABO68612.1| Flagellar hook-basal body protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 273

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 67/255 (26%), Gaps = 4/255 (1%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           TL   +               +E     +D +             +      +  +++  
Sbjct: 21  TLSHNIVNSNTTGFKRREASFAELLTQQVDRLPDDEAPRQTPAGVRYGNGAGLASTMLVT 80

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            Q  L E  R L  +F+  +                G     N     I + + +     
Sbjct: 81  AQGPLTETGRALDFAFTAANQWFRVRVTDGNGVATIGYTRAGNFSLTPIGDRLALVTS-D 139

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
             P        +          L+    L     +      +   V  I     L     
Sbjct: 140 GRPVLDETNAPIELPAHATGFQLSPTGTLTATDANGAVVARVNLGVTVIRRPQLLEALGD 199

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           N         +           +   + +       V+L EEL  L+   ++Y ++ + I
Sbjct: 200 NVFTLPTAPGATQELNGNLRSQI--AMKQGALEQSNVDLGEELIGLMATTRAYQLNARAI 257

Query: 466 MFTDKMLQTLLEGVK 480
             +++ML  L+  ++
Sbjct: 258 SISEQMLG-LINNLR 271



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +L   + A N  N   Q+  ++  NI N++   + RR+        
Sbjct: 1  MLRSMHTAANTMNALQQRLDTLSHNIVNSNTTGFKRREASFAELLT 46


>gi|126463750|ref|YP_001044864.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332559806|ref|ZP_08414128.1| flagellar basal body rod protein FlgC2 [Rhodobacter sphaeroides
          WS8N]
 gi|126105414|gb|ABN78092.1| protein of unknown function DUF1078 domain protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|332277518|gb|EGJ22833.1| flagellar basal body rod protein FlgC2 [Rhodobacter sphaeroides
          WS8N]
          Length = 126

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          M+ LL     + +   + + +   +  NI NAD   Y R+       P++  V T
Sbjct: 1  MTDLLQSLGLSASGMRSQALRLRHVSENIANADTPGYHRKTVSFQEDPDSGLVST 55



 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           S G +  +RS+   ++     +     + Y +   V+L  E++   + ++SY  + ++  
Sbjct: 54  STGPVRLDRSELQKIYAPGHPLAG--EDGYYDGSNVDLVVEVADAREAQRSYEANLRMFD 111

Query: 467 FTDKMLQTLLEGVK 480
              +M Q+LL+ ++
Sbjct: 112 QARQMTQSLLDLLR 125


>gi|77464908|ref|YP_354412.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides
          2.4.1]
 gi|221640829|ref|YP_002527091.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides
          KD131]
 gi|77389326|gb|ABA80511.1| putative flagellar basal-body rod protein FlgC [Rhodobacter
          sphaeroides 2.4.1]
 gi|221161610|gb|ACM02590.1| flagellar basal-body rod protein FlgC [Rhodobacter sphaeroides
          KD131]
          Length = 128

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          M+ LL     + +   + + +   +  NI NAD   Y R+       P++  V T
Sbjct: 3  MTDLLQSLGLSASGMRSQALRLRHVSENIANADTPGYHRKTVSFQEDPDSGLVST 57



 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           S G +  +RS+   ++     +     + Y +   V+L  E++   + ++SY  + ++  
Sbjct: 56  STGPVRLDRSELQKIYAPGHPLAG--EDGYYDGSNVDLVVEIADAREAQRSYEANLRMFD 113

Query: 467 FTDKMLQTLLEGVK 480
              +M Q+LL+ ++
Sbjct: 114 QARQMTQSLLDLLR 127


>gi|207111880|ref|ZP_03246042.1| flagellar basal body rod protein FlgG [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 36

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           EE++ LI  +++Y  ++K I   D MLQT+    +
Sbjct: 1   EEMTDLITAQRAYEANSKSIQTADAMLQTVNSLKR 35


>gi|126734103|ref|ZP_01749850.1| flagellar basal-body rod protein FlgC [Roseobacter sp. CCS2]
 gi|126716969|gb|EBA13833.1| flagellar basal-body rod protein FlgC [Roseobacter sp. CCS2]
          Length = 130

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 13/51 (25%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
              + A +     + +   +  NI N D   Y R+               
Sbjct: 5  SDAISVATSGMKAQASRLRHVSENIANTDTPGYRRKAITFEELVTQGRTTG 55


>gi|312621566|ref|YP_004023179.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202033|gb|ADQ45360.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 145

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          +    N + +  +    +   I +NI NA+         Y R+  +   S
Sbjct: 1  MFDAINISSSALSAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEES 50


>gi|260222465|emb|CBA32056.1| Flagellar basal-body rod protein flgC [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 134

 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++FN + +  +  SQ+   +  N+ NAD         Y  R  +    P      +
Sbjct: 1  MSMFSIFNVSGSAVSAQSQRLNVVASNLANADAVAGPDGQGYKSRQVVFETVPMGSEASS 60



 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + Y     VN  EE+  +I   +SY  + +++     +L   L+ 
Sbjct: 88  DGYVTQSNVNPVEEMVNMISASRSYQNNVEVMNTAKSLLLKTLQM 132


>gi|237755436|ref|ZP_04584061.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692400|gb|EEP61383.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 236

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/176 (8%), Positives = 42/176 (23%), Gaps = 9/176 (5%)

Query: 20  QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQ----RSENKNMFDKV--LHAH 70
           Q  +   NI N++   + +   R+    I      V       R  +  + +    L   
Sbjct: 21  QLDTTTNNIANSNTPGFKKLLLREMSQKIPENKGKVGDLLVFPRFMDSPVLNFQGPLIKT 80

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
            + +    +   F  ++  +      N   +         +             +     
Sbjct: 81  ENNLDLAIVGDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAYVLDENFRRIQIQDSK 140

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
            +   +       ++       + +    + +      E    N  IK       +
Sbjct: 141 FQITPKGEIYQNGQITGRIRVVNLQNLQAVGSSYYQGQEQQTTNFEIKQGYLEGAN 196


>gi|218133658|ref|ZP_03462462.1| hypothetical protein BACPEC_01527 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991033|gb|EEC57039.1| hypothetical protein BACPEC_01527 [Bacteroides pectinophilus ATCC
          43243]
          Length = 149

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVT 51
          M+L + FN A +       +   I  NI N +         YVR++   T   ++V 
Sbjct: 1  MALFSQFNIASSGMTAQRLRTDVISENIANVNTTRTSDGTPYVRKEVYFTEKGKSVQ 57


>gi|303239788|ref|ZP_07326312.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2]
 gi|302592725|gb|EFL62449.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2]
          Length = 259

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 43/179 (24%), Gaps = 9/179 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +    N  ++Q   I  N+ N     Y +   +    P        R  N   
Sbjct: 1   MIRALYTSGWSMNANNKQMDVISNNLANVSTNGYKKDTVVYESFPN----ALVRRVND-- 54

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
             +     S  +G  +L      +             N+    I     +  +       
Sbjct: 55  -TESTLNPSGKVGDVQLGNDVGQVFTYYTSGQLASTGNNLDLAIGSSDSAFFTIGVPSEN 113

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             L +    +    + +          +    D  I LE  N         V N  +  
Sbjct: 114 GELTEYYTRDGSFCLNSAKQLVTSEGYMVMGTDGPITLESENFSVLDDGSIVQNGQVVD 172



 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 66/257 (25%), Gaps = 12/257 (4%)

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGS--AVPKGKIKALLQIRDS 281
            T+ +     +   + +++      +N    D VV  S   +           L      
Sbjct: 6   YTSGWSMNANNKQMDVISNNLANVSTNGYKKDTVVYESFPNALVRRVNDTESTLNPSGKV 65

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
                 N + ++                +            I             T   +
Sbjct: 66  GDVQLGNDVGQVFTYYTSGQLASTGNNLDLAIGSSDSAFFTIGVPSENGELTEYYTRDGS 125

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD-PVAGINTNVTL 400
               S    +   G +       +   +    +++      N   +    +       TL
Sbjct: 126 FCLNSAKQLVTSEGYMVMGTDGPITLESENFSVLDDGSIVQNGQVVDKLAIKDFTDTSTL 185

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            ++  N I               + Q     + + Y     VN+  E+  +I V ++Y  
Sbjct: 186 RKFGENLI---------QTTEETQEQEFNGVVKQGYLEQSNVNVVNEMINMITVMRAYES 236

Query: 461 SNKLIMFTDKMLQTLLE 477
           + K+I   D  L+  + 
Sbjct: 237 NQKVIQALDGTLEKAVN 253


>gi|300854230|ref|YP_003779214.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM
           13528]
 gi|300434345|gb|ADK14112.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM
           13528]
          Length = 255

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 66/267 (24%), Gaps = 22/267 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++  F  A +       +   I  N+ NA+   + + D               +S N  +
Sbjct: 1   MIRSFYSAVSGMITQEAKQDVITNNLANANTVGFKQDDLR------------VKSFNDML 48

Query: 63  FDKVLHAHSSAI-----GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                    +       G   L    +++K   +     +   +   +       +    
Sbjct: 49  LQNYDKTEGNRSVRNIIGSISLGSGIDSVKTGFTQGSIDSTGVSTDFAIDGRGFFTVRGQ 108

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
             ++   +    +        N +   V           E+ + N      +   +N   
Sbjct: 109 DGKEYYTRDGHFHVNTNGVLVNDAGDSVLARNTRTGALGEMNVGNGNMTSDDHGNINIDG 168

Query: 178 KFKTASKHDAHDFLDQRDVLLQKI-----SEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                      +  +    +   +     +    +    ++     V   +  +   T  
Sbjct: 169 TPSYKLYTVDFNDYNTLTKVGDNLYTGTNAAETNVVVRQKSLEKSNVNIVNTMSQLMTTM 228

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVV 259
           R    ++    ++      +  +G  V
Sbjct: 229 RSFETDQKAVQSIDETLEKLINEGGKV 255


>gi|319765009|ref|YP_004128946.1| flagellar basal body rod protein [Alicycliphilus denitrificans
          BC]
 gi|330827204|ref|YP_004390507.1| flagellar basal body rod protein [Alicycliphilus denitrificans
          K601]
 gi|317119570|gb|ADV02059.1| flagellar basal body rod protein [Alicycliphilus denitrificans
          BC]
 gi|329312576|gb|AEB86991.1| flagellar basal body rod protein [Alicycliphilus denitrificans
          K601]
          Length = 107

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQR 56
          ++  + + A++    A  +  S   N+ N     + R+      +P    V   T R
Sbjct: 7  TMTPLASIARSGLQAAQLRLDSSAHNVANLGTPGFARQAVDQQAAPAQGGVQARTGR 63


>gi|146295640|ref|YP_001179411.1| flagellar basal body rod protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409216|gb|ABP66220.1| flagellar basal body rod protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 257

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/144 (5%), Positives = 21/144 (14%), Gaps = 21/144 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       NI N     + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDLTANNIANVSTTGFKRDIAQVESFRRMMTHKIYDDSSNSI 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                             +    +       +        F A+ E +            
Sbjct: 61  DNAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIRGSGFFAV-EKVDPQTGQAQVYYT 119

Query: 103 YISKLRDSLESYSKNLSEDILGKT 126
                  +       L    +   
Sbjct: 120 RNGAFTLNSNGELVTLEGFRVLGQ 143



 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            D   +       + + Y     VN  +E+  +I V ++Y  + K  +  D+ LQ  + 
Sbjct: 194 ADAQSQQIAFSGRVLQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFIAQDETLQKAVN 252


>gi|284041496|ref|YP_003391836.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684]
 gi|283945717|gb|ADB48461.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684]
          Length = 245

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 5/62 (8%), Positives = 27/62 (43%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +    +      + +       V++ + +  ++  ++++ ++++ I   D+ML+   + 
Sbjct: 184 PESGAATATNGATLRQGTLEGSNVDMSDAMVDMMNAQRAFQLASRAIHMQDQMLEVANQV 243

Query: 479 VK 480
            +
Sbjct: 244 KR 245


>gi|323706570|ref|ZP_08118123.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534077|gb|EGB23875.1| protein of unknown function DUF1078 domain protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 59

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           Q    ++ + +  T  V +  E+  +I  +++Y +++K I   D ML       +
Sbjct: 5   QGRMGNVRQGFLETSNVQVVNEMVNMIAAQRAYELNSKAIQAADDMLSIANNLRR 59


>gi|125972984|ref|YP_001036894.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          ATCC 27405]
 gi|256004781|ref|ZP_05429756.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          DSM 2360]
 gi|281417195|ref|ZP_06248215.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          JW20]
 gi|125713209|gb|ABN51701.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          ATCC 27405]
 gi|255991231|gb|EEU01338.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          DSM 2360]
 gi|281408597|gb|EFB38855.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          JW20]
 gi|316940780|gb|ADU74814.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum
          DSM 1313]
          Length = 147

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 13/81 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          M      + + +       +  +I +NI NA+         Y R+  +        +   
Sbjct: 1  MGYFTSLDISASALTAQRLRMDTISQNIANANTTRTENGQPYRRKTVLFEEKSSTGS--- 57

Query: 55 QRSENKNMFDKVLHAHSSAIG 75
                   +  +   ++  G
Sbjct: 58 ----FSEYLENSIRGKTAGAG 74


>gi|170747255|ref|YP_001753515.1| flagellar basal body rod protein FlgF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653777|gb|ACB22832.1| flagellar basal body rod protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 246

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/189 (6%), Positives = 33/189 (17%), Gaps = 6/189 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +        +      ++   I  N+ N     +  R+T        V      +     
Sbjct: 1   MQNALFVGVSSQMALQRELDVIANNMANVSTTGFKARNTRFEEYLMPVASADSFARPDRR 60

Query: 63  FDKVLHAHSS------AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              V+   ++       I Q     +         A                   +    
Sbjct: 61  LSYVIDQGTTLDLGQGPIEQTGNPLNVAVKGSAFIAVQSPQGERYTRNGAFELDAQGTLV 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 +       +    +       +         +     ++            N  
Sbjct: 121 TSDGYKVVGEGGPISINPQETGLAIGPDGTVSTNLGIRGRIKLVTFANPQRLTNEGANLY 180

Query: 177 IKFKTASKH 185
              + A   
Sbjct: 181 ASPEPARAA 189


>gi|51894143|ref|YP_076834.1| flagellar basal body and hook proteins [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857832|dbj|BAD41990.1| flagellar basal body and hook proteins [Symbiobacterium
           thermophilum IAM 14863]
          Length = 231

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 22/53 (41%)

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            L +        +         V+L +E++ LI   ++Y ++ + +   D+ L
Sbjct: 169 RLALADAAPETRLHSRRLEASNVDLAKEMTDLIVTLRAYQVNQRALRVQDETL 221



 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 13/40 (32%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42
          ++     +++       +   +  NI N +   + R    
Sbjct: 1  MIRGIEASRSGMAVEQLRTDVLADNIANMNTSGFKRATAT 40


>gi|317121025|ref|YP_004101028.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis
           DSM 12885]
 gi|315591005|gb|ADU50301.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis
           DSM 12885]
          Length = 249

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 45/219 (20%), Gaps = 16/219 (7%)

Query: 3   LLAVFNKAQNICNN---ASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENV 50
           +L     A +         ++ A    ++ N +   Y     +T   P            
Sbjct: 1   MLRGLYTAASGMLARVLQQERLA---NDLANVNTPGYKASRNVTEAFPELFVARLERAGA 57

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             V        + +  L   +    +    Q      +                      
Sbjct: 58  APVGPVGTGAVVAEPGLDLTAGPWLETGRPQDLALAGDGFFVVMGPAGPAYTRAGNFTVG 117

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
            E Y +      +  T       V     T   + Q             ++         
Sbjct: 118 PEGYLQTPDGWPVLGTDGQPL-LVGTADFTVTPDGQVQAGGVVVGTVARVTFANPAALRK 176

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
              N  +    A      D   ++ VL Q   + +    
Sbjct: 177 AGDNLLVDPGGAGPAVPVDTPVRQGVLEQSNVDPVRTVV 215


>gi|89895707|ref|YP_519194.1| hypothetical protein DSY2961 [Desulfitobacterium hafniense Y51]
 gi|89335155|dbj|BAE84750.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 251

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 44/208 (21%), Gaps = 32/208 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---------------------- 40
           ++            A  Q   I  N+ N     Y   +                      
Sbjct: 1   MIKGLYTGAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTSTENEIPG 60

Query: 41  -TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
            T+       V V      N      VL                   +E+    D  N  
Sbjct: 61  NTLIGGIGTGVVVDQITRMN---VRGVLQTTDIPTDLA------LTAEEVFLVVDTPNGE 111

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +L+ + E   +      +                 +   +       D+   ++
Sbjct: 112 RYTRNGQLQLNSEGMLQTADGYPVLGEEGPIGPLSKNFQVDAQGGITDQGVTMDRLRLVQ 171

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDA 187
           +  +       ++       +  + ++A
Sbjct: 172 VPAVGLLREGQSLYASNQPVQDFAGNEA 199



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                + +       VNL  ++  +I V ++Y  + K+I   D  L+  + 
Sbjct: 195 AGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKVIQTHDATLEKAVN 245


>gi|42522133|ref|NP_967513.1| flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100]
 gi|39574664|emb|CAE78506.1| Flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100]
          Length = 271

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 53/243 (21%), Gaps = 8/243 (3%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVR-RDTMTTISPENVTVVTQRSE--NKNMFD 64
             A +     S +  +I  N+ N +   + R +         N  +        +    +
Sbjct: 7   YTALSGAMAQSTKLDTIANNLANVNTPAFKRDQQLFQEYLTANEKMPETTQIPRDVAAIE 66

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
              +             +F    +        +           +             L 
Sbjct: 67  SFYNMQGGDKSYVDTKGTFTDFSQGGLKPTGNSLDVAIDGKGFFE-----IATPGGVKLT 121

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
           ++     +   Q        V +            I         +    D  +      
Sbjct: 122 RSGNFTLDGSGQLVTKEGYPVLRQGEAGSDPAGRVIRFTGNGAVAIADNGDVYEGTENLG 181

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
             +   ++  D L +  S +      +  +   +   S      ET   +I  E  +  +
Sbjct: 182 KLSLVNVNNPDSLQKTGSSLYTFKPNIAPDMQNIANPSLKQGFLETSNVNIVQEMTDMIS 241

Query: 245 VTS 247
              
Sbjct: 242 TNR 244



 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 7/204 (3%)

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
           +Q  D      +    + ++  +        +A + +         G   L       + 
Sbjct: 71  MQGGDKSYVDTKGTFTDFSQGGLKPTGNSLDVAIDGKG-FFEIATPGGVKLTRSGNFTLD 129

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            +  +  +         + GS     +             N       +N     +  +N
Sbjct: 130 GSGQLVTKEGYPVLRQGEAGSDPAGRVIRFTGNGAVAIADNGDVYEGTENLGKLSLVNVN 189

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
              +L +   +   +      D  ++          + + +  T  VN+ +E++ +I   
Sbjct: 190 NPDSLQKTGSSLYTFKPNIAPDMQNIANP------SLKQGFLETSNVNIVQEMTDMISTN 243

Query: 456 QSYNISNKLIMFTDKMLQTLLEGV 479
           + +  + K I   D+M   ++  V
Sbjct: 244 RVFESTQKAISAYDQMADKMINVV 267


>gi|119384846|ref|YP_915902.1| flagellar basal body rod protein FlgF [Paracoccus denitrificans
           PD1222]
 gi|119374613|gb|ABL70206.1| flagellar basal body rod protein [Paracoccus denitrificans PD1222]
          Length = 238

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 29/121 (23%), Gaps = 6/121 (4%)

Query: 3   LLAVFNKAQ---NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
           +      A    +      ++  ++  NI NA+   + R   + +     +    +    
Sbjct: 1   MDNAIYAALTRQSGLM---REMHTVANNIANANTTGFRREGVVFSEYMVPLDRRGETLAM 57

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            N   +++      + Q           E          +          + E    N  
Sbjct: 58  ANGRGRMIDLGPGGMTQTNGQFDLAIDGEGFLMVQTPQGNRLTRAGAFMTNAEGELVNPD 117

Query: 120 E 120
            
Sbjct: 118 G 118



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 56/216 (25%), Gaps = 15/216 (6%)

Query: 258 VVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA--GNSENVP 315
             +         G ++ +  + +++             V        D         N  
Sbjct: 2   DNAIYAALTRQSGLMREMHTVANNIANANTTGFRREGVVFSEYMVPLDRRGETLAMANGR 61

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
           G  I  G   +     Q               P   R   + +       + +      +
Sbjct: 62  GRMIDLGPGGMTQTNGQFDLAIDGEGFLMVQTPQGNRLTRAGAFMTNAEGELVNPDGHQL 121

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS--------DSHDLHMKSQV 427
                +           GI  + T+     N +G +    S        ++  L      
Sbjct: 122 LDDGAAPIVIPAGVGSIGIGADGTISADG-NPVGRVGVFASPDPARLRHEAGTLFDPGGA 180

Query: 428 V----FNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           V       + + +     V+  +E++ +I+V+++Y 
Sbjct: 181 VDPLEGAVLRQGFLEDSNVDPVQEIARMIEVQRAYQ 216


>gi|312621331|ref|YP_004022944.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201798|gb|ADQ45125.1| fagellar hook-basal body protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 255

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 5/143 (3%), Positives = 22/143 (15%), Gaps = 21/143 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       N+ N     + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDLTANNVANVSTTGFKRDVAQIESFRNMLVYRIYDKVTSPD 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                            +    +       +        F  ++  +  +          
Sbjct: 61  NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIE--VPENQGAQQIFYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKT 126
                 +       L+   +   
Sbjct: 119 NGAFTLNSRGELVTLNGFYVLGQ 141



 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             + + Y     VN  +E+  +I V ++Y  + K  +  D+ LQ  + 
Sbjct: 203 GKVLQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFVIQDETLQKAVN 250


>gi|253681880|ref|ZP_04862677.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str.
           1873]
 gi|253561592|gb|EES91044.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str.
           1873]
          Length = 263

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/261 (9%), Positives = 57/261 (21%), Gaps = 26/261 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54
           ++     A +   N       I  N+ N+    Y +        +D M     + V    
Sbjct: 1   MIRGIYTAVSGLINQEAIQDVISNNLANSTTVGYKKDDLITRKFQDVMLHNYDKVVRGKN 60

Query: 55  QRSENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYI 104
            R++   +        +        +        F                 N +     
Sbjct: 61  VRNDIGELSMGSKIDETCTNYSQGVLEDTGKSTDFAIQGNGFFVVSRNDRVNNQNLYTRD 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNA-----EEVVQNFNTSAREVQKIRADADKEIELE 159
                    Y  N S D +    + N        +V N               + +   +
Sbjct: 121 GHFHIDRNGYLVNGSGDKVMGKNLTNGAISPINILVNNSPARMACNDMGEIYLNGKPAFK 180

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           I  +     E       I+    S  +  +  D            + +   V +    + 
Sbjct: 181 IQVVN---FENYKSLRKIQDNLYSGTNPKETNDVIVKQNYLEKSNVNVMAEVSDMMMTMR 237

Query: 220 YTSDGTTLFETVPRDINFEKM 240
                  + + +   +     
Sbjct: 238 NFESNQKVVQALDETLGKTVN 258



 Score = 40.0 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 23/46 (50%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++Y     VN+  E+S ++   +++  + K++   D+ L   + 
Sbjct: 213 VKQNYLEKSNVNVMAEVSDMMMTMRNFESNQKVVQALDETLGKTVN 258


>gi|292669734|ref|ZP_06603160.1| flagellar basal-body rod protein FlgC [Selenomonas noxia ATCC
          43541]
 gi|292648531|gb|EFF66503.1| flagellar basal-body rod protein FlgC [Selenomonas noxia ATCC
          43541]
          Length = 151

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M +    + A +       +   I  NI NA+         Y RR  +  
Sbjct: 1  MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQ 50



 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +E +RS    ++       N   + Y     VN+  E+  +I   + Y  +   I     
Sbjct: 82  IETDRSQGTLVYEPGHPDANA--DGYVERPNVNIVAEMVDMISASRGYEANATTINAAKS 139

Query: 471 M 471
           M
Sbjct: 140 M 140


>gi|223040701|ref|ZP_03610970.1| flagellar basal-body rod protein [Campylobacter rectus RM3267]
 gi|222878065|gb|EEF13177.1| flagellar basal-body rod protein [Campylobacter rectus RM3267]
          Length = 270

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 52/246 (21%), Gaps = 29/246 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   + R D +                    
Sbjct: 1   MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDVVVGDFERIFKEYRDELPIKNH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD--H 95
                   +     V     +  +     L   ++ +      +    L E+   D    
Sbjct: 61  TKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGDVRLT 120

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            N S          + E Y    S+            E  +        +        + 
Sbjct: 121 KNGSFNLDEDGFLVTKEGYKVLPSDYFSNNFQGIQIPEGERFSADKNGNLYSNEEPLARL 180

Query: 156 IELEISNLRRFLSELTVVN--DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
              +   +R    E   +     +K       +      +   +    +    +  I   
Sbjct: 181 YIAQPKEIRNLTKEGDNLYVLPNLKELEDVGGEIDAVAWKYTQISNVNAVTEMVGLIETQ 240

Query: 214 NNDMVV 219
               + 
Sbjct: 241 RFVEMY 246


>gi|149203126|ref|ZP_01880097.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035]
 gi|149143672|gb|EDM31708.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035]
          Length = 237

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/120 (9%), Positives = 27/120 (22%), Gaps = 10/120 (8%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   +  NI NA    Y +   + +   +          + +M    +   
Sbjct: 12  QSGLL---RELQVVANNIANAATTGYRQEGLIFSEFVKRTEGG----PSLSMARGNVRMT 64

Query: 71  SSAIGQQRLLQSFEAL---KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
           S+  G          L    +     +               S +          +    
Sbjct: 65  STLQGPLTPTGGMLDLAIEGDGFFLIETPAGERLTRAGSFTLSAQGDLVTPDGFRVLDAG 124


>gi|254470342|ref|ZP_05083746.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062]
 gi|211960653|gb|EEA95849.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062]
          Length = 246

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/188 (7%), Positives = 49/188 (26%), Gaps = 3/188 (1%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVL 67
              +  +   +    +  N+ N +   Y  +  +              +  ++ +     
Sbjct: 7   IGLSRQSALRRNLDVVANNLANINTTGYKAQRLIFEEYLMPTAQATEFQRPDRPLSFTQD 66

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              ++ + Q  +  +   L   +  D +   +      +      S + +    ++    
Sbjct: 67  VGTATVLTQGSIQLTGNPLDVAIEGDGYLAVT-GAEGEQFYTRAGSLAIDPEGTLVTDGG 125

Query: 128 IDN-AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           +   A+      N    E+   +       + EI  L  +  +       +     S  +
Sbjct: 126 LPVLADGAPIQINPEDGEITITKEGVISTGQGEIGRLDVYTFDNRQELKHVGVNLFSGLN 185

Query: 187 AHDFLDQR 194
                +  
Sbjct: 186 PIPANNPT 193


>gi|332531619|ref|ZP_08407516.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC
           19624]
 gi|332038982|gb|EGI75411.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC
           19624]
          Length = 246

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 32/152 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A    N A  + + +  N+ N     +    +     P      T R      
Sbjct: 1   MDRIIYTAMTGANAAQHRQSVLSNNLANVSTNGFRAELSTYRAVPLRGEGATTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 A   ++   R L +        +                  S +   +  +   
Sbjct: 61  TAGQRDAPGPSMRTGRDLDAMPQQSSWFAVQGLDGGEAYTRNGSFEVSPQGVLQTSNGLP 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           L                +   +       A +
Sbjct: 121 LLSDGGSPITVPENAVVSLGSDGTISAQSAGQ 152


>gi|89069819|ref|ZP_01157154.1| putative flagellar basal body rod protein [Oceanicola granulosus
           HTCC2516]
 gi|89044620|gb|EAR50736.1| putative flagellar basal body rod protein [Oceanicola granulosus
           HTCC2516]
          Length = 239

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/117 (6%), Positives = 17/117 (14%), Gaps = 3/117 (2%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+       +   I  NI NA    Y     + +     +              +     
Sbjct: 12  QSGLMA---EMRLIANNIANAATTGYRSEGVIFSEYVSALGPGHDSLSMARAAVRDTDIS 68

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              +             E                     +            +    
Sbjct: 69  PGGMTATGGAFDLAIEGEGFFLVQTPGGERLTRAGHFMPNANGDLVTPDGYPVLDAG 125


>gi|330880524|gb|EGH14673.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 52

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +I+        V+L  EL  LIK + +Y  + K I     ++QT ++ 
Sbjct: 1   TLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 51


>gi|331269339|ref|YP_004395831.1| flagellar basal-body rod protein FlgG [Clostridium botulinum
           BKT015925]
 gi|329125889|gb|AEB75834.1| flagellar basal-body rod protein FlgG [Clostridium botulinum
           BKT015925]
          Length = 262

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 75/253 (29%), Gaps = 6/253 (2%)

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
             +  G          I+    NS TV  +   +  + ++  +      P  K +   Q+
Sbjct: 6   WNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQGKRQV 65

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             S V   + + D     L+ + +  D             +    +    +      +  
Sbjct: 66  TGSGVKSTELERDNAQGNLLQTNNNTDLAIDGKGY--FKVVDGTGRTFYTRGGSFNIDPS 123

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                   N   + +                 +    + Y  S        P+     + 
Sbjct: 124 GTVVDKNGNKLVILNENGTDVNKTGAGFTKDSFKVSEDGYIWSDKHRGFRIPIYDTIGDN 183

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
           ++     N    L    +  +D+          + + ++    V+L +E+S LI  ++++
Sbjct: 184 SMKSIGENLYVPL-TQGNGRNDVIESKDF---SLLQGFTEQSNVDLGKEMSDLIITQRAF 239

Query: 459 NISNKLIMFTDKM 471
            +++  +   D+M
Sbjct: 240 QLNSSALKTADEM 252



 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 31/143 (21%), Gaps = 31/143 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     +++       +  +I  N+ N+    Y R D                      
Sbjct: 1   MLRSIWNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQ 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                +   V       +N       L   ++        + +  + +          + 
Sbjct: 61  GKRQVTGSGVKSTELERDN---AQGNLLQTNNNTDLAIDGKGYFKVVD------GTGRTF 111

Query: 101 THYISKLRDSLESYSKNLSEDIL 123
                           + + + L
Sbjct: 112 YTRGGSFNIDPSGTVVDKNGNKL 134


>gi|192290239|ref|YP_001990844.1| hypothetical protein Rpal_1843 [Rhodopseudomonas palustris TIE-1]
 gi|192283988|gb|ACF00369.1| protein of unknown function DUF1078 domain protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 273

 Score = 52.0 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 70/243 (28%), Gaps = 9/243 (3%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                  K  +   +    P  +   V+  +  +   +G I          +        
Sbjct: 30  NAQTTAFKATNTAFSDLIYPPQVSDTVLWRSVLTNGQQGSISYDPVSTHMAIGGEGYFTV 89

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           E    +  S       +  +    G F       ++      +   I        +   L
Sbjct: 90  EAPSGVSASGQPTFSTSETTYTRRGDFDLKNGYLVNGAGYYLMGSQIDPVTGAVGSTGPL 149

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   S +   L  +++L+           S  +      +       ++  +A       
Sbjct: 150 QFDTSTALPDLGVLQSLSVSSSGKLQGTYSKGQTVDVASL-------SIASFAGQGFMKQ 202

Query: 412 EKNR--SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S +        V    +  S      V++ ++++ +++ +Q+Y+   +++  ++
Sbjct: 203 GSGGTFSPTPQSGPALYVNAGTVVGSALEASNVDIADQMTTMVQAQQAYSACTRVVTASN 262

Query: 470 KML 472
           +M+
Sbjct: 263 EMM 265



 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/277 (9%), Positives = 61/277 (22%), Gaps = 11/277 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M  L     A       S  F +I  N+ NA    +   +T  +       V        
Sbjct: 1   MGSLGALWTATTGLQAQSAAFENISGNVANAQTTAFKATNTAFSDLIYPPQVSDTVLWRS 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS- 119
            + +        +I    +        E     +  +            S  +Y++    
Sbjct: 61  VLTNGQ----QGSISYDPVSTHMAIGGEGYFTVEAPSGVSASGQPTFSTSETTYTRRGDF 116

Query: 120 ----EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                 ++           +     +      ++ D    +          +S    +  
Sbjct: 117 DLKNGYLVNGAGYYLMGSQIDPVTGAVGSTGPLQFDTSTALPDLGVLQSLSVSSSGKLQG 176

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
                      +            K       S   ++     +Y + GT +   +    
Sbjct: 177 TYSKGQTVDVASLSIASFAGQGFMKQGSGGTFSPTPQSG--PALYVNAGTVVGSALEASN 234

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
                   T+            VV+++    +    +
Sbjct: 235 VDIADQMTTMVQAQQAYSACTRVVTASNEMMLTMTSL 271


>gi|295400717|ref|ZP_06810694.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|312112591|ref|YP_003990907.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1]
 gi|294977298|gb|EFG52899.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|311217692|gb|ADP76296.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1]
          Length = 274

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47
          +L  F  A +      ++   +  NI NA+   Y          P
Sbjct: 1  MLRGFYTAASGMMAQQRRVEMLTNNIANANTPGYKADQAALRAFP 45



 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/197 (7%), Positives = 54/197 (27%), Gaps = 4/197 (2%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           +     Q  + +  +  I        IA  +  +P           +       +     
Sbjct: 76  NTGVYMQELIPDFRQGDIKETGRPTDIALINGALPAAGGTLFFVVQNENGDIRYTRNGNF 135

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
               +   +       + +           +    +    + N       +A      TL
Sbjct: 136 TVNPQGFLTTNDGWYVLDENGQRIALPSEDFTVNADGTIVAGNARIARINIAFAANPNTL 195

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           ++          ++ +      + +  V     + +     V+L   ++ ++   +++  
Sbjct: 196 VKEGNGLF----RSEAGMLPSALNNPNVTYTFKQGFVERSNVDLNRAMTEMLSAYRAFEA 251

Query: 461 SNKLIMFTDKMLQTLLE 477
           + K++   DK ++  + 
Sbjct: 252 NQKIVQAYDKSMEKAVN 268


>gi|260431752|ref|ZP_05785723.1| flagellar basal-body rod protein FlgC [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260415580|gb|EEX08839.1| flagellar basal-body rod protein FlgC [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 128

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          M   +       +     + +   +  NI NAD   Y R+       
Sbjct: 1  MGDFSKSLEVTASALRAQAARLRHVSENISNADTPGYRRKTVPFEAV 47


>gi|224370168|ref|YP_002604332.1| FlgG1 [Desulfobacterium autotrophicum HRM2]
 gi|223692885|gb|ACN16168.1| FlgG1 [Desulfobacterium autotrophicum HRM2]
          Length = 117

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                +L  E +  I  ++++  + + I   D+ML TLL+ V
Sbjct: 75  ELSNTDLAGEFTDQIITQRAFEANTRTIQTEDQMLGTLLDIV 116



 Score = 36.9 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 15/44 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +    N + +       + A    N+ N  + ++ +   + T  
Sbjct: 1  MGFAINTSASALKAFGTKMAVSANNVANVYSDDFKKSRALVTEG 44


>gi|319790435|ref|YP_004152068.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1]
 gi|317114937|gb|ADU97427.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1]
          Length = 238

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/107 (6%), Positives = 21/107 (19%), Gaps = 4/107 (3%)

Query: 20  QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76
           Q  +   N+ N +   + R    +    + P                   +      + +
Sbjct: 21  QLDTTTNNLANVNTPGFKRIIEEEMSQHVPPNGSDAYNM-LIFPRFKSTQVVLSEGPLRK 79

Query: 77  QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
                          A    N            +      + + + +
Sbjct: 80  TDSPFDLALKGRGFFAVKTPNGELYTRNGHFTLNANGVLVDANGNPV 126


>gi|254504490|ref|ZP_05116641.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11]
 gi|222440561|gb|EEE47240.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11]
          Length = 246

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 23/142 (16%), Gaps = 7/142 (4%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
              +  +    Q   +  N+ N +   +  +  +       V   T+          VL 
Sbjct: 7   IGLSRQSALRNQLDVVANNMANINTTGFKSQRLLFEEYLMPVAEATEFQTPDETLSYVLD 66

Query: 69  AHS------SAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLSED 121
             S       A              E                                  
Sbjct: 67  YQSITDFDTGAFKMTGNDLDLAIEGEGFFVVQMGDGTEAYTRDGAFVIDQNGQLVTSDGR 126

Query: 122 ILGKTVIDNAEEVVQNFNTSAR 143
            +  T               A+
Sbjct: 127 PVMTTGGPITFSAEDGSVEIAK 148


>gi|114706769|ref|ZP_01439669.1| flagellar basal-body rod protein C [Fulvimarina pelagi HTCC2506]
 gi|114537717|gb|EAU40841.1| flagellar basal-body rod protein C [Fulvimarina pelagi HTCC2506]
          Length = 138

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
          L++    A +     S +   +  N+ NA+          YVR+      + + VT    
Sbjct: 5  LVSSLKIAASGMEAQSTRLRVVSENVANAETTGDTPGADPYVRKTVTFGATLDEVTGANL 64

Query: 56 RSENKNMFDK 65
                  DK
Sbjct: 65 VRVTDIGTDK 74



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +++D    +       +     Y     VN+  E+  + +  +SY  + ++I  
Sbjct: 67  VTDIGTDKADFESTYDPGNPAAD--ENGYVKRPNVNMLTEMMDMREANRSYEANIQVIKQ 124

Query: 468 TDKMLQTLLEGVK 480
             +++   ++ ++
Sbjct: 125 AREIINMTIDLLR 137


>gi|310644367|ref|YP_003949126.1| flagellar basal body rod protein [Paenibacillus polymyxa SC2]
 gi|309249318|gb|ADO58885.1| Flagellar basal body rod protein [Paenibacillus polymyxa SC2]
          Length = 294

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 64/241 (26%), Gaps = 6/241 (2%)

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S T  +  NP    G + +           I+  L+               +     G  
Sbjct: 50  SMTGGNPDNPDRTVGKLNTGVFAEESLSPYIQGALKDSGQTTDFALQSNINVNDPATGRP 109

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
              D           +                +  T   + Q     + L   GS     
Sbjct: 110 MAFDQAGKFINANGEVTYRPEAFFTVRDNNGNVRYTRDGHFQVNGTGALLSSTGSAVLDT 169

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-----GWLEKNRS 416
             N   L G    +         +   + + G    +++++     +      +   +  
Sbjct: 170 NGNPIQLTGSVSALKVNERGQLVDSQSNQLLGTTLGISVIDRPYQLVREGNGNFRLNDTD 229

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +    M +      + + Y     V+  + +  ++   ++Y  + K+I F DK L   +
Sbjct: 230 GATARMMTANDTV-SVRQGYLEVSNVDAAQSMVDMMAALRAYEANQKVIQFYDKSLDKAV 288

Query: 477 E 477
            
Sbjct: 289 N 289



 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 38/157 (24%), Gaps = 7/157 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56
           +L     A        ++  ++ +NI N +   Y + +++    P               
Sbjct: 1   MLRGLYTAAAGMMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPD 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH-YISKLRDSLESYS 115
                +   V    S +   Q  L+      +     +   N P          + +  +
Sbjct: 61  RTVGKLNTGVFAEESLSPYIQGALKDSGQTTDFALQSNINVNDPATGRPMAFDQAGKFIN 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
            N       +      +       T     Q     A
Sbjct: 121 ANGEVTYRPEAFFTVRDNNGNVRYTRDGHFQVNGTGA 157


>gi|320354341|ref|YP_004195680.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122843|gb|ADW18389.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM
           2032]
          Length = 244

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 29/141 (20%), Gaps = 2/141 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +      Q  +++  N+ N     + +               +        
Sbjct: 1   MGSGKYSALSGAVAREQAMSNVAANLANVSTTGFKKDRISFAAILRGAQQASDARGINFA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKE--MMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
             + +    S  G Q   +  +   +            +      +L        K    
Sbjct: 61  RIRKIGVDFSQGGMQPTDRPLDVAIDGPGFFKVRKGGETFYTRSGRLMLDDNGMVKTEDG 120

Query: 121 DILGKTVIDNAEEVVQNFNTS 141
             +     +  +         
Sbjct: 121 LNVLGAGNEPLQIDTALGKDI 141


>gi|218672515|ref|ZP_03522184.1| flagellar basal body rod protein FlgG [Rhizobium etli GR56]
          Length = 58

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 10/41 (24%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A    +        I  NI N +   + R     T  
Sbjct: 3  ALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDL 43


>gi|78042758|ref|YP_359838.1| flagellar basal-body rod protein FlgC [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77994873|gb|ABB13772.1| flagellar basal-body rod protein FlgC [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 138

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 14/69 (20%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTIS-------- 46
          M+  + F    +          +IV NI NA+         Y R+D +            
Sbjct: 1  MAFFSSFQITASALTAHRLWLDTIVDNIANANTTRTPAGGTYNRKDVIFEEILEAKAGFK 60

Query: 47 PENVTVVTQ 55
             V V   
Sbjct: 61 GGGVRVSQI 69



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+ +E+  L+  +++Y  +  +      M    LE  +
Sbjct: 99  NVNINDEIVNLLAAQRAYEANVTVFNTAKAMYAKALELSR 138


>gi|56695101|ref|YP_165448.1| flagellar basal body rod protein FlgF [Ruegeria pomeroyi DSS-3]
 gi|56676838|gb|AAV93504.1| flagellar basal-body rod protein FlgF [Ruegeria pomeroyi DSS-3]
          Length = 216

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 23/102 (22%), Gaps = 7/102 (6%)

Query: 25  VRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE 84
             NI N+    Y ++  + +         +    + +M    +   S   G         
Sbjct: 2   ANNIANSATSGYRQQGLVFSEFVRGGLGTS----SLSMARGQVRNTSQEQGVLTQTGGDF 57

Query: 85  AL---KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
            L    E     +               + +    N     L
Sbjct: 58  DLAIDGEGFFMLETPGGERLTRAGSFTPNAQGDLVNPDGYRL 99


>gi|83647172|ref|YP_435607.1| flagellar basal body rod protein FlgF [Hahella chejuensis KCTC
           2396]
 gi|83635215|gb|ABC31182.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396]
          Length = 248

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/170 (6%), Positives = 35/170 (20%), Gaps = 17/170 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIV--RNIENADNKNYV------RRDTMTTISPENVTVVT 54
           +      A +         +      N+ NA+   +       R   +      +     
Sbjct: 1   MDKALYIAMSG--AKQNMLSQRGHANNLANANTTGFKSDFMQARSMPVFGEHYPSRAYAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     L      +        + A++                  +L   +   
Sbjct: 59  TERPATDFEMGSLMQTGRDLDVAVAGNGWIAVQ------APDGGEAYTREGELLLDVNGV 112

Query: 115 SKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +  S   +       A     +        +  +    + +   E+  +
Sbjct: 113 LRTGSGLPVLGNGGPIAVPPAAKLNIGVDGTISIVPLGGNPDEIQEVDRI 162


>gi|144900468|emb|CAM77332.1| Flagellar basal-body rod protein FlgC [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 137

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 13/71 (18%)

Query: 9  KAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMT------TISPENVTVVTQ 55
           A +     S++   I  N+ NAD      +   Y R+                V V   
Sbjct: 10 IAISGMKAQSERLRVISENLANADSLARTPDGTPYKRKVVTFKSELDRANGYTGVKVDKV 69

Query: 56 RSENKNMFDKV 66
          R +      + 
Sbjct: 70 RPDASEFQRRY 80



 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E+  + + ++SY  +  +I  + ++L   +E ++
Sbjct: 97  NVNPLIEMMDMREAQRSYEANMNVINSSRQLLSRTVEMLR 136


>gi|58039418|ref|YP_191382.1| flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H]
 gi|58001832|gb|AAW60726.1| Flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H]
          Length = 246

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 66/228 (28%), Gaps = 8/228 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +  +   +  + +  N+ NA    Y R + + +    +     Q       
Sbjct: 1   MENSTYIALSRMDAQQRAMSVVAANMSNASTVGYKRENVLFSDFLSHQHGSKQPEGADTE 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                 A      Q  +  +   L      E        N        +  +  +    +
Sbjct: 61  SYTQDRATYRDFQQGDMQSTGNPLDLALGGEGYFQVRTANGVRLTRAGRFEEQQDGAIVD 120

Query: 118 LSEDIL---GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
            + + L       I+  +   +   ++   +     +  +   +   +  R  +E + + 
Sbjct: 121 ENGNALLDRDGQPIELPQTDHRITISADGVISTETGEQGQIGIVTAQDNNRLQAEGSRLL 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
            + +  TA +             +Q ++E+  +  I RN + M  +  
Sbjct: 181 RSDQPTTAVERPNIVQGMVEGSNVQMMTEVTQMMEIQRNFDFMAQFVD 228


>gi|219670131|ref|YP_002460566.1| hypothetical protein Dhaf_4121 [Desulfitobacterium hafniense DCB-2]
 gi|219540391|gb|ACL22130.1| protein of unknown function DUF1078 domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 251

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 44/208 (21%), Gaps = 32/208 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD---------------------- 40
           ++            A  Q   I  N+ N     Y   +                      
Sbjct: 1   MIKGLYTGAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTNTENEIPG 60

Query: 41  -TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
            T+       V V      N      VL                   +E+    D  N  
Sbjct: 61  NTLIGGIGTGVVVDQITRMN---VQGVLQTTDIPTDLA------LTAEEVFLVVDTPNGE 111

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                 +L+ + E   +      +                 +   +       D+   ++
Sbjct: 112 RYTRNGQLQLNSEGMLQTADGYPVLGEEGPIGPLSKNFQVDAQGGITDQGVTMDRLRLVQ 171

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDA 187
           I  +       ++       +  + ++A
Sbjct: 172 IPAVGLLREGQSLYASNQPVQDFAGNEA 199



 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                + +       VNL  ++  +I V ++Y  + K+I   D  L+  + 
Sbjct: 195 AGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKVIQTHDATLEKAVN 245


>gi|303248256|ref|ZP_07334519.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
          fructosovorans JJ]
 gi|302490394|gb|EFL50305.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
          fructosovorans JJ]
          Length = 128

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 27/91 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          +    + AQ+     S   A    N+ N +   Y  +D   +  P+              
Sbjct: 1  MTDAISAAQSALGAMSTSMAVTANNVANVNTDGYKSQDARLSTGPDGQGTQVSSIVEDTS 60

Query: 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSAD 93
             +     +A  Q    +    + EM + D
Sbjct: 61 AGALRAETVAAENQAGAYEPQMDMVEMSNVD 91



 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/126 (9%), Positives = 34/126 (26%)

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
              ++S                 N+  +     +                   + +    
Sbjct: 1   MTDAISAAQSALGAMSTSMAVTANNVANVNTDGYKSQDARLSTGPDGQGTQVSSIVEDTS 60

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +  +  ++Q               V+L  +   +I+  +++  +  +I   D+M 
Sbjct: 61  AGALRAETVAAENQAGAYEPQMDMVEMSNVDLVRQNVNMIQDSRAFEANVAVIRTADEMA 120

Query: 473 QTLLEG 478
            TLL+ 
Sbjct: 121 GTLLDL 126


>gi|313895777|ref|ZP_07829331.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|320529388|ref|ZP_08030476.1| flagellar basal-body rod protein FlgB [Selenomonas artemidis
          F0399]
 gi|312975202|gb|EFR40663.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|320138354|gb|EFW30248.1| flagellar basal-body rod protein FlgB [Selenomonas artemidis
          F0399]
          Length = 140

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 13/43 (30%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
           +  +        AS +   +  NI N +  N+ R        
Sbjct: 8  SSTLDIGSRALAAASLRHEVLSNNIANVNTPNFRRSHVRFEDL 50


>gi|167945455|ref|ZP_02532529.1| flagellar hook protein FlgE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 188

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 2/154 (1%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            S       AG+  +   + +             G++       Q+ S+ +         
Sbjct: 37  SSNGALSTGAGDVTSGGLVPLDTFTPSGGAAPISGLNFNYVNTTQFGSSFAVNDLTQDGF 96

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +  ++     +   + +  +       +A  N N  L +       W+E   S  
Sbjct: 97  TSGRLSGVDVDSEGVVFARFTNGRSVGLGKVAMARFNNNQGLRQVGD--TRWVESFASGD 154

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
             L       F  +         V+L E+L  LI
Sbjct: 155 VQLGEAGTSSFGLMQSGALENSNVDLAEQLVNLI 188


>gi|126738582|ref|ZP_01754287.1| flagellar basal-body rod protein FlgC [Roseobacter sp. SK209-2-6]
 gi|126720381|gb|EBA17087.1| flagellar basal-body rod protein FlgC [Roseobacter sp. SK209-2-6]
          Length = 130

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 1  MSLL-AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43
          MS      N   +     +++   +  NI NAD   Y R+    
Sbjct: 1  MSEFANSLNVTASGLKAQAKRLRHVSENISNADTPGYRRKTVPF 44


>gi|90021857|ref|YP_527684.1| flagellar basal body rod protein FlgC [Saccharophagus degradans
          2-40]
 gi|89951457|gb|ABD81472.1| flagellar basal-body rod protein FlgC [Saccharophagus degradans
          2-40]
          Length = 144

 Score = 51.6 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL  +F+ A +  N  S +  +   NI NA+  +      Y  R  +            
Sbjct: 1  MSLSGIFDTAGSGMNAQSVRLNTTASNIANAETASSSADTVYRGRHPVFATVQAGYMQGQ 60

Query: 55 QRSENKN 61
            + +  
Sbjct: 61 VGALDDE 67



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 24/38 (63%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +S+ ++ +++    +M+Q +L+ 
Sbjct: 105 NVNIVEEMANMISASRSFQMNVEVMNSAKQMVQRVLQL 142


>gi|226225740|ref|YP_002759846.1| flagellar basal-body rod protein FlgC [Gemmatimonas aurantiaca
          T-27]
 gi|226088931|dbj|BAH37376.1| flagellar basal-body rod protein FlgC [Gemmatimonas aurantiaca
          T-27]
          Length = 183

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN--YVRRDTMTTISPE 48
          +      A +  +   Q+  +I +NI NAD         Y RR+ +   +  
Sbjct: 4  MFKSMGIAASGISAQRQRMETIAQNIANADVTRGTDGTPYKRREVVLESATA 55


>gi|255322393|ref|ZP_05363539.1| flagellar basal-body rod protein [Campylobacter showae RM3277]
 gi|255300766|gb|EET80037.1| flagellar basal-body rod protein [Campylobacter showae RM3277]
          Length = 270

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 52/246 (21%), Gaps = 29/246 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   + R D +                    
Sbjct: 1   MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDVVVGDFERIFKEYRDELPIENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD--H 95
                   +     V     +  +     L   ++ +      +    L E+   D    
Sbjct: 61  TKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGDVRLT 120

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            N S          + E Y    S+            +  +        +        + 
Sbjct: 121 KNGSFNLDEDGFLVTKEGYKVLPSDYFTNNFQGIQIPQGERFSADKNGNLYSNEEPLARL 180

Query: 156 IELEISNLRRFLSELTVVN--DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
              +   +R    E   +     +K       +      +   +    +    +  I   
Sbjct: 181 YIAQPKEIRNLTKEGDNLYVLPNLKELEDVGGEIDAVAWKYTQISNVNAVTEMVGLIETQ 240

Query: 214 NNDMVV 219
               + 
Sbjct: 241 RFVEMY 246


>gi|95929847|ref|ZP_01312588.1| flagellar basal-body rod protein FlgC [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134143|gb|EAT15801.1| flagellar basal-body rod protein FlgC [Desulfuromonas acetoxidans
          DSM 684]
          Length = 143

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT 44
          M +    N + +       +  +I  N+ NA+     +   Y R+  +  
Sbjct: 1  MDIFTSLNISSSALKAQRIRLDTISSNMANAETTRTPEGGPYRRKMVVFE 50


>gi|218463663|ref|ZP_03503754.1| hypothetical protein RetlK5_31494 [Rhizobium etli Kim 5]
          Length = 106

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
          MS+  + N A +     + +  +I  NI N+   +Y R +T  T            
Sbjct: 1  MSISGITNTALSGMRAQTTRIGAIANNIANSSTPDYARLNTSLTAVTSGGVKAVVS 56


>gi|325288806|ref|YP_004264987.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964207|gb|ADY54986.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 257

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/186 (8%), Positives = 37/186 (19%), Gaps = 38/186 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----------------------- 39
           ++     A       +QQ  +I +NIEN     Y R+                       
Sbjct: 1   MIRGLYTAAAGMLANNQQSDTIDQNIENLKTPGY-RQASEKLQAFPAMLVERMEPSSTEP 59

Query: 40  ----DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDH 95
                T        V + +   ++      +L    +        + +        A   
Sbjct: 60  VVMERTPIGSLGTGVQIESVMYQDGP---GMLRETGNQTDVAITARGY-------FAVST 109

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            +                  +  S   +                     +     + + +
Sbjct: 110 PDGERYTRSGHFLLDSAGGLRTPSGCPVLGQNGPVGPIPENFEIREDGTMINKEDNMEVD 169

Query: 156 IELEIS 161
               + 
Sbjct: 170 RLRLVD 175



 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 412 EKNRSDSHDLHMKSQVVFN------HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
              R     L   S+ V +       + + Y     VNL  ++  +++V +SY+ + K++
Sbjct: 180 ALQREGDTLLFSSSEGVVDIPAGEVRLKQGYVEESNVNLNAQIVKMLEVVRSYSANQKVV 239

Query: 466 MFTDKMLQTLLE 477
              D +LQ  + 
Sbjct: 240 QTNDSLLQKAVN 251


>gi|254499121|ref|ZP_05111811.1| putative flagellar basal body rod protein [Legionella drancourtii
           LLAP12]
 gi|254351660|gb|EET10505.1| putative flagellar basal body rod protein [Legionella drancourtii
           LLAP12]
          Length = 237

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 2/125 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +       Q   +    +  SI +NI N +   + R+  +   +  ++ +    ++    
Sbjct: 1   MFDAITATQLAMDYDQLKLQSISQNISNMNTPGFKRQ--LIENAGFDMHLQANVNQVAQQ 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++        I Q +         E                   + + +      + + 
Sbjct: 59  LEQSHLKAQGLINQTKNPTDLALCGEGYFQVQGEQGIFYTRRGDFQVNNQGELTTATGET 118

Query: 123 LGKTV 127
           +    
Sbjct: 119 VLGKG 123



 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 21/51 (41%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                + + +     V   +E+  ++K  + +  + +++   D +L T + 
Sbjct: 180 GANTQVHQGFIEQSNVKSIDEMMDMVKTSRHFEANQRIMRTADNLLATAIN 230


>gi|238927420|ref|ZP_04659180.1| flagellar basal body rod protein [Selenomonas flueggei ATCC
          43531]
 gi|238884702|gb|EEQ48340.1| flagellar basal body rod protein [Selenomonas flueggei ATCC
          43531]
          Length = 151

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVV 53
          M +    + A +       +   I  NI NA+         Y RR  +     +   + 
Sbjct: 1  MGMFLGIDAAASGLTAERLRMDVISNNIANANTTRTQGGGAYHRRYVVFQPREKGTGIG 59


>gi|209963564|ref|YP_002296479.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW]
 gi|209957030|gb|ACI97666.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW]
          Length = 248

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/118 (6%), Positives = 30/118 (25%), Gaps = 6/118 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQ--R 56
           +      A +      +       N+ N +   +     +       + +   V     R
Sbjct: 1   MENSLYVALSQQMAVRRMLDVTANNVANMNTAAFRAERPVFDAFVEKAGKGQKVAFVIDR 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           +   +  D  + +  + +       ++ ++          +            +L+ Y
Sbjct: 61  ATYTDTRDGTVASTGNPLDVAVRGDAWLSVATPDGIRYTRDGRLNRDPDGRLVTLDGY 118


>gi|157738153|ref|YP_001490837.1| flagellar basal body rod protein FlgC [Arcobacter butzleri
          RM4018]
 gi|157700007|gb|ABV68167.1| flagellar basal body rod protein FlgC [Arcobacter butzleri
          RM4018]
          Length = 154

 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          M     +N A +  +    +   +  NI NA   +      Y +++ +    
Sbjct: 1  MGFFDGYNVATSGMSAQRTRINVVSANIANAKTTHTAEGGPYKKQEVVFEDV 52


>gi|15887904|ref|NP_353585.1| flagellar basal body rod protein FlgF [Agrobacterium tumefaciens
           str. C58]
 gi|2459708|gb|AAB71784.1| FlgF [Agrobacterium tumefaciens]
 gi|15155496|gb|AAK86370.1| flagellar basal body rod protein [Agrobacterium tumefaciens str.
           C58]
          Length = 244

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 51/216 (23%), Gaps = 11/216 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           + +    A +      ++  +I  N+ N +   +   +              N  V    
Sbjct: 1   MQSGLYVALSSQIALERRLTTISDNMANVNTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             N  +  +       A  Q      F    +   A D  +        +     +    
Sbjct: 61  QGNDYLSTRQ-----GAFEQTGNSFDFAIKGDAWFALDTPDGQILTRDGRFTMRPDGALI 115

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           + S   +                 +      IR +      L I         L   N  
Sbjct: 116 SSSGYPVLDAGGGPIRLNPNGGPITVGLDGAIRQNDTIAASLGIFQADFSKGFLRHPNSG 175

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
           +K         ++          + S + GIS + +
Sbjct: 176 VKPVAQPVPVVNNHEVGVVQGYLEQSNVNGISQMTQ 211


>gi|206896029|ref|YP_002246681.1| flagellar basal-body rod protein FlgC [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206738646|gb|ACI17724.1| flagellar basal-body rod protein FlgC [Coprothermobacter
          proteolyticus DSM 5265]
          Length = 134

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 12/65 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS------PE 48
          MS  ++   A +       +   I  NI N +     +   Y R+              +
Sbjct: 1  MSGFSLLRIAGSALTAQRFRMDVISSNIANLETTRTPEGGPYHRKIVSFQSMMVGENQGQ 60

Query: 49 NVTVV 53
           V V 
Sbjct: 61 GVKVA 65


>gi|89895737|ref|YP_519224.1| hypothetical protein DSY2991 [Desulfitobacterium hafniense Y51]
 gi|89335185|dbj|BAE84780.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 176

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/108 (9%), Positives = 28/108 (25%), Gaps = 15/108 (13%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKN-----YVRRDTMTTISPE 48
           M +    + + +       +   I  NI N +        +      Y R+  +      
Sbjct: 1   MGIFGSMDISASGLTAQRLRLDVISNNIANINTTRTGQLTEGGNQIPYQRQVVVFKARGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
             +                 + ++ +  Q  L +     E+ +  +  
Sbjct: 61  ESSFAE---TLNQALQGRSVSTTALLQGQTTLGTTGNGVEVQAIAEDT 105


>gi|190891944|ref|YP_001978486.1| flagellar basal body rod protein [Rhizobium etli CIAT 652]
 gi|190697223|gb|ACE91308.1| probable flagellar basal body rod protein [Rhizobium etli CIAT
          652]
          Length = 100

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV 52
          MS+  + N A +     + +  +I  N+ N+    Y R +T  T +   V  
Sbjct: 1  MSISGITNIALSGMRAQATRIGAIANNVANSSTSGYARLNTGLTSTEPGVQA 52



 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/111 (10%), Positives = 26/111 (23%), Gaps = 13/111 (11%)

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
               + N                  N   +           L         +   +    
Sbjct: 2   SISGITNIALSGMRAQATRIGAIANNVANSSTSGYARLNTGLTSTEPGVQAIVEPTT--- 58

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                       V+   EL+ +I+ EQ+Y  +  +      M + L+   +
Sbjct: 59  ----------SDVDPATELTEMIEAEQAYKANAAVFETGADMWEMLMSIKR 99


>gi|302872573|ref|YP_003841209.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          obsidiansis OB47]
 gi|302575432|gb|ADL43223.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          obsidiansis OB47]
          Length = 145

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          +    N + +       +   I +NI NA+         Y R+  +   
Sbjct: 1  MFDAINISSSALTAQRVRMDVIAQNIANANTTRTESGQPYRRKIVVFEE 49


>gi|315636296|ref|ZP_07891546.1| flagellar basal-body rod protein FlgC [Arcobacter butzleri JV22]
 gi|315479385|gb|EFU70068.1| flagellar basal-body rod protein FlgC [Arcobacter butzleri JV22]
          Length = 154

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          M     +N A +  +    +   +  NI NA   +      Y +++ +    
Sbjct: 1  MGFFDGYNVATSGMSAQRTRINVVSANIANAKTTHTAEGGPYKKQEVVFEDV 52


>gi|323490137|ref|ZP_08095357.1| flagellar hook-basal body protein [Planococcus donghaensis
          MPA1U2]
 gi|323396185|gb|EGA89011.1| flagellar hook-basal body protein [Planococcus donghaensis
          MPA1U2]
          Length = 280

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +    N A N  +   ++   I  NI N +   Y R++   + +
Sbjct: 1  MNIQMNTASNTMSELQKKLDLIGNNIANVNTNGYKRQEASFSDA 44



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            I +++     V+L +E++ LI  ++ +    + I + D M+
Sbjct: 231 QIKQNFLEMSNVDLSDEMTELITTQRLFQSQGRAISYADDMM 272


>gi|325473784|gb|EGC76972.1| FlgC protein [Treponema denticola F0402]
          Length = 151

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51
          M L    N A         +   I  NI NA +    +   + R   +       + 
Sbjct: 1  MGLFTSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRVIVGQKKSGID 57



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E Y     VN+  E+  LI   ++Y  +  ++     M Q  L+  +
Sbjct: 104 KEGYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRALDIAR 151


>gi|320354701|ref|YP_004196040.1| hypothetical protein Despr_2613 [Desulfobulbus propionicus DSM
          2032]
 gi|320123203|gb|ADW18749.1| protein of unknown function DUF1078 domain protein [Desulfobulbus
          propionicus DSM 2032]
          Length = 117

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 19/57 (33%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          +++    A +     S +  S   NI N + + Y +   + +         T    +
Sbjct: 1  MISGIQSALSGAQAFSAKIESNAHNIANLNTEGYRKSRVVLSAGVAQSVQATVGRVD 57



 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               V+L EE+  L++    Y  + + +  +D MLQTLL+  
Sbjct: 75  ELSNVDLGEEIPDLMRNTHGYAANLRTVQVSDNMLQTLLDIK 116


>gi|42526722|ref|NP_971820.1| flagellar basal body rod protein FlgC [Treponema denticola ATCC
          35405]
 gi|41817037|gb|AAS11731.1| flagellar basal-body rod protein FlgC [Treponema denticola ATCC
          35405]
          Length = 151

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51
          M L    N A         +   I  NI NA +    +   + R   +       + 
Sbjct: 1  MGLFTSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRVIVGQKKSGID 57



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E Y     VN+  E+  LI   ++Y  +  ++     M Q  L+  +
Sbjct: 104 KEGYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRALDIAR 151


>gi|229166585|ref|ZP_04294337.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH621]
 gi|228616839|gb|EEK73912.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH621]
          Length = 137

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI N +         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNVNTTGAPGAEPYHRRSVVLESN 50


>gi|167750732|ref|ZP_02422859.1| hypothetical protein EUBSIR_01710 [Eubacterium siraeum DSM 15702]
 gi|167656411|gb|EDS00541.1| hypothetical protein EUBSIR_01710 [Eubacterium siraeum DSM 15702]
 gi|291532066|emb|CBK97651.1| flagellar basal-body rod protein FlgC [Eubacterium siraeum 70/3]
          Length = 160

 Score = 51.2 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M+ L+  N A +       +   I +N+ NA          Y R+  + + +
Sbjct: 1  MAFLSSLNIAASGMAAERLRLDVISQNVANAKTTRTEDGTPYRRQVVLFSEN 52


>gi|312880336|ref|ZP_07740136.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260]
 gi|310783627|gb|EFQ24025.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260]
          Length = 264

 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/148 (6%), Positives = 29/148 (19%), Gaps = 23/148 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +        +      +    +  N+ N D   +  R  +                    
Sbjct: 1   MFRGIYSGTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEVLMDRVERYPEEGI 60

Query: 46  -----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNS 99
                +P     +   S    + +  +      +            +E      D   N+
Sbjct: 61  GPKRFNPRGRVPIGTLSLANVLHETAMRTAPGVMQVTNAPLDVALQEEGFFVVQDGAGNT 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTV 127
                   + + +         ++    
Sbjct: 121 FYTRSGHFQKNDQGQLVTHDGMLVQGDG 148



 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
           +++ D     +V    ++  +     VN+ EE+S +I+  ++Y ++ K +   D++   L
Sbjct: 197 AETPDSGAPEEVEQPKVAVGFLERSNVNVVEEMSRMIEANRAYEVAAKTVTIQDELTSRL 256


>gi|297617136|ref|YP_003702295.1| flagellar basal-body rod protein FlgC [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144973|gb|ADI01730.1| flagellar basal-body rod protein FlgC [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 145

 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M  L  F+ + +       +   I  N+ N +         Y R+  +   
Sbjct: 1  MRFLNAFDISASGMTAQRLRMDVISNNLANVNTTRTPQGGPYRRQMVIFEA 51


>gi|120601522|ref|YP_965922.1| hypothetical protein Dvul_0472 [Desulfovibrio vulgaris DP4]
 gi|120561751|gb|ABM27495.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
          vulgaris DP4]
          Length = 125

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 2/52 (3%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQR 56
           +      +           NI N +   +    T     P    V V   R
Sbjct: 3  IDTGWAALDAFGIGLGVTANNIANVNTDGFRASQTRYETGPGGEGVRVGEIR 54



 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 18/42 (42%)

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                +   E+  +++ ++++  +   I   D M   +L+ +
Sbjct: 83  EGSNTDTAREMVSMMETQRAHEANVASIRAHDDMTGVVLDIM 124


>gi|94500239|ref|ZP_01306772.1| flagellar basal-body rod protein FlgC [Oceanobacter sp. RED65]
 gi|94427538|gb|EAT12515.1| flagellar basal-body rod protein FlgC [Oceanobacter sp. RED65]
          Length = 148

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MSL  VFN A    N  S +  +   NI NA+  
Sbjct: 1  MSLTNVFNVAGTGMNAQSVRLNTTASNIANAETV 34



 Score = 45.0 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ ++   +SY ++ +++    +MLQ  L
Sbjct: 109 NVNIVEEMTDMMSSSRSYQMNVEMMKTAKQMLQRTL 144


>gi|167037671|ref|YP_001665249.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167040332|ref|YP_001663317.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp.
          X514]
 gi|256750738|ref|ZP_05491623.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300914416|ref|ZP_07131732.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp.
          X561]
 gi|307264864|ref|ZP_07546426.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|307724348|ref|YP_003904099.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp.
          X513]
 gi|320116086|ref|YP_004186245.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
 gi|326389485|ref|ZP_08211052.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          ethanolicus JW 200]
 gi|166854572|gb|ABY92981.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp.
          X514]
 gi|166856505|gb|ABY94913.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|256750321|gb|EEU63340.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300889351|gb|EFK84497.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp.
          X561]
 gi|306920122|gb|EFN50334.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|307581409|gb|ADN54808.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp.
          X513]
 gi|319929177|gb|ADV79862.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
 gi|325994490|gb|EGD52915.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 147

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+L +  + + +       +   I +NI N +  
Sbjct: 1  MNLFSSMDISASGLTAERLRMDIIAQNIANVNTT 34



 Score = 40.0 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E+  +I   ++Y  +      +  M Q  LE  +
Sbjct: 99  QNGYVEYPNVNIVSEMVDMISATRAYEANVTAFNASKAMFQKSLEIGR 146


>gi|145298492|ref|YP_001141333.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851264|gb|ABO89585.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 248

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 12/134 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R          +       
Sbjct: 1   MDHMLYIAMSGAKENMNSLAVRGNNLANANTVGFKSDFEQARSMQAFGEGLPSRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +N+   +L      +      Q + A+++               +  L+ S     +
Sbjct: 61  RPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQ 114

Query: 117 NLSEDILGKTVIDN 130
             +   +       
Sbjct: 115 TSTGLNVVDDGGQP 128



 Score = 43.9 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +  +      +         VN+ +E++ LI++++ +    K++   ++
Sbjct: 188 QNEAASATVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236


>gi|312126441|ref|YP_003991315.1| fagellar hook-basal body protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776460|gb|ADQ05946.1| fagellar hook-basal body protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 255

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/143 (4%), Positives = 22/143 (15%), Gaps = 21/143 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     + +      +       N+ N     + R                        
Sbjct: 1   MIRGIYTSASGMILNQKLMDITANNVGNVSTTGFKRDVAQVESFRNMLAYRIYDKPSSPD 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                            +    +       +        F A++  M  +          
Sbjct: 61  NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAVE--MPNNQGAQQILYTR 118

Query: 104 ISKLRDSLESYSKNLSEDILGKT 126
                 +       L    +   
Sbjct: 119 NGAFTLNSRGELVTLDGFYVLGQ 141



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I + Y     VN  +E+  +I V ++Y  + K  +  D+ LQ  + 
Sbjct: 203 GKIIQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFVIQDETLQKAVN 250


>gi|302338303|ref|YP_003803509.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM
           11293]
 gi|301635488|gb|ADK80915.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM
           11293]
          Length = 282

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 25/62 (40%)

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
            ++   +  +      + + +     VN   E+  +I+V ++Y  + K +   D +   L
Sbjct: 216 EEAGASNQVALGSETKVVQGFLEGSNVNSVTEMVRMIEVNRAYEANQKAMQTHDALTGRL 275

Query: 476 LE 477
           + 
Sbjct: 276 IN 277



 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
          ++       +   +   +  +I  N+ N D   Y R  +++   P+    +  R  N +
Sbjct: 1  MVRGIYTGASGMVDQMHRMDAISNNLANVDLVGYKRDQSVSKAFPQ----MLIRRMNDD 55


>gi|261409669|ref|YP_003245910.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10]
 gi|261286132|gb|ACX68103.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10]
          Length = 293

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 37/149 (24%), Gaps = 7/149 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT---MTTISPENVTVVTQ 55
           +L     A +      Q+  ++ +NI N +   Y      + +   +             
Sbjct: 1   MLRGLYTAASGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSNV 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
             +       V    S ++  +  L+      +          +P    +   D+   Y 
Sbjct: 61  GRKLGKFNTGVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRYV 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSARE 144
               E I         +    +   +   
Sbjct: 121 DENGEVIYRPEGFFTVQNENGDVRYTRNG 149


>gi|225181613|ref|ZP_03735054.1| flagellar basal-body rod protein FlgC [Dethiobacter alkaliphilus
          AHT 1]
 gi|225167721|gb|EEG76531.1| flagellar basal-body rod protein FlgC [Dethiobacter alkaliphilus
          AHT 1]
          Length = 136

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 13/74 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI-------SP 47
          M +    N + +       +   I  NI NA          Y R+  +          S 
Sbjct: 1  MQIFKAMNVSSSGLTAERFRLDLIANNIANAHTTRTEDGGPYQRKSAVFAEVMDGARKSG 60

Query: 48 ENVTVVTQRSENKN 61
          + V V     +N  
Sbjct: 61 QGVRVQGVSVDNTE 74



 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            VN+ +E+  +I   ++Y  +   +  +  M 
Sbjct: 96  NVNIVQEMVDMITATRAYEANVTALNASKNMF 127


>gi|167630286|ref|YP_001680785.1| flagellar basal-body rod protein flgb, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167593026|gb|ABZ84774.1| flagellar basal-body rod protein flgb, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 137

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50
            + AS +   I  N+ N D   Y R++         V
Sbjct: 16 GLDAASTRHQVIADNLANVDTPGYKRKEVQFEDELAAV 53


>gi|254499120|ref|ZP_05111810.1| flagellar basal body rod protein [Legionella drancourtii LLAP12]
 gi|254351659|gb|EET10504.1| flagellar basal body rod protein [Legionella drancourtii LLAP12]
          Length = 258

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/193 (7%), Positives = 49/193 (25%), Gaps = 3/193 (1%)

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             L + ++       +      +       F      D      +  + ++  +    + 
Sbjct: 68  TALYKSSKDFTDGPLKASNNWNDVAINGSGFYQVINTDGSIAYTRNSALSVDADHYLATQ 127

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                       +    +         +    +   +      +A      TL      +
Sbjct: 128 EGLRLADNIQIPEDFTQLTIHTNGNVEVTLVDEPEPQLLGTIQLAKFINPETLNPVGSGT 187

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
                 + S    +          +++       V++   L  L   ++ Y ++ K +  
Sbjct: 188 YTL--TDESSEPLIDNPGSSGLGTLAQYQVEGSNVDMVSSLMQLTMAQRVYQLNAKAVQI 245

Query: 468 TDKMLQTLLEGVK 480
            D+ L+ L   ++
Sbjct: 246 ADE-LEKLTNEIR 257



 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 52/254 (20%), Gaps = 18/254 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN- 61
           +      A +           I  ++ N +  NY                  +   N   
Sbjct: 1   MSNALAIAASGLKAEEYHIDRIANDLANLNTANYKATKLTFEDVLYQNIHGEESLFNNQP 60

Query: 62  ----------------MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYI 104
                             D  L A ++          F  +     +  +  NS  +   
Sbjct: 61  SAKLGLGTALYKSSKDFTDGPLKASNNWNDVAINGSGFYQVINTDGSIAYTRNSALSVDA 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                + E      +  I                 T   E +       +  +       
Sbjct: 121 DHYLATQEGLRLADNIQIPEDFTQLTIHTNGNVEVTLVDEPEPQLLGTIQLAKFINPETL 180

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
             +   T        +    +     L        + S +  +S++++      VY  + 
Sbjct: 181 NPVGSGTYTLTDESSEPLIDNPGSSGLGTLAQYQVEGSNVDMVSSLMQLTMAQRVYQLNA 240

Query: 225 TTLFETVPRDINFE 238
             +      +    
Sbjct: 241 KAVQIADELEKLTN 254


>gi|207093272|ref|ZP_03241059.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1]
          Length = 40

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+L   L+ LI V++ +  ++K +  +D++L TLL   +
Sbjct: 1   NVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLKQ 40


>gi|157363238|ref|YP_001470005.1| hypothetical protein Tlet_0374 [Thermotoga lettingae TMO]
 gi|157313842|gb|ABV32941.1| protein of unknown function DUF1078 domain protein [Thermotoga
           lettingae TMO]
          Length = 249

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 47/214 (21%), Gaps = 10/214 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54
           +L     A         +      N+ N +   Y R                P+    + 
Sbjct: 1   MLRGIYTAAMGMLLDMSKLDVTANNLANVETVAYKRDKLAFRAYQDRAIYALPDRRQPIG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             + +  + D  L +      +      F    E   +    +          + + E Y
Sbjct: 61  NLTYSAVLDDVFLDSSMGTFMKTDNPMDFAIDGEGFFSLLGEDGVYYSRAGNFKLNEEGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             N    ++                 +   ++    +    +   I N         +  
Sbjct: 121 LVNTDGLMVLDENNQPIRFESSYVVDADGYIRDPVGNVITRLG--IYNFDDPGELRKIGY 178

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
              +    S         +      ++S +  I 
Sbjct: 179 TLFQPTEESGQPVVADEFRILSGYVELSNVNAID 212



 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           I   Y     VN  +E+  LI+ ++ + IS K +  +D+ L  L+  V
Sbjct: 198 ILSGYVELSNVNAIDEMVNLIEAQRHFEISQKALTVSDETLAKLISQV 245


>gi|291280053|ref|YP_003496888.1| flagellar basal-body rod protein [Deferribacter desulfuricans SSM1]
 gi|290754755|dbj|BAI81132.1| flagellar basal-body rod protein [Deferribacter desulfuricans SSM1]
          Length = 205

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            I   Y     V+L +E+  +I  +  +  + K     D+ML  ++
Sbjct: 156 EILPGYLEASNVDLAKEIVDMIVTKNYFEANLKTTKVIDEMLGNII 201


>gi|288962677|ref|YP_003452971.1| flagellar basal-body rod protein [Azospirillum sp. B510]
 gi|288914943|dbj|BAI76427.1| flagellar basal-body rod protein [Azospirillum sp. B510]
          Length = 243

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/118 (8%), Positives = 26/118 (22%), Gaps = 1/118 (0%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDK 65
                +      +Q   +  N+ N +   +    T+   +        T R         
Sbjct: 5   LYIGLSRQMALRRQLDVVANNVANMNTAGFRGERTLFEAAMEAGGRKPTDRIAFTIDRAT 64

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
                  A+ +           +   A    +        +LR   +      +   +
Sbjct: 65  YTDLRPGALTETGNPYDVALDGDGFLAVQTPDGVRYTRDGRLRRDADGTLVGPNGYPV 122


>gi|299822258|ref|ZP_07054144.1| flagellar basal body rod protein FlgG [Listeria grayi DSM 20601]
 gi|299815787|gb|EFI83025.1| flagellar basal body rod protein FlgG [Listeria grayi DSM 20601]
          Length = 259

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/169 (8%), Positives = 31/169 (18%), Gaps = 17/169 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  +       NI N++   +           R+      +    T+ + 
Sbjct: 3   GLYIGAAGMMNYMKHLDVHSNNIANSETAGFKFDQLTSQAMSRKQVQFNQADSAKTIGSV 62

Query: 56  ------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                      N+    +      +                        +          
Sbjct: 63  DYAVHPNQTFVNLKQGSMQVTGRDLDFFLHDAD-SEAGSSFFVAGKDGETFLTRGGSFYS 121

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
               + K      L        +   Q   T        RAD ++ +  
Sbjct: 122 DQNGFLKTSDGANLLAENGTAIQVGAQTKITVDTAGNIRRADTNELLGK 170



 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                I      +  V++  E+  L+  ++    S+ +I   D +  
Sbjct: 204 AGRALIQNGVLESSNVDMSTEMVELMDNQRMVQASSNIIKMFDTVYD 250


>gi|302878274|ref|YP_003846838.1| flagellar basal-body rod protein FlgC [Gallionella
          capsiferriformans ES-2]
 gi|302581063|gb|ADL55074.1| flagellar basal-body rod protein FlgC [Gallionella
          capsiferriformans ES-2]
          Length = 134

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPEN---VT 51
          MSL  +FN A +     SQ+   +  N+ NA          Y  +  + + +P     V 
Sbjct: 1  MSLFNIFNVAGSGMAAQSQRLNVVASNLANADSTTGADGKPYRAKQVVFSATPMGSTDVQ 60

Query: 52 VVTQRSENKN 61
           V      ++
Sbjct: 61 GVKVVRVAED 70


>gi|219670161|ref|YP_002460596.1| flagellar basal-body rod protein FlgC [Desulfitobacterium hafniense
           DCB-2]
 gi|219540421|gb|ACL22160.1| flagellar basal-body rod protein FlgC [Desulfitobacterium hafniense
           DCB-2]
          Length = 176

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 39/166 (23%), Gaps = 5/166 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M +    + + +       +   I  NI N +      R    T +   +    Q    K
Sbjct: 1   MGIFGSMDISASGLTAQRLRLDVISNNIANINTT----RTGQLTEAGNQIPYQRQVVVFK 56

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
               +   A +     Q    S  AL +  +      N                  N   
Sbjct: 57  ARGTESSFAETLNQALQGRSVSTTALLQGQTTSGATGNGVEVQAIAEDTLPFRLEYNPDS 116

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKI-RADADKEIELEISNLRR 165
               +T  D                + +    A +  E  ++ L  
Sbjct: 117 PDAAQTTEDGIPAGYVRMPNVNIVTEMVDMISASRAYEANVTALNA 162


>gi|308071139|ref|YP_003872744.1| flagellar basal body rod protein [Paenibacillus polymyxa E681]
 gi|305860418|gb|ADM72206.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681]
          Length = 294

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 63/241 (26%), Gaps = 6/241 (2%)

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S T  +  NP    G + +           I+  L+               +     G  
Sbjct: 50  SMTGGNPDNPGRTVGKLNTGVFAEESLSPYIQGALKDSGQATDFAIQSNINVNDPATGQP 109

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
              D           +                +  T   + Q     + L   GS     
Sbjct: 110 MAFDQAGKFINANGEVTYRPEAFFTVRDSNGNVRYTRDGHFQVNGAGALLSSTGSAVLDT 169

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-----GWLEKNRS 416
             N   L G    +         +   +   G    +++++     I      +   +  
Sbjct: 170 NGNPIQLTGAVSELKVNERGELVDSQSNQTLGTTLGISVIDRPYQLIREGNGNFRLNDTD 229

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +    M +      + + Y     V+  + +  ++   ++Y  + K+I F DK L   +
Sbjct: 230 GATARMMTANDAV-SVRQGYLEVSNVDASQSMVDMMAALRAYEANQKVIQFYDKSLDKAV 288

Query: 477 E 477
            
Sbjct: 289 N 289



 Score = 44.6 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/174 (8%), Positives = 38/174 (21%), Gaps = 13/174 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56
           +L     A        ++  ++ +NI N +   Y + +++    P               
Sbjct: 1   MLRGLYTAAAGLMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPG 60

Query: 57  SENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRD 109
                +   V    S       A+        F     +   D             K  +
Sbjct: 61  RTVGKLNTGVFAEESLSPYIQGALKDSGQATDFAIQSNINVNDPATGQPMAFDQAGKFIN 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +    +         +    N                 + +     ++   + +
Sbjct: 121 ANGEVTYRPEAFFTVRDSNGNVRYTRDGHFQVNGAGALLSSTGSAVLDTNGNPI 174


>gi|160880851|ref|YP_001559819.1| flagellar basal-body rod protein FlgC [Clostridium
          phytofermentans ISDg]
 gi|160429517|gb|ABX43080.1| flagellar basal-body rod protein FlgC [Clostridium
          phytofermentans ISDg]
          Length = 150

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          MS+    N + +  +    +   I +NI N +         Y R+  + +          
Sbjct: 1  MSIFNGMNISASGMSAQRLRMDIISQNIANVETTRDENGNPYRRKTVVFSERESGSFGTV 60


>gi|85706168|ref|ZP_01037263.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217]
 gi|85669332|gb|EAQ24198.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217]
          Length = 237

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 29/120 (24%), Gaps = 10/120 (8%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   +  NI NA    Y +   + +   +          + +M    +   
Sbjct: 12  QSGLL---RELQVVANNIANAATTGYRQEGLIFSEFVKRSEGG----PSLSMAQGNVRMT 64

Query: 71  SSAIGQQRLLQSFEAL---KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
           S+  G  R       L    E     +  +            S +          +    
Sbjct: 65  STVQGPLRPTGGTLDLAIEGEGFFLIETPSGERLTRAGAFTLSAQGDLVTPDGFRVLDAG 124


>gi|329928728|ref|ZP_08282577.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5]
 gi|328937509|gb|EGG33927.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5]
          Length = 296

 Score = 50.8 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 38/150 (25%), Gaps = 7/150 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR----RDT---MTTISPENVTVVT 54
           SLL     A +      Q+  ++ +NI N +   Y      + +   +            
Sbjct: 3   SLLRGLYTAASGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSN 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
              +       V    S ++  +  L+      +          +P    +   D+   Y
Sbjct: 63  AGRKLGKFNTGVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRY 122

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
                E I         +    +   +   
Sbjct: 123 VDENGEVIYRPEGFFTVQNENGDVRYTRNG 152


>gi|332296626|ref|YP_004438549.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179729|gb|AEE15418.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM
           14796]
          Length = 255

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/192 (5%), Positives = 35/192 (18%), Gaps = 7/192 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           +      A +   ++      +  NI N +   +   +                  N   
Sbjct: 1   MDNSIFTAVSGALSSQSALDVVANNISNVNTTGFKESNPTFADVLSQELSFATSRTNPLQ 60

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 +    L      +        F              N+                
Sbjct: 61  IGAGSKLDSTSLSFTQGPVLTTNDPTDFAISGSGFFVVSDGTNTYYTRDGSFSLDSNGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                  +  T  +   +       +          ++      + + +  + +    N 
Sbjct: 121 VTADGLYVQGTNGNINIDTTSKNFVNFTVKPDGSVYSNFSNGQSVLDGKIMVVDFINKNA 180

Query: 176 AIKFKTASKHDA 187
            I     +   +
Sbjct: 181 LINVGGNNFSPS 192



 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 67/241 (27%), Gaps = 3/241 (1%)

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S     +     I  V  +  + S      + +      +                    
Sbjct: 14  SSQSALDVVANNISNVNTTGFKESNPTFADVLSQELSFATSRTNPLQIGAGSKLDSTSLS 73

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
             + P+   ++         G   + +      +     +     N              
Sbjct: 74  FTQGPVLTTNDPTDFAISGSGFFVVSDGTNTYYTRDGSFSLDSNGNLVTADGLYVQGTNG 133

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR--NSIGWLEKNRSDSH 419
             N+   +          D    +   +  + ++  + ++++      I     N S S 
Sbjct: 134 NINIDTTSKNFVNFTVKPDGSVYSNFSNGQSVLDGKIMVVDFINKNALINVGGNNFSPSV 193

Query: 420 DLHMKSQVVFN-HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +      +     I ++       +L  +++ LI  E++Y ++ + I  +D MLQT +  
Sbjct: 194 NSGNPVALSNGYSIIQNALEGSNTDLATQMANLIDYERTYQVNAQAITTSDSMLQTAIGL 253

Query: 479 V 479
           +
Sbjct: 254 I 254


>gi|326202441|ref|ZP_08192310.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM
           2782]
 gi|325987559|gb|EGD48386.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM
           2782]
          Length = 265

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 11/169 (6%)

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           N+ +                       T   +    SN   +   G         +    
Sbjct: 101 NTGDKASPAFFTVGVTNPQDNTMQEFYTKNGSFTLNSNNQLVTGDGYAVLGKKGPITLKQ 160

Query: 370 GYPDLINHYCDSFNKNFIFDP-VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           G   + +      N   +    +A    +  L ++  N +       ++           
Sbjct: 161 GDFTVDSKGNIMQNGAVVDTLRIAQFADSTQLRKFGNNLVQNNGGEVAE----------F 210

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
              + + Y     VN+ +E+  +I V ++Y  + K++   D  L   + 
Sbjct: 211 TGSVIQGYDELSNVNIIDEMVDMITVMRAYEANQKVLQAQDGTLDKAVN 259



 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/252 (7%), Positives = 54/252 (21%), Gaps = 22/252 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46
           ++     +        ++   I  N+ N +   Y +   +                   +
Sbjct: 1   MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTN 60

Query: 47  PENVTV-----VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           P  V                     +              +               N   
Sbjct: 61  PSAVVGSMELSSDVGEVYTYYTPGQIVQTGDRYDLAIKDDNTGDKASPAFFTVGVTNPQD 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEI 160
           + + +      S++ N +  ++         ++           V            ++ 
Sbjct: 121 NTMQEFYTKNGSFTLNSNNQLVTGDGYAVLGKKGPITLKQGDFTVDSKGNIMQNGAVVDT 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             + +F     +          +  +  +F         ++S +  I  +V     M  Y
Sbjct: 181 LRIAQFADSTQLRKFGNNLVQNNGGEVAEFTGSVIQGYDELSNVNIIDEMVDMITVMRAY 240

Query: 221 TSDGTTLFETVP 232
            ++   L     
Sbjct: 241 EANQKVLQAQDG 252


>gi|154253004|ref|YP_001413828.1| flagellar basal body rod protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156954|gb|ABS64171.1| flagellar basal body rod protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 256

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 29/125 (23%), Gaps = 7/125 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT-----ISPENVTVVTQRS 57
           +        +     S++ A+I  NI N +   Y     +        + E+    T R 
Sbjct: 14  MENALLIGLSRQMAMSREMATIANNIANMNTTAYKSEAMLFEEFLAKDASEDSPDSTIRF 73

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                  + L     A+             E     +             +   +     
Sbjct: 74  VQDVGQHRNLRD--GALQTTGNPFDVAITGEGFFRVETGQGVLYTRNGNFQLDADGQLVT 131

Query: 118 LSEDI 122
            + D 
Sbjct: 132 SNGDP 136



 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       VN   E++ +I+V +SY  + KLI   D+M
Sbjct: 205 LVQGALEGSNVNPILEMTNMIEVTRSYASAQKLIDQADQM 244


>gi|315301940|ref|ZP_07872942.1| flagellar basal-body rod protein FlgG [Listeria ivanovii FSL
          F6-596]
 gi|313629693|gb|EFR97824.1| flagellar basal-body rod protein FlgG [Listeria ivanovii FSL
          F6-596]
          Length = 74

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55
          +      A +  N   Q  +    NI NA+   Y ++  +        T+ + 
Sbjct: 1  MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSV 53


>gi|23092316|gb|AAN08641.1| FlgF [Aeromonas hydrophila]
          Length = 248

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 12/134 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R          +       
Sbjct: 1   MDHLLYIAMSGAKENMNSLAVRGNNLANANTIGFKSDFEQARSMQAFGEGLPSRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +N+   +L      +      Q + A+++               +  L+ S     +
Sbjct: 61  RPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQ 114

Query: 117 NLSEDILGKTVIDN 130
             +   +       
Sbjct: 115 TSTGLNVVDDGGQP 128



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
             +      +         VN+ +E++ LI++++ +    K++   ++
Sbjct: 190 EAASANVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236


>gi|291558197|emb|CBL35314.1| flagellar basal-body rod protein FlgC [Eubacterium siraeum
          V10Sc8a]
          Length = 160

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M+ L+  N A +       +   I +N+ NA          Y R+  + + +
Sbjct: 1  MAFLSSLNIAASGMAAERLRLDVISQNVANAKTTRTEDGTPYRRQVVLFSEN 52


>gi|144897831|emb|CAM74695.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 273

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/127 (10%), Positives = 27/127 (21%), Gaps = 4/127 (3%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSENKNMF 63
             A +  N   +Q   I  N+ NA+   Y     M       +  +     ++       
Sbjct: 35  YIALSRQNALWRQLDVIAGNMANANTPGYKSEQMMFREYLMDTRSSDRATGKKLSYVQDI 94

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
             +      A  +           +     +             R        N     +
Sbjct: 95  GLLRDTREGAFTKTDNPLDLALHNDGFFQVETEAGMRYTRNGHFRLDEGGMLVNSQGAAV 154

Query: 124 GKTVIDN 130
             T  + 
Sbjct: 155 MDTGDNP 161


>gi|300024616|ref|YP_003757227.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526437|gb|ADJ24906.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 240

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 46/205 (22%), Gaps = 2/205 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +      +      ++  ++  N+ NA    Y                      ++  
Sbjct: 1   MQSNIYVGLSAQLALQRRLDTVANNVANAGTAGYRAEQMSFEEVLSKSGQTAVSFVSQG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L      I Q           +   A             +++   +    NLS D 
Sbjct: 60  -RTHLSTEGGEITQTDNPLDIAVRGDAWLAIQTPTGPAYTRDGRMQMRADGVLTNLSGDP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                    +        +  +   I  D +      +  + +  +       ++    A
Sbjct: 119 FLDAGGSPVQLDPDGGRITINKAGTIVQDGNNLGAFGLYRMPQGANLTRGHGASVITDQA 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGI 207
           +  +             + S +  I
Sbjct: 179 AVPEIDFLRTGVVQGYVEKSNVNPI 203


>gi|225377359|ref|ZP_03754580.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM
           16841]
 gi|225210784|gb|EEG93138.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM
           16841]
          Length = 196

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                 + +       VN+ +E+  +I + ++Y    K+I   D+ L   +  V
Sbjct: 140 TASDAKVQQGCIEGSNVNVVDEMVKMITISRAYQAGQKVINTVDETLDKTVNQV 193


>gi|114765245|ref|ZP_01444377.1| hypothetical protein 1100011001307_R2601_00410 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542380|gb|EAU45408.1| hypothetical protein R2601_00410 [Roseovarius sp. HTCC2601]
          Length = 249

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 52/230 (22%), Gaps = 18/230 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVV 53
           +      A +      +Q      NI NA++  +     +            + E    V
Sbjct: 1   MDNSTYVAISKLTALERQLDVTANNIANANSSGFKAERVLFETYLQKDDASLAGEGTNYV 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R    +    V+    + +      Q + A +                  +L    + 
Sbjct: 61  LDRGSYVDDTPGVVVQTGNPLDLALTGQGWFAYE------MPDGRMAYGRDGQLVLDAQG 114

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL---RRFLSEL 170
                S   +            +   +       + +  +  +  ++       R     
Sbjct: 115 QVTTASGAQILDLGGAPLNIPPEFAASVTISDDGVISSPEGGVMGQVGIFELPDRQTLSR 174

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                 +    A      +          + S +  ++ + R  N    Y
Sbjct: 175 GGAGMFVPNAEAQGLAPDETGSSVIQGAVESSNVQPVTEVTRLINIQQAY 224


>gi|207110167|ref|ZP_03244329.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 126

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%)

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
           D        +           SN S  ++           +  + G  D+ N        
Sbjct: 2   DNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYD 61

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
           +  F         + + E+ +   G +  +   S  +    + +   I +   +   V++
Sbjct: 62  SVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSISQVSV 121

Query: 445 QEELS 449
            EE+ 
Sbjct: 122 DEEMV 126


>gi|167628970|ref|YP_001679469.1| flagellar basal-body rod protein, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167591710|gb|ABZ83458.1| flagellar basal-body rod protein, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 267

 Score = 50.4 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 2/41 (4%), Positives = 12/41 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43
          ++     + +              N+ N +  ++ +   + 
Sbjct: 1  MIRGLYTSASGMLVQQTNQDVTANNLANVNTVSFKKDRAVF 41



 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            I         VN+ +E+  +I   ++Y  + K I   D  L+
Sbjct: 216 EIRSGALELANVNVVQEMVQMISAARAYEANQKAIQSQDGTLE 258


>gi|253574272|ref|ZP_04851614.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846749|gb|EES74755.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 273

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 44/184 (23%), Gaps = 9/184 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A    +   Q+   +  NI N++   Y R++     +                
Sbjct: 1   MNNTVISAMVSMSGIQQRLDLLADNIANSNTVGYKRKEANFEDTLT--------RVQNQT 52

Query: 63  FDKVLHAHSSAIGQQ-RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
            D  L   ++  G           +    +            ++   +++ S      + 
Sbjct: 53  SDLNLPGRATPSGFTLGFGSRMSQVTVNYAQGSIQETGNMTDLAIQGNAMFSVMLPGGDI 112

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              +    + +    +  ++    Q      + E +         LS     N       
Sbjct: 113 AYTRGGDFHIQPDPDDAESAFLVNQLGYVVLNSEGDSITFPSDAKLSIDAEGNILATNGE 172

Query: 182 ASKH 185
            +  
Sbjct: 173 GTTE 176



 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 61/226 (26%), Gaps = 10/226 (4%)

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           ++++ + + G    S           +  +      +    N  D   +    +      
Sbjct: 50  NQTSDLNLPGRATPSGFTLGFGSRMSQVTVNYAQGSIQETGNMTDLAIQG--NAMFSVML 107

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
             G+     G          D +    +++   V      +         +S     N+ 
Sbjct: 108 PGGDIAYTRGGDFHIQPDPDDAESAFLVNQLGYVVLNSEGDSITFPSDAKLSIDAEGNIL 167

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
              G                   P A +  +  L   A               D     Q
Sbjct: 168 ATNGEGTTEVGRIALLTAER---PDALVQKDGNLFVLAAGL-----DPAEAMVDNLSLPQ 219

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                + +       V+L E ++ +++V+++Y ++ + +   + M+
Sbjct: 220 EQRASLRQGALEASNVDLTEAMAEMLQVQRAYQLTARALTSGETMM 265


>gi|331269338|ref|YP_004395830.1| flagellar basal-body rod protein FlgG [Clostridium botulinum
           BKT015925]
 gi|329125888|gb|AEB75833.1| flagellar basal-body rod protein FlgG [Clostridium botulinum
           BKT015925]
          Length = 263

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 33/149 (22%), Gaps = 18/149 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------RDTMTTISPENVTVVT 54
           ++     A +   N       I  N+ NA    Y +        +D M     + V    
Sbjct: 1   MIRGIYTAVSGLINQEAIQDVISNNLANATTVGYKKDDLITRKFKDVMLHNYDKVVRGKN 60

Query: 55  QRSENKNMFDKVLHAHS------SAIGQQRLLQSFEALKEMMSADD----HYNNSPTHYI 104
            R++   +        +        +        F                 N +     
Sbjct: 61  VRNDIGELSMGSKIDETCTNYSQGVLNDTGKSTDFAIQGNGFFVVSRNGRVNNQNLYTRD 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                    Y  N S D +    + N   
Sbjct: 121 GHFHIDRNGYLVNSSGDKVIGRNLANGAN 149



 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 22/46 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + ++      VN+  E+S ++   +++  + K++   D+ L   + 
Sbjct: 213 VKQNCLEKSNVNVMAEVSDMMMTMRNFESNQKIVQALDETLGKTVN 258


>gi|302392940|ref|YP_003828760.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM
           5501]
 gi|302205017|gb|ADL13695.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM
           5501]
          Length = 245

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 58/184 (31%)

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
              G  ++ D    +          +              +T       RS    L   G
Sbjct: 59  GTAGLGAKVDETVTDFSAGSVHKTDNPFDWAIEGEGFFAVQTPEGIRYTRSGDFTLNQDG 118

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            V  +    V   AG  +++    +  N+N +      ++    +     + +     + 
Sbjct: 119 QVVTQNGNFVLGQAGPLEVVGEQVNVDNQNNLVVDGQVVDQVRVVTFAENDGLVKEGDDL 178

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475
             +        +    I++ Y  +  VN+ E ++ +I+  + Y  + +++   D+ L   
Sbjct: 179 YRATPDVGNQFMATGKINQGYLESSNVNVVESMTNMIEATRHYESNQRVVKAYDQSLDKT 238

Query: 476 LEGV 479
           +  V
Sbjct: 239 VNSV 242



 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 42/199 (21%), Gaps = 14/199 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV--------------RRDTMTTISPE 48
           +L     A +  N + ++   I  N+ N+    Y               RR     +   
Sbjct: 1   MLRGLYTAASGMNASLKRTNIITNNLANSTTPGYKKDQTVNKSFSEMLLRRMPDKEVIGT 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                       +     +H   +        + F A++         +   T       
Sbjct: 61  AGLGAKVDETVTDFSAGSVHKTDNPFDWAIEGEGFFAVQTPEGIRYTRSGDFTLNQDGQV 120

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            +            L         +   N     + V ++R     E +  +        
Sbjct: 121 VTQNGNFVLGQAGPLEVVGEQVNVDNQNNLVVDGQVVDQVRVVTFAENDGLVKEGDDLYR 180

Query: 169 ELTVVNDAIKFKTASKHDA 187
               V +            
Sbjct: 181 ATPDVGNQFMATGKINQGY 199


>gi|163939550|ref|YP_001644434.1| flagellar basal body rod protein FlgC [Bacillus
          weihenstephanensis KBAB4]
 gi|229132557|ref|ZP_04261406.1| Flagellar basal-body rod protein FlgC [Bacillus cereus
          BDRD-ST196]
 gi|163861747|gb|ABY42806.1| flagellar basal-body rod protein FlgC [Bacillus
          weihenstephanensis KBAB4]
 gi|228650903|gb|EEL06889.1| Flagellar basal-body rod protein FlgC [Bacillus cereus
          BDRD-ST196]
          Length = 137

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTGAPGAEPYHRRSVVLESN 50


>gi|2105146|gb|AAB57897.1| FlgC [Treponema denticola]
          Length = 151

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVT 51
          M L    N A         +   I  NI NA +    +   + R   +       + 
Sbjct: 1  MGLFTSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRVIVGQKKSGID 57



 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            E Y     VN+  E+  LI   ++Y  +  ++     M Q  L+  +
Sbjct: 104 KEGYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRALDIAR 151


>gi|289805731|ref|ZP_06536360.1| flagellar hook-associated protein FlgK [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 71

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTV 52
          + ++ N A +  N A     ++  NI N +   Y R+ T+   +             V V
Sbjct: 1  MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYV 60

Query: 53 VTQRSENKNMF 63
             + E   ++
Sbjct: 61 SGVQREYDVVY 71


>gi|169831914|ref|YP_001717896.1| flagellar basal-body rod protein FlgB [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638758|gb|ACA60264.1| flagellar basal-body rod protein FlgB [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 132

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 29/121 (23%), Gaps = 14/121 (11%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV---TVVTQRS 57
           MSLLA         +  + +   I  NI N +   + R         +     + V  + 
Sbjct: 8   MSLLA------RALDGQAVRQRVIAHNIANLNTPGFKRSRVDFQAFMQAALDDSAVRMKR 61

Query: 58  ENKNMFDKVLHAHSSAI-----GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
            +           +        G  +         E    +   N      I +   S  
Sbjct: 62  TDPRHLAGRAGDDNGPQVEIVRGTSQRADGNNVDLEREMVELVDNVLGYRAIGQFWSSKY 121

Query: 113 S 113
            
Sbjct: 122 G 122


>gi|90418393|ref|ZP_01226305.1| flagellar basal-body rod protein flgC [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90338065|gb|EAS51716.1| flagellar basal-body rod protein flgC [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 138

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 13/74 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTT------ISPEN 49
          LL+    A +     S +   +  NI NA           Y R+              + 
Sbjct: 5  LLSSLKIAASGLQAQSTRMRIVSENIANAQTTGTTPGSDPYQRKMVSFQSELDRVSGAQM 64

Query: 50 VTVVTQRSENKNMF 63
          V+V     ++    
Sbjct: 65 VSVDKVGRDDTPFI 78


>gi|326791545|ref|YP_004309366.1| flagellar basal-body rod protein FlgC [Clostridium lentocellum
          DSM 5427]
 gi|326542309|gb|ADZ84168.1| flagellar basal-body rod protein FlgC [Clostridium lentocellum
          DSM 5427]
          Length = 145

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          M      + A +       +   I +N+ N +     +   Y R+  +    
Sbjct: 1  MGFFDSMDIAASGLTAQRLRLDIISQNMANVNTTRTAEGGPYKRKTVIFEQM 52


>gi|157164118|ref|YP_001467097.1| flagellar basal-body rod protein [Campylobacter concisus 13826]
 gi|112799948|gb|EAT97292.1| flagellar basal-body rod protein [Campylobacter concisus 13826]
          Length = 269

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 58/231 (25%), Gaps = 27/231 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATAGMVTQFNRLNVISNNLANVNTIGYKRNDVVIGDFARIFKETQDELPLKNH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HY 96
                   +     V     E  +         S+ +      +    L +  +      
Sbjct: 61  TKDGAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDAFFLVDTPNGVKLSK 120

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           N S +        + E Y    S             +V Q    +  +   + ++ ++  
Sbjct: 121 NGSFSLDGDGYIVTKEGYRVLPSGYEAQNPG-QRGIQVPQGEVLTGDKNGNLYSNNNQFS 179

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
           +  I+  R       V ++  + +        D  D       ++S +  +
Sbjct: 180 KFYIAQPREIRDLKKVGDNLFETRNFDDITELDEADSVMQGYAQMSNVNPV 230


>gi|295688785|ref|YP_003592478.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC
           21756]
 gi|295430688|gb|ADG09860.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC
           21756]
          Length = 245

 Score = 50.4 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/195 (7%), Positives = 42/195 (21%), Gaps = 17/195 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTT------ISPENVTV 52
           +        +      ++   +  NI NA+   +        T  +           V  
Sbjct: 1   MDNALYVGLSRQLTLRRELDVVANNIANANTTGFKVEDLMVRTEQSKPAKTLDGSAPVKF 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V      ++     +             + F  ++         N        +   + E
Sbjct: 61  VLDSGVARDFTQGAMTKTGGDFDLAIEGKGFFRVQ-------TANGDRYTRDGRFTTNPE 113

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                 S   +                 S  +   +   A +  ++ +       S    
Sbjct: 114 GQLVTQSGHPVLDEGGGPINIDPTLGQVSIGKDGIVTQGAVRVGKIAVVRPDNLASMAKD 173

Query: 173 VNDAIKFKTASKHDA 187
            ++  +  T +    
Sbjct: 174 GDNLYRNTTNATLQP 188


>gi|220903670|ref|YP_002478982.1| hypothetical protein Ddes_0391 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867969|gb|ACL48304.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 265

 Score = 50.0 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/229 (8%), Positives = 52/229 (22%), Gaps = 21/229 (9%)

Query: 12  NICNNASQ---QFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------------ 56
           +    A     +   I  N+ NA+ + Y R       +         R            
Sbjct: 7   SGLFAALTTEHRMNFIANNLANANTRGYKRDTVAFKDTMVTYAFDEIREPLMNLKSKPLF 66

Query: 57  -----SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYISKLRDS 110
                +    +    +     ++             E                      S
Sbjct: 67  PEPLNASRVRLAVSKIDFAQGSMQYSGNPLDMAINGENAFFRVATPTGDFLTRNGAFVLS 126

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
                       L      N        +       ++ AD D   ++ + ++    +  
Sbjct: 127 ENGTIMTPQGYPLQAQGGGNIVIPQGTRHIQVSGDGQVIADNDVLGQIALVSVDNPQNLE 186

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
            + N+  + +   +    +   +   + Q  +E   +  +    N + V
Sbjct: 187 KMGNNLYRPRENVQVAEGNAYLEGGRIEQGFTEAANVEVVPEMVNMIEV 235



 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/189 (7%), Positives = 51/189 (26%), Gaps = 6/189 (3%)

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   + +L            +      +                 + L +  +  +  N 
Sbjct: 70  LNASRVRLAVSKIDFAQGSMQYSGNPLDMAINGENAFFRVATPTGDFLTRNGAFVLSENG 129

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
              +         +     +   +         +    + N       +  ++    L +
Sbjct: 130 TIMTPQG--YPLQAQGGGNIVIPQGTRHIQVSGDGQVIADNDVLGQIALVSVDNPQNLEK 187

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N      + R +       + +    I + ++    V +  E+  +I+V++ +    
Sbjct: 188 MGNNLY----RPRENVQVAEGNAYLEGGRIEQGFTEAANVEVVPEMVNMIEVQRQFEAYQ 243

Query: 463 KLIMFTDKM 471
           K++  +D +
Sbjct: 244 KVMQTSDTL 252


>gi|296531728|ref|ZP_06894556.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC
           49957]
 gi|296267944|gb|EFH13743.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC
           49957]
          Length = 252

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 1/119 (0%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
           + +      QQ   +  N+ NA    Y    T+       + V  +           +  
Sbjct: 8   SLSGQLALRQQMDVVANNLANATTSGYRGDRTLFQSYVTRLAVPGREIAFVQDRATYIEN 67

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNLSEDILGKTV 127
               IG            E          +P      + +   ++   +     +    
Sbjct: 68  RQGPIGSTGNPLDLAIEGEAFFGVQRPGGAPGYTRDGRFKIRPDNVLADSQGRAVLGEG 126


>gi|95929873|ref|ZP_01312614.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM
          684]
 gi|95134169|gb|EAT15827.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM
          684]
          Length = 242

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 9/95 (9%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENVTVV 53
          + +      +      Q    +  N+ NA+   Y +     +              V   
Sbjct: 1  MSSGIYATLSGAVARMQTVDVVTNNLSNANTLGYKKDRVQFSAVLDSAKQNQQAGGVNYS 60

Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88
                 +    VL    +          F  ++ 
Sbjct: 61 YVEVAKTDYSQGVLIDTRNEYDVAINGNGFFKVRN 95


>gi|229058378|ref|ZP_04196762.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH603]
 gi|228719887|gb|EEL71477.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH603]
          Length = 137

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTGAPGAEPYHRRSVVLESN 50


>gi|330809229|ref|YP_004353691.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377337|gb|AEA68687.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 236

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/165 (9%), Positives = 41/165 (24%), Gaps = 4/165 (2%)

Query: 21  FASIVRNIENADNKNYVRRDT--MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78
             ++ +N+ NA+   Y    T  +   +     V      +       +     A+    
Sbjct: 19  LKAVSQNVANANTVGYKAERTFNVMASNVAGPGVAGG--LDDIQAQTWISTDGGALQHTG 76

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                    +   A             + +     Y  + +   +               
Sbjct: 77  RATDLALSGDAWFAIKTPGGVLLSRDGRFQVDKSGYLVSRAGYPVLADDGPLQVADGVLK 136

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
             ++ EV        +   + + N ++ L+    +  A    T +
Sbjct: 137 IDASGEVSVDDRPVGRLSIVRVDNPQQLLAVGDGLYAASTGITPA 181


>gi|283780136|ref|YP_003370891.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068]
 gi|283438589|gb|ADB17031.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068]
          Length = 250

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 37/182 (20%), Gaps = 24/182 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-----NVTVVTQRS 57
           +      +       +Q+   I  N+ N D   + +   +                  R 
Sbjct: 1   MYYGLYISAAGAYAQNQKVEMITNNLANVDTSGFKKELGIFEARQSEAIERGYEQPGTRG 60

Query: 58  ENK------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
            +             +     L A SS               +     +    +      
Sbjct: 61  VSDIGGGVEFKETVTDFSLGTLRATSSRTDFA------LPATDQFFEIERDGEALLTRSG 114

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQN-FNTSAREVQKIRADADKEIELEISNLR 164
               S++   +    D +               +      +     D       ++SN R
Sbjct: 115 NFHFSVDGVLRTQDGDAVLAAGGTPLTLDPSLPWRVLPGGLISQGGDTVPLSIKQVSNFR 174

Query: 165 RF 166
             
Sbjct: 175 SL 176



 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 45/178 (25%), Gaps = 4/178 (2%)

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
                  +            A    D   ++ +     +  +  +  +   +        
Sbjct: 72  ETVTDFSLGTLRATSSRTDFALPATDQFFEIERDGEALLTRSGNFHFSVDGVLRTQDGDA 131

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSH 419
                   L   P L          +   D V      V+       S+  +  N   ++
Sbjct: 132 VLAAGGTPLTLDPSLPWRVLPGGLISQGGDTVPLSIKQVSNF----RSLEKVGLNAFRAN 187

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                       +         VN  +E+  +I   ++Y  + K+I   D M  +L+ 
Sbjct: 188 GELTDVPAELRDVRSGSLELSTVNPMQEMVEMIASSRAYENNIKMIQHHDGMTGSLVS 245


>gi|260220025|emb|CBA27150.1| hypothetical protein Csp_A00840 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 99

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
          + ++ + A +  N A     +   N+ N   + + R++T+ T         + R
Sbjct: 1  MNSISSIALSGLNAAQTSLNASAHNVANLATEGFKRQETVQTAQSGGGVTTSVR 54


>gi|73532548|dbj|BAE19832.1| flagellar hook protein [Edwardsiella tarda]
          Length = 76

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV---TQRSENKNMFDKVLHAH 70
           N AS Q   I  NI N+    +               V    T  S N++  D      
Sbjct: 1  MNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQDFKDGTTTTT 60

Query: 71 SSAIGQQRLLQSFEAL 86
          +  +      Q F  +
Sbjct: 61 NRGLDVAISGQGFFRM 76


>gi|51246506|ref|YP_066390.1| flagellar basal body rod protein (FlgC) [Desulfotalea
          psychrophila LSv54]
 gi|50877543|emb|CAG37383.1| probable flagellar basal body rod protein (FlgC) [Desulfotalea
          psychrophila LSv54]
          Length = 143

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP 47
          M +L  F  + +     S +  +I  NI NA+  +      Y ++       P
Sbjct: 1  MDILNSFKISSSALKAQSIRLDTISSNIANAETTSTPEGGPYKKKSVYFQAKP 53


>gi|153953797|ref|YP_001394562.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM
           555]
 gi|219854413|ref|YP_002471535.1| hypothetical protein CKR_1070 [Clostridium kluyveri NBRC 12016]
 gi|146346678|gb|EDK33214.1| FlgG1 [Clostridium kluyveri DSM 555]
 gi|219568137|dbj|BAH06121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 255

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 54/250 (21%), Gaps = 9/250 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++  F  A +       +   I  N+ N +   +                         +
Sbjct: 1   MIRSFYTAVSGMIVQEAKQDVITNNLANVNTVGFK-----QDDLKSTPFNEVLIQNYDKV 55

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +       + IG   L    +++    +     +   +   +       +  +    + 
Sbjct: 56  VNGKNVR--NVIGSMTLGSKIDSVDTGFTQGTIESTDISTDFAIDGRGFFTVRREDGNEF 113

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
             +    +        + S   V            + +      ++     N +I     
Sbjct: 114 YTRDGHFHVNTQGILVDDSGNTVIGRDNQTGALGAINVG--NGDITSDAYGNISIDGNER 171

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
            K    DF D  D+     +   G +    N                    D+       
Sbjct: 172 YKIYTVDFNDYNDLTKVGDNLYTGENAAEINTVVRQKSLEKSNINLVNTMSDLITTMRTF 231

Query: 243 YTVTSESNPI 252
            T       I
Sbjct: 232 ETDQKVVQSI 241


>gi|89056685|ref|YP_512136.1| flagellar basal body rod protein FlgF [Jannaschia sp. CCS1]
 gi|88866234|gb|ABD57111.1| flagellar basal-body rod protein FlgF [Jannaschia sp. CCS1]
          Length = 240

 Score = 50.0 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/179 (8%), Positives = 35/179 (19%), Gaps = 3/179 (1%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
            +      ++ A +  NI N     +     +           +          + + A 
Sbjct: 12  LSGLM---REMAVVANNIANISTTGFRTEGLVFAEHIAATGNDSPSLSMGAAIGRSISAQ 68

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
             A+ Q           E        +            +            L       
Sbjct: 69  QGALEQTASEFDLAIEGEGFFLIGTPDGEVLSRAGAFIRNDAGELVTPDGYYLLDAGGAP 128

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                Q  + +      I AD      + +      L        A   ++  +   + 
Sbjct: 129 IFVPPQAGSVAVSSDGTISADGQPLTVVGLYLPNDPLELSRRSGTAFTVESGVQPADNA 187


>gi|227820852|ref|YP_002824822.1| flagellar basal body rod protein FlgF [Sinorhizobium fredii NGR234]
 gi|227339851|gb|ACP24069.1| Flagellar basal-body rod protein FlgF [Sinorhizobium fredii NGR234]
          Length = 241

 Score = 50.0 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 32/130 (24%), Gaps = 2/130 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  ++  NI NA+   +   +        +         ++  
Sbjct: 1   MQTGLYVALSSQMALEKRLNTLADNIANANTVGFRSTEVKFDQVLGDTKPSKVSYVSEG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ L+  + A+ +      F          D           +   +       L    
Sbjct: 60  -EEYLNTGNGALARTGSALDFAIKGNAWFNIDTPGGPALTRDGRFTLTETGELVTLKGYP 118

Query: 123 LGKTVIDNAE 132
           +        +
Sbjct: 119 VLDAGGAPIQ 128


>gi|301168504|emb|CBW28094.1| putative flagellar basal-body rod protein [Bacteriovorax marinus
          SJ]
          Length = 289

 Score = 50.0 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 4/33 (12%), Positives = 13/33 (39%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMT 43
           +      ++  +I  N+ NA+   + +   + 
Sbjct: 20 LSGAIAQQRKVETIANNVANANTPGFKKDQIVF 52



 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             + + +     VN  +E+S LIK  +++    ++I   D +
Sbjct: 237 TAVYQGFIEQSNVNAIQEMSELIKANRNFESIQRVIKTYDTI 278


>gi|85712255|ref|ZP_01043306.1| Flagella basal body rod protein [Idiomarina baltica OS145]
 gi|85693882|gb|EAQ31829.1| Flagella basal body rod protein [Idiomarina baltica OS145]
          Length = 247

 Score = 50.0 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 43/199 (21%), Gaps = 17/199 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +  N   +  +    N+ N +   +       R                  S  +
Sbjct: 5   LWIAMSGANENMKAVSVRANNLANTNTTGFKADLEQARSMQAFGEGLPTRVFSMTESPGQ 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N  +  +      +      Q + A+++         N        L        +  S 
Sbjct: 65  NFAEGPIRTTGRNLDVAINGQGWIAVQDA------NGNERYTRNGSLEIDAGGMLRTSSG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           D +           V               +     +    +    +  + +VN  +   
Sbjct: 119 DPVMGDA-----GPVLIPMPIDSLTIGRNGNISIRPQGAPEDANEIVDRIKLVNPPLNNV 173

Query: 181 TASKHDAHDFLDQRDVLLQ 199
             +        D +  L  
Sbjct: 174 EKTTDGYFALKDGQQALAD 192



 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNH---ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +EK       L    Q + +    +         VN   E++ +I +++ Y ++ K++
Sbjct: 171 NNVEKTTDGYFALKDGQQALADANVKLEVGALEGSNVNAIGEMTSMIALQRQYEMNVKMM 230

Query: 466 MFTDK 470
              D+
Sbjct: 231 KTADE 235


>gi|154175436|ref|YP_001408075.1| flagella basal body rod protein [Campylobacter curvus 525.92]
 gi|112802880|gb|EAU00224.1| flagella basal body rod protein [Campylobacter curvus 525.92]
          Length = 273

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/175 (8%), Positives = 36/175 (20%), Gaps = 26/175 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   + R D +                    
Sbjct: 1   MQNGYYQATAGMVTQFSRLNVISNNLANVNTIGFKRNDVVIGDFERIFKETQDELPLKNH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HY 96
                   +     V     E  +         S+ +      +    L +  +      
Sbjct: 61  TKDAAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDMFFLVDTPNGVRLTK 120

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
           N S          + E Y    +            +  +    +  +       +
Sbjct: 121 NGSFNLDEDGFIVTKEGYRVLPNNYQTLAPEQRGIQVPLDRSLSVDKNGNIYTMN 175


>gi|312135856|ref|YP_004003194.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor
          owensensis OL]
 gi|311775907|gb|ADQ05394.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor
          owensensis OL]
          Length = 145

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          +    N + +       +   I +NI NA+         Y R+  +   
Sbjct: 1  MFDAINISSSALTAQRVRMDVIAQNIANANTTRTENGQPYRRKIVVFEE 49


>gi|255264378|ref|ZP_05343720.1| flagellar basal-body rod protein FlgC [Thalassiobium sp. R2A62]
 gi|255106713|gb|EET49387.1| flagellar basal-body rod protein FlgC [Thalassiobium sp. R2A62]
          Length = 130

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          MS  +     + +     + +      NI NAD   Y R+ T      E        +  
Sbjct: 1  MSDFSNSLAISASGMAAQTDRLRFTSENIANADTPGYRRKTTSFEAIVEQGQSTGAVTTG 60

Query: 60 KNMFDK 65
            + DK
Sbjct: 61 PMVLDK 66


>gi|218135323|ref|ZP_03464127.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990708|gb|EEC56719.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC
           43243]
          Length = 256

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 51/235 (21%), Gaps = 28/235 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQRSE 58
               A     N   +   +  N+ NA    Y +    +           ++ +V T    
Sbjct: 4   GLYTAYTGLVNQQNRLDVVSNNLANAATTAYKKEGLTSQSFDEVMAYKVKDASVGTVNQY 63

Query: 59  -------------NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                         ++                     F ++    +      ++      
Sbjct: 64  IGDLNLGVKIGESYRDYSQGSFRETGENFDLALSGDGFFSI--SFTNKAGETSTMYTRDG 121

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
               + + Y      D +        E       T A ++   R        ++I  L  
Sbjct: 122 NFSMTKDGYLVTKDGDFVL------GEGGPIQLPTDAAKIAIDRDGTITADGVQIDKLAI 175

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
              E     +          D     D    + Q   E   ++ +      + + 
Sbjct: 176 TDFEDYNYLEQYGENLYRALDTATTKDAAGQVYQGYLEQSNVNVVSEMVEMITIS 230



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 52/177 (29%), Gaps = 4/177 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           IG            E      +A       +      +           N S  +DG  V
Sbjct: 73  IGESYRDYSQGSFRETGENFDLALSGDGFFSISFTNKAGETSTMYTRDGNFSMTKDGYLV 132

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +K   + +          +    + +++            + + ++      +LE+   +
Sbjct: 133 TKDGDFVLGEGGPIQLPTDAAKIAIDRDGTITADGVQIDKLAITDF--EDYNYLEQYGEN 190

Query: 418 SHDLHMKSQV--VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            +     +        + + Y     VN+  E+  +I + +++  + K +   D  L
Sbjct: 191 LYRALDTATTKDAAGQVYQGYLEQSNVNVVSEMVEMITISRAFEANQKAMNAADDTL 247


>gi|120613370|ref|YP_973048.1| flagellar basal body rod protein [Acidovorax citrulli AAC00-1]
 gi|120591834|gb|ABM35274.1| flagellar basal body rod protein [Acidovorax citrulli AAC00-1]
          Length = 100

 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENK 60
              A  Q  +   N+ N + + + R+    +  P    V     R+  +
Sbjct: 11 GLRAAQLQLDTSAHNVANMNTEGFRRQTVEQSAVPDQGGVEARVGRAAVE 60


>gi|168186143|ref|ZP_02620778.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str.
           Eklund]
 gi|169295828|gb|EDS77961.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str.
           Eklund]
          Length = 257

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 4/178 (2%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                  +      +      IA                       +  + S        
Sbjct: 70  TTELERDNAQGNLLQTNKNTDIAIDGHGFFKVQDGKGRTFYTRGGSFNIDNSGTVVDKDG 129

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +K  + N +              SF  N       G NTN  +  Y       ++    +
Sbjct: 130 NKLVILNERGENINNPGAGFRTTSFKINEEGYVSGGPNTNARIPIYTSIGDNSMKSIGDN 189

Query: 418 SHDLHMKSQVVFN----HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +     + +V       + + ++    V+L +E++ LI  ++++ +++  +   D+M
Sbjct: 190 LYVPENANTIVVQNEDVSLLQGFTEQSNVDLGKEMADLIITQRAFQLNSSALKTADEM 247



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 31/141 (21%), Gaps = 29/141 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     +++  +   ++  +I  N+ NA    Y + D                      
Sbjct: 1   MLRSIWNSRSGMSAEMEKLNAISNNMANATTVGYKKVDVQFNDLMQENLDRYGYPVSKGN 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
              +   V       +N       L   +           F  +++          +   
Sbjct: 61  PQFTGTGVRTTELERDN---AQGNLLQTNKNTDIAIDGHGFFKVQD------GKGRTFYT 111

Query: 103 YISKLRDSLESYSKNLSEDIL 123
                         +   + L
Sbjct: 112 RGGSFNIDNSGTVVDKDGNKL 132


>gi|150019058|ref|YP_001311312.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905523|gb|ABR36356.1| protein of unknown function DUF1078 domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 255

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 34/148 (22%), Gaps = 28/148 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +  +F  A++  N   ++   +  ++ N     Y   D                      
Sbjct: 1   MFNIFATAKSGMNAYQEKLDYLSNDLVNISTTGYKSTDVNFKDLLTESLDRRGTPLVEKK 60

Query: 44  TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
            I+   V +    + NK      L             + + AL           +     
Sbjct: 61  AITGTGVKLGVNYANNKQ---GNLLTTGGKTDLAIDGKGYFAL------SKEDGSIVYTR 111

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNA 131
               +        + +   +     + A
Sbjct: 112 DGNFKIDSNGALVDSNGTKVYVQYENGA 139



 Score = 44.6 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 67/230 (29%), Gaps = 4/230 (1%)

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           ++             K  +   L  R + +   +       ++ +   + K      +  
Sbjct: 27  VNISTTGYKSTDVNFKDLLTESLDRRGTPLVEKKAITGTGVKLGVNYANNKQGNLLTTGG 86

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
              L I        +K    I  T   N +  SN + +   G+       N  +      
Sbjct: 87  KTDLAIDGKGYFALSKEDGSIVYTRDGNFKIDSNGALVDSNGTKVYVQYENGASEGNPAL 146

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDSHDLHMKSQVVFNH- 431
                    +     +    +    T+  +       ++    S           + ++ 
Sbjct: 147 DREKMSIDKDGGISMEVDGQVAKIGTIPIFTAIGDKSFIPIGNSYFVPSSDAQVTLSSNY 206

Query: 432 -ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            I +       V+  E  S ++  ++++ +S+K +   D +  +++  ++
Sbjct: 207 NIEQGMLEGSNVDAGETFSDIVLTQRAFQLSSKAVTTADDLW-SMINNMR 255


>gi|188589304|ref|YP_001920228.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499585|gb|ACD52721.1| flagellar hook-basal body complex protein FlhP [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 256

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 10/242 (4%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N    TS +     D         S   KG         +           +  +  + 
Sbjct: 23  SNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKDAINGTGVKLGMDYRKDTQGNLL 82

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +   K  IA + +        DG           I     +     +      +GG    
Sbjct: 83  TTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSNGTLVDARGNKIYIQYEGGMSEG 142

Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
               + ++++   +  I+   D         PV     +   +    N   ++  + +  
Sbjct: 143 NPKLSSEDISIDGEGGISTKVDGQYVKVGQIPVFTAVGDKAFIAIGNNY--FVASDDAQI 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +  +      I +       V+  E  + +I  ++++ +S+K I   D++   ++ G
Sbjct: 201 ALSNDYN------IEQGMLEGSNVDTAEIFTDIISTQRAFQLSSKGITTADEVWG-MING 253

Query: 479 VK 480
           ++
Sbjct: 254 MR 255



 Score = 43.9 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 10/129 (7%), Positives = 28/129 (21%), Gaps = 10/129 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVV 53
           +  +F  AQ+  N   ++   +  ++ N     Y   D   +              V   
Sbjct: 1   MFNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKD 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLE 112
                   +           +    +        +   A    + +        L+    
Sbjct: 61  AINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSN 120

Query: 113 SYSKNLSED 121
               +   +
Sbjct: 121 GTLVDARGN 129


>gi|189426355|ref|YP_001953532.1| flagellar basal-body rod protein FlgC [Geobacter lovleyi SZ]
 gi|189422614|gb|ACD97012.1| flagellar basal-body rod protein FlgC [Geobacter lovleyi SZ]
          Length = 145

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          M L    N + +       +   I  N+ N +     +   Y R+D +   +
Sbjct: 1  MDLFTAMNTSSSALTAERTRMNLISSNLANVNTTRTPEGGPYKRKDAVFAAT 52


>gi|118474843|ref|YP_891880.1| flagellar basal body rod protein FlgC [Campylobacter fetus subsp.
          fetus 82-40]
 gi|118414069|gb|ABK82489.1| flagellar basal-body rod protein FlgC [Campylobacter fetus subsp.
          fetus 82-40]
          Length = 164

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKA 51


>gi|117619148|ref|YP_857342.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560555|gb|ABK37503.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 248

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 12/134 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +    +    A    N+ NA+   +       R                  
Sbjct: 1   MDHLLYIAMSGAKESMNSLAVRSNNLANANTTGFKSDFEQARSMQAFGEGLPTRVFAMAE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +N+   +L      +      Q + A+++               +  L+ S     +
Sbjct: 61  RPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQ 114

Query: 117 NLSEDILGKTVIDN 130
             +   +       
Sbjct: 115 TSTGLNVVDDGGQP 128



 Score = 43.1 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +  +      +         VN+ +E++ LI++++ +    K++   ++
Sbjct: 188 QNEAASATVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236


>gi|149173758|ref|ZP_01852387.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797]
 gi|148847288|gb|EDL61622.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797]
          Length = 274

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 17/181 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           ++     +       S +   +  N+ NA+  ++ R   +  ++P               
Sbjct: 18  MIYGMYLSAQGAEANSVRLDVLSNNMANANTTSFKRDVPIFRVNPPHDQHEGALNPLPGD 77

Query: 48  --ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
              +   ++  S   +     L   +S        Q F  +     +    N S +    
Sbjct: 78  LENHSGGISLESITTDFEPGSLITTNSEFDLALKGQGFFQVGNAQESFLTRNGSLSIDGD 137

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +   + +     L+ D     V   A  V    +     +        K  +L +     
Sbjct: 138 RRLVTADHGMPILTTDGREIKVPIEASHVAITPDGVVTPLDADDQPMGKLGQLAVVMPGA 197

Query: 166 F 166
            
Sbjct: 198 L 198



 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +I++ +    G N  EE+  L+   + +  +  +I   D+ L  LL+ +
Sbjct: 223 NIAQGFLEASGTNSVEEMMELVTSSRMFESNINMIKLQDESLGRLLQSM 271


>gi|301631992|ref|XP_002945075.1| PREDICTED: flagellar basal-body rod protein flgC-like [Xenopus
          (Silurana) tropicalis]
          Length = 134

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++FN + +  +  SQ+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSIFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTTPMGSDSAA 60

Query: 55 QRSENK 60
                
Sbjct: 61 GVRVRS 66



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           E Y N   VN  EE+  +I   +SY  + +++     +L   L+ 
Sbjct: 88  EGYVNHSNVNAVEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQM 132


>gi|288870659|ref|ZP_06114878.2| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM
           13479]
 gi|288866377|gb|EFC98675.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM
           13479]
          Length = 248

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/85 (8%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L+   +N       +        M      + +           +  E+  L++ +
Sbjct: 165 NPDGLVPVGKNLYSTGAASGEWIPIEDMDETQAGSRLLTGTLELSSTYVPTEMINLLQAQ 224

Query: 456 QSYNISNKLIMFTDKMLQTLLEGVK 480
           +++ ++++++   D+M + ++  ++
Sbjct: 225 RAFQLNSRIVSAADQM-EEMINNLR 248



 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/111 (7%), Positives = 22/111 (19%), Gaps = 14/111 (12%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMT-----------TISPENVTVVTQRSENKNM 62
            N    +      N+ N     Y    +               +      V         
Sbjct: 1   MNAFQSELDVTANNMANVSTPGYKVLRSSFDDLLYTQMDTKNANQMVGHGVKTNGAETVF 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              +       +    L +++ A++     ++             + S   
Sbjct: 61  EQGIFEKTERELDFAILGKAYFAVES---ENEDAEEPYYTRDGSFQISATD 108


>gi|158320510|ref|YP_001513017.1| flagellar basal-body rod protein FlgC [Alkaliphilus oremlandii
          OhILAs]
 gi|158140709|gb|ABW19021.1| flagellar basal-body rod protein FlgC [Alkaliphilus oremlandii
          OhILAs]
          Length = 147

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          MS+    N + +       +     +NI NA+         Y R+  +   
Sbjct: 1  MSIFNSLNISASGLTAERLRMDIATKNIANANTTRTSNGTPYRRQVVVFKT 51


>gi|89902475|ref|YP_524946.1| flagellar basal-body rod protein FlgC [Rhodoferax ferrireducens
          T118]
 gi|89347212|gb|ABD71415.1| flagellar basal-body rod protein FlgC [Rhodoferax ferrireducens
          T118]
          Length = 134

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTV 52
          MS+ ++FN + +  +  SQ+   +  N+ NAD         Y  R  +    P     
Sbjct: 1  MSMFSIFNVSGSAISAQSQRLNVVASNLANADAVAGPDGQGYKGRQVVFETVPMGSDA 58



 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              VN  EE+  +I   +SY  + +++     +L   L+ 
Sbjct: 93  QSNVNPIEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQM 132


>gi|330953726|gb|EGH53986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae Cit 7]
          Length = 113

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 27/110 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A+           +I  N+ N     +                          
Sbjct: 1   MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60

Query: 46  -------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88
                      V +V  +          L   ++ +      + F  + +
Sbjct: 61  ELPSGLQLGTGVRIVGTQKN---FNAGSLQTTNNPLDLAVNGRGFFQVTQ 107


>gi|217076898|ref|YP_002334614.1| flagellar basal-body rod protein FlgF [Thermosipho africanus
           TCF52B]
 gi|217036751|gb|ACJ75273.1| flagellar basal-body rod protein FlgF [Thermosipho africanus
           TCF52B]
          Length = 235

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 28/136 (20%), Gaps = 15/136 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------SPEN-- 49
           +      A         +  ++  NI NA+   Y   +                 P+   
Sbjct: 1   MYKGVYLASMGMLADITKLDTLSNNISNAETIGYKADNLAFKTYLEKRLHSFKPMPQEKK 60

Query: 50  VTVVTQRSENKNMFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           V +       + +    +        I     +  F          +             
Sbjct: 61  VEIKDIGKFEQAVILDEVKTDFSQGNIEHTENMLDFAIDGSGFFVVEKNGEKLYTRAGNF 120

Query: 108 RDSLESYSKNLSEDIL 123
           + S + +        +
Sbjct: 121 KISSDGFLVTSEGYYV 136



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 23/47 (48%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           I + Y     V++ +E+  +I+  + Y + +K +   D++L   +  
Sbjct: 184 ILQGYVEKSNVDIVKEMVKMIEANRHYEVLSKAVTVHDELLNKSINS 230


>gi|332704840|ref|ZP_08424928.1| flagellar basal body rod protein [Desulfovibrio africanus str.
          Walvis Bay]
 gi|332554989|gb|EGJ52033.1| flagellar basal body rod protein [Desulfovibrio africanus str.
          Walvis Bay]
          Length = 126

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 6/63 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--PENVTVVTQRSE 58
          M++           +  + Q      N+ N + + +             + V V   R  
Sbjct: 1  MNISPSLQ----ALDAVAIQLMVTANNVANVNTEEFRAARVDLEDGYQGQGVRVADIRRR 56

Query: 59 NKN 61
          +  
Sbjct: 57 SDQ 59



 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E +      +L  EL+ L++ E +Y  + +++    +M
Sbjct: 80  EGWVQGSNTDLAVELTRLMREEATYTANLRVMRTAHEM 117


>gi|121533766|ref|ZP_01665593.1| flagellar basal-body rod protein FlgB [Thermosinus
          carboxydivorans Nor1]
 gi|121307757|gb|EAX48672.1| flagellar basal-body rod protein FlgB [Thermosinus
          carboxydivorans Nor1]
          Length = 164

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           I  NI N +   + R +     
Sbjct: 57 VISNNIANVNTPGFKRSEVHFEE 79


>gi|23008562|ref|ZP_00049955.1| COG4786: Flagellar basal body rod protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 126

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 9/41 (21%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              A    +        I  NI N +   +       T  
Sbjct: 3  ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDL 43


>gi|149195179|ref|ZP_01872270.1| flagellar basal-body rod protein C [Caminibacter mediatlanticus
          TB-2]
 gi|149134731|gb|EDM23216.1| flagellar basal-body rod protein C [Caminibacter mediatlanticus
          TB-2]
          Length = 165

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M+ L  F+ +    +    +   I  NI NA+     +   Y R++ +    P
Sbjct: 1  MAFLNSFDISGYGLSAQRFRINIISENIANANTTRTPEGGPYRRKEVIFKAIP 53


>gi|258514025|ref|YP_003190247.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777730|gb|ACV61624.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 255

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/144 (7%), Positives = 22/144 (15%), Gaps = 27/144 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++          N   ++   +  N+ N +   +     +                    
Sbjct: 1   MIRGIYSGAAGMNVLQEKMNVMANNLANVNTNGFKMDQAVVKSFNEQLINLIDTGKDIRK 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                     VT    N      V              + F  +                
Sbjct: 61  LRPIGNFCHGVTVDEINTYFTQGVFQQTGHDTDLALDGEGFFRV-------SGAEGDYYT 113

Query: 103 YISKLRDSLESYSKNLSEDILGKT 126
                    E Y        L   
Sbjct: 114 RDGAFSLDNEGYLVTSRGYTLMGQ 137



 Score = 43.1 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           ++             + + +     V L  E++ +I V ++Y  S KL+   D++L   +
Sbjct: 189 ENEADAGVYDATNFTLKQGFLEKSNVELVNEMTDIIAVSRAYETSQKLMQVQDELLGKAV 248

Query: 477 E 477
            
Sbjct: 249 N 249


>gi|255025674|ref|ZP_05297660.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           J2-003]
          Length = 63

 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S           + ++ES S+  GVN+ EE++ +++ +  Y  + K +   + M++ LL 
Sbjct: 2   SSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLA 61

Query: 478 GV 479
            +
Sbjct: 62  ML 63


>gi|306518947|ref|ZP_07405294.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-32g58]
          Length = 182

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/171 (6%), Positives = 42/171 (24%), Gaps = 12/171 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +F  ++   +    +   I  NI N+D+  Y + +   +                 +
Sbjct: 1   MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLV------------DEV 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++  +  +             A   +              ++   +      +      
Sbjct: 49  LNRPSYPTNGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYA 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
             +    N + + +  + +   +              I +    +S    +
Sbjct: 109 YTRNGGFNIDGLGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGEL 159


>gi|116626491|ref|YP_828647.1| flagellar basal body rod protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229653|gb|ABJ88362.1| flagellar basal body rod protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 241

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/209 (9%), Positives = 42/209 (20%), Gaps = 15/209 (7%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRD------TMTTISPENVTVV--TQRSENK 60
            A +      +    +  N+ NA    Y          T    + +              
Sbjct: 7   IAASGLRARMESLDLLANNVANASTGGYKADREFYSLYTAPEAAGDGSLSTMPVIERPWV 66

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +    +LH   +A+      + F          +  +          R + +        
Sbjct: 67  DHSQGILHTTGNALDVAISGKGF-------FTVNGPSGPLYTRNGSFRLAADGKLTTADG 119

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +                  AR+    +  A       +             N      
Sbjct: 120 YPVRDPQGTALTLQTTRPVEIARDGTVTQDGAIVGKLEIVDFTSTAGLSKQGSNYFRADP 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIST 209
           +     A D   Q+  L    +     + 
Sbjct: 180 SLKSAPAADASLQQGSLEASNTGSAEAAV 208


>gi|319650828|ref|ZP_08004965.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2]
 gi|317397426|gb|EFV78127.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 35/144 (24%), Gaps = 4/144 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F  A +      ++   +  N+ NA+   +    T     PE + +     +    
Sbjct: 1   MFRGFYTAASGMLAQQRRTEVLTNNMANANTPGFKADQTSLRAFPE-MLLQRIGQKTVPT 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +    +  +G        +         D         ++ L     +   N    +
Sbjct: 60  EKGLNLPFNQEVGSLNSGVYMQETLPSFMQGDMKETGLNTDLALLDL---NLPVNPDTGL 116

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQ 146
            G      A    +   T      
Sbjct: 117 SGSVFYTAAGIDGEQRYTRNGNFT 140



 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/212 (8%), Positives = 48/212 (22%), Gaps = 8/212 (3%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L    +  V    + +     +      +      N++            D        
Sbjct: 62  GLNLPFNQEVGSLNSGVYMQETLPSFMQGDMKETGLNTDLALLDLNLPVNPDTGLSGSVF 121

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            +       Q  +        G         +  L    + I    D F  +        
Sbjct: 122 YTAAGIDGEQRYTRNGNFTLDGEGYLTTASGLYILDDAGERIQLSSDRFKVSEDGVITGE 181

Query: 394 INTNVTLLEYARN--------SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
                 L                G          +    +Q V   + + Y     V+  
Sbjct: 182 AGETARLGIMYAQNPESLRKEGDGLFAVTEESVLENAYNAQNVQFKLQQGYLERSNVDAS 241

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             ++ ++   +S+  + K++   D+ ++    
Sbjct: 242 RTMTDMMTAYRSFEANQKVLQAYDRSMEKAAN 273


>gi|147678427|ref|YP_001212642.1| flagellar basal body protein [Pelotomaculum thermopropionicum SI]
 gi|146274524|dbj|BAF60273.1| flagellar basal body protein [Pelotomaculum thermopropionicum SI]
          Length = 133

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            + A+ +   I  NI NA+   + +        
Sbjct: 13 GLDAAALRHRVIANNIANANTPGFKKSAVEFESL 46


>gi|225871944|ref|YP_002753398.1| putative flagellar basal-body rod protein FlgG [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793888|gb|ACO33978.1| putative flagellar basal-body rod protein FlgG [Acidobacterium
           capsulatum ATCC 51196]
          Length = 245

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 26/129 (20%), Gaps = 5/129 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----VTVVTQRS 57
           + + +  A       SQ   S+  N+ NA    +  +                 +     
Sbjct: 1   MESGYYAALTGLLARSQALDSVASNLANAGTAGFRAQQDYFRDVLAGPRANDSQLDQTVD 60

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               +   +L      I                      N        +L  S +     
Sbjct: 61  NYGVLGGTLLDLAQGPIQATGNPLDLAIQGGGFFEVQTPNGVRYTRDGRLVRSTKGVLIT 120

Query: 118 LSEDILGKT 126
              D +   
Sbjct: 121 GDGDPVLNA 129


>gi|134300249|ref|YP_001113745.1| flagellar basal-body rod protein FlgC [Desulfotomaculum reducens
          MI-1]
 gi|134052949|gb|ABO50920.1| flagellar basal-body rod protein FlgC [Desulfotomaculum reducens
          MI-1]
          Length = 145

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN---------YVRRDTMTTI 45
          M L   F  + +   +   +   I  NI N +  +         Y RR  +   
Sbjct: 1  MGLFDSFGISASGMTSERLRLDLISNNIANMNTPSRPNDPNSPVYRRRVPIFAE 54


>gi|224373713|ref|YP_002608085.1| flagellar basal body rod protein FlgC [Nautilia profundicola AmH]
 gi|223589296|gb|ACM93032.1| flagellar basal-body rod protein FlgC [Nautilia profundicola AmH]
          Length = 165

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M     F+ +    +    +   I  NI NA+     +   Y R++ +    P
Sbjct: 1  MGFFNSFDISGYGLSAQRFRINIISENIANANTTRTDEGGPYRRKEVIFKAVP 53


>gi|222084863|ref|YP_002543392.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
 gi|221722311|gb|ACM25467.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
          Length = 138

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 10/63 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI---SPENVTV 52
          L A    A +     S +   +  NI NA    D      Y R+             VT 
Sbjct: 4  LSAALKIAGSGLEAQSTRLRVVSENIANARSTGDTPGADPYRRKTVTFGAELDRANGVTT 63

Query: 53 VTQ 55
          V  
Sbjct: 64 VGV 66


>gi|110677662|ref|YP_680669.1| flagellar basal body rod protein FlgF [Roseobacter denitrificans
           OCh 114]
 gi|109453778|gb|ABG29983.1| flagellar basal-body rod protein FlgF, putative [Roseobacter
           denitrificans OCh 114]
          Length = 237

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/117 (8%), Positives = 29/117 (24%), Gaps = 4/117 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   +  NI NA    + +   + +   ++V   +  S  +    +     
Sbjct: 12  QSGLM---KEMRVVANNIANAATSGFRQEGVIFSEYVKSVDGASSLSMGQA-DARQTSFA 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
             A+ Q      F    +     +               + +          +    
Sbjct: 68  QGALTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDGYRVLDAG 124


>gi|46581297|ref|YP_012105.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46450718|gb|AAS97365.1| flagellar basal-body rod protein, putative [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|311234961|gb|ADP87815.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
          vulgaris RCH1]
          Length = 125

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 2/52 (3%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQR 56
           +      +           NI N +   +    T     P    V +   R
Sbjct: 3  IDTGWAALDAFGIGLGVTANNIANVNTDGFRASQTRYETGPGGEGVRLGEIR 54



 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 18/42 (42%)

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                +   E+  +++ ++++  +   I   D M   +L+ +
Sbjct: 83  EGSNTDTAREMVSMMETQRAHEANVASIRAHDDMTGVVLDIM 124


>gi|229825259|ref|ZP_04451328.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC
           49176]
 gi|229790631|gb|EEP26745.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC
           49176]
          Length = 258

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/182 (9%), Positives = 47/182 (25%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           +G            +      +A   +          +           N    +DG   
Sbjct: 73  VGEVFTDYSQGALRDTAGKYDLALSGEGFFAVRYVDKNGNESTKYTRDGNFRLTKDGHVT 132

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                            ++    S   +        +   + ++++          +   
Sbjct: 133 DVYGNQLRTESGVLRVPLDSEDISVGIDGTVSVNNQVIDKIKIVDFENYDYIEKFGDNLY 192

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                   +     + + Y     VN   E+  LI + ++Y    K+I  +D ++++ + 
Sbjct: 193 QTVEGATEKESEAQVLQGYIEQSNVNSVREMVNLITITRAYEAGQKMIQSSDSIMESAVN 252

Query: 478 GV 479
            V
Sbjct: 253 SV 254



 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/146 (8%), Positives = 34/146 (23%), Gaps = 28/146 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L     A     N  ++   +  N+ NA    +    + +                   
Sbjct: 1   MLRSLYTAYTGMVNEQRRMDIMTNNLANATTAGFKMESSSSQSFDRVLGIKIRDVSEAFN 60

Query: 46  ------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                     V V        +     L   +         + F A+       +   ++
Sbjct: 61  DHSIGQMSLGVKVGEV---FTDYSQGALRDTAGKYDLALSGEGFFAV--RYVDKNGNEST 115

Query: 100 PTHYISKLRDSLESYSKNLSEDILGK 125
                   R + + +  ++  + L  
Sbjct: 116 KYTRDGNFRLTKDGHVTDVYGNQLRT 141


>gi|260437440|ref|ZP_05791256.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM
           2876]
 gi|292810072|gb|EFF69277.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM
           2876]
          Length = 256

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 55/181 (30%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           IG            E      +A              + T  V      + +   +G  +
Sbjct: 73  IGETYTDYSTGNLRETGNTYDLALSGNGFFAISYADKNGTESVRYTRDGSFTVNSEGILM 132

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
           +K   + + +  G   +      S N++ I +        + + ++              
Sbjct: 133 TKDGDFVLGDDGGLITIPVGTEVSINESGIIEADGEEVARLQITDFEDYDYLKKFGENMY 192

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +      ++     + + Y  +  VN+  E+  +I + + Y  S K+I   D  L+  + 
Sbjct: 193 TAIDGATTKAAQGKVYQGYLESSNVNVVSEMVNMITIARDYESSQKVIQSIDSTLERAVN 252

Query: 478 G 478
            
Sbjct: 253 L 253



 Score = 43.1 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/162 (6%), Positives = 29/162 (17%), Gaps = 22/162 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++           N  ++   +  N+ N+    Y +    +                   
Sbjct: 1   MVRALYTGATGMVNEMKRLDVVSNNLANSATTAYKKEGATSQAFKDMLAIKINDETDSYI 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                     V       +     L    +          F A+    +  +   +    
Sbjct: 61  DRPIGYMSLGVKIGETYTDYSTGNLRETGNTYDLALSGNGFFAI--SYADKNGTESVRYT 118

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
                  + E        D +           V    +    
Sbjct: 119 RDGSFTVNSEGILMTKDGDFVLGDDGGLITIPVGTEVSINES 160


>gi|90418400|ref|ZP_01226312.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338072|gb|EAS51723.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 241

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 43/181 (23%), Gaps = 2/181 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +     S++  +I  N+ N+    +   +                  ++  
Sbjct: 1   METALPVALSAQLAMSKRLDTIAHNVANSRTTGFRAEEIKFEELISLSAPEPVSFASEG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                   S  + Q           +   A    N        ++R + +   + +S   
Sbjct: 60  -TTYFSTRSGEMTQTGNPLDMAVDGDAFFAFQGPNGPVYTRDGRMRINAQGMVETISGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L        +        +      I  +  +   + +  L          N  +    A
Sbjct: 119 LVDVGGAPLQVDPNAGPVTITRDGMITQNGAQAGAVGLFQLPAGAKLTRFENSGLIPDRA 178

Query: 183 S 183
           +
Sbjct: 179 A 179


>gi|306820921|ref|ZP_07454541.1| flagellar basal body and hook protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551035|gb|EFM39006.1| flagellar basal body and hook protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 372

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 93/326 (28%), Gaps = 25/326 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY----------------VRRDTM--TT 44
           +      A +       Q   I  NI N D   +                 R +      
Sbjct: 1   MFRGIYTASSAMQTKQNQIEIISNNISNVDTTAFKKDVGVTEAFSEKLLMKRENVEGYLR 60

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +  NV V  +  +N  +   +  +      + +  + +     ++  D+ Y  +  +  
Sbjct: 61  ANSNNVKVSNKTLKNGLVKTDIEISRGYLTLEDKNGKGYYKSASVVRDDEGYLRTVYNEY 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +   + +  +   L ++   +  +   E  V N        +++      E    I  + 
Sbjct: 121 NS--NDITKFGAYLLDENSNRINVPEGEITVDNNGNIVSGGRQVAKLIVPEARKSIGTIN 178

Query: 165 R-FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
              L +  ++N     +  +++  H  L+       ++     I          V    +
Sbjct: 179 SGNLIDRVMINFNQGAQERTENPMHISLEGNGFFKVRLDSTDAIKYSRSG----VFTLDN 234

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
              L + +   +  E  +   V + S  +         +  S   + +I  L  +     
Sbjct: 235 SGVLKDFLGNIVLSEDGSEIKVPTNSRSLEFKSDGSVVSLNSDGQREQIAKLALVDIYNK 294

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAG 309
              Q       ++   + + + P  G
Sbjct: 295 EDMQKYGHSYMQMTNNAQAIEHPFGG 320



 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 69/269 (25%), Gaps = 7/269 (2%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                     VY    +         +  E  N   V      +  +G +VS  +  A  
Sbjct: 106 VRDDEGYLRTVYNEYNSNDITKFGAYLLDENSNRINVPEGEITVDNNGNIVSGGRQVAKL 165

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                       +   +    +    +           I+        + +        +
Sbjct: 166 IVPEARKSIGTINSGNLIDRVMINFNQGAQERTENPMHISLEGNGFFKVRLDSTDAIKYS 225

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
           +      +   V   +  N     DG  +                +++   D   +    
Sbjct: 226 RSGVFTLDNSGVLKDFLGNIVLSEDGSEIKVPTNSRSLEFKSDGSVVSLNSDGQREQIAK 285

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +  I     + +Y      +++   +     H         + + Y     V+  +E+
Sbjct: 286 LALVDIYNKEDMQKYGH---SYMQMTNNAQAIEHPFG----GKVLQGYLEKSNVSAIDEM 338

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             +I++ + +    K+I   D+++Q    
Sbjct: 339 VDMIQMYRGFESDQKVINAYDQIMQKAAN 367


>gi|205373369|ref|ZP_03226173.1| flagellar basal body rod protein FlgC [Bacillus coahuilensis
          m4-4]
          Length = 149

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 10/58 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISPE 48
          MS+    N + +       +   I  N+ NAD             Y R+  +   +  
Sbjct: 1  MSIFQSINISTSALTAQRLRMDVISSNVANADTTRGEYVNGEWQPYTRKSVVLQENQG 58


>gi|150395479|ref|YP_001325946.1| flagellar basal body rod protein FlgF [Sinorhizobium medicae
           WSM419]
 gi|150026994|gb|ABR59111.1| flagellar basal body rod protein [Sinorhizobium medicae WSM419]
          Length = 241

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  ++  NI N++   +   +        +         ++  
Sbjct: 1   MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ L   + A+ +      F    +   + D           +   +       +    
Sbjct: 60  -EEFLSTKTGALARTGSALDFAVKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                       +I   AD  I      +          +        
Sbjct: 119 VLDAG--------GAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEADFSKGFMRYDN 170

Query: 183 SKHDAHD 189
           S      
Sbjct: 171 SAVMPAA 177


>gi|39934722|ref|NP_946998.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris
           CGA009]
 gi|39648572|emb|CAE27093.1| possible flagellar basal-body rod protein FlgG [Rhodopseudomonas
           palustris CGA009]
          Length = 273

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 71/243 (29%), Gaps = 9/243 (3%)

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
                  K  +   +    P  +   V+  +  +   +G I          +        
Sbjct: 30  NAQTTAFKATNTAFSDLIYPPQVSDTVLWRSVLTNGQQGSISYDPVSTHMAIGGEGYFTV 89

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           E    +  S       +  +    G F       ++      +   I        +   L
Sbjct: 90  EAPSGVSASGQPTFSTSETTYTRRGDFELKNGYLVNGAGYYLMGAQIDPVTGAVGSTGPL 149

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +   S +   L  +++L+           S  +      +       ++  +A       
Sbjct: 150 QFDTSTALPDLGVLQSLSVSSSGKLQGTYSKGQTVDVASL-------SIASFAGQGFMKQ 202

Query: 412 EKNR--SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
                 S +        V    +  S      V++ ++++ +++ +Q+Y+   ++++ ++
Sbjct: 203 GSGGTFSPTPQSGPALFVNAGTVVGSALEASNVDIADQMTTMVQAQQAYSACTRVVIASN 262

Query: 470 KML 472
           +M+
Sbjct: 263 EMM 265



 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 4/132 (3%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M  L     A       S  F +I  N+ NA    +   +T  +       V        
Sbjct: 1   MGSLGALWTATTGLQAQSAAFENISGNVANAQTTAFKATNTAFSDLIYPPQVSDTVLWRS 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            + +        +I    +        E     +  +            S  +Y++    
Sbjct: 61  VLTNGQ----QGSISYDPVSTHMAIGGEGYFTVEAPSGVSASGQPTFSTSETTYTRRGDF 116

Query: 121 DILGKTVIDNAE 132
           ++    +++ A 
Sbjct: 117 ELKNGYLVNGAG 128


>gi|291558217|emb|CBL35334.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a]
          Length = 235

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 38/159 (23%), Gaps = 7/159 (4%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS-- 71
             N  +   +I  N+ N +   Y + +       E + +V+ R +    F +     S  
Sbjct: 1   MLNHQRSLDAISNNLTNINTAGYKKDEIRMNTFQEELILVSNRRKTSGKFVQTYVDTSKS 60

Query: 72  ----SAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDILGKT 126
               S+               +       N +       +     E Y        +   
Sbjct: 61  NLEQSSFEFTESPFDIGIQGNVYFNIQGTNGNVYQTRCGQFELDGEGYLCLNDSGRVLGQ 120

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
             +           +   +     +  +++ L       
Sbjct: 121 SGEIYIGNDDFIVDNEGNILNENGEVIEKLRLSYIPENA 159


>gi|187935622|ref|YP_001885067.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723775|gb|ACD24996.1| flagellar hook-basal body complex protein FlhP [Clostridium
           botulinum B str. Eklund 17B]
          Length = 256

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 10/242 (4%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N    TS +     D         S   KG         +           +  +  + 
Sbjct: 23  SNDLVNTSTTGYKATDVQFSDLLTESLDRKGTPLVNKDAINGTGVKLGMDYRKDTQGNLL 82

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +   K  IA + +        DG           I     +     +      + G    
Sbjct: 83  TTGIKTDIAIDGKGYIASVQQDGTIAYTRDGNLKIDSNGTLVDARGNKIYIQYEDGMSEG 142

Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
               + ++++   D  I+   D+        PV     +   +    N   ++  + +  
Sbjct: 143 SPKLSSEDISIDGDGGISTKVDNQYVKVGQIPVFTAIGDKAFVAIGNNY--FVASDDAQI 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +  +      I +       V+  E  + +I  ++++ +S+K I   D++   ++ G
Sbjct: 201 ALSNDYN------IEQGMLEGSNVDTSEIFTDIISTQRAFQLSSKGITTADEVWG-MING 253

Query: 479 VK 480
           ++
Sbjct: 254 MR 255



 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 16/46 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +  +F  AQ+  N   ++   +  ++ N     Y   D   +    
Sbjct: 1  MFNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKATDVQFSDLLT 46


>gi|255591998|ref|XP_002535647.1| Flagellar basal-body rod protein flgG, putative [Ricinus
          communis]
 gi|223522413|gb|EEF26734.1| Flagellar basal-body rod protein flgG, putative [Ricinus
          communis]
          Length = 166

 Score = 49.3 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 9/35 (25%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
                   +I  N+ N +   Y R     +    
Sbjct: 1  MQAQQLNVETIASNLANVNTAGYKRSRVSFSDLVA 35


>gi|15964409|ref|NP_384762.1| flagellar basal body rod protein FlgF [Sinorhizobium meliloti 1021]
 gi|307311551|ref|ZP_07591192.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti
           BL225C]
 gi|17380373|sp|O54248|FLGF_RHIME RecName: Full=Flagellar basal-body rod protein flgF
 gi|15073586|emb|CAC45228.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021]
 gi|306899568|gb|EFN30197.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti
           BL225C]
          Length = 241

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  ++  NI N++   +   +        +         ++  
Sbjct: 1   MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ L   + A+ +      F    +   + D           +   +       +    
Sbjct: 60  -EEFLSTKTGALARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                       +I   AD  I      +          +        
Sbjct: 119 VLDAG--------GAPIQLNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDN 170

Query: 183 SKHDAHD 189
           S      
Sbjct: 171 SSVMPAA 177


>gi|330893070|gb|EGH25731.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 202

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/157 (5%), Positives = 23/157 (14%), Gaps = 33/157 (21%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------S 46
           +           +I  N+ N     +                                  
Sbjct: 21  KTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQL 80

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
              V +V  +          L   ++ +      + F  + +                  
Sbjct: 81  GTGVRIVGTQKN---FTAGSLQTTNNPLDLAVNGRGFFQVTQ------PDGTVAYSRDGT 131

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                       +   L   ++               
Sbjct: 132 FHLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGT 168


>gi|188586014|ref|YP_001917559.1| flagellar basal-body rod protein FlgB [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350701|gb|ACB84971.1| flagellar basal-body rod protein FlgB [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 134

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 11/33 (33%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            N  +++   I  NI N +   + R       
Sbjct: 13 SLNGTTKRHEVISNNIANVNTPGFKRGRVDFEE 45


>gi|254463222|ref|ZP_05076638.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium
          HTCC2083]
 gi|206679811|gb|EDZ44298.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 126

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 16/49 (32%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
               S +   +  NI NAD   Y R+     +S +   V   R     
Sbjct: 14 GLKAQSARLRHVSENIANADTPGYHRKIVSFDLSRDTGQVTIGRLSLDQ 62


>gi|197104382|ref|YP_002129759.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum
           HLK1]
 gi|196477802|gb|ACG77330.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum
           HLK1]
          Length = 245

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 34/156 (21%), Gaps = 10/156 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTV 52
           +        +      ++   I  NI N D   +     M              P+ V  
Sbjct: 1   MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKF 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           VT     ++     L      +      Q F  L+         +            +  
Sbjct: 61  VTADGVARDFGQGALRRTDGELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQN 120

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
                           +  +  V      ++  ++I
Sbjct: 121 GSPVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERI 156


>gi|254458686|ref|ZP_05072110.1| flagellar basal-body rod protein FlgC [Campylobacterales
          bacterium GD 1]
 gi|207084452|gb|EDZ61740.1| flagellar basal-body rod protein FlgC [Campylobacterales
          bacterium GD 1]
          Length = 163

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS L+ F+ +    +    +  +I +NI NA      +   Y R++ +   
Sbjct: 1  MSFLSSFDISGYGLSAQRVRVNTISQNIANAQTTRTEEGGPYRRKEVVFKA 51


>gi|251778946|ref|ZP_04821866.1| flagellar hook-basal body complex protein FlhP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083261|gb|EES49151.1| flagellar hook-basal body complex protein FlhP [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 256

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 70/242 (28%), Gaps = 10/242 (4%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N    TS +     D         S   KG         +           +  +  + 
Sbjct: 23  SNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKDAINGTGVKLGMDYRKDTQGNLL 82

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +   K  IA + +        DG           I     +     +      +GG    
Sbjct: 83  TTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSNGTLVDARGNKIYIQYEGGMSEG 142

Query: 360 KFLWNVKNLAGYPDL-INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
               + ++++   +  I+   D         PV     +   +    N   ++  + +  
Sbjct: 143 NPKLSSEDISIDGEGGISTKVDGQYVKVGQIPVFTAVGDKAFIAIGNNY--FVASDDAQI 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
              +  +      I +       V+  E  + +I  ++++ +S+K I   D++   ++  
Sbjct: 201 ALSNDYN------IEQGMLEGSNVDTSEIFTDIISTQRAFQLSSKGITTADEVWG-MINS 253

Query: 479 VK 480
           ++
Sbjct: 254 MR 255



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 28/129 (21%), Gaps = 10/129 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN---------VTVV 53
           +  +F  AQ+  +   ++   +  ++ N     Y   D   +              V   
Sbjct: 1   MFNIFANAQSGMSAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKD 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLE 112
                   +           +    +        +   A    + +        L+    
Sbjct: 61  AINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSN 120

Query: 113 SYSKNLSED 121
               +   +
Sbjct: 121 GTLVDARGN 129


>gi|255099413|ref|ZP_05328390.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-63q42]
          Length = 134

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKN-----YVRRDTMTTISP------E 48
          MS+ +    + +     S +   I  N+ N +  +      Y R+      +        
Sbjct: 1  MSVFSGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGML 60

Query: 49 NVTVVTQR 56
           V V +  
Sbjct: 61 GVKVTSVE 68



 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-- 430
           D+I+    + N     +  A     V+  E   N +G L    +   D     + V++  
Sbjct: 22  DIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTSVEDDKSPLKKVYDPS 81

Query: 431 ---HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   Y     VN+  E++ LI   ++Y+ +   +     M+   LE 
Sbjct: 82  HPDAKPNGYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKALEI 132


>gi|313673204|ref|YP_004051315.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939960|gb|ADR19152.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 206

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            I   +     V++ +E+   I   +    + K +   D+ML  ++  V
Sbjct: 157 EILSGFLEASNVDIAKEMVESITNFRYIQANVKTVKTVDEMLGNIVNIV 205



 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/154 (6%), Positives = 35/154 (22%), Gaps = 10/154 (6%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVLH 68
           A +  +  ++++     NI N  +  +  +           V + +  S           
Sbjct: 8   ALSAISAGNKKYGVTANNIANISSTAFKGKIAHLKEFSKGGVELYSVTSNEGI---GYFI 64

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES------YSKNLSEDI 122
                +        +    +            +   +     +           +     
Sbjct: 65  NTGRPLDLAINGDGYFKFTDGNKEVYSRMGILSIDKNGEMVDVSGRRVGINVGTSPDNVH 124

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           +        +  V+       +   +  D++ EI
Sbjct: 125 IDNKGNVYVDGEVKGKLQIYNQNGGVVPDSNYEI 158


>gi|134300226|ref|YP_001113722.1| hypothetical protein Dred_2387 [Desulfotomaculum reducens MI-1]
 gi|134052926|gb|ABO50897.1| protein of unknown function DUF1078 domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 257

 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +    V   +++ +     V+  +E+  +I V + Y  S KLI   D++L   +  V
Sbjct: 196 GVAEAAVSTTVTQGWLEKSNVDPVQEMINIIPVARIYESSQKLIQIQDELLDKAINQV 253



 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/145 (5%), Positives = 27/145 (18%), Gaps = 26/145 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +L       N  N    +  ++  N+ N     Y + + + +                  
Sbjct: 1   MLRGLYITMNSLNVQQAKLNNVTNNLSNLSTTGYKKNNMVDSQFAESLQLALENHGPGGK 60

Query: 46  ---SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                + +        + +     L               +  +++              
Sbjct: 61  RQPIGKGILGNMITQVHIDYGQGPLTETGKLTDMALEGNGYFVVED------ENGEQFLT 114

Query: 103 YISKLRDSLESYSKNLSEDILGKTV 127
                  + E          +    
Sbjct: 115 RDGSFHVNEEGALLTGDGFRVLGEG 139


>gi|167645397|ref|YP_001683060.1| flagellar basal body rod protein [Caulobacter sp. K31]
 gi|167347827|gb|ABZ70562.1| flagellar basal body rod protein [Caulobacter sp. K31]
          Length = 245

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/191 (8%), Positives = 40/191 (20%), Gaps = 3/191 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENK 60
           +        +      ++   +  NI NA+   +     M    P     TV        
Sbjct: 1   MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEQLMVRTEPAKPARTVGGSYPVKF 60

Query: 61  NMFDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            + D V       A+ Q           +                 +   S E      +
Sbjct: 61  VLDDGVARDFSQGALTQTGGAFDLAIEGQGFFKVSTAGGERYTRDGRFTMSPEGKLITQN 120

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +                 +      +   A++  ++ +       +     ++  + 
Sbjct: 121 GASVLDEGGGEIIVDPLKGPATIARDGTVSQGAERLGKIGVVRPTDLAAFRKDGDNLYRN 180

Query: 180 KTASKHDAHDF 190
            T         
Sbjct: 181 TTNDTPQPATN 191


>gi|110632662|ref|YP_672870.1| flagellar basal body rod protein FlgF [Mesorhizobium sp. BNC1]
 gi|110283646|gb|ABG61705.1| flagellar basal body rod protein [Chelativorans sp. BNC1]
          Length = 239

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 52/218 (23%), Gaps = 7/218 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT--VVTQRSENK 60
           +      A +      ++ A++  N+ NA    +       +     ++   V+  S   
Sbjct: 1   MQTGLYVALSSQMALERRLATLADNVANAGTVGFRAGGITFSDVMSGLSEEAVSFVSTGS 60

Query: 61  NMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           N +D     L    S         ++ A++         +   T   +    +LE ++  
Sbjct: 61  NFYDTRAGGLRETGSPFDFAVQGDAWFAVETPAGPVMTRDGRFTMRETGELVTLEGHAVL 120

Query: 118 LSEDI--LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +     +        E           ++               +              
Sbjct: 121 DAGGAPLVLDPQAGPPEAGADGILRQNGQLIGAIGLFSFTPGPNATRFGNSGFLPDTRPQ 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
            +  +           D     + ++  +I +      
Sbjct: 181 PVVDQPDVGIAQGFLEDSNVNPVNEMMRLIQVQRTFEQ 218


>gi|262652|gb|AAB24738.1| flagellar basal body proximal rod protein [Caulobacter vibrioides]
          Length = 248

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/138 (7%), Positives = 25/138 (18%), Gaps = 17/138 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTT------ISPENVTV 52
           +        +      ++   +  NI NA+   +        T              V  
Sbjct: 1   MDNALYVGLSRQMTVRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V      +N     +               F  ++                  +   + E
Sbjct: 61  VMDTGVRRNFTQGPMTKTGGDYDLAINGMGFFKVQ-------ANGGERYTRDGRFTTNPE 113

Query: 113 SYSKNLSEDILGKTVIDN 130
                 +   +       
Sbjct: 114 GILVTQAGAPVLDDGGGQ 131



 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/167 (7%), Positives = 37/167 (22%), Gaps = 9/167 (5%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +        G+ +          ++    +                   +         
Sbjct: 70  FTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGG 129

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
            +   + + L       +              +   +   T  +   N           +
Sbjct: 130 GQITIDPR-LGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLY--------RN 180

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
                   V    I +       V    E++ LI+++++Y    K++
Sbjct: 181 TTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMM 227


>gi|260429533|ref|ZP_05783510.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45]
 gi|260420156|gb|EEX13409.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45]
          Length = 237

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 6/139 (4%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTT------ISPENVTVVTQRSENKNMFDKVLHAHS 71
           S++   I  NI NA    Y ++  + +          +V +      N +     L    
Sbjct: 16  SREMQMIANNIANAATTGYRQQGVVFSEYVRQTDDSGSVAMSAAHVRNTSFEQGALTRTG 75

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
             +        F  ++         N +          + + Y+   +         D +
Sbjct: 76  GQLDLAIEGDGFFLIQTPGGERLTRNGAFAVSAQGDLVTQDGYAVLDAGGAPVFVPPDAS 135

Query: 132 EEVVQNFNTSAREVQKIRA 150
           +       T + +   I  
Sbjct: 136 DLAFAQDGTMSSKGTPIGQ 154


>gi|83858805|ref|ZP_00952327.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853628|gb|EAP91480.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii
           HTCC2633]
          Length = 244

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 38/171 (22%), Gaps = 22/171 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTV 52
           +               +Q   +  NI NA+ + +     M              P     
Sbjct: 1   MDNTMLIGLTRQLTLRRQMDVVANNIANANTQGFKAERMMLEPDTSMRARHQDGPNRARF 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V + +  ++     L   S  +             +     +               S +
Sbjct: 61  VDEWAMGRDFSQGALTHTSRPLDLAL-------QGDGFFMLETDAGERFTRDGAFTLSPQ 113

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                     +      +A       + +A ++         +   +I+ +
Sbjct: 114 GELVAGDGARVL-----DAGGAPIILDPAAGQISIGETGIVTQNGQQIAQV 159


>gi|253574271|ref|ZP_04851613.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846748|gb|EES74754.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 300

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/274 (8%), Positives = 64/274 (23%), Gaps = 4/274 (1%)

Query: 208 STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
           +      N          T+  + P  +     +  +  ++     + GV    +  +  
Sbjct: 21  TVTQNIANLNTPGYKSVNTVARSFPEMLISLMGDKQSGNNKQIGKLVTGVFAEESLPAFT 80

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
                +       +++     +  E         S K                    +  
Sbjct: 81  QGDLKETGKNTDFALISELSLENPETGGPYAFDASGKFVTEDGEVIYQPQAFFAVEDNEG 140

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
           N                    +  R   +     + +                +   N  
Sbjct: 141 NVRYTRDGSFTVNAAGELRTSTGFRVLDTGGNPIILDAGLSVDTLTSDEAGNLTAVDNTG 200

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH----ISESYSNTVGVN 443
                G      + +  +         R    +     ++V       + + Y     V+
Sbjct: 201 ALVDLGTLGITVVEQPYQLVREGNGVFRVADEEAAGVRELVPGTDGAVVRQGYLEVSNVD 260

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             + +  L+  +++Y  + K+I + D+ L   + 
Sbjct: 261 TAQSMVDLLAAQRAYESNQKIIQYYDRSLDKAVN 294



 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42
          +L     A +      ++  ++ +NI N +   Y   +T+
Sbjct: 1  MLRGLYTAASGMIAEQRRHDTVTQNIANLNTPGYKSVNTV 40


>gi|302392398|ref|YP_003828218.1| flagellar basal-body rod protein FlgC [Acetohalobium arabaticum
          DSM 5501]
 gi|302204475|gb|ADL13153.1| flagellar basal-body rod protein FlgC [Acetohalobium arabaticum
          DSM 5501]
          Length = 145

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M L +  N + +       +   I  NI N +  
Sbjct: 1  MGLFSGMNVSSSGMTAQRLRMDLISNNIANINTT 34


>gi|332702980|ref|ZP_08423068.1| flagellar basal-body rod protein FlgC [Desulfovibrio africanus
          str. Walvis Bay]
 gi|332553129|gb|EGJ50173.1| flagellar basal-body rod protein FlgC [Desulfovibrio africanus
          str. Walvis Bay]
          Length = 147

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48
          M  +   + A +       Q   I  N+ N +     +   Y R+  +   +  
Sbjct: 1  MDFMTALDVAASGLTAKRTQLNIISSNLANINTTRTAEGGPYRRKTVVFQTTGT 54


>gi|300722684|ref|YP_003711974.1| flagellar basal-body rod cell-proximal protein [Xenorhabdus
          nematophila ATCC 19061]
 gi|297629191|emb|CBJ89787.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Xenorhabdus nematophila ATCC 19061]
          Length = 134

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMT-TISPENVTVV 53
          MSLL++F+ A +  +  SQ+      N+ NA          Y  +  +    +P    + 
Sbjct: 1  MSLLSIFDIASSALSAQSQRLNVSASNMANADSVVGPDGEPYRAKQVVFRVAAPAGQEIG 60

Query: 54 TQRSE 58
            R  
Sbjct: 61 GVRVS 65


>gi|56965597|ref|YP_177331.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16]
 gi|56911843|dbj|BAD66370.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16]
          Length = 262

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/174 (6%), Positives = 42/174 (24%), Gaps = 15/174 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MS+    + A    +    +  +I  N+ NA+   + RR         +  +       +
Sbjct: 1   MSIG---HTAAATLSQLQAKIDTISNNMANAETTGFKRRSASFADVLTSEYLNQPNENRQ 57

Query: 61  N-----------MFDKVLHAHSSAIGQQRLLQSF-EALKEMMSADDHYNNSPTHYISKLR 108
                       +    +      + +      F     ++    +    +         
Sbjct: 58  TPHGLRVGTGAKLAQTQIQLEQGTLRETGRELDFALTEADLFYNIETVAGTRLTRDGTFY 117

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
            S ++    L         + +++            ++    +   ++      
Sbjct: 118 FSPQAVGNGLELVTSDGNRVLDSDGEAIVMPGDTVSLEWRDGNLFAQLRNGGEQ 171



 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 47/198 (23%), Gaps = 5/198 (2%)

Query: 274 ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQG 333
            L     + +   Q QL++      G   +      +            +          
Sbjct: 61  GLRVGTGAKLAQTQIQLEQGTLRETGRELDFALTEADLFYNIETVAGTRLTRDGTFYFSP 120

Query: 334 ISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
            +    +          L   G         V       +L     +   +      +  
Sbjct: 121 QAVGNGLELVTSDGNRVLDSDGEAIVMPGDTVSLEWRDGNLFAQLRNGGEQQVGSFALTR 180

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
           +    TL     N     E        +         H+ ++      V+L  E++ L++
Sbjct: 181 VLRPQTLESGGNNLYVLPELPGVSEEVVAAD-----EHMKQNMLEQANVDLGLEMAELME 235

Query: 454 VEQSYNISNKLIMFTDKM 471
            ++      +   F D M
Sbjct: 236 TQRLLQFQARAYSFADDM 253


>gi|149911701|ref|ZP_01900309.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36]
 gi|149805231|gb|EDM65248.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36]
          Length = 247

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/248 (8%), Positives = 58/248 (23%), Gaps = 14/248 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   + +         A    N+ N +   +       R                  
Sbjct: 1   MDNMLYISMSGAKENMNALAVRANNLANVNTHGFKADFEQARSMQAFGEGLPTRVFAITE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S  ++     L    +A+        + ++ +        NN        L  S      
Sbjct: 61  SPGQDFTGGALQQTGNALDVALQGDGWLSVLD------DKNNEGYTRSGSLHMSATGELL 114

Query: 117 NLSEDIL--GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
             S   +      I     + Q    +   ++     A      ++  L+    ++  + 
Sbjct: 115 TSSGRPVLGENGPIIIPTPIEQIQIHADGRIEIRPQGAPANALEQVDQLKLVNPDVRNLV 174

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                           +D    +   + E   +S +      + +       +      +
Sbjct: 175 KGYDGLFRQADGTPAVVDPNVQVAGGVLETSNVSAVGELTGMINLQRQFEMQIKMMKTAE 234

Query: 235 INFEKMNS 242
            N +  ++
Sbjct: 235 ENDKASDT 242


>gi|126697817|ref|YP_001086714.1| flagellar basal-body rod protein [Clostridium difficile 630]
 gi|254973910|ref|ZP_05270382.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-66c26]
 gi|255091296|ref|ZP_05320774.1| flagellar basal-body rod protein [Clostridium difficile CIP
          107932]
 gi|255305270|ref|ZP_05349442.1| flagellar basal-body rod protein [Clostridium difficile ATCC
          43255]
 gi|255312954|ref|ZP_05354537.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-76w55]
 gi|255515713|ref|ZP_05383389.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-97b34]
 gi|255648807|ref|ZP_05395709.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-37x79]
 gi|306518922|ref|ZP_07405269.1| flagellar basal body rod protein FlgC [Clostridium difficile
          QCD-32g58]
 gi|115249254|emb|CAJ67067.1| Flagellar basal-body rod protein FlgC [Clostridium difficile]
          Length = 134

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKN-----YVRRDTMTTISP------E 48
          MS+ +    + +     S +   I  N+ N +  +      Y R+      +        
Sbjct: 1  MSVFSGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGML 60

Query: 49 NVTVVTQR 56
           V V +  
Sbjct: 61 GVKVTSVE 68



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-- 430
           D+I+    + N     +  A     V+  E   N +G L    +   D     + V++  
Sbjct: 22  DIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTSVEDDKSPLKEVYDPS 81

Query: 431 ---HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   Y     VN+  E++ LI   ++Y+ +   +     M+   LE 
Sbjct: 82  HPDAKPNGYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKALEI 132


>gi|311992327|gb|ADQ26737.1| proximal rod protein [Aeromonas hydrophila]
          Length = 247

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 31/131 (23%), Gaps = 12/131 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSEN 59
           +   A +    +    A    N+ NA+   +       R                     
Sbjct: 3   LLYIAMSGAKESMNSLAVRSNNLANANTTGFKSDFEQARSMQAFGEGLPTRVFAMAERPG 62

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
           +N+   +L      +      Q + A+++               +  L+ S     +  +
Sbjct: 63  QNLQHGMLMTTGRDLDVAVDGQGWIAVQD------PKGGEAYTRMGNLQLSATGNLQTST 116

Query: 120 EDILGKTVIDN 130
              +       
Sbjct: 117 GLNVVDDGGQP 127



 Score = 43.1 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +  +      +         VN+ +E++ LI++++ +    K++   ++
Sbjct: 187 QNEAASATVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 235


>gi|315121849|ref|YP_004062338.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495251|gb|ADR51850.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 134

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 10/68 (14%)

Query: 8  NKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS---PENVTVVTQRS 57
            A +     S +   I  NI NA           Y R+             V V     
Sbjct: 9  QIANSGLTVQSSRMHVISENIANARTTGNTAGSDPYRRKTISFEEVMHEGGGVRVKKVSV 68

Query: 58 ENKNMFDK 65
          +     ++
Sbjct: 69 DKSPFVEE 76


>gi|311030132|ref|ZP_07708222.1| flagellar basal body rod protein FlgC [Bacillus sp. m3-13]
          Length = 150

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+    N + +       +   I  N+ N D+ 
Sbjct: 1  MSMFKSMNISSSALTAQRLRMDVISSNMANVDST 34


>gi|218509843|ref|ZP_03507721.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5]
          Length = 65

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          MS+      A +  N  + + +++  NI N +   Y    T  +      +     S   
Sbjct: 1  MSIFGSMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61 N 61
           
Sbjct: 61 Q 61


>gi|295111496|emb|CBL28246.1| flagellar basal-body rod protein FlgC [Synergistetes bacterium
          SGP1]
          Length = 139

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 11/67 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTT-----ISPEN 49
          M +      A +          +I  N+ N +         Y RR  +            
Sbjct: 1  MKVFDSMEVAGSALTAHRLWMDTISSNLANINTTRTLSGGPYKRRVPVFAEMLDRTIGGY 60

Query: 50 VTVVTQR 56
            +   R
Sbjct: 61 RDIGGVR 67



 Score = 46.2 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VNL  E++ ++   ++Y  +  ++    +M    LE ++
Sbjct: 99  NVNLVREMTDMLVASRAYEANLSVVTTAREMWNGALEVMR 138


>gi|290474970|ref|YP_003467854.1| flagellar basal body rod cell-proximal protein [Xenorhabdus
          bovienii SS-2004]
 gi|289174287|emb|CBJ81077.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Xenorhabdus bovienii SS-2004]
          Length = 134

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMT-TISPENVTVV 53
          MSLL++F+ A +  +  SQ+      N+ NA          Y  +  +    +P    + 
Sbjct: 1  MSLLSIFDIASSALSAQSQRLNVSASNMANADSVVGPDGEPYRAKQVVFRVAAPAGQEIG 60

Query: 54 TQRSE 58
            R  
Sbjct: 61 GVRVS 65


>gi|298530645|ref|ZP_07018047.1| flagellar basal-body rod protein FlgC [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298510019|gb|EFI33923.1| flagellar basal-body rod protein FlgC [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 146

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          MS +   +   +  +        I  N+ NA+     +   Y R+  +   +P
Sbjct: 1  MSFMKSLDIGASALSAERTHLNVISMNLANANTTRTPEGGPYERKSVLFRSTP 53


>gi|307318906|ref|ZP_07598337.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83]
 gi|306895320|gb|EFN26075.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83]
          Length = 241

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/187 (6%), Positives = 39/187 (20%), Gaps = 10/187 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  ++  NI N++   +   +        +         ++  
Sbjct: 1   MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTRPTKVSYVSEG- 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            ++ L   + A+ +      F    +   +             +   +       +    
Sbjct: 60  -EEFLSTKTGALARTGSALDFAIKGDAWFSIGTPGGPALTRDGRFTLTETGELVTIKGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                       +I   AD  I      +          +        
Sbjct: 119 VLDAG--------GAPIQLNGGAGEITVGADGAIHQNGVQIALLGLYEADFSKGFMRYDN 170

Query: 183 SKHDAHD 189
           S      
Sbjct: 171 SSVMPAA 177


>gi|220905030|ref|YP_002480342.1| hypothetical protein Ddes_1767 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869329|gb|ACL49664.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 133

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 1/132 (0%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                     +     +   +A     + +      +        G       L+     
Sbjct: 2   SGINTSMQLGASAMNTHSWGMAVSAHNVANVSTPGFEPQRAVYATGPAGQGVRLDAVLQR 61

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
            G +    +  +       V    +    ++  G NL  E+  +I  + +Y  +   +  
Sbjct: 62  NGPVGTGGTAYNAAQAVYDVTAG-LPLEAASPSGTNLAREMVSMISTQHAYKANATTVRT 120

Query: 468 TDKMLQTLLEGV 479
            D ML TLL+  
Sbjct: 121 ADAMLGTLLDIK 132



 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 29/130 (22%), Gaps = 5/130 (3%)

Query: 1   MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
           MS +        +  N  S   A    N+ N     +  +  +    P    V      +
Sbjct: 1   MSGINTSMQLGASAMNTHSWGMAVSAHNVANVSTPGFEPQRAVYATGPAGQGV----RLD 56

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +                           + A      +    +  +  +  +Y  N +
Sbjct: 57  AVLQRNGPVGTGGTAYNAAQAVYDVTAGLPLEAASPSGTNLAREMVSMISTQHAYKANAT 116

Query: 120 EDILGKTVID 129
                  ++ 
Sbjct: 117 TVRTADAMLG 126


>gi|258404726|ref|YP_003197468.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796953|gb|ACV67890.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM
           5692]
          Length = 243

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/127 (7%), Positives = 27/127 (21%), Gaps = 2/127 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M + +      +       +   +  N+ N DN  + +   +     +N           
Sbjct: 1   MPIFSGLAAPLSGAALERTRLQVLSNNLANIDNAGFKQDRLLFETQLDNAQAGRTGEGTS 60

Query: 61  NMFDKVLHAHSSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
            +     H   S  G Q   +                 +              +      
Sbjct: 61  RLQMTSTHTDFSQGGLQHTGRPLDLAIKGGGFFKVATDDGFAYTRHGSFVLQPDGALVTP 120

Query: 119 SEDILGK 125
           + + +  
Sbjct: 121 TGEQVVG 127


>gi|167750706|ref|ZP_02422833.1| hypothetical protein EUBSIR_01684 [Eubacterium siraeum DSM 15702]
 gi|167656385|gb|EDS00515.1| hypothetical protein EUBSIR_01684 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 37/159 (23%), Gaps = 7/159 (4%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS-- 71
             N  +   +I  N+ N +   Y + +       E + +V+ R +    F +     S  
Sbjct: 1   MLNHQRSLDAISNNLTNINTAGYKKDEIRMNTFQEELILVSNRRKTSGKFVQTYVDTSKS 60

Query: 72  ----SAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDILGKT 126
               S+               +       N +       +     E Y        +   
Sbjct: 61  NLEQSSFEFTESPFDIGIQGNVYFNIQGTNGNVYQTRCGQFELDGEGYLCLNDSGRVLGQ 120

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
             +           +   +     +  + + L       
Sbjct: 121 NGEIYIGNDDFIVDNEGNILNENGEVIERLRLSYIPENA 159


>gi|167945456|ref|ZP_02532530.1| flagellar hook protein FlgE [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 175

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/158 (8%), Positives = 37/158 (23%), Gaps = 16/158 (10%)

Query: 17  ASQQFASIVRNIENADNKNYVRRDTMT----------TISPENVTVVTQRSENKNMFDKV 66
           A+        NI N+    +                   +  +   V      +      
Sbjct: 1   ATTDLEVTGNNIANSSTTGFKESRAEFADIFASSISDASNATSGQGVRTTKVAQQFRQDS 60

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           +   ++ +      + F  +++         +               Y  + +   L   
Sbjct: 61  IEFTANNLDLGINGEGFFTMEQ------PNGDRSYTRAGAFNVDRNGYVVDHTGSRLQIF 114

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
              +A+    N  T+      + + A        ++L 
Sbjct: 115 PPVDADGTSFNTGTTVDLNLPVVSGAPGATSQVTASLN 152


>gi|297618421|ref|YP_003703580.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297146258|gb|ADI03015.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 256

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             + + Y     V   +E+  LI V ++Y  + K++   D+ L   +  V
Sbjct: 204 GQVIQGYLELSNVVAVKEMVELISVLRAYEANQKVVQAHDQTLDAAINRV 253



 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/206 (6%), Positives = 43/206 (20%), Gaps = 26/206 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A +       +   I  N+ NA    + +   + T                  
Sbjct: 1   MIRGLYTACSGMLLQLAKQDVIANNLANASTPGFKKDLAVCTAFPDMMINRLGEVKVVAG 60

Query: 45  --------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
                         T    ++ + +     +    + +        F  ++         
Sbjct: 61  KEEPIPPVAIGRLGTGAAIQTISTDFSAGAVQKTDNPLDLAIAGDGFFVIQTPQGEKYTR 120

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
           N S       +  + + Y        +         +   N       +  +R    +  
Sbjct: 121 NGSFRIGDDGILTTAQGYPVLGRSGPINIGDQTFTIDEKGNLLVGDEVLDTLRVVRFENN 180

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTA 182
              +       +  +     ++    
Sbjct: 181 SELVKTGDDLFTNPSGTPVDVEDGQV 206


>gi|241204820|ref|YP_002975916.1| hypothetical protein Rleg_2100 [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240858710|gb|ACS56377.1| protein of unknown function DUF1078 domain protein [Rhizobium
          leguminosarum bv. trifolii WSM1325]
          Length = 101

 Score = 48.9 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
          MSL  + + A +     + + ++I  NI N    +Y R +T  T            
Sbjct: 1  MSLSDIASTALSGMRAQATRVSAIANNIANTSTPDYARLNTSLTSVVSGGVQAVVS 56



 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           T  V+   EL+ LI+ EQSY  +  +      M + L+   +
Sbjct: 59  TSEVDQATELTDLIEAEQSYKANAVVFETGADMWEMLMSIKR 100


>gi|291287005|ref|YP_003503821.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884165|gb|ADD67865.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 209

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 29/132 (21%), Gaps = 11/132 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61
           ++       N  +       +   N+ N +   +              V++ + R     
Sbjct: 1   MMQGLYTGANAISVYKNSLINTANNVANINTPYFKSNTLQLNEMEQGGVSISSIRQNQDL 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                  +    +           L++        N +            E    +    
Sbjct: 61  ---SYTISSGRTLDFVIDGSGQFRLEDN-------NGTSYTRNGVFYLDAEGDVVDSGGR 110

Query: 122 ILGKTVIDNAEE 133
            L + V+   E 
Sbjct: 111 KLLEDVVKPGES 122



 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 19/48 (39%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +         V+   E+  +I  + +++ +   +   D ML  ++  V
Sbjct: 161 LRSGMLEVSDVDYAREVVDMIVTKNAFSANTSSVRTYDDMLGLIVNLV 208


>gi|218674651|ref|ZP_03524320.1| flagellar hook protein FlgE [Rhizobium etli GR56]
          Length = 77

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 24/77 (31%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          MS+      A +  +  + + +++  NI NA+   Y    T  +      +     S   
Sbjct: 1  MSIFGSMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGV 60

Query: 61 NMFDKVLHAHSSAIGQQ 77
              +   +    I   
Sbjct: 61 QTSVRQAISQQGDISYT 77


>gi|15639388|ref|NP_218837.1| flagellar basal body rod protein FlgC [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025630|ref|YP_001933402.1| flagellar basal body rod protein FlgC [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322680|gb|AAC65385.1| flagellar basal-body rod protein (flgC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018205|gb|ACD70823.1| flagellar basal-body rod protein [Treponema pallidum subsp.
           pallidum SS14]
          Length = 129

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             + +     Y     V++  E+  LI   ++Y  +  +I  + +M Q  LE  +
Sbjct: 75  DAILSGPKAGYVEYPNVDIVTEMVDLISASRAYEANISVISGSKEMFQRALEIAR 129


>gi|220932527|ref|YP_002509435.1| flagellar basal-body rod protein FlgC [Halothermothrix orenii H
          168]
 gi|219993837|gb|ACL70440.1| flagellar basal-body rod protein FlgC [Halothermothrix orenii H
          168]
          Length = 145

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          +L   N + +       +   I  NI N +  
Sbjct: 1  MLDSLNISASGLTAQRLRMDIIADNIANVNTT 32



 Score = 40.8 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            E Y     VN+  E+  +I   ++Y  +   +     M
Sbjct: 97  EEGYVAMPNVNITTEMVDMISASRAYEANVTALNTAKNM 135


>gi|126463747|ref|YP_001044861.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105411|gb|ABN78089.1| protein of unknown function DUF1078 domain protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 239

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 7/230 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++  S+  NI N     + R   + T   + +      S       + +   
Sbjct: 12  QSGLM---REMQSVANNIANISTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              + +      F  + E     +               + E    +   + L       
Sbjct: 68  QGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNRLLDAGAAP 127

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                            + A       + +      L       +     +A        
Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                    + S +  +S I R  +    Y    + L     R     + 
Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234


>gi|330502732|ref|YP_004379601.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina
          NK-01]
 gi|328917018|gb|AEB57849.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina
          NK-01]
          Length = 147

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A    +  S +  +I  NI NA+  +      Y  R  +     +      
Sbjct: 1  MSLASVFNIAGTGMSAQSTRLNTISSNIANAETVSSSLDQTYRARHPVFATVFQQAQGGD 60



 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +++    +MLQ +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNVEMMNTAKQMLQRVL 143


>gi|302387773|ref|YP_003823595.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1]
 gi|302198401|gb|ADL05972.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1]
          Length = 267

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 28/132 (21%), Gaps = 25/132 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   F    +     ++    I  N+ N     Y     ++T                  
Sbjct: 1   MFHGFYNLASGMLYQNRNLNVISNNMVNVSTPGYKSDKLVSTTFKEEMLYRNGNRNKSNP 60

Query: 46  --SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
                   +   R+ N +     L      +        F  +++         N     
Sbjct: 61  VEIGTVSMIRAARNTNTSYDQGTLEETGGNLDFALTKPGFFTIEDT------NGNRLYTR 114

Query: 104 ISKLRDSLESYS 115
               R   E Y 
Sbjct: 115 NGSFRLDDEGYL 126



 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 72/216 (33%), Gaps = 9/216 (4%)

Query: 262 NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIAD 321
           N+ + V  G +  +   R++     Q  L+E    L  + ++         N   L+  +
Sbjct: 56  NKSNPVEIGTVSMIRAARNTNTSYDQGTLEETGGNLDFALTKPGFFTIEDTNGNRLYTRN 115

Query: 322 GIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS 381
           G   LD++    +S    V  +  +      D  +V K        L G         D 
Sbjct: 116 GSFRLDDEGYLCLSSMGRVLGEDGNPIELPSDHITVDKSGNIYEVPLKGLGTDE----DG 171

Query: 382 FNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
            +       + G        +Y +   G      + +        + +  I         
Sbjct: 172 GDSEDTEPTLLGKIGVADFADYTQLVKGDNGTFTTTAEATAANGGIQWKTI-----ERSN 226

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++  EE++ ++  +++   + +++   D+++  ++ 
Sbjct: 227 IDPIEEMTSMMSSQRASQSAAQVLKMYDQLMSRIVS 262


>gi|229918625|ref|YP_002887271.1| flagellar basal-body rod protein FlgC [Exiguobacterium sp. AT1b]
 gi|229470054|gb|ACQ71826.1| flagellar basal-body rod protein FlgC [Exiguobacterium sp. AT1b]
          Length = 142

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 19/74 (25%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTISP--- 47
          M +   F+ + +   +   +  ++  NI NA              Y R+ T+   +P   
Sbjct: 1  MGMFDSFHISASALTSQRLRMDTVSANIANAQTTRGKLVDGEWQPYTRKMTVLQEAPFRK 60

Query: 48 ------ENVTVVTQ 55
                  V V   
Sbjct: 61 RLDAVNGGVQVSQI 74


>gi|229017032|ref|ZP_04173952.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1273]
 gi|229023213|ref|ZP_04179724.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1272]
 gi|228738138|gb|EEL88623.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1272]
 gi|228744303|gb|EEL94385.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1273]
          Length = 137

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSALTTARKWMEVTSNNIVNANTTGAPDAEPYHRRSVVLESN 50


>gi|78357998|ref|YP_389447.1| flagellar basal-body rod protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
 gi|78220403|gb|ABB39752.1| flagellar basal-body rod protein, putative [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
          Length = 125

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMFDKVLH 68
              N  S + A    NI NA    +  R+ +    P  + V V   R   ++     L 
Sbjct: 7  LQALNAFSMRQAVTADNIANASTDGFRSREVVLETGPQDQGVQVADIRRRQESQAMDELR 66

Query: 69 AHSSAIGQQ 77
             +   + 
Sbjct: 67 REQALNAET 75


>gi|27381995|ref|NP_773524.1| flagellar basal body rod protein FlgF [Bradyrhizobium japonicum
           USDA 110]
 gi|27355165|dbj|BAC52149.1| flagellar basal body rod protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/200 (8%), Positives = 49/200 (24%), Gaps = 2/200 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +      +      ++  +I  N+ N +   +                        + 
Sbjct: 1   MQSALYVGLSAQVALEKRLQTIANNVANVNTAAFRTDVVKFETVLS--KAGANPVAFSSP 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D ++   +  I +         + +   A    N +      +L+ +     + ++   
Sbjct: 59  GDNIISRETGNITESGNPLDVAVVGQGWLAFAGPNGTVYTRDGRLQIAANGDLQTVAGFP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                 S      I  D ++   + + N+    +     N  +     
Sbjct: 119 VIDAGGAQITLDPNGGPVSIARSGAITQDNNEIGTIGLFNIPTDANLERYGNSGVTPDRP 178

Query: 183 SKHDAHDFLDQRDVLLQKIS 202
           +   A    D       + S
Sbjct: 179 ATAIADFSRDGFKQGYVEGS 198


>gi|221635450|ref|YP_002523326.1| flagellar basal-body rod protein FlgF (Putative proximal rod
           protein) [Thermomicrobium roseum DSM 5159]
 gi|221157298|gb|ACM06416.1| flagellar basal-body rod protein FlgF (Putative proximal rod
           protein) [Thermomicrobium roseum DSM 5159]
          Length = 248

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 27/67 (40%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +        +      +S+ +     V+L + L+ ++   +SY ++ + +   D+ L
Sbjct: 176 VAGNRYRTDATGAPSETTGVSQGFLEASNVDLTQTLTDMLAATRSYQLAARSLQLADETL 235

Query: 473 QTLLEGV 479
           +  +  V
Sbjct: 236 RLAVNSV 242



 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/236 (7%), Positives = 55/236 (23%), Gaps = 16/236 (6%)

Query: 3   LLAVFNKAQNICNNA-SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++    +A        ++Q  ++  N+ N +   Y +++             T R   + 
Sbjct: 1   MIRTIYQAAAGMMAQFARQL-TLATNLANIETPGYRQQE------------STIRDFQQM 47

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              ++    +S IG       ++     +             ++    +  +       +
Sbjct: 48  FLLRLGRGEASPIGTLSTAVRWDKPLVDLRQGSLIETGRPLDLALAGRAFFAIQTPDGVE 107

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                      +           + +         ++ +      L    VV   +  + 
Sbjct: 108 YTRDGRFQLDAQRRLVTADGHPVLGEQGPLVLPAGDIWVEPDGTILVGEQVVGRLLLVEF 167

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                       R       +                V  +   TL + +    ++
Sbjct: 168 PPDAQFEPVAGNRYRTDATGAPSETTGVSQGFLEASNVDLT--QTLTDMLAATRSY 221


>gi|168335334|ref|ZP_02693430.1| Flagellar basal body and hook proteins [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 256

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/250 (6%), Positives = 53/250 (21%), Gaps = 28/250 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A       +++   I  ++ N++   Y +   +                    
Sbjct: 1   MVRGLYTAATGMQVQTRRMDVISNDLANSNTTAYRKDYAVVEAFDEVLMKRLDGINEPPW 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                   +          +     L     +         F  +       +  N    
Sbjct: 61  RYKDLGTVMNGAKVADIYTDFRPGNLILTGISNNLAINGLGFFRV-------ETPNGERL 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                   + +          +       A            +V          + +   
Sbjct: 114 TRDGSFTVNGDGVLVTAXGYPVLGENGQIALGRTFLNEGREMQVLPDGQVVLNTVTINTI 173

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
           ++        +V +A     A+    +      +    + S +  ++ +V   +    Y 
Sbjct: 174 DIVNVDDPQLLVKEADNLFDATGLQLNPINSLIEQGYLESSNVNPVNAMVDMISVSRAYE 233

Query: 222 SDGTTLFETV 231
           ++   +    
Sbjct: 234 ANQRMVQIHD 243



 Score = 40.8 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 63/227 (27%), Gaps = 9/227 (3%)

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           +D +       +     K  A+++  D V+    + ++E         +  +        
Sbjct: 19  MDVISNDLANSNTTAYRKDYAVVEAFDEVLMKRLDGINEPPWRYKDLGTVMNGAKVADIY 78

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                    +  + N L         V        +            L          +
Sbjct: 79  TDFRPGNLILTGISNNLAINGLGFFRVETPNGERLTRDGSFTVNGDGVLVTAXGYPVLGE 138

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR-----SDSHDLHMKSQVV 428
                      N   +     +  V L     N+I  +  +       ++ +L   + + 
Sbjct: 139 NGQIALGRTFLNEGREMQVLPDGQVVLNTVTINTIDIVNVDDPQLLVKEADNLFDATGLQ 198

Query: 429 FN----HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            N     I + Y  +  VN    +  +I V ++Y  + +++   D++
Sbjct: 199 LNPINSLIEQGYLESSNVNPVNAMVDMISVSRAYEANQRMVQIHDEL 245


>gi|291277450|ref|YP_003517222.1| flagellar basal-body rod protein [Helicobacter mustelae 12198]
 gi|290964644|emb|CBG40498.1| flagellar basal-body rod protein [Helicobacter mustelae 12198]
          Length = 164

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M+ L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 1  MAFLSSFDISGYGLSAQRFRTNIISSNIANANTTRTDEGGPYRRQEVVFKA 51


>gi|254466371|ref|ZP_05079782.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium
           Y4I]
 gi|206687279|gb|EDZ47761.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium
           Y4I]
          Length = 238

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 9/140 (6%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRS--ENKNMFD 64
           Q+      ++   I  NI N+    Y +   + +     SP   +V   R+   N +M  
Sbjct: 12  QSGLM---REMRVIANNIANSATTGYRQEGLIFSEFVQSSPGQPSVSMSRANIFNTSMEQ 68

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L               F  ++         + + +   +    +++ Y    +     
Sbjct: 69  GQLTNTGGTFDFAIEGDGFFMIETPQGERLTRSGAFSPNAAGDLVTMDGYRVLDAGRAPV 128

Query: 125 KTVIDNAEEVVQNFNTSARE 144
               D  +  V    + +  
Sbjct: 129 FVPPDAGKIEVGADGSLSAN 148


>gi|86153269|ref|ZP_01071473.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni HB93-13]
 gi|121612733|ref|YP_001000227.1| flagellar basal body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 81-176]
 gi|167005182|ref|ZP_02270940.1| flagellar basal body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 81-176]
 gi|85842995|gb|EAQ60206.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni HB93-13]
 gi|87250029|gb|EAQ72987.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 81-176]
          Length = 164

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77


>gi|328545467|ref|YP_004305576.1| flagellar basal body rod protein [polymorphum gilvum SL003B-26A1]
 gi|326415208|gb|ADZ72271.1| Flagellar basal body rod protein [Polymorphum gilvum SL003B-26A1]
          Length = 241

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 61/213 (28%), Gaps = 7/213 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENK 60
           + +    A +   + S +  ++ RN+ N +   Y   +              V+  +  +
Sbjct: 1   MQSALYVALSAQVSLSNRLETVARNVANMNTAGYRADEIKFAEVLSKAGADPVSFATAGE 60

Query: 61  NMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               +    L    + +        + A++         +         +  +L  Y   
Sbjct: 61  RYISRQHGGLTRTDNPLDVAVEGDGWLAVRTGAGVVYTRDGRMKMDNDGVLRTLNGYDVL 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI--SNLRRFLSELTVVND 175
            +  +      +    V+    T  +      A     I+     +          +  +
Sbjct: 121 DAGGLPILLDREGGMPVIGRDGTVTQGEDVAGALGLFRIDERAKLTRFDNSGVIPDIPAE 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            I+  T+S              +++++++I I+
Sbjct: 181 PIQEFTSSGMVQGYVEGANINPIRELTKLIMIT 213


>gi|291613036|ref|YP_003523193.1| flagellar basal-body rod protein FlgC [Sideroxydans
          lithotrophicus ES-1]
 gi|291583148|gb|ADE10806.1| flagellar basal-body rod protein FlgC [Sideroxydans
          lithotrophicus ES-1]
          Length = 134

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL  +FN A +     SQ+   +  N+ N D+        Y  +  + +  P    V  
Sbjct: 1  MSLFNIFNIAGSAMTAQSQRLNVVASNLANVDSATGPDGKPYKAKQVVFSTVPITGQVGE 60

Query: 55 QRSENKNMFDKV 66
                 + D  
Sbjct: 61 GVKVAAVVEDNS 72


>gi|313903629|ref|ZP_07837019.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466182|gb|EFR61706.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 272

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 41/216 (18%), Gaps = 16/216 (7%)

Query: 6   VFNKAQNICNN---ASQQFASIVRNIENADNKNYVRRDTMTTIS---------PENVTVV 53
               A +         ++ A     + N +   Y     +T                 VV
Sbjct: 27  GLYTAASGMLARVLQQERLA--GD-LANVNTPGYKASRNVTEAFPELLLSRLDGTGAPVV 83

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                   + +                Q      +                       + 
Sbjct: 84  GPLGTGTVVAEPGADMRPGPWVTTGRPQDLALEGDGFFVVMGPGGPAYTRAGNFTVGSQG 143

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           Y +      +  T       V     T   + Q +  DA       ++            
Sbjct: 144 YLQAPDGSPVLDTTGQPL-LVGSAQFTVRPDGQVVVGDAVLGTIARVTFANPAGLRRVGD 202

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
           N       +          ++ VL Q   + + +  
Sbjct: 203 NLWQATAESGPAVPAATPVRQGVLEQSNVDPVQVVV 238


>gi|146307871|ref|YP_001188336.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina ymp]
 gi|145576072|gb|ABP85604.1| flagellar basal-body rod protein FlgC [Pseudomonas mendocina ymp]
          Length = 147

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A    +  S +  +I  NI NA+  +      Y  R  +     +      
Sbjct: 1  MSLASVFNIAGTGMSAQSTRLNTISSNIANAETVSSSIDQTYRARHPVFATVFQQAQGGD 60



 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +++    +MLQ +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNVEMMNTAKQMLQRVL 143


>gi|326319501|ref|YP_004237173.1| flagellar basal body rod protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gi|323376337|gb|ADX48606.1| flagellar basal body rod protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 100

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 3/84 (3%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMF-DKVLHA 69
              A  Q  +   N+ N + + + R+    +  P    V     R+  +    +     
Sbjct: 11 GLRAAQLQLDTSAHNVANMNTEGFRRQTVEQSAVPDQGGVEARVGRAAQEGASPEADAVD 70

Query: 70 HSSAIGQQRLLQSFEALKEMMSAD 93
            SA             ++ M   
Sbjct: 71 QMSATYAFSANLQTLKTEDRMLGS 94


>gi|163733142|ref|ZP_02140586.1| flagellar basal-body rod protein FlgF, putative [Roseobacter
           litoralis Och 149]
 gi|161393677|gb|EDQ18002.1| flagellar basal-body rod protein FlgF, putative [Roseobacter
           litoralis Och 149]
          Length = 237

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/117 (7%), Positives = 29/117 (24%), Gaps = 4/117 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+     +++   +  NI NA    + +   + +   ++V   +  S  +    +     
Sbjct: 12  QSGL---AKEMRVVANNIANAATSGFRQEGVIFSEYVKSVDGASSLSMGQA-DARNTSFA 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              + Q      F    +     +               + +          +    
Sbjct: 68  QGGLTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDGYRVLDAG 124


>gi|254462007|ref|ZP_05075423.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium
           HTCC2083]
 gi|206678596|gb|EDZ43083.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 237

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/128 (7%), Positives = 31/128 (24%), Gaps = 16/128 (12%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVTQRSENKNMFD 64
           Q+      ++ + I  NI NA+   Y +   + +   +       +++ T R+   ++  
Sbjct: 12  QSGLM---REMSVIASNIANANTTGYRQEGLIFSEVIKGESDAPSLSMATARARATSLAP 68

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             +               F  +            +          + +          + 
Sbjct: 69  GTITQTGGPYDVAIDGDGFFQI-------QTPGGTRLSRAGHFMPNNQGDLVTPDGYRVL 121

Query: 125 KTVIDNAE 132
                   
Sbjct: 122 DAGGAPLG 129


>gi|240144761|ref|ZP_04743362.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis
           L1-82]
 gi|257203282|gb|EEV01567.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis
           L1-82]
 gi|291534609|emb|CBL07721.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1]
 gi|291540626|emb|CBL13737.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4]
          Length = 264

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/252 (9%), Positives = 67/252 (26%), Gaps = 11/252 (4%)

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
           + +  ++     N Y     +N  F D + +     S+    +    + +    +     
Sbjct: 20  DILSNNLANADTNGYKKEGATNQTFADELAIKIKDTSSYGMPQKLGTMSM-GVHIGETYT 78

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
              +    +  + ++          +     A       ++    +  T         + 
Sbjct: 79  DYSQGNFRVTDNATDFALDGDGFFAIAYTDKAGNTSVKYSRDGAFVVNTAGYLVTKDGDY 138

Query: 349 SFLRDGGSVSKKFL-WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              ++G   +       V                 N+      V  I     L +Y  N 
Sbjct: 139 VLNQNGAMNADAGARIQVDPNVPITVDEKGNIFQNNQQVGTIGVVDIADYNYLAKYGENM 198

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              +      +    +    +          +  +N+  E+  +I + +++    K+I  
Sbjct: 199 YDLVNGGARQASTAKVTQGCI---------ESSNINVVSEMVNMITISRAFQAGQKVINA 249

Query: 468 TDKMLQTLLEGV 479
            D+ L   +  V
Sbjct: 250 VDETLDKAVNQV 261



 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/179 (8%), Positives = 35/179 (19%), Gaps = 23/179 (12%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A     N   +   +  N+ NAD   Y +                           
Sbjct: 4   GLYTAYTGMINEQNRLDILSNNLANADTNGYKKEGATNQTFADELAIKIKDTSSYGMPQK 63

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                  V       +          +A         F A+    +      +       
Sbjct: 64  LGTMSMGVHIGETYTDYSQGNFRVTDNATDFALDGDGFFAI--AYTDKAGNTSVKYSRDG 121

Query: 106 KLRDSLESYSKN-LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
               +   Y      + +L +    NA+   +        +         +   ++  +
Sbjct: 122 AFVVNTAGYLVTKDGDYVLNQNGAMNADAGARIQVDPNVPITVDEKGNIFQNNQQVGTI 180


>gi|153951079|ref|YP_001398445.1| flagellar basal body rod protein FlgC [Campylobacter jejuni
          subsp. doylei 269.97]
 gi|152938525|gb|ABS43266.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. doylei 269.97]
          Length = 164

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    + + I  NI N +     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMSVISSNIANVNTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++ +++ +  +  L  
Sbjct: 53 ---DFDKLLNEQINKNNNFLKYENPLND 77


>gi|32266589|ref|NP_860621.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC
           51449]
 gi|32262640|gb|AAP77687.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC
           51449]
          Length = 277

 Score = 48.5 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/225 (6%), Positives = 51/225 (22%), Gaps = 20/225 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTVVTQ 55
           + + +            +   I  N+ N +   + R D +            E + +   
Sbjct: 1   MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60

Query: 56  RSENKNMFDKVL------------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             +     ++ +             +  S       L      +         +      
Sbjct: 61  TRKAAKFLNRTMDRVPIISEEYTDRSIGSLAQTDNTLDFALQHQNAFFVVKTPDGIRYTR 120

Query: 104 ISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
                   + +  +     +L +  ++  E +                         I+ 
Sbjct: 121 DGNFHIDADGHIVSKEGHLVLSRDGLEEGEGISVPTGMHLESDNSGNLYLRNINNDAIAE 180

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                +   V  +  ++      + +++ ++R      +     I
Sbjct: 181 QINIGALAVVGFENPRYLKKVGKNFYEYPEERLEERDILQNNGII 225


>gi|229544391|ref|ZP_04433449.1| flagellar basal-body rod protein FlgC [Bacillus coagulans 36D1]
 gi|229324876|gb|EEN90553.1| flagellar basal-body rod protein FlgC [Bacillus coagulans 36D1]
          Length = 149

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 10/58 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPE 48
          MS+    N +    +    +   I  NI NAD             Y R++ +      
Sbjct: 1  MSMFTGMNISSEALSAQRLRMDVISSNIANADTTRDTYVNGKWQPYRRKEVVLAAGGG 58


>gi|330830302|ref|YP_004393254.1| flagellar basal-body rod protein FlgF [Aeromonas veronii B565]
 gi|328805438|gb|AEB50637.1| Flagellar basal-body rod protein FlgF [Aeromonas veronii B565]
          Length = 248

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/134 (7%), Positives = 31/134 (23%), Gaps = 12/134 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R          +       
Sbjct: 1   MDHLLYIAMSGAKETMNSLAVRGNNLANANTTGFKSDFEQARSMQAFGEGLPSRVFAMAE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              +N+   +L      +        + A+++               +  L+ +     +
Sbjct: 61  RPGQNLQHGMLMTTGRDLDVAVDGPGWIAVQD------PKGGEAYTRMGNLQVNATGNLQ 114

Query: 117 NLSEDILGKTVIDN 130
             +   +       
Sbjct: 115 TSTGLNVVDDGGQP 128



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +  +      +         VN+ +E++ LI++++ +    K++   ++
Sbjct: 188 QNEPASANVG-LIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEE 236


>gi|126175148|ref|YP_001051297.1| flagellar basal body rod protein FlgC [Shewanella baltica OS155]
 gi|125998353|gb|ABN62428.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS155]
          Length = 138

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL ++F+ A +  +  S +  +   NI NAD
Sbjct: 1  MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|600722|gb|AAA92801.1| flagellar hook FlgE [Helicobacter mustelae]
          Length = 403

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/357 (7%), Positives = 79/357 (22%), Gaps = 21/357 (5%)

Query: 26  RNIENADNKNYVRRDTMTTIS--------------PENVTVVTQRSENKNMFDKVLHAHS 71
            NI N +   +                                      N+         
Sbjct: 1   NNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLGVNVNSTTKVFSQ 60

Query: 72  SAIGQQRLLQSFEALKEMMSADDHY--NNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            +     +        +                   +               ++   + D
Sbjct: 61  GSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLVTNGGYVVQGWMKD 120

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
           +     +            R D  K I+    +    +      N +++    +      
Sbjct: 121 DLRNAEKISED-----DFFRVDTTKPIQNIQIDPAMMMPARASSNISLRANLNAGRHVDQ 175

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
             +   +     + + GI+ I  +++++     D   LF      I   +     V+ ++
Sbjct: 176 VANVFGLGSTTKTPVDGINPIYDSHDNLTQKAEDFGALFTQSGDAIGLTENQGIWVSYKT 235

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           + +  D    S      +   +I        S +       + +  +   +  E     G
Sbjct: 236 SEMVNDIEATSGESSIEINHTRISFTNDSAASGISSVVAAQNAINALKQKTGVEAFVDNG 295

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
                    +    +  + ++    +       +  S+ +  R   + S        
Sbjct: 296 MLRLQNKNNMDGDAEVKNIRITADGTGAFANFIEGDSDITAFRYRYTTSASPDSGTG 352


>gi|32266907|ref|NP_860939.1| flagellar basal body rod protein FlgC [Helicobacter hepaticus
          ATCC 51449]
 gi|32262959|gb|AAP78005.1| flagellar basal body rod protein FlgC [Helicobacter hepaticus
          ATCC 51449]
          Length = 163

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +  +I  NI NA+     +   Y RR+ + 
Sbjct: 3  LSSFDISGYGLSAQRVRINTISSNIANANTTRTDEGGPYRRREVIF 48


>gi|317050614|ref|YP_004111730.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5]
 gi|316945698|gb|ADU65174.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5]
          Length = 259

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 29/66 (43%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +               + + Y  +  VN+  E++ ++++ +S++   K+I   D+ +
Sbjct: 190 NQLARVSADVEAYPAEHFELHQGYLESSNVNIVREMTDMVELNRSFSAYQKMISSIDETV 249

Query: 473 QTLLEG 478
            TLL+ 
Sbjct: 250 STLLQA 255



 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 33/132 (25%), Gaps = 22/132 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--------------------RDTM 42
           ++     + +     S++  +   N+ N +   + +                    R T+
Sbjct: 1   MVNGLYTSASGMVLQSRKLDASANNLANVNTVGFKKDIISVDNFRAKSTTREEDAWRRTL 60

Query: 43  TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
              +  N         + +     LH   +++       +F  +            +   
Sbjct: 61  FNETINNTH--NIAKIHVDHSQGALHQTGNSLDVGINGNAFLVVDTPFGERYTRGGNLQI 118

Query: 103 YISKLRDSLESY 114
                  + E Y
Sbjct: 119 DSEGRLTTKEGY 130


>gi|315497882|ref|YP_004086686.1| flagellar basal-body rod protein flgf [Asticcacaulis excentricus CB
           48]
 gi|315415894|gb|ADU12535.1| flagellar basal-body rod protein FlgF [Asticcacaulis excentricus CB
           48]
          Length = 249

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/200 (7%), Positives = 43/200 (21%), Gaps = 7/200 (3%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTT-ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76
            ++      N+ N +   Y     +           +  R+     +DK +    S    
Sbjct: 16  RRELDVTANNLANMNTNGYKFEQLLVEPEEGRPAYNLPIRAPANFAYDKGVGRDFSQGAL 75

Query: 77  QRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                 ++   E        +  N            S +          +     +    
Sbjct: 76  TTTGGDYDVGIEGEGAFFVINGANGPLYTRDGAFTVSPQGVLVTGDGLPVQGDGGEIRLN 135

Query: 134 VVQNFNTSAREVQKIRADADKEI---ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                 + + +    +   D  +    + +             ++  +  T    D    
Sbjct: 136 PEFGAPSISADGVVSQRSTDGIVRVGRISVVRFASLSDLEKQGDNRFRATTNVAPDPAPD 195

Query: 191 LDQRDVLLQKISEIIGISTI 210
              R  +++  +        
Sbjct: 196 ARLRQGMIETSNVNALSEVT 215


>gi|113969604|ref|YP_733397.1| flagellar basal body rod protein FlgC [Shewanella sp. MR-4]
 gi|114046836|ref|YP_737386.1| flagellar basal body rod protein FlgC [Shewanella sp. MR-7]
 gi|113884288|gb|ABI38340.1| flagellar basal-body rod protein FlgC [Shewanella sp. MR-4]
 gi|113888278|gb|ABI42329.1| flagellar basal-body rod protein FlgC [Shewanella sp. MR-7]
          Length = 138

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL ++F+ A +  +  S +  +   NI NAD
Sbjct: 1  MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|90423029|ref|YP_531399.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          BisB18]
 gi|90105043|gb|ABD87080.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          BisB18]
          Length = 141

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
          M        A +     + +   I  NI N    A       Y R+    T +
Sbjct: 6  MDFSRSMGIATSGLRAQAARMRVISENIANAESTAQTPGGDPYRRKVPTFTSA 58


>gi|309388845|gb|ADO76725.1| flagellar basal-body rod protein FlgF [Halanaerobium praevalens DSM
           2228]
          Length = 250

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 7/171 (4%)

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPD 373
                      D         S    +  +     S   +    +   L           
Sbjct: 75  KDMSQGDFKRTDNALDFAIEGSGFFVIETENGEKYSRDGNFTINADSELITQSGNNVLDS 134

Query: 374 LINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI-----GWLEKNRSDSHDLHMKSQVV 428
             N      +++F       I  N  L       +       L +   + ++L  +++ +
Sbjct: 135 NGNRIQIIPDQDFRVSAEGQITFNNGLQGAQIGLVDFENEAELAQTGDNLYELQGETEPI 194

Query: 429 FNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            +   I++ Y     V + EE++ +IK  + Y  + K+I   D+ L  ++ 
Sbjct: 195 ASQAGIAQGYVEGSNVQIVEEMAKMIKTTRHYESNQKVISSIDESLNKVIN 245



 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 39/166 (23%), Gaps = 24/166 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +      ++      N+ N +   + + + +T                   
Sbjct: 1   MIRGLYTAASSMGVLEKKTNIRSNNLANVNTNGFKKSEAITASFPEMLLSKIEADKADQQ 60

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
                T        K+M         +A+        F          +  N        
Sbjct: 61  IGSLATGAYLERSFKDMSQGDFKRTDNALDFAIEGSGF-------FVIETENGEKYSRDG 113

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
               + +S     S + +  +  +  + +       + E Q    +
Sbjct: 114 NFTINADSELITQSGNNVLDSNGNRIQIIPDQDFRVSAEGQITFNN 159


>gi|20807892|ref|NP_623063.1| flagellar basal body protein [Thermoanaerobacter tengcongensis
          MB4]
 gi|20516457|gb|AAM24667.1| Flagellar basal body protein [Thermoanaerobacter tengcongensis
          MB4]
          Length = 131

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
              A+ +   I  NI N D  N+ R +     
Sbjct: 11 GLYAATVRSNVIANNIANVDTPNFKRSEVKFEE 43


>gi|229542505|ref|ZP_04431565.1| protein of unknown function DUF1078 domain protein [Bacillus
           coagulans 36D1]
 gi|229326925|gb|EEN92600.1| protein of unknown function DUF1078 domain protein [Bacillus
           coagulans 36D1]
          Length = 276

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
               V      NP        ++ +       +     L   Y D   ++F    V  + 
Sbjct: 132 NNRSVLTDANGNPVLDEHNAMITFRGNVADYAIRPNGTLQVAYSDGTRESFNL-GVVQMR 190

Query: 396 TNVTLLEYARNSIGW-LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
               L +   N +      N ++ +     +      + +       V+L  E++ L K 
Sbjct: 191 NPQVLEQVGNNLLRLPQNVNAANVYTDLTGATRSQISMQQGVLEKSNVDLSTEITELTKT 250

Query: 455 EQSYNISNKLIMFTDKMLQTLLEGVK 480
           E+ Y   +K I  +D+M+  L+  ++
Sbjct: 251 ERLYQFQSKTITLSDQMMG-LVNNIR 275



 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +      A N       +  +I  N+ N D   Y  +    T  
Sbjct: 1  MNQSMLTATNTLRQLQDKIDTISHNVANVDTNGYKSKQASFTDL 44


>gi|218674738|ref|ZP_03524407.1| flagellar hook-associated protein FlgK [Rhizobium etli GR56]
          Length = 68

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 33/67 (49%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          MSL +  N AQ+I NN   Q + +  NI NA NK+YVRR  M T S     VV      +
Sbjct: 1  MSLTSALNTAQSIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSLNGAQVVQINRAQE 60

Query: 61 NMFDKVL 67
          +   +  
Sbjct: 61 DALLRQY 67


>gi|153001474|ref|YP_001367155.1| flagellar basal body rod protein FlgC [Shewanella baltica OS185]
 gi|160876205|ref|YP_001555521.1| flagellar basal body rod protein FlgC [Shewanella baltica OS195]
 gi|151366092|gb|ABS09092.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS185]
 gi|160861727|gb|ABX50261.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS195]
 gi|315268395|gb|ADT95248.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS678]
          Length = 138

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL ++F+ A +  +  S +  +   NI NAD
Sbjct: 1  MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|163782129|ref|ZP_02177128.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882661|gb|EDP76166.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 242

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 27/147 (18%), Gaps = 23/147 (15%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT------------ 54
                +      ++ A    N+ N D  ++ R     +    ++                
Sbjct: 8   LFILSSGMLLQERKLAVTTNNLANLDTPSFKRDFVEVSSWYTDMGAQVPNLSPENPTNNF 67

Query: 55  ----QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                     ++    L    +               E   A               R  
Sbjct: 68  VYPMMTRIFTDLSQGSLRETGNTFDLAIEG-------EGFFAVRTPEGVMYTRKGNFRLD 120

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQN 137
            E +        +     D  + V   
Sbjct: 121 SEGFLVTEKGYRVLDRANDEVKVVGNR 147



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                      + + +     VN   E+  LI+  +++    +LI   D++   +   V+
Sbjct: 183 TGTPQPAEGFSVRQGFIELSNVNGIVEMVRLIETSRAHETYARLIQAVDEVQNRVNTIVR 242


>gi|302670716|ref|YP_003830676.1| flagellar basal-body rod protein FlgC [Butyrivibrio proteoclasticus
           B316]
 gi|302395189|gb|ADL34094.1| flagellar basal-body rod protein FlgC [Butyrivibrio proteoclasticus
           B316]
          Length = 149

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 36/151 (23%), Gaps = 9/151 (5%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTISPENVTVV 53
           M++   FN   +       +   I  NI NA+          Y R+              
Sbjct: 1   MNIFDSFNINSSGMTAQRFRMDIISENIANANTTRTKDGDTPYTRKVVRFAEKGTQTPFS 60

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             R  N+ +             Q      +  + +    D   N   T+        + +
Sbjct: 61  --RILNERLDHYSGRGVKVTQVQDDTWTQYNIVYDPSHPDADANGYVTYPNVNTVTEMTN 118

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
                       T  D ++ +        + 
Sbjct: 119 LIDASRSYEANATAFDASKNIAARGLELGQG 149


>gi|298529927|ref|ZP_07017329.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509301|gb|EFI33205.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 261

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 34/161 (21%), Gaps = 6/161 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A     +   +  +I  N+ N +   Y R                    N  +
Sbjct: 1   MQDEMYSAFFGAMSQEAKMNTITNNLANVNTTGYKRDKIAFEDVFT-RYASDYGDPNMTL 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D++    S    Q R       L++                    +           + 
Sbjct: 60  EDRLPWPESKLRSQTRPSPVHLDLQDGDMRKTGNPLDLAISGEGFFE-----VTTPEGET 114

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                             + +  +        EI  + SN+
Sbjct: 115 AYTRNGSFLRNPETGHLVTGQNFELQGEGGPIEIPEDASNI 155



 Score = 43.5 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 53/194 (27%), Gaps = 6/194 (3%)

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            ++Q       L     +        +          +   + +     + +   NP+  
Sbjct: 70  LRSQTRPSPVHLDLQDGDMRKTGNPLDLAISGEGFFEVTTPEGETAYTRNGSFLRNPETG 129

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
              +            +   ++ +      N    +         +        L +  R
Sbjct: 130 HLVTGQNFELQGEGGPIEIPEDASNIAIGENGEVLADGDLLDVINLTTFTDLNALEKKGR 189

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  ++     +      ++     I + Y     V+   E+  +I   +++    K++
Sbjct: 190 QLV-QVKDGADSAPIPAEDAR-----IEQGYLENSNVDPVYEMVNMISTMRNFEALQKMM 243

Query: 466 MFTDKMLQTLLEGV 479
             + +  Q L++ V
Sbjct: 244 TSSHEKDQQLIQQV 257


>gi|255018232|ref|ZP_05290358.1| flagellar hook-associated protein FlgK [Listeria monocytogenes FSL
           F2-515]
          Length = 62

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           S           + ++ES S+  GVN+ EE++ +++ +  Y  + K +   + M++ LL 
Sbjct: 1   SSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLA 60

Query: 478 GV 479
            +
Sbjct: 61  ML 62


>gi|163744348|ref|ZP_02151708.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45]
 gi|161381166|gb|EDQ05575.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45]
          Length = 247

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 45/211 (21%), Gaps = 14/211 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL               +Q      NI NA    Y     +     +N T +       
Sbjct: 9   MSLATSL----------QRQLDITANNIANASTAGYKGEHVVFEALLQNNTAMGDDQAAF 58

Query: 61  NMFDKVLHAH--SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                        +       L      +   S +                  +     L
Sbjct: 59  VSDTGSYIDTRPGALSQTGNPLDVALHGEGWFSYETADGQQAYGRDGSFTLDTQGNLTLL 118

Query: 119 SEDILGKTVIDNAEEVVQ--NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
           S   +        +   +       + +     ++      + + ++    S   +    
Sbjct: 119 SGAKVLDAGGAPIQLPTEGLGDINISEDGTISGSETGPLGRIGVFDVPEIQSYKRLGAGM 178

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
           +     +   A     Q      ++S +  +
Sbjct: 179 LVAPEGAAKPAVAESVQVRQGTLELSNVNPV 209



 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 55/208 (26%), Gaps = 5/208 (2%)

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
           I  + +  +S  G        +ALLQ   ++       + +    +              
Sbjct: 21  ITANNIANASTAGYKGEHVVFEALLQNNTAMGDDQAAFVSDTGSYIDTRPGALSQTGNPL 80

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
           +           +  D +   G   +  ++ Q                  +       G 
Sbjct: 81  DVALHGEGWFSYETADGQQAYGRDGSFTLDTQGNLTLLSGAKVLDAGGAPIQLPTEGLGD 140

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            ++      S ++      +   +     ++  +     +      +    +   V    
Sbjct: 141 INISEDGTISGSETGPLGRIGVFDVPE--IQSYKRLGAGMLVAPEGAAKPAVAESV---Q 195

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYN 459
           + +       VN   E++ LI V+++Y 
Sbjct: 196 VRQGTLELSNVNPVREMTRLIDVQRAYE 223


>gi|146278638|ref|YP_001168797.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556879|gb|ABP71492.1| Flagellar hook protein FlgE-like protein [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 239

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/198 (9%), Positives = 45/198 (22%), Gaps = 4/198 (2%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++  SI  NI N     + R   + T   + +      S       + +   
Sbjct: 12  QSGLM---REMQSIANNIANLSTTGFRREGVVFTEHVKRLDGEASLSMASA-SARHVDLS 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              +        F  + +     +                 E    ++  + L       
Sbjct: 68  QGGLTHTGATFDFAIMGDGFFLIETPQGEHLTRAGSFTPDAEGELVDMDGNRLLDEGGAP 127

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                   +        + +       + +      L            +   +  A   
Sbjct: 128 VFIPPDARDVVLASDGTLSSGGQPIGRIGLWQPTEPLDLRHEGGTRFSAEAGVEPAAGAS 187

Query: 191 LDQRDVLLQKISEIIGIS 208
           L Q  +    ++ I  IS
Sbjct: 188 LIQGSLEESNVAPISEIS 205


>gi|222824065|ref|YP_002575639.1| flagellar proximal rod protein FlgC [Campylobacter lari RM2100]
 gi|222539287|gb|ACM64388.1| flagellar proximal rod protein FlgC [Campylobacter lari RM2100]
          Length = 164

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 17/95 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
             +   + +K +   ++ +  +  L    + K+ 
Sbjct: 53 ---DFNELLNKQITKDNNFLEYENPLNDPASQKDA 84


>gi|217972596|ref|YP_002357347.1| flagellar basal body rod protein FlgC [Shewanella baltica OS223]
 gi|304409980|ref|ZP_07391599.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183]
 gi|307302307|ref|ZP_07582065.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175]
 gi|217497731|gb|ACK45924.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS223]
 gi|304351389|gb|EFM15788.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183]
 gi|306914345|gb|EFN44766.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175]
          Length = 138

 Score = 48.1 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL ++F+ A +  +  S +  +   NI NAD
Sbjct: 1  MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 40.8 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|46205476|ref|ZP_00048498.2| COG4786: Flagellar basal body rod protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 241

 Score = 48.1 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/152 (4%), Positives = 28/152 (18%), Gaps = 2/152 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +      ++  +   N+ N     +   +   +      +         + 
Sbjct: 1   MQNSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSELLAKSSRGDV--AFVDA 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L   +    +           +          +      +L        + +    
Sbjct: 59  GKTALSRVAGPTTKTDSALDVAVQGDAWLGVKGPKGTLYTRDGRLTMDANGQLRTVGGLP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           +            Q           I    ++
Sbjct: 119 VVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQ 150


>gi|327441057|dbj|BAK17422.1| flagellar basal body rod protein [Solibacillus silvestris
          StLB046]
          Length = 154

 Score = 48.1 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+    N   +       +   I  NI N D  
Sbjct: 1  MSIFHSMNTTASALTTQRLRMDVISSNIANVDTT 34


>gi|218528725|ref|YP_002419541.1| flagellar basal body rod protein [Methylobacterium chloromethanicum
           CM4]
 gi|218521028|gb|ACK81613.1| flagellar basal body rod protein [Methylobacterium chloromethanicum
           CM4]
          Length = 242

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/161 (5%), Positives = 33/161 (20%), Gaps = 1/161 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +      ++  +   N+ N     +   +   +            +     
Sbjct: 1   MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSELLARSNRGEV-AFVGPG 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +  A          L         +       ++      +L        + +    
Sbjct: 60  KTTISRAAGPTTKTDSTLDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGGMP 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +            Q           I    ++   L + ++
Sbjct: 120 VVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSI 160


>gi|157165285|ref|YP_001467064.1| flagellar basal body rod protein FlgC [Campylobacter concisus
          13826]
 gi|112800440|gb|EAT97784.1| flagellar basal-body rod protein FlgC [Campylobacter concisus
          13826]
          Length = 166

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          MS L  F+ +    +    +   I  NI NA      +   Y R++ +            
Sbjct: 1  MSYLNDFDISGYGLSAQRFRMNVISSNIANAQTTRTAEGGPYRRQEVIFKEM-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
                 + +  L    S +  +  L  
Sbjct: 53 ---NFDKILNDQLKNSQSLLDYENPLDD 77


>gi|121607563|ref|YP_995370.1| flagellar basal-body rod protein FlgC [Verminephrobacter eiseniae
          EF01-2]
 gi|121552203|gb|ABM56352.1| flagellar basal-body rod protein FlgC [Verminephrobacter eiseniae
          EF01-2]
          Length = 134

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MS+L++FN + +  +  +Q+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSMLSIFNLSGSAISAQAQRLNVVASNLANVDAVAGPDGQPYKARQVVFQTAPMGAPSAA 60

Query: 55 QRSE 58
              
Sbjct: 61 GVRV 64


>gi|149174025|ref|ZP_01852653.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797]
 gi|148847005|gb|EDL61340.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797]
          Length = 542

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 18/100 (18%), Gaps = 11/100 (11%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVV-----------TQRSENKNMFDKVLHAH 70
             IV NI NA    + R        P                         +    +   
Sbjct: 280 DVIVNNIANAGTIGFKRLYVEFESLPYEYVKTPASEEAETEPPIAVGMGSQVLQTRISQT 339

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
           S  + +           +          +      +L   
Sbjct: 340 SGELLKTGRELDIAIEGQGFLQVRLGETTAFTRTGRLIFD 379


>gi|170742326|ref|YP_001770981.1| flagellar basal body rod protein FlgF [Methylobacterium sp. 4-46]
 gi|168196600|gb|ACA18547.1| flagellar basal body rod protein [Methylobacterium sp. 4-46]
          Length = 248

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/206 (5%), Positives = 39/206 (18%), Gaps = 6/206 (2%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
              +      ++   I  N+ N     +  R T                        V+ 
Sbjct: 7   IGLSAQMALGRELEVIANNMANVSTTGFKGRTTHFQEYLMPKARAETFRMPDRRLSYVID 66

Query: 69  A------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           A          I       +     +   A                 + +        ++
Sbjct: 67  AGTPLDLAQGPIESTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLVTSDGNL 126

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +            +       +     +  ++     ++            N        
Sbjct: 127 VLGEGGPIQINPQETGLAIGADGTVSTSQGNRGRIRLVAFADPRQLTNAGANLYAASAPP 186

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208
                   ++   +    +S ++ ++
Sbjct: 187 RPAGPLARIEPGALERSNVSPVLTMT 212


>gi|330839540|ref|YP_004414120.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC
          35185]
 gi|329747304|gb|AEC00661.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC
          35185]
          Length = 137

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              +  Q     A+ +   I  NI N +  N+ + + +    
Sbjct: 8  NRALDVMQRGMGAANLRQEVISHNIANVNTPNFKKSNVVFEDL 50


>gi|163850121|ref|YP_001638164.1| flagellar basal body rod protein [Methylobacterium extorquens PA1]
 gi|240137255|ref|YP_002961724.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens
           AM1]
 gi|254559266|ref|YP_003066361.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens
           DM4]
 gi|163661726|gb|ABY29093.1| flagellar basal body rod protein [Methylobacterium extorquens PA1]
 gi|240007221|gb|ACS38447.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens
           AM1]
 gi|254266544|emb|CAX22308.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens
           DM4]
          Length = 242

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/161 (5%), Positives = 33/161 (20%), Gaps = 1/161 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +      ++  +   N+ N     +   +   +            +     
Sbjct: 1   MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSELLARSNRGEV-AFVGPG 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              +  A          L         +       ++      +L        + +    
Sbjct: 60  KTTISRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGGMP 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +            Q           I    ++   L + ++
Sbjct: 120 VVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSI 160


>gi|284989558|ref|YP_003408112.1| hypothetical protein Gobs_0980 [Geodermatophilus obscurus DSM
           43160]
 gi|284062803|gb|ADB73741.1| protein of unknown function DUF1078 domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 134

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 26/130 (20%), Gaps = 6/130 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS       + +      +   ++  NI N +N        +  R  +            
Sbjct: 1   MSTFDSLGISGSGLLVHRKWLDAVSDNIANINNVTSTDQDAFQERLIVAQAVDYGSGEGG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            R                          +    ++   D            +   ++   
Sbjct: 61  VRVARAEYGSAEGRMVHEPDHPLADANGYVRYPDIDLGDQMTQLIMAQRGYQANLAVVER 120

Query: 115 SKNLSEDILG 124
           +    +  L 
Sbjct: 121 ATTAYQAALQ 130


>gi|307945654|ref|ZP_07660990.1| flagellar basal-body rod protein FlgC [Roseibium sp. TrichSKD4]
 gi|307771527|gb|EFO30752.1| flagellar basal-body rod protein FlgC [Roseibium sp. TrichSKD4]
          Length = 136

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 7/52 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI 45
          M L+     A +     + +   I  NI NA+      +   Y RR      
Sbjct: 1  MDLIKSLFVAASGLKAQNGRMRVIAENIANANSTAKTPDGEPYRRRVPTFQS 52



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E + + + ++SY  +  +I  + +MLQ  ++ +K
Sbjct: 96  NVNTLIETADMREAQRSYEANLNVIQSSRRMLQRTIDILK 135


>gi|255321464|ref|ZP_05362622.1| flagellar basal-body rod protein FlgC [Campylobacter showae
          RM3277]
 gi|255301320|gb|EET80579.1| flagellar basal-body rod protein FlgC [Campylobacter showae
          RM3277]
          Length = 165

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 1  MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          MS   + F+ +    +    +   I  NI NA+     +   Y RR+ +    
Sbjct: 1  MSNYLSDFDISGYGLSAQRFRMNVISSNIANANTVRTAEGGPYRRREVIFKAV 53


>gi|86151838|ref|ZP_01070052.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 260.94]
 gi|148925898|ref|ZP_01809585.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|157414808|ref|YP_001482064.1| flagellar basal body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 81116]
 gi|205355383|ref|ZP_03222154.1| flagellar basaL body rod protein [Campylobacter jejuni subsp.
          jejuni CG8421]
 gi|283954185|ref|ZP_06371710.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 414]
 gi|283955949|ref|ZP_06373439.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 1336]
 gi|315124050|ref|YP_004066054.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni ICDCCJ07001]
 gi|85841467|gb|EAQ58715.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 260.94]
 gi|145844884|gb|EDK21988.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
          jejuni CG8486]
 gi|157385772|gb|ABV52087.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
          jejuni 81116]
 gi|205346617|gb|EDZ33249.1| flagellar basaL body rod protein [Campylobacter jejuni subsp.
          jejuni CG8421]
 gi|283792609|gb|EFC31388.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 1336]
 gi|283794464|gb|EFC33208.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 414]
 gi|284925790|gb|ADC28142.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni IA3902]
 gi|315017772|gb|ADT65865.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni ICDCCJ07001]
 gi|315931721|gb|EFV10676.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 327]
          Length = 164

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77


>gi|168698712|ref|ZP_02730989.1| Flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246]
          Length = 144

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 6/56 (10%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTV 52
          L A    +    +    +   I  NI NA+         Y R+D +          
Sbjct: 6  LFAGSAISGTGMSAERLRMEVIANNIANANTTRSANGGPYRRQDVVFEELLGAAAG 61


>gi|71281915|ref|YP_268223.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea
           34H]
 gi|71147655|gb|AAZ28128.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea
           34H]
          Length = 247

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 17/222 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +      Q  +    N+ NA    +       R          +       
Sbjct: 1   MDKLLYIAMSGAKQNMQALSINANNLANAKTTGFKADLAQARSMQAFGEGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             ++N     +     ++      + F A++                    R +     +
Sbjct: 61  RASQNFDSGSILHTGRSLDMAIEGEGFFAVQ------AEDGQEAYTRGGHFRLTETGALE 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-----ISNLRRFLSELT 171
               +++          +  N    +R+   +   A     ++     I  +      + 
Sbjct: 115 TNDGELVIGENGPITLPLPINNIQISRDGTIMVQPAGAPSSVQEEVGRIKLVNPDTRLVD 174

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
             ND +           D          + S +  I+ +   
Sbjct: 175 KGNDGLFRAKNGGQLIADVNVNVLGGALESSNVNPINEMTDM 216



 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 71/238 (29%), Gaps = 4/238 (1%)

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            + +  M+      ++  I  + +  +   G      + +++    + +     +  +  
Sbjct: 3   KLLYIAMSGAKQNMQALSINANNLANAKTTGFKADLAQARSMQAFGEGLPSRVFSMTERA 62

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           ++            + +       F A   +D      +G    +       +N   L  
Sbjct: 63  SQNFDSGSILHTGRSLDMAIEGEGFFAVQAEDGQEAYTRGGHFRLTETGALETNDGELVI 122

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
           G +        + N+    D       +   + + + V  I                L +
Sbjct: 123 GENGPITLPLPINNIQISRDGTIMVQPAGAPSSVQEEVGRIKLVNPDTRLVDKGNDGLFR 182

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            ++    +   +  V          +  VN   E++ +I +++ + +  K++   +++
Sbjct: 183 AKNGGQLIADVNVNVLG----GALESSNVNPINEMTDMIALQRQFEMQLKMMKTAEEI 236


>gi|327480018|gb|AEA83328.1| flagellar basal body rod protein FlgC [Pseudomonas stutzeri DSM
          4166]
          Length = 147

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MSL +VFN A +  +  S +  +I  NI NA+  
Sbjct: 1  MSLSSVFNIAGSGMSAQSTRLNTISSNIANAETV 34



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     MLQ +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKTMLQKVL 143


>gi|77464905|ref|YP_354409.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides
           2.4.1]
 gi|77389323|gb|ABA80508.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides
           2.4.1]
          Length = 239

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 48/230 (20%), Gaps = 7/230 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++  S+  NI N     + R   + T   + +      S       + +   
Sbjct: 12  QSGLM---REMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              +        F  + E     +               + E    +   + L       
Sbjct: 68  QGGLTHTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNRLLDAGAAP 127

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                            + A       + +      L       +     +A        
Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                    + S +  +S I R       Y    + L     R     + 
Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIEVQRAYEMGQSFLDREDDRIRTTVRT 234


>gi|332559803|ref|ZP_08414125.1| FlgF2 [Rhodobacter sphaeroides WS8N]
 gi|332277515|gb|EGJ22830.1| FlgF2 [Rhodobacter sphaeroides WS8N]
          Length = 239

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 7/230 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++  S+  NI N     + R   + T   + +      S       + +   
Sbjct: 12  QSGLM---REMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              + +      F  + E     +               + E    +   + L       
Sbjct: 68  QGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNRLLDAGAAP 127

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                            + A       + +      L       +     +A        
Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                    + S +  +S I R  +    Y    + L     R     + 
Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234


>gi|307747446|gb|ADN90716.1| Flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni M1]
          Length = 164

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77


>gi|120613057|ref|YP_972735.1| flagellar basal-body rod protein FlgC [Acidovorax citrulli
          AAC00-1]
 gi|120591521|gb|ABM34961.1| flagellar basal-body rod protein FlgC [Acidovorax citrulli
          AAC00-1]
          Length = 134

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++F  + +  +  +Q+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSMFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGGEGAA 60

Query: 55 QRSEN 59
              +
Sbjct: 61 GVRVS 65



 Score = 36.5 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             S+       +   A   +++     + +     D  A     V          G    
Sbjct: 3   MFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGGEGAAGV 62

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNT-----VGVNLQEELSFLIKVEQSYNISNKLIMFT 468
             S   +     + V +                VN  EE+  +I   +SY  + +++  T
Sbjct: 63  RVSAISESQAPGKRVLDPTHPQADAEGYVTHSNVNPVEEMVNMISASRSYQNNVEVLNTT 122

Query: 469 DKMLQTLLEG 478
             +L   L+ 
Sbjct: 123 KSLLLKTLQM 132


>gi|323490138|ref|ZP_08095358.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2]
 gi|323396186|gb|EGA89012.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2]
          Length = 278

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/230 (8%), Positives = 48/230 (20%), Gaps = 30/230 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +      A +     ++Q   +  N+ NA+   +    T+                    
Sbjct: 1   MFRGLYTATSGMMANNRQQQILTNNLSNANTPGFKEDQTVFRAFPEQLIKAVENSKKGTI 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ------RLLQSFEALKEMMSADDH 95
                    T V  +    +     L    +                 +    M+ A   
Sbjct: 61  VPHNIGTLTTGVYTQEGIPSFLQGPLKETGNQTDIALLDELLPTNPDTQQKGSMVFAVAA 120

Query: 96  YNNSP-THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
            +               + +        +    +   +    +F         +   A  
Sbjct: 121 EDGEVRYTKNGSFAVDTQGFLTTSDGFSVLGEDLQPIQVGSADFTVQDNGEILLANGAQG 180

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
           +                  N  +     +   +  F+D  D+L    S +
Sbjct: 181 DRLWVGYTENPQQFVKEGQN--LLRWAGAPEASPQFIDNFDLLDGTPSFM 228


>gi|91204384|emb|CAJ70884.1| strongly similar to flagellar hook protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 250

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/128 (6%), Positives = 25/128 (19%), Gaps = 3/128 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---N 59
           +++             +  A I RN+ N +   Y +   +            + +     
Sbjct: 9   MISGLYTGATNMMGQGEYQAVIARNLANVNTVGYKKNIAVFESFVAGAKNQAKEASEGTG 68

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            ++           +             +                 +   S +       
Sbjct: 69  SSLGKVATDFSPGVMQFTGNELDLAIKGDGFFEVQTKAGIAYTRSGQFMLSRDRTVVTPE 128

Query: 120 EDILGKTV 127
              L  + 
Sbjct: 129 GWPLMSSG 136


>gi|220924579|ref|YP_002499881.1| flagellar basal body rod protein FlgF [Methylobacterium nodulans
           ORS 2060]
 gi|219949186|gb|ACL59578.1| flagellar basal body rod protein [Methylobacterium nodulans ORS
           2060]
          Length = 248

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/206 (5%), Positives = 37/206 (17%), Gaps = 6/206 (2%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
              +      ++   I  N+ N     +  R T                        V+ 
Sbjct: 7   IGLSAQVALGRELEVIANNMANVSTTGFKARTTRFQEYLMPKASAETFRRPDRRLSYVID 66

Query: 69  A------HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
           A          I       +     +   A                 + +        ++
Sbjct: 67  AGTPLDLSQGPIETTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLVTSDGNL 126

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +            +       +        ++     +             N        
Sbjct: 127 VLGDGGPIQFNPQETGAAIGPDGTISTNQGNRGKLRLVRFSDPQALSNAGANLYAATAAP 186

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208
                   ++   V    +S ++ ++
Sbjct: 187 LPAGTQARVEPGAVERSNVSPVLTMT 212


>gi|268317780|ref|YP_003291499.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252]
 gi|262335314|gb|ACY49111.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252]
          Length = 242

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 14/115 (12%)

Query: 17  ASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN------KNMFDKVLHAH 70
             ++ A    N+ N +   Y +         E +        +       ++    L   
Sbjct: 18  QQERLA---NNLANVNTAGYKQERFFVEALNERLDAERSPRSDRRLTQWNDLTQGALEHT 74

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            S +        F  + +          +      + R   E Y + +   ++  
Sbjct: 75  GSPLDVAIEGDGFFVVTDA-----ATGATFYTRAGQFRLDGEGYLRTIDGLLVEG 124


>gi|226313072|ref|YP_002772966.1| flagellar basal-body rod protein FlgC [Brevibacillus brevis NBRC
           100599]
 gi|226096020|dbj|BAH44462.1| flagellar basal-body rod protein FlgC [Brevibacillus brevis NBRC
           100599]
          Length = 152

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 18/117 (15%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPENV 50
           MSL    N + +       +  +I  NI NA+             Y R+    +      
Sbjct: 1   MSLFQGINTSASALTANRLRLDTISSNIANAEVTRANFVDGAWQPYRRKMVELSPQTNGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                     N     +   S + G Q +  +            +  + P       
Sbjct: 61  --------FDNFLQAAVGTVSGSQGGQGVKVTAIQEDNTPFKRVYDPSHPDADQDGY 109


>gi|86149025|ref|ZP_01067257.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni CF93-6]
 gi|88596860|ref|ZP_01100096.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 84-25]
 gi|218562179|ref|YP_002343958.1| flagellar basal body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni NCTC 11168]
 gi|85840383|gb|EAQ57640.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni CF93-6]
 gi|88190549|gb|EAQ94522.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 84-25]
 gi|112359885|emb|CAL34673.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
          jejuni NCTC 11168]
 gi|315928561|gb|EFV07858.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni 305]
          Length = 164

 Score = 47.7 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77


>gi|134095099|ref|YP_001100174.1| basal-body rod protein [Herminiimonas arsenicoxydans]
 gi|133739002|emb|CAL62050.1| Flagellar basal-body rod protein FlgC (Putative proximal rod
          protein) [Herminiimonas arsenicoxydans]
          Length = 134

 Score = 47.7 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSL  +FN A +  +  SQ+   +  NI NA    +     Y  +       P      T
Sbjct: 1  MSLFNIFNVAGSAMSAQSQRLNVVSSNIANAESTTSADGKTYRAKQVEFQSVPMAGATST 60

Query: 55 QRSENKNMFDKV 66
               + + D  
Sbjct: 61 GVKVRQVVEDAS 72


>gi|224437224|ref|ZP_03658201.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818]
 gi|313143684|ref|ZP_07805877.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818]
 gi|313128715|gb|EFR46332.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818]
          Length = 277

 Score = 47.7 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/137 (6%), Positives = 27/137 (19%), Gaps = 19/137 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-------TTISPENVTVVTQ 55
           + + +            +   I  N+ N +   + R D +            E + +   
Sbjct: 1   MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60

Query: 56  RSENKNMFDKVL------------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             +     ++ +             +  S       L                +      
Sbjct: 61  TRKAAKFLNRTMNRVPIISEEYTDRSVGSLAQTDNPLDFALQRDNAFFVIKTPDGIRYTR 120

Query: 104 ISKLRDSLESYSKNLSE 120
                   + +  N   
Sbjct: 121 DGNFNIDNDGHLVNKDG 137


>gi|221640826|ref|YP_002527088.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides
           KD131]
 gi|221161607|gb|ACM02587.1| Hypothetical Protein RSKD131_2727 [Rhodobacter sphaeroides KD131]
          Length = 239

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 7/230 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++  S+  NI N     + R   + T   + +      S       + +   
Sbjct: 12  QSGLM---REMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASA-SARQIDLT 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              + +      F  + E     +               + E    +   + L       
Sbjct: 68  QGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDSDGNRLLDAGAAP 127

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                            + A       + +      L       +     +A        
Sbjct: 128 LFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRH---EGGTRFSAEGGTEPAE 184

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                    + S +  +S I R  +    Y    + L     R     + 
Sbjct: 185 GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234


>gi|254474364|ref|ZP_05087750.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11]
 gi|214028607|gb|EEB69442.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11]
          Length = 239

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 36/123 (29%), Gaps = 9/123 (7%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE--NKNMFD 64
           Q+      ++   +  NI NA    Y     + +     +P   ++   R+   N ++  
Sbjct: 12  QSGLM---REMRVVANNIANAATTGYRSEGLIFSEFIQSAPGQESLSMARANIRNTSLAQ 68

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             L      +        +  ++  M      + + +   +    +++ Y    +     
Sbjct: 69  GQLTQTGGDLDLALEGDGYFMVETPMGERLTRSGTFSTNAAGDLVTMDGYRVLDAGRAPM 128

Query: 125 KTV 127
              
Sbjct: 129 FVP 131


>gi|167034946|ref|YP_001670177.1| flagellar basal body rod protein FlgC [Pseudomonas putida GB-1]
 gi|166861434|gb|ABY99841.1| flagellar basal-body rod protein FlgC [Pseudomonas putida GB-1]
          Length = 147

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +   + +N     
Sbjct: 1  MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGG 60

Query: 55 QRSENKN 61
           +S  ++
Sbjct: 61 SQSLFED 67



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVL 143


>gi|218679061|ref|ZP_03526958.1| hypothetical protein RetlC8_09354 [Rhizobium etli CIAT 894]
          Length = 101

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
          MS+  + N A +     + +  +I  N+ N+    Y R +T  T         T  
Sbjct: 1  MSISGITNTALSGMRAQTTRIGAIANNVANSSTSGYARLNTSLTSVASGGVQATVS 56


>gi|218887603|ref|YP_002436924.1| hypothetical protein DvMF_2517 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758557|gb|ACL09456.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 259

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/247 (6%), Positives = 59/247 (23%), Gaps = 8/247 (3%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           +LF  +  +     +++      +     D +              ++ +  +R   +  
Sbjct: 8   SLFGALTNEHRMNNISNNLANVNTTGYKRDVISFKDTMQLFAHDQIMEPIANVRSKKLFP 67

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               +      +  +  E+  +      +      +    +     +  +          
Sbjct: 68  EPMHVARPRIAVAHTDFEQGSMRYTGNPLDVAISGNAFFKVRTPEGEFYTRNGNFIQTAD 127

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                              +          +    +         +  +N    L +   
Sbjct: 128 GQLVTAMGHAVQGDGGDIALPPGEAVQISDDGQIFAGGALVGQLNMVTVNDLTALEKLGG 187

Query: 406 NSIGWL-EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
           N        N  +              +++ Y     V +  E+  +I+ ++ +    K+
Sbjct: 188 NMYRLRPGSNAGEVPAERAY-------VAQGYLEASNVEVVSEMVNMIEAQRQFEAYQKV 240

Query: 465 IMFTDKM 471
           +  TD +
Sbjct: 241 MQTTDSI 247



 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/154 (7%), Positives = 29/154 (18%), Gaps = 39/154 (25%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------- 46
           SL                +  +I  N+ N +   Y R       +               
Sbjct: 8   SLFGAL--------TNEHRMNNISNNLANVNTTGYKRDVISFKDTMQLFAHDQIMEPIAN 59

Query: 47  ---------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                    P +V        + +     +    + +       +F  ++          
Sbjct: 60  VRSKKLFPEPMHVARPRIAVAHTDFEQGSMRYTGNPLDVAISGNAFFKVR-------TPE 112

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
                       + +          +     D A
Sbjct: 113 GEFYTRNGNFIQTADGQLVTAMGHAVQGDGGDIA 146


>gi|168334478|ref|ZP_02692649.1| Flagellar basal body rod protein [Epulopiscium sp. 'N.t.
          morphotype B']
          Length = 153

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD---NKN---YVRRDTMTTISPE 48
          MS  +  + A         +   I +N+ N +     +   Y RR  +    P 
Sbjct: 1  MSFFSGMDIAATGLTAQRFRLDVITQNLANINSTRTPDGGPYQRRTVLFESIPM 54


>gi|303328382|ref|ZP_07358820.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3]
 gi|302861712|gb|EFL84648.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3]
          Length = 264

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/226 (6%), Positives = 46/226 (20%), Gaps = 20/226 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56
           +                +   I  N+ N +   Y R       +  +      R      
Sbjct: 1   MQDALFSGLFGALTTEHRMNFIANNLANVNTHGYKRDTLAFKDTMASYAHDEIREPLMNL 60

Query: 57  -----------SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYI 104
                           +    +     ++             E         N       
Sbjct: 61  RSAPLFPEPKNMARPRVAVSKIDFSQGSMQFTGDPLDVAINGENAFFRVTTPNGDYLTRN 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD--ADKEIELEISN 162
                S +          L  T  +              + Q I      ++   + + +
Sbjct: 121 GHFLLSGDGTVMTPQGYPLQGTGGNVVIPAGTRNVLIGGDGQVIADGAVVNQIALINVDD 180

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            +        +    +    ++ DA+    + +    + + +  ++
Sbjct: 181 PQNLEKLGHNLFRPREKVAVAEGDAYLAGARLEQGFAEAANVQVVT 226



 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/192 (7%), Positives = 54/192 (28%), Gaps = 19/192 (9%)

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            + ++            +      +                 + L +     +       
Sbjct: 73  ARPRVAVSKIDFSQGSMQFTGDPLDVAINGENAFFRVTTPNGDYLTRNGHFLLS------ 126

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLI---NHYCDSFNKNFIFDPVAGINTNVTLLE 402
            + + +   G   +    NV   AG  +++   +    +         +  ++    L +
Sbjct: 127 GDGTVMTPQGYPLQGTGGNVVIPAGTRNVLIGGDGQVIADGAVVNQIALINVDDPQNLEK 186

Query: 403 YARNSI---GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
              N       +     D++            + + ++    V +  E+  +I+V++ + 
Sbjct: 187 LGHNLFRPREKVAVAEGDAYLAGA-------RLEQGFAEAANVQVVTEMVNMIEVQRQFE 239

Query: 460 ISNKLIMFTDKM 471
              K++  +D +
Sbjct: 240 AYQKVMQSSDSL 251


>gi|138896905|ref|YP_001127358.1| flagellar basal-body rod protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268418|gb|ABO68613.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 345

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
           +L     A +      ++   +  N+ NA+   Y 
Sbjct: 70  MLRGLYTAASGMLAQQRRVDWLTNNLANAETPGYK 104



 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 47/194 (24%), Gaps = 13/194 (6%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +         L+      DP  G    +      D  +    +              
Sbjct: 159 GDIKETGLSTDVALVDGQVPVDPTTGERGTLFFAVENDQGETRYTRNGHFTLSPDDYLTT 218

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                    +G  ++           G     N         F  +P   +     L   
Sbjct: 219 QDGWYVLDGNGERIAIPSESFTVRDDGTITAENRTIARLGVVFAANPKTVVKEGNGL--- 275

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                      RS    L      V   + + +     V+++  ++ L+   +++  + K
Sbjct: 276 ----------FRSTDGPLPQAPGNVTYMVKQGFIERSNVDIERTMTDLLAAYRAFEANQK 325

Query: 464 LIMFTDKMLQTLLE 477
           +I   D+ L   + 
Sbjct: 326 IIQAYDRSLDKAVN 339


>gi|32477363|ref|NP_870357.1| FlgF [Rhodopirellula baltica SH 1]
 gi|32447914|emb|CAD77434.1| FlgF [Rhodopirellula baltica SH 1]
 gi|327537336|gb|EGF24069.1| Flagellar basal-body rod FlgF [Rhodopirellula baltica WH47]
          Length = 273

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/172 (8%), Positives = 33/172 (19%), Gaps = 23/172 (13%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PEN 49
           S+      +       + +   I  N+ N D   +    T+                   
Sbjct: 23  SMPYGVYLSAAGAQAQNHRLQQISHNLANVDTPGFKPSQTILQARFSELIEEGMVPPGLG 82

Query: 50  -----VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                   VT + E        +                   K+        +       
Sbjct: 83  GADDIGGGVTIQPEQTQFGVGAIRTTGRETDFA------LHDKKSFFVLQRGDEQLLTRA 136

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
                       N   D +        +   +   T   E    +A   +++
Sbjct: 137 GDFMFDSTGTMVNSGGDPVLGKGGRPIQIDPRRPFTVGSEGTITQAGETQQL 188



 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 9/181 (4%)

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
               +     F    I+    +    + +        R +   L   G         + N
Sbjct: 90  GVTIQPEQTQFGVGAIRTTGRETDFALHDKKSFFVLQRGDEQLLTRAGDFMFDSTGTMVN 149

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
             G P L                V    T     E  +  +         ++      + 
Sbjct: 150 SGGDPVLGKGGRPIQIDPRRPFTVGSEGTITQAGETQQLMLAQPASYGDLANVGGNLFRP 209

Query: 428 VFN---------HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           +           ++         V+    +  +I+  ++Y  + ++I   D +L +L+  
Sbjct: 210 LAEFSLVPDSDRNVVAGSLEQSAVSPTGTMMEMIETSRAYEANIQMIKNQDSVLGSLIGR 269

Query: 479 V 479
           V
Sbjct: 270 V 270


>gi|57238273|ref|YP_178646.1| flagellar basal body rod protein FlgC [Campylobacter jejuni
          RM1221]
 gi|57167077|gb|AAW35856.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          RM1221]
 gi|315057945|gb|ADT72274.1| Flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni S3]
          Length = 164

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDKLLNERINKDNNFLKYENPLND 77


>gi|256003243|ref|ZP_05428235.1| protein of unknown function DUF1078 domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281418479|ref|ZP_06249498.1| fagellar hook-basal body protein [Clostridium thermocellum JW20]
 gi|255992934|gb|EEU03024.1| protein of unknown function DUF1078 domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281407563|gb|EFB37822.1| fagellar hook-basal body protein [Clostridium thermocellum JW20]
 gi|316939268|gb|ADU73302.1| flagellar hook-basal body protein [Clostridium thermocellum DSM
           1313]
          Length = 259

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 5/185 (2%), Positives = 29/185 (15%), Gaps = 21/185 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     +       S+Q   +  N+ N +   + +   +                    
Sbjct: 1   MIRGLYTSGWSMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPDMLVRRINDSRSASN 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                                    L    + +               +   +       
Sbjct: 61  PSGRLGNVQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNGEYTEYY 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                   +           ++                +    + +      + +    +
Sbjct: 121 TRDGSFALNAYGQLVTKEGYLVMGQNGVITLNSENFSVSDDGTIIQDGEAVARLLIRNFT 180

Query: 162 NLRRF 166
           +    
Sbjct: 181 DTTTL 185



 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 10/195 (5%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               N + E+         +K     +            +             T   +  
Sbjct: 68  VQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNGEYTEYYTRDGSFA 127

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNVTLLE 402
             +    +   G +       +   +    + +      +   +   +        TL +
Sbjct: 128 LNAYGQLVTKEGYLVMGQNGVITLNSENFSVSDDGTIIQDGEAVARLLIRNFTDTTTLRK 187

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N +   E  +    D           + + Y     VN   E+  +I + +SY  + 
Sbjct: 188 VGSNLVQRTENTQEQPFD---------GVVRQGYLEQSNVNSINEMINMITIMRSYEANQ 238

Query: 463 KLIMFTDKMLQTLLE 477
           K++   D  L+  + 
Sbjct: 239 KILQAQDGTLEKAVN 253


>gi|254470324|ref|ZP_05083728.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062]
 gi|211960635|gb|EEA95831.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062]
          Length = 136

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTIS 46
          M  +     A +     + +   I  NI NA           Y R+    + S
Sbjct: 1  MDFIKSMFIAASGLKAQTGRMRVIAENIANADSTGQTPGEDPYRRKVPTFSSS 53



 Score = 40.0 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E++ + +  +SY  +  ++  +  M+Q  L+ ++
Sbjct: 96  NVNTLVEMADMQEATRSYEANLNVVKSSRSMMQKTLDILR 135


>gi|170722894|ref|YP_001750582.1| flagellar basal body rod protein FlgC [Pseudomonas putida W619]
 gi|169760897|gb|ACA74213.1| flagellar basal-body rod protein FlgC [Pseudomonas putida W619]
          Length = 147

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +   + +N     
Sbjct: 1  MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGG 60

Query: 55 QRSENKN 61
           +S  ++
Sbjct: 61 SQSLFED 67



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVL 143


>gi|182418329|ref|ZP_02949624.1| flagellar hook protein FlgE [Clostridium butyricum 5521]
 gi|237666973|ref|ZP_04526958.1| flagellar basal body rod protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377711|gb|EDT75255.1| flagellar hook protein FlgE [Clostridium butyricum 5521]
 gi|237658172|gb|EEP55727.1| flagellar basal body rod protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 255

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 66/242 (27%), Gaps = 10/242 (4%)

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
            N    ++ +     D         S   KG         +              +  + 
Sbjct: 23  SNDLVNSTTTGYKGTDIGFKDLMTESLDRKGNPIVNKNAVNGTGVRIGTNYANNKQGNLL 82

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           +   K  +A + +    L   DG           I     +            + G    
Sbjct: 83  NTGLKTDLAIDGKGYFALQDPDGTISYTRDGNFKIDSNGSLVTASGVKVYVQYEPGFSEG 142

Query: 360 KFLWNVKNLAGYP-DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
              ++  N+A      I+   D         PV     +   +    N   ++  + +  
Sbjct: 143 DPAFDSDNIAIDGQGGISMNIDGNVALVGSIPVFTAIGDKGFVPKGNNM--FVPSDDAQI 200

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                        I + +     V+  E  S +I  ++++ +S+K I   D +  +++  
Sbjct: 201 TLSDDY------DIRQGFLEASNVDAAEVFSDVILTQRAFQLSSKAITTADDIW-SMINS 253

Query: 479 VK 480
           ++
Sbjct: 254 MR 255



 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/203 (7%), Positives = 41/203 (20%), Gaps = 23/203 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           +  VF   ++      ++   +  ++ N+    Y   D                      
Sbjct: 1   MFNVFATGKSGMTAYQEKMDYLSNDLVNSTTTGYKGTDIGFKDLMTESLDRKGNPIVNKN 60

Query: 49  NVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
            V     R       +K   L             + + AL++                  
Sbjct: 61  AVNGTGVRIGTNYANNKQGNLLNTGLKTDLAIDGKGYFALQD------PDGTISYTRDGN 114

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
            +          S   +     +           S       +      I+  ++ +   
Sbjct: 115 FKIDSNGSLVTASGVKVY-VQYEPGFSEGDPAFDSDNIAIDGQGGISMNIDGNVALVGSI 173

Query: 167 LSELTVVNDAIKFKTASKHDAHD 189
                + +     K  +     D
Sbjct: 174 PVFTAIGDKGFVPKGNNMFVPSD 196


>gi|303240291|ref|ZP_07326810.1| flagellar basal-body rod protein FlgB [Acetivibrio cellulolyticus
          CD2]
 gi|302592201|gb|EFL61930.1| flagellar basal-body rod protein FlgB [Acetivibrio cellulolyticus
          CD2]
          Length = 137

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            +  + +   I +NI N D   Y R+      
Sbjct: 15 SLDATATRNEVIAQNIANVDTPGYKRKTVSFEE 47


>gi|188579923|ref|YP_001923368.1| flagellar basal body rod protein [Methylobacterium populi BJ001]
 gi|179343421|gb|ACB78833.1| flagellar basal body rod protein [Methylobacterium populi BJ001]
          Length = 242

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/158 (5%), Positives = 33/158 (20%), Gaps = 1/158 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +      ++  +   N+ N     +   +   +            +     
Sbjct: 1   MQSSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSELLARSNRGEV-AFVGPG 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            + +  A          L         +       ++      +L        + +    
Sbjct: 60  KNTLSRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGGMP 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
           +            Q    +      I    ++   L +
Sbjct: 120 VVDPGGGPLLLDPQAGPPTIGRDGSIHQGVNQVGALGV 157


>gi|256830177|ref|YP_003158905.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579353|gb|ACU90489.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum
           DSM 4028]
          Length = 258

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/206 (6%), Positives = 36/206 (17%), Gaps = 24/206 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           +      A         +  SI  N+ N +   +         +                
Sbjct: 1   MQDSSYSAVFGALTQQHRLDSIANNLANVNTTGFKSEKLAFRDTFRRYAHDMVDPNTTLT 60

Query: 49  ------NVTVVTQRSENKNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                    ++ Q   ++ + D     + +  + +        F  ++            
Sbjct: 61  DKVPWPQANLLAQPRISEAVIDMSQGPMKSTGNPLDLAIAGDGFFRVQTPEGEFMTRQGV 120

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
                              +   L                +   E+         E    
Sbjct: 121 YHLSAEGFVVDAHGNQLLGAGGPLQVPEGGAVLVDADGGFSVNGELIDTIELVRVEDPRA 180

Query: 160 ISNL-RRFLSELTVVNDAIKFKTASK 184
           +  +    L      +        S 
Sbjct: 181 LEKVGNSLLRIRPGADAQAIPAEDST 206



 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 18/37 (48%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           + + + +     VN+  E+  +I+  +++    K+I 
Sbjct: 205 STVEQGFLEAANVNVVSEMVNMIEAMRAFEAYQKMIS 241


>gi|242278483|ref|YP_002990612.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM
           2638]
 gi|242121377|gb|ACS79073.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM
           2638]
          Length = 255

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/145 (6%), Positives = 28/145 (19%), Gaps = 21/145 (14%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQ 55
           S+ +    A +       +      N+ N +   + R +     +               
Sbjct: 4   SIFSALFGAMS----NEHRIDISANNLANVNTTGFKRDNCAFQDTFIRFAHDYVADAKPY 59

Query: 56  RSENKNMFDKVLHAH---------SSAIGQQRLLQ--SFEALKEMMSADDHYNNSPTHYI 104
             +   + +  + A           S    Q+           +          +     
Sbjct: 60  LRDKDQLPEAKIMARPRLSEEVIDMSQGSFQKTGNPLDLAIRGDGFFKVQKNGETFLTRN 119

Query: 105 SKLRDSLESYSKNLSEDILGKTVID 129
                S E          +     +
Sbjct: 120 GVFTLSSEGTLVTEQGYPVMANGGE 144



 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 28/50 (56%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +++ Y     V +  E+  +I+ ++S+ +  K+I  TD++ Q +++ V
Sbjct: 201 GEVAQGYIEKSNVEVVNEMVAMIECQRSFEMYQKMITTTDQLDQKVIQQV 250


>gi|255023253|ref|ZP_05295239.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-208]
          Length = 243

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 26/114 (22%), Gaps = 2/114 (1%)

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
                                 +     +   Y D          VA  +    L++   
Sbjct: 121 GTNQVFSPTSXGKGAATVKDYAVTDAGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGN 180

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
               ++    S      +  Q     IS S      V+L  E   L+  +  + 
Sbjct: 181 G--EYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQ 232


>gi|125975103|ref|YP_001039013.1| protein of unknown function DUF1078-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|125715328|gb|ABN53820.1| protein of unknown function DUF1078-like protein [Clostridium
           thermocellum ATCC 27405]
          Length = 259

 Score = 47.3 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 60/227 (26%), Gaps = 20/227 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     +       S+Q   +  N+ N +   + +   +    P+    +  R  N + 
Sbjct: 1   MIRGLYTSGWSMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPD----MLVRRINDS- 55

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMM-----SADDHYNNSPTHYISKLRDSLESYSKN 117
                 + S+  G+   +Q    + E+            +N+    IS    +  + +  
Sbjct: 56  -----RSASNPSGRLGNVQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVP 110

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
              +   +    +    +  +          +       +  +  L      ++     I
Sbjct: 111 GGNEEYTEYYTRDGSFALNAYGQLVT-----KEGYLVMGQNGVITLNSENFSVSDDGTII 165

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG 224
           +   A              L +  S ++  +   +      V     
Sbjct: 166 QDGEAVARLLIRNFTDTTTLRKVGSNLVQRTENTQEQPFDGVVRQGY 212



 Score = 46.2 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 10/195 (5%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
               N + E+         +K     +            +             T   +  
Sbjct: 68  VQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNEEYTEYYTRDGSFA 127

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNVTLLE 402
             +    +   G +       +   +    + +      +   +   +        TL +
Sbjct: 128 LNAYGQLVTKEGYLVMGQNGVITLNSENFSVSDDGTIIQDGEAVARLLIRNFTDTTTLRK 187

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
              N +   E  +    D           + + Y     VN   E+  +I + +SY  + 
Sbjct: 188 VGSNLVQRTENTQEQPFD---------GVVRQGYLEQSNVNSINEMINMITIMRSYEANQ 238

Query: 463 KLIMFTDKMLQTLLE 477
           K++   D  L+  + 
Sbjct: 239 KILQAQDGTLEKAVN 253


>gi|46578927|ref|YP_009735.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603472|ref|YP_967872.1| hypothetical protein Dvul_2429 [Desulfovibrio vulgaris DP4]
 gi|46448339|gb|AAS94994.1| flagellar basal-body rod protein, putative [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563701|gb|ABM29445.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris DP4]
 gi|311232785|gb|ADP85639.1| flagellar basal-body rod protein FlgF [Desulfovibrio vulgaris RCH1]
          Length = 260

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 65/245 (26%), Gaps = 5/245 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           LF  +  +     + +      +N    D +              ++ +  +R   +   
Sbjct: 9   LFGALTTEHRLNNIANNLANVNTNGYKRDVLAFKDTMALFAHDEIMEPMANVRSKKLFPE 68

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              +      +  +   +      S+ +      +G   +     +  +           
Sbjct: 69  PLHVARPRIAVARTDFSQGSFHYTSDPLDLAISGNGFFKVRTPEGEFYTRNGHFRQTSDG 128

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
               ++    +S+    N+          +        +     V  ++    L +   N
Sbjct: 129 QLVTMQGWPVLSEGGDINLPQGKNLQVASDGRIAVDGVDVGQLQVVTVSDLEGLEKLGGN 188

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
                     +              +S+ Y  T  V +  E+  +I+ ++ +    K++ 
Sbjct: 189 LY-----RLREGSTAGEVPVGPDVIVSQGYIETSNVEVVNEMVNMIETQRQFEAYQKVMQ 243

Query: 467 FTDKM 471
            +D +
Sbjct: 244 TSDTV 248


>gi|328947992|ref|YP_004365329.1| flagellar basal-body rod protein FlgC [Treponema succinifaciens
          DSM 2489]
 gi|328448316|gb|AEB14032.1| flagellar basal-body rod protein FlgC [Treponema succinifaciens
          DSM 2489]
          Length = 153

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT 44
          M L    N A    +    +   I  NI NA          Y ++  +  
Sbjct: 1  MGLFTSINIAATGMSVERLRTDVISNNIANATTTRTQEGGAYRKQSVIVE 50



 Score = 43.9 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           ++ Y     VN+  E+  +I   ++Y  ++ +I  + +M  + LE 
Sbjct: 105 NKGYVEYPNVNIVNEMVNMISANRAYEANSSVIQGSKEMFASALEI 150


>gi|302874587|ref|YP_003843220.1| flagellar basal-body rod protein FlgC [Clostridium cellulovorans
          743B]
 gi|307690802|ref|ZP_07633248.1| flagellar basal body rod protein FlgC [Clostridium cellulovorans
          743B]
 gi|302577444|gb|ADL51456.1| flagellar basal-body rod protein FlgC [Clostridium cellulovorans
          743B]
          Length = 143

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M +      + +  +    +   +  NI N +         Y R+  M   +
Sbjct: 1  MGVFDSMRISSSGLSAERLRMDIVSSNIANVNTTRTEDGGPYKRKIGMFQEN 52


>gi|300311350|ref|YP_003775442.1| flagellar basal-body rod protein [Herbaspirillum seropedicae
          SmR1]
 gi|300074135|gb|ADJ63534.1| Flagellar basal-body rod protein [Herbaspirillum seropedicae
          SmR1]
          Length = 134

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKNYVRRDTMTTISPENVTVV 53
          MSL  +FN A +  +  SQ+  +   NI NAD          Y  +  +    P      
Sbjct: 1  MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTP-YKAKQVVFQAIPVGGVKD 59

Query: 54 TQRSENKNMFDK 65
          +       + D+
Sbjct: 60 SGVKVAAVVEDQ 71



 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             Y     VN  EE+  +I   ++Y  + + +     ML
Sbjct: 88  NGYVAMPNVNPVEEMVNMISASRAYQTNVETMNTAKAML 126


>gi|16126302|ref|NP_420866.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15]
 gi|221235079|ref|YP_002517515.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus
           NA1000]
 gi|13637950|sp|Q06171|FLGF_CAUCR RecName: Full=Flagellar basal-body rod protein flgF
 gi|13423542|gb|AAK24034.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15]
 gi|220964251|gb|ACL95607.1| flagellar basal-body rod protein flgF [Caulobacter crescentus
           NA1000]
          Length = 245

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/138 (7%), Positives = 25/138 (18%), Gaps = 17/138 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR----DTMTT------ISPENVTV 52
           +        +      ++   +  NI NA+   +        T              V  
Sbjct: 1   MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V      +N     +               F  ++                  +   + E
Sbjct: 61  VMDTGVARNFTQGPMTKTGGDYDLAINGMGFFKVQ-------ANGGERYTRDGRFTTNPE 113

Query: 113 SYSKNLSEDILGKTVIDN 130
                 +   +       
Sbjct: 114 GILVTQAGAPVLDDGGGQ 131



 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/167 (7%), Positives = 37/167 (22%), Gaps = 9/167 (5%)

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            +        G+ +          ++    +                   +         
Sbjct: 70  FTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGG 129

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
            +   + + L       +              +   +   T  +   N           +
Sbjct: 130 GQITIDPR-LGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLY--------RN 180

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
                   V    I +       V    E++ LI+++++Y    K++
Sbjct: 181 TTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMM 227


>gi|294508678|ref|YP_003572737.1| flagellar basal-body rod protein [Salinibacter ruber M8]
 gi|294345007|emb|CBH25785.1| flagellar basal-body rod protein [Salinibacter ruber M8]
          Length = 260

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +             + +    T  V+   EL+ +I++++ +    K I  TD +L
Sbjct: 191 SGASFAAGDAQPQAAENPVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGVL 250



 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/123 (7%), Positives = 23/123 (18%), Gaps = 3/123 (2%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           F  A    +    Q   +  N+ NA    Y +     T +            +    ++ 
Sbjct: 24  FQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTEALNERLTKDGSPISDRRLEQA 82

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLSEDILG 124
                 ++ +           E                         +   +      + 
Sbjct: 83  NDLSGGSLKETGNPLDVALGDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLRTPEGREVM 142

Query: 125 KTV 127
              
Sbjct: 143 GEG 145


>gi|223040442|ref|ZP_03610716.1| flagellar basal-body rod protein FlgC [Campylobacter rectus
          RM3267]
 gi|222878292|gb|EEF13399.1| flagellar basal-body rod protein FlgC [Campylobacter rectus
          RM3267]
          Length = 165

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 1  MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          MS   + F+ +    +    +   I  NI NA+     +   Y RR+ +    
Sbjct: 1  MSNYLSDFDISGYGLSAQRFRMNVISSNIANANTVRTAEGGPYRRREVIFKAV 53


>gi|291288380|ref|YP_003505196.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM
          12809]
 gi|290885540|gb|ADD69240.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM
          12809]
          Length = 252

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 25/68 (36%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
          ++     A +      ++   I  N+ N +   + +   + +    N +         + 
Sbjct: 1  MINGLYTATSGMAMQQRRMDIISSNLANLNTVGHKKEVGVFSEYIANASETPDDIIRNSD 60

Query: 63 FDKVLHAH 70
          ++K++++ 
Sbjct: 61 YNKMINST 68



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +   Y     VN  EE+  +I+  + +   +K+I   D++    + 
Sbjct: 201 LMTGYLEGSNVNPVEEMVKMIEASRGFETYSKIITTFDEIDSKAVN 246


>gi|226327748|ref|ZP_03803266.1| hypothetical protein PROPEN_01621 [Proteus penneri ATCC 35198]
 gi|225203452|gb|EEG85806.1| hypothetical protein PROPEN_01621 [Proteus penneri ATCC 35198]
          Length = 134

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT-ISPENVTVV 53
          MSL ++F+ + +  +  SQ+      N+ NAD+        Y  +  +    +P    V 
Sbjct: 1  MSLFSIFDISGSALSAQSQRLNVSASNMANADSVAGPDGEPYRAKQVVFQVNAPAGQEVG 60

Query: 54 TQR 56
            R
Sbjct: 61 GVR 63



 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V++  E+   I   +SY  + +++     ++Q  L
Sbjct: 95  NVDVVGEMINTISASRSYQANVEVMNTAKSLMQKTL 130


>gi|57167572|ref|ZP_00366712.1| flagellar basal-body rod protein FlgC [Campylobacter coli RM2228]
 gi|305433078|ref|ZP_07402234.1| flagellar basal-body rod protein FlgC [Campylobacter coli JV20]
 gi|57020694|gb|EAL57358.1| flagellar basal-body rod protein FlgC [Campylobacter coli RM2228]
 gi|304443779|gb|EFM36436.1| flagellar basal-body rod protein FlgC [Campylobacter coli JV20]
          Length = 164

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDKLLNEQINKDNNFLKYENPLND 77


>gi|320107041|ref|YP_004182631.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4]
 gi|319925562|gb|ADV82637.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4]
          Length = 249

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/169 (7%), Positives = 31/169 (18%), Gaps = 7/169 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-------VTVVTQ 55
           + +    A N     +Q   +   N+ N +   +  +                   V   
Sbjct: 1   MDSGLYAAYNGLLARTQALDTAANNLSNTNTVGFRAQRDYFRGVLAGMPPGDLESQVGDA 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
            +    +    L      I                 A    + +          + +   
Sbjct: 61  VNSFGILGGNTLDLSQGEITATGNPLDLALDGSGFFAVQTTHGTRYTRDGGFLRAADGTL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           +    D +                        +       I  ++  L 
Sbjct: 121 ETRRGDGVLDATGKKIIVPSGEVQVGGDGTISVLTAEGSAIAGKLGILN 169


>gi|253573516|ref|ZP_04850859.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. oral
          taxon 786 str. D14]
 gi|251847044|gb|EES75049.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. oral
          taxon 786 str. D14]
          Length = 149

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 10/54 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTT 44
          M++   F  + +       +   I  NI NA+             Y R+  +  
Sbjct: 1  MNISDSFGISSSALTAQRLRMDVISSNIANAETTRAKIVDGKAVPYRRKTVVMA 54


>gi|24459279|gb|AAL86632.1| FlgG [Vibrio fischeri ES114]
          Length = 43

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 14/43 (32%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +      ++   +      A+I  N+ NA    + +   +   
Sbjct: 1  MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFED 43


>gi|242278628|ref|YP_002990757.1| flagellar basal-body rod protein FlgC [Desulfovibrio salexigens
          DSM 2638]
 gi|242121522|gb|ACS79218.1| flagellar basal-body rod protein FlgC [Desulfovibrio salexigens
          DSM 2638]
          Length = 147

 Score = 47.3 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M+     +   +      +    +  N+ NA      +   Y R+      SP
Sbjct: 1  MNFFTALDIGASGLKAQREYLNVVSMNMANAKTTRTAEGGPYRRKSVSMESSP 53



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           N+ EE+  +I + +SY  + + +    +M    L
Sbjct: 108 NVVEEMVNMITISRSYEANAQAVDSAKRMFNRAL 141


>gi|229592132|ref|YP_002874251.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens
          SBW25]
 gi|229363998|emb|CAY51548.1| putative flagellar basal-body rod protein [Pseudomonas
          fluorescens SBW25]
          Length = 147

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +     +      
Sbjct: 1  MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG 60

Query: 55 QRSENKN 61
            S  ++
Sbjct: 61 SDSLFQD 67



 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143


>gi|89902478|ref|YP_524949.1| flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118]
 gi|89347215|gb|ABD71418.1| Flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118]
          Length = 246

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 30/140 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N A+ + A +  N+ N     +    +     P      + R      
Sbjct: 1   MDRLIYTAMSGANAAAHRQAVLSNNLANVSTNGFRAELSTFRAVPVRGDGASTRVMAIEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +    SA    R L +        +                  S E      S   
Sbjct: 61  TAGYVDTPGSAQRTGRGLDAMTTGNAWFAVQGLDGTESYTRSGSFEVSPEGTLVTNSGLT 120

Query: 123 LGKTVIDNAEEVVQNFNTSA 142
           +                T  
Sbjct: 121 VLGDGGAPISIPTGGEVTIG 140


>gi|23100412|ref|NP_693879.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831]
 gi|22778645|dbj|BAC14913.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831]
          Length = 269

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 8/127 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTISPENVTVVT 54
           +L     A +      +Q  S+  NI NA+   Y    T            +  +  + T
Sbjct: 1   MLRGLYTAASGMITQQRQQESLSNNIANANTPGYKADQTTIRAFPELLLQQTGSSSQIPT 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +        + +   ++ +  Q  + +F       +            +      L   
Sbjct: 61  SQGGMNFPISQTIGPINTGVYVQETVPNFAQGDVQETGLSTDVAIIQGQVPDENGFLFFS 120

Query: 115 SKNLSED 121
            +N + +
Sbjct: 121 VQNENGE 127


>gi|301168115|emb|CBW27701.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ]
          Length = 146

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48
          M LL     + +      ++ ASI  NI NA      +   Y R++ +    P 
Sbjct: 1  MDLLTSLKISSSGLAANKKRMASISSNIANAQTTRTAEGGPYRRKEVVFGSEPA 54


>gi|325567534|ref|ZP_08144201.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158967|gb|EGC71113.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           ATCC 12755]
          Length = 158

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 24/91 (26%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           +   N ++Q+   I  NI N +   Y  +  +     +     +            +   
Sbjct: 47  KTAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAVTEASVSQVKPK 106

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +      +  +   +   +   D   N   
Sbjct: 107 ITENATTSIKDNGNNVDLEVEMLDQAANGLY 137


>gi|310659663|ref|YP_003937384.1| flagellar basal body rod protein [Clostridium sticklandii DSM 519]
 gi|308826441|emb|CBH22479.1| putative Flagellar basal body rod protein [Clostridium sticklandii]
          Length = 372

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/374 (8%), Positives = 97/374 (25%), Gaps = 15/374 (4%)

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
                 + +R   +      S     +T     + +V    +   ++       +  +  
Sbjct: 4   GIYTATNGMRTDSKRIDVITSNIANSQTTAFKKDVLVT--ESFPEQLMVKLNGVENNLRP 61

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
               +          ND+I     +      +    D       +   I+          
Sbjct: 62  TRQLVNVDPPADFQTNDSIVSIEITS----GYFRMEDRHGIGYHKSAKITRDEEGYLRTA 117

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           +  SD  T        +     N  +    +  +  +G++ +  Q  A     + A +  
Sbjct: 118 LRDSDSNT-HAKFGAYLLDVNGNPISAPDGAITLLPNGILQAGGQDVARVITAVNAQVIG 176

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
             +   +    +    +  +        +A   +    +      +   ++         
Sbjct: 177 TMNGGALADRSMINFNQGNLDPTENPLHVAIEGKGFFKILDMQDNQIKYSRNGGFSINPE 236

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
            +   Y  N         +S     +  ++  + +++        +      V   NT  
Sbjct: 237 GILVDYSGNVVLSASDNEISVPEGASKIDIDKFGNIVATVDGEPEEIDTLGVVNIANTES 296

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            + +              ++             + + Y     V++  E++ +I + + Y
Sbjct: 297 MIKQGESYLTMADGIEADEAEFD--------GQVLQGYLEGSNVDIISEMAEMINLLRGY 348

Query: 459 NISNKLIMFTDKML 472
               K+I   D ++
Sbjct: 349 ESGQKVIRSYDDIM 362



 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 90/321 (28%), Gaps = 16/321 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A N     S++   I  NI N+    + +   +T   PE + V     EN   
Sbjct: 1   MFRGIYTATNGMRTDSKRIDVITSNIANSQTTAFKKDVLVTESFPEQLMVKLNGVENNLR 60

Query: 63  FDKVLHAHSSAIGQQRL--------LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             + L         Q             +  +++      H +   T        +    
Sbjct: 61  PTRQLVNVDPPADFQTNDSIVSIEITSGYFRMEDRHGIGYHKSAKITRDEEGYLRTALRD 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           S + +    G  ++D     +   + +   +      A  +    +          T+  
Sbjct: 121 SDSNTHAKFGAYLLDVNGNPISAPDGAITLLPNGILQAGGQDVARVITAVNAQVIGTMNG 180

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT------LF 228
            A+  ++    +  +     + L   I        +   +N +    + G +      L 
Sbjct: 181 GALADRSMINFNQGNLDPTENPLHVAIEGKGFFKILDMQDNQIKYSRNGGFSINPEGILV 240

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           +     +     N  +V   ++ I ID  G +V++  G       +  +       +   
Sbjct: 241 DYSGNVVLSASDNEISVPEGASKIDIDKFGNIVATVDGEPEEIDTLGVVNIANTESMIKQ 300

Query: 287 QNQLDEMARVLIGSFSEKDPI 307
                 MA  +    +E D  
Sbjct: 301 GESYLTMADGIEADEAEFDGQ 321


>gi|294140182|ref|YP_003556160.1| flagellar basal-body rod protein FlgC [Shewanella violacea DSS12]
 gi|293326651|dbj|BAJ01382.1| flagellar basal-body rod protein FlgC [Shewanella violacea DSS12]
          Length = 138

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN A +  +  S +  +   NI NAD
Sbjct: 1  MSLFNIFNVAGSGMSAQSIRLNTTASNIANAD 32



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVAEAAKSMLQQTL 134


>gi|144245|gb|AAA23042.1| hook protein [Caulobacter vibrioides]
          Length = 52

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
          MS+ +      +     S   A+I  NI N +   + R  +  +    +  
Sbjct: 1  MSINSAMLAGVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTSGN 51


>gi|15596275|ref|NP_249769.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa
          PAO1]
 gi|107100523|ref|ZP_01364441.1| hypothetical protein PaerPA_01001548 [Pseudomonas aeruginosa
          PACS2]
 gi|116049007|ref|YP_792191.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|152984084|ref|YP_001349652.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa
          PA7]
 gi|218892958|ref|YP_002441827.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa
          LESB58]
 gi|254234214|ref|ZP_04927537.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          C3719]
 gi|254239436|ref|ZP_04932758.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          2192]
 gi|296390558|ref|ZP_06880033.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa
          PAb1]
 gi|313106033|ref|ZP_07792292.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          39016]
 gi|9946994|gb|AAG04467.1|AE004539_9 flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          PAO1]
 gi|115584228|gb|ABJ10243.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126166145|gb|EAZ51656.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          C3719]
 gi|126192814|gb|EAZ56877.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          2192]
 gi|150959242|gb|ABR81267.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          PA7]
 gi|218773186|emb|CAW28998.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          LESB58]
 gi|310878794|gb|EFQ37388.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa
          39016]
          Length = 146

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  S +  ++  NI NA+  +      Y  R  + +   +     +
Sbjct: 1  MSLASVFNIAGSGMSAQSTRLNTVASNIANAETVSSSVDKTYRARHPVFSTMFQQAQGDS 60

Query: 55 QRSENKN 61
                 
Sbjct: 61 GSLFADQ 67



 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 22/36 (61%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +++    +M+Q +L
Sbjct: 107 NVNVVEEMADMISASRAFQTNAEMMNTAKQMMQKVL 142


>gi|260886628|ref|ZP_05897891.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC
          35185]
 gi|260863771|gb|EEX78271.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC
          35185]
          Length = 142

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              +  Q     A+ +   I  NI N +  N+ + + +    
Sbjct: 13 NRALDVMQRGMGAANLRQEVISHNIANVNTPNFKKSNVVFEDL 55


>gi|269792948|ref|YP_003317852.1| flagellar basal-body rod protein FlgC [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269100583|gb|ACZ19570.1| flagellar basal-body rod protein FlgC [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 139

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 16/73 (21%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTT---------- 44
          M +    + A +          +I  N+ N +     +   YVRR  +            
Sbjct: 1  MKVFRSVDVAGSALTAHRVWMDAISSNLANVNTTRTPEGGPYVRRVPIFQERLMAAMKDG 60

Query: 45 ISPENVTVVTQRS 57
           +   V VV    
Sbjct: 61 STSSGVKVVAIER 73



 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E++ ++   ++Y  +  ++     M  + ++ ++
Sbjct: 99  NVNVVREMADMMVASRAYEANLTVVETGKAMWNSAIDIMR 138


>gi|239826611|ref|YP_002949235.1| flagellar basal body rod protein FlgC [Geobacillus sp. WCH70]
 gi|239806904|gb|ACS23969.1| flagellar basal-body rod protein FlgC [Geobacillus sp. WCH70]
          Length = 150

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+    +   +       +   I  N+ N D  
Sbjct: 1  MSIFQSLDITASALTAQRLRMDVISSNMANVDTT 34


>gi|27464953|gb|AAN63050.1| flagellar component FlgF [Vibrio vulnificus]
          Length = 193

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGLPTRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        +  + + +  +             L+       
Sbjct: 60  ERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGL------TRNGNLKVDQNGLL 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 SNASG 118


>gi|148546704|ref|YP_001266806.1| flagellar basal body rod protein FlgC [Pseudomonas putida F1]
 gi|148510762|gb|ABQ77622.1| flagellar basal-body rod protein FlgC [Pseudomonas putida F1]
          Length = 147

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +   + +N    +
Sbjct: 1  MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGS 60

Query: 55 QRSENKN 61
           +S  ++
Sbjct: 61 SQSLFED 67



 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVL 143


>gi|85859195|ref|YP_461397.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB]
 gi|85722286|gb|ABC77229.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB]
          Length = 255

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/154 (7%), Positives = 29/154 (18%), Gaps = 3/154 (1%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M    + +         ++       NI N     +        +     +   +     
Sbjct: 18  MRTYGIADVGNACLRTMAK-LDCSANNIANVSTPGFKVEFLNYLMRDSGRSSNDKAPSYD 76

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +  +     S A+ +         L E                     +++      S 
Sbjct: 77  ELLTRDY--SSGALQRTDNPLEVALLGEGFFIIQTAKGVAYTRRGDFTLNMKRELVTKSG 134

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           D +                  +  V        +
Sbjct: 135 DPVLGKTGTIVLNGEDVRIDESGNVHIGENQVGQ 168


>gi|121596115|ref|YP_988011.1| flagellar basal-body rod protein FlgC [Acidovorax sp. JS42]
 gi|222112270|ref|YP_002554534.1| flagellar basal-body rod protein flgc [Acidovorax ebreus TPSY]
 gi|120608195|gb|ABM43935.1| flagellar basal-body rod protein FlgC [Acidovorax sp. JS42]
 gi|221731714|gb|ACM34534.1| flagellar basal-body rod protein FlgC [Acidovorax ebreus TPSY]
          Length = 134

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++FN + +  +  SQ+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSMFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPESAA 60

Query: 55 QRSENK 60
              + 
Sbjct: 61 GVRVSS 66



 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 2/133 (1%)

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           S  S     GS        +  +A     ++       + +    V      +     A 
Sbjct: 2   SMFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPESAAG 61

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
             +  ++++      +H  +  + +   E Y     VN  EE+  +I   +SY  + +++
Sbjct: 62  VRVSSIQESDQPGRRVHDPANPMADA--EGYVTHSNVNAVEEMVNMISASRSYQNNVEVM 119

Query: 466 MFTDKMLQTLLEG 478
                +L   L+ 
Sbjct: 120 NTAKTLLLKTLQM 132


>gi|322379367|ref|ZP_08053738.1| flagellar basal body rod protein FlgC [Helicobacter suis HS1]
 gi|322380862|ref|ZP_08054952.1| flagellar basal body rod protein FlgC [Helicobacter suis HS5]
 gi|321146713|gb|EFX41523.1| flagellar basal body rod protein FlgC [Helicobacter suis HS5]
 gi|321148185|gb|EFX42714.1| flagellar basal body rod protein FlgC [Helicobacter suis HS1]
          Length = 165

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 1  MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M +  + F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 1  MRMFLSSFDISGYGLSAQRVRANLISSNIANANTTRTDEGGPYRRQEAVFKS 52


>gi|116619479|ref|YP_821635.1| flagellar basal-body rod protein FlgC [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116222641|gb|ABJ81350.1| flagellar basal-body rod protein FlgC [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 144

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          MSL ++ +   +  +    +   +V N+ NA+     +   Y R+D +   +       +
Sbjct: 1  MSLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFAS 60

Query: 55 Q 55
           
Sbjct: 61 V 61


>gi|293605001|ref|ZP_06687397.1| flagellar basal-body rod protein FlgC [Achromobacter piechaudii
          ATCC 43553]
 gi|292816606|gb|EFF75691.1| flagellar basal-body rod protein FlgC [Achromobacter piechaudii
          ATCC 43553]
          Length = 139

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL++F+ A +  +  SQ+      N+ NA          Y  R  +  ++P     + 
Sbjct: 1  MSLLSIFDIAGSALSAQSQRMNVTASNLANADSVVGPDGQPYRARQVVFQVNPAAGQAMG 60

Query: 55 QR 56
          Q 
Sbjct: 61 QE 62



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + Y +   V+   E   +I   +SY  + +++     ++Q  L
Sbjct: 92  QGYISMPNVDPVAETVNMIAASRSYQANVEVLNTAKSLMQKTL 134


>gi|284041507|ref|YP_003391847.1| flagellar basal-body rod protein FlgC [Conexibacter woesei DSM
          14684]
 gi|283945728|gb|ADB48472.1| flagellar basal-body rod protein FlgC [Conexibacter woesei DSM
          14684]
          Length = 149

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPE 48
          M L    + A +       +      N+ NA          Y R++ +   S  
Sbjct: 1  MGLFDAIDIAGSGLTAERLRMDVTAENLANAQTTRAADGGPYQRKEVVLQQSGG 54



 Score = 36.9 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 26/121 (21%), Gaps = 8/121 (6%)

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQV 427
                           K  +     G + +  L                +   +      
Sbjct: 29  ANAQTTRAADGGPYQRKEVVLQQSGGSSFSTMLTGAIGGVRASEASKGVEVAGIVEDQTA 88

Query: 428 VFNHIS--------ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
                           Y     VN   E+  LI   +SY  +   +    +M    LE +
Sbjct: 89  QRQVYDPGHPDADPRGYVAMPNVNPVTEMVDLISSSRSYEANVTAMQSAKQMFTKTLELL 148

Query: 480 K 480
           +
Sbjct: 149 R 149


>gi|322435953|ref|YP_004218165.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9]
 gi|321163680|gb|ADW69385.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9]
          Length = 251

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/162 (6%), Positives = 33/162 (20%), Gaps = 8/162 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------ISPENVTVVT 54
           + +    A       +Q   +   N+ NA    +  +    +           +   V  
Sbjct: 1   MDSGLYAAYTGLLARTQALDTAANNLANASTNGFRAQRDSFSGVLASGLAAGQQGSQVGV 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +    +           +                 A    +            S +  
Sbjct: 61  GINSYGVLGGSSADQSQGPMVTTSNPLDVAINGTGFFAIRTAHGVRYTRDGAFTLSAQGQ 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
            +  + + +  T +            S      ++  A   +
Sbjct: 121 LQTGAGEPVLNTAMAPITLPSGEVQISGDGTVAVQTAAGSGV 162


>gi|86356306|ref|YP_468198.1| flagellar basal body rod protein FlgF [Rhizobium etli CFN 42]
 gi|86280408|gb|ABC89471.1| flagellar basal-body rod protein [Rhizobium etli CFN 42]
          Length = 244

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 39/150 (26%), Gaps = 8/150 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           + +    + +      ++  +I  N+ N +   +   +              N  V    
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 57  SENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             N  + ++   L    + +       ++ AL          +   T   +    S+  Y
Sbjct: 61  QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIRETGELVSIRGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
               +     +      E  V +     + 
Sbjct: 121 PVLDAGGAPIQLDTKAGEPAVGSDGIIYQG 150


>gi|26991079|ref|NP_746504.1| flagellar basal body rod protein FlgC [Pseudomonas putida KT2440]
 gi|24986114|gb|AAN69968.1|AE016635_4 flagellar basal-body rod protein FlgC [Pseudomonas putida KT2440]
 gi|313497759|gb|ADR59125.1| FlgC [Pseudomonas putida BIRD-1]
          Length = 147

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +   + +N    +
Sbjct: 1  MSLSSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGS 60

Query: 55 QRSENKN 61
           +S  ++
Sbjct: 61 SQSLFED 67



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVL 143


>gi|118589943|ref|ZP_01547347.1| flagellar basal body rod protein [Stappia aggregata IAM 12614]
 gi|118437440|gb|EAV44077.1| flagellar basal body rod protein [Stappia aggregata IAM 12614]
          Length = 243

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/221 (8%), Positives = 57/221 (25%), Gaps = 7/221 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    A +     S +  ++ RN+ N +   Y   +               +      
Sbjct: 1   MESALYVALSAQVALSNRLETVARNVANMNTAGYRADEVKFAELVS--KAGQDKVSFSTG 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSED 121
            +K +     ++ +           E   A    N + +     +L+   +   + L+  
Sbjct: 59  GEKYISRQYGSLNKTDNPLDLAVEGEAWFAIRDANGNLSYTRDGRLQIGNDGTLRTLTG- 117

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
              + ++    + +     +   +     +  +     I  +  FL          +   
Sbjct: 118 ---QQILGAGGQPISLDPDAGTPLITQSGEISQNDVGIIGQVGLFLIPDDAQLTRAENSA 174

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222
                    +   D    +   + G +         ++  S
Sbjct: 175 VIPDKPVIPVQTYDTNGVRQGYVEGSNINPVREMTKMIMIS 215



 Score = 36.9 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 22/46 (47%)

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                N + + Y     +N   E++ +I + +++  + K+I  +++
Sbjct: 185 QTYDTNGVRQGYVEGSNINPVREMTKMIMISRAFESATKMIDTSNE 230


>gi|1870712|gb|AAB48836.1| FlgF [Sinorhizobium meliloti]
          Length = 240

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 57/211 (27%), Gaps = 5/211 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR--SENK 60
           +      A +      ++  ++  NI N++   +   +        +         SE +
Sbjct: 1   MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGE 60

Query: 61  NMFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   A    SA+       ++ ++          +   T   +    +++ Y    
Sbjct: 61  EFLSTKTGALRTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKGYPVLD 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAR-EVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           +     +      E  V       +  VQ       +    +        S +       
Sbjct: 121 AGGPPIQLNGGAGEIAVGADGAIHQNGVQTCLLGLYEADFSKGFMRYDNSSVMPAAQPNR 180

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           + +           +     +Q++S++I I+
Sbjct: 181 RDRFDVGVMQGFLEESNVNGIQEMSQLIMIT 211


>gi|162147479|ref|YP_001601940.1| flagellar basal-body rod protein flgF [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786056|emb|CAP55638.1| putative flagellar basal-body rod protein flgF [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 254

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 43/190 (22%), Gaps = 16/190 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSE 58
             A +  +  S+       N+ NA+   +     + +                      +
Sbjct: 13  YIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQKDVHGLPGDKEEVYTQD 72

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                D++      A+ Q   L  F    E   A             +     +    + 
Sbjct: 73  RSTYQDRL----QGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIVDG 128

Query: 119 SEDILGKTVIDNAEEVVQNFN---TSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           S + L     +N     ++      S   +            + + N    + E   +  
Sbjct: 129 SGNPLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGYLLR 188

Query: 176 AIKFKTASKH 185
                    +
Sbjct: 189 PTTPTRNVAN 198


>gi|211639036|emb|CAR67650.1| flagellar hook protein flge [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
          Length = 72

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV 53
           F++A +  N A+     I  NI NA    +               V 
Sbjct: 2  AFSQAVSGLNAAAANLDVIGNNIANAATYGFKSSSAAFADIFAGSQVG 49


>gi|148258452|ref|YP_001243037.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp.
           BTAi1]
 gi|146410625|gb|ABQ39131.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp.
           BTAi1]
          Length = 246

 Score = 46.9 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/119 (6%), Positives = 29/119 (24%), Gaps = 13/119 (10%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------------ENVTVVTQ 55
            + +      ++      N+ N+    Y  +                       +++V  
Sbjct: 8   ISLSRLMALQRRLDVAANNVANSQTTGYRAKQLAFQEYLKPDKPPEIGEKPERPLSLVDA 67

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                +       +  + +       ++ A++         + S +        +LE  
Sbjct: 68  ALPFTSSASGAFRSTGNPLDLAINGNAYFAIQTSQGERYTRDGSFSLDAKGRLVTLEGL 126


>gi|319764537|ref|YP_004128474.1| flagellar basal-body rod protein flgc [Alicycliphilus
          denitrificans BC]
 gi|330826753|ref|YP_004390056.1| flagellar basal-body rod protein FlgC [Alicycliphilus
          denitrificans K601]
 gi|317119098|gb|ADV01587.1| flagellar basal-body rod protein FlgC [Alicycliphilus
          denitrificans BC]
 gi|329312125|gb|AEB86540.1| flagellar basal-body rod protein FlgC [Alicycliphilus
          denitrificans K601]
          Length = 134

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++FN + +  +  SQ+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSMFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPDSSA 60

Query: 55 QRSEN 59
              +
Sbjct: 61 GVRVS 65


>gi|23016761|ref|ZP_00056514.1| COG1558: Flagellar basal body rod protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 138

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E+  + + ++SY  + ++I  +  M+   ++ +K
Sbjct: 99  NVNPLIEMMDMREAQRSYEANLQVIQTSRTMMDRTMDLLK 138



 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 1  MSLLAVFN---KAQNICNNASQQFASIVRNIENADN-----KN--YVRRDTMT 43
          M +  + N    A++     SQ+   I  N+ NAD+     +   Y R+    
Sbjct: 1  MVMDPLMNSSKIAKSGLKVQSQRLRVISENLANADSLAQTPEGLPYQRKTVTF 53


>gi|229826300|ref|ZP_04452369.1| hypothetical protein GCWU000182_01672 [Abiotrophia defectiva ATCC
          49176]
 gi|229789170|gb|EEP25284.1| hypothetical protein GCWU000182_01672 [Abiotrophia defectiva ATCC
          49176]
          Length = 147

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          MS+    + +         +   I +NI N +         Y R++ + T 
Sbjct: 1  MSIFGAMDISATGMTAQQLRTDVIAQNIANINTTRDQNGNVYRRKNVVFTE 51


>gi|302037602|ref|YP_003797924.1| flagellar basal-body rod protein FlgC [Candidatus Nitrospira
          defluvii]
 gi|300605666|emb|CBK41999.1| Flagellar basal-body rod protein FlgC [Candidatus Nitrospira
          defluvii]
          Length = 149

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-----DNKN-YVRRDTMTTISP 47
          M L      + +  +    +   I  N+ NA          Y RRD +   +P
Sbjct: 1  MELTDSLAVSVSALDAHRHRLNVIASNLANAQSTKTSTGGPYRRRDVVFQAAP 53



 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+ EE+  +I   ++Y  + + I  T  M    LE  +
Sbjct: 110 NVNVMEEMVNMIGASRAYEANVQAINATRTMWNRALEIGR 149


>gi|295697723|ref|YP_003590961.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912]
 gi|295413325|gb|ADG07817.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912]
          Length = 265

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 80/266 (30%), Gaps = 26/266 (9%)

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
           ++ +  +  +M         L  +    +++              + +   V ++ + S 
Sbjct: 18  VNAMANDAANMNTTGYKSEDLAFSDLLAVHYAPGVRIPAPDTPPGLPVGSGVRAAARVSD 77

Query: 267 VPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDL 326
             +G ++   +  D         +      +  +      ++ +      L  ADG   L
Sbjct: 78  WSQGPLQETGRKLDVAWEGEGFFVVSGPEGMRYTRDGSFQVSVDPAGQATLVTADGHVVL 137

Query: 327 DNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNF 386
           D          + ++         +   G ++        ++A    ++  +     K  
Sbjct: 138 DEYGAPIDLTGVDLSTL------AIGPDGRITGSVAGTPTDIAVLGRVVFDHPQRLIKAG 191

Query: 387 IFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
                AG    +T  + A                        F  + + Y     V L +
Sbjct: 192 NNLYDAGTEVPLTPADIADPL--------------------RFGRLRQGYLEASNVELTD 231

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKML 472
            ++ L++ E+ Y +S + ++  D+M+
Sbjct: 232 VMTKLMEAERLYALSARAVLTADQMM 257



 Score = 43.9 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/168 (7%), Positives = 33/168 (19%), Gaps = 19/168 (11%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS--------- 57
                +  + AS    ++  +  N +   Y   D   +           R          
Sbjct: 4   LWTGASGMSAASHWVNAMANDAANMNTTGYKSEDLAFSDLLAVHYAPGVRIPAPDTPPGL 63

Query: 58  ---ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                     +V       + +           E                          
Sbjct: 64  PVGSGVRAAARVSDWSQGPLQETGRKLDVAWEGEGFFVVSGPEGMRYTRDGSF-----QV 118

Query: 115 SKNLSEDILGKTVIDN--AEEVVQNFNTSAREVQKIRADADKEIELEI 160
           S + +      T   +   +E     + +  ++  +    D  I   +
Sbjct: 119 SVDPAGQATLVTADGHVVLDEYGAPIDLTGVDLSTLAIGPDGRITGSV 166


>gi|217977819|ref|YP_002361966.1| flagellar basal body rod protein [Methylocella silvestris BL2]
 gi|217503195|gb|ACK50604.1| flagellar basal body rod protein [Methylocella silvestris BL2]
          Length = 241

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/210 (7%), Positives = 49/210 (23%), Gaps = 12/210 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE--NVTVVTQRSENK 60
           + +    + +      ++  +I  N+ N     Y   +              V   S  +
Sbjct: 1   MQSGLYVSLSGLVALDRRLTTIAANVANQSTPGYRAEEVEFKSLLSKAGANPVAFVSNGE 60

Query: 61  NMFDKVL---HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           +   +           +        + ALK         + +      ++         +
Sbjct: 61  SFISRRGGVPIKTDGPLDVAVQGHGWLALK-------TPDGTVYTKDGRMHMEESGALVS 113

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           +    +                 +  +   I  ++ +   + I +L          N  +
Sbjct: 114 VDGFPVLDAGATPILLDPAAGPPTIAQDGMITQNSHQVGAIGIFSLDGQAKLKRYTNSGV 173

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                +  +     +       + + I  I
Sbjct: 174 MSDLPATAELDFSNNGVHQGFIEGANINPI 203


>gi|311033283|ref|ZP_07711373.1| flagellar basal-body rod protein [Bacillus sp. m3-13]
          Length = 273

 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 27/148 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTMTTISPEN 49
           +L  F  A     +  ++   +  N+ NA+   Y               +          
Sbjct: 1   MLRGFYTATAGMISQQRRMEMMSNNLSNANTPGYKADQGSLRSFPDMLLQRMEQASGTNT 60

Query: 50  VTVVT-----QRSENKNMF--------DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
            + ++      R                  L    +      L Q+      +    +  
Sbjct: 61  FSPMSNPNDPVRLSTGVYLQETKPKHTQGDLRPTGNDTDLAILNQNLPENASVYFTVEQV 120

Query: 97  NNSP-THYISKLRDSLESYSKNLSEDIL 123
           + +P            E Y    S   +
Sbjct: 121 DGTPRYTRNGNFSIDPEGYLTTNSGLYV 148


>gi|30019789|ref|NP_831420.1| flagellar basal body rod protein FlgC [Bacillus cereus ATCC
          14579]
 gi|29895334|gb|AAP08621.1| Flagellar basal-body rod protein flgC [Bacillus cereus ATCC
          14579]
          Length = 137

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMQVTSNNIVNANTPAAPGADLYERRSVVLESN 50


>gi|222100200|ref|YP_002534768.1| Flagellar basal-body rod protein FlgC [Thermotoga neapolitana DSM
          4359]
 gi|221572590|gb|ACM23402.1| Flagellar basal-body rod protein FlgC [Thermotoga neapolitana DSM
          4359]
          Length = 139

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          MS   + N +    +    +   +  NI NA+         Y R+  +   
Sbjct: 1  MSEFDIMNISATGMSAQRLRVEIVSTNIANAETTRTEMGEPYRRKVPVFAE 51



 Score = 40.4 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E+  LI  +++Y+ +      T  M+ + L+  +
Sbjct: 91  ENGYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKNMVNSALQIGR 138


>gi|168699694|ref|ZP_02731971.1| flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246]
          Length = 238

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/148 (8%), Positives = 29/148 (19%), Gaps = 16/148 (10%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQ 55
               A +    AS+Q      N+ ++    Y  R  +                ++T    
Sbjct: 1   GLYSAGSALVIASEQQEVTAHNLAHSTTPGYRERGLVFESLDRHIGHAEEPTGDITGART 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     +                    +     +  N          R   +   
Sbjct: 61  VQAYNDFRPGPIQQTGHPYDLAIGEA------DRFFVLNGPNGPLYTRNGCFRVDPQGRL 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAR 143
            + +   L     +       +    A 
Sbjct: 115 VSQAGYALQTDQGNVTIPEGTSRVVIAS 142


>gi|154687759|ref|YP_001422920.1| FlhO [Bacillus amyloliquefaciens FZB42]
 gi|154353610|gb|ABS75689.1| FlhO [Bacillus amyloliquefaciens FZB42]
          Length = 265

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/251 (8%), Positives = 71/251 (28%), Gaps = 13/251 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y                 + R+  + +
Sbjct: 1   MLKGLYTATSAMITQQRRTEMLSNNIANANTSGYKE------------DQGSIRAFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++     + IG        + LK + +            I+ + + +   ++      
Sbjct: 49  LSRIEGDKKTKIGSVNTGVYMQELKPLFTQGSLKTTDQPTDIALMENQVPKNAETNENAE 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   V   A  V  + +++    +  +   +  + L  +     +             T 
Sbjct: 109 LFYPV-QTAGGVRYSKSSTFSLNENNQLTINGNLVLSTNGQPITVDNEKFTVSENGTVTT 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A     + +  ++ +           + +++    ++    +           ++ 
Sbjct: 168 NGRPAGQIDIRMEEDVRNLKRDGNDLYSTADGSELPSAAANPQVSYSLKQGVSELSNVDV 227

Query: 243 YTVTSESNPIF 253
            +  +E    +
Sbjct: 228 TSTYTEMTEAY 238


>gi|152990358|ref|YP_001356080.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2]
 gi|151422219|dbj|BAF69723.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2]
          Length = 238

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/186 (6%), Positives = 41/186 (22%), Gaps = 2/186 (1%)

Query: 12  NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN--MFDKVLHA 69
           +  + A +Q  ++  N+ N +   +            +                + +L+ 
Sbjct: 13  SGASRAMEQLDTVTNNLANVNTTGFKEMVVKEMSQRLDENGGDSNHLFVFPRFKESILNF 72

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
               +   +    F    +        +            + E    + +   L  T   
Sbjct: 73  AQGPLKHTQNRLDFALEGKGFFIVQKGDQKFLTRNGHFLINNEGLLVDQNGHYLLDTADK 132

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                 ++      +    +  A        +     +   T         T        
Sbjct: 133 PVRLEGKSEINVTEDGSIYQNGAFVTKLQIKNYDNVTIIGDTYYEPQGNELTVDAKVRQG 192

Query: 190 FLDQRD 195
           +L+  +
Sbjct: 193 YLESSN 198


>gi|225181585|ref|ZP_03735026.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167693|gb|EEG76503.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1]
          Length = 251

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 32/137 (23%), Gaps = 13/137 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENV 50
           ++     A +     S +  +I  N+ N++   + R   +                   V
Sbjct: 1   MIRGLYTAASGMMVESTRQETITNNLANSETTGFKRDLALQRSHGEQPVVRLGDRQPFGV 60

Query: 51  TVVTQRSENKNMFDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             V       ++ D +  +    ++ +           +     +               
Sbjct: 61  RPVIGSLGVGSLIDGIHTSHEQGSLQETGRDLDVAMAGDGYFVVETEQGLRYTRNGAFSI 120

Query: 110 SLESYSKNLSEDILGKT 126
             +    N     +  T
Sbjct: 121 DADRMLVNDQGHRVMGT 137



 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                + Q V   + + +     V   +E+  ++   ++Y  + +++   D ML
Sbjct: 187 AAEGAEQQPVTGMVKQGFLEGSNVQAVQEMVQMLAAMRAYETNQRVVQAQDDML 240


>gi|188587424|ref|YP_001918969.1| protein of unknown function DUF1078 domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352111|gb|ACB86381.1| protein of unknown function DUF1078 domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 280

 Score = 46.6 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 68/245 (27%), Gaps = 7/245 (2%)

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
           RD++ +   S  + S  N     G   S    +    G++   + + ++V    Q  L E
Sbjct: 36  RDMSVKSEFSNMLISRINDPENIGPPQSPQVDNRPYIGELGTGVLLDETVKDFSQGPLKE 95

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
               L            N  +    F   G   L        +  + +          + 
Sbjct: 96  TGNTLDLGLEGDGFFTVNGPDGEEYFTRSGALTLSYDETSEEATLVTLQGDPVLGEEGII 155

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
                    +     +    D      D+         +        L  Y  N +   E
Sbjct: 156 QLSGEKDITVTENGAIYQGQDDEAELIDNL-------ALVNFENPQGLARYGDNLLEQTE 208

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           ++ +               + +    +  VN  +E++ +I   ++Y  + + I   D  L
Sbjct: 209 ESGAPQELDLDGEDFGILSVHQGKIESSNVNSVDEMTGMINALRAYESNQRAIQGHDDTL 268

Query: 473 QTLLE 477
           +  + 
Sbjct: 269 ERAVN 273



 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 4/36 (11%), Positives = 11/36 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38
          +L     + +      +       N+ N +   + R
Sbjct: 1  MLRGLYTSSSGMLTQQRVQEVKSNNMANLNTTGHKR 36


>gi|304407727|ref|ZP_07389378.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus
          YK9]
 gi|304343210|gb|EFM09053.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus
          YK9]
          Length = 288

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A        ++  ++  NI N +   Y 
Sbjct: 1  MLRGLYTAAAGLTTQQRRHDTVTNNISNINTPGYK 35



 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + + Y     V+  + +  L+   ++Y  + K++ F DK L   + 
Sbjct: 238 VKQGYYERSNVDSAQSMVDLMAALRAYEANQKVVQFYDKSLDKAVN 283


>gi|254511077|ref|ZP_05123144.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium
           KLH11]
 gi|221534788|gb|EEE37776.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium
           KLH11]
          Length = 236

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 9/138 (6%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRSE--NKNMFD 64
           Q+       +   +  NI NA+   Y ++  + +      P+N ++   R+E  N ++  
Sbjct: 11  QSGLM---NEMRMVANNIANANTTGYRQQGVVFSEFIRDMPDNPSLSLTRAEVRNTSLQQ 67

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
            VL     +         F  ++           S +        +++ +    S     
Sbjct: 68  GVLTETGGSFDFAIEGDGFFMVETPAGNRLTRAGSFSPNAEGDLVTMDGHRVLNSNGAPV 127

Query: 125 KTVIDNAEEVVQNFNTSA 142
               D A   V +  T +
Sbjct: 128 FVPPDAAAIDVGSDGTLS 145


>gi|218673219|ref|ZP_03522888.1| flagellar basal body rod protein FlgF [Rhizobium etli GR56]
          Length = 244

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61
           + +    + +      ++  +I  N+ N +   +   +                +    +
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +  L+  S  +     +  F    +   + D           +          ++   
Sbjct: 61  QGNDYLNEQSGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTIKETGELVSIRGY 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            +                    +  +     D  I      +         ++       
Sbjct: 121 PVLDAG--------GAPIQLDTKAGEPAVGTDGVIYQAGRQVGSLGLFEADISKGYLRYE 172

Query: 182 ASKHDAHD 189
            S     D
Sbjct: 173 NSGIMTTD 180


>gi|163750572|ref|ZP_02157810.1| flagellar basal-body rod protein FlgC [Shewanella benthica KT99]
 gi|161329727|gb|EDQ00716.1| flagellar basal-body rod protein FlgC [Shewanella benthica KT99]
          Length = 139

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN A +  +  S +  +   NI NAD
Sbjct: 1  MSLFNIFNVAGSGMSAQSIRLNTTASNIANAD 32



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVAEAAKSMLQQTL 134


>gi|291562042|emb|CBL40858.1| fagellar hook-basal body proteins [butyrate-producing bacterium
           SS3/4]
          Length = 263

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +  N   + D    S      + +      G ++ +E+  +I+ +++++ + K+I  +D 
Sbjct: 194 VGDNEYKAQDGMEASLKSDAVLQKGALENSGTDMAKEMVHVIECQRAFSYAVKMITTSDD 253

Query: 471 MLQTLLEGVK 480
           + +  +  ++
Sbjct: 254 I-EGTINSLR 262



 Score = 43.1 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 5/120 (4%), Positives = 23/120 (19%), Gaps = 18/120 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT--------------ISPE 48
           +   F          +++ + +  N+ N +N  +  +    +                 +
Sbjct: 1   MNMSFYTGAAGAGQFTKKLSVVSNNLANINNTGFKPKTAAFSELIHYNLNDSENAQTELQ 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
             +         +                 +  +   + +    D               
Sbjct: 61  TGSGARVERTWTDFSTAGATQTGKEYDYAIMEPNAFFMIQ----DPASGEITYTRNGHFH 116


>gi|323341368|ref|ZP_08081612.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644]
 gi|323091245|gb|EFZ33873.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644]
          Length = 234

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/165 (6%), Positives = 41/165 (24%)

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
                        L+ +        +  +        F     +    +  N        
Sbjct: 65  GNFTFGNQIDGSYLNTQSGSMHETDLKTDFAINGAGYFTVRMNNGQIGYTRNGNFTENRQ 124

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
             +               +     N   +  + N+   L+   +  +  +     + + +
Sbjct: 125 GQLVTQEGYAVLGANGQAIQANEANPNFMIVSFNNASALQNQGNTIYTSNTAGTQIRSEV 184

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            +        +  + +  LI+  + +  + K++   ++ L   + 
Sbjct: 185 VQGMLEGSNTDTAQNMVDLIQTSREFEANQKVLSTANQTLSKAVN 229


>gi|34558103|ref|NP_907918.1| flagellar basal-body rod protein FlgG [Wolinella succinogenes DSM
           1740]
 gi|34483821|emb|CAE10818.1| FLAGELLAR BASAL-BODY ROD PROTEIN FLGG [Wolinella succinogenes]
          Length = 277

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/212 (5%), Positives = 51/212 (24%), Gaps = 20/212 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VVTQ 55
           + + +  +         +   I  N+ NA+   + R D +                +  Q
Sbjct: 1   MQSGYYSSTGGIVTQFHRLDMISNNLANANTTGFKRDDVVIGDFLRLYEQQKEPLPLEDQ 60

Query: 56  RSENKNMFDKVL------------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHY 103
             E     ++ +             +       +         +      +         
Sbjct: 61  TREAAKFLNRAMDRVPSIVEEYTDRSIGGITPSENRFDFALQSENAYFMIETPEGIRYTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE-ISN 162
                 + E          +       + + +   +    E  +      + +  + + +
Sbjct: 121 DGSFTLNSEGRLVTKEGFAVLPREFVQSRQYIDIPDGVVIEADRNGNLYSRTLNNDELGD 180

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
           +    +      +  K+   +  + +++  +R
Sbjct: 181 IIPLGNIAIASFENPKYLEKTGKNLYEYPQER 212


>gi|238927421|ref|ZP_04659181.1| flagellar basal body rod protein [Selenomonas flueggei ATCC
          43531]
 gi|238884703|gb|EEQ48341.1| flagellar basal body rod protein [Selenomonas flueggei ATCC
          43531]
          Length = 139

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
           +V + +    + A+ +   +  NI N +   + R        
Sbjct: 8  TSVIDVSSRALSAANLRHEVLSNNIANVNTPYFRRSHVRFEDL 50


>gi|218461633|ref|ZP_03501724.1| flagellar basal body rod protein FlgF [Rhizobium etli Kim 5]
          Length = 244

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61
           + +    + +      ++  +I  N+ N +   +   +                +    +
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +  L+  +  +     +  F    +   A D           +          ++   
Sbjct: 61  QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRGY 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            +                    +  +     D  I      +         ++       
Sbjct: 121 PVLDAG--------GAPIQLDTKAGEPAVGTDGVIYQTGRQVGSLGLFEADISKGYLRYE 172

Query: 182 ASKHDAHD 189
            S     D
Sbjct: 173 NSGIMTTD 180


>gi|296135675|ref|YP_003642917.1| flagellar basal-body rod protein FlgC [Thiomonas intermedia K12]
 gi|294339845|emb|CAZ88208.1| Flagellar basal-body rod protein flgC (Putative proximal rod
          protein) [Thiomonas sp. 3As]
 gi|295795797|gb|ADG30587.1| flagellar basal-body rod protein FlgC [Thiomonas intermedia K12]
          Length = 138

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI---SPENVT 51
          MSL +  + A +     S +   +  N+ NA++        Y  R+ +      S   V 
Sbjct: 1  MSLFSALDVANSGLTAESYRLNVVASNLANANSAVSSNGQPYRAREVVFAAQPLSGPGVP 60

Query: 52 VVT 54
             
Sbjct: 61 AGV 63


>gi|224437870|ref|ZP_03658817.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG
          18818]
 gi|313144319|ref|ZP_07806512.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG
          18818]
 gi|313129350|gb|EFR46967.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG
          18818]
          Length = 163

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +  +I  NI NA+     +   Y RR+ + 
Sbjct: 3  LSSFDISGYGLSAQRVRVNTISSNIANANTTRTDEGGPYRRREVVF 48


>gi|21672602|ref|NP_660669.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          Sg (Schizaphis graminum)]
 gi|25008458|sp|Q8K9K8|FLGC_BUCAP RecName: Full=Flagellar basal-body rod protein flgC
 gi|21623233|gb|AAM67880.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          Sg (Schizaphis graminum)]
          Length = 136

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSLL + N A +  +  S++   I  N+ NA
Sbjct: 1  MSLLNILNIAGSAMSAQSEKINVIASNLANA 31


>gi|121997321|ref|YP_001002108.1| flagellar basal-body rod protein FlgC [Halorhodospira halophila
          SL1]
 gi|121588726|gb|ABM61306.1| flagellar basal-body rod protein FlgC [Halorhodospira halophila
          SL1]
          Length = 189

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46
          MSL+   + A    N    +  ++  N+ NA+       + Y  R  +   +
Sbjct: 1  MSLMNAIDVAGTGMNAQQLRLNTVASNLANAETVASSPEEAYRARQPVFAAA 52



 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475
             VN  EE++ +I   +S+  + +++  +   ML+TL
Sbjct: 149 SNVNTVEEMTNMISASRSFQNNVEVMNTSRDLMLETL 185


>gi|256004780|ref|ZP_05429755.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          DSM 2360]
 gi|255991230|gb|EEU01337.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          DSM 2360]
 gi|316940781|gb|ADU74815.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          DSM 1313]
          Length = 134

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           +I +NI N D   Y R+      
Sbjct: 24 EAISQNIANVDTPGYKRKTVAFEE 47


>gi|114799934|ref|YP_758986.1| flagellar basal body rod protein FlgF [Hyphomonas neptunium ATCC
           15444]
 gi|114740108|gb|ABI78233.1| flagellar basal-body rod protein FlgF [Hyphomonas neptunium ATCC
           15444]
          Length = 238

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 46/214 (21%), Gaps = 6/214 (2%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79
              +  N+ N+    Y     + T           Q      +           +     
Sbjct: 19  MQVVANNLANSSTTGYKSDRAIFTEFLVSTGDSPDQSLSMGGLGGHAFQLEQGGLNFTGG 78

Query: 80  LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFN 139
                   E     +             + S      ++  + +       A        
Sbjct: 79  RFDLAIQGEGFFMVETPQGERLTRAGHFQLSGAGQLVDMQGNPVLS-----AGGNPITIP 133

Query: 140 TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ 199
             A +V              I  +   L++  +  D+  +  A    A     +      
Sbjct: 134 DDATDVSFGEDGTISGNGQIIDQVGIMLADGQLTRDSNTYFAAEGGVAPTQDAKLVQGAL 193

Query: 200 KISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           + S +  +  + R       Y +    L +   R
Sbjct: 194 EQSNVSPVLEVSRMIEVQRAYEAGQALLEKEDQR 227


>gi|114777413|ref|ZP_01452410.1| Flagellar basal-body rod protein FlgC [Mariprofundus ferrooxydans
          PV-1]
 gi|114552195|gb|EAU54697.1| Flagellar basal-body rod protein FlgC [Mariprofundus ferrooxydans
          PV-1]
          Length = 148

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN--YVRRDTMTTIS 46
          LL+  + + +  +    +   +  NI NA     ++   Y RR  +    
Sbjct: 5  LLSSMHISASGMSAQRTRMDIVAENIANAGSTRTSEGGPYRRRQVIFQAV 54


>gi|207110390|ref|ZP_03244552.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1]
          Length = 107

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH---------MKSQVV 428
           + +   +      +     +  L +   N     E   +  +             + ++ 
Sbjct: 1   FSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLK 60

Query: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           F  I   Y  T  VN    L+ LI +++ Y+++ +     D M++ 
Sbjct: 61  FGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 106


>gi|281417194|ref|ZP_06248214.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          JW20]
 gi|281408596|gb|EFB38854.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          JW20]
          Length = 134

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           +I +NI N D   Y R+      
Sbjct: 24 EAISQNIANVDTPGYKRKTVAFEE 47


>gi|37525839|ref|NP_929183.1| flagellar basal body rod protein FlgC [Photorhabdus luminescens
          subsp. laumondii TTO1]
 gi|36785268|emb|CAE14209.1| Flagellar basal-body rod protein FlgC (Putative proximal rod
          protein) [Photorhabdus luminescens subsp. laumondii
          TTO1]
          Length = 134

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMT-TISPENVTVV 53
          MSLL++F+ A +  +  SQ+      N+ NAD+        Y  +  +    +P      
Sbjct: 1  MSLLSIFDIAGSALSAQSQRLNVSASNMANADSVAGPDGQPYRAKQVVFRVAAPAGQETG 60

Query: 54 TQRSE 58
            R  
Sbjct: 61 GVRVS 65


>gi|325295398|ref|YP_004281912.1| fagellar hook-basal body protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065846|gb|ADY73853.1| fagellar hook-basal body protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 238

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/106 (8%), Positives = 23/106 (21%), Gaps = 2/106 (1%)

Query: 20  QFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
           Q  +   NI N +   + +   + M+   P+N                 +      + + 
Sbjct: 21  QLDTAANNIANINTPGFKKLIEEEMSQHIPDNKGDANNLLIFPRFKATHIVLEQGTLQKT 80

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
                         A                 + E    +   + +
Sbjct: 81  DNPLDLALKGNGFFAVKTKTGELYTRNGHFFLNAEGKLVDSKGNPV 126


>gi|290979388|ref|XP_002672416.1| predicted protein [Naegleria gruberi]
 gi|284085992|gb|EFC39672.1| predicted protein [Naegleria gruberi]
          Length = 5213

 Score = 46.6 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 48/436 (11%), Positives = 107/436 (24%), Gaps = 24/436 (5%)

Query: 15   NNASQQFASIVRNIENAD----------NKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
                 +  +   NI N +             +    T        +      + +     
Sbjct: 1602 MVNQTKLENTKSNITNHNLTNEHTSFNETIPFSSNSTELDN--GTIYTNETNTNSTINNT 1659

Query: 65   KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                  SS   +     +F        +D+    +    IS    S  + + N  E    
Sbjct: 1660 PSNGTSSSNTTESNNGTNFVGQTNGTDSDNSTGTNTNTTISDNSTSTNNVTNNSLEVGSN 1719

Query: 125  KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
             T   +   +      + + +    ++      L I+           ++      T S 
Sbjct: 1720 STGNFSNVRLNNTELATNQSLTSNSSNFSNYTVLNITCDTCLYGTNETLDKNSTSVTNST 1779

Query: 185  HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                    Q        +     STI  N++     TS       T    I     +S T
Sbjct: 1780 EWFMGNGTQ-----SNFTSYSNESTIFSNSSVWENTTSSENYNASTSNGTILQHYNSSDT 1834

Query: 245  VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
                ++ I+I+    S N  S      + + +    + +      L         +F+  
Sbjct: 1835 YEGGNSTIWIN---TSLNVTSPDCNNSMNSSIIFNQTGLENSTGIL----SNHTFTFNTT 1887

Query: 305  DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
                 NS +    +      +           +  +N    +  +      + + +    
Sbjct: 1888 FESTTNSSSEIASWNTSFQSNNTVNGTVFSQNSTTLNTSSLNETTSSLLENATALENCPV 1947

Query: 365  VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
              N            +  + +  F+                N     E   S S++    
Sbjct: 1948 GSNCTLNNSAHKFGRELEDNSQTFNQTLNETLTNNSTNILSNFSSSSENQTSHSNNQTKH 2007

Query: 425  SQVVFNHISESYSNTV 440
                 N IS + +++ 
Sbjct: 2008 EDNSDNQISNNQTSSS 2023


>gi|289523577|ref|ZP_06440431.1| flagellar basal-body rod protein FlgB [Anaerobaculum
          hydrogeniformans ATCC BAA-1850]
 gi|289503269|gb|EFD24433.1| flagellar basal-body rod protein FlgB [Anaerobaculum
          hydrogeniformans ATCC BAA-1850]
          Length = 135

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
               S++F +I +N+ N +   Y R +     
Sbjct: 12 GMKGLSKRFEAISQNVANTNTPGYARSEVTFED 44


>gi|209549487|ref|YP_002281404.1| hypothetical protein Rleg2_1893 [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209535243|gb|ACI55178.1| protein of unknown function DUF1078 domain protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 101

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
          MS+  + N A +     + +  +I  N+ N+    Y R +T  T         T  
Sbjct: 1  MSISGITNTALSGMRAQTPRIGAIANNVANSSTSGYARLNTSLTSVASGGVQATVS 56


>gi|104782845|ref|YP_609343.1| flagellar basal body rod protein FlgC [Pseudomonas entomophila
          L48]
 gi|95111832|emb|CAK16556.1| flagellar cell-proximal portion of basal-body rod FlgC
          [Pseudomonas entomophila L48]
          Length = 147

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +   + +      
Sbjct: 1  MSLASVFNIAGSGMSAQNTRLNTVASNIANAETVSSSLDQTYRARHPVFATTFQQAQGGV 60

Query: 55 QRSENKN 61
           +S  ++
Sbjct: 61 GQSLFED 67



 Score = 40.4 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKTMMQKVL 143


>gi|168182722|ref|ZP_02617386.1| flagellar basal body rod protein [Clostridium botulinum Bf]
 gi|237796078|ref|YP_002863630.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4
           str. 657]
 gi|182674102|gb|EDT86063.1| flagellar basal body rod protein [Clostridium botulinum Bf]
 gi|229264182|gb|ACQ55215.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str.
           657]
          Length = 255

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   +                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              I             N      ++             + F  ++           +  
Sbjct: 61  IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +            A  V       D    + ++
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDANGNISLN 166

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +  +  ++   ND    K    +       Q    + + + +   +  V N    ++ T
Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226

Query: 222 S 222
            
Sbjct: 227 M 227



 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 N              VA  N   +L +  
Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDANGNISLNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQSIDETLGKTVN 249


>gi|148380596|ref|YP_001255137.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC
           3502]
 gi|153932501|ref|YP_001384883.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936688|ref|YP_001388352.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str.
           Hall]
 gi|153938096|ref|YP_001391939.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str.
           Langeland]
 gi|148290080|emb|CAL84199.1| putative flagellar basal-body rod protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152928545|gb|ABS34045.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152932602|gb|ABS38101.1| flagellar basal body rod protein [Clostridium botulinum A str.
           Hall]
 gi|152933992|gb|ABS39490.1| flagellar basal body rod protein [Clostridium botulinum F str.
           Langeland]
 gi|295319959|gb|ADG00337.1| flagellar basal body rod protein [Clostridium botulinum F str.
           230613]
 gi|322806968|emb|CBZ04538.1| flagellar basal-body rod protein FlgF [Clostridium botulinum H04402
           065]
          Length = 255

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   +                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              I             N      ++             + F  ++           +  
Sbjct: 61  IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +            A  V       D    + ++
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDASGNISLN 166

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +  +  ++   ND    K    +       Q    + + + +   +  V N    ++ T
Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226

Query: 222 S 222
            
Sbjct: 227 M 227



 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 +              VA  N   +L +  
Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQSIDETLGKTVN 249


>gi|149912833|ref|ZP_01901367.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp.
           AzwK-3b]
 gi|149813239|gb|EDM73065.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp.
           AzwK-3b]
          Length = 237

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 46/219 (21%), Gaps = 7/219 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   I  NI NA    Y     +     + V      S       + + + 
Sbjct: 12  QSGLL---REIQVIANNIANAATTGYREESLIFAEYVKRVENGPSISMATP-SARSISSL 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI---LGKTV 127
              +        F    +     +  + +          S                G   
Sbjct: 68  QGGLQPTGGTLDFAIEGDGFFLIEAADGNRLTRAGSFSLSAAGELATHDGHRVLDAGGAP 127

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
           +            +   +        +   +   +    + E   +          +   
Sbjct: 128 VFLPPNATDLRVAADGTISAEGRLIGQIGLVRPLDPNDLIREGGTLFRTDVGTKPVEGSR 187

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
                     +  I+++  +  + R       +  +  T
Sbjct: 188 ILQGFLEGSNVDPIAQVARMVEVQRAYEMGQSFLENENT 226


>gi|157376218|ref|YP_001474818.1| flagellar basal body rod protein FlgC [Shewanella sediminis
          HAW-EB3]
 gi|157318592|gb|ABV37690.1| flagellar basal-body rod protein FlgC [Shewanella sediminis
          HAW-EB3]
          Length = 138

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN A +  +  S +  +   NI NAD
Sbjct: 1  MSLFDIFNVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVAEAAKSMLQQTL 134


>gi|83944163|ref|ZP_00956619.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36]
 gi|83845030|gb|EAP82911.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36]
          Length = 259

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/212 (6%), Positives = 44/212 (20%), Gaps = 13/212 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +  +   A +     ++   +   N+ NA    Y     +    P+           +  
Sbjct: 17  MSNISYVALSQATALTRSMDTTAHNLANATTSGYKAIHPVLESVPDGSGDNAINYVRESG 76

Query: 61  ---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               + D  L    + +        + +                    +L   ++   K 
Sbjct: 77  TYLELADGPLMQTGNPMDIAVAGDGWLS-----FQLPGGETG-YSRHGRLVVDVDGQLKT 130

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--ELEISNLRRFLSELTVVND 175
                L               +           +    +   + +  +      L +   
Sbjct: 131 AGGMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPMGAG 190

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
             +    +         Q      + S +  +
Sbjct: 191 MYQLPPNAGQPQQMENPQVKQGFIEGSNVNAV 222



 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 75/262 (28%), Gaps = 8/262 (3%)

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
               +  D +   E    +I++  ++  T  + S       +  ++  G       ++++
Sbjct: 1   MYNAFFRDASAPPEDEMSNISYVALSQATALTRSMDTTAHNLANATTSGYKAIHPVLESV 60

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                     +  +       L      +     +       +++  +   +    +   
Sbjct: 61  PDGSGDNAINYVRE-SGTYLELADGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGR 119

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             + V+ Q ++       G       L +               +          V  IN
Sbjct: 120 LVVDVDGQLKTAGGMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAIN 179

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               +L                  +     Q+    + + +     VN   E++ LI ++
Sbjct: 180 EAAQMLPMGAGMY-------QLPPNAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQ 232

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           ++Y  S KL+   D + +T ++
Sbjct: 233 RAYENSVKLMGSDDDLTRTAIQ 254


>gi|187778771|ref|ZP_02995244.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC
           15579]
 gi|187772396|gb|EDU36198.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC
           15579]
          Length = 255

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 +              VA  N   +L +  
Sbjct: 129 NDSGYNVMGMNRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKM 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQAIDETLGKTVN 249



 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 53/241 (21%), Gaps = 35/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   +                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              +             N      ++             + F  ++           +  
Sbjct: 61  IKNVIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +            A  V       D    + ++
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGMNRNTG-------AREAIFVGNKTIGTDASGNISLN 166

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +  +  ++   ND    K    +       Q    + + + +   +  V N    ++ T
Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226

Query: 222 S 222
            
Sbjct: 227 M 227


>gi|78224306|ref|YP_386053.1| flagellar basal-body rod protein FlgC [Geobacter metallireducens
          GS-15]
 gi|78195561|gb|ABB33328.1| Flagellar basal-body rod protein FlgC [Geobacter metallireducens
          GS-15]
          Length = 147

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48
          M   +    + +  +    +   I  NI NA++    +   Y R+D +   +P 
Sbjct: 1  MDFFSAMQISSSALSAERTRMNLISSNIANANSTRTAEGGPYKRKDAVFAATPA 54


>gi|89098646|ref|ZP_01171528.1| flagellar basal-body rod protein C [Bacillus sp. NRRL B-14911]
 gi|89086608|gb|EAR65727.1| flagellar basal-body rod protein C [Bacillus sp. NRRL B-14911]
          Length = 149

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 27/83 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN---------YVRRDTMTT------ 44
          MS+    N   +       +   I  N+ N    +          Y R++ +        
Sbjct: 1  MSMFHSMNTTSSALTAQRLRMDVISSNMANVDSTRGKLVNGEWQPYTRKEVVMQPQEKNF 60

Query: 45 -----------ISPENVTVVTQR 56
                      +   V V   R
Sbjct: 61 SSFLNTAMNAGSAGSGVRVSEIR 83


>gi|83594174|ref|YP_427926.1| hypothetical protein Rru_A2842 [Rhodospirillum rubrum ATCC 11170]
 gi|83577088|gb|ABC23639.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 245

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 20/113 (17%), Gaps = 4/113 (3%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR----SENKNMFDKVLHAHSSAI 74
           +Q   +  N+ N +   Y    T+ +    N      R                  +  +
Sbjct: 17  RQLDVVSNNLANMNTNGYQAEQTLFSEYLMNTRDSHFRLPEKLAYTQDAGTYRDLTAGPL 76

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
                        E     +           +     E          L    
Sbjct: 77  EHTGNPLDLAINGEGYFEVEDGAGPAYTRGGRFTLDAEGKVVTADGRPLMTDA 129



 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465
           I +       VN   E++ +I+V++SY  +NKLI
Sbjct: 194 IEQGMIEKSNVNPVVEMTRMIQVQRSYEAANKLI 227


>gi|327193031|gb|EGE59943.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512]
          Length = 244

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61
           + +    + +      ++  +I  N+ N +   +   +                +    +
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +  L+  +  +     +  F    +   + D           +          ++   
Sbjct: 61  QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRGY 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            +                    +  +     D  I      +         ++       
Sbjct: 121 PVLDAG--------GAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYE 172

Query: 182 ASKHDAHD 189
            S     D
Sbjct: 173 NSGIMTTD 180


>gi|119899029|ref|YP_934242.1| flagellar basal-body rod protein FlgC [Azoarcus sp. BH72]
 gi|119671442|emb|CAL95355.1| flagellar basal-body rod protein FlgC [Azoarcus sp. BH72]
          Length = 146

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           E Y     VN+ EE+  +I   +SY  + +++     +LQ  L+ 
Sbjct: 100 EGYVEMPNVNVVEEMVNMISASRSYQNNAEVMNTAQTLLQRTLQI 144



 Score = 43.5 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVT--V 52
          MS+L VF  A +  N  S +  +   N+ NAD+        Y  +  +    P   T  V
Sbjct: 1  MSMLNVFQIAGSALNAQSLRLNTTASNLANADSVIAEDGQPYRAKQVVFAAKPVGATPPV 60

Query: 53 VTQR 56
             R
Sbjct: 61 GGVR 64


>gi|56460251|ref|YP_155532.1| flagella basal body rod protein [Idiomarina loihiensis L2TR]
 gi|56179261|gb|AAV81983.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR]
          Length = 247

 Score = 46.6 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  EE++ +I +++ Y ++ KL+   D+
Sbjct: 197 LQIGALEGSNVNSVEEMTHMIALQRQYEMNVKLMKTADE 235



 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 39/199 (19%), Gaps = 17/199 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +         A    N+ NA+   +       R                  S  +
Sbjct: 5   LWVAMSGAKENMNAVAVRANNLANANTTAFKGDLQQARAMQAFGEGLPTRVFSMTESPGQ 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +      Q + A+ +         N        L    +   KN + 
Sbjct: 65  NFASGAIQTTGRNMDVAIKDQGWIAVDD------GSGNERYTRNGSLEVGTDGLLKNSTG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
             +           +         V     +         +N    +  + +VN      
Sbjct: 119 QTVLGN-----NGPIFVPMPIDNLVIGANGNVSIRPMGAPANAMEVIDRIKLVNPPNGNM 173

Query: 181 TASKHDAHDFLDQRDVLLQ 199
                      D +     
Sbjct: 174 EKGNDGLFKLKDDQQAFAD 192


>gi|313905150|ref|ZP_07838519.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6]
 gi|313470053|gb|EFR65386.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6]
          Length = 253

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 18/128 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           +   F +  +      ++  +I  N+ N +   Y R     +                +P
Sbjct: 1   MYQGFYELTSGLITQQRKLNTISNNMANVETAGYKRDTMTVSTFQEEMLIRTGQTAKKNP 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            ++ V T  +     +         +  Q      F    +        N          
Sbjct: 61  TDLAVTTPIAAADQTYTDF---TQGSFDQTDGKYDFAISGDGFFTIQTPNGIQYTRNGAF 117

Query: 108 RDSLESYS 115
             + +   
Sbjct: 118 SVNAQGIL 125



 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 51/192 (26%), Gaps = 2/192 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                    L     +     +  D   G+ +   G +      D    +          
Sbjct: 54  QTAKKNPTDLAVTTPIAAADQTYTDFTQGSFDQTDGKYDFAISGDGFFTIQTPNGIQYTR 113

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           N  +  N   +    ++      N   +       N   D + +         +   + +
Sbjct: 114 NGAFSVNAQGILCLDNIGTVVGANGGTIR--ITNENFVVDDYGRIMSAAGDGTVYGQLRI 171

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             +        E N   S     +       +   Y      ++  +++ ++  +++   
Sbjct: 172 TGFEDTGTLHKEDNGMFSAPGGGQDLTGRTRVFNGYLEASNADMIGQMTEMMSSQRALQS 231

Query: 461 SNKLIMFTDKML 472
           + +++   D++L
Sbjct: 232 AAQMLKMYDQVL 243


>gi|284041497|ref|YP_003391837.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684]
 gi|283945718|gb|ADB48462.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684]
          Length = 232

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 42/231 (18%), Gaps = 10/231 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVVTQ 55
           +      A +       +  +I  ++ NA    Y                      V+  
Sbjct: 1   MERGLYIAASGMIAEQMRQDAIANDLANASTPGYKADRITQASFGDLLLSNSNTGQVIGP 60

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                    KV      A            + E                 +   S +   
Sbjct: 61  LGTGAYADSKVTDLRPQATRVTEEPLDLAIVGEGWFGVQTPEGVRYTRNGQFSASPQGQL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
            +     +        +   +             A+A KE +   +              
Sbjct: 121 IDQLGRPVLGPGGQPVQLDARGHVRPGSVGVFALANARKEGD---NYFTGAAGGQATGQV 177

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            I     S  D    +       +       + T + +            T
Sbjct: 178 EIGALEGSGIDPTRTMVDMIASFRAYEAGQKVITTIDDTLRRTSTQVGNAT 228



 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 19/61 (31%)

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +   D++            +        G++    +  +I   ++Y    K+I   D  
Sbjct: 157 ARKEGDNYFTGAAGGQATGQVEIGALEGSGIDPTRTMVDMIASFRAYEAGQKVITTIDDT 216

Query: 472 L 472
           L
Sbjct: 217 L 217


>gi|77460471|ref|YP_349978.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens
          Pf0-1]
 gi|77384474|gb|ABA75987.1| putative flagellar basal-body rod protein [Pseudomonas
          fluorescens Pf0-1]
          Length = 147

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +     +      
Sbjct: 1  MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG 60

Query: 55 QRSENK 60
            S  +
Sbjct: 61 SNSLFQ 66



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143


>gi|85858815|ref|YP_461017.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB]
 gi|85721906|gb|ABC76849.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB]
          Length = 143

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          M  L  F    +       +   I  N+ N    +      Y R+  + + 
Sbjct: 1  MDFLTSFRICSSGFAAQRAKMDVIASNLANVSTTSTPEGGPYKRKVAIFSS 51


>gi|220930464|ref|YP_002507373.1| hypothetical protein Ccel_3101 [Clostridium cellulolyticum H10]
 gi|220000792|gb|ACL77393.1| protein of unknown function DUF1078 domain protein [Clostridium
           cellulolyticum H10]
          Length = 265

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 63/258 (24%), Gaps = 10/258 (3%)

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             ++   L        N         T              ++  S      +   +++ 
Sbjct: 12  MLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTNPSAVVGTMELS 71

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
             V  ++              +          E     F   G+ +  +   Q       
Sbjct: 72  SDVGEVYTYYTQGQMVQTGDRYDLAIKDDNTGEVASPAFFTVGVINPQDNTVQEFYTKNG 131

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                 +N     DG +V  K          +                   +A    +  
Sbjct: 132 SFSLDANNQLVTGDGYAVLGKKGPITLKTGDFTVDSKGNIMQNGAVVDTLRIAQFADSTQ 191

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
           L +   N +       ++              + + +     VN+ +E+  +I V ++Y 
Sbjct: 192 LRKLGNNLVMNNGGEVAEFS----------GTVIQGFDEQSNVNVIDEMVDMITVMRAYE 241

Query: 460 ISNKLIMFTDKMLQTLLE 477
            + K++   D  L+  + 
Sbjct: 242 ANQKVLQAQDGTLEKAVN 259



 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/252 (7%), Positives = 55/252 (21%), Gaps = 22/252 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT----------------IS 46
           ++     +        ++   I  N+ N +   Y +   +                   +
Sbjct: 1   MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTN 60

Query: 47  PENVTVV-----TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           P  V                     +              +   +           N   
Sbjct: 61  PSAVVGTMELSSDVGEVYTYYTQGQMVQTGDRYDLAIKDDNTGEVASPAFFTVGVINPQD 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDN-AEEVVQNFNTSAREVQKIRADADKEIELEI 160
           + + +      S+S + +  ++         ++      T    V            ++ 
Sbjct: 121 NTVQEFYTKNGSFSLDANNQLVTGDGYAVLGKKGPITLKTGDFTVDSKGNIMQNGAVVDT 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             + +F     +          +  +  +F         + S +  I  +V     M  Y
Sbjct: 181 LRIAQFADSTQLRKLGNNLVMNNGGEVAEFSGTVIQGFDEQSNVNVIDEMVDMITVMRAY 240

Query: 221 TSDGTTLFETVP 232
            ++   L     
Sbjct: 241 EANQKVLQAQDG 252


>gi|323703167|ref|ZP_08114820.1| flagellar basal-body rod protein FlgC [Desulfotomaculum
          nigrificans DSM 574]
 gi|323531826|gb|EGB21712.1| flagellar basal-body rod protein FlgC [Desulfotomaculum
          nigrificans DSM 574]
          Length = 145

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 9/54 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN---------YVRRDTMTTI 45
          M L   F  + +   +   +   I  N+ N +            Y RR  +   
Sbjct: 1  MGLFDSFAISASGMTSERLRLDLIANNVANMNTAGRPNDPNNPVYRRRVPVFAE 54


>gi|308175374|ref|YP_003922079.1| flagellar basal-body rod protein [Bacillus amyloliquefaciens DSM 7]
 gi|307608238|emb|CBI44609.1| putative flagellar basal-body rod protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555348|gb|AEB25840.1| flagellar basal-body rod protein [Bacillus amyloliquefaciens TA208]
 gi|328913716|gb|AEB65312.1| putative flagellar basal-body rod protein [Bacillus
           amyloliquefaciens LL3]
          Length = 265

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 72/251 (28%), Gaps = 13/251 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y                 + R+  + +
Sbjct: 1   MLKGLYTATSAMITQQRRTEMLSNNIANANTSGYKE------------DQGSIRAFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++     + IG        + LK + +            I+ + + +   ++      
Sbjct: 49  LSRIEGDKKTKIGSVNTGVYMQELKPLFTQGSLKTTDQPTDIALMENQVPKNAETNENAE 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   V   A  V  + +++    Q  +   +  + L  +     +             T+
Sbjct: 109 LFYPV-QTAGGVRYSKSSTFSLNQNNQLTINGNLVLSTNGQPITVDNEKFTVSENGTVTS 167

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +   A     + +  ++ +           + +++    ++    +           ++ 
Sbjct: 168 NGRQAGRIDIRMEEDVRNLKRDGNDLYSTADGSELPSAAANPQVSYSLKQGVSELSNVDV 227

Query: 243 YTVTSESNPIF 253
            +  +E    +
Sbjct: 228 TSTYTEMTEAY 238


>gi|91791414|ref|YP_561065.1| flagellar basal body rod protein-like protein [Shewanella
          denitrificans OS217]
 gi|91713416|gb|ABE53342.1| Flagellar basal body rod protein-like protein [Shewanella
          denitrificans OS217]
          Length = 215

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSS 72
            N   Q  A+   N+ NA+   Y+R+ T  T    +  + TQ   +       +    +
Sbjct: 9  GINTQLQSLATTSNNVANANTPGYLRQ-TSFTQV-LDAQIQTQTQVSSKQLSGAIKQTGN 66

Query: 73 AIGQQRLLQSFEALK 87
                L +S   ++
Sbjct: 67 VYDFAVLGKSLFVVE 81


>gi|292669735|ref|ZP_06603161.1| flagellar basal-body rod protein FlgB [Selenomonas noxia ATCC
          43541]
 gi|292648532|gb|EFF66504.1| flagellar basal-body rod protein FlgB [Selenomonas noxia ATCC
          43541]
          Length = 140

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 11/41 (26%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            +        AS +   +  NI N +   + R        
Sbjct: 10 TIDIGSRAMAAASLRHEVLSNNIANVNTPYFRRSHVRFEDL 50


>gi|154250382|ref|YP_001411207.1| flagellar basal-body rod protein FlgC [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154318|gb|ABS61550.1| flagellar basal-body rod protein FlgC [Fervidobacterium nodosum
           Rt17-B1]
          Length = 138

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E+  +I  +++Y  +   I  T  M+   L+  +
Sbjct: 99  NVNIVREMVDMINAQRAYEANATAINTTKAMINAALQIGR 138



 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          S   + N +    +    +   I  NI N++         Y R+  +    
Sbjct: 3  SEFNIMNISATGLSAQRFRIEVISTNIANSETTRTENGGPYRRKVPVFQEV 53


>gi|16799765|ref|NP_470033.1| flagellar basal body rod protein FlgG [Listeria innocua Clip11262]
 gi|16413142|emb|CAC95922.1| lin0690 [Listeria innocua Clip11262]
 gi|313620081|gb|EFR91589.1| flagellar basal body rod protein FlgG [Listeria innocua FSL S4-378]
          Length = 259

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 45/218 (20%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R       SP    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNSPVARQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFITAKNGEISLSRGGQFHTD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      +  +  +  +   +    +        A+ ++ +    +         
Sbjct: 123 QFGFLRTADGANILSSTGEAIQVGQKTAIRAEANGDLYNAETNQYLGRLGTKFVSADQVD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    +  +   + E   + 
Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGNIQNGVLETSNVD 220



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +I      T  V+L  E+  L+  ++    S  ++   DK+  
Sbjct: 204 AGQGNIQNGVLETSNVDLGVEMVQLMDNQRMVQASKNVVNMFDKVYD 250


>gi|91792665|ref|YP_562316.1| flagellar basal body rod protein FlgF [Shewanella denitrificans
           OS217]
 gi|91714667|gb|ABE54593.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217]
          Length = 247

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/126 (7%), Positives = 24/126 (19%), Gaps = 12/126 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +         A    N+ NA+   +       R          +           
Sbjct: 5   LYVAMSGAKQNMSALAVRANNLANANTDGFKSDLTQARSMQAFGEGLPSRVFAMTEIATS 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     L      +        + A++          +        L+        N   
Sbjct: 65  DFKAGALKTTGRDLDIAVKGDGWIAVQ------APDGSEAYTRSGGLKFDNTGLLLNSRN 118

Query: 121 DILGKT 126
           + +   
Sbjct: 119 NPVMGN 124



 Score = 43.5 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +         VN  EE+  LI +++ Y +  K++   ++  Q     ++
Sbjct: 196 QVESGAIEASNVNPVEEMVALISIQRQYEMQVKMMKTAEETDQASSSLMR 245


>gi|117919770|ref|YP_868962.1| flagellar basal body rod protein FlgC [Shewanella sp. ANA-3]
 gi|117612102|gb|ABK47556.1| flagellar basal-body rod protein FlgC [Shewanella sp. ANA-3]
          Length = 138

 Score = 46.2 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +F+ A +  +  S +  +   NI NAD
Sbjct: 1  MSLFNIFDVAGSGMSAQSLRLNTTASNIANAD 32



 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|241203104|ref|YP_002974200.1| flagellar basal body rod protein FlgC [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240856994|gb|ACS54661.1| flagellar basal-body rod protein FlgC [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 138

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT---ISPENVTV 52
          L A    A +     S +   +  NI NA    D      Y R+             V  
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDRTNGVET 63

Query: 53 VTQ 55
          V  
Sbjct: 64 VGV 66


>gi|157961169|ref|YP_001501203.1| flagellar basal body rod protein FlgC [Shewanella pealeana ATCC
           700345]
 gi|157846169|gb|ABV86668.1| flagellar basal-body rod protein FlgC [Shewanella pealeana ATCC
           700345]
          Length = 138

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 13/107 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +FN A +  +  S +  +   NI NA              S  +    T R+ + 
Sbjct: 1   MSLFNIFNVAGSGMSAQSVRLNTTASNIANA-------------DSVSSSVGETYRARHP 47

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               ++  A       Q +        ++    +   + P       
Sbjct: 48  IFEAEMSKAQQHQSAAQSVAVKGIVESDLPLNKEFSPDHPMADTDGF 94



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTL 134


>gi|332297607|ref|YP_004439529.1| flagellar basal-body rod protein FlgC [Treponema brennaborense
          DSM 12168]
 gi|332180710|gb|AEE16398.1| flagellar basal-body rod protein FlgC [Treponema brennaborense
          DSM 12168]
          Length = 151

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M L    N A    +    +   I  NI NA   
Sbjct: 1  MGLFTSINIAATGMSVERLRTDVISDNIANASTT 34



 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  Y     VN+  E+  LI   ++Y  ++ +I  +  M  + LE  +
Sbjct: 104 NAGYVEYPNVNIVNEMVDLISASRAYEANSSVIQGSKDMFSSALEIAR 151


>gi|326319095|ref|YP_004236767.1| flagellar basal-body rod protein FlgC [Acidovorax avenae subsp.
          avenae ATCC 19860]
 gi|323375931|gb|ADX48200.1| flagellar basal-body rod protein FlgC [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 134

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++F  + +  +  +Q+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSMFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGDEGAA 60

Query: 55 QRSEN 59
              +
Sbjct: 61 GVRVS 65


>gi|188581884|ref|YP_001925329.1| flagellar basal body rod protein FlgC [Methylobacterium populi
          BJ001]
 gi|179345382|gb|ACB80794.1| flagellar basal-body rod protein FlgC [Methylobacterium populi
          BJ001]
          Length = 136

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 13/79 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTI------SP 47
          M  L     A +     S +   I  NI N    A       Y R+    T       + 
Sbjct: 1  MDFLKSLGIAASGLKAQSGRMRIIAENIANADSAAQTPGGDPYRRKIPTFTNRFDRELNA 60

Query: 48 ENVTVVTQRSENKNMFDKV 66
            V     R +      K 
Sbjct: 61 SVVEAGRVRRDPTPFRTKY 79


>gi|221069324|ref|ZP_03545429.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni
          KF-1]
 gi|264676568|ref|YP_003276474.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni
          CNB-2]
 gi|299531288|ref|ZP_07044698.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni
          S44]
 gi|220714347|gb|EED69715.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni
          KF-1]
 gi|262207080|gb|ACY31178.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni
          CNB-2]
 gi|298720695|gb|EFI61642.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni
          S44]
          Length = 134

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MS+ ++FN + +  +  SQ+   +  N+ N D         Y  R  +    P       
Sbjct: 1  MSMFSIFNISGSAVSAQSQRLNVVASNLANVDAVAGPDGSVYKARQVVFQTVPMGNDGSA 60


>gi|253990129|ref|YP_003041485.1| flagellar basal body rod protein FlgC [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|211639034|emb|CAR67648.1| flagellar basal-body rod protein flgc (putative proximal rod
          protein) [Photorhabdus asymbiotica subsp. asymbiotica
          ATCC 43949]
 gi|253781579|emb|CAQ84742.1| flagellar basal-body rod protein flgc (putative proximal rod
          protein) [Photorhabdus asymbiotica]
          Length = 134

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMT-TISPENVTVV 53
          MSLL+VF+ A +  +  SQ+      N+ NAD+        Y  +  +    +P      
Sbjct: 1  MSLLSVFDIAGSALSAQSQRLNVSASNMANADSVAGPDGQPYRAKQVVFRVAAPAGQETG 60

Query: 54 TQRSE 58
            R  
Sbjct: 61 GVRVS 65


>gi|116872071|ref|YP_848852.1| flagellar basal body rod protein FlgG [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740949|emb|CAK20069.1| flagellar basal-body rod protein, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 259

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 44/218 (20%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R       SP    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNSPVARQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFLTAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      +     +  +   +    +        AD ++ +    +         
Sbjct: 123 QFGFLRTSDGANVLSATGEAIQVGQKTSIRAEANGDLFNADTNQYLGRIGTKFVSADQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    +  +   + E   + 
Sbjct: 183 SLVKDGEGRLHVNGINTINLPAGQGNIQNGVLETSNVD 220



 Score = 37.3 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 32/122 (26%)

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G+           +     +                +  I T     + A + +   
Sbjct: 129 TSDGANVLSATGEAIQVGQKTSIRAEANGDLFNADTNQYLGRIGTKFVSADQADSLVKDG 188

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           E     +    +       +I      T  V+L  E+  L+  ++    S  ++   DK+
Sbjct: 189 EGRLHVNGINTINLPAGQGNIQNGVLETSNVDLGIEMVQLMDNQRMVQASKNVVNMFDKV 248

Query: 472 LQ 473
             
Sbjct: 249 YD 250


>gi|315648139|ref|ZP_07901240.1| flagellar basal-body rod protein FlgC [Paenibacillus vortex V453]
 gi|315276785|gb|EFU40128.1| flagellar basal-body rod protein FlgC [Paenibacillus vortex V453]
          Length = 149

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          M++   F    +       +   I  NI NA+     R       +             +
Sbjct: 1  MNISNSFGINASALTAQRLRMDVISSNIANAET---TRARIENGQAVPYRRKTVVFQPQQ 57

Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
            F+ +L A  S     + ++     ++ 
Sbjct: 58 ESFEGLLRAQMSGQDAGQGVKVAAVQEDQ 86


>gi|229096230|ref|ZP_04227203.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-29]
 gi|229102343|ref|ZP_04233051.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-28]
 gi|229115185|ref|ZP_04244595.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-3]
 gi|228668325|gb|EEL23757.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-3]
 gi|228680990|gb|EEL35159.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-28]
 gi|228687190|gb|EEL41095.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-29]
          Length = 137

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAMNASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|300870978|ref|YP_003785849.1| flagellar basal body rod protein FlgB [Brachyspira pilosicoli
          95/1000]
 gi|300688677|gb|ADK31348.1| flagellar basal body rod protein, FlgB [Brachyspira pilosicoli
          95/1000]
          Length = 142

 Score = 46.2 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 1  MSLLA------VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          MS+ A          A+ + N    +   I  NI N    N+ R D    
Sbjct: 1  MSMFADTTYAKTMTIAKKLLNVYGLRAEVIADNIANVSTPNFKRSDVTFE 50


>gi|320354315|ref|YP_004195654.1| flagellar basal-body rod protein FlgC [Desulfobulbus propionicus
          DSM 2032]
 gi|320122817|gb|ADW18363.1| flagellar basal-body rod protein FlgC [Desulfobulbus propionicus
          DSM 2032]
          Length = 145

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          M +   F+ A +     + +  +I  N+ N++  +      Y ++  +   
Sbjct: 1  MDIFTTFDIAASGLKAQTMRLNTISANLANSETTSTPEGGPYKKKSVVFQT 51


>gi|237653585|ref|YP_002889899.1| flagellar basal-body rod protein FlgC [Thauera sp. MZ1T]
 gi|237624832|gb|ACR01522.1| flagellar basal-body rod protein FlgC [Thauera sp. MZ1T]
          Length = 134

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           + Y     VN+ EE+  +I   +SY  + +++     +LQ  L+ 
Sbjct: 88  DGYVEMPNVNVVEEMVNMISASRSYQNNAEVMSTARTLLQRTLQI 132



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          MS+L VF  A +  N  S +  +   N+ NAD+        Y  +  +    P       
Sbjct: 1  MSMLNVFQIAGSALNAQSLRLNATASNLANADSVISEDGQPYRAKQVVFAARPVAGPAAV 60

Query: 55 QRSENK 60
               +
Sbjct: 61 GVQVTQ 66


>gi|323703166|ref|ZP_08114819.1| flagellar basal-body rod protein FlgB [Desulfotomaculum
          nigrificans DSM 574]
 gi|323531825|gb|EGB21711.1| flagellar basal-body rod protein FlgB [Desulfotomaculum
          nigrificans DSM 574]
          Length = 132

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 1  MSLLAV--FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M +     FN  Q   + ++ +   I  N+ N +   + +       
Sbjct: 1  MDIFNSPMFNLLQRGLDASALRQRVIANNVANLNTPGFKKSYVSFEE 47


>gi|114797235|ref|YP_759001.1| flagellar basal-body rod protein [Hyphomonas neptunium ATCC
          15444]
 gi|114737409|gb|ABI75534.1| flagellar basal-body rod protein [Hyphomonas neptunium ATCC
          15444]
          Length = 128

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRR--DTMTTISPENVTVVTQRSENKNMFDKV 66
          A       S++      NI NAD   Y R+      +        +  R +      K 
Sbjct: 11 AVAGMELQSRRMGVTAENISNADTPGYKRKLLMVEQSQLSSGEQFMASRVQLDEAEAKR 69


>gi|218506433|ref|ZP_03504311.1| flagellar basal body rod protein FlgC [Rhizobium etli Brasil 5]
          Length = 102

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTIS---PENVTV 52
          L A    A +     S +   +  NI NA    D      Y R+             V  
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDHVSGVET 63

Query: 53 VTQ 55
          V  
Sbjct: 64 VNV 66


>gi|229542504|ref|ZP_04431564.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1]
 gi|229326924|gb|EEN92599.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1]
          Length = 262

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/262 (9%), Positives = 54/262 (20%), Gaps = 25/262 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP---------ENVTVV 53
           +L     A +      ++   +  N+ NAD   Y    +     P            T  
Sbjct: 1   MLRGLYTAASGMIAQQRKTDLLANNLSNADTPGYKTDQSSIRSFPKMLLSYMDKNGTTGE 60

Query: 54  TQRSENK------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
             +S                     L    +        Q+          DD   +   
Sbjct: 61  VVKSVGSLATGVYMQETLPLFKQGDLEETGNRTDLAIFDQASPEGSLFFRIDDGNGHEVY 120

Query: 102 HYISKLRDSLESYSKNLSE-DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                   + E Y    S   +L +               +A  V +    A        
Sbjct: 121 TRNGNFTVNPEGYLTTASGHYVLDENGGRIRTGGTDFSVDAAGAVTENGRYAGTIGLAYA 180

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
            N  +       +              + F  ++  L    S  +  +  + +       
Sbjct: 181 QNPAQLEKTGDGLYTLANNGALPAAGQNGFQIKQGFLE---SSNVDETKTMTDMMSAYRS 237

Query: 221 TSDGTTLFETVPRDINFEKMNS 242
                 + +     +     + 
Sbjct: 238 FEANQKVLQAYDASLGKAVNDV 259



 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/257 (9%), Positives = 59/257 (22%), Gaps = 5/257 (1%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
            L                T    +N    D     ++Q S     K+      ++     
Sbjct: 1   MLRGLYTAASGMIAQQRKTDLLANNLSNADTPGYKTDQSSIRSFPKMLLSYMDKNGTTGE 60

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               +  +A  +    +      G+ E                +             +  
Sbjct: 61  VVKSVGSLATGVYMQETLPLFKQGDLEETGNRTDLAIFDQASPEGSLFFRIDDGNGHEVY 120

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           +                     L      I      F+ +             T+     
Sbjct: 121 TRNGNFTVNPEGYLTTASGHYVLDENGGRIRTGGTDFSVDAAGAVTENGRYAGTIGLAYA 180

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFN-----HISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +   LEK     + L     +         I + +  +  V+  + ++ ++   +S+  
Sbjct: 181 QNPAQLEKTGDGLYTLANNGALPAAGQNGFQIKQGFLESSNVDETKTMTDMMSAYRSFEA 240

Query: 461 SNKLIMFTDKMLQTLLE 477
           + K++   D  L   + 
Sbjct: 241 NQKVLQAYDASLGKAVN 257


>gi|78043872|ref|YP_359837.1| flagellar basal-body rod protein FlgB [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995987|gb|ABB14886.1| flagellar basal-body rod protein FlgB [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 136

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            + A+ +  +I  NI N +   Y +   +   
Sbjct: 15 GIDAATIRQQAIAHNIANVNTPGYRKEVVVFEE 47


>gi|302342345|ref|YP_003806874.1| flagellar basal-body rod protein FlgC [Desulfarculus baarsii DSM
          2075]
 gi|301638958|gb|ADK84280.1| flagellar basal-body rod protein FlgC [Desulfarculus baarsii DSM
          2075]
          Length = 147

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M  +     + +  +    +   I +N+ NA+     +   Y RR T+ +  P
Sbjct: 1  MDFVTSMEISASGLSAQRTRLNIISQNLANAETTRTAEGGPYRRRVTVMSAQP 53


>gi|190890357|ref|YP_001976899.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
 gi|190695636|gb|ACE89721.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
          Length = 244

 Score = 46.2 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/188 (5%), Positives = 39/188 (20%), Gaps = 9/188 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61
           + +    + +      ++  +I  N+ N +   +   +                +    +
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +  L+  +  +     +  F    +   + D           +          ++   
Sbjct: 61  QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRGY 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            +                    +  +     D  I      +         ++       
Sbjct: 121 PILDAG--------GAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYE 172

Query: 182 ASKHDAHD 189
            S     D
Sbjct: 173 NSGIMTTD 180


>gi|209545588|ref|YP_002277817.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533265|gb|ACI53202.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 247

 Score = 46.2 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 43/190 (22%), Gaps = 16/190 (8%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSE 58
             A +  +  S+       N+ NA+   +     + +                      +
Sbjct: 6   YIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQKDVHGLPGDKEEVYTQD 65

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                D++      A+ Q   L  F    E   A             +     +    + 
Sbjct: 66  RSTYQDRL----QGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIVDG 121

Query: 119 SEDILGKTVIDNAEEVVQNFN---TSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           S + L     +N     ++      S   +            + + N    + E   +  
Sbjct: 122 SGNPLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGYLLR 181

Query: 176 AIKFKTASKH 185
                    +
Sbjct: 182 PTTPTRNVAN 191


>gi|192290682|ref|YP_001991287.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1]
 gi|192284431|gb|ACF00812.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1]
          Length = 244

 Score = 46.2 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 32/139 (23%), Gaps = 4/139 (2%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSENKNMFD 64
              +      QQ  ++ RN+ N +   + R         T + E   + +    +     
Sbjct: 7   IGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKRSLVAVT 66

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                 + ++           L++                       +     LS D++ 
Sbjct: 67  GYTDFSAGSLQLTGNSTDAAVLEDGFFVVRTSRGDRYTRNGAFTLDKQGRLVTLSGDLVL 126

Query: 125 KTVIDNAEEVVQNFNTSAR 143
                    +     +   
Sbjct: 127 AANGTIKVPLTDLNLSIGT 145


>gi|303326604|ref|ZP_07357046.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp.
          3_1_syn3]
 gi|302862592|gb|EFL85524.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp.
          3_1_syn3]
          Length = 146

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M  L   +   +       +  +I  N+ NA          Y RR  +   +
Sbjct: 1  MDFLTALDIGASGLTADRTRINTISMNLANAKTTRTPQGGPYRRRTVVQAAT 52


>gi|301608667|ref|XP_002933905.1| PREDICTED: calmodulin-binding transcription activator 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 1698

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/358 (7%), Positives = 83/358 (23%), Gaps = 17/358 (4%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR-RFLSELTV 172
                S ++     ++  +    +  + +  +      AD      +S++    +     
Sbjct: 304 LLHQNSTEVSSTNQVEVPDTTQNSPVSISSGLNSDPDMADSPAVTGVSSMAVASVMGSLS 363

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS-----TIVRNNNDMVVYTSDGTTL 227
            N  +     +    +            +S                +      T    +L
Sbjct: 364 QNATVFMSEVTNEAVYSMSPNTGPNQHLLSSDTSAQGLVLAVSSDGHKFAFPTTGSSDSL 423

Query: 228 FETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                       +++   +S   P             +              D++    +
Sbjct: 424 SMLSANVAEELVLSTTLDSSRKIPETAMNFDPDCFLNNPKQGQTYGGGGLKEDNICSNMR 483

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
                       +   K+    ++     L          N L      ++  +    S 
Sbjct: 484 RSSSTDRSFGFNAVLAKEIKTEDTSFEQQLAKESFPSTSSNTLTLTPGSSLLPSGGGLSP 543

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-----GINTNVTLLE 402
            + L      +     +      +     H   + + +F     +       N++ +L +
Sbjct: 544 STTLEQMDFSAIDSNKDYTTSFNHAVQSPHVHQTPSPSFFLQDASKPIPLDQNSHNSLND 603

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
                +  LE     +      +      I ++       +L      L++ + +Y  
Sbjct: 604 TNSTYVNTLEIPNVKTEVSSQTASNCNGTIDQARIE-STSSL-----QLMQFQANYQA 655


>gi|167623359|ref|YP_001673653.1| flagellar basal body rod protein FlgC [Shewanella halifaxensis
           HAW-EB4]
 gi|167353381|gb|ABZ75994.1| flagellar basal-body rod protein FlgC [Shewanella halifaxensis
           HAW-EB4]
          Length = 138

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 13/107 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +FN A +  +  S +  +   NI NA              S  +    T R+ + 
Sbjct: 1   MSLFNIFNVAGSGMSAQSVRLNTTASNIANA-------------DSVSSSVGETYRARHP 47

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               ++  A         +        ++    +   + P       
Sbjct: 48  IFEAEMSKAQQHQSASASVAVKGIVESDLPLNKEFSPDHPMADTDGF 94



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTL 134


>gi|218781795|ref|YP_002433113.1| hypothetical protein Dalk_3959 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763179|gb|ACL05645.1| Putative flagellar basal body rod protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 117

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61
           ++A  N + +  N   ++F S   N  N D   Y +     + +    V   +++  + +
Sbjct: 1   MIAGINASVSALNAYGRKFQSTANNTANIDTDGYKKTRVTMSEAANGSVEAKSEKVNSPS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                L +  S + ++  +   + +   + A   Y  +   
Sbjct: 61  PIVSELTSEGSVLVEKSNVDLAQEVTNQILAARGYEANLAS 101


>gi|229166627|ref|ZP_04294379.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621]
 gi|228616881|gb|EEK73954.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621]
          Length = 259

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 49/226 (21%), Gaps = 19/226 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTT 44
           MS+            N  Q       N+ NA    +                 R D   T
Sbjct: 1   MSMNG-LYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMT 59

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                   V   + + N+    +   +S       L    A           + +     
Sbjct: 60  NIGSVDYAVVPAATHVNLVQGNIQMTNSPTDF--FLDDGAAGTSSFFVTSKNDETFLTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                + + Y +  S   +     +              +           I    +   
Sbjct: 118 GSFTLNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTV 177

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              +   +V    K    ++ +  D  +   ++   + E   +   
Sbjct: 178 DTETNARLVQRENKSFILAEGNIADLPNGTGIVKNHMLENSNVDMT 223



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 205 NGTGIVKNHMLENSNVDMTKEMADLMTNQKMIQASQRIMTSFDKIYE 251


>gi|319403959|emb|CBI77547.1| Flagellar basal-body rod protein flgC [Bartonella rochalimae ATCC
          BAA-1498]
          Length = 138

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS----- 46
          MS  L+A    A    +  S +   I  N+ NA++         Y R+      +     
Sbjct: 1  MSDRLIAAEQIATTGLSAQSTRLRVIAENLANANSTGKSPGARPYQRKTVSFEATLNPYL 60

Query: 47 -PENVTVVTQRSENKNMFDKV 66
            + V V    ++      + 
Sbjct: 61 DAQGVHVTRISTDKAPFIMRY 81


>gi|312115282|ref|YP_004012878.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220411|gb|ADP71779.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 241

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 34/129 (26%), Gaps = 5/129 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           + +    A +      ++  ++ +N+ NA+   Y   +                      
Sbjct: 1   MQSSLYVALSAQVALQKRLDTVAQNVANANTVGYRGTEMKFDSVLSAADAQMTAFVTSKD 60

Query: 61  ---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
              ++    L    + +      Q + +++         +       S +  S+  +   
Sbjct: 61  GVVSLGAGGLIKTGNPLDVALKGQGWLSVQAPAGRMYTRDGRIQLTTSGMLVSMRGHPVL 120

Query: 118 LSEDILGKT 126
            +     + 
Sbjct: 121 DAGGAPMQV 129


>gi|288573036|ref|ZP_06391393.1| flagellar basal-body rod protein FlgB [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288568777|gb|EFC90334.1| flagellar basal-body rod protein FlgB [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 131

 Score = 45.8 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 24 IVRNIENADNKNYVRRDTMTTI 45
          + +N+ NA+   Y RR+     
Sbjct: 23 VGQNLANANTPGYARREVSFED 44


>gi|57242334|ref|ZP_00370273.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis
          RM3195]
 gi|315638445|ref|ZP_07893622.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis
          JV21]
 gi|57017014|gb|EAL53796.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis
          RM3195]
 gi|315481436|gb|EFU72063.1| flagellar basal-body rod protein FlgC [Campylobacter upsaliensis
          JV21]
          Length = 164

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA      +   Y RR+ +   +        
Sbjct: 1  MAYLSDFDISGYGLSAQRFRMNVISSNIANAQTTRTAEGGPYRRREVIFKAN-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ ++  ++ +  +  L  
Sbjct: 53 ---DFDALINQQINKDNNFLKYENPLND 77


>gi|226223313|ref|YP_002757420.1| flagellar hook-basal body protein FlgG [Listeria monocytogenes
           Clip81459]
 gi|225875775|emb|CAS04478.1| Putative flagellar hook-basal body protein FlgG [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 259

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVARQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETGQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRIHVNGINTMNLPAGQGIIQNGVIETSNVD 220


>gi|251772413|gb|EES52980.1| flagellar basal body rod protein [Leptospirillum ferrodiazotrophum]
          Length = 265

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/148 (4%), Positives = 23/148 (15%), Gaps = 39/148 (26%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI------------------------- 45
            +      Q    +  N+ N +   + +   M                            
Sbjct: 9   VSGAQGQEQMMDVLSSNLANVNTPGFRKDRVMFRSYLPHREYLHRTPPDRPGFNLTPFGT 68

Query: 46  -----SPENVTV--VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
                      +             +    +  + +      + F  ++           
Sbjct: 69  FPTPWGMAGSDIPHSGVDRIYVRYEEGEFQSTGNPLDVALSGKGFLTVR-------TPGG 121

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKT 126
           +       L    +          L   
Sbjct: 122 TLLTRNGHLTVDSQGRLTTHEGHPLVGV 149


>gi|304321145|ref|YP_003854788.1| putative flagellar basal-body rod protein FlgC [Parvularcula
          bermudensis HTCC2503]
 gi|303300047|gb|ADM09646.1| putative flagellar basal-body rod protein FlgC [Parvularcula
          bermudensis HTCC2503]
          Length = 127

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          LL     A +  N  S +  ++  N+ N D   Y R+    +  
Sbjct: 5  LLTSLRIAGDGMNAQSFRMRTVNENLSNIDTPGYQRKMLTFSTG 48


>gi|212709490|ref|ZP_03317618.1| hypothetical protein PROVALCAL_00532 [Providencia alcalifaciens
          DSM 30120]
 gi|212687828|gb|EEB47356.1| hypothetical protein PROVALCAL_00532 [Providencia alcalifaciens
          DSM 30120]
          Length = 134

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          M LL++F+ + +     SQ+      N+ NA          Y  +  +  ++P+    V 
Sbjct: 1  MGLLSIFDISSSALTAQSQRLNVSASNMANAESVVGPDGEPYRAKQVVFQMAPQGRNQVG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSELIDD 70



 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V+   E+   I   +SY  + +++     +LQ  L
Sbjct: 95  NVDTVGEMINTISASRSYQANLEVMNTAKTLLQKTL 130


>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040057|gb|ACT56853.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 134

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 7/60 (11%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
          L+A  + A +     S +   I  NI NA           Y R+             V  
Sbjct: 4  LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV 63


>gi|212634349|ref|YP_002310874.1| flagellar basal body rod protein FlgF [Shewanella piezotolerans
           WP3]
 gi|212555833|gb|ACJ28287.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3]
          Length = 247

 Score = 45.8 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/129 (8%), Positives = 26/129 (20%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R                  
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAISANNLANANTDGFKADLAQARSMQAFGEGLPTRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S + +  +  +      +        + A++                   L        +
Sbjct: 61  SPSADFTNGPIKTTGRDLDIAVKGDGWIAVQ------ADDGGEAYTRSGSLSFDTTGVLR 114

Query: 117 NLSEDILGK 125
           N     L  
Sbjct: 115 NDKGTPLMG 123


>gi|326791546|ref|YP_004309367.1| flagellar basal-body rod protein FlgB [Clostridium lentocellum
          DSM 5427]
 gi|326542310|gb|ADZ84169.1| flagellar basal-body rod protein FlgB [Clostridium lentocellum
          DSM 5427]
          Length = 122

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M++ +  +      +    +   I  NI N D   Y R+D     
Sbjct: 1  MNIFSDIDLMNTAISATMLRKGIISENISNVDTPGYKRKDVRFET 45


>gi|218230982|ref|YP_002366429.1| flagellar basal body rod protein FlgC [Bacillus cereus B4264]
 gi|218158939|gb|ACK58931.1| flagellar basal-body rod protein FlgC [Bacillus cereus B4264]
          Length = 137

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|47091645|ref|ZP_00229441.1| flagellar basal-body rod protein, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|254824038|ref|ZP_05229039.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           J1-194]
 gi|254932038|ref|ZP_05265397.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           HPB2262]
 gi|47019964|gb|EAL10701.1| flagellar basal-body rod protein, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|293583591|gb|EFF95623.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           HPB2262]
 gi|293593267|gb|EFG01028.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           J1-194]
 gi|328467251|gb|EGF38331.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 1816]
 gi|328475645|gb|EGF46394.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 220]
 gi|332311107|gb|EGJ24202.1| Flagellar basal body rod protein [Listeria monocytogenes str. Scott
           A]
          Length = 259

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVARQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETGQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220


>gi|209547922|ref|YP_002279839.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533678|gb|ACI53613.1| flagellar basal body rod protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 37/150 (24%), Gaps = 8/150 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           + +    + +      ++  +I  N+ N +   +   +              N  V    
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 57  SENKNM--FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             N  +   +  L    + +       ++ +L          +   T   +    S+  Y
Sbjct: 61  QGNDYLNESNGELQHTGNMLDFAIKGDAWFSLDTPAGRVLTRDGRFTLKDTGELVSIRGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
               +     +      E  V       + 
Sbjct: 121 PVLDAGGAPIQLNSKGGEPAVGTDGIIYQG 150


>gi|127512277|ref|YP_001093474.1| flagellar basal body rod protein FlgC [Shewanella loihica PV-4]
 gi|126637572|gb|ABO23215.1| flagellar basal-body rod protein FlgC [Shewanella loihica PV-4]
          Length = 139

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN A +  +  S +  +   NI NAD
Sbjct: 1  MSLFNIFNVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVADAAKSMLQQTL 134


>gi|167639076|ref|ZP_02397349.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0193]
 gi|177650375|ref|ZP_02933342.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0174]
 gi|254734585|ref|ZP_05192297.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          Western North America USA6153]
 gi|167512866|gb|EDR88239.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0193]
 gi|172083519|gb|EDT68579.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0174]
          Length = 137

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|120598230|ref|YP_962804.1| flagellar basal body rod protein FlgC [Shewanella sp. W3-18-1]
 gi|146293692|ref|YP_001184116.1| flagellar basal body rod protein FlgC [Shewanella putrefaciens
          CN-32]
 gi|120558323|gb|ABM24250.1| flagellar basal-body rod protein FlgC [Shewanella sp. W3-18-1]
 gi|145565382|gb|ABP76317.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens
          CN-32]
 gi|319427091|gb|ADV55165.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens
          200]
          Length = 138

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL ++F+ A +  +  S +  +   NI NAD
Sbjct: 1  MSLFSIFDVAGSGMSAQSVRLNTTASNIANAD 32



 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|319406974|emb|CBI80611.1| Flagellar basal-body rod protein flgC [Bartonella sp. 1-1C]
          Length = 138

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS----- 46
          MS  L+A    A    +  S +   I  N+ NA++         Y R+      +     
Sbjct: 1  MSDRLIAAEQIATTGLSAQSTRLRVIAENLANANSTGKSPGARPYQRKTVSFEATLNPYI 60

Query: 47 -PENVTVVTQRSENKNMFDKV 66
            + V V    ++      + 
Sbjct: 61 DAQGVHVTRISTDKAPFIMRY 81


>gi|325111114|ref|YP_004272182.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM
           5305]
 gi|324971382|gb|ADY62160.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM
           5305]
          Length = 256

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 17/116 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54
           +L    ++    +  S +   I  NI NA+  ++ R   +  + P+   +          
Sbjct: 1   MLYGLYQSATGADLQSLRQDVISNNIANANTSSFKRDLAIFAVRPQQAELDGDLDDVPPP 60

Query: 55  ---------QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          +     L    +A     L + F  + +        + S T
Sbjct: 61  LQGHPGAAVVAETVTDFAQGPLQETGAAFDIALLGKGFFRVSDGQEELLSRSGSLT 116



 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + + +    GV    E+  +I+  +++  +  LI   D  L  LL+ V
Sbjct: 206 VRQGFLEQSGVRPITEMLAMIESSRAFEANMNLIQNQDNTLGQLLQAV 253


>gi|160901818|ref|YP_001567399.1| flagellar basal body rod protein [Petrotoga mobilis SJ95]
 gi|160359462|gb|ABX31076.1| flagellar basal body rod protein [Petrotoga mobilis SJ95]
          Length = 240

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 54/210 (25%), Gaps = 16/210 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVR------------RDTMTTISPENVTVV 53
               A     N+  +  SI  N+ N +   Y +              +      +   + 
Sbjct: 3   GIYNATAGMLNSFAELNSISNNLANLNTVGYKKDFNLFKSVYEKEIRSYQNAQGKGEPIG 62

Query: 54  TQRSENKNMFDKVL-HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                +  + D+V+ +     + +      F    +     +   N       +   S E
Sbjct: 63  NI--YSSVVLDEVIPNLEQGPLVETSGKLDFAIEGDGFFKIERNGNYFYTRNGEFSLSPE 120

Query: 113 SYSKN-LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           +Y      + +L +       ++   F      +       +      ++          
Sbjct: 121 NYLVTKSGDYVLDEENNPILVDLDNFFVDEEGNISGTNTRLNILNVENLNKYGENYFTGE 180

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
            +  A  F           +D  + +++ I
Sbjct: 181 ELGQAGNFNMRQGFLESSNVDALNEMIKMI 210


>gi|260438810|ref|ZP_05792626.1| flagellar basal-body rod protein FlgC [Butyrivibrio crossotus DSM
          2876]
 gi|292808799|gb|EFF68004.1| flagellar basal-body rod protein FlgC [Butyrivibrio crossotus DSM
          2876]
          Length = 145

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M++ +  N A +       +   I  NI NA+     +   Y RR+ + T 
Sbjct: 1  MAIFSGMNIAASGMTAQRLRTDIISGNIANANTTRTAEGGPYTRRNVLLTQ 51


>gi|229172391|ref|ZP_04299950.1| Flagellar basal-body rod protein FlgC [Bacillus cereus MM3]
 gi|228610862|gb|EEK68125.1| Flagellar basal-body rod protein FlgC [Bacillus cereus MM3]
          Length = 137

 Score = 45.8 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|217965220|ref|YP_002350898.1| flagellar basal body rod protein [Listeria monocytogenes HCC23]
 gi|290893977|ref|ZP_06556952.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           J2-071]
 gi|217334490|gb|ACK40284.1| flagellar basal body rod protein [Listeria monocytogenes HCC23]
 gi|290556423|gb|EFD89962.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           J2-071]
 gi|307570221|emb|CAR83400.1| flagellar basal-body rod protein, putative [Listeria monocytogenes
           L99]
          Length = 259

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETGQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220


>gi|121596118|ref|YP_988014.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42]
 gi|222112273|ref|YP_002554537.1| flagellar basal-body rod protein flgf [Acidovorax ebreus TPSY]
 gi|120608198|gb|ABM43938.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42]
 gi|221731717|gb|ACM34537.1| flagellar basal-body rod protein FlgF [Acidovorax ebreus TPSY]
          Length = 246

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 30/141 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    N A+ + A +  N+ NA    +    +     P      T R      
Sbjct: 1   MDRIIYTSMTGANAAAHRQAVLANNLANASTTGFRAEMSNFRSVPLQGGGSTTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +     A    R L +        +                + +        +   
Sbjct: 61  TSGHVDTPGPAQTTGRPLDAMAVGNAWFAVQGLDGVETYTRAGSFQVTAAGQLVTSTGMA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +       T   
Sbjct: 121 VLSDGGAPIDVPPNAEVTLGA 141


>gi|160896078|ref|YP_001561660.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1]
 gi|160361662|gb|ABX33275.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1]
          Length = 246

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 34/141 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    N A+Q+ + +  N+ NA    +    +     P   +    R      
Sbjct: 1   MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +          R L +    +   +                  S E    N +   
Sbjct: 61  TSGYVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +   ++  T   
Sbjct: 121 VLSDGGGPIDIPPESTITLGS 141


>gi|226939376|ref|YP_002794449.1| FlgC1 [Laribacter hongkongensis HLHK9]
 gi|226714302|gb|ACO73440.1| FlgC1 [Laribacter hongkongensis HLHK9]
          Length = 137

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTT 44
          MSL  V + A +     S++   +  NI N D+      + Y  R  + T
Sbjct: 1  MSLNRVLDIAGSALTAQSKRLNVVASNIANVDSAVASNGEPYKARRIVFT 50



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           EE++ +I   ++Y  + +++  T ++LQ  L  
Sbjct: 102 EEMTDMISASRAYQTNVEMMNTTKQLLQKTLSI 134


>gi|118474276|ref|YP_891712.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413502|gb|ABK81922.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 270

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/177 (7%), Positives = 36/177 (20%), Gaps = 26/177 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGAMVTQFNRLDVITNNLANVNTIGYKRDDVVIADFERIFKETRDILPLENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     V        +     L   ++ +           L +  +      
Sbjct: 61  TRDAAKFLNRTIDRVPQINEIYTDFNVGGLKMTNNPLDVAIGKSDLFLLVDTPNGVRLTK 120

Query: 98  NS-PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
           N            + E Y    +        +   +       T  ++      + +
Sbjct: 121 NGALNLDNEGYIVTKEGYRVLPNNYENQPEEVRGIQIPQDAPVTIDKDGNIYSNNEN 177


>gi|254419217|ref|ZP_05032941.1| flagellar basal-body rod protein FlgC [Brevundimonas sp. BAL3]
 gi|196185394|gb|EDX80370.1| flagellar basal-body rod protein FlgC [Brevundimonas sp. BAL3]
          Length = 128

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 11/67 (16%)

Query: 7  FNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI----SPENVTVVTQ 55
             A +       +   I  NI NA           Y R+  +           VT+   
Sbjct: 1  MAVAASALKAQQSRMRVIAENIANAQSTARTPGGEPYRRQIPVFQAREVDGATGVTLAEV 60

Query: 56 RSENKNM 62
          R +    
Sbjct: 61 RPDQGEF 67



 Score = 36.5 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+   E   + + +++Y  +  +I     M    L+ +K
Sbjct: 88  NVDTLVEAMDMREAQRAYEANLNVIETARSMDSRTLDIIK 127


>gi|121601652|ref|YP_989405.1| putative flagellar basal-body rod protein FlgF [Bartonella
           bacilliformis KC583]
 gi|120613829|gb|ABM44430.1| putative flagellar basal-body rod protein FlgF [Bartonella
           bacilliformis KC583]
          Length = 244

 Score = 45.8 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/206 (6%), Positives = 46/206 (22%), Gaps = 1/206 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61
           +        +   + +++  +I +N+ N +   +                    R    +
Sbjct: 1   MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPIAQEQGDRVFFTS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +     ++ Q        A      + +           ++  + E    +++  
Sbjct: 61  AGKGYISTERGSLEQTGNALDVAATGNSYFSMEASFGVVYTRDGRMTMTPEGMLVSVTGL 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                     +               I         + +   +         N ++    
Sbjct: 121 PFLDDGGAPIQLNPVGGAPRIGADGSIYQGNVLAGRIGLYQFQPGTQLRYGPNASVIPDR 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGI 207
           A+        D       + S + G+
Sbjct: 181 AAIQIEGGTGDGVMQGYVESSNVNGV 206


>gi|75761144|ref|ZP_00741136.1| Flagellar basal-body rod protein flgC [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|206970905|ref|ZP_03231857.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH1134]
 gi|218896677|ref|YP_002445088.1| flagellar basal-body rod protein FlgC [Bacillus cereus G9842]
 gi|228900326|ref|ZP_04064556.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL
          4222]
 gi|228920455|ref|ZP_04083800.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228952124|ref|ZP_04114219.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228958024|ref|ZP_04119760.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|229069296|ref|ZP_04202586.1| Flagellar basal-body rod protein FlgC [Bacillus cereus F65185]
 gi|229078926|ref|ZP_04211478.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock4-2]
 gi|229109201|ref|ZP_04238800.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-15]
 gi|229127070|ref|ZP_04256069.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-Cer4]
 gi|229149946|ref|ZP_04278174.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1550]
 gi|229178153|ref|ZP_04305524.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 172560W]
 gi|229189841|ref|ZP_04316852.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC
          10876]
 gi|74491372|gb|EAO54596.1| Flagellar basal-body rod protein flgC [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|206734541|gb|EDZ51711.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH1134]
 gi|218541427|gb|ACK93821.1| flagellar basal-body rod protein FlgC [Bacillus cereus G9842]
 gi|228593649|gb|EEK51457.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC
          10876]
 gi|228605283|gb|EEK62733.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 172560W]
 gi|228633627|gb|EEK90228.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1550]
 gi|228656423|gb|EEL12262.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-Cer4]
 gi|228674211|gb|EEL29456.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock1-15]
 gi|228704340|gb|EEL56774.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock4-2]
 gi|228713783|gb|EEL65668.1| Flagellar basal-body rod protein FlgC [Bacillus cereus F65185]
 gi|228801649|gb|EEM48530.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228807656|gb|EEM54180.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228839085|gb|EEM84381.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228859361|gb|EEN03791.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL
          4222]
          Length = 137

 Score = 45.8 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|239834444|ref|ZP_04682772.1| flagellar basal-body rod protein FlgC [Ochrobactrum intermedium
          LMG 3301]
 gi|239822507|gb|EEQ94076.1| flagellar basal-body rod protein FlgC [Ochrobactrum intermedium
          LMG 3301]
          Length = 140

 Score = 45.8 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 11/67 (16%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI NA +         Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTAKTADADPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQR 56
                R
Sbjct: 61 TGAAEVR 67


>gi|224498764|ref|ZP_03667113.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           Finland 1988]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 44/218 (20%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L  T  +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSTTGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVD 220


>gi|34557980|ref|NP_907795.1| flagellar basal body rod protein FlgC [Wolinella succinogenes DSM
          1740]
 gi|34483698|emb|CAE10695.1| FLAGELLAR BASAL-BODY ROD PROTEIN FLGC PROXIMAL ROD PROTEIN
          [Wolinella succinogenes]
          Length = 164

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 17/88 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M+ L+ F+ +    +    +   I  NI NA+     +   Y R++ +            
Sbjct: 1  MAFLSSFDISGYGLSAQRFRVNMISSNIANANTTRTDEGGPYRRKEVIFKAF-------- 52

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
             +   + ++ L  +++ +  +  L  
Sbjct: 53 ---DFDEVLNQKLGENNNLLKYEDPLDE 77


>gi|152975156|ref|YP_001374673.1| flagellar basal body rod protein FlgC [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152023908|gb|ABS21678.1| flagellar basal-body rod protein FlgC [Bacillus cytotoxicus NVH
          391-98]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+  +      Y RR  +   +
Sbjct: 1  MFQAINASGSGLTAARKWMEVSSDNIVNANTTSAPDGEPYRRRSVVLESN 50


>gi|313624924|gb|EFR94832.1| flagellar basal body rod protein FlgG [Listeria innocua FSL J1-023]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 44/218 (20%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R       SP    V T 
Sbjct: 3   GLYIGAAGMMNYMQYIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNSPVAKQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFITAKNGEISLSRGGQFHTD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      +  +  +  +   +    +        A+ ++ +    +         
Sbjct: 123 QFGFLRTADGANILSSTGEAIQVGQKTAIRAEANGDLYNAETNQYLGRLGTKFVSANQVD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            +V D       +  +  +    +  +   + E   + 
Sbjct: 183 NLVKDGEGRLHVNGINTMNLPAGQGNIQNGVLETSNVD 220



 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
               +I      T  V+L  E+  L+  ++    S  ++   DK+  
Sbjct: 204 AGQGNIQNGVLETSNVDLGVEMVQLMDNQRMVQASKNVVNMFDKVYD 250


>gi|47566127|ref|ZP_00237165.1| flagellar basal-body rod protein flgC [Bacillus cereus G9241]
 gi|206974761|ref|ZP_03235676.1| flagellar basal-body rod protein FlgC [Bacillus cereus H3081.97]
 gi|217959228|ref|YP_002337776.1| flagellar basal body rod protein FlgC [Bacillus cereus AH187]
 gi|229138444|ref|ZP_04267033.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST26]
 gi|47557044|gb|EAL15374.1| flagellar basal-body rod protein flgC [Bacillus cereus G9241]
 gi|206746780|gb|EDZ58172.1| flagellar basal-body rod protein FlgC [Bacillus cereus H3081.97]
 gi|217065314|gb|ACJ79564.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH187]
 gi|228644981|gb|EEL01224.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST26]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50



 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++  E++ ++  ++ Y  +  ++    KML   LE  +
Sbjct: 97  NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136


>gi|312962590|ref|ZP_07777080.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens
          WH6]
 gi|311283170|gb|EFQ61761.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens
          WH6]
          Length = 147

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA+  +      Y  R  +     +      
Sbjct: 1  MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQAGQNGG 60

Query: 55 QRSENKN 61
            S  + 
Sbjct: 61 SDSLFQE 67



 Score = 39.6 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143


>gi|253997380|ref|YP_003049444.1| flagellar basal body rod protein [Methylotenera mobilis JLW8]
 gi|253984059|gb|ACT48917.1| flagellar basal body rod protein [Methylotenera mobilis JLW8]
          Length = 99

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 8  NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
          +   +  N A  +      NI N    N+ R++ +    P   T
Sbjct: 4  SIPLSGMNAAQARLDVAANNIANLSTDNFTRKEVVQADLPGGGT 47


>gi|16802724|ref|NP_464209.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           EGD-e]
 gi|224502013|ref|ZP_03670320.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           R2-561]
 gi|16410071|emb|CAC98760.1| lmo0682 [Listeria monocytogenes EGD-e]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVD 220


>gi|47095247|ref|ZP_00232858.1| flagellar basal-body rod protein, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254829339|ref|ZP_05234026.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           N3-165]
 gi|254830327|ref|ZP_05234982.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           10403S]
 gi|254900082|ref|ZP_05260006.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           J0161]
 gi|254911365|ref|ZP_05261377.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935692|ref|ZP_05267389.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           F6900]
 gi|255026599|ref|ZP_05298585.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           J2-003]
 gi|284801012|ref|YP_003412877.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           08-5578]
 gi|284994154|ref|YP_003415922.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           08-5923]
 gi|47016318|gb|EAL07240.1| flagellar basal-body rod protein, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258601751|gb|EEW15076.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           N3-165]
 gi|258608274|gb|EEW20882.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           F6900]
 gi|284056574|gb|ADB67515.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           08-5578]
 gi|284059621|gb|ADB70560.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           08-5923]
 gi|293589301|gb|EFF97635.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVD 220


>gi|305432071|ref|ZP_07401238.1| flagellin family protein [Campylobacter coli JV20]
 gi|304445155|gb|EFM37801.1| flagellin family protein [Campylobacter coli JV20]
          Length = 754

 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/353 (10%), Positives = 103/353 (29%), Gaps = 3/353 (0%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D         +      +K        +   I     + ++ T +++ +   + +   
Sbjct: 405 MTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMARDSLNDTT 464

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +  ++ +      ++  +  ST+   +N     +                   N  T  
Sbjct: 465 LNLKVNSKGGNSYDVAINLQTSTVSYLDNLGQTISFPIMHTNPATGNSGVVTGSNDITYG 524

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
             ++ I +               G+I      +   +        +++    G  S  D 
Sbjct: 525 QINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDK 584

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           ++  +     L  +   +          +     N  + +N S   D  +V      +  
Sbjct: 585 LSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSM 644

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
             A     +    +S N        A    +  L ++       +    +    ++ ++ 
Sbjct: 645 IDAVLKGNMRADSESENPRNTGMQGALERLDH-LADHVSKLNTTMGAYHNTIEGVNTRTS 703

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  ++    SN + V+  E +  L++ + +Y  S K      ++  +LL  +
Sbjct: 704 FLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTTISQL--SLLNYM 754


>gi|229160708|ref|ZP_04288700.1| Flagellar basal-body rod protein FlgC [Bacillus cereus R309803]
 gi|228622723|gb|EEK79557.1| Flagellar basal-body rod protein FlgC [Bacillus cereus R309803]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAEPGADLYERRSVVLESN 50


>gi|209963543|ref|YP_002296458.1| flagellar basal-body rod protein FlgC, putative [Rhodospirillum
          centenum SW]
 gi|209957009|gb|ACI97645.1| flagellar basal-body rod protein FlgC, putative [Rhodospirillum
          centenum SW]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 13/73 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS------PEN 49
          L + F  A +     + +   +  N+ NA +         Y R+  +           + 
Sbjct: 4  LASSFGIAASGMKAQATRLRVVAENMANASSTGETPGADPYRRKTIVFDSVLDRALRADT 63

Query: 50 VTVVTQRSENKNM 62
          V V T   ++ + 
Sbjct: 64 VRVKTIGRDSSDF 76


>gi|220925380|ref|YP_002500682.1| flagellar basal body rod protein FlgC [Methylobacterium nodulans
          ORS 2060]
 gi|219949987|gb|ACL60379.1| flagellar basal-body rod protein FlgC [Methylobacterium nodulans
          ORS 2060]
          Length = 136

 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 13/75 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTIS------P 47
          M  +     A +     S +   I  NI NAD++        Y R+              
Sbjct: 1  MDFMKAIGIAASGLRAQSGRMRVISENIANADSEPKSAGAEPYRRKVPTFANRLDRELDA 60

Query: 48 ENVTVVTQRSENKNM 62
            V +   R +    
Sbjct: 61 SVVELGRVRRDQSPF 75



 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VNL  E   + + ++SY  +  +I    +M+   ++ +K
Sbjct: 96  NVNLLVETVDMREAQRSYEANLNMITAARRMISRTIDILK 135


>gi|170755952|ref|YP_001782255.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1
           str. Okra]
 gi|169121164|gb|ACA45000.1| flagellar basal body rod protein [Clostridium botulinum B1 str.
           Okra]
          Length = 255

 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   D                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTDLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              I             N      ++             + F  ++           +  
Sbjct: 61  IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +            A  V       D    + ++
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGSKTIGTDASGNISLN 166

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +  +  ++   ND    K    +       Q    + + + +   +  V N    ++ T
Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226

Query: 222 S 222
            
Sbjct: 227 M 227



 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 +              VA  N   +L +  
Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGSKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQSIDETLGKTVN 249


>gi|326386931|ref|ZP_08208545.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208611|gb|EGD59414.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 247

 Score = 45.4 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 25/123 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  + +  Q   I  N+ N+    +       T      + +  R+     
Sbjct: 1   MDRLIYTAYSGMSASMVQQRVIANNMANSQTTGFRAEMLAATPVSLKGSGLEARAMTDAE 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                            L        MM+               L         N     
Sbjct: 61  VRGASMKQGEMTQTGNPLDVAFNGDTMMAVQARDGTEAYTRRGDLTADANGMLVNGDNAP 120

Query: 123 LGK 125
           +  
Sbjct: 121 VLG 123


>gi|323341388|ref|ZP_08081632.1| flagellar basal-body rod protein FlgC [Lactobacillus ruminis ATCC
           25644]
 gi|323091265|gb|EFZ33893.1| flagellar basal-body rod protein FlgC [Lactobacillus ruminis ATCC
           25644]
          Length = 139

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 40/137 (29%), Gaps = 10/137 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
           MS+        +  +    +      NI N +     +   Y ++    + +        
Sbjct: 1   MSIFNGLQINASGLSLERMKLDVASTNIANVNTTRTAEGGPYKKKTVEFSENLRQAQGTN 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           + +        +   +++ +             +     +  N +    +  +  ++ +Y
Sbjct: 61  KITSAGVKVTNIAEDNTTKLTYDPTNPDA----DANGYVEMPNVNMADEMVDMIQAMRTY 116

Query: 115 SKNLSEDILGKTVIDNA 131
             N+S     K ++  A
Sbjct: 117 EANVSSTEANKNILKKA 133


>gi|224370789|ref|YP_002604953.1| FlgC [Desulfobacterium autotrophicum HRM2]
 gi|223693506|gb|ACN16789.1| FlgC [Desulfobacterium autotrophicum HRM2]
          Length = 165

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M LL     +         +   I  N+ N D         Y R+  +   
Sbjct: 1  MDLLDSMKISATGLAAHRTKMNVIAENLANVDTTRTADGGPYRRKMVVFKD 51


>gi|531461|gb|AAA67879.1| orfF [Bacillus subtilis subsp. subtilis str. 168]
          Length = 271

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/250 (8%), Positives = 59/250 (23%), Gaps = 16/250 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y                 + R+  + +
Sbjct: 1   MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK------------ADQGSMRAFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES----YSKNL 118
             ++     +   +  +      +            S          +L       S   
Sbjct: 49  LSRIESKSPAGTSRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMSAET 108

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +E       +  A+ +  + +++    +  +   +    L        +           
Sbjct: 109 NEKAALFYPVQTADGIRYSKSSTFSLNENNQLTINGRPILSTDRQPITVDNENFTVSENG 168

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +   A     +    ++ +           + ND+     +    +    R +   
Sbjct: 169 TVTTNGRTAGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSARGNNQVAYSLKTRRLRGF 228

Query: 239 KMNSYTVTSE 248
                T    
Sbjct: 229 SNVDVTSAYT 238


>gi|94495410|ref|ZP_01301990.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58]
 gi|94424798|gb|EAT09819.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58]
          Length = 247

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 4/211 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  + N A      A  + ASI  N+ NA+   +                   R++    
Sbjct: 1   MDRLVNTALTAMRGAMARQASIANNLANANTVGFRAEIANAETRWIQGESFDTRAQASEQ 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 A  +       L        +++      +        L+ S            
Sbjct: 61  VIAADMAQGAVTETGNPLDVALDGDALLTVQATDGSEAYTRRGDLKVSDSGLLTTGDGLP 120

Query: 123 LGK----TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +       ++   + V    + S   V +    A+ +   ++  +    S +   ND + 
Sbjct: 121 VLGEGGPVILPQMDSVSIAKDGSIWGVPQGGDPANPQQVDKLKLVNAAGSSIAKGNDGLF 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            +        D L        + S +     
Sbjct: 181 REVNGGALPSDPLATVTSGSLEGSNVNSTQA 211


>gi|126653751|ref|ZP_01725669.1| flagellar basal-body rod protein C [Bacillus sp. B14905]
 gi|126589715|gb|EAZ83851.1| flagellar basal-body rod protein C [Bacillus sp. B14905]
          Length = 153

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 10/55 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTI 45
          MS+    N   +       +   I  N+ N D             Y R+    T 
Sbjct: 1  MSIFHGMNTTASALTAQRLRMDVISSNMANMDTTRARQVNGEWEPYRRKSVTFTA 55


>gi|170725953|ref|YP_001759979.1| flagellar basal body rod protein FlgC [Shewanella woodyi ATCC
          51908]
 gi|169811300|gb|ACA85884.1| flagellar basal-body rod protein FlgC [Shewanella woodyi ATCC
          51908]
          Length = 139

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN + +  +  S +  +   NI NAD
Sbjct: 2  MSLFNIFNVSGSGMSAQSVRLNTTASNIANAD 33



 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 100 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTL 135


>gi|183598615|ref|ZP_02960108.1| hypothetical protein PROSTU_02015 [Providencia stuartii ATCC
          25827]
 gi|188020794|gb|EDU58834.1| hypothetical protein PROSTU_02015 [Providencia stuartii ATCC
          25827]
          Length = 134

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          M+LL++F+ + +     SQ+      N+ NA          +  +  +  ++P+    V 
Sbjct: 1  MALLSIFDISASALTAQSQRLNVSASNMANAESVVGPDGEPFRAKQVVFQMTPQGRNGVG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSQLIED 70



 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V++  E+   I   +SY  + +++     +LQ  L
Sbjct: 95  NVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTL 130


>gi|228938858|ref|ZP_04101458.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228971739|ref|ZP_04132360.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228978348|ref|ZP_04138725.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          Bt407]
 gi|228781365|gb|EEM29566.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          Bt407]
 gi|228787829|gb|EEM35787.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228820707|gb|EEM66732.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326939358|gb|AEA15254.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|229043498|ref|ZP_04191208.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH676]
 gi|229144356|ref|ZP_04272762.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST24]
 gi|296502344|ref|YP_003664044.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis
          BMB171]
 gi|228639143|gb|EEK95567.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BDRD-ST24]
 gi|228725876|gb|EEL77123.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH676]
 gi|296323396|gb|ADH06324.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis
          BMB171]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGTDLYERRSVVLESN 50


>gi|212634346|ref|YP_002310871.1| flagellar basal body rod protein FlgC [Shewanella piezotolerans
           WP3]
 gi|212555830|gb|ACJ28284.1| Flagellar basal-body rod protein FlgC [Shewanella piezotolerans
           WP3]
          Length = 138

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 13/107 (12%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           MSL  +FN A +  +  S +  +   NI NA              +  +    T R+ + 
Sbjct: 1   MSLFNIFNVAGSGMSAQSVRLNTTASNIANA-------------DAVSSSAGETYRARHP 47

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
               ++  A       Q +        ++    +     P       
Sbjct: 48  IFEAEMSKAQQHQSASQSVAVKGIVESDLPLNKEFSPGHPMADTDGF 94



 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +SY ++ ++      MLQ  L
Sbjct: 99  NVNVMEEMANMISASRSYQMNVQVTDAAKSMLQQTL 134


>gi|115523177|ref|YP_780088.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          BisA53]
 gi|115517124|gb|ABJ05108.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          BisA53]
          Length = 138

 Score = 45.4 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          L A    A +     S +   +  N+ NA++         Y R+ T    
Sbjct: 5  LQASIQIASSGLEVQSTRLRVVSENLANANSTGRAPGAEPYRRKTTTFAA 54


>gi|237753202|ref|ZP_04583682.1| flagellar basal-body rod protein flgc proximal rod protein
          [Helicobacter winghamensis ATCC BAA-430]
 gi|229375469|gb|EEO25560.1| flagellar basal-body rod protein flgc proximal rod protein
          [Helicobacter winghamensis ATCC BAA-430]
          Length = 166

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 17/92 (18%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVTQRS 57
          L+ F+ +    +   Q+   I  NI NA+     +   Y RR+ +               
Sbjct: 3  LSSFDISGYGLSAQRQRVNLISSNIANANTTRTDEGGPYRRRELVLKAF----------- 51

Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
          +   + ++     ++ +  +  L   ++  E 
Sbjct: 52 DFDKVLNQKYEKSNNLLEYEDPLNEMDSFDEQ 83


>gi|23099008|ref|NP_692474.1| flagellar basal body rod protein FlgC [Oceanobacillus iheyensis
          HTE831]
 gi|22777236|dbj|BAC13509.1| flagellar basal-body rod protein [Oceanobacillus iheyensis
          HTE831]
          Length = 151

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+    N + +       +   +  N+ NA + 
Sbjct: 1  MSIFNSMNTSASGLTAQRLRMDIVSSNVANAQST 34


>gi|307546970|ref|YP_003899449.1| flagellar basal body rod protein FlgC [Halomonas elongata DSM
          2581]
 gi|307218994|emb|CBV44264.1| flagellar basal body rod protein FlgC [Halomonas elongata DSM
          2581]
          Length = 135

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MS+ +VF  + +  +  SQ+      N+ NAD+      + Y  +  +   
Sbjct: 1  MSMFSVFEISGSAMSAQSQRMNVTASNLANADSVAGPDGEAYRAKQVLFET 51



 Score = 40.8 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            + Y +   V+   E+  +I   +SY  + +++    ++L   L  
Sbjct: 87  DQGYVDMPNVDPAAEMVNMISASRSYQANVEVMDTNKQLLLKTLSM 132


>gi|163856433|ref|YP_001630731.1| flagellar basal body rod protein FlgC [Bordetella petrii DSM
          12804]
 gi|163260161|emb|CAP42463.1| flagellar basal-body rod protein FlgC [Bordetella petrii]
          Length = 139

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 16/73 (21%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN-KN-----YVRRDTMTTISP------- 47
          MSL ++F+ A +     SQ+      N+ NAD+        Y  R  +  ++P       
Sbjct: 1  MSLTSIFDIAGSALQAQSQRMNVSASNLANADSAVGPDGQPYRARQVVFQVNPPAGQAYG 60

Query: 48 ---ENVTVVTQRS 57
               V V     
Sbjct: 61 REIGGVRVAGVVQ 73



 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475
            V+   E   +I   +SY  + +++    + M++TL
Sbjct: 99  NVDPVAETVNMIAASRSYQANVEVLNTAKQLMMKTL 134


>gi|30261743|ref|NP_844120.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          Ames]
 gi|47526963|ref|YP_018312.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49184573|ref|YP_027825.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          Sterne]
 gi|49480942|ref|YP_035864.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|52143711|ref|YP_083115.1| flagellar basal body rod protein FlgC [Bacillus cereus E33L]
 gi|65319012|ref|ZP_00391971.1| COG1558: Flagellar basal body rod protein [Bacillus anthracis
          str. A2012]
 gi|165869530|ref|ZP_02214189.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0488]
 gi|167633252|ref|ZP_02391577.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0442]
 gi|170686301|ref|ZP_02877523.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0465]
 gi|170706453|ref|ZP_02896913.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0389]
 gi|190566322|ref|ZP_03019240.1| flagellar basal-body rod protein FlgC [Bacillus anthracis
          Tsiankovskii-I]
 gi|196038959|ref|ZP_03106266.1| flagellar basal-body rod protein FlgC [Bacillus cereus
          NVH0597-99]
 gi|218902859|ref|YP_002450693.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH820]
 gi|227815498|ref|YP_002815507.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          CDC 684]
 gi|228914323|ref|ZP_04077938.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228926780|ref|ZP_04089848.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228933028|ref|ZP_04095891.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228945347|ref|ZP_04107702.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229090705|ref|ZP_04221938.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-42]
 gi|229121296|ref|ZP_04250527.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 95/8201]
 gi|229155315|ref|ZP_04283426.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 4342]
 gi|229602307|ref|YP_002866143.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0248]
 gi|254683233|ref|ZP_05147094.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          CNEVA-9066]
 gi|254723821|ref|ZP_05185607.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          A1055]
 gi|254740994|ref|ZP_05198682.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          Kruger B]
 gi|254755237|ref|ZP_05207271.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          Vollum]
 gi|254759773|ref|ZP_05211797.1| flagellar basal body rod protein FlgC [Bacillus anthracis str.
          Australia 94]
 gi|300117337|ref|ZP_07055127.1| flagellar basal body rod protein FlgC [Bacillus cereus SJ1]
 gi|301053281|ref|YP_003791492.1| flagellar basal body rod protein [Bacillus anthracis CI]
 gi|30255971|gb|AAP25606.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          Ames]
 gi|47502111|gb|AAT30787.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49178500|gb|AAT53876.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          Sterne]
 gi|49332498|gb|AAT63144.1| flagellar basal-body rod protein [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|51977180|gb|AAU18730.1| flagellar basal-body rod protein [Bacillus cereus E33L]
 gi|164714970|gb|EDR20488.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0488]
 gi|167531290|gb|EDR93968.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0442]
 gi|170128551|gb|EDS97418.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0389]
 gi|170669998|gb|EDT20739.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0465]
 gi|190562457|gb|EDV16424.1| flagellar basal-body rod protein FlgC [Bacillus anthracis
          Tsiankovskii-I]
 gi|196030104|gb|EDX68704.1| flagellar basal-body rod protein FlgC [Bacillus cereus
          NVH0597-99]
 gi|218535692|gb|ACK88090.1| flagellar basal-body rod protein FlgC [Bacillus cereus AH820]
 gi|227007024|gb|ACP16767.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          CDC 684]
 gi|228628240|gb|EEK84956.1| Flagellar basal-body rod protein FlgC [Bacillus cereus ATCC 4342]
 gi|228662141|gb|EEL17750.1| Flagellar basal-body rod protein FlgC [Bacillus cereus 95/8201]
 gi|228692647|gb|EEL46373.1| Flagellar basal-body rod protein FlgC [Bacillus cereus Rock3-42]
 gi|228814319|gb|EEM60585.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228826629|gb|EEM72400.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228832893|gb|EEM78462.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228845317|gb|EEM90353.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|229266715|gb|ACQ48352.1| flagellar basal-body rod protein FlgC [Bacillus anthracis str.
          A0248]
 gi|298725172|gb|EFI65824.1| flagellar basal body rod protein FlgC [Bacillus cereus SJ1]
 gi|300375450|gb|ADK04354.1| flagellar basal body rod protein [Bacillus cereus biovar
          anthracis str. CI]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|52082162|ref|YP_080953.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC
           14580]
 gi|52787554|ref|YP_093383.1| FlhO [Bacillus licheniformis ATCC 14580]
 gi|319648039|ref|ZP_08002256.1| FlhO protein [Bacillus sp. BT1B_CT2]
 gi|52005373|gb|AAU25315.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC
           14580]
 gi|52350056|gb|AAU42690.1| FlhO [Bacillus licheniformis ATCC 14580]
 gi|317389674|gb|EFV70484.1| FlhO protein [Bacillus sp. BT1B_CT2]
          Length = 279

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 65/251 (25%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y          PE +    +    K  
Sbjct: 1   MLKGLYTATSAMITQQRRTEMLTNNIANANTPGYKEDQGSIRSFPEMLLSRIESDSFKAG 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  + IG        + LK   S  D  + +    I+     +    +   +  
Sbjct: 61  SASRSFSTQTPIGSINTGVYMQELKPQFSQGDLQSTNEPTDIAISEAEVPVNGETNDKAA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   V     +V  + ++     +  +   +  + L   N    +             T 
Sbjct: 121 LFYAVRLENGDVRYSRSSRFSLNENNQLTINGRLVLSTENRPITVGSENFQVAEDGTVTE 180

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +      +  +  + ++          N   +     +    +           ++ 
Sbjct: 181 NGQNLGRIDVRIALDTRNLAREGDDLYRTENGEALPSAVGNPEVTYSVKQGMTERSNVDV 240

Query: 243 YTVTSESNPIF 253
               +E    +
Sbjct: 241 TRAYTEMTAAY 251


>gi|51894141|ref|YP_076832.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM
          14863]
 gi|51857830|dbj|BAD41988.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM
          14863]
          Length = 147

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPE 48
          M +      + +       +   I  N+ N       +   Y RR  +    P 
Sbjct: 1  MRMFQAMEASASALTAERLRMDVIANNLANYRTTRTAEGGPYRRRTVVVEERPN 54


>gi|153011526|ref|YP_001372740.1| flagellar basal body rod protein FlgC [Ochrobactrum anthropi ATCC
          49188]
 gi|151563414|gb|ABS16911.1| flagellar basal-body rod protein FlgC [Ochrobactrum anthropi ATCC
          49188]
          Length = 140

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 11/67 (16%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI NA +         Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTAETADADPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQR 56
                R
Sbjct: 61 TGAAEVR 67


>gi|146278635|ref|YP_001168794.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides
          ATCC 17025]
 gi|145556876|gb|ABP71489.1| protein of unknown function DUF1078 domain protein [Rhodobacter
          sphaeroides ATCC 17025]
          Length = 126

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-ENVTVVTQRSENKNMFDKVL 67
             + + +   +  NI N D   + R+       P   +        +++   K+ 
Sbjct: 14 GMRSQALRLRHVSENIANVDTPGFHRKTVSFQSEPDSGLVSTGPVRLDRSSLQKMY 69



 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
             VNL  E++   + ++SY  + ++     +M Q+L + ++
Sbjct: 85  SNVNLVVEIADAREAQRSYEANLRMFDQARQMTQSLFDLLR 125


>gi|46906933|ref|YP_013322.1| flagellar basal body rod protein FlgG [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46880199|gb|AAT03499.1| putative flagellar basal-body rod protein [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVARQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    S        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRSEANGDLYNAETGQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220


>gi|91976615|ref|YP_569274.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5]
 gi|91683071|gb|ABE39373.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5]
          Length = 244

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 31/139 (22%), Gaps = 4/139 (2%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQRSENKNMFD 64
              +      QQ  ++ RN+ N +   + R         T + E   + +    +     
Sbjct: 7   IGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKRSLVAVT 66

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                 + ++           L +                       +     LS D++ 
Sbjct: 67  GYTDFSAGSLQLTGNSTDAAVLGDGFFVVRTSRGDRYTRNGAFTLDKQGRLVTLSGDLVL 126

Query: 125 KTVIDNAEEVVQNFNTSAR 143
                    +     +   
Sbjct: 127 AANGTIKVPLTDVNLSIGT 145


>gi|124268256|ref|YP_001022260.1| flagellar basal body rod protein [Methylibium petroleiphilum PM1]
 gi|124261031|gb|ABM96025.1| flagellar basal body rod protein [Methylibium petroleiphilum PM1]
          Length = 138

 Score = 45.4 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISP 47
          MS+L +FN + +  +  SQ+   +  N+ NAD         Y  R  +    P
Sbjct: 1  MSMLNIFNVSGSAVSAQSQRLNVVASNLANADTVAGPDGKAYKARQVVFQTLP 53


>gi|148270547|ref|YP_001245007.1| flagellar basal-body rod protein FlgC [Thermotoga petrophila
          RKU-1]
 gi|170289253|ref|YP_001739491.1| flagellar basal-body rod protein FlgC [Thermotoga sp. RQ2]
 gi|147736091|gb|ABQ47431.1| flagellar basal-body rod protein FlgC [Thermotoga petrophila
          RKU-1]
 gi|170176756|gb|ACB09808.1| flagellar basal-body rod protein FlgC [Thermotoga sp. RQ2]
          Length = 140

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS   + N +    +    +   +  NI NA+         Y R+  +   
Sbjct: 2  MSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAE 52



 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E+  LI  +++Y+ +      T  M+ + L+  +
Sbjct: 92  ENGYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKAMVNSALQIGR 139


>gi|118581824|ref|YP_903074.1| flagellar basal-body rod protein FlgC [Pelobacter propionicus DSM
          2379]
 gi|118504534|gb|ABL01017.1| flagellar basal-body rod protein FlgC [Pelobacter propionicus DSM
          2379]
          Length = 145

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD---NK-N--YVRRDTMTTISP 47
          M   +  N + +  +    +   I  N+ NA+         Y R+D +   +P
Sbjct: 1  MDFFSAMNVSASALSAERTRMNLISSNLANANATRTPEGGPYKRKDAVFAATP 53


>gi|239815248|ref|YP_002944158.1| hypothetical protein Vapar_2263 [Variovorax paradoxus S110]
 gi|239801825|gb|ACS18892.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 259

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/156 (7%), Positives = 25/156 (16%), Gaps = 13/156 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  V   + N       +   I  N+ NA    Y R    +            R    + 
Sbjct: 1   MSDVLAISLNSMQQDMARLERISMNMANATTPGYKREVASSLQVGAGAFSDALREARAST 60

Query: 63  FDK-------------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
                              A   ++                                 + 
Sbjct: 61  LAGRAAGSPAAGTLLVQTDARPGSLKSTGQSLDVALTAAGFFEVSTDAGLAYTRQGSWQL 120

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
                        +     +           ++ +V
Sbjct: 121 DARGRLVTAQGHPVMGVGGEIVLSRPNPVIDASGQV 156


>gi|169827118|ref|YP_001697276.1| flagellar basal body rod protein FlgC [Lysinibacillus sphaericus
          C3-41]
 gi|168991606|gb|ACA39146.1| Flagellar basal-body rod protein [Lysinibacillus sphaericus
          C3-41]
          Length = 153

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 10/55 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTI 45
          MS+    N   +       +   I  N+ N D             Y R+    T 
Sbjct: 1  MSIFHGMNTTASALTAQRLRMDVISSNMANMDTTRARQVNGEWEPYRRKSVTFTA 55


>gi|254255088|ref|ZP_04948405.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158]
 gi|124899733|gb|EAY71576.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158]
          Length = 241

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/145 (8%), Positives = 28/145 (19%), Gaps = 1/145 (0%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
              A      A +       N+ NA    + R D +   S     V        ++    
Sbjct: 5   IYTAMTGAAYAQRALGVRANNLANAQTAGF-RADLVRAESLTPDGVGYDSRHLAHLVSTD 63

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
           +      + +                 +  +         L    +         +LG  
Sbjct: 64  VDVAPGPMSETGRSLDVAIAGAGYLTVETDDGPAYTRAGHLSIDGDGALTVNGRPVLGDG 123

Query: 127 VIDNAEEVVQNFNTSAREVQKIRAD 151
                             +  + + 
Sbjct: 124 GPIVLPAHRSATIGGDGTISVVPSG 148


>gi|295399807|ref|ZP_06809788.1| flagellar basal-body rod protein FlgC [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312111681|ref|YP_003989997.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y4.1MC1]
 gi|294978210|gb|EFG53807.1| flagellar basal-body rod protein FlgC [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311216782|gb|ADP75386.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y4.1MC1]
          Length = 150

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+    +   +       +   +  N+ N D  
Sbjct: 1  MSMFQNLDITASALTAQRLRMDVVSSNMANVDTT 34


>gi|126734106|ref|ZP_01749853.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp.
           CCS2]
 gi|126716972|gb|EBA13836.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp.
           CCS2]
          Length = 238

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 7/117 (5%), Positives = 21/117 (17%), Gaps = 3/117 (2%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+       +  ++  NI NA    +     +     + +              +     
Sbjct: 12  QSGLL---NEMQTLANNIANASTTGFRAEGIIFAEHVKTIGPDAPSLSMATANVRNTVMT 68

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
             A+ Q           +     +               +            +    
Sbjct: 69  QGALAQTGGTFDLAIEGDGFFLVETPGGPRLTRAGAFGPNENGDLVTADGYAVLDAG 125


>gi|83589621|ref|YP_429630.1| flagellar basal-body rod protein FlgC [Moorella thermoacetica
          ATCC 39073]
 gi|83572535|gb|ABC19087.1| flagellar basal-body rod protein FlgC [Moorella thermoacetica
          ATCC 39073]
          Length = 145

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M LL     + +       +   I  N+ N +         Y R   +   
Sbjct: 1  MELLPALAISASGLTAERLRLDIIANNLANINTTRTPRGGPYRREVPVFAE 51



 Score = 36.5 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +N+  E+  +I   ++Y  +  ++     M
Sbjct: 106 NINIVNEMVDMITASRAYEANVTVLNAAKAM 136


>gi|332533177|ref|ZP_08409046.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037459|gb|EGI73913.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 143

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
           MSL  VF+ A +  +  + +  +   NI NA+  +      Y  R  +        +   
Sbjct: 1   MSLYNVFDIAGSGMSAQNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASASV 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
              +   +  KVL    S    Q          +        N +    ++ +  +  SY
Sbjct: 61  SNQQGSAVGVKVLGIVESDAPLQIEYNPNHPSADENGYIYKPNVNVVEEMANMISASRSY 120

Query: 115 SKN 117
             N
Sbjct: 121 QTN 123



 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 40/122 (32%)

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
            +V      +  + A              +      +   + +V+  + +   +  L   
Sbjct: 17  QNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASASVSNQQGSAVGVKVLGIV 76

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            SD+      +    +     Y     VN+ EE++ +I   +SY  + ++     +ML  
Sbjct: 77  ESDAPLQIEYNPNHPSADENGYIYKPNVNVVEEMANMISASRSYQTNVQVADAAKQMLSK 136

Query: 475 LL 476
            L
Sbjct: 137 TL 138


>gi|114330359|ref|YP_746581.1| flagellar basal-body rod protein FlgC [Nitrosomonas eutropha C91]
 gi|114307373|gb|ABI58616.1| flagellar basal-body rod protein FlgC [Nitrosomonas eutropha C91]
          Length = 134

 Score = 45.4 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46
          MSL +VFN A +     SQ+   +  N+ NAD+      + Y  R  +    
Sbjct: 1  MSLFSVFNVAGSAMAAQSQRLNVVASNLANADSATSSTGEAYRSRQVVFRTV 52


>gi|260886210|ref|ZP_05897473.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC
           35185]
 gi|330839794|ref|YP_004414374.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC
           35185]
 gi|260863929|gb|EEX78429.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC
           35185]
 gi|329747558|gb|AEC00915.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC
           35185]
          Length = 264

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                + Q     I +       VN+  E+  LI   + Y   ++ ++  D M    + 
Sbjct: 200 PQQGAEPQAATGDIQQGMLENSNVNIASEMVSLINNYRIYEAGSRALVTQDSMTDKTVN 258



 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42
          +L     A +     + +   I  N+ NA +  Y R + +
Sbjct: 1  MLRGLYVAASGMITETNRTDVIANNLANAASSGYKRDEAI 40


>gi|228907377|ref|ZP_04071235.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL
          200]
 gi|228852238|gb|EEM97034.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis IBL
          200]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGTDLYERRSVVLESN 50


>gi|229029424|ref|ZP_04185507.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1271]
 gi|228731883|gb|EEL82782.1| Flagellar basal-body rod protein FlgC [Bacillus cereus AH1271]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50



 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++  E++ ++  ++ Y  +  ++    KML   LE  +
Sbjct: 97  NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136


>gi|116250480|ref|YP_766318.1| flagellar basal body rod protein FlgC [Rhizobium leguminosarum
          bv. viciae 3841]
 gi|115255128|emb|CAK06202.1| putative flagellar basal-body rod protein flgc (putative proximal
          rod protein) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 138

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT---ISPENVTV 52
          L A    A +     S +   +  NI NA    D      Y R+             V  
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDRSNGVET 63

Query: 53 VTQ 55
          V  
Sbjct: 64 VGV 66


>gi|170758901|ref|YP_001787959.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405890|gb|ACA54301.1| flagellar basal body rod protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 255

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 +              VA  N   +L +  
Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQSIDETLGKTVN 249



 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   +                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              I             N      ++             + F  ++           +  
Sbjct: 61  IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +            A  V       D    + ++
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDASGNISLN 166

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +  +  ++   ND    K    +       Q    + + + +   +  V N    ++ T
Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226

Query: 222 S 222
            
Sbjct: 227 M 227


>gi|196033444|ref|ZP_03100856.1| flagellar basal-body rod protein FlgC [Bacillus cereus W]
 gi|195993878|gb|EDX57834.1| flagellar basal-body rod protein FlgC [Bacillus cereus W]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADIYERRSVVLESN 50


>gi|56965598|ref|YP_177332.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16]
 gi|56911844|dbj|BAD66371.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16]
          Length = 265

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 32/151 (21%), Gaps = 21/151 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE-------------- 48
           +L     A +    A      +  N+ NA    Y    +++   P               
Sbjct: 1   MLKGLYTATSGMLAAQYHQDMLANNLANAQTPGYKAEQSVSRAFPTFLMEAQSVSKAGTV 60

Query: 49  -----NVTVVTQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                         + +    +   +    +      L    E    +  A    N    
Sbjct: 61  QKQGLGSLATAVYLQEQQTNARQGDIQETGNTTDLALLQTGLEENNAVFFAVMTENGIRY 120

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
                L+   +         +L  T     +
Sbjct: 121 TRNGDLQVDSQGRLATAGGHLLQSTEGGPIQ 151


>gi|90422608|ref|YP_530978.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          BisB18]
 gi|90104622|gb|ABD86659.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          BisB18]
          Length = 139

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          L A    A +     S +   +  N+ NA++         Y R+ T  T 
Sbjct: 5  LQASVQIASSGLEAQSTRLRVVSENLANANSTGRSPGAEPYQRKTTTFTA 54


>gi|289609890|emb|CBI60366.1| unnamed protein product [Sordaria macrospora]
          Length = 90

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 10/76 (13%)

Query: 21 FASIVRNIENADNKNYVRRDTMTTISPEN----------VTVVTQRSENKNMFDKVLHAH 70
           ASI  N+ N     + +          +           +    +   +   +  L   
Sbjct: 1  MASISHNLANVGTTGFKKSRAEFADVIASNLAVAPTQMVGSGTVVKGNRQQFGEGNLVQS 60

Query: 71 SSAIGQQRLLQSFEAL 86
          SS++        F AL
Sbjct: 61 SSSLDIAIAGDGFFAL 76


>gi|114562340|ref|YP_749853.1| flagellar basal body rod protein FlgC [Shewanella frigidimarina
          NCIMB 400]
 gi|114333633|gb|ABI71015.1| flagellar basal-body rod protein FlgC [Shewanella frigidimarina
          NCIMB 400]
          Length = 138

 Score = 45.4 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN + +  +  S +  +   NI NAD
Sbjct: 1  MSLFNIFNVSGSGMSAQSVRLNTTASNIANAD 32



 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++   T  MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVADATKSMLQQTLRM 136


>gi|27363704|ref|NP_759232.1| flagellar basal body rod protein FlgF [Vibrio vulnificus CMCP6]
 gi|27359820|gb|AAO08759.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus CMCP6]
          Length = 249

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/124 (7%), Positives = 21/124 (16%), Gaps = 12/124 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R                  
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +        +  + + +  +             L+        
Sbjct: 61  RPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGL------TRNGNLKVDQNGLLS 114

Query: 117 NLSE 120
           N S 
Sbjct: 115 NASG 118



 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM---LQTLLEG 478
            I         VN   E++ LI +++ + +  K++   ++M     +LL  
Sbjct: 198 QIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDKSSDSLLRM 248


>gi|83814111|ref|YP_446742.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855]
 gi|83755505|gb|ABC43618.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855]
          Length = 241

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              S +             + +    T  V+   EL+ +I++++ +    K I  TD +L
Sbjct: 172 SGASFAAGDAQPQAAENPVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGVL 231



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/123 (7%), Positives = 23/123 (18%), Gaps = 3/123 (2%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           F  A    +    Q   +  N+ NA    Y +     T +            +    ++ 
Sbjct: 5   FQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTEALNERLTKDGSPISDRRLEQA 63

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLSEDILG 124
                 ++ +           E                         +   +      + 
Sbjct: 64  NDLSGGSLKETGNPLDVALGDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLRTPEGREVM 123

Query: 125 KTV 127
              
Sbjct: 124 GEG 126


>gi|56421867|ref|YP_149185.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426]
 gi|56381709|dbj|BAD77617.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426]
          Length = 276

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 6/135 (4%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 +       +         +   +    +      N       VA      TL++
Sbjct: 142 SPDGYLTTQEGWYVLDANGERIPLSSERFAVRDDGTIIDENGTATRLGVAFAANPQTLVK 201

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                       RS +  L      V   + + +     V+++  ++ L+   +++  + 
Sbjct: 202 EGNGL------FRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYRAFEANQ 255

Query: 463 KLIMFTDKMLQTLLE 477
           K++   D+ L   + 
Sbjct: 256 KIVQAYDRSLDKAVN 270



 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 6/161 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  N+ NA+   Y          P    ++  R E++ +
Sbjct: 1   MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFP---ELLMSRLEDQPI 57

Query: 63  FDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 A    + IG        + L       D         I  L D      +   +
Sbjct: 58  PTASRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDI-ALVDGQVPVDRASGQ 116

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                  + N +  V+        +        +E    + 
Sbjct: 117 RGALFFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWYVLD 157


>gi|16080693|ref|NP_391521.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311597|ref|ZP_03593444.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315924|ref|ZP_03597729.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320837|ref|ZP_03602131.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221325122|ref|ZP_03606416.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|6648066|sp|P39752|FLHO_BACSU RecName: Full=Flagellar hook-basal body complex protein flhO
 gi|1763700|emb|CAB05950.1| flhO [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636165|emb|CAB15657.1| putative flagellar basal-body rod protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 270

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/255 (7%), Positives = 62/255 (24%), Gaps = 16/255 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y                 + R+  + +
Sbjct: 1   MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK------------ADQGSMRAFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES----YSKNL 118
             ++     +   +  +      +            S          +L       S   
Sbjct: 49  LSRIESKSPAGTSRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMSAET 108

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +E       +  A+ +  + +++    +  +   +    L        +           
Sbjct: 109 NEKAALFYPVQTADGIRYSKSSTFSLNENNQLTINGRPILSTDRQPITVDNENFTVSENG 168

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +   A     +    ++ +           + ND+     +    +          
Sbjct: 169 TVTTNGRTAGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVAYSLKQGVSELS 228

Query: 239 KMNSYTVTSESNPIF 253
            ++  +  +E    +
Sbjct: 229 NVDVTSAYTEMTEAY 243


>gi|57167903|ref|ZP_00367043.1| probable flagellin Cj0887c [Campylobacter coli RM2228]
 gi|57021025|gb|EAL57689.1| probable flagellin Cj0887c [Campylobacter coli RM2228]
          Length = 734

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/354 (8%), Positives = 106/354 (29%), Gaps = 3/354 (0%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D         +      +K        +   I     + ++ T +++ +   + +   
Sbjct: 383 MTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTT 442

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +  ++ +      ++  +  ST+   + +    T     +        +     S  +T
Sbjct: 443 LNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNSGVVTGSNDIT 502

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                  I          + +     +        +  + ++    +   +         
Sbjct: 503 YGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVT 562

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +S     + ++D             + T+   P +  + +        +   + ++ 
Sbjct: 563 DKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLD 622

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++       N   DS ++N     + G    +  L ++       +    +    ++ ++
Sbjct: 623 SMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRT 682

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  ++    SN + V+  E +  L++ + +Y  S K      ++  +LL  +
Sbjct: 683 SFLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTTISQL--SLLNYM 734


>gi|294501851|ref|YP_003565551.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium
           QM B1551]
 gi|294351788|gb|ADE72117.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium
           QM B1551]
          Length = 274

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 48/186 (25%), Gaps = 29/186 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTMTTISPEN 49
           +   F  A     +  +Q   +  NI NA+   +               +   +   P +
Sbjct: 1   MFKGFYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTD 60

Query: 50  VTVVTQRSEN--------------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-- 93
            ++  Q  ++               N     L   S +     + Q+    +  +     
Sbjct: 61  RSISVQNKKDIGAINTGVYMQETVPNFTQGDLQQTSQSTDIALMEQNMPTKEGGLFFVVQ 120

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
              N       S      E +    +   +  T     +   +NF   ++          
Sbjct: 121 SPDNTPQYTRNSNFTLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQV 180

Query: 154 KEIELE 159
            +I++ 
Sbjct: 181 AQIDIA 186



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/199 (6%), Positives = 48/199 (24%), Gaps = 1/199 (0%)

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
           D         + E          ++   + +   +                    +    
Sbjct: 70  DIGAINTGVYMQETVPNFTQGDLQQTSQSTDIALMEQNMPTKEGGLFFVVQSPDNTPQYT 129

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS-FNKNFIFDPVAGINTNV 398
            N  +  +        + +     N + +    +           +N        I    
Sbjct: 130 RNSNFTLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQVAQIDIAYAS 189

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY 458
            L    +   G  E   +        +  +   + + +     V+  + ++ L+   +++
Sbjct: 190 DLQTIKKAGNGLYETLNNQPLPSARNNPGISYQLKQGFVERSNVDAAQNMTDLLTAYRAF 249

Query: 459 NISNKLIMFTDKMLQTLLE 477
             + K++   D+ +     
Sbjct: 250 EANQKIMQAYDRSMDKAAN 268


>gi|95929195|ref|ZP_01311939.1| protein of unknown function DUF1078-like [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134693|gb|EAT16348.1| protein of unknown function DUF1078-like [Desulfuromonas
           acetoxidans DSM 684]
          Length = 111

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 1/110 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENKN 61
           ++   + A +     + +  S   N+ N+  + Y         +    V    Q+  N  
Sbjct: 1   MIDAMSSAMSGLQAQTLRLNSTANNVANSQTEGYAPSQVTLAENEQGGVRAQLQKPVNGT 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
              +     +S +   + +      K+  SA+    +        L D+ 
Sbjct: 61  GDAQTAENQTSKVDLAKEMVDMMQTKQFYSANLKTVSVADSMSGDLLDTF 110



 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%)

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
              + +       +    +  A    N     YA + +   E  +        K      
Sbjct: 2   IDAMSSAMSGLQAQTLRLNSTANNVANSQTEGYAPSQVTLAENEQGGVRAQLQKPVNGTG 61

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
               + + T  V+L +E+  +++ +Q Y+ + K +   D M   LL
Sbjct: 62  DAQTAENQTSKVDLAKEMVDMMQTKQFYSANLKTVSVADSMSGDLL 107


>gi|42780837|ref|NP_978084.1| flagellar basal body rod protein FlgC [Bacillus cereus ATCC
          10987]
 gi|222095368|ref|YP_002529428.1| flagellar basal body rod protein flgc [Bacillus cereus Q1]
 gi|229195957|ref|ZP_04322710.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1293]
 gi|42736757|gb|AAS40692.1| flagellar basal-body rod protein FlgC [Bacillus cereus ATCC
          10987]
 gi|221239426|gb|ACM12136.1| flagellar basal-body rod protein FlgC [Bacillus cereus Q1]
 gi|228587516|gb|EEK45581.1| Flagellar basal-body rod protein FlgC [Bacillus cereus m1293]
          Length = 137

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50



 Score = 36.9 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++  E++ ++  ++ Y  +  ++    KML   LE  +
Sbjct: 97  NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136


>gi|118477180|ref|YP_894331.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis
          str. Al Hakam]
 gi|118416405|gb|ABK84824.1| flagellar basal-body rod protein [Bacillus thuringiensis str. Al
          Hakam]
          Length = 137

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|88597597|ref|ZP_01100831.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190189|gb|EAQ94164.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 750

 Score = 45.0 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 116/388 (29%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++    +  + ++   +           D +   + D         +      +K     
Sbjct: 365 NNGDITNLNNPVTIQINGQNFEIDLKQTDFIKSKMTDTDGNAANGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            + +    T     +        +     S  +T       I          + +     
Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           +        +  + ++    +   +            +S     + ++D           
Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T+   P +  + +        +   + ++ ++       N   DS ++N     + 
Sbjct: 605 TTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +    ++ ++  +  +I    SN + V+  E +  L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNIQSIKSNVIDVDYGEAMMNL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|332704824|ref|ZP_08424912.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554973|gb|EGJ52017.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 277

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/148 (6%), Positives = 22/148 (14%), Gaps = 31/148 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---------------- 46
           +      A     ++  +   I  N+ N     Y                          
Sbjct: 1   MQEAIYSAVFGALSSEHRMNIISNNLANVSTTGYKTDSVTFKDVFVPFAHDYILDSKEHL 60

Query: 47  ---PENVTVVTQRSEN-----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
              P                  +     L      +        F  +          + 
Sbjct: 61  RAKPLWPDADVIAKPRLAEHKTDFAQGSLRKTGDPLDLAIQGDGFFKIL-------TPDG 113

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKT 126
                             + + + L  T
Sbjct: 114 VRYTRNGHFNAMPNGQIVDSNGNPLLGT 141



 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/197 (7%), Positives = 46/197 (23%)

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +   +    + +    G   +          +         ++                 
Sbjct: 77  LAEHKTDFAQGSLRKTGDPLDLAIQGDGFFKILTPDGVRYTRNGHFNAMPNGQIVDSNGN 136

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                   +   GS   +         G   +       F+              ++   
Sbjct: 137 PLLGTDGPIFLSGSGVVEIDPAGNVSEGGAQVGTIALVRFDNPRGVIKDGQNLYKLSEDF 196

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
            A             +         +   I + +  +  V +  E+  +I+V + +    
Sbjct: 197 EANEMAVSPGMPEITTGSDGTPQTRISPVIQQGFLESSNVEIVTEMVRMIEVNRVFEAYQ 256

Query: 463 KLIMFTDKMLQTLLEGV 479
           K++  T  M  +L++ +
Sbjct: 257 KIMRGTQDMDSSLIKSM 273


>gi|241766918|ref|ZP_04764724.1| flagellar basal-body rod protein FlgC [Acidovorax delafieldii
          2AN]
 gi|241362622|gb|EER58470.1| flagellar basal-body rod protein FlgC [Acidovorax delafieldii
          2AN]
          Length = 134

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++F+ + +  +  SQ+   +  N+ N D         Y  R  +   +P       
Sbjct: 1  MSMFSIFSVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGADSSA 60

Query: 55 QRSEN 59
              +
Sbjct: 61 GVRVS 65


>gi|15644117|ref|NP_229166.1| flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8]
 gi|281412855|ref|YP_003346934.1| flagellar basal-body rod protein FlgC [Thermotoga naphthophila
          RKU-10]
 gi|4981925|gb|AAD36435.1|AE001790_7 flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8]
 gi|281373958|gb|ADA67520.1| flagellar basal-body rod protein FlgC [Thermotoga naphthophila
          RKU-10]
          Length = 140

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS   + N +    +    +   +  NI NA+         Y R+  +   
Sbjct: 2  MSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAE 52



 Score = 40.4 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E+  LI  +++Y+ +      T  M+ + L+  +
Sbjct: 92  ENGYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKAMVNSALQIGR 139


>gi|328958286|ref|YP_004375672.1| flagellar basal body rod protein FlgC [Carnobacterium sp. 17-4]
 gi|328674610|gb|AEB30656.1| flagellar basal body rod protein FlgC [Carnobacterium sp. 17-4]
          Length = 145

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+        +  +    +  +I  NI N +  
Sbjct: 1  MSIFDSMQINASGLSLERLKLDTISTNIANVNTT 34



 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            E Y     VN+ +E+  ++   ++Y+ +   +  + +ML   L+ 
Sbjct: 97  EEGYVQMPNVNMADEMIDMMTTLRTYDANVTAMNASKEMLTKALQI 142


>gi|330811237|ref|YP_004355699.1| flagellar basal-body rod protein [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327379345|gb|AEA70695.1| Putative flagellar basal-body rod protein [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 147

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MS+ +VFN A +  +  + +  ++  NI NA+  +      Y  R  +     +      
Sbjct: 1  MSIASVFNIAGSAMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGG 60

Query: 55 QRSENKN 61
            S  + 
Sbjct: 61 SDSLFQE 67



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143


>gi|295707199|ref|YP_003600274.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium
           DSM 319]
 gi|294804858|gb|ADF41924.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium
           DSM 319]
          Length = 274

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 46/186 (24%), Gaps = 29/186 (15%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-------------RDTMTTISPEN 49
           +   F  A     +  +Q   +  NI NA+   +               +   +   P +
Sbjct: 1   MFKGFYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTD 60

Query: 50  VTVVTQRS--------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-- 93
            ++  Q                   +     L   S +     + Q+    +  +     
Sbjct: 61  RSISVQNKKEIGAINTGVYMQETVPSFTQGDLQQTSQSTNIALMEQNMPTKEGGLFFVVQ 120

Query: 94  DHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153
              N       S      E +    +   +  T     +   +NF   ++          
Sbjct: 121 SPDNTPQYTRNSNFTLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQV 180

Query: 154 KEIELE 159
            +I++ 
Sbjct: 181 AQIDIA 186



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/197 (7%), Positives = 50/197 (25%), Gaps = 3/197 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
           +     Q  +    +  +   S+   IA   +N+P                   +     
Sbjct: 75  NTGVYMQETVPSFTQGDLQQTSQSTNIALMEQNMPTKEGGLFFVVQSPDNTPQYTRNSNF 134

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
                   +       ++            +           N+      +A  +   T+
Sbjct: 135 TLDQEGFLTTSTGAYVLNTNNQPIQLKSENFTVDSQGNVTENNQQVAQIDIAYASDLQTI 194

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
            +         E   +        +  +   + + +     V+  + ++ L+   +++  
Sbjct: 195 KKVGNGLY---ETLNNQPLPSARNNPGISYQLKQGFVERSNVDAAQSMTDLLTAYRAFEA 251

Query: 461 SNKLIMFTDKMLQTLLE 477
           + K++   D+ +     
Sbjct: 252 NQKIMQAYDRSMDKAAN 268


>gi|255021352|ref|ZP_05293400.1| Flagellar basal-body rod protein flgC [Acidithiobacillus caldus
          ATCC 51756]
 gi|254969215|gb|EET26729.1| Flagellar basal-body rod protein flgC [Acidithiobacillus caldus
          ATCC 51756]
          Length = 138

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP 47
          MSL +V + A +     S +   +  N+ NA++        Y  R+ +   +P
Sbjct: 1  MSLFSVLDVASSALTAQSYRLNVVASNLANANSATSSDGQPYRAREVVFAATP 53



 Score = 40.0 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           E Y     VN  +E+  +I   ++Y  +  ++  T  +LQ  L
Sbjct: 92  EGYVQMPNVNPVDEMVNMISASRAYQANVNVMNTTKALLQKTL 134


>gi|125972983|ref|YP_001036893.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          ATCC 27405]
 gi|125713208|gb|ABN51700.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum
          ATCC 27405]
          Length = 134

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           +I +NI N D   Y R+      
Sbjct: 24 EAISQNIANVDTTGYKRKTVAFEE 47


>gi|330826756|ref|YP_004390059.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans
           K601]
 gi|329312128|gb|AEB86543.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans
           K601]
          Length = 246

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    + A+ + A +  N+ N     +    +     P   +  T R      
Sbjct: 1   MDRIIYTSMTGASAAAHRQAVLANNLANVSTYGFRAEMSSFRSVPLQGSGSTTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +          R L +  A     +                  +        +   
Sbjct: 61  TSGHVETPGPVQRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTGLP 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +                T   
Sbjct: 121 VLSDGGAPITAPQGAELTLGA 141


>gi|262276416|ref|ZP_06054225.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP
           101886]
 gi|262220224|gb|EEY71540.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP
           101886]
          Length = 249

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 25/125 (20%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ NA    + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQDMQALQLRANNLANASTTGF-RADLEQARSMQAYGEGLPTRVFNMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +            +        + A+ +    +          +  L+       
Sbjct: 60  ERPGYSFAQGSTITTGRELDVAIKGDGWLAVLDGTGQEG------YTRVGNLKVDQTGML 113

Query: 116 KNLSE 120
           +N   
Sbjct: 114 QNGHG 118



 Score = 40.0 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +         VN   E++ LI +++ + +  KL+   ++M Q     ++
Sbjct: 198 SLLTGALEGSNVNPINEMTGLIDLQRHFEMQVKLMKTAEEMDQASNSLLR 247


>gi|241203100|ref|YP_002974196.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856990|gb|ACS54657.1| flagellar basal-body rod protein FlgF [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 244

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 37/149 (24%), Gaps = 8/149 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQR 56
           + +    + +      ++  +I  N+ N +   +   +              N  V    
Sbjct: 1   MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60

Query: 57  SENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             N  +   +  L    + +       ++ AL          +   T   +    S+  Y
Sbjct: 61  QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
               +     +      E  V       +
Sbjct: 121 PVLDAGGAPIQLNTKGGEPAVGTDGIIYQ 149


>gi|330501138|ref|YP_004378007.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01]
 gi|328915424|gb|AEB56255.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01]
          Length = 243

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 12/191 (6%)

Query: 10  AQNICNNASQ---QFASIVRNIENADNKNYVRRDTMTTIS----PENVTVVTQRSENKNM 62
                  AS+          N+ N +   + R D     +                  N 
Sbjct: 5   GYTAMTAASRTMSSLTVRANNLANVNTPGF-RADLEQAQAVAVEGYGYDSRHLARVKNNG 63

Query: 63  FD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +     L A    +      +   A++    A+ +  N      ++LR +L   +    
Sbjct: 64  VNLAPGELMATGRDLDVAIQGRGLFAVEGDDGAERYTRNGALQVDAELRLTLNGRAVLGE 123

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
              +     D+         +       + A+ D+   +++        + + +   I  
Sbjct: 124 GGPIVLPEYDSLHIGRDGTVSVIPRGDFVTAEVDRIRVVDVDAA-DLTKDASGLLTRIDG 182

Query: 180 KTASKHDAHDF 190
           + A   DA   
Sbjct: 183 QPAEGLDAPVL 193


>gi|119775449|ref|YP_928189.1| flagellar basal body rod protein FlgF [Shewanella amazonensis SB2B]
 gi|119767949|gb|ABM00520.1| flagellar basal-body rod protein FlgF [Shewanella amazonensis SB2B]
          Length = 247

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 27/127 (21%), Gaps = 12/127 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +         +    N+ NA+   +       R                  +   
Sbjct: 5   LYIAMSGAKQNLNSLSIRANNLANANTDGFKADLEQSRSMQAFGEGLPTRVFAMTENPQA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     +++ +  +        + A+++         N        L+        N   
Sbjct: 65  SFRHGPINSTARDLDVAVKGDGWIAVEDA------DGNEAYTRAGSLKFDETGLLTNSQG 118

Query: 121 DILGKTV 127
             +    
Sbjct: 119 RPVMGDA 125



 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +         VN  EE+  LI +++ + +  K++   ++
Sbjct: 196 ALESRAVEGSNVNPVEEMVALIDIQRQFELQVKMMKTAEE 235


>gi|319405399|emb|CBI79018.1| Flagellar basal-body rod protein flgC [Bartonella sp. AR 15-3]
          Length = 138

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          MS  L+A    A    +  S +   I  N+ N ++         Y R+      
Sbjct: 1  MSDLLIAAEQIATTGLSAQSTRLRVIAENLANVNSTGKSAGARPYQRKTVSFEA 54


>gi|168180937|ref|ZP_02615601.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916]
 gi|182668349|gb|EDT80328.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916]
          Length = 255

 Score = 45.0 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/229 (6%), Positives = 42/229 (18%), Gaps = 28/229 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   +                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              I             N      ++             + F  ++           +  
Sbjct: 61  IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +                          +     
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNIILNGVPSYSF 173

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            +  F    ++          +     + + +++ L +    +      
Sbjct: 174 QVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVT 222



 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 +              VA  N   +L +  
Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNIILNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVTMLTTMRSFETNQKI 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQSIDETLGKTVN 249


>gi|308050374|ref|YP_003913940.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM
          9799]
 gi|307632564|gb|ADN76866.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM
          9799]
          Length = 139

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +F+ A +  +  S +  +   NI NA+
Sbjct: 1  MSLFKIFDTAGSGMSAQSVRLNTTASNIANAN 32



 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++      M Q  L  
Sbjct: 99  NVNVVEEMANMISASRSYQANVQVASAAKDMAQQTLRL 136


>gi|94987182|ref|YP_595115.1| flagellar basal body rod protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731431|emb|CAJ54794.1| Flagellar basal body rod protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 264

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/187 (8%), Positives = 50/187 (26%), Gaps = 7/187 (3%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
             + ++            +      +                 N L +  S  +    Q 
Sbjct: 72  AARVRIAVSNTDFAQGSMQFTGNPLDFAITGENGFFRIQSPQGNYLTRNGSFVLDATGQL 131

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
               +            +   +         +    + +          ++    L +  
Sbjct: 132 ---VTKQGWPVLGDGGPITIPEGTKKISITPDGRIFADDAEVGTIQFVSLDDVKKLEKVG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N      + +     +   +      I++ +  +  VN+ EE+  +I+V + ++   K+
Sbjct: 189 ANLY----RPKEGLEIIEGNANETGAIINQGFLESSNVNVVEEMVKMIEVNRQFDAYQKV 244

Query: 465 IMFTDKM 471
           +  +D +
Sbjct: 245 MQTSDSL 251



 Score = 41.2 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/226 (5%), Positives = 43/226 (19%), Gaps = 35/226 (15%)

Query: 12  NICNNASQQ---FASIVRNIENADNKNYVRRDTMTTIS---------------------- 46
           +    A         I  N+ N +   Y +       +                      
Sbjct: 7   SGLFAALSAEHRMNFIANNLANVNTAGYKQDKLAFKDTMIQFAHDQIREPIATVRSKPLF 66

Query: 47  --PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
             P N   V     N +     +    + +            +           +     
Sbjct: 67  PEPNNAARVRIAVSNTDFAQGSMQFTGNPLDFAITG------ENGFFRIQSPQGNYLTRN 120

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS--AREVQKIRADADKEIELEISN 162
                             +                +      +    A+      + + +
Sbjct: 121 GSFVLDATGQLVTKQGWPVLGDGGPITIPEGTKKISITPDGRIFADDAEVGTIQFVSLDD 180

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           +++       +    +     + +A++     +    + S +  + 
Sbjct: 181 VKKLEKVGANLYRPKEGLEIIEGNANETGAIINQGFLESSNVNVVE 226


>gi|33596138|ref|NP_883781.1| flagellar basal body rod protein FlgC [Bordetella parapertussis
          12822]
 gi|33601539|ref|NP_889099.1| flagellar basal body rod protein FlgC [Bordetella bronchiseptica
          RB50]
 gi|33573141|emb|CAE36788.1| flagellar basal-body rod protein FlgC [Bordetella parapertussis]
 gi|33575975|emb|CAE33054.1| flagellar basal-body rod protein FlgC [Bordetella bronchiseptica
          RB50]
          Length = 139

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP------- 47
          MSLL++F  A +  +  SQ+      N+ NAD+        Y  R  +  ++P       
Sbjct: 1  MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPPGQAFG 60

Query: 48 ---ENVTVVTQRSENKNM 62
               V V     +    
Sbjct: 61 QEIGGVRVAGVVEDQSPF 78



 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475
           + Y N   V+   E   +I   +SY  + +++    + ML+TL
Sbjct: 92  QGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTL 134


>gi|302670715|ref|YP_003830675.1| flagellar basal-body rod protein FlgB [Butyrivibrio
          proteoclasticus B316]
 gi|302395188|gb|ADL34093.1| flagellar basal-body rod protein FlgB [Butyrivibrio
          proteoclasticus B316]
          Length = 131

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI N D   Y R+D     
Sbjct: 25 EVIANNIANVDTPGYKRQDLNFED 48


>gi|17989433|ref|NP_542066.1| flagellar basal body rod protein FlgC [Brucella melitensis bv. 1
          str. 16M]
 gi|62317101|ref|YP_222954.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 1
          str. 9-941]
 gi|83269093|ref|YP_418384.1| flagellar basal body rod protein FlgC [Brucella melitensis biovar
          Abortus 2308]
 gi|163844344|ref|YP_001621999.1| flagellar basal body rod protein FlgC [Brucella suis ATCC 23445]
 gi|189022366|ref|YP_001932107.1| flagellar basal body rod protein FlgC [Brucella abortus S19]
 gi|225628623|ref|ZP_03786657.1| flagellar basal-body rod protein FlgC [Brucella ceti str. Cudo]
 gi|225686010|ref|YP_002733982.1| flagellar basal body rod protein FlgC [Brucella melitensis ATCC
          23457]
 gi|237816663|ref|ZP_04595655.1| flagellar basal-body rod protein FlgC [Brucella abortus str. 2308
          A]
 gi|254691414|ref|ZP_05154668.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 6
          str. 870]
 gi|254695288|ref|ZP_05157116.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 3
          str. Tulya]
 gi|254698386|ref|ZP_05160214.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 2
          str. 86/8/59]
 gi|254699459|ref|ZP_05161287.1| flagellar basal body rod protein FlgC [Brucella suis bv. 5 str.
          513]
 gi|254706294|ref|ZP_05168122.1| flagellar basal body rod protein FlgC [Brucella pinnipedialis
          M163/99/10]
 gi|254711412|ref|ZP_05173223.1| flagellar basal body rod protein FlgC [Brucella pinnipedialis
          B2/94]
 gi|254712011|ref|ZP_05173822.1| flagellar basal body rod protein FlgC [Brucella ceti M644/93/1]
 gi|254715080|ref|ZP_05176891.1| flagellar basal body rod protein FlgC [Brucella ceti M13/05/1]
 gi|256014940|ref|YP_003104949.1| flagellar basal body rod protein [Brucella microti CCM 4915]
 gi|256029958|ref|ZP_05443572.1| flagellar basal body rod protein FlgC [Brucella pinnipedialis
          M292/94/1]
 gi|256043071|ref|ZP_05446015.1| flagellar basal body rod protein FlgC [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256059610|ref|ZP_05449808.1| flagellar basal body rod protein FlgC [Brucella neotomae 5K33]
 gi|256111945|ref|ZP_05452896.1| flagellar basal body rod protein FlgC [Brucella melitensis bv. 3
          str. Ether]
 gi|256252926|ref|ZP_05458462.1| flagellar basal body rod protein FlgC [Brucella ceti B1/94]
 gi|256256600|ref|ZP_05462136.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 9
          str. C68]
 gi|256262867|ref|ZP_05465399.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|260544339|ref|ZP_05820160.1| flagellar basal body rod protein [Brucella abortus NCTC 8038]
 gi|260564301|ref|ZP_05834786.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str.
          16M]
 gi|260757028|ref|ZP_05869376.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 6
          str. 870]
 gi|260762844|ref|ZP_05875176.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 2
          str. 86/8/59]
 gi|260882838|ref|ZP_05894452.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 9
          str. C68]
 gi|261215657|ref|ZP_05929938.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 3
          str. Tulya]
 gi|261216790|ref|ZP_05931071.1| flagellar basal-body rod protein FlgC [Brucella ceti M13/05/1]
 gi|261220017|ref|ZP_05934298.1| flagellar basal-body rod protein FlgC [Brucella ceti B1/94]
 gi|261313738|ref|ZP_05952935.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis
          M163/99/10]
 gi|261319020|ref|ZP_05958217.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis
          B2/94]
 gi|261319657|ref|ZP_05958854.1| flagellar basal-body rod protein FlgC [Brucella ceti M644/93/1]
 gi|261323579|ref|ZP_05962776.1| flagellar basal-body rod protein FlgC [Brucella neotomae 5K33]
 gi|261749910|ref|ZP_05993619.1| flagellar basal-body rod protein FlgC [Brucella suis bv. 5 str.
          513]
 gi|265986977|ref|ZP_06099534.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis
          M292/94/1]
 gi|265989509|ref|ZP_06102066.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 1
          str. Rev.1]
 gi|265993392|ref|ZP_06105949.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 3
          str. Ether]
 gi|294853173|ref|ZP_06793845.1| flagellar basal-body rod protein FlgC [Brucella sp. NVSL 07-0026]
 gi|297249956|ref|ZP_06933657.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 5
          str. B3196]
 gi|17985310|gb|AAL54330.1| flagellar basal-body rod protein flgc [Brucella melitensis bv. 1
          str. 16M]
 gi|62197294|gb|AAX75593.1| FlgC, flagellar basal-body rod rotein FlgC [Brucella abortus bv.
          1 str. 9-941]
 gi|82939367|emb|CAJ12315.1| Flagellar basal body rod protein:Flagellar basal-body rod protein
          FlgC [Brucella melitensis biovar Abortus 2308]
 gi|163675067|gb|ABY39177.1| flagellar basal-body rod protein FlgC [Brucella suis ATCC 23445]
 gi|189020940|gb|ACD73661.1| Flagellar basal body rod protein [Brucella abortus S19]
 gi|225616469|gb|EEH13517.1| flagellar basal-body rod protein FlgC [Brucella ceti str. Cudo]
 gi|225642115|gb|ACO02028.1| flagellar basal-body rod protein FlgC [Brucella melitensis ATCC
          23457]
 gi|237787476|gb|EEP61692.1| flagellar basal-body rod protein FlgC [Brucella abortus str. 2308
          A]
 gi|255997600|gb|ACU49287.1| flagellar basal body rod protein [Brucella microti CCM 4915]
 gi|260097610|gb|EEW81484.1| flagellar basal body rod protein [Brucella abortus NCTC 8038]
 gi|260151944|gb|EEW87037.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str.
          16M]
 gi|260673265|gb|EEX60086.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 2
          str. 86/8/59]
 gi|260677136|gb|EEX63957.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 6
          str. 870]
 gi|260872366|gb|EEX79435.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 9
          str. C68]
 gi|260917264|gb|EEX84125.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 3
          str. Tulya]
 gi|260918601|gb|EEX85254.1| flagellar basal-body rod protein FlgC [Brucella ceti B1/94]
 gi|260921879|gb|EEX88447.1| flagellar basal-body rod protein FlgC [Brucella ceti M13/05/1]
 gi|261292347|gb|EEX95843.1| flagellar basal-body rod protein FlgC [Brucella ceti M644/93/1]
 gi|261298243|gb|EEY01740.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis
          B2/94]
 gi|261299559|gb|EEY03056.1| flagellar basal-body rod protein FlgC [Brucella neotomae 5K33]
 gi|261302764|gb|EEY06261.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis
          M163/99/10]
 gi|261739663|gb|EEY27589.1| flagellar basal-body rod protein FlgC [Brucella suis bv. 5 str.
          513]
 gi|262764262|gb|EEZ10294.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 3
          str. Ether]
 gi|263000178|gb|EEZ12868.1| flagellar basal-body rod protein FlgC [Brucella melitensis bv. 1
          str. Rev.1]
 gi|263092702|gb|EEZ16911.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|264659174|gb|EEZ29435.1| flagellar basal-body rod protein FlgC [Brucella pinnipedialis
          M292/94/1]
 gi|294818828|gb|EFG35828.1| flagellar basal-body rod protein FlgC [Brucella sp. NVSL 07-0026]
 gi|297173825|gb|EFH33189.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 5
          str. B3196]
 gi|326410333|gb|ADZ67397.1| flagellar basal body rod protein FlgC [Brucella melitensis M28]
 gi|326553625|gb|ADZ88264.1| flagellar basal body rod protein FlgC [Brucella melitensis M5-90]
          Length = 140

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI N       AD   Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTARTADTDPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|119775452|ref|YP_928192.1| flagellar basal body rod protein FlgC [Shewanella amazonensis
          SB2B]
 gi|119767952|gb|ABM00523.1| flagellar basal-body rod protein FlgC [Shewanella amazonensis
          SB2B]
          Length = 137

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN + +  +  S +  +   NI NAD
Sbjct: 1  MSLFNIFNVSGSGMSAQSVRLNTTASNIANAD 32



 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM-LQTL 475
            VN+ EE++ +I   +SY ++ ++      M +QTL
Sbjct: 98  NVNVMEEMADMISASRSYQMNVQVADTAKSMLMQTL 133


>gi|255028363|ref|ZP_05300314.1| flagellar basal body rod protein FlgG [Listeria monocytogenes LO28]
          Length = 217

 Score = 45.0 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/210 (7%), Positives = 41/210 (19%), Gaps = 15/210 (7%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R        P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETSQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQK 200
           ++V D       +  +  +    + ++ + 
Sbjct: 183 SLVKDGEGRLHINGVNTMNLPAGQGIIQKW 212


>gi|228984828|ref|ZP_04145000.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228775026|gb|EEM23420.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 137

 Score = 45.0 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|297585403|ref|YP_003701183.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10]
 gi|297143860|gb|ADI00618.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10]
          Length = 277

 Score = 45.0 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 54/203 (26%), Gaps = 10/203 (4%)

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
               R   +    N  D           E   + G           D     +       
Sbjct: 79  TPNFRQGDLMETTNSTDIALLQGETPMDEDSGLPGMLAFQIQNDDGDIRYTRNGDFTVDS 138

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              + +   +    +        ++ F  N        D    +    +   I DP   +
Sbjct: 139 DGFLTMGTGHYVLDTDGAPIEVGNEDFRVNQNGEIFTDDADEVFLGQIDIMLIPDPGLLV 198

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
                 L Y          +  ++    + +  V   + + Y     V+  + ++ ++  
Sbjct: 199 KEGSGFLRY----------DGDEAIASAIGNDDVLYQLQQGYLERSNVDAGQTMTQMMAA 248

Query: 455 EQSYNISNKLIMFTDKMLQTLLE 477
            +++  + K++   D+ L+  + 
Sbjct: 249 LRNFEANQKVLQAYDQSLERAVN 271



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 11/35 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A     +  +    +  NI N +   + 
Sbjct: 1  MLRGLYTAGAGMISQQRNQEMLSNNIANVNTPGFK 35


>gi|24374760|ref|NP_718803.1| flagellar basal body rod protein FlgC [Shewanella oneidensis
          MR-1]
 gi|24349426|gb|AAN56247.1|AE015762_4 flagellar basal-body rod protein FlgC [Shewanella oneidensis
          MR-1]
          Length = 138

 Score = 45.0 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          M L  +F+ A +  +  S +  +   NI NAD
Sbjct: 1  MGLFNIFDVAGSGMSAQSLRLNTTASNIANAD 32



 Score = 41.2 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++      MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136


>gi|37679148|ref|NP_933757.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016]
 gi|320157108|ref|YP_004189487.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O]
 gi|37197890|dbj|BAC93728.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016]
 gi|319932420|gb|ADV87284.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O]
          Length = 249

 Score = 45.0 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGLPTRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        +  + + +  +             L+       
Sbjct: 60  ERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGL------TRNGNLKVDQNGLL 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 SNASG 118



 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM---LQTLLEG 478
            I         VN   E++ LI +++ + +  K++   ++M     +LL  
Sbjct: 198 QIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDKSSDSLLRM 248


>gi|311694359|gb|ADP97232.1| flagellar basal-body rod protein FlgC-like protein [marine
          bacterium HP15]
          Length = 149

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MSL ++F+ A +     S +  +   NI NA+ 
Sbjct: 1  MSLGSIFDIAGSGMTAQSLRLNTTASNIANAET 33



 Score = 37.7 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ ++   +S+ ++  ++     M+Q +L
Sbjct: 109 NVNVVEEMADMMSSSRSFQMNVDVMNTAKSMMQRIL 144


>gi|256833243|ref|YP_003161970.1| flagellar basal body rod protein [Jonesia denitrificans DSM
          20603]
 gi|256686774|gb|ACV09667.1| flagellar basal body rod protein [Jonesia denitrificans DSM
          20603]
          Length = 134

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 4/34 (11%), Positives = 10/34 (29%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+       A        +   ++  N+ N +  
Sbjct: 1  MTTFGAIGIASTGLTVNRKWLDAVSDNLANVNTV 34


>gi|226950051|ref|YP_002805142.1| flagellar basal body rod protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842618|gb|ACO85284.1| flagellar basal body rod protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 255

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
              N++DE+  +      +      +       F        +     G           
Sbjct: 69  SMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFHVDTRGYLV 128

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +      +                 +              VA  N   +L +  
Sbjct: 129 NDSGYNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFNDYNSLKKIG 188

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N                   Q +   + ++      VN+  E+  ++   +S+  + K+
Sbjct: 189 DNL------------FEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTTMRSFETNQKI 236

Query: 465 IMFTDKMLQTLLE 477
           +   D+ L   + 
Sbjct: 237 VQSIDETLGKTVN 249



 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 35/241 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +   +   +  +I  N+ NA    Y   +                      
Sbjct: 1   MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              I             N      ++             + F  ++           +  
Sbjct: 61  IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENN-------GRNYY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                       Y  N S   +     +            A  V       D    + ++
Sbjct: 114 TRDGHFHVDTRGYLVNDSGYNVMGINRNTG-------AREAIFVGNKTIGTDASGNISLN 166

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +  +  ++   ND    K    +       Q    + + + +   +  V N    ++ T
Sbjct: 167 GVPSYSFQVADFNDYNSLKKIGDNLFEGNNPQNINGIVRQNSLEKSNVNVTNEMVNMLTT 226

Query: 222 S 222
            
Sbjct: 227 M 227


>gi|261420741|ref|YP_003254423.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61]
 gi|319768411|ref|YP_004133912.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52]
 gi|261377198|gb|ACX79941.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61]
 gi|317113277|gb|ADU95769.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52]
          Length = 276

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 6/161 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  N+ NA+   Y               ++  R E++ +
Sbjct: 1   MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYK---ADAAAMRAFPELLMSRLEDQPI 57

Query: 63  FDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 A    + IG        + L       D         I  L D      +   +
Sbjct: 58  PTASRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDI-ALVDGQVPVDRASGQ 116

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                  + N +  V+        +        +E    + 
Sbjct: 117 RGALFFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWYVLD 157



 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 6/135 (4%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 +       +         +   +    +      N       VA      TL++
Sbjct: 142 SPDGYLTTQEGWYVLDANGERIPLSSERFSVRDDGTIIDENGTATRLGVAFAANPQTLVK 201

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                       RS +  L      V   + + +     V+++  ++ L+   +++  + 
Sbjct: 202 EGNGL------FRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYRTFEANQ 255

Query: 463 KLIMFTDKMLQTLLE 477
           K++   D+ L   + 
Sbjct: 256 KIVQAYDRSLDKAVN 270


>gi|221069321|ref|ZP_03545426.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1]
 gi|220714344|gb|EED69712.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1]
          Length = 246

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 34/141 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    N A+Q+ A +  N+ NA    +    +     P   T    R      
Sbjct: 1   MDRIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSVPLQGTGAGTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                     A    R L +    +   +                  S E    N +   
Sbjct: 61  TSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +   ++  +   
Sbjct: 121 VLSDGGAPIDIPPESTISLGS 141


>gi|91794994|ref|YP_564645.1| flagellar basal-body rod FlgF [Shewanella denitrificans OS217]
 gi|91716996|gb|ABE56922.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217]
          Length = 244

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 50/205 (24%), Gaps = 4/205 (1%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFD 64
              A +  +   +  +    N+ NA+   +        +   P  V              
Sbjct: 5   LYTAASGASRIMEAQSIRANNLANAETTGFKADLERVKSMALP-GVEASLSTRVLVQTQS 63

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                 S  +               +                +    E         +LG
Sbjct: 64  NGFSQQSGEMNHTGRNLDMAIRDRGLFTVMVDGGEAYTRAGAMIADAEGQLTVNGRPVLG 123

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADK-EIELEISNLRRFLSELTVVNDAIKFKTAS 183
                   E    F      +  + A+    +    +  +   L+ELT   D + +  A+
Sbjct: 124 IDGPMVLPEHKDLFVGEDGTISVLPAEGGVIQEVGRLKMVNPELNELTKGADGLLYPIAA 183

Query: 184 KHDAHDFLDQRDVLLQKISEIIGIS 208
              A D   Q D    + S +  +S
Sbjct: 184 GVLAADDGVQVDSGYLESSNVQAVS 208


>gi|297531535|ref|YP_003672810.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3]
 gi|297254787|gb|ADI28233.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3]
          Length = 276

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  N+ NA+   Y          P    ++  R E++ +
Sbjct: 1   MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFP---ELLMSRLEDQPI 57

Query: 63  FDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                 A    + IG        + L       D         I
Sbjct: 58  PTASRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDI 101



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 6/135 (4%)

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                 +       +         +   +    +      N       VA      TL++
Sbjct: 142 SPDGYLTTQEGWYVLDANGERIPLSSERFSVRDDGTIIDENGTATRLGVAFAANPQTLVK 201

Query: 403 YARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISN 462
                       RS +  L      V   + + +     V+++  ++ L+   +++  + 
Sbjct: 202 EGNGL------FRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYRTFEANQ 255

Query: 463 KLIMFTDKMLQTLLE 477
           K++   D+ L   + 
Sbjct: 256 KIVQAYDRSLDKAVN 270


>gi|331217535|ref|XP_003321446.1| hypothetical protein PGTG_02488 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300436|gb|EFP77027.1| hypothetical protein PGTG_02488 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 2239

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 107/391 (27%), Gaps = 12/391 (3%)

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE-SYSKNLSEDILGKT 126
              ++       L     L + +S++           ++   S +       S+      
Sbjct: 506 TTDTNQSSASDSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQKDLPAQTSDADQSSA 565

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
            +   +E+     T   +     + A+           +       +         S   
Sbjct: 566 GVSILDELSTARTTDTNQSSASTSPANMLSSNSSQQTEKTNHPQKDLPAQTTNTNQSSAS 625

Query: 187 AHDFLDQ--RDVLLQKISEIIGIST-IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
                D    D L  + S+ +G         +         T+  +     ++     S 
Sbjct: 626 DSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQQDLPAQTSDADQSSAGVSILDELST 685

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
             T+++NP+        +   ++  + +  +  Q     +P      ++ +     S   
Sbjct: 686 ARTTDTNPLSASAPPADTLSSNSSQQTEKTSHPQ---KDLPAQTTDTNQSSASDSLSGDA 742

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
                 +SE+   L       +  +   + +        Q  +  S L +  +       
Sbjct: 743 PLADTLSSESSQQLGHEAANTEKTSSPQKDLPAQTSDADQSSAGVSILDELSTARTTDTN 802

Query: 364 NVKNLAGYPDLINHYCDSFNKNFI--FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
                    ++++       +        +    TN      + +  G L  N S   + 
Sbjct: 803 QSSASTSPANMLSSNSSQQTEKTNHPQKDLPAQTTNTNQSSASDSLSGELGSNASQQPNT 862

Query: 422 ---HMKSQVVFNHISESYSNTVGVNLQEELS 449
                  Q +    S++  ++ GV++ +ELS
Sbjct: 863 EKTSSPQQDLPAQTSDADQSSAGVSILDELS 893



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 101/391 (25%), Gaps = 11/391 (2%)

Query: 68   HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS-LESYSKNLSEDILGKT 126
              +++       L     L + +S++           ++   S  +      S+      
Sbjct: 616  TTNTNQSSASDSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQQDLPAQTSDADQSSA 675

Query: 127  VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
             +   +E+     T    +      AD           +       +         S   
Sbjct: 676  GVSILDELSTARTTDTNPLSASAPPADTLSSNSSQQTEKTSHPQKDLPAQTTDTNQSSAS 735

Query: 187  AHDFLDQ--RDVLLQKISEIIG---ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                 D    D L  + S+ +G    +T   ++    +          +    I  E   
Sbjct: 736  DSLSGDAPLADTLSSESSQQLGHEAANTEKTSSPQKDLPAQTSDADQSSAGVSILDELST 795

Query: 242  SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            + T  +  +        + S+  S   +        +        Q+   +     +GS 
Sbjct: 796  ARTTDTNQSSASTSPANMLSSNSSQQTEKTNHPQKDLPAQTTNTNQSSASDSLSGELGSN 855

Query: 302  SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
            + + P    + +      A       +     I + +       ++ + L      +   
Sbjct: 856  ASQQPNTEKTSSPQQDLPAQTSDADQSSAGVSILDELS--TARTTDTNPLSASAPPADTL 913

Query: 362  LWNVKNLAGYPDLINHYCDSFNKNFIFD--PVAGINTNVTLLEYARNSIGW-LEKNRSDS 418
              N                        +      ++ +  L +   +     L    +++
Sbjct: 914  SSNSSQQTEKTSHPQKRLAGPKPPIQTNHRASDSLSGDAPLADTLSSESSQQLGHEAANT 973

Query: 419  HDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                   + +    S++  ++ GV++ +ELS
Sbjct: 974  EKTSSPQKDLPAQTSDADQSSAGVSILDELS 1004


>gi|225850273|ref|YP_002730507.1| flagellar basal-body rod protein FlgC [Persephonella marina
          EX-H1]
 gi|225645322|gb|ACO03508.1| flagellar basal-body rod protein FlgC [Persephonella marina
          EX-H1]
          Length = 136

 Score = 45.0 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 4/50 (8%), Positives = 13/50 (26%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD---NKN---YVRRDTMTTIS 46
          +      +         +      N+ N +    ++   Y R+  +    
Sbjct: 2  IFKGLEVSVTGMAAQRIRIDITSSNLANVNSTRTEDGQPYRRKVPVFQAV 51


>gi|149183418|ref|ZP_01861851.1| flagellar basal-body rod protein [Bacillus sp. SG-1]
 gi|148848863|gb|EDL63080.1| flagellar basal-body rod protein [Bacillus sp. SG-1]
          Length = 280

 Score = 45.0 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/268 (9%), Positives = 60/268 (22%), Gaps = 36/268 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--------------- 47
           +L  F    +   +  ++   +  N+ NA+   Y    +     P               
Sbjct: 1   MLRGFYTVASGMLSQQRKTEMLSNNLSNANTPGYKADRSSMKAFPEMLLALQGQQQNIPT 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM------------------ 89
           +N   +    +   +   V    +     Q  LQ  E L ++                  
Sbjct: 61  QNGLSLPISRQVGGLNSGVYMQETIPAFMQGDLQETERLTDIALVDGNIPADPETGLPGG 120

Query: 90  --MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS-AREVQ 146
              + +                  + Y  + S   +  T     +    NF  +    + 
Sbjct: 121 VFFTLEGADGAPRYTRNGNFTLDGQGYLTSASGLYVLDTEGQRIQLPSDNFKIAEDGRIL 180

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
               +  +       N  R   E   +      +  +                + S +  
Sbjct: 181 VDEVETGRLGTGFTVNANRLAKEGDGLFRTEDNEPLADAYNSGATFNMQQGFIERSNVDT 240

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             T+         + ++   L       
Sbjct: 241 ARTMTDMMTAYRAFEANQKILQAYDRSM 268



 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 3/59 (5%), Positives = 23/59 (38%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                 +     ++ + +     V+    ++ ++   +++  + K++   D+ ++  + 
Sbjct: 215 PLADAYNSGATFNMQQGFIERSNVDTARTMTDMMTAYRAFEANQKILQAYDRSMEKAVN 273


>gi|170725956|ref|YP_001759982.1| flagellar basal body rod protein FlgF [Shewanella woodyi ATCC
           51908]
 gi|169811303|gb|ACA85887.1| flagellar basal-body rod protein FlgF [Shewanella woodyi ATCC
           51908]
          Length = 247

 Score = 45.0 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/129 (7%), Positives = 27/129 (20%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R                  
Sbjct: 1   MDKLLYVAMSGAKQNMNALAVRANNLANANTDGFKADMEQARSMQAFGEGLPTRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N     +      +        + A++     +             L        +
Sbjct: 61  NPSANFSSGPIKTTGRDLDIAINGSGWIAVQGADGGEA------YTRSGSLSFDTSGLLR 114

Query: 117 NLSEDILGK 125
           N   + +  
Sbjct: 115 NDRGNPIMG 123



 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 22/50 (44%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +         VN  +E+  LI +++ + +  K++   ++M Q     ++
Sbjct: 196 AVESGAVEGSNVNAVDEMVSLIDIQRQFEMQVKMMKTAEEMDQASSSLMR 245


>gi|195953934|ref|YP_002122224.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933546|gb|ACG58246.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 253

 Score = 45.0 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVR 38
          +  +   ++   +  NI NAD   + +
Sbjct: 13 SGMSLEQRRLDVVANNIANADTPGFKK 39


>gi|213025696|ref|ZP_03340143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 93

 Score = 45.0 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 4/31 (12%), Positives = 8/31 (25%)

Query: 16 NASQQFASIVRNIENADNKNYVRRDTMTTIS 46
                  I  N+ N     + R+  +    
Sbjct: 1  AQQTNMDVIANNLANVSTNGFKRQRAVFEDL 31


>gi|306846280|ref|ZP_07478841.1| flagellar basal-body rod protein FlgC [Brucella sp. BO1]
 gi|306273275|gb|EFM55144.1| flagellar basal-body rod protein FlgC [Brucella sp. BO1]
          Length = 140

 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   I  NI NA +         Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLRIISENIANAQSTARTADADPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|255523680|ref|ZP_05390646.1| flagellar basal body rod protein [Clostridium carboxidivorans P7]
 gi|255512549|gb|EET88823.1| flagellar basal body rod protein [Clostridium carboxidivorans P7]
          Length = 259

 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 34/149 (22%), Gaps = 24/149 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           ++     A +       +   I  N+ NA    +   +                      
Sbjct: 1   MIRSLYTAVSGMITQEAKQDVITNNLANATTVGFKGDNLAVKKFDDVLLQNYDKIVGGKN 60

Query: 44  --TISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
              +           + N +     + +   A       + F A++     +   N    
Sbjct: 61  VRNVIGSISLGSKIDAVNTDFTQGNIESTDKATDFAIQGKGFFAVQRN---NGVDNGQYY 117

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDN 130
                   ++     N S D +    + N
Sbjct: 118 TRDGHFHVNINGILVNDSGDTVLGRNLQN 146


>gi|308068650|ref|YP_003870255.1| flagellar basal-body rod protein flgC [Paenibacillus polymyxa
          E681]
 gi|305857929|gb|ADM69717.1| Flagellar basal-body rod protein flgC [Paenibacillus polymyxa
          E681]
          Length = 150

 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 3/89 (3%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          M +   F+ + +       +   I  NI NA+     R       +            N+
Sbjct: 1  MKINNGFDISASALTAQRLRMDVISSNIANAET---TRAKVENGQAVPYRRKTVVLEPNQ 57

Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
          + F  VL A                ++E 
Sbjct: 58 SGFADVLKAQMEGSSTSAAGVKVSQIQED 86


>gi|322378390|ref|ZP_08052845.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1]
 gi|322380258|ref|ZP_08054478.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5]
 gi|321147295|gb|EFX41975.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5]
 gi|321149203|gb|EFX43648.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1]
          Length = 286

 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          + + +  A     +   +   I  N+ N +   + R D +   
Sbjct: 16 MTSGYYAATGGMVSEFNKLDQISNNLANLNTPGFKRDDVVVGD 58


>gi|34498342|ref|NP_902557.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum
          ATCC 12472]
 gi|34104196|gb|AAQ60555.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum
          ATCC 12472]
          Length = 136

 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 14/69 (20%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN--YVRRDTMTTISP------- 47
          MSL  +FN + +  +  S +   +  N+ NA     +    Y  R  + T  P       
Sbjct: 1  MSLSNLFNISGSALSAQSMRLNVVASNLANAESATSSTGQPYKGRHVVFTAVPVDAAQPQ 60

Query: 48 -ENVTVVTQ 55
             V V + 
Sbjct: 61 VAGVRVTSV 69



 Score = 40.0 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   ++Y  + +++     +LQ  L+ 
Sbjct: 97  NVNVVEEMADMIAASRAYQNNVEMMNTAKSLLQKTLQL 134


>gi|28211310|ref|NP_782254.1| flagellar basal body rod protein FlgG [Clostridium tetani E88]
 gi|28203750|gb|AAO36191.1| flagellar hook-basal body complex protein [Clostridium tetani E88]
          Length = 260

 Score = 45.0 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/182 (7%), Positives = 31/182 (17%), Gaps = 24/182 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT------------------ 44
           ++     A +       +   +  N+ N     +   +                      
Sbjct: 1   MIRGLYTAVSGMITEEAKQNVVTNNLANVTTPGFKSDNLSVKQFDDVLLYNYDKKVGNKN 60

Query: 45  ---ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                            N      +L     A       + F  ++         N    
Sbjct: 61  VRHDLGGLSMGSKIDEVNTYFQQGMLEKTDRATDFAIQGKGFFVVER---EGQGGNERLY 117

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
                   +   +  N S   +     D         NT    + K              
Sbjct: 118 TRNGHFYVNNRGFLVNDSGYNVIGRNNDTGAVEPIRLNTENFTLTKEGNILVDGNTTYTL 177

Query: 162 NL 163
            +
Sbjct: 178 QV 179



 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 1/181 (0%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           I   +         +       A   K       +G      +  +        R     
Sbjct: 74  IDEVNTYFQQGMLEKTDRATDFAIQGKGFFVVEREGQGGNERLYTRNGHFYVNNRGFLVN 133

Query: 358 SKKFLWNV-KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
              +      N  G  + I    ++F      + +   NT  TL      +   L K   
Sbjct: 134 DSGYNVIGRNNDTGAVEPIRLNTENFTLTKEGNILVDGNTTYTLQVADFQNYNDLRKVGH 193

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           D++  +         + ++      VN   E+  ++ V +++  + K+I   D  L   +
Sbjct: 194 DAYTGNNAVNSTDYIVKQNTLEKSNVNTIREMIEMMTVMRTFETNQKIIQSIDDTLGKAV 253

Query: 477 E 477
            
Sbjct: 254 N 254


>gi|320530444|ref|ZP_08031502.1| putative flagellar basal body rod protein FlgG [Selenomonas
           artemidis F0399]
 gi|320137277|gb|EFW29201.1| putative flagellar basal body rod protein FlgG [Selenomonas
           artemidis F0399]
          Length = 266

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 7/59 (11%), Positives = 18/59 (30%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                +       I +        ++  E+  LI   + Y   ++ +   D +L   + 
Sbjct: 202 PQEGARPTQATGTIEQGLLEMSNTSIVTEMVELINNYRVYEAGSRAVQTQDSLLDKAVN 260



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38
          +      A +     ++    I  N+ NA N  + R
Sbjct: 1  MWRGLYIAASGMITETKHTDMIANNLANASNTGFKR 36


>gi|310641541|ref|YP_003946299.1| flagellar basal-body rod protein flgc [Paenibacillus polymyxa
          SC2]
 gi|309246491|gb|ADO56058.1| Flagellar basal-body rod protein FlgC [Paenibacillus polymyxa
          SC2]
          Length = 150

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPEN 49
          M +   F+ + +       +   I  NI NA+             Y R+  +   +   
Sbjct: 1  MKINNGFDISASALTAQRLRMDVISSNIANAETTRAKVENGQAIPYRRKTVVLEPNQSG 59


>gi|149184208|ref|ZP_01862526.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21]
 gi|148831528|gb|EDL49961.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----RRDTMTTISPENVTVVTQRS 57
           +  + + A +    +      I  N+ NA+   +      +R       P     +    
Sbjct: 1   MDRLIHTALSGMRASMDSQRVIASNMANANTLGFRAELLDQRPVTIEGQPNEARAMQIAR 60

Query: 58  ENK-NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +M    +      +      Q+  A++                   L  S      
Sbjct: 61  VRGADMSSGQIIETGRNLDVAVTTQALMAVQ------AEDGTEAYTRRGDLSVSSTGLLV 114

Query: 117 NLSEDILGK 125
           N     +  
Sbjct: 115 NGEGRPVLG 123



 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 5/41 (12%), Positives = 16/41 (39%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         V   E L  +I+ ++ + +  K++    ++
Sbjct: 195 SLKTGALEQSNVKTTEVLVEMIEAQRLFAMRTKIVSTAKEI 235


>gi|154175290|ref|YP_001408541.1| flagellar basal body rod protein FlgC [Campylobacter curvus
          525.92]
 gi|112803036|gb|EAU00380.1| flagellar basal-body rod protein FlgC [Campylobacter curvus
          525.92]
          Length = 167

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS L  F+ +    +    +   I  NI NA      +   Y R++ +   
Sbjct: 1  MSYLNDFDISGYGLSAQRFRMNVISSNIANAQTTRTAEGGPYRRQEVIFKA 51


>gi|264676571|ref|YP_003276477.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni
           CNB-2]
 gi|262207083|gb|ACY31181.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni
           CNB-2]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 34/141 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    N A+Q+ A +  N+ NA    +    +     P   +    R      
Sbjct: 1   MDKIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                     A    R L +    +   +                  S E    N +   
Sbjct: 61  TSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +   ++  +   
Sbjct: 121 VLSDGGAPIDIPPESTISLGS 141


>gi|304310785|ref|YP_003810383.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium HdN1]
 gi|301796518|emb|CBL44726.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium HdN1]
          Length = 145

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/143 (9%), Positives = 36/143 (25%)

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            ++        +    +     +                  +          +    G  
Sbjct: 1   MSLSSVFDIAGSGMSAQTVRLNTTSSNIANAESVASSVDKTYRARHPVFMAQYTAALGNR 60

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               L   A   +  +    S +               + Y     VN+ EE++ +I   
Sbjct: 61  PTDPLTGKANAGVDVVGIVESQAPLQLRYEPDHPYADEKGYVAYPNVNVVEEMTNMISAS 120

Query: 456 QSYNISNKLIMFTDKMLQTLLEG 478
           +S+  +  ++    +ML  +L  
Sbjct: 121 RSFQTNADVMNSAKQMLSAVLNL 143



 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSL +VF+ A +  +  + +  +   NI NA
Sbjct: 1  MSLSSVFDIAGSGMSAQTVRLNTTSSNIANA 31


>gi|330445349|ref|ZP_08309001.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489540|dbj|GAA03498.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 249

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 7/130 (5%), Positives = 26/130 (20%), Gaps = 12/130 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQ----R 56
           +      A +              N+ N +   +    +   +  +              
Sbjct: 1   MDRALYLAMSGAKQDMYGMQVHANNLANVNTTGFRADLQQARSMQAYGEGMPSRVFSMAE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A+ +    +             L+       +
Sbjct: 61  RPGNDFAQGSVINTGRDLDVAIQGDGWLAVMDAKGQEA------YTRAGHLKIDQTGMLQ 114

Query: 117 NLSEDILGKT 126
           N +  +L   
Sbjct: 115 NSNGQLLLGQ 124



 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 21/41 (51%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +++       VN   E++ +I +++ + +  KL+   ++M
Sbjct: 198 TLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEEM 238


>gi|322432976|ref|YP_004210225.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9]
 gi|321165203|gb|ADW70907.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 30/129 (23%), Gaps = 6/129 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------VTVVTQR 56
           + +    A       +    +I  N+ N+    +  R T  +             +    
Sbjct: 1   MDSGLYAACTALMARTDALDTIANNLANSSTGGFRARHTTFSSVLAGSGRPLASQLNEAT 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +    +    L     ++ +                    + +       L+ S +    
Sbjct: 61  NSYGLLGGSHLDMQQGSLARTGSDLDVGIDGPGFLTVKTASGNAYTRNGSLQVSTQGQLI 120

Query: 117 NLSEDILGK 125
             + + +  
Sbjct: 121 TATGEPVLG 129


>gi|302383955|ref|YP_003819778.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194583|gb|ADL02155.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 245

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/166 (5%), Positives = 29/166 (17%), Gaps = 4/166 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61
           +        +      ++      NI NA+   +     +      +       R     
Sbjct: 1   MENAAYIGLSRQMTLRRELDIAANNIANAETTGFKVEQLLLGTEVGQRARNDAVRPGASF 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + D  +             ++ +   +                                 
Sbjct: 61  VLDNGVGRDFGQGALNETGRTLDFAIDGEGAFFKIQDGAGEAYTRDGAFTIDPTGQLVTK 120

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
           S   +         +  +   + A +    +  A            
Sbjct: 121 SGLPVLGDGGPIVVDPARGALSVAEDGTISQGGAALGTLSLARFDN 166



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 47/170 (27%), Gaps = 3/170 (1%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           + +  +            +    +               Y  + +F  D           
Sbjct: 64  NGVGRDFGQGALNETGRTLDFAIDGEGAFFKIQDGAGEAYTRDGAFTIDPTGQLVTKSGL 123

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
                G P +++    + +         G     TL     +++  L K+    +     
Sbjct: 124 PVLGDGGPIVVDPARGALSVAEDGTISQGGAALGTLSLARFDNLAVLSKDGDGLYRNASN 183

Query: 425 S---QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         + +       VN   E++ LI++ ++Y  + K+I     +
Sbjct: 184 APALDATGVQVRQGMLEGSNVNTLVEITNLIEITRAYERATKMIENVQDL 233


>gi|116250476|ref|YP_766314.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255124|emb|CAK06198.1| putative flagella associated protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 244

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 8/154 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT------VVTQR 56
           + +    + +      ++  +I  N+ N +   +   +                 V    
Sbjct: 1   MQSGLYVSLSSQMALEKRLTTIADNMANVNTTGFRATEVKFDEMVAATRNKLNTKVAFVS 60

Query: 57  SENKNMF--DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             N  +   +  L    + +       ++ AL          +   T   +    S+  Y
Sbjct: 61  QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGQVLTRDGRFTIKDTGELVSIRGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
               +     +      E  V       +  ++I
Sbjct: 121 PVLDAGGAPIQLNTTGGEPAVGTDGIIYQGGRQI 154


>gi|120554034|ref|YP_958385.1| flagellar basal body rod protein FlgF [Marinobacter aquaeolei VT8]
 gi|120323883|gb|ABM18198.1| flagellar basal-body rod protein FlgF [Marinobacter aquaeolei VT8]
          Length = 250

 Score = 44.6 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/137 (6%), Positives = 30/137 (21%), Gaps = 16/137 (11%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNYV------RRDTMTTISPENVTVVT 54
           +        +         A  +   N+ N +   +       R   +            
Sbjct: 1   MDKALYIGMSG--AKQNMLAQRAHANNLANVNTTGFKKDFAQARSMPVFGEHHPTRAYAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 ++    L      +        + A++  +  +             L+  +   
Sbjct: 59  TERPGTDLSPGALMETGRKLDVAVDGGGWLAVQNNLGEE------VFTRTGSLQVDVNGL 112

Query: 115 SKNLSEDILGKTVIDNA 131
            +  S +++       A
Sbjct: 113 VRLASGELVLGNGGPVA 129


>gi|317153716|ref|YP_004121764.1| flagellar basal-body rod protein FlgC [Desulfovibrio aespoeensis
          Aspo-2]
 gi|316943967|gb|ADU63018.1| flagellar basal-body rod protein FlgC [Desulfovibrio aespoeensis
          Aspo-2]
          Length = 145

 Score = 44.6 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 13/76 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M  +   +   +           I  N+ N       +   Y R+      +P       
Sbjct: 1  MDFMTALDIGASGLKAQRATLNVISMNMANMRTTKTLEGGPYQRKSVSFESTP------- 53

Query: 55 QRSENKNMFDKVLHAH 70
            S      +  L+  
Sbjct: 54 VYSPFDEAMNNQLNRE 69



 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           N+ EE++ ++   + Y  + + I    +M    L+ 
Sbjct: 108 NVVEEMTNMMNATRGYEANVQTIESVKQMFNKALQI 143


>gi|196044999|ref|ZP_03112232.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB108]
 gi|225863603|ref|YP_002748981.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB102]
 gi|229183936|ref|ZP_04311152.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BGSC 6E1]
 gi|196024001|gb|EDX62675.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB108]
 gi|225788684|gb|ACO28901.1| flagellar basal-body rod protein FlgC [Bacillus cereus 03BB102]
 gi|228599588|gb|EEK57192.1| Flagellar basal-body rod protein FlgC [Bacillus cereus BGSC 6E1]
 gi|324325762|gb|ADY21022.1| flagellar basal body rod protein FlgC [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 137

 Score = 44.6 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGANLYERRSVVLESN 50



 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V++  E++ ++  ++ Y  +  ++    KML   LE  +
Sbjct: 97  NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEIGR 136


>gi|319790422|ref|YP_004152055.1| flagellar basal-body rod protein FlgC [Thermovibrio ammonificans
          HB-1]
 gi|317114924|gb|ADU97414.1| flagellar basal-body rod protein FlgC [Thermovibrio ammonificans
          HB-1]
          Length = 135

 Score = 44.6 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 5/61 (8%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-----YVRRDTMTTISPENVTVVTQRS 57
          +      +         +      N+ NA++ +     Y RR  +     + V  V    
Sbjct: 2  IFKGLEVSVTGMLAQRVRMDVAASNLANANSVDDNGQPYRRRVPIFEAVLDEVNGVKTYR 61

Query: 58 E 58
           
Sbjct: 62 V 62


>gi|23499914|ref|NP_699354.1| flagellar basal body rod protein FlgC [Brucella suis 1330]
 gi|23463491|gb|AAN33359.1| flagellar basal-body rod protein FlgC [Brucella suis 1330]
          Length = 140

 Score = 44.6 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI N       AD   Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLCIVSENIANAQSTAKTADTDPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|329898292|ref|ZP_08272375.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium
          IMCC3088]
 gi|328920857|gb|EGG28300.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium
          IMCC3088]
          Length = 124

 Score = 44.6 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----TISPENVTVVTQRS 57
          + ++F   +      SQ+   + +NI NAD   +  RD          +     V T + 
Sbjct: 1  MNSIFGVHEQALVLKSQRLQVLAKNIANADTPGFKARDVDFKQVLAAQAGFGSLVTTHKR 60

Query: 58 ENKNMFDKV 66
            K      
Sbjct: 61 HLKTALSNQ 69


>gi|94264091|ref|ZP_01287890.1| Flagellar basal-body rod protein FlgC [delta proteobacterium
          MLMS-1]
 gi|93455507|gb|EAT05697.1| Flagellar basal-body rod protein FlgC [delta proteobacterium
          MLMS-1]
          Length = 144

 Score = 44.6 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M +L   N + +       +      N+ NA+     +   Y  +  +    P
Sbjct: 1  MDILTAMNISGSALKAERSRLNIASMNMANANTTRTVEGGPYRAKSVVFEARP 53


>gi|205375362|ref|ZP_03228152.1| flagellar basal-body rod protein [Bacillus coahuilensis m4-4]
          Length = 270

 Score = 44.6 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 10/107 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM--------TTISPENVTVVT 54
           +L     A +      ++  ++  N+ NA+   +    T              +      
Sbjct: 1   MLRGLYTAASGMIAQQRKTETLANNLANANTPGFKADQTSVRSFPEMLLMSVGQGTLPNQ 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
           QRS    +    L    S     + L    +  ++       +    
Sbjct: 61  QRSTIPQL--NSLQTSISTGVYVQELTPLLSQGDLFETGMKTDIGLY 105



 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 61/216 (28%), Gaps = 3/216 (1%)

Query: 265 SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
            +V +G +    +     +   Q  +     V   +          +     + + D   
Sbjct: 50  MSVGQGTLPNQQRSTIPQLNSLQTSISTGVYVQELTPLLSQGDLFETGMKTDIGLYDINV 109

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
                +   +     V+     N +   +G  V+    + +        L N      ++
Sbjct: 110 PQGGTVLYTVQGENGVSYTRNGNLTLDGNGSLVTSNGYYVLDTNGNTITLGNEDFTVNDQ 169

Query: 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKN---RSDSHDLHMKSQVVFNHISESYSNTVG 441
             I     G+           +++  +  +              + +     + +     
Sbjct: 170 GEIIQNGQGVAKLGVAYAADASTLRKIGTDLYESDGQLQNAYNVEGLQFQTVQGFLENSN 229

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           VN  + ++ ++   +S+  + KL+   DK L   + 
Sbjct: 230 VNESQTMTDMMTAYRSFEANQKLLQAYDKSLDKAVN 265


>gi|299531285|ref|ZP_07044695.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44]
 gi|298720692|gb|EFI61639.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 34/141 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    N A+Q+ A +  N+ NA    +    +     P   T    R      
Sbjct: 1   MDKIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSVPLQGTGAGTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                     A    R L +    +   +                  S E    N +   
Sbjct: 61  TSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +   ++  +   
Sbjct: 121 VLSDGGAPIDIPPESTISLGS 141


>gi|313894945|ref|ZP_07828504.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976398|gb|EFR41854.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 266

 Score = 44.6 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 7/59 (11%), Positives = 18/59 (30%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                +       I +        ++  E+  LI   + Y   ++ +   D +L   + 
Sbjct: 202 PQEGARPTQATGTIEQGLLEMSNTSIVTEMVELINNYRVYEAGSRAVQTQDSLLDKAVN 260



 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38
          +      A +     ++    I  N+ NA N  + R
Sbjct: 1  MWRGLYIAASGMITETKHTDMIANNLANASNTGFKR 36


>gi|254519398|ref|ZP_05131454.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA]
 gi|226913147|gb|EEH98348.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA]
          Length = 260

 Score = 44.6 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 20/41 (48%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           +++       VN+  E+  +I   +++  + K++   D+ L
Sbjct: 209 VTQGALEGSNVNISNEMVNMITTMRNFETNQKIVQTIDETL 249



 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 35/150 (23%), Gaps = 24/150 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +   +   +  +I  N+ NA+   +   +                      
Sbjct: 1   MIRSLYTAVSGLISLENRQNNITNNMSNANTTGFKGDNLSIKSFDEVMIQNRDKVVNGNN 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                          S +      ++             + F A++      ++ N    
Sbjct: 61  VVQKLGSISLGAEIDSVDTAFTQGLIKNTDKQTDFAIEGRGFFAIQR---QTNNGNEVIY 117

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA 131
                 +   + Y  N + D +     +  
Sbjct: 118 TRDGNFKVGNDGYLINTNSDRVLGMNKNTG 147


>gi|254502506|ref|ZP_05114657.1| flagellar basal-body rod protein FlgC [Labrenzia alexandrii
          DFL-11]
 gi|222438577|gb|EEE45256.1| flagellar basal-body rod protein FlgC [Labrenzia alexandrii
          DFL-11]
          Length = 136

 Score = 44.6 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 7/52 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI 45
          M L+     + +     + +   I  NI NA+      +   Y R+      
Sbjct: 1  MDLMKSLFISASGLKAQNGRMRVIAENIANANSTARTPDEEPYRRKIPTFQS 52



 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     V+   E + + + ++SY  +  +I  T KMLQ  ++ ++
Sbjct: 88  ENGYVLQPNVSTLVESADMREAQRSYEANLNVIETTRKMLQRTIDILR 135


>gi|328545507|ref|YP_004305616.1| flagellar basal-body rod protein FlgC [polymorphum gilvum
          SL003B-26A1]
 gi|326415248|gb|ADZ72311.1| Flagellar basal-body rod protein FlgC [Polymorphum gilvum
          SL003B-26A1]
          Length = 138

 Score = 44.6 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          L A    + +     S++   +  N+ NA +         Y R+      
Sbjct: 5  LAATLKISASGLQAQSERLRVVSENLANAQSTGKTKGADPYARKTITFES 54



 Score = 36.5 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            VNL  E++ + +  +SY  + K++     M
Sbjct: 98  NVNLLVEMADMRETNRSYEANLKMMTQARTM 128


>gi|114566383|ref|YP_753537.1| flagellar basal body rod protein [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
 gi|114337318|gb|ABI68166.1| flagellar basal body rod protein [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 155

 Score = 44.6 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 11/82 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KN-YVRRDTMTTISPENVTVV 53
          M  L   + + +       +  +I  N+ N +          Y R+  +           
Sbjct: 1  MGFLNSIDTSASGLTAQRLRMDTIASNMANVETTRVDNRTGPYRRQVVVFEAR----NAS 56

Query: 54 TQRSENKNMFDKVLHAHSSAIG 75
            +   +   ++     ++A  
Sbjct: 57 APKKRFQRFLEEQSQTFNAANS 78



 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLI 465
            VN+ EE+  +I   ++Y  + ++I
Sbjct: 116 NVNIVEEMINMISATRAYEANAQVI 140


>gi|266621921|ref|ZP_06114856.1| flagellar basal-body rod protein FlgB [Clostridium hathewayi DSM
           13479]
 gi|288866394|gb|EFC98692.1| flagellar basal-body rod protein FlgB [Clostridium hathewayi DSM
           13479]
          Length = 118

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 12/104 (11%)

Query: 1   MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------TISPENVTV 52
           M L   A F   Q+  +    +      NI N +   +  +                   
Sbjct: 1   MPLFEDAAFRALQSGLDAMWLKQQVAGHNIANVETPGFKAKKVEFKQVLKEAADGSGPVY 60

Query: 53  VTQRSENKNMFD----KVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                 + +         +      +   +    + A+   MS 
Sbjct: 61  KAVVGTDNDTEARPDGNNVQVEKEELDLWKAYTEYSAMTSRMSG 104


>gi|161620234|ref|YP_001594120.1| flagellar basal body rod protein FlgC [Brucella canis ATCC 23365]
 gi|254702574|ref|ZP_05164402.1| flagellar basal body rod protein FlgC [Brucella suis bv. 3 str.
          686]
 gi|260568518|ref|ZP_05838987.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40]
 gi|261753154|ref|ZP_05996863.1| flagellar basal-body rod protein FlgC [Brucella suis bv. 3 str.
          686]
 gi|161337045|gb|ABX63349.1| flagellar basal-body rod protein FlgC [Brucella canis ATCC 23365]
 gi|260155183|gb|EEW90264.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40]
 gi|261742907|gb|EEY30833.1| flagellar basal-body rod protein FlgC [Brucella suis bv. 3 str.
          686]
          Length = 140

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI N       AD   Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLCIVSENIANAQSTARTADTDPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|257871286|ref|ZP_05650939.1| flagellar basal-body rod protein FlgB [Enterococcus gallinarum EG2]
 gi|257805450|gb|EEV34272.1| flagellar basal-body rod protein FlgB [Enterococcus gallinarum EG2]
          Length = 136

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 28/99 (28%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           LL  +N  +   N ++Q+   I  NI N +   Y  +  +     +     +        
Sbjct: 17  LLDTYNLLKTAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAATEA 76

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
               +    +      +  +   +   +   D   N   
Sbjct: 77  SVSQVKPKITENATTSIKDNGNNVDLEVEMLDQAANGLY 115


>gi|114762163|ref|ZP_01441631.1| putative flagellar basal body rod protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545187|gb|EAU48190.1| putative flagellar basal body rod protein [Roseovarius sp.
           HTCC2601]
          Length = 237

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQRSENKNMFDKVLHAHSS 72
           ++   +  NI N     Y ++  + +          +V +      N +     L     
Sbjct: 17  REMRMVANNIANMATTGYRQQGVVFSEYVRQTDRDGSVAMTASHVRNTSFAQGSLTRTGG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
            +      + F  ++           +     +    + + +    S         D  +
Sbjct: 77  QLDLAIEGEGFFLVQTPAGERLTRAGNFASSSAGDLVTQDGHLVLDSGGAPVFIPPDATD 136

Query: 133 EVVQNFNTSARE 144
             +    T +  
Sbjct: 137 LAIGQDGTLSSN 148


>gi|256158120|ref|ZP_05456038.1| flagellar basal body rod protein FlgC [Brucella ceti M490/95/1]
 gi|265996637|ref|ZP_06109194.1| flagellar basal-body rod protein FlgC [Brucella ceti M490/95/1]
 gi|262550934|gb|EEZ07095.1| flagellar basal-body rod protein FlgC [Brucella ceti M490/95/1]
          Length = 140

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI N       AD   Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTARTADTDPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|149927799|ref|ZP_01916050.1| hypothetical protein LMED105_11310 [Limnobacter sp. MED105]
 gi|149823421|gb|EDM82652.1| hypothetical protein LMED105_11310 [Limnobacter sp. MED105]
          Length = 245

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 9/105 (8%), Positives = 24/105 (22%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
            +I  N+ N +   + ++      +P        RS                    R + 
Sbjct: 20  ENIANNLANVNTPGFRQQLMAFQSAPVTGEGSGSRSFAVETSIGFDTTPGQIQSTGREMD 79

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
                +   + +D   N         +   +          +  +
Sbjct: 80  VAIQGEGWFAVNDAKGNEAYTRNGSFQLDGQGNLVTQEGYSVIGS 124


>gi|85710165|ref|ZP_01041230.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1]
 gi|85688875|gb|EAQ28879.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1]
          Length = 247

 Score = 44.6 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 31/141 (21%), Gaps = 2/141 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A    + +  +   +  N+ NA    + R++  T           +       
Sbjct: 1   MDRLIYTALTGMDASMNRQRMVANNLANASTPGF-RKEVFTVTPSTLRDGSIEARSLAKG 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSA-DDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +      + +             E + A               LR +     +N    
Sbjct: 60  AVRSADMAPAKVNPTGQPLDIAVEGEALIAFQSPGGGEVYSRRGDLRVAPTGLLENGEGL 119

Query: 122 ILGKTVIDNAEEVVQNFNTSA 142
            +                T A
Sbjct: 120 PVLGESGAPVTVPAGFRVTVA 140



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 4/37 (10%), Positives = 13/37 (35%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                  V     L  +I  ++++    ++I    ++
Sbjct: 200 GALEGSNVETAGTLIDMIDAQRAFEQRARIIQTAGEL 236


>gi|197335019|ref|YP_002156699.1| flagellar basal-body rod protein FlgF [Vibrio fischeri MJ11]
 gi|197316509|gb|ACH65956.1| flagellar basal-body rod protein FlgF [Vibrio fischeri MJ11]
          Length = 249

 Score = 44.6 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +  +++ G        +      +  +             VN   E++ LI +++ + + 
Sbjct: 173 DLFKDTNGLFRSKNPGATFDADANITLL----SGALEGSNVNAVGEMTNLIDLQRQFEMQ 228

Query: 462 NKLIMFTDKM 471
            K++   ++M
Sbjct: 229 VKMMSTAEEM 238



 Score = 43.5 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRSNNLANVSTTGF-RADLEQARSMQAYGEGLPTRVFNMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     +      +        + ++ +    +             L+       
Sbjct: 60  ERPGSSFSQGSVITTGRDLDLTIEGDGWISVMDNTGREGL------TRAGNLKIDETGLL 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 MNGSG 118


>gi|327193034|gb|EGE59946.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512]
          Length = 138

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          L A    A +     S +   +  NI NA    D      Y R+      
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQ 53


>gi|268680292|ref|YP_003304723.1| flagellar basal-body rod protein FlgC [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268618323|gb|ACZ12688.1| flagellar basal-body rod protein FlgC [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 163

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          M+ L+ F+ +    +    +   I  NI NA+     +   Y R+D +    
Sbjct: 1  MAYLSSFDISSYGLSAQRFRMDLISSNIANANTTRTSEGGPYQRKDVVFKAV 52


>gi|75675326|ref|YP_317747.1| flagellar basal body rod protein FlgC [Nitrobacter winogradskyi
          Nb-255]
 gi|74420196|gb|ABA04395.1| Flagellar basal-body rod protein FlgC [Nitrobacter winogradskyi
          Nb-255]
          Length = 141

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
            + A +     + +   I  NI NA++         Y R+    + +
Sbjct: 11 SMSIATSGLRAQAGRMRVISENIANANSTAQAPGGDPYRRKVPTFSSA 58


>gi|237751239|ref|ZP_04581719.1| flagellar basal body rod protein FlgC [Helicobacter bilis ATCC
          43879]
 gi|229372605|gb|EEO22996.1| flagellar basal body rod protein FlgC [Helicobacter bilis ATCC
          43879]
          Length = 163

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          + F+ +    +    +   I  NI NA+     +   Y R++ + 
Sbjct: 4  STFDISGYGLSAQRVRVNVISANIANANTTRTDEGGPYRRQEVVF 48


>gi|225375315|ref|ZP_03752536.1| hypothetical protein ROSEINA2194_00940 [Roseburia inulinivorans DSM
           16841]
 gi|225212804|gb|EEG95158.1| hypothetical protein ROSEINA2194_00940 [Roseburia inulinivorans DSM
           16841]
          Length = 146

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 11/150 (7%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
           M+L   F+ + +       +  +I  NI N +         Y R+            V +
Sbjct: 1   MALFQAFDISASGMTAERFRMDTIAENIANVNTTRTEDGTPYRRKIVTFAEK----EVTS 56

Query: 55  QRSENKNMFDKVLHAHSSAIG-QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                +N   K +         ++     F    +  + D   N   ++        + +
Sbjct: 57  FSRYYQNARSKFVGNGVKVSSVKEDTETDFIMEYDPSNPDADENGYVSYPNVNTVTEMTN 116

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
                       T  + A+ + Q+  +  +
Sbjct: 117 LIDASRAYEANTTAFEAAKSIAQSGLSIGK 146


>gi|163750569|ref|ZP_02157807.1| flagellar basal-body rod protein FlgF [Shewanella benthica KT99]
 gi|161329724|gb|EDQ00713.1| flagellar basal-body rod protein FlgF [Shewanella benthica KT99]
          Length = 246

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/131 (7%), Positives = 27/131 (20%), Gaps = 12/131 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R                  
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKADMAQARSMQAFGEGLPTRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S + +     +      +        + A++     +             L        +
Sbjct: 61  SPSADFTAGPIKTTGRDLDIAVKGDGWIAVQSADGGEA------YTRSGSLSFDTTGLLR 114

Query: 117 NLSEDILGKTV 127
           N   + +    
Sbjct: 115 NDRGNPIMGDA 125



 Score = 40.0 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         VN   E+  LI +++ + +  K++   ++M
Sbjct: 196 TLESGAVEGSNVNAVSEMVALISIQRQFEMQVKMMKTAEEM 236


>gi|258512707|ref|YP_003186141.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479433|gb|ACV59752.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 403

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/177 (6%), Positives = 38/177 (21%), Gaps = 1/177 (0%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           +                  L +      +D                              
Sbjct: 217 VNYADANGRSGLAVTRDGALQLNAENVVVDAAGHAIAPLDAAGRVMVGGRIVVNPLYHGT 276

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                                 D+  +      +  ++ +VT L+        +      
Sbjct: 277 QIFSQSGTPVYDANGQPSFRVYDAQGQPVAGGRIGLVDADVTQLQPLGEGEYMVGG-SYQ 335

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
           +  +    +     +      +  VN+   ++ +++   +Y  + ++    D ML  
Sbjct: 336 AAAVEPLLRASTGRMVFGALESSNVNVAATMAQMMQALNAYEANQRVAQSVDSMLNV 392


>gi|15606427|ref|NP_213807.1| flagellar biosynthesis FlgC [Aquifex aeolicus VF5]
 gi|6225342|sp|O67243|FLGC_AQUAE RecName: Full=Flagellar basal-body rod protein flgC
 gi|2983627|gb|AAC07195.1| flagellar biosynthesis FlgC [Aquifex aeolicus VF5]
          Length = 134

 Score = 44.6 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 4/52 (7%), Positives = 14/52 (26%), Gaps = 7/52 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA------DNKNYVRRDTMTTIS 46
          M +    + + +       +  ++  N+ N           + R   +    
Sbjct: 2  MDIFNALDISASGMYAQRIRMNTVASNLANYESFKSDGTP-FNRLVPVFEAV 52


>gi|254785373|ref|YP_003072802.1| flagellar basal body rod protein FlgF [Teredinibacter turnerae
           T7901]
 gi|237683950|gb|ACR11214.1| flagellar basal-body rod protein FlgF [Teredinibacter turnerae
           T7901]
          Length = 250

 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/183 (6%), Positives = 36/183 (19%), Gaps = 14/183 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           +      A +   +  +       N+ N +   +          P               
Sbjct: 1   MDKALYIAMSGAKHNMRAQTVHANNLANVNTTGFKADFARARSMPIYFGEGHPTRAYALE 60

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     L      +        F A++          +        L        
Sbjct: 61  EIPATDFRQGPLVETGRDLDVAVEGDGFIAVQ------SPDGSEAYTRAGSLFIDALGML 114

Query: 116 KNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN 174
           +  +   +       A     +   +    +  I      +  +++  ++        + 
Sbjct: 115 RTGNGLPVLGNGGPIAIPAAEKVEISGDGSITVIALGQGVDAPVQVDRIKLVNPPTDTIQ 174

Query: 175 DAI 177
             I
Sbjct: 175 RGI 177


>gi|238924172|ref|YP_002937688.1| flagellar basal body rod protein [Eubacterium rectale ATCC 33656]
 gi|238875847|gb|ACR75554.1| flagellar basal body rod protein [Eubacterium rectale ATCC 33656]
 gi|291524901|emb|CBK90488.1| flagellar basal-body rod protein FlgC [Eubacterium rectale DSM
           17629]
          Length = 146

 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 36/140 (25%), Gaps = 23/140 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT---------- 44
           M L   FN + +       +   I +NI N +  +      Y R+    +          
Sbjct: 1   MGLFQAFNISASGMTAERFRTDIIAQNIANVNTTSTKEGTPYRRKIVTFSEKNVTPFSQI 60

Query: 45  -------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V +  S+    F K     +        +            +    
Sbjct: 61  YSSSKKAAVGNGVKVSSVTSDYSTDFIKEYDPSNPDADADGYVSYPNVNTVTEMTNLIDA 120

Query: 98  NSPTHYISKLRDSLESYSKN 117
                  +   ++ +S ++N
Sbjct: 121 TRAYEANATAFEASKSMAQN 140


>gi|157376215|ref|YP_001474815.1| flagellar basal body rod protein FlgF [Shewanella sediminis
           HAW-EB3]
 gi|157318589|gb|ABV37687.1| flagellar basal-body rod protein FlgF [Shewanella sediminis
           HAW-EB3]
          Length = 247

 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/129 (8%), Positives = 26/129 (20%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R                  
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S + N     +      +        + A++                   L        +
Sbjct: 61  SPSANFASGPIKTTGRDLDVAVKGDGWIAVQ------AGDGGEAYTRSGSLSFDTTGLLR 114

Query: 117 NLSEDILGK 125
           N   + +  
Sbjct: 115 NDRGNPVMG 123



 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         VN  +E+  LI +++ + +  K++   ++M
Sbjct: 197 VESGAVEGSNVNAVDEMVNLIDIQRQFEMQVKMMKTAEEM 236


>gi|42524765|ref|NP_970145.1| flagellar basal-body rod protein [Bdellovibrio bacteriovorus
          HD100]
 gi|39576975|emb|CAE78204.1| flagellar basal-body rod protein [Bdellovibrio bacteriovorus
          HD100]
          Length = 147

 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 6/78 (7%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVTQRS 57
          L     + +       +  +I  NI N +     +   Y R+D +    P+        S
Sbjct: 5  LTGMRISSSGMAAQRMRMNTIASNIANINTTQTPEGGPYRRKDVVFEAMPDAKNFGEIIS 64

Query: 58 ENKNMFDKVLHAHSSAIG 75
                       +  I 
Sbjct: 65 STDPAGSFQRVQVTDVIS 82


>gi|222095395|ref|YP_002529455.1| flagellar basal body rod protein flgg [Bacillus cereus Q1]
 gi|221239453|gb|ACM12163.1| flagellar basal-body rod protein [Bacillus cereus Q1]
          Length = 267

 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 37/170 (21%), Gaps = 18/170 (10%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L                + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGANGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
            + + Y +  S   +     +  +         +   +  R   D  ++ 
Sbjct: 120 INSDRYLQTSSGAYVMDVNNERIKIPENVNFFVSNNGEIYREVNDGTLQK 169



 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 213 NGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 259


>gi|209547926|ref|YP_002279843.1| flagellar basal body rod protein FlgC [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209533682|gb|ACI53617.1| flagellar basal-body rod protein FlgC [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 138

 Score = 44.6 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          L A    A +     S +   +  NI NA    D      Y R+      
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQ 53


>gi|167770196|ref|ZP_02442249.1| hypothetical protein ANACOL_01539 [Anaerotruncus colihominis DSM
           17241]
 gi|167667518|gb|EDS11648.1| hypothetical protein ANACOL_01539 [Anaerotruncus colihominis DSM
           17241]
          Length = 254

 Score = 44.6 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/186 (6%), Positives = 31/186 (16%), Gaps = 18/186 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------S 46
           +L  F  A +      +    +  N+ NA    +     ++T                  
Sbjct: 1   MLRGFYTAASGVLMQERTLNVLTNNLVNARTPGFRASRVVSTTFEDEYLVRLEKGASGAI 60

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                V              L             + F  +                    
Sbjct: 61  GTGAPVRIVSDVPTLFDPSSLEETGRPYDLAINGEGFFNILTT--DAQGNERQYLTRNGN 118

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                E          +         +          ++   +     ++ + +      
Sbjct: 119 FDVDEEGMLVLRGHGQVLGEKGPIQLDTANFTVDYNGDIYNEKGKLVDKVLVTVPPQDAE 178

Query: 167 LSELTV 172
           L     
Sbjct: 179 LEVDAN 184


>gi|59712480|ref|YP_205256.1| flagellar basal body rod protein FlgF [Vibrio fischeri ES114]
 gi|24459278|gb|AAL86631.1| FlgF [Vibrio fischeri ES114]
 gi|59480581|gb|AAW86368.1| flagellar proximal rod protein FlgF [Vibrio fischeri ES114]
          Length = 249

 Score = 44.6 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +  +++ G        +      +  +             VN   E++ LI +++ + + 
Sbjct: 173 DLFKDTNGLFRSKNPGATFDADANITLL----SGALEGSNVNAVGEMTNLIDLQRQFEMQ 228

Query: 462 NKLIMFTDKM 471
            K++   ++M
Sbjct: 229 VKMMSTAEEM 238



 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 26/130 (20%), Gaps = 14/130 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRSNNLANVSTTGF-RADLEQARSMQAYGEGLPTRVFNMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     +      +        + ++ +    +             L+       
Sbjct: 60  ERPGSSFSQGSVITTGRDLDLTVEGDGWISVMDNTGREGL------TRAGNLKIDETGLL 113

Query: 116 KNLSEDILGK 125
            N S  ++  
Sbjct: 114 MNGSGHVVLG 123


>gi|2916790|emb|CAA11956.1| flagellar basal-body rod protein [Sinorhizobium meliloti]
          Length = 229

 Score = 44.6 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/175 (6%), Positives = 37/175 (21%), Gaps = 10/175 (5%)

Query: 15  NNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
               ++  ++  NI N++   +   +        +         ++   ++ L   + A+
Sbjct: 1   MALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEG--EEFLSTKTGAL 58

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
            +      F    +   + D           +   +       +    +           
Sbjct: 59  ARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKGYPVLDAG------- 111

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                       +I   AD  I      +          +        S      
Sbjct: 112 -GAPIQLNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSDMPAA 165


>gi|294140186|ref|YP_003556164.1| flagellar basal-body rod protein FlgF [Shewanella violacea DSS12]
 gi|293326655|dbj|BAJ01386.1| flagellar basal-body rod protein FlgF [Shewanella violacea DSS12]
          Length = 247

 Score = 44.6 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/129 (7%), Positives = 27/129 (20%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R                  
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKADMEQARSMQAFGEGLPTRVFAMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S + +     +      +        + A++     +             L        +
Sbjct: 61  SPSADFAAGPIKTTGRDLDIAVKGDGWIAVQSADGGEA------YTRSGSLSFDTTGLLR 114

Query: 117 NLSEDILGK 125
           N   + +  
Sbjct: 115 NDRGNPIMG 123



 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I         VN   E+  LI +++ + +  K++   ++M
Sbjct: 196 TIESGAVEGSNVNAVSEMVALIDIQRQFEMQVKMMKTAEEM 236


>gi|86357860|ref|YP_469752.1| flagellar basal body rod protein [Rhizobium etli CFN 42]
 gi|86281962|gb|ABC91025.1| probable flagellar basal body rod protein [Rhizobium etli CFN 42]
          Length = 101

 Score = 44.6 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          MS+  + N A +     + +  +I  N+ N+   +Y R +T  T         T
Sbjct: 1  MSISGITNIALSGVRAQTTRVGAIANNVANSSTPDYARLNTSLTTVASGGVQAT 54



 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 32/97 (32%)

Query: 384 KNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                  ++G+    T +    N++           +  + +       +        V+
Sbjct: 4   SGITNIALSGVRAQTTRVGAIANNVANSSTPDYARLNTSLTTVASGGVQATGNPTASDVD 63

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              EL+ L++ EQSY  +  +      M + L+   +
Sbjct: 64  PATELTNLLEAEQSYKANATVFETGADMWEMLMSIKR 100


>gi|254720612|ref|ZP_05182423.1| flagellar basal body rod protein FlgC [Brucella sp. 83/13]
 gi|265985652|ref|ZP_06098387.1| flagellar basal-body rod protein FlgC [Brucella sp. 83/13]
 gi|306838574|ref|ZP_07471411.1| flagellar basal-body rod protein FlgC [Brucella sp. NF 2653]
 gi|264664244|gb|EEZ34505.1| flagellar basal-body rod protein FlgC [Brucella sp. 83/13]
 gi|306406360|gb|EFM62602.1| flagellar basal-body rod protein FlgC [Brucella sp. NF 2653]
          Length = 140

 Score = 44.3 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI NA +         Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSAQSTRLRIVSENIANAQSTARTADADPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|288573035|ref|ZP_06391392.1| flagellar basal-body rod protein FlgC [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288568776|gb|EFC90333.1| flagellar basal-body rod protein FlgC [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 140

 Score = 44.3 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M +    + A +          +I +N+ N ++    +   YVRR  +   
Sbjct: 1  MRVFKSIDVAASSLTAHRLWMDTISQNLANVNSSRTPEGGPYVRRVPVFQQ 51


>gi|170743258|ref|YP_001771913.1| flagellar basal body rod protein FlgC [Methylobacterium sp. 4-46]
 gi|168197532|gb|ACA19479.1| flagellar basal-body rod protein FlgC [Methylobacterium sp. 4-46]
          Length = 136

 Score = 44.3 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTT 44
          M  +     A +     S +   I  NI NAD++        Y R+     
Sbjct: 1  MDFMKAIGIAASGLRAQSGRMRVISENIANADSEPTRAGVEPYRRKVPTFA 51



 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VNL  E   + + ++SY  +  ++    +M+   ++ +K
Sbjct: 96  NVNLLVETVDMREAQRSYEANLNMVTAARRMISRTIDILK 135


>gi|86150218|ref|ZP_01068445.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218562507|ref|YP_002344286.1| lagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839334|gb|EAQ56596.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112360213|emb|CAL35008.1| putative flagellin [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315929505|gb|EFV08699.1| putative flagellin [Campylobacter jejuni subsp. jejuni 305]
          Length = 750

 Score = 44.3 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 116/388 (29%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++    +  + ++   +           D +   + D         +      +K     
Sbjct: 365 NNGDITNLNNPVTIQINGQNFEIDLKQTDFIKSKMTDTDGNAANGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            + +    T     +        +     S  +T       I          + +     
Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           +        +  + ++    +   +            +S     + ++D           
Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T+   P +  + +        +   + ++ ++       N   DS ++N     + 
Sbjct: 605 TTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +    ++ ++  +  ++    SN + V+  E +  L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|254473360|ref|ZP_05086757.1| flagellar basal body rod protein [Pseudovibrio sp. JE062]
 gi|211957476|gb|EEA92679.1| flagellar basal body rod protein [Pseudovibrio sp. JE062]
          Length = 241

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 35/127 (27%), Gaps = 12/127 (9%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMF 63
               + +      ++  ++ RN+ N +   Y   +              VT  S  +N  
Sbjct: 5   SLYVSLSGQMALERRLETVARNVANMETAGYRADEVKFDSLVKRPGKDPVTFASTGENYI 64

Query: 64  DKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
            +    +    +++        +             N        + +  ++   +++  
Sbjct: 65  SRQAGAIKQTGNSLDVAIEGSGWL-------GIQTGNGVAYTRDGRFQIGVDGILRSIEG 117

Query: 121 DILGKTV 127
           + +  + 
Sbjct: 118 NPVLDSG 124


>gi|197104391|ref|YP_002129768.1| flagellar basal-body rod protein FlgC [Phenylobacterium zucineum
          HLK1]
 gi|196477811|gb|ACG77339.1| flagellar basal-body rod protein FlgC [Phenylobacterium zucineum
          HLK1]
          Length = 138

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 7/69 (10%)

Query: 9  KAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQRSENKN 61
           A +       +   I  N+ NA++         Y R+  +   +         R     
Sbjct: 12 IAASALRAQQARMRIIAENLANANSTAKVPGGDPYRRQAPVFEPTRVAGAAQGVRMSRVE 71

Query: 62 MFDKVLHAH 70
                   
Sbjct: 72 PDQSAFRME 80


>gi|157961172|ref|YP_001501206.1| flagellar basal body rod protein FlgF [Shewanella pealeana ATCC
           700345]
 gi|157846172|gb|ABV86671.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC
           700345]
          Length = 247

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/129 (8%), Positives = 26/129 (20%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           +  +   A +         A    N+ NA+   +                +  R      
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTE 60

Query: 59  --NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
             + N     +      +        + A++                   LR       +
Sbjct: 61  TPSANFASGPIKTTGRDLDIAVKGDGWIAVQ------AENGGEAYTRSGSLRFDNSGVLR 114

Query: 117 NLSEDILGK 125
           N     +  
Sbjct: 115 NDKGTAVMG 123


>gi|288958048|ref|YP_003448389.1| flagellar basal-body rod protein [Azospirillum sp. B510]
 gi|288910356|dbj|BAI71845.1| flagellar basal-body rod protein [Azospirillum sp. B510]
          Length = 136

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 7/50 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT 43
          M L      + +       +   I  N+ NA           Y R+  + 
Sbjct: 1  MDLYKSMAVSASGMKAQGTRLKVISENLANASTTAETPGDLPYRRKTVVF 50



 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E   + + ++SY  +   I    +ML   ++ ++
Sbjct: 96  NVNSVVEAMDMREAQRSYEANLSAIDTARQMLTRTIDILR 135


>gi|205356372|ref|ZP_03223137.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345757|gb|EDZ32395.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 750

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 35/413 (8%), Positives = 124/413 (30%), Gaps = 6/413 (1%)

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS---EDILGKTV 127
            +A  +   ++         +  +  N   T   + +  ++ +    +     D +   +
Sbjct: 340 QAAQDEGITMEDVTNRVMTAALGNPNNGDITKLNNPVTVTINNQQFTIDLKQTDFIKSKM 399

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
            D         +      +K        +   I     + ++ T +++ +   + +    
Sbjct: 400 TDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTL 459

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTS 247
           +  ++ +      ++  +  ST+   + +    T     +        +     S  +T 
Sbjct: 460 NLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITY 519

Query: 248 ESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307
                 I          + +     +        +  + ++    +   +          
Sbjct: 520 GQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVTD 579

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             +S     + ++D             + T+   P +  + +        +   + ++ +
Sbjct: 580 KLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDS 639

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           +       N   DS ++N     + G    +  L ++       +    +    ++ ++ 
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  ++    SN + V+  E +  L++V+ +Y  S K      ++  +LL  +
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|297538894|ref|YP_003674663.1| flagellar basal-body rod protein FlgC [Methylotenera sp. 301]
 gi|297258241|gb|ADI30086.1| flagellar basal-body rod protein FlgC [Methylotenera sp. 301]
          Length = 135

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKNYVRRDTMTTISPENV 50
          MSL  VFN + +  +  +Q+  ++  N+ NAD          Y  +  + + +P   
Sbjct: 1  MSLFNVFNISGSAMSAQAQRLNTVASNLANADSATSANGTP-YKAKQVVFSATPTGS 56



 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
            +     GS        +  +A      +    +    +    V    T     + +   
Sbjct: 4   FNVFNISGSAMSAQAQRLNTVASNLANADSATSANGTPYKAKQVVFSATPTGSPDASGVK 63

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  + ++ S +  ++     + N   + Y     VN+ EE+  +I   ++Y  + + +  
Sbjct: 64  VLKVIEDNSPAKVVYDPKHPLAN--DKGYVTMPNVNVTEEMVNMISASRAYQNNVETMNA 121

Query: 468 TDKML 472
              ML
Sbjct: 122 AKTML 126


>gi|83589620|ref|YP_429629.1| flagellar basal-body rod protein FlgB [Moorella thermoacetica
          ATCC 39073]
 gi|83572534|gb|ABC19086.1| flagellar basal-body rod protein FlgB [Moorella thermoacetica
          ATCC 39073]
          Length = 132

 Score = 44.3 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M L       +   + A+ +  +I  NI N +   + R       
Sbjct: 1  MFLTPTMYVLEKALDTATLRQRTIAHNIANVNTPGFKRYQVSFED 45


>gi|229189870|ref|ZP_04316880.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 10876]
 gi|228593544|gb|EEK51353.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 10876]
          Length = 267

 Score = 44.3 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 37/170 (21%), Gaps = 18/170 (10%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
            + + Y +  S   +     +            +   +  R   D  ++ 
Sbjct: 120 LNSDRYLQTSSGAYVMDVNNERIRIPENVEFFVSNNGEIYREVNDGTLQK 169



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 204 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 259


>gi|157415144|ref|YP_001482400.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386108|gb|ABV52423.1| putative flagellin [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747787|gb|ADN91057.1| Flagellin family protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 749

 Score = 44.3 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/354 (9%), Positives = 110/354 (31%), Gaps = 3/354 (0%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D         +      +K        +   I     + ++ T +++ +   + +   
Sbjct: 398 MTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTT 457

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +  ++ +      ++  +  ST+   + +    T              +     S  +T
Sbjct: 458 LNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPITHTDPATGNSGVVTGSNDIT 517

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                  I           ++     K      +++  + ++    +   +         
Sbjct: 518 YGQINDIIGMFAADKIPTQSITATNGKVDANGYNNLQQLMKDSQATVDVSMDYKGRISVT 577

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +S     + ++D       +     + ++   P +  + +        +   + ++ 
Sbjct: 578 DKLSSGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLVIDEPNVDIIKDLD 637

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++       N   DS +++     + G    +  L ++       +    +   D++ +S
Sbjct: 638 SMIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTTMGAYHNTIEDVNTRS 697

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  ++    SN + V+  E +  L++V+ +Y  S K      ++  +LL  +
Sbjct: 698 TFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQL--SLLNYM 749


>gi|56554379|pdb|1WLG|A Chain A, Crystal Structure Of Flge31, A Major Fragment Of The Hook
           Protein
 gi|56554380|pdb|1WLG|B Chain B, Crystal Structure Of Flge31, A Major Fragment Of The Hook
           Protein
 gi|60594453|pdb|2BGY|A Chain A, Fit Of The X-Ray Strucutre Of The Baterial Flagellar Hook
           Fragment Flge31 Into An Em Map From The Hook Of
           Caulobacter Crescentus.
 gi|60594454|pdb|2BGZ|A Chain A, Atomic Model Of The Bacterial Flagellar Based On Docking
           An X-Ray Derived Hook Structure Into An Em Map
          Length = 299

 Score = 44.3 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/282 (8%), Positives = 54/282 (19%), Gaps = 9/282 (3%)

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                     N                           + I   +T++   +        
Sbjct: 26  NGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQI 85

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                + VP    F   ++ +   +      D    + +      K K            
Sbjct: 86  NLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSS 145

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                     +  L  + +      G      G                     +    Q
Sbjct: 146 DPAATAPTTASTTLKFNENGILESGGTVNITTGTIN-------GATAATFSLSFLNSMQQ 198

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                + +    +  K        +     ++ +Y +   +      +A    N  L   
Sbjct: 199 NTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQ 258

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
             N   W     S    L       F  ++        V+L 
Sbjct: 259 GDNV--WAATQASGVALLGTAGSGNFGKLTNGALEASNVDLS 298


>gi|15615023|ref|NP_243326.1| flagellar basal body rod protein FlgC [Bacillus halodurans C-125]
 gi|10175080|dbj|BAB06179.1| flagellar basal-body rod protein [Bacillus halodurans C-125]
          Length = 152

 Score = 44.3 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+    N + +   +   +   I  N+ NA+  
Sbjct: 1  MSIFHGMNISGSALTSQRLRMDVISANMANAETT 34


>gi|118100954|ref|XP_417530.2| PREDICTED: similar to KIAA0833 protein [Gallus gallus]
          Length = 1640

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/359 (7%), Positives = 89/359 (24%), Gaps = 19/359 (5%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-----ELEISNLRRFLS 168
                S ++     ++  +    +  + +  +      AD         + ++++   LS
Sbjct: 303 LLHQNSTEVSSTNQVEVPDTTQNSPVSISSGLNSDPDMADSPAVTGVSSMAVASVMGSLS 362

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +   V  +     A    +      + +L    +    +  +  + +     T+  +   
Sbjct: 363 QSATVFMSEVTSEAVYTMSPTSGPNQHLLSSDAAAQGLVLAVSSDGHKFAFPTAASSESL 422

Query: 229 ETVPRDIN--FEKMNSYTVTSESNPIFIDGVV----VSSNQGSAVPKGKIKALLQIRDSV 282
             +P  ++       +     +     ++        +  QG     G +K      +  
Sbjct: 423 SMLPSTVSEELVLSTTLDGNRKIPETTMNFDPDCFLNNPKQGQTYGGGGMKGDSISTNIR 482

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                 +       L      +D       +            L      G+  +     
Sbjct: 483 QSPTTERSFNFNTTLTKEIKTEDTSFEQQMSKEAFSSTSASNTLTLTTGSGLLPSGGGLS 542

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLL 401
              +           +K +  +       P +      SF       P+         L 
Sbjct: 543 PSTTLEQMDFSAIDSNKDYSSSFNQTVQSPHVHQTPSPSFFLQDASKPLPLEQNTHNNLN 602

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           + + + +  +      +      +      +     +T   +L      L++ + ++  
Sbjct: 603 DTSGSFVNTIGIPSVKTESPSQTTSNCNGTVETRIESTS--SL-----QLMQFQANFQA 654


>gi|23009956|ref|ZP_00050814.1| COG1558: Flagellar basal body rod protein [Magnetospirillum
          magnetotacticum MS-1]
          Length = 136

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 7/52 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI 45
          M  +     A +     S +   I  NI NAD          Y R+      
Sbjct: 1  MDFMKSLGIAASGLKAQSGRMRIIAENIANADSTAKTAGGEPYRRKVPTFAS 52


>gi|326932261|ref|XP_003212238.1| PREDICTED: calmodulin-binding transcription activator 1-like
           [Meleagris gallopavo]
          Length = 1637

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/359 (7%), Positives = 89/359 (24%), Gaps = 19/359 (5%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-----ELEISNLRRFLS 168
                S ++     ++  +    +  + +  +      AD         + ++++   LS
Sbjct: 300 LLHQNSTEVSSTNQVEVPDTTQNSPVSISSGLNSDPDMADSPAVTGVSSMAVASVMGSLS 359

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +   V  +     A    +      + +L    +    +  +  + +     T+  +   
Sbjct: 360 QSATVFMSEVTSEAVYTMSPTSGPNQHLLSSDAAAQGLVLAVSSDGHKFAFPTTASSESL 419

Query: 229 ETVPRDIN--FEKMNSYTVTSESNPIFIDGVV----VSSNQGSAVPKGKIKALLQIRDSV 282
             +P  ++       +     +     ++        +  QG     G +K      +  
Sbjct: 420 SMLPSTVSEELVLSTTLDGNRKIPETTMNFDPDCFLNNPKQGQTYGGGGMKGDSISTNIR 479

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                 +       L      +D       +            L      G+  +     
Sbjct: 480 QSPTTERSFNFNTTLTKEIKTEDTSFEQQMSKEAFSSTSASNTLTLTTGSGLLPSGGGLS 539

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLL 401
              +           +K +  +       P +      SF       P+         L 
Sbjct: 540 PSTTLEQMDFSAIDSNKDYSSSFNQTVQSPHVHQTPSPSFFLQDASKPLPLEQNTHNNLN 599

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           + + + +  +      +      +      +     +T   +L      L++ + ++  
Sbjct: 600 DTSGSFVNTIGIPSVKTESPSQTTSNCNGTVETRIESTS--SL-----QLMQFQANFQA 651


>gi|296124187|ref|YP_003631965.1| flagellar basal-body rod protein FlgC [Planctomyces limnophilus
          DSM 3776]
 gi|296016527|gb|ADG69766.1| flagellar basal-body rod protein FlgC [Planctomyces limnophilus
          DSM 3776]
          Length = 137

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 4/32 (12%), Positives = 11/32 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          +    + + +       +  +I  NI N +  
Sbjct: 1  MFHTLDISTSGLIAQRTRMDTIAGNIANVNTT 32


>gi|315932630|gb|EFV11561.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 749

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/354 (9%), Positives = 110/354 (31%), Gaps = 3/354 (0%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D         +      +K        +   I     + ++ T +++ +   + +   
Sbjct: 398 MTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTT 457

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +  ++ +      ++  +  ST+   + +    T              +     S  +T
Sbjct: 458 LNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPITHTDPATGNSGVVTGSNDIT 517

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                  I           ++     K      +++  + ++    +   +         
Sbjct: 518 YGQINDIIGMFAADKIPTQSITATNGKVDANGYNNLQQLMKDSQATVDVSMDYKGRISVT 577

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +S     + ++D       +     + ++   P +  + +        +   + ++ 
Sbjct: 578 DKLSSGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLVIDEPNVDIIKDLD 637

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++       N   DS +++     + G    +  L ++       +    +   D++ +S
Sbjct: 638 SMIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTTMGAYHNTIEDVNTRS 697

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  ++    SN + V+  E +  L++V+ +Y  S K      ++  +LL  +
Sbjct: 698 TFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQL--SLLNYM 749


>gi|302387782|ref|YP_003823604.1| flagellar basal-body rod protein FlgC [Clostridium
          saccharolyticum WM1]
 gi|302198410|gb|ADL05981.1| flagellar basal-body rod protein FlgC [Clostridium
          saccharolyticum WM1]
          Length = 148

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          MS L+  N + +       +      NI N D         Y R+  +   
Sbjct: 1  MSFLSSMNISASAMTAQRLRLDIASENIANIDTTRTEAGGPYRRKMVVLEA 51


>gi|229029452|ref|ZP_04185535.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1271]
 gi|228731911|gb|EEL82810.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1271]
          Length = 257

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  TDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGISSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDTET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K    ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFALAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229


>gi|150390490|ref|YP_001320539.1| flagellar basal-body rod protein FlgB [Alkaliphilus
          metalliredigens QYMF]
 gi|149950352|gb|ABR48880.1| flagellar basal-body rod protein FlgB [Alkaliphilus
          metalliredigens QYMF]
          Length = 136

 Score = 44.3 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
           L +  N   +  + +  +  +I  NI NA+  N+ +       
Sbjct: 4  GLYSNINLLNSAMSASWVRNEAISNNIANANTPNFKKSTVEFET 47


>gi|254292906|ref|YP_003058929.1| flagellar basal-body rod protein FlgF [Hirschia baltica ATCC 49814]
 gi|254041437|gb|ACT58232.1| flagellar basal-body rod protein FlgF [Hirschia baltica ATCC 49814]
          Length = 255

 Score = 44.3 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 25/47 (53%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            +++ +  +  V+   E++ +I++ ++Y    KLI  ++ M +  + 
Sbjct: 203 TLAQGFVESSNVSAIVEMTQMIEISRAYQSVAKLISNSNDMREKAIN 249



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 8/129 (6%), Positives = 26/129 (20%), Gaps = 4/129 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT---MTTISPENVTVVTQRSEN 59
           +        +      ++      N+ N +   +          +  P   T        
Sbjct: 1   MDNSLAIGLSTQQLLRKKMDVTANNLANMNTTGFKVEHLVNHEISDRPARATDKPHDITF 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSKNL 118
              +      ++ +I Q                 +  N         +   + +      
Sbjct: 61  TQGWQLQRDMNNGSIAQTGNPLDVAIDGNGFFEVEAENGDIFYTRDGEFSMNPDGMLVTR 120

Query: 119 SEDILGKTV 127
           +  +L    
Sbjct: 121 NGYLLRGEG 129


>gi|221636059|ref|YP_002523935.1| flagellar basal-body rod protein FlgC [Thermomicrobium roseum DSM
          5159]
 gi|221158060|gb|ACM07178.1| flagellar basal-body rod protein FlgC [Thermomicrobium roseum DSM
          5159]
          Length = 151

 Score = 44.3 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M +L     + +       +      N+ N D         Y+RR  +   
Sbjct: 1  MGILETMRVSLSALTAQRVRMDVTASNLANVDTTRTPQGGPYLRRQVVFAT 51


>gi|297183135|gb|ADI19278.1| flagellar basal body rod protein [uncultured delta proteobacterium
           HF0200_39L23]
          Length = 258

 Score = 44.3 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/166 (6%), Positives = 27/166 (16%), Gaps = 20/166 (12%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL----------- 67
           ++  ++  N+ N     +             V  V  +SE +N                 
Sbjct: 16  KKIETVANNLANVSTVGFKEDQPSFREVLSTVQRVVPQSEEENFLSHEYLDEYVGMDKSA 75

Query: 68  --------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                   +  +                E                   +   +       
Sbjct: 76  VMVDEIGKNFTTGRFRDTGNELDLSLENEGFFTITTPQGDRYTRAGNFKLDSQGRMVTQD 135

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
              L        +             Q +      +    +    +
Sbjct: 136 GFPLLGK-KGPIQIKGNGPIQVDENGQVVVEGTIMDQLKTVRFRNQ 180


>gi|163852027|ref|YP_001640070.1| flagellar basal body rod protein FlgC [Methylobacterium
          extorquens PA1]
 gi|218530781|ref|YP_002421597.1| flagellar basal body rod protein FlgC [Methylobacterium
          chloromethanicum CM4]
 gi|240139294|ref|YP_002963769.1| flagellar basal-body rod protein flgC [Methylobacterium
          extorquens AM1]
 gi|254561750|ref|YP_003068845.1| flagellar basal-body rod protein flgC [Methylobacterium
          extorquens DM4]
 gi|163663632|gb|ABY30999.1| flagellar basal-body rod protein FlgC [Methylobacterium
          extorquens PA1]
 gi|218523084|gb|ACK83669.1| flagellar basal-body rod protein FlgC [Methylobacterium
          chloromethanicum CM4]
 gi|240009266|gb|ACS40492.1| flagellar basal-body rod protein flgC [Methylobacterium
          extorquens AM1]
 gi|254269028|emb|CAX24989.1| flagellar basal-body rod protein flgC [Methylobacterium
          extorquens DM4]
          Length = 136

 Score = 44.3 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 13/70 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTI------SP 47
          M  L     A +     S +   I  NI N    A       Y R+    T       + 
Sbjct: 1  MDFLKSLGIAASGLKAQSGRMRIIAENIANADSTAQTAGGDPYRRKIPTFTSRFDNELNA 60

Query: 48 ENVTVVTQRS 57
            V     R 
Sbjct: 61 SVVEAGRVRR 70


>gi|68164545|gb|AAY87274.1| predicted flagellar proximal rod protein [uncultured bacterium
           BAC17H8]
          Length = 251

 Score = 44.3 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +   +     VN+ EEL   I+ +++Y I+ K+I    ++
Sbjct: 200 VVAKHLELSNVNVTEELINSIEDQRAYEINVKMIASASEL 239


>gi|109899404|ref|YP_662659.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas
          atlantica T6c]
 gi|109701685|gb|ABG41605.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas
          atlantica T6c]
          Length = 140

 Score = 44.3 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI--------- 45
          MSL  V + A    +  S +  +   N+ NA++ +      Y  R  +            
Sbjct: 1  MSLFNVMDIASTGMSAQSVRLNTTASNVANANSVSSSYDQTYKARHPVFAAELQRASQDQ 60

Query: 46 -SPENVTVVTQ 55
           +   V V+  
Sbjct: 61 NAGTGVQVMGI 71


>gi|332305613|ref|YP_004433464.1| flagellar basal-body rod protein FlgC [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332172942|gb|AEE22196.1| flagellar basal-body rod protein FlgC [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 140

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI--------- 45
          MSL  V + A    +  S +  +   N+ NA++ +      Y  R  +            
Sbjct: 1  MSLFNVMDIASTGMSAQSVRLNTTASNVANANSVSSSYDQTYKARHPVFAAELQRASQDQ 60

Query: 46 -SPENVTVVTQ 55
           +   V V+  
Sbjct: 61 NAGTGVQVLGV 71


>gi|229102371|ref|ZP_04233079.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-28]
 gi|228681018|gb|EEL35187.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-28]
          Length = 267

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 34/162 (20%), Gaps = 18/162 (11%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNVQITNSATDF--FLDDGAAGTSSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
            + + Y +  S   +     +            +   +  R 
Sbjct: 120 LNSDRYLQTSSGAYVMDVNNERIRIPENVNFFVSNNGEIYRE 161



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 22/56 (39%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             + +       V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 204 AEGNIANLPNGTGIVKDHMLENSNVDMTKEMADLMSSQKMIQASQRIMTSFDKIYE 259


>gi|163789652|ref|ZP_02184090.1| Flagellar basal body rod protein FlgC [Carnobacterium sp. AT7]
 gi|159875184|gb|EDP69250.1| Flagellar basal body rod protein FlgC [Carnobacterium sp. AT7]
          Length = 145

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+        +  +    +  +I  NI N +  
Sbjct: 1  MSIFDSMQINASGLSLERLKLDTISTNIANVNTT 34



 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            E Y     VN+ +E+  ++   ++Y+ +   +  + +ML   L+ 
Sbjct: 97  EEGYVQQSNVNMADEMIDMMTTLRTYDANVTAMNASKEMLSKALQI 142


>gi|77918798|ref|YP_356613.1| flagellar basal-body rod protein FlgC [Pelobacter carbinolicus
          DSM 2380]
 gi|77544881|gb|ABA88443.1| flagellar basal-body rod protein FlgC [Pelobacter carbinolicus
          DSM 2380]
          Length = 143

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          M +      + +  +    +   I  N+ N       +   Y +RD +   S
Sbjct: 1  MDIFTAMQVSASALSAQRTRLNVISGNLANVGTTRTPEGGPYRKRDVVFQSS 52


>gi|33592477|ref|NP_880121.1| flagellar basal body rod protein FlgC [Bordetella pertussis
          Tohama I]
 gi|33572123|emb|CAE41665.1| flagellar basal-body rod protein FlgC [Bordetella pertussis
          Tohama I]
 gi|332381894|gb|AEE66741.1| flagellar basal body rod protein FlgC [Bordetella pertussis CS]
          Length = 139

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP------- 47
          MSLL++F  A +  +  SQ+      N+ NAD+        Y  R  +  ++P       
Sbjct: 1  MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPAGQAFG 60

Query: 48 ---ENVTVVTQRSENKNM 62
               V V     +    
Sbjct: 61 QEIGGVRVAGVVEDQSPF 78



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475
           + Y N   V+   E   +I   +SY  + +++    + ML+TL
Sbjct: 92  QGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTL 134


>gi|86146154|ref|ZP_01064480.1| polar flagellar FlgF [Vibrio sp. MED222]
 gi|218708805|ref|YP_002416426.1| flagellar basal body rod protein FlgF [Vibrio splendidus LGP32]
 gi|85836101|gb|EAQ54233.1| polar flagellar FlgF [Vibrio sp. MED222]
 gi|218321824|emb|CAV17794.1| Flagellar basal-body rod protein flgF [Vibrio splendidus LGP32]
          Length = 249

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRSNNLANVSTTGF-RADLAQARSMQAYGEGMPTRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        + ++ +    +             LR       
Sbjct: 60  ERPGHNFAQGSVVTTGRDLDVTIQGDGWISVMDNTGREGL------TRNGNLRVDQNGLL 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 TNASG 118



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            + +       VN   E++ LI +++ + +  K++   ++M
Sbjct: 198 TLLKGAIEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|309388814|gb|ADO76694.1| flagellar basal-body rod protein FlgB [Halanaerobium praevalens DSM
           2228]
          Length = 128

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-------ENVTVVTQRSEN 59
                     ++++   I  N+ N     Y R+D     +         +V++ T R  +
Sbjct: 4   LEIITRALAGSARRGELIANNLANVSTPGYKRQDIDFKSALKKEISAKNSVSLKTTRKNH 63

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
                K   + +     +       ++   +   +   NS  + +   R +
Sbjct: 64  LPF-SKQYRSLNGNENNRSYRNDDNSVDVDVEMAELAKNSIYYSVMSKRAA 113


>gi|91976162|ref|YP_568821.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris
           BisB5]
 gi|91682618|gb|ABE38920.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5]
          Length = 253

 Score = 44.3 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 9/131 (6%), Positives = 25/131 (19%), Gaps = 6/131 (4%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENV------TVVTQRSENKNMFDKVLHAHSS 72
           +Q   +  N+ N +   +    ++                  +R              S 
Sbjct: 17  RQMDVVANNLANINTNGFKAERSVFQEFLNTGAHEDNFQAQDRRVSFVQDRAAYHDFASG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
            + + +                           KL  + +    N S   +         
Sbjct: 77  PMEETKNPLDVAIDGSAFLVVQTPQGERYTRDGKLSINPQGQLVNASGYPVLGNSGPIVF 136

Query: 133 EVVQNFNTSAR 143
           +        + 
Sbjct: 137 QPTDKSINISS 147


>gi|319898635|ref|YP_004158728.1| flagellar basal-body rod protein flgC [Bartonella clarridgeiae
          73]
 gi|319402599|emb|CBI76144.1| Flagellar basal-body rod protein flgC [Bartonella clarridgeiae
          73]
          Length = 138

 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
          MS  L+A    A    +  S +   I  N+ NA++         Y R+      +
Sbjct: 1  MSDRLIAAEQIATTGLSAQSTRLRIIAENLANANSTGKSAGARPYQRKTVSFEAT 55


>gi|91202526|emb|CAJ72165.1| similar to flagellar basal-body rod protein FlgB [Candidatus
          Kuenenia stuttgartiensis]
          Length = 125

 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 4/22 (18%), Positives = 7/22 (31%)

Query: 23 SIVRNIENADNKNYVRRDTMTT 44
           +  NI N +   Y +      
Sbjct: 25 VVANNIANVNTPGYKKMVVNFE 46


>gi|15895409|ref|NP_348758.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum
           ATCC 824]
 gi|15025132|gb|AAK80098.1|AE007715_3 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC
           824]
          Length = 258

 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/152 (6%), Positives = 33/152 (21%), Gaps = 25/152 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +       +   I  N+ N +   +      +                   
Sbjct: 1   MVRGLYTAISGMVVQEAKQDVITNNLANTNTVGFKSDSLSSQSFEDVLIQNYSKRENGVP 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                              +     + A           + F  ++     ++  + +  
Sbjct: 61  ERTLLGTLNLGSRINDTATDFTGGNIQATDIDTDFAIQGRGFFTVR----KNNGSDQNYY 116

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                   +++ Y  + S D +  T +     
Sbjct: 117 TRNGHFHVNMDGYMLDDSGDYIMGTNLATNTT 148


>gi|261344144|ref|ZP_05971788.1| flagellar basal-body rod protein FlgC [Providencia rustigianii
          DSM 4541]
 gi|282567736|gb|EFB73271.1| flagellar basal-body rod protein FlgC [Providencia rustigianii
          DSM 4541]
          Length = 134

 Score = 44.3 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          M+LL++F+ + +     SQ+      N+ NA++        Y  +  +  ++P+    V 
Sbjct: 1  MALLSIFDISASALTAQSQRLNVSASNMANAESVAGPDGQPYRAKQVVFQMAPQGRHQVG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSELIED 70



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + Y     V+   E+   I   +SY  + +++     +LQ  L
Sbjct: 87  EKGYVQMPNVDTVGEMINTISASRSYQANLEVMNTAKTLLQKTL 130


>gi|291486215|dbj|BAI87290.1| flagellar basal-body rod protein [Bacillus subtilis subsp. natto
           BEST195]
          Length = 270

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/255 (7%), Positives = 64/255 (25%), Gaps = 16/255 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y                 + R+  + +
Sbjct: 1   MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK------------ADQGSMRAFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES----YSKNL 118
             ++     +   +  +      +            S       +  +L       +   
Sbjct: 49  LSRIESKSPAGTSRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPIDIALIENQVPMNAET 108

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +E+      +  A+ +  + +++    +  +   +    L        +           
Sbjct: 109 NENAALFYPVQTADGIRYSKSSTFSLNENNQLTINGRPVLSTDRQPITVDNENFTVSENG 168

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +   A     +    ++ +           + ND+     +    +          
Sbjct: 169 TVTTNGRTAGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVSYSLKQGVSELS 228

Query: 239 KMNSYTVTSESNPIF 253
            ++  +  +E    +
Sbjct: 229 NVDVTSAYTEMTEAY 243


>gi|254973909|ref|ZP_05270381.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-66c26]
 gi|255091295|ref|ZP_05320773.1| flagellar basal-body rod protein [Clostridium difficile CIP
          107932]
 gi|255312953|ref|ZP_05354536.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-76w55]
 gi|255515712|ref|ZP_05383388.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-97b34]
 gi|255648806|ref|ZP_05395708.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-37x79]
 gi|260682025|ref|YP_003213310.1| flagellar basal-body rod protein [Clostridium difficile CD196]
 gi|260685623|ref|YP_003216756.1| flagellar basal-body rod protein [Clostridium difficile R20291]
 gi|306518921|ref|ZP_07405268.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-32g58]
 gi|260208188|emb|CBA60522.1| flagellar basal-body rod protein [Clostridium difficile CD196]
 gi|260211639|emb|CBE01890.1| flagellar basal-body rod protein [Clostridium difficile R20291]
          Length = 105

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            ++  +   +  + +  +I  NI N + + Y R       +
Sbjct: 2  NTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYVTFEET 43


>gi|254504860|ref|ZP_05117011.1| flagellar basal-body rod protein FlgC [Labrenzia alexandrii
          DFL-11]
 gi|222440931|gb|EEE47610.1| flagellar basal-body rod protein FlgC [Labrenzia alexandrii
          DFL-11]
          Length = 138

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 9/54 (16%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          MS  L A    A +     S +   +  N+ NA +         Y R+      
Sbjct: 1  MSDPLSATLQIAASGLKAQSDRMRIVSENLANARSTGEASGDDPYRRKTITFES 54


>gi|90415321|ref|ZP_01223255.1| flagellar basal-body rod protein FlgB [marine gamma
          proteobacterium HTCC2207]
 gi|90332644|gb|EAS47814.1| flagellar basal-body rod protein FlgB [marine gamma
          proteobacterium HTCC2207]
          Length = 128

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 1  MSLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          M +    F   +   +  +++   + +NI NAD   +  RD        NV         
Sbjct: 2  MKMFDAAFGIHEKALDLRAKRMEVLSQNIANADTPGFKARDIDFKNVLNNVQQAGSIRTT 61

Query: 60 KNMFDKVLHAHSSAIGQQ 77
                   +  + +   
Sbjct: 62 HAAHVSQASSAGADMVYT 79


>gi|312879581|ref|ZP_07739381.1| flagellar basal-body rod protein FlgC [Aminomonas paucivorans DSM
          12260]
 gi|310782872|gb|EFQ23270.1| flagellar basal-body rod protein FlgC [Aminomonas paucivorans DSM
          12260]
          Length = 139

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 16/71 (22%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI--------- 45
          M +    + A +          ++  N+ N +         YVR+  +            
Sbjct: 1  MKVFRNIDVAGSALTAHRLWMDTVSSNLANVNTTRTPSGGPYVRKVPIFQEKLMEAMKGA 60

Query: 46 -SPENVTVVTQ 55
           S   V V   
Sbjct: 61 PSSSGVRVAEI 71



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E++ ++   ++Y  S  ++     +  + LE ++
Sbjct: 99  NVNVVREMADMLVASRAYEASVNVVETGKALWTSALEIMR 138


>gi|114320055|ref|YP_741738.1| flagellar basal-body rod protein FlgC [Alkalilimnicola ehrlichii
          MLHE-1]
 gi|114226449|gb|ABI56248.1| flagellar basal-body rod protein FlgC [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 151

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTIS 46
          MSL  VF+ + +  N    +  ++  N+ N++         Y  R  +    
Sbjct: 1  MSLFKVFDVSGSGMNAQQTRLNTVASNLANSETVAGSPEQAYRSRQPVFASV 52



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDK-MLQTL 475
             VN  EE++ +I   +SY  + +++  + + +LQTL
Sbjct: 110 SNVNPVEEMTNMISASRSYQNNVEVMNTSKELLLQTL 146


>gi|253681456|ref|ZP_04862253.1| flagellar basal-body rod protein FlgB [Clostridium botulinum D
          str. 1873]
 gi|253561168|gb|EES90620.1| flagellar basal-body rod protein FlgB [Clostridium botulinum D
          str. 1873]
          Length = 134

 Score = 44.3 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +      +++   I  NI N + K Y R       S
Sbjct: 17 KQSLKATAKRKNVINNNIANFNTKGYKRSYVTFEDS 52


>gi|121612548|ref|YP_001000562.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005495|ref|ZP_02271253.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249343|gb|EAQ72303.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 750

 Score = 44.3 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 116/388 (29%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++    +  + ++   +           D +   + D         +      +K     
Sbjct: 365 NNGDITNLNNPVTIQINGQNFEIDLKQTDFIKSKMTDTDGNAANGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            + +    T     +        +     S  +T       I          + +     
Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           +        +  + ++    +   +            +S     + ++D           
Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T+   P +  + +        +   + ++ ++       N   DS ++N     + 
Sbjct: 605 TTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +    ++ ++  +  ++    SN + V+  E +  L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|77359720|ref|YP_339295.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Pseudoalteromonas haloplanktis TAC125]
 gi|76874631|emb|CAI85852.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Pseudoalteromonas haloplanktis TAC125]
          Length = 143

 Score = 44.3 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MSL  VF+ A +  +  + +  +   NI NA+ 
Sbjct: 1  MSLYNVFDIAGSGMSAQNVRLNTTASNISNANT 33


>gi|149908758|ref|ZP_01897419.1| Hypothetical FlgF flagellar basal-body rod protein [Moritella sp.
           PE36]
 gi|149808300|gb|EDM68239.1| Hypothetical FlgF flagellar basal-body rod protein [Moritella sp.
           PE36]
          Length = 240

 Score = 44.3 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 36/142 (25%), Gaps = 6/142 (4%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVR---RDTMTTISPENVTV---VTQRSEN 59
           +   A +    +         N+ N +   +     R     I              +  
Sbjct: 3   LLYTALSGAEQSQTAMNIRANNLANVNTNGFKADIDRAVAYKIEGAGYETRYLSQSAASG 62

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            N     L     ++      + + A++    A+ +         S+ R S+   +   +
Sbjct: 63  TNFSAGKLEKTGRSLDIAIQGEGYIAVRTPGGAEAYTRAGSMTLDSEGRASINGNAVVAN 122

Query: 120 EDILGKTVIDNAEEVVQNFNTS 141
              L      + E       T+
Sbjct: 123 GAQLTFPEYQSIEIGSDGTVTA 144


>gi|85716543|ref|ZP_01047513.1| flagellar basal body rod protein [Nitrobacter sp. Nb-311A]
 gi|85696544|gb|EAQ34432.1| flagellar basal body rod protein [Nitrobacter sp. Nb-311A]
          Length = 141

 Score = 44.3 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
            + A +     + +   I  NI N    A       Y R+    + +
Sbjct: 11 SMSIATSGLRAQAGRMRVISENIANVDSTAQTPGGDPYRRKVPTFSSA 58


>gi|291529042|emb|CBK94628.1| flagellar basal-body rod protein FlgC [Eubacterium rectale M104/1]
          Length = 146

 Score = 44.3 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 36/140 (25%), Gaps = 23/140 (16%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT---------- 44
           M L   FN + +       +   I +NI N +  +      Y R+    +          
Sbjct: 1   MGLFQAFNISASGMTAERFRTDIIAQNIANVNTTSTKGGTPYRRKIVTFSEKNVTPFSQI 60

Query: 45  -------ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                       V V +  S+    F K     +        +            +    
Sbjct: 61  YSSSKKAAVGNGVKVSSVTSDYSTDFIKEYDPSNPDADADGYVSYPNVNTVTEMTNLIDA 120

Query: 98  NSPTHYISKLRDSLESYSKN 117
                  +   ++ +S ++N
Sbjct: 121 TRAYEANATAFEASKSMAQN 140


>gi|319764540|ref|YP_004128477.1| flagellar basal-body rod protein flgf [Alicycliphilus denitrificans
           BC]
 gi|317119101|gb|ADV01590.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans
           BC]
          Length = 246

 Score = 44.3 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    + A+ + A +  N+ N     +    +     P   +  T R      
Sbjct: 1   MDRIIYTSMTGASAAAHRQAVLANNLANVSTNGFRAEMSSFRSVPLQGSGSTTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +          R L +  A     +                  +        +   
Sbjct: 61  TSGHVETPGPVQRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTGLP 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +                T   
Sbjct: 121 VLSDGGAPITAPQGAELTLGA 141


>gi|90408061|ref|ZP_01216232.1| flagellar basal-body rod protein FlgF [Psychromonas sp. CNPT3]
 gi|90310818|gb|EAS38932.1| flagellar basal-body rod protein FlgF [Psychromonas sp. CNPT3]
          Length = 248

 Score = 44.3 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I         VN+  EL+ LI +++ +++  K++   ++M
Sbjct: 197 SIESGSLEASNVNMSSELTGLINLQRQFDMQVKMMKKAEEM 237



 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/120 (8%), Positives = 27/120 (22%), Gaps = 2/120 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   + +         A    N+ NA+   +         S +              
Sbjct: 1   MDRLLYISMSGAKENMNALAIHANNLANANKTGFK-SSFEQARSMQAYGEGLPTRVFSLA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSED 121
            +   +  S  +   +         E     D             L  + E +  + + +
Sbjct: 60  ENPGQNFESGILQMTQRDLDISIKGEGWFMVDSKMGGQAMTRAGGLNINPEGFLIDSTGN 119


>gi|240145509|ref|ZP_04744110.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis
          L1-82]
 gi|257202324|gb|EEV00609.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis
          L1-82]
 gi|291536000|emb|CBL09112.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis
          M50/1]
 gi|291538494|emb|CBL11605.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis
          XB6B4]
          Length = 146

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M L   F+ + +       +  +I +NI N +         Y R+      
Sbjct: 1  MGLFQAFDISASGMTAERFRMDTIAQNIANINTTRTEDGTPYRRKIVTFAE 51


>gi|218672513|ref|ZP_03522182.1| flagellar basal body rod protein FlgC [Rhizobium etli GR56]
          Length = 138

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          L A    A +     S +   +  NI NA    D      Y R+      
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQ 53


>gi|319787120|ref|YP_004146595.1| flagellar basal-body rod protein FlgF [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465632|gb|ADV27364.1| flagellar basal-body rod protein FlgF [Pseudoxanthomonas suwonensis
           11-1]
          Length = 249

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 27/130 (20%), Gaps = 12/130 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---SPENVTVVTQRSEN 59
           +      A      + Q  +++  N+ NAD   +      T                   
Sbjct: 1   MDKALYIAMTGARASLQAQSTVSHNLANADTAGFKAALANTEAFPVRGAGYPSRVAALHV 60

Query: 60  KNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
              FD     L    + +        + A++          +        L  +      
Sbjct: 61  DQGFDASAGALRVTGNPLDVSLHADRWLAVQ------APDGSEAYTRAGDLSLTPNGQLV 114

Query: 117 NLSEDILGKT 126
                 L   
Sbjct: 115 TSGGHALLGQ 124



 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 19/46 (41%)

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            Q     ++        V+    L  +I++++ + +  K+I   D+
Sbjct: 191 QQAPGTVMTTGALEESNVDAAGALVQMIQLQRQFEMQVKVIKTGDE 236


>gi|261407986|ref|YP_003244227.1| flagellar basal-body rod protein FlgC [Paenibacillus sp.
          Y412MC10]
 gi|329929277|ref|ZP_08283030.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. HGF5]
 gi|261284449|gb|ACX66420.1| flagellar basal-body rod protein FlgC [Paenibacillus sp.
          Y412MC10]
 gi|328936646|gb|EGG33089.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. HGF5]
          Length = 149

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          M++   F    +       +   I  NI NA+     R       +             +
Sbjct: 1  MNISNSFGINASALTAQRLRMDVISSNIANAET---TRARIENGQAVPYRRKTVVFQPQQ 57

Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
            F+ +L A  +     + ++  +  ++ 
Sbjct: 58 ESFEGLLRAQMNGQNAGQGVKVAQVREDQ 86


>gi|190890361|ref|YP_001976903.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
 gi|190695640|gb|ACE89725.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
          Length = 138

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          L A    A +     S +   +  NI NA    D      Y R+      
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQ 53


>gi|167623362|ref|YP_001673656.1| flagellar basal body rod protein FlgF [Shewanella halifaxensis
           HAW-EB4]
 gi|167353384|gb|ABZ75997.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis
           HAW-EB4]
          Length = 247

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 23/124 (18%), Gaps = 2/124 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +         A    N+ NA+   +           +              
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSM-QAFGEGLPTRVFSMT 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLSED 121
                +  S  I             +   A    N          LR       +N    
Sbjct: 60  ETPSANFSSGPIKTTGRDLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGT 119

Query: 122 ILGK 125
            +  
Sbjct: 120 PVMG 123


>gi|315179627|gb|ADT86541.1| flagellar basal-body rod protein FlgF [Vibrio furnissii NCTC 11218]
          Length = 243

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 34/127 (26%), Gaps = 6/127 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + ++   A +  +   +       N+ NAD   +      VR   +     +  T+V   
Sbjct: 1   MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSVPLQGSGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S         +      +    +   +  ++     + +              S+  ++ 
Sbjct: 61  SAATRFDSGDVVKTGRPLDVAVMGDGYLTVQTPEGGEAYTRAGNIAVDVNGALSINGFAV 120

Query: 117 NLSEDIL 123
                 L
Sbjct: 121 MGENGAL 127


>gi|260767924|ref|ZP_05876858.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972]
 gi|260615954|gb|EEX41139.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972]
          Length = 243

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 34/127 (26%), Gaps = 6/127 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + ++   A +  +   +       N+ NAD   +      VR   +     +  T+V   
Sbjct: 1   MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSVPLQGSGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S         +      +    +   +  ++     + +              S+  ++ 
Sbjct: 61  SAATRFDTGDVVKTGRPLDVAVMGDGYLTVQTPEGGEAYTRAGNIAVDVNGALSINGFAV 120

Query: 117 NLSEDIL 123
                 L
Sbjct: 121 MGENGAL 127


>gi|54308098|ref|YP_129118.1| flagellar basal body rod protein FlgF [Photobacterium profundum
           SS9]
 gi|46912524|emb|CAG19316.1| putative flagellar basal-body rod protein FlgF [Photobacterium
           profundum SS9]
          Length = 249

 Score = 44.3 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +  ++  G  +               +             VN   E++ +I +++ + + 
Sbjct: 173 DLFKDVNGLFKSKTPGVIYDADAGVTLLK----GALEGSNVNAVGEMTSMIDLQRHFEMQ 228

Query: 462 NKLIMFTDKMLQTLLEGVK 480
            K++   ++M Q     ++
Sbjct: 229 VKIMKTAEEMDQASASLLR 247



 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 14/126 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           +      A +          +   N+ N     + R D     S +              
Sbjct: 1   MDRALYLAMSGAKQDMYGMQTHANNLANVRTTGF-RADLEQARSMQAYGEGLPSRVFAMT 59

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               ++     +      +        + A+ +                  L+       
Sbjct: 60  ERPGQDFSQGSVMTTGRDLDVAIEGDGWLAVLDA------SGQEAYTRAGHLKIDETGML 113

Query: 116 KNLSED 121
           +N + +
Sbjct: 114 QNSNGN 119


>gi|172057891|ref|YP_001814351.1| flagellar basal-body rod protein FlgB [Exiguobacterium sibiricum
           255-15]
 gi|171990412|gb|ACB61334.1| flagellar basal-body rod protein FlgB [Exiguobacterium sibiricum
           255-15]
          Length = 120

 Score = 44.3 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 16  NASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIG 75
            A +    I  NI N D   Y  +  + +   ++   ++ +          +   SSA+ 
Sbjct: 20  AAQK---VISTNIANVDTPGYKAKRVVFSDVLDSEMKMSLKRHATIGTSGSIVEQSSAMR 76

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                   +     +S +     +    +++    ++S 
Sbjct: 77  NDGNGVDIDLEMSELSRNQIEYEALVEQLNRKFSGIQSV 115


>gi|226315011|ref|YP_002774907.1| flagellar basal-body rod protein [Brevibacillus brevis NBRC 100599]
 gi|226097961|dbj|BAH46403.1| flagellar basal-body rod protein [Brevibacillus brevis NBRC 100599]
          Length = 329

 Score = 43.9 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/343 (8%), Positives = 90/343 (26%), Gaps = 37/343 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     + +       +  S+  N+ N +   + +             V   R+  + +
Sbjct: 1   MIRGLYTSASGMLALQNRQESLANNLANINTPGFKQ------------DVGVMRAFPEQL 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             ++    +   G           +  +    +     +  +          ++N  +  
Sbjct: 49  LSRM----NDKEGLDVPGIPTMPGQPAIIGRLNTGVYMSEALPNFAQGDIEETRNPYDLA 104

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  +     +    S   ++     A+     +  ++R   +    VN      TA
Sbjct: 105 LMDNIQPDQNGNERRLFYSVARIE----QANLAQPAQQEDIRYTRNGNWSVNSDGYLVTA 160

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             +   D  +Q                 +R N+D  + T+ G  L  +   ++    ++ 
Sbjct: 161 EGYYVLDSSNQA----------------IRINHDPTLGTNVGQNLKISERGELMQVTIDP 204

Query: 243 YTVTSESNPI-FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
            T   +   +     + ++          +   + +    +     +  +   +  I + 
Sbjct: 205 ITKAEQYTALPTHARLGLAVVTDPQKLVREGTNVFRFEGDIAVEGIDLAEANDQAAITAG 264

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
           +   P           +      D    +   +S         
Sbjct: 265 TYNTPTVVGRFGTQQGWRERSNVDPAQTMTSMMSVLRAYEANQ 307



 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 24/61 (39%)

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +   +  + V      + +     V+  + ++ ++ V ++Y  + ++I   D  L+   
Sbjct: 262 TAGTYNTPTVVGRFGTQQGWRERSNVDPAQTMTSMMSVLRAYEANQRVITTIDGTLEKAA 321

Query: 477 E 477
            
Sbjct: 322 N 322


>gi|90411006|ref|ZP_01219020.1| putative flagellar basal-body rod protein FlgF [Photobacterium
           profundum 3TCK]
 gi|90328219|gb|EAS44530.1| putative flagellar basal-body rod protein FlgF [Photobacterium
           profundum 3TCK]
          Length = 249

 Score = 43.9 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +  ++  G  +               +             VN   E++ +I +++ + + 
Sbjct: 173 DLFKDVNGLFKSKTPGETYDADAGVTLLK----GALEGSNVNAVGEMTSMIDLQRHFEMQ 228

Query: 462 NKLIMFTDKMLQTLLEGVK 480
            K++   ++M Q     ++
Sbjct: 229 VKIMKTAEEMDQASASLLR 247



 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/126 (7%), Positives = 26/126 (20%), Gaps = 14/126 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           +      A +          +   N+ N     + R D     S +              
Sbjct: 1   MDRALYLAMSGAKQDMYGMQTHANNLANVRTTGF-RADLEQARSMQAYGEGLPSRVFAMT 59

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
               ++     +      +        + A+ +                  L+       
Sbjct: 60  ERPGQDFSQGSVMTTGRDLDVAVEGDGWLAVLDA------SGQEAYTRAGHLKIDETGML 113

Query: 116 KNLSED 121
           +N + +
Sbjct: 114 QNSNGN 119


>gi|304438469|ref|ZP_07398409.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon
          149 str. 67H29BP]
 gi|304368552|gb|EFM22237.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon
          149 str. 67H29BP]
          Length = 139

 Score = 43.9 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 13/40 (32%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
           + +      ++ +   +  NI N +  N+ R        
Sbjct: 11 IDVSSRAMAASTLRHEVLSNNIANVNTPNFKRSHVRFEDL 50


>gi|229096257|ref|ZP_04227230.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-29]
 gi|229115212|ref|ZP_04244622.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-3]
 gi|228668352|gb|EEL23784.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-3]
 gi|228687217|gb|EEL41122.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-29]
          Length = 267

 Score = 43.9 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 34/162 (20%), Gaps = 18/162 (11%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNVQITNSATDF--FLDDGAAGTSSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
            + + Y +  S   +     +            +   +  R 
Sbjct: 120 LNSDRYLQTSSGAYVMDVNNERIRIPENVNFFVSNNGEIYRE 161



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 204 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMSSQKMIQASQRIMTSFDKIYE 259


>gi|313901523|ref|ZP_07834970.1| flagellar basal-body rod protein FlgC [Thermaerobacter
          subterraneus DSM 13965]
 gi|313468218|gb|EFR63685.1| flagellar basal-body rod protein FlgC [Thermaerobacter
          subterraneus DSM 13965]
          Length = 188

 Score = 43.9 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENAD---NK-N--YVRRDTMTTI 45
           + + F+ A +       +   I  N+ N D         Y R   +   
Sbjct: 4  GMFSTFDIAASGMTAQRLRLDLIASNLANVDSTRTPQGGPYRRLVPVFEE 53


>gi|321313188|ref|YP_004205475.1| flagellar basal-body rod protein [Bacillus subtilis BSn5]
 gi|320019462|gb|ADV94448.1| flagellar basal-body rod protein [Bacillus subtilis BSn5]
          Length = 270

 Score = 43.9 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/255 (7%), Positives = 61/255 (23%), Gaps = 16/255 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A +      ++   +  NI NA+   Y                 + R+  + +
Sbjct: 1   MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK------------ADQGSMRAFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES----YSKNL 118
             ++     +   +  +      +            S          +L       +   
Sbjct: 49  LSRIESKSPAGTSRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMNAET 108

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +E       +  A  +  + +++    +  +   +    L        +           
Sbjct: 109 NEKAALFYPVQTAGGIRYSKSSTFSLNENNQLTINGRPILSTDRQPITVDNENFTVSENG 168

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T +   A     +    ++ +           + ND+     +    +          
Sbjct: 169 TVTTNGRTAGQIDIRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVSYSLKQGVSELS 228

Query: 239 KMNSYTVTSESNPIF 253
            ++  +  +E    +
Sbjct: 229 NVDVTSAYTEMTEAY 243


>gi|302343756|ref|YP_003808285.1| flagellar basal-body rod protein FlgF [Desulfarculus baarsii DSM
           2075]
 gi|301640369|gb|ADK85691.1| flagellar basal-body rod protein FlgF [Desulfarculus baarsii DSM
           2075]
          Length = 231

 Score = 43.9 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 8/172 (4%), Positives = 24/172 (13%), Gaps = 14/172 (8%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80
                 N+ N     +     +             R    +     L    + +      
Sbjct: 21  MDVTANNLANVSTTGFKGDRLIFDDMLS-------REMQVDFSQGSLQETGNPLDVALSG 73

Query: 81  QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNT 140
                  +                   +              +  +              
Sbjct: 74  -------DGFFMIRTPGGDRLTRSGAFKMDANGALVTSEGHAVLDSAGQPVTLNPSGGQV 126

Query: 141 SAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                  +  D  +   L +  ++   +       A               D
Sbjct: 127 FIDSEGNVSQDGAQVATLAVVEVQNKAALQKDGRTAFSGADGQLPPTAPAAD 178


>gi|291519599|emb|CBK74820.1| flagellar basal-body rod protein FlgC [Butyrivibrio fibrisolvens
          16/4]
          Length = 151

 Score = 43.9 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M L   F+           +   I  NI N           Y R+    T 
Sbjct: 1  MGLFQPFDIVATGLTAQRFRMDIIAENIANVSTTRTQNGGPYRRKIVTFTE 51


>gi|160903121|ref|YP_001568702.1| flagellar basal-body rod protein FlgC [Petrotoga mobilis SJ95]
 gi|160360765|gb|ABX32379.1| flagellar basal-body rod protein FlgC [Petrotoga mobilis SJ95]
          Length = 140

 Score = 43.9 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 16/70 (22%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI---------- 45
           L  V + A +       +   I +N+ N+D     +   Y R+  +             
Sbjct: 4  GLFKVLDIAASGMTAERFRLDVISQNLANSDTTRTEEGGPYRRKAVIFQEALSESTNGDR 63

Query: 46 SPENVTVVTQ 55
          +   V V + 
Sbjct: 64 NFGGVKVSSI 73



 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E Y +   VN+  E+  ++  +++Y ++  ++     M  + L   +
Sbjct: 94  EGYVSYPNVNVLREMVDMMSAQRAYEMNAAVVNSAKSMYNSALGIGR 140


>gi|328543157|ref|YP_004303266.1| flagella basal body rod protein [polymorphum gilvum SL003B-26A1]
 gi|326412903|gb|ADZ69966.1| Flagella basal body rod protein [Polymorphum gilvum SL003B-26A1]
          Length = 245

 Score = 43.9 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 7/132 (5%), Positives = 23/132 (17%), Gaps = 6/132 (4%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD--KVLHAHSSAIG 75
            +Q      N+ N +   +  +          V   ++           +     ++ + 
Sbjct: 16  RRQLDVAANNMANMNTSGFKAQRLTFEEYVMPVARASEFKGGDMKLSYVQDYQTITNFLS 75

Query: 76  QQRLLQS----FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
              +L           +   A    +         L               +        
Sbjct: 76  GSIILTGNPLDLAVDGDGWLAVQTEDGEAYTRNGALHLDNTGTLVTAEGRPVLTDGGPIQ 135

Query: 132 EEVVQNFNTSAR 143
                     + 
Sbjct: 136 FTREDGKIDISD 147


>gi|255099412|ref|ZP_05328389.1| flagellar basal-body rod protein [Clostridium difficile
          QCD-63q42]
          Length = 105

 Score = 43.9 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            ++  +   +  + +  +I  NI N + + Y R       +
Sbjct: 2  NTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYVTFEET 43


>gi|86356310|ref|YP_468202.1| flagellar basal body rod protein FlgC [Rhizobium etli CFN 42]
 gi|86280412|gb|ABC89475.1| flagellar basal-body rod protein [Rhizobium etli CFN 42]
          Length = 138

 Score = 43.9 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 10/63 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT---ISPENVTV 52
          L A    A +     S +   +  NI NA    D      Y R+             V  
Sbjct: 4  LSAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDRTSGVET 63

Query: 53 VTQ 55
          V  
Sbjct: 64 VNV 66


>gi|298345988|ref|YP_003718675.1| flagellar basal body rod protein [Mobiluncus curtisii ATCC 43063]
 gi|304390254|ref|ZP_07372208.1| flagellar basal-body rod protein FlgC [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|315654575|ref|ZP_07907481.1| flagellar basal-body rod protein FlgC [Mobiluncus curtisii ATCC
          51333]
 gi|315657519|ref|ZP_07910401.1| flagellar basal-body rod protein FlgC [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|298236049|gb|ADI67181.1| flagellar basal body rod protein [Mobiluncus curtisii ATCC 43063]
 gi|304326736|gb|EFL93980.1| flagellar basal-body rod protein FlgC [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|315491039|gb|EFU80658.1| flagellar basal-body rod protein FlgC [Mobiluncus curtisii ATCC
          51333]
 gi|315491991|gb|EFU81600.1| flagellar basal-body rod protein FlgC [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 132

 Score = 43.9 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+       A        +    I  NI N +  
Sbjct: 1  MTTFGAIGIAGTGMTVNRKWLDCISDNIANINTT 34


>gi|242309757|ref|ZP_04808912.1| flagellar basal body rod protein FlgC [Helicobacter pullorum MIT
          98-5489]
 gi|239523758|gb|EEQ63624.1| flagellar basal body rod protein FlgC [Helicobacter pullorum MIT
          98-5489]
          Length = 166

 Score = 43.9 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVTQRS 57
          L+ F+ +    +   Q+   I  NI NA+     +   Y RR+ +               
Sbjct: 3  LSSFDISGYGLSAQRQRVNLISSNIANANTTRTDEGGPYRRRELILKAF----------- 51

Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
              + ++     ++ +  +  L   ++  E 
Sbjct: 52 NFDKVLNQKYENSNNLLKYEDPLDEMDSFDEQ 83


>gi|85058009|ref|YP_453711.1| flagellar basal body rod protein FlgC [Sodalis glossinidius str.
          'morsitans']
 gi|84778529|dbj|BAE73306.1| flagellar basal-body rod protein FlgC [Sodalis glossinidius str.
          'morsitans']
          Length = 134

 Score = 43.9 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT-ISPENVTVV 53
          MSL ++F+ + +     SQ+      N+ NA          Y  +  +    +     V 
Sbjct: 1  MSLFSIFDISGSALMAQSQRLNVSASNMANADSVTGPDGEPYRAKQVVFQLDAALGQPVG 60

Query: 54 TQRSE 58
            R  
Sbjct: 61 GVRVS 65


>gi|86153287|ref|ZP_01071491.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843013|gb|EAQ60224.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 270

 Score = 43.9 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 36/161 (22%), Gaps = 30/161 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                     +   E Y  N     +  +   N  +     
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIC 156


>gi|58426791|gb|AAW75828.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 280

 Score = 43.9 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 30  MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 89

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 90  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 149

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 150 VLDEGGNPMTIPPHQAMEIGS 170


>gi|229017058|ref|ZP_04173977.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1273]
 gi|229023239|ref|ZP_04179749.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1272]
 gi|228738033|gb|EEL88519.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1272]
 gi|228744231|gb|EEL94314.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1273]
          Length = 267

 Score = 43.9 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 38/170 (22%), Gaps = 18/170 (10%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D  TT    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSTTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGTAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
            + + Y +  S   +     +            +   +  R   D  ++ 
Sbjct: 120 INSDRYLQTSSGAYVMDVNNERIRIPENVDFFVSNNGEIYREVNDGTLQK 169



 Score = 40.8 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 10/265 (3%)

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
            I        +   +  +      +   F+  N  +   +    +  G   ++N GS   
Sbjct: 5   YIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSTTNIGSVDY 64

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                A             N   +       +                            
Sbjct: 65  AVVPAATHVNLVQGNIQMTNSATDFFLDDGTA-----GTTSFFVTSKNDETFLTRDGSFT 119

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                  +T         N   +R   +V      N +      D      D        
Sbjct: 120 INSDRYLQTSSGAYVMDVNNERIRIPENVDFFVSNNGEIYREVNDGTLQKPDIKRIVIAQ 179

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
                ++         R +  +     + +             +         V++ +E+
Sbjct: 180 LQTKTVDAEANARLMQRENKSFTLAEGNIADLP-----NGTGAVKNHMLENSNVDMTKEM 234

Query: 449 SFLIKVEQSYNISNKLIMFTDKMLQ 473
           + L+  ++    S +++   DK+ +
Sbjct: 235 ADLMTSQKMIQASQRVMTSFDKIYE 259


>gi|313610115|gb|EFR85438.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208]
          Length = 37

 Score = 43.9 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 5/37 (13%), Positives = 18/37 (48%)

Query: 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +  E   L+  +  +  + K+I   D +++ ++  ++
Sbjct: 1   MSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNLIQ 37


>gi|169826608|ref|YP_001696766.1| flagellar hook-basal body complex protein [Lysinibacillus
           sphaericus C3-41]
 gi|168991096|gb|ACA38636.1| Flagellar hook-basal body complex protein [Lysinibacillus
           sphaericus C3-41]
          Length = 280

 Score = 43.9 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 61/267 (22%), Gaps = 18/267 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL   F           ++   +  N+ NA+   +       +                +
Sbjct: 3   SLFKGFYTVATGMITQQRRTELLSNNLANANTPGFK---ADQSTI----------RSFPD 49

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           M    +   ++   QQ   +    +        +        +          +   ++ 
Sbjct: 50  MLMSSIGKTNAPANQQAGAEYMSQV-----GALNTGTYLQETLPNYIQGQIYSTDFTTDM 104

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L    +   E+ V                  +     +      ++   +       + 
Sbjct: 105 ALIDGNLPQNEDGVTGSIFFRLAHPDGGEAYTRNGNFTLDGQGYLVNGQGLYVLNDAGQR 164

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
               +    LD+   +     ++  +      N +M+    +G    E      +    N
Sbjct: 165 IQLPNDDFRLDESGAIYVNNQQVARVGVSYAANPNMLQKQDNGLIRTENGANLPSAYGTN 224

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVP 268
             + T   N +    V         + 
Sbjct: 225 GVSFTLRQNFLEGSNVDSGRAMTDLMT 251



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/204 (6%), Positives = 48/204 (23%), Gaps = 8/204 (3%)

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                   +P +                    +  N + V G            +     
Sbjct: 79  TGTYLQETLPNYIQGQIYSTDFTTDMALIDGNLPQNEDGVTGSIFFRLAHPDGGEAYTRN 138

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                    Y  N   L       ++      +         +  +           A  
Sbjct: 139 GNFTLDGQGYLVNGQGLYVLNDAGQRIQLPNDDFRLDESGAIYVNNQQVARVGVSYAANP 198

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-HISESYSNTVGVNLQEELSFLIK 453
           N         +     L +  + ++          +  + +++     V+    ++ L+ 
Sbjct: 199 N-------MLQKQDNGLIRTENGANLPSAYGTNGVSFTLRQNFLEGSNVDSGRAMTDLMT 251

Query: 454 VEQSYNISNKLIMFTDKMLQTLLE 477
             +++  + K++   D+ ++  + 
Sbjct: 252 AYRAFEANQKVLQAYDRSMEKAVN 275


>gi|21231396|ref|NP_637313.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768551|ref|YP_243313.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113062|gb|AAM41237.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573883|gb|AAY49293.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 251

 Score = 43.9 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/144 (6%), Positives = 27/144 (18%), Gaps = 6/144 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---TTISPENVTVVTQRSEN 59
           +      A      + Q  +++  N+ N D   +           I  +           
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFQIRGKGYPSRIDALHV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
              FD    +          L         ++      +       +L  +        +
Sbjct: 61  DQGFD---RSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTAN 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAR 143
              +     +              
Sbjct: 118 GHAVLDEGGNPMTIPPHQAMEIGS 141


>gi|229155343|ref|ZP_04283453.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 4342]
 gi|228628058|gb|EEK84775.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 4342]
          Length = 257

 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    +           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGASGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 INSDRYLQTSSGAYVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NNRLVQRENKSFTLAEGNITDLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|186681689|ref|YP_001864885.1| filamentous haemagglutinin outer membrane protein [Nostoc punctiforme
            PCC 73102]
 gi|186464141|gb|ACC79942.1| filamentous haemagglutinin family outer membrane protein [Nostoc
            punctiforme PCC 73102]
          Length = 1693

 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 40/437 (9%), Positives = 80/437 (18%), Gaps = 21/437 (4%)

Query: 9    KAQNICNNASQQF-ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
             A +  N   Q      + +I  A           T         +T ++ + N  D   
Sbjct: 722  IAASGVNINLQAIGNITINDITGA-TPGVTTAGVATLNLGGGSFSLTSQNGSVNFVDPTN 780

Query: 68   HAHSSAIGQQRLLQSFE--ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
               ++         S     L    +     + + +     +       S         +
Sbjct: 781  TIQTTGGAINISGASLLLGNLNTTRNFARSGDITLSATTGNISTGNIIASGQGYSAGNVQ 840

Query: 126  TVIDNAEEVVQNFNTSAREVQKIRAD-----------ADKEIELEISNLRRFLSELTVVN 174
             V  N    +   NTS      +                  I    S+         +V 
Sbjct: 841  VVSSNGGITLNQINTSDTGNNGVNTAGTVTLTAAGNILTDRINSFSSDAGSLGRGGDIVA 900

Query: 175  DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                    +                  +  + ++       +  +  S      +     
Sbjct: 901  TTTAGSITTGAINSSVFKTGGGDFTGTAGAVTLTATENITVNDAINASAIAIGVDGTGNV 960

Query: 235  INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
                     T T+ SN  F +    S               +Q+  + +         +A
Sbjct: 961  TGGNVTLQTTNTAGSNISFTNINTQSVADDFVDGNTVQGGNVQVLTNGLVQGIGVGTTIA 1020

Query: 295  RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
               I                          D        I                    
Sbjct: 1021 TGGIFD------SGAGVTTSIAGGTVTIRHDGGPGNVPFIVGDATSANGTAGTIDVGGGT 1074

Query: 355  GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
               S  F                   S N   +    + +    T               
Sbjct: 1075 TIASGNFPVLPTGGDAIGTPTGITITSVNTPPVLTANSSLPNTQTNQPVTLTFSSLAALV 1134

Query: 415  RSDSHDLHMKSQVVFNH 431
               ++D+      V N 
Sbjct: 1135 SDANNDITSIQVDVVNT 1151


>gi|332525068|ref|ZP_08401248.1| flagellar basal-body rod protein FlgC [Rubrivivax benzoatilyticus
          JA2]
 gi|332108357|gb|EGJ09581.1| flagellar basal-body rod protein FlgC [Rubrivivax benzoatilyticus
          JA2]
          Length = 139

 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 16/72 (22%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTI--------- 45
          MS+  +F+ + +  +  SQ+   +  N+ NAD         Y  R  +            
Sbjct: 1  MSMFRIFDVSGSAVSAQSQRLNVVASNLANADTVAGPDGQAYKARQVVFQTALMDAGADP 60

Query: 46 -SPENVTVVTQR 56
           S   V V T R
Sbjct: 61 ASAAGVRVSTIR 72



 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 5/135 (3%)

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
           S  R             + L      + +       +        +     L++   +  
Sbjct: 2   SMFRIFDVSGSAVSAQSQRLNVVASNLANADTVAGPDGQAYKARQVVFQTALMDAGADPA 61

Query: 409 GWLEKNRSDSHDLHMKSQVVFN-----HISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                  S   +     + V +       +E Y     VN  +E+  +I   +SY  + +
Sbjct: 62  SAAGVRVSTIREDASPGRRVHDPKHPAADAEGYVTFSNVNAVQEMVDMISASRSYQNNVE 121

Query: 464 LIMFTDKMLQTLLEG 478
           ++     +LQ  L+ 
Sbjct: 122 VMNTAKTLLQKTLQM 136


>gi|260893877|ref|YP_003239974.1| flagellar basal-body rod protein FlgC [Ammonifex degensii KC4]
 gi|260866018|gb|ACX53124.1| flagellar basal-body rod protein FlgC [Ammonifex degensii KC4]
          Length = 137

 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 15/77 (19%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI--------- 45
          M+ +  F  + +       +   +  N+ N D         Y RR  +            
Sbjct: 1  MAFIDPFRISGSGLTAERLRLDLVANNLANIDTTRTPAGGPYRRRVPVFAQVLEARKEGM 60

Query: 46 SPENVTVVTQRSENKNM 62
              V VV    +    
Sbjct: 61 VGMGVRVVAIVEDQSPF 77



 Score = 43.5 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            VN+ +E+  LI   ++Y  +  ++    +M
Sbjct: 97  NVNVADEVVDLIGAARAYEANATVLETAKEM 127


>gi|163794133|ref|ZP_02188106.1| flagellar basal body rod protein [alpha proteobacterium BAL199]
 gi|159180747|gb|EDP65266.1| flagellar basal body rod protein [alpha proteobacterium BAL199]
          Length = 136

 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT 44
          M L      + +       +   +  N+ NA    +      Y R+     
Sbjct: 1  MDLTNAIKISASGMRAQGTRLRVVAENVANAESLGNTAADDPYRRKTITFE 51


>gi|160896081|ref|YP_001561663.1| flagellar basal-body rod protein FlgC [Delftia acidovorans SPH-1]
 gi|160361665|gb|ABX33278.1| flagellar basal-body rod protein FlgC [Delftia acidovorans SPH-1]
          Length = 134

 Score = 43.9 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          MS+ ++F+ + +  +  SQ+   +  N+ N D         Y  R  +           +
Sbjct: 1  MSMFSIFSISGSAVSAQSQRLNVVASNLANVDAVAGPDGKAYQARQVVFQTVAMGEEGSS 60

Query: 55 QRSENKNMFDK 65
              +    D 
Sbjct: 61 GVRVSAISQDN 71


>gi|269796400|ref|YP_003315855.1| flagellar basal-body rod protein FlgC [Sanguibacter keddieii DSM
          10542]
 gi|269098585|gb|ACZ23021.1| flagellar basal-body rod protein FlgC [Sanguibacter keddieii DSM
          10542]
          Length = 134

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 11/67 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTI-----SPEN 49
          M+       A        +   ++  N+ N +         +  R  + +      + + 
Sbjct: 1  MTTFGAIGIASTGMTVNRKWLDAVSDNLANINTVRPSDEAAFQARYVVASAVGYPENGQG 60

Query: 50 VTVVTQR 56
          V V    
Sbjct: 61 VQVAGIE 67



 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 5/39 (12%), Positives = 18/39 (46%)

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           V++  ++S +I  ++ Y  +  ++       +  L+  +
Sbjct: 95  VDMAGQMSQMIMAQRGYQANASVVDRAKATYEAALQIGR 133


>gi|15887900|ref|NP_353581.1| flagellar basal body rod protein FlgC [Agrobacterium tumefaciens
          str. C58]
 gi|20141427|sp|Q44336|FLGC_AGRT5 RecName: Full=Flagellar basal-body rod protein flgC
 gi|15155492|gb|AAK86366.1| flagellar basal-body rod protein [Agrobacterium tumefaciens str.
          C58]
          Length = 139

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          L A    A +     S +   +  NI NA    D      Y R+      
Sbjct: 4  LSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGS 53


>gi|325918878|ref|ZP_08180955.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534915|gb|EGD06834.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 251

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VLDEGGNPMTIPPHQAMEIGS 141


>gi|315127355|ref|YP_004069358.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas sp. SM9913]
 gi|315015869|gb|ADT69207.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas sp. SM9913]
          Length = 143

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTISPENVTVVT 54
           MSL  VF+ A +  +  + +  +   NI NA+       + Y  R  +        +   
Sbjct: 1   MSLYNVFDIAGSGMSAQNVRLNTTASNISNANTISSSQNETYRARQPVFAAELTKASASA 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
              +   +  KVL    S    Q          +        N +    ++ +  +  SY
Sbjct: 61  SNPQGSAVGVKVLGVVESNKPLQIEYNPNHPSADENGYIYKPNVNVVEEMANMISASRSY 120

Query: 115 SKN 117
             N
Sbjct: 121 QTN 123


>gi|255262463|ref|ZP_05341805.1| flagellar basal-body rod protein FlgF [Thalassiobium sp. R2A62]
 gi|255104798|gb|EET47472.1| flagellar basal-body rod protein FlgF [Thalassiobium sp. R2A62]
          Length = 238

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 9/117 (7%), Positives = 21/117 (17%), Gaps = 3/117 (2%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   I  NI NA    Y +     +     V              +     
Sbjct: 12  QSGLM---KEMRVIANNIANAATSGYRQEGITFSEYVAAVDQDHSSISMATANVRETSIL 68

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              + +           E        +            +            +  + 
Sbjct: 69  QGGLTKTGGTFDLAIEGEGYFLVQTPDGDRLTRAGAFTPNSNGDLVTADGYPVLDSG 125


>gi|167567751|ref|ZP_02360667.1| flagellar basal-body rod protein FlgF [Burkholderia oklahomensis
           EO147]
 gi|167574702|ref|ZP_02367576.1| flagellar basal-body rod protein FlgF [Burkholderia oklahomensis
           C6786]
          Length = 242

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 41/193 (21%), Gaps = 2/193 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + A+     +    A         NI NA    + R +     +               +
Sbjct: 1   MDALIYTVMSGAGRALHALEVHANNIANAQTDGF-RAELEAARTRPVAGYGYDSRHLIEL 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLSED 121
              VL A +  + +                       +        +   +         
Sbjct: 60  QANVLSADAGVVEETDRELDAAIQGRGYFTVQGPNGGNAYTRAGNFQIDADGALTVNGRP 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           ++G+       +           +    A   +   ++   L    +   V N+      
Sbjct: 120 VIGEGGPVVLPDFTSVRIGEDGTLSITVAGDTEVQAVDRLELVDADASELVKNETGLLVP 179

Query: 182 ASKHDAHDFLDQR 194
            +        D R
Sbjct: 180 RNGAPLPASDDVR 192


>gi|119469948|ref|ZP_01612753.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Alteromonadales bacterium TW-7]
 gi|119446658|gb|EAW27931.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Alteromonadales bacterium TW-7]
          Length = 143

 Score = 43.9 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MSL  VF+ A +  +  + +  +   NI NA+ 
Sbjct: 1  MSLYNVFDIAGSGMSAQNVRLNTTASNISNANT 33


>gi|325274802|ref|ZP_08140830.1| flagellar basal body rod protein FlgC [Pseudomonas sp. TJI-51]
 gi|324100070|gb|EGB97888.1| flagellar basal body rod protein FlgC [Pseudomonas sp. TJI-51]
          Length = 87

 Score = 43.9 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     M+Q +L
Sbjct: 48  NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVL 83


>gi|303248348|ref|ZP_07334609.1| flagellar basal-body rod protein FlgC [Desulfovibrio
          fructosovorans JJ]
 gi|302490256|gb|EFL50170.1| flagellar basal-body rod protein FlgC [Desulfovibrio
          fructosovorans JJ]
          Length = 146

 Score = 43.9 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 7/54 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTISP 47
          M L    +   +  +       +I  N+ N            YVR+  M   +P
Sbjct: 1  MDLFTAMDIGSSGMSAQRTLMNTISMNLANIRTTRTVNGGGPYVRKSVMLESTP 54



 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           N+ EE++ +I   +SY  S+  I     M    LE  +
Sbjct: 109 NVVEEMANMITAMRSYEASSSSIGTVKTMFSKALEIGR 146


>gi|227876737|ref|ZP_03994846.1| flagellar basal body rod protein [Mobiluncus mulieris ATCC 35243]
 gi|269976264|ref|ZP_06183260.1| flagellar basal-body rod protein FlgC [Mobiluncus mulieris 28-1]
 gi|306817684|ref|ZP_07451426.1| flagellar basal-body rod protein FlgC [Mobiluncus mulieris ATCC
          35239]
 gi|307699910|ref|ZP_07636961.1| flagellar basal-body rod protein FlgC [Mobiluncus mulieris
          FB024-16]
 gi|227842634|gb|EEJ52834.1| flagellar basal body rod protein [Mobiluncus mulieris ATCC 35243]
 gi|269935593|gb|EEZ92131.1| flagellar basal-body rod protein FlgC [Mobiluncus mulieris 28-1]
 gi|304649498|gb|EFM46781.1| flagellar basal-body rod protein FlgC [Mobiluncus mulieris ATCC
          35239]
 gi|307614948|gb|EFN94166.1| flagellar basal-body rod protein FlgC [Mobiluncus mulieris
          FB024-16]
          Length = 132

 Score = 43.9 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+       A        +    I  NI N +  
Sbjct: 1  MTTFGAIGIAGTGMTVNRKWLDCISDNIANINTT 34


>gi|51894142|ref|YP_076833.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM
          14863]
 gi|51857831|dbj|BAD41989.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM
          14863]
          Length = 119

 Score = 43.9 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 11/33 (33%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            + AS +   +  N+ NA    + R       
Sbjct: 14 AIDAASLRQRVLANNLANAMTPGFKRSRVDFET 46


>gi|331005437|ref|ZP_08328816.1| flagellar basal body protein [gamma proteobacterium IMCC1989]
 gi|330420713|gb|EGG95000.1| flagellar basal body protein [gamma proteobacterium IMCC1989]
          Length = 130

 Score = 43.9 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 10/35 (28%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
            I  NI N     Y  +         N+++    
Sbjct: 25 QVISHNIANVSTPGYSAKTVSFEQFLTNMSMDATS 59


>gi|294084417|ref|YP_003551175.1| flagellar proximal rod protein FlgF [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663990|gb|ADE39091.1| flagellar proximal rod protein FlgF [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 251

 Score = 43.9 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               VN+ EEL   I+ ++ Y I+ KLI    ++ +     ++
Sbjct: 206 ELSNVNITEELVNSIEDQRQYEINIKLISTAQELDEGTSSLMR 248


>gi|86750895|ref|YP_487391.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris
           HaA2]
 gi|86573923|gb|ABD08480.1| Flagellar basal body rod protein [Rhodopseudomonas palustris HaA2]
          Length = 253

 Score = 43.9 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 8/152 (5%), Positives = 31/152 (20%), Gaps = 9/152 (5%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
           +Q   +  N+ N +   +  + ++              +       D+ +          
Sbjct: 17  RQMDVVANNLANMNTNGFKAQRSVFQEYLNTGAHEDNFQRP-----DRRVSFVQDRAAYL 71

Query: 78  RLLQSFEALKEMMSADDHYNNSP---THYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                     +         ++         +        S N    ++  +        
Sbjct: 72  DFSTGPMTQTKDPLDVAIDGSAFLVVQTPAGERFTRDGKLSINPRGQLVNSSGYPVLGNS 131

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRF 166
                    +   I  D +  +    + +   
Sbjct: 132 GPIVFQPTDKAINIAQDGNVSVVEGTATIDSL 163


>gi|225619784|ref|YP_002721041.1| flagellar basal body rod protein FlgB [Brachyspira hyodysenteriae
          WA1]
 gi|225214603|gb|ACN83337.1| flagellar basal body rod protein FlgB [Brachyspira hyodysenteriae
          WA1]
          Length = 142

 Score = 43.9 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 1  MSLLA------VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          MS+ A          A+ + N    +   I  NI N    N+ R D    
Sbjct: 1  MSMFADTTYAKTMTVAKKLLNVYGLRAEVIADNIANVSTPNFKRSDVTFE 50


>gi|170744541|ref|YP_001773196.1| flagellar basal body rod protein [Methylobacterium sp. 4-46]
 gi|168198815|gb|ACA20762.1| flagellar basal body rod protein [Methylobacterium sp. 4-46]
          Length = 242

 Score = 43.9 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 10/168 (5%), Positives = 38/168 (22%), Gaps = 11/168 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENK 60
           +      + +      ++  ++  NI N     Y   +T      +          S   
Sbjct: 1   MQNGLYVSLSAQVALQKRLDTVANNIANLATVGYRAEETKFEAVFDKARTGPVAFASTGD 60

Query: 61  NMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               ++        + +       ++ +++                  ++        ++
Sbjct: 61  TYISRLAGPTIKTDAPLDVAVQGDAWLSVQ------GPGGAPVYTRDGRMTMDASGQLRS 114

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
           +S   +                 +      I+ +      L +  L  
Sbjct: 115 VSGQPILDPGGAPILLDPNAGPPTIGRDGSIQQNGSLVGSLGVFTLDA 162


>gi|1857438|gb|AAC45656.1| FlgC [Proteus mirabilis]
          Length = 134

 Score = 43.9 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT-ISPENVTVV 53
          MSL ++F+ + +  +  SQ+      N+ N           Y  +  +    +P    + 
Sbjct: 1  MSLFSIFDISGSALSAQSQRLNVSASNMANVDSVVGPDGEPYRAKQVVFQVNAPAGQEIG 60

Query: 54 TQ 55
            
Sbjct: 61 GV 62



 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V++  E+   I   +SY  + +++     ++Q  L
Sbjct: 95  NVDVVGEMINTISASRSYQANVEVMNTAKSLMQKTL 130


>gi|323697471|ref|ZP_08109383.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132]
 gi|323457403|gb|EGB13268.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans
           ND132]
          Length = 258

 Score = 43.9 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 46/225 (20%), Gaps = 18/225 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56
           +      A     +   + +SI  N+ N +   + +       +         V   T  
Sbjct: 1   MRDSTQSAIFGALSNELRMSSIANNLANVNTSAFKKDKLAFHDTFIRFAHDYLVDAKTYI 60

Query: 57  SENKNM------FDKVLHAHSSAIGQQRLLQSFEALK-----EMMSADDHYNNSPTHYIS 105
                           L A  + + Q  + ++   L          +             
Sbjct: 61  RGEDMFPEGHIMAKARLSAQQADLSQGSMERTGNQLDFALSGPGFFSVQGDTAMLYTRAG 120

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
                 +   K +    +                    E               +     
Sbjct: 121 NFVTDGDGMLKTVDGYPVM-VGGGPLIIPQGGRIQVDDEGNIQVNGEPAGSFDVVDFDSP 179

Query: 166 FLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            L E    N+ I     ++    D    +  + +   E++     
Sbjct: 180 ELLERVGSNNYIMPTGGAQIPPQDVSVAQGFIEKSNVEVVTEMVS 224



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 23/49 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +++ +     V +  E+  +I+ ++++ +  K+I     +   L+  V
Sbjct: 205 SVAQGFIEKSNVEVVTEMVSMIETQRAFTMYTKMIQGDSDLDSKLINQV 253


>gi|91792662|ref|YP_562313.1| flagellar basal body rod protein FlgC [Shewanella denitrificans
          OS217]
 gi|91714664|gb|ABE54590.1| flagellar basal-body rod protein FlgC [Shewanella denitrificans
          OS217]
          Length = 138

 Score = 43.9 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +F+ + +     S +  +   NI NAD
Sbjct: 1  MSLFNIFDVSGSGMAAQSIRLNTTASNIANAD 32



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY ++ ++   T  MLQ  L  
Sbjct: 99  NVNVMEEMADMISASRSYQMNVQVADATKTMLQQTLRM 136


>gi|148558590|ref|YP_001257211.1| flagellar basal body rod protein FlgC [Brucella ovis ATCC 25840]
 gi|148369875|gb|ABQ62747.1| flagellar basal-body rod protein FlgC [Brucella ovis ATCC 25840]
          Length = 140

 Score = 43.9 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI N       AD   Y R+         + 
Sbjct: 1  MSSDALQSTLKIAASGLSVQSTRLRIVSENIANAQSTARTADTDPYRRKTVSFRAELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|148926573|ref|ZP_01810255.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845267|gb|EDK22361.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 750

 Score = 43.9 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 117/388 (30%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++       + ++   ++ +        D +   + D         +      +K     
Sbjct: 365 NNGDITKLNNPVTVTINNQQFTIDLKQTDFIKSKMTDTDGNAANGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            + +    T     +        +     S  +T       I          + +     
Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           +        +  + ++    +   +            +S     + ++D           
Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T+   P +  + +        +   + ++ ++       N   DS ++N     + 
Sbjct: 605 TTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +    ++ ++  +  ++    SN + V+  E +  L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|94263245|ref|ZP_01287062.1| Flagellar basal-body rod protein FlgC [delta proteobacterium
          MLMS-1]
 gi|93456463|gb|EAT06583.1| Flagellar basal-body rod protein FlgC [delta proteobacterium
          MLMS-1]
          Length = 144

 Score = 43.9 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M +L   N + +       +      N+ NA+     +   Y  +  +    P
Sbjct: 1  MDILTAMNISGSALKAERSRLNIASMNMANANTTRTVEGGPYRAKSVVFEARP 53


>gi|47565441|ref|ZP_00236482.1| flagellar basal-body rod protein flgF, putative [Bacillus cereus
           G9241]
 gi|47557431|gb|EAL15758.1| flagellar basal-body rod protein flgF, putative [Bacillus cereus
           G9241]
          Length = 257

 Score = 43.9 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 INSDRYLQTSSGAYVMDVNNERVRIPEGAKIAVQADGTLYDEGTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              ++    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NARLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|269792949|ref|YP_003317853.1| flagellar basal-body rod protein FlgB [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100584|gb|ACZ19571.1| flagellar basal-body rod protein FlgB [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 134

 Score = 43.9 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
           S++  ++ +N+ NA+   Y RR+         V    Q            H  +  +G  
Sbjct: 18  SRRMGAVAQNVANANTPRYARREVSFEDQLAAVI--DQPRRLPLAVSDQRHMTNVPLGLD 75

Query: 78  RLLQSFEALKEMMSADDHYNNSPTHYISKL 107
            +    + +++ +   D  N  P   ++KL
Sbjct: 76  NVKPREDRVEDEIYRYDGNNVDPEVEMAKL 105


>gi|258511368|ref|YP_003184802.1| flagellar basal-body rod protein FlgB [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478094|gb|ACV58413.1| flagellar basal-body rod protein FlgB [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 134

 Score = 43.9 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          M++  +    Q+  + ++ + A    NI NA    Y R+D       ++     
Sbjct: 1  MTVFELL---QSALDASTLRQAVYANNIANAGTPGYKRQDVAFETLLQSALGSG 51


>gi|224079594|ref|XP_002192146.1| PREDICTED: similar to KIAA0833 protein [Taeniopygia guttata]
          Length = 1641

 Score = 43.9 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 28/359 (7%), Positives = 90/359 (25%), Gaps = 19/359 (5%)

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI-----ELEISNLRRFLS 168
                S ++     ++  +    +  + +  +      AD         + ++++   LS
Sbjct: 304 LLHQNSTEVSSTNQVEVPDTTQNSPVSISSGLNSDPDMADSPAVTGVSSMAVASVMGSLS 363

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
           +   V  +     A    +      + +L    +    +  +  + +     T+  +   
Sbjct: 364 QSATVFMSEVTSEAVYTMSPTSGPNQHLLSSDAAAQGLVLAVSSDGHKFAFPTTGSSESL 423

Query: 229 ETVPRDIN--FEKMNSYTVTSESNPIFIDGVV----VSSNQGSAVPKGKIKALLQIRDSV 282
             +P  ++       +     +     ++        +  QG     G +K+     +  
Sbjct: 424 SMLPSTVSEELVLSTTLEGNRKIPETTMNFDPDCFLNNPKQGQTYGGGGMKSDSINTNIR 483

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
                 +       L      +D       +            L      G+  +     
Sbjct: 484 QSPTTERSFNFNTTLTKEIKTEDTSFEQQMSKEAFSSTSASNTLTLSTGSGLLPSGGGLS 543

Query: 343 QYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLL 401
              +           +K +  +       P +      SF       P+         L 
Sbjct: 544 PSTTLEQMDFSAIDSNKDYSSSFNQTVQSPHVHQTPSPSFFLQDASKPLPLEQNTHNNLN 603

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           +   + +  L  +   +      +      +     +T   +L      L++ + ++  
Sbjct: 604 DTGSSFVNTLGISNVKTESSSQTTSNCNGTVETRIESTS--SL-----QLMQFQANFQA 655


>gi|56964036|ref|YP_175767.1| flagellar basal body rod protein FlgC [Bacillus clausii KSM-K16]
 gi|56910279|dbj|BAD64806.1| flagellar basal-body rod protein FlgC [Bacillus clausii KSM-K16]
          Length = 148

 Score = 43.9 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISPEN 49
          M++ +  N + +       +      NI NAD             Y RR  +   +   
Sbjct: 1  MTMFSSMNVSGSGLTLQRLRMDVAASNIANADTTRAERVNGEWQPYQRRMVVQGPTSMG 59


>gi|225377360|ref|ZP_03754581.1| hypothetical protein ROSEINA2194_03008 [Roseburia inulinivorans
          DSM 16841]
 gi|225210785|gb|EEG93139.1| hypothetical protein ROSEINA2194_03008 [Roseburia inulinivorans
          DSM 16841]
          Length = 51

 Score = 43.9 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR 39
          ++     A     N  ++   +  N+ NAD   Y ++
Sbjct: 1  MIKGLYTAYTGMVNEQKRLDVLTNNLANADTNGYKKK 37


>gi|121607560|ref|YP_995367.1| flagellar basal-body rod protein FlgF [Verminephrobacter eiseniae
           EF01-2]
 gi|121552200|gb|ABM56349.1| flagellar basal-body rod protein FlgF [Verminephrobacter eiseniae
           EF01-2]
          Length = 246

 Score = 43.9 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 26/141 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +          A+ + A +  N+ N     +  + +     P        R      
Sbjct: 1   MDHIIYTTMTGAGAAAYRQAVLANNLANISTGGFRAQLSTFRSVPLQGDGAKTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +        R L +  A +   +                  S            
Sbjct: 61  TSGYDDSAGPVQHTGRNLDALAAGRAWFAVQGPDGTEAYTRAGSFELSPTGQLLTPGGLP 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +       T   
Sbjct: 121 VLSDAGTPIDMPPGADITLGA 141


>gi|313683371|ref|YP_004061109.1| flagellar basal-body rod protein flgc [Sulfuricurvum kujiense DSM
          16994]
 gi|313156231|gb|ADR34909.1| flagellar basal-body rod protein FlgC [Sulfuricurvum kujiense DSM
          16994]
          Length = 164

 Score = 43.9 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M+ L  F+ +    +    +  +I  NI NA      +   Y R++ +   
Sbjct: 1  MAFLNSFDISGYGLSAQRVRVNTISANIANAQTTRTNEGGPYRRQEVIFKA 51


>gi|254853114|ref|ZP_05242462.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           R2-503]
 gi|300764493|ref|ZP_07074486.1| flagellar basal-body rod protein [Listeria monocytogenes FSL
           N1-017]
 gi|258606464|gb|EEW19072.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           R2-503]
 gi|300514847|gb|EFK41901.1| flagellar basal-body rod protein [Listeria monocytogenes FSL
           N1-017]
          Length = 259

 Score = 43.9 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/218 (7%), Positives = 42/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           R             V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGSVARQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +   +    +        A+  + +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGNLYNAETGQYLGRLGTKFVSANQAD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
           ++V D       +  +  +    + ++   + E   + 
Sbjct: 183 SLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 220


>gi|224372658|ref|YP_002607030.1| flagellar basal-body rod protein [Nautilia profundicola AmH]
 gi|223589304|gb|ACM93040.1| flagellar basal-body rod protein [Nautilia profundicola AmH]
          Length = 261

 Score = 43.9 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 58/257 (22%), Gaps = 31/257 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++  +  A         +   I  N+ N +   + + D +                    
Sbjct: 1   MINGYYDATGAMVTQFNRLNVISNNLANVNTAGFKQDDIIIGDFERLFSEKRDNLPLENN 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     V     E  N     L   S+ +            K    A +  N
Sbjct: 61  TKEAAKFINRNLNKVPIVVEEYTNYDIGDLQKTSNPLDIA------LKEKNQFFAINTPN 114

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                           Y        +     +  +       T  +     + +      
Sbjct: 115 GEKLTRAGNFNLDANGYLVTKDGYQVLDEQNNPIQLAPSYPVTIDKNGNIYQNNEKVATF 174

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +        +    N        +  D  +   Q  +    ++ I  ++ ++  N  +
Sbjct: 175 KIVKIDNLNTLKKVGDNMFDFIPDTATIDTKNSTLQGFLEKSNVNPIREMTDLIETNRLV 234

Query: 218 VVYTSDGTTLFETVPRD 234
             Y    TT  + + RD
Sbjct: 235 EQYQKVMTTFMDDLNRD 251


>gi|323703190|ref|ZP_08114843.1| flagellar basal-body rod protein FlgF [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531849|gb|EGB21735.1| flagellar basal-body rod protein FlgF [Desulfotomaculum nigrificans
           DSM 574]
          Length = 257

 Score = 43.9 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           +             +S+ +     V+  +E+  +I   + Y  S +L+  +D++L   + 
Sbjct: 192 ADPQGTGQPAATTRVSQGWLEKANVDPVQEMINIIPATRIYESSQRLVQISDELLDKSIN 251

Query: 478 GV 479
            V
Sbjct: 252 QV 253


>gi|294625275|ref|ZP_06703914.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600449|gb|EFF44547.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 251

 Score = 43.9 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VQDEGGNPMTIPPHQAMEIGS 141


>gi|167770222|ref|ZP_02442275.1| hypothetical protein ANACOL_01565 [Anaerotruncus colihominis DSM
          17241]
 gi|167667544|gb|EDS11674.1| hypothetical protein ANACOL_01565 [Anaerotruncus colihominis DSM
          17241]
          Length = 145

 Score = 43.9 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS +   +   +       +  +I++NI N++     +   Y R+  +   
Sbjct: 1  MSFMKSMDIVGSALTAERFRMDTILQNIANSNTTRTPEGEPYRRKQVVFQE 51


>gi|324325790|gb|ADY21050.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 257

 Score = 43.5 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 50/230 (21%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L                + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGANGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 INSDRYLQTSSGAYVMDVNNERVRIPEGAKIAVQADGTLYDEGTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              ++    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|283853239|ref|ZP_06370490.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp. FW1012B]
 gi|283571344|gb|EFC19353.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp. FW1012B]
          Length = 146

 Score = 43.5 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 7/54 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTISP 47
          M L    +   +  +       +I  N+ N            YVR+  M   +P
Sbjct: 1  MDLFTALDIGSSGMSAQRTLMNTISMNLANIKTTRTVNGAGPYVRKSVMLESTP 54


>gi|254485859|ref|ZP_05099064.1| flagellar basal-body rod protein FlgF [Roseobacter sp. GAI101]
 gi|214042728|gb|EEB83366.1| flagellar basal-body rod protein FlgF [Roseobacter sp. GAI101]
          Length = 237

 Score = 43.5 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 32/120 (26%), Gaps = 6/120 (5%)

Query: 18  SQQFASIVRNIENADNKNYVRRDTMTTISPENV------TVVTQRSENKNMFDKVLHAHS 71
           +++   +  NI NA    Y     + +   + V      ++ T   +N N     L   +
Sbjct: 16  AREMQMVANNIANAATTGYRSEGVIFSEFVQTVDRGPSLSMGTANVQNTNYMQGALTQTN 75

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
                      +  ++           S T   +    + + +    +         D  
Sbjct: 76  GTFDFGIEGDGYFLIETPAGERLTRAGSFTPNSAGELVTYDGFRVLDAGGGPIFVPQDAG 135


>gi|188991640|ref|YP_001903650.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733400|emb|CAP51601.1| Flagellar basal-body rod protein flgF [Xanthomonas campestris pv.
           campestris]
          Length = 251

 Score = 43.5 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/144 (6%), Positives = 27/144 (18%), Gaps = 6/144 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM---TTISPENVTVVTQRSEN 59
           +      A      + Q  +++  N+ N D   +           I  +           
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFQIRGKGYPSRIDALHV 60

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
              FD    +          L         ++      +       +L  +        +
Sbjct: 61  DQGFD---RSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTAN 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAR 143
              +     +              
Sbjct: 118 GHAVLDEGGNPMTIPPHQAMEIGS 141



 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/60 (11%), Positives = 22/60 (36%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               +      ++        V+    L  +I++++ + +  K+I   D   Q+    ++
Sbjct: 189 AQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQSANSMMR 248


>gi|150021011|ref|YP_001306365.1| flagellar basal-body rod protein FlgC [Thermosipho melanesiensis
          BI429]
 gi|149793532|gb|ABR30980.1| flagellar basal-body rod protein FlgC [Thermosipho melanesiensis
          BI429]
          Length = 137

 Score = 43.5 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTV 52
          M+   +   A    +    +   I  N+ N++         Y R+  +      NV  
Sbjct: 1  MNEFNIMTIAATGMSAQRLRIDVITNNLANSETTRTEKGEPYRRKVPVFQELLRNVRG 58



 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E+  +I  +++Y  +      T  M+ + L+  +
Sbjct: 98  NVNVVREMVDMINAQRAYEANVTAFNTTKAMINSALQIGR 137


>gi|269836598|ref|YP_003318826.1| hypothetical protein Sthe_0566 [Sphaerobacter thermophilus DSM
           20745]
 gi|269785861|gb|ACZ38004.1| protein of unknown function DUF1078 domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 247

 Score = 43.5 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 44/166 (26%), Gaps = 9/166 (5%)

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
              P      G      +    +  T     Q  ++   +   G         +    G 
Sbjct: 84  TGRPLDLAIAGTAFFAVQTPDDVQYTRDGRFQLDADRRLVTGDGFPVLGLNGPITLPEGD 143

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
             +        N               T +E    +   +E     S    +        
Sbjct: 144 IHVTADGTILVNGAPAGQLQLVEFPPDTPIEAVGQNRFAIEGAGQQSETAGVSQ------ 197

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
               +     V+L + +  +++  +SY ++ +++  +D  L T + 
Sbjct: 198 ---GFVEQSNVDLAQSMVEMLEASRSYALAQRMLQVSDATLGTAVN 240



 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/132 (8%), Positives = 29/132 (21%), Gaps = 9/132 (6%)

Query: 23  SIVRNIENADNKNYVRRDTMTTI---------SPENVTVVTQRSENKNMFDKVLHAHSSA 73
           +I  N+ N     Y  R T             +  + T +   S      ++ +     A
Sbjct: 21  TISENLANVSTPGYKARRTTVQDFREMFLSRFAGGSATPIGSISTAVRPEERAIDLSQGA 80

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           + +               A    ++       + +   +          +          
Sbjct: 81  LVETGRPLDLAIAGTAFFAVQTPDDVQYTRDGRFQLDADRRLVTGDGFPVLGLNGPITLP 140

Query: 134 VVQNFNTSAREV 145
                 T+   +
Sbjct: 141 EGDIHVTADGTI 152


>gi|148976395|ref|ZP_01813101.1| polar flagellar FlgF [Vibrionales bacterium SWAT-3]
 gi|145964218|gb|EDK29474.1| polar flagellar FlgF [Vibrionales bacterium SWAT-3]
          Length = 249

 Score = 43.5 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGMPTRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        + ++ +    +             L+       
Sbjct: 60  ERPGHNFAQGSVVTTGRDLDVTIQGDGWISVMDNTGREGL------TRNGNLKVDQNGLL 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 TNASG 118



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            + +       VN   E++ LI +++ + +  K++   ++M
Sbjct: 198 TLLKGAVEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|311105933|ref|YP_003978786.1| flagellar basal-body rod protein FlgC [Achromobacter xylosoxidans
          A8]
 gi|310760622|gb|ADP16071.1| flagellar basal-body rod protein FlgC [Achromobacter xylosoxidans
          A8]
          Length = 139

 Score = 43.5 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL++F+ A +  +  SQ+      N+ NA          Y  R  +  ++P     + 
Sbjct: 1  MSLLSIFDIAGSALSAQSQRMNVAASNMANADSVVGPDGKPYRARQVVFQVNPPAGQALG 60

Query: 55 QR 56
          Q 
Sbjct: 61 QE 62



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + Y +   V+   E   +I   +SY  + +++     ++Q  L
Sbjct: 92  QGYVSMPNVDPVAETVNMIAASRSYQANVEVLNTAKALMQKTL 134


>gi|298487854|ref|ZP_07005894.1| Flagellar basal-body rod protein flgF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157579|gb|EFH98659.1| Flagellar basal-body rod protein flgF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 258

 Score = 43.5 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/154 (7%), Positives = 33/154 (21%), Gaps = 12/154 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSAGAMVETGRELDIAVKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           + S   +       A    Q     A     IR+
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRS 148


>gi|251772446|gb|EES53013.1| flagellar basal-body rod protein FlgC [Leptospirillum
          ferrodiazotrophum]
          Length = 145

 Score = 43.5 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 6/61 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-NKN-----YVRRDTMTTISPENVTVVT 54
          M        + +       +   +  N+ NAD  +      Y RRD +        +   
Sbjct: 1  MGFSDAMRISASGLEAERVRLNVLAGNLANADATRGNPNGTYERRDVIFAAVAPGRSFSD 60

Query: 55 Q 55
           
Sbjct: 61 I 61


>gi|218288291|ref|ZP_03492590.1| flagellar basal-body rod protein FlgB [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218241650|gb|EED08823.1| flagellar basal-body rod protein FlgB [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 134

 Score = 43.5 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          M++  +    Q+  + ++ + A    NI NA    Y R+D       ++     
Sbjct: 1  MTVFELL---QSALDASTLRQAVYANNIANAGTPGYKRQDVAFETLLQSALGSG 51


>gi|188527163|ref|YP_001909850.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori
           Shi470]
 gi|188143403|gb|ACD47820.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori
           Shi470]
          Length = 269

 Score = 43.5 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMAAQFNRLDLTSNNLANLNTNGFKRDDAVTGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|86152073|ref|ZP_01070285.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124382|ref|YP_004066386.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840858|gb|EAQ58108.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018104|gb|ADT66197.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 750

 Score = 43.5 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/354 (8%), Positives = 107/354 (30%), Gaps = 3/354 (0%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D         +      +K        +   I     + ++ T +++ +   + +   
Sbjct: 399 MTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTT 458

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +  ++ +      ++  +  ST+   + +    T     +        +     S  +T
Sbjct: 459 LNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNSGVVTGSNDIT 518

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                  I          + +     +        +  + ++    +   +         
Sbjct: 519 YGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVT 578

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +S     + ++D             + T+   P +  + +        +   + ++ 
Sbjct: 579 DKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLD 638

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++       N   DS ++N     + G    +  L ++       +    +    ++ ++
Sbjct: 639 SMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRT 698

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  ++    SN + V+  E +  L++V+ +Y  S K      ++  +LL  +
Sbjct: 699 SFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|37360906|dbj|BAC98360.1| flagellar hook protein [Burkholderia glumae]
          Length = 40

 Score = 43.5 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             V+L  EL  LI  +++Y  + + I     + QTLL  
Sbjct: 2   STVDLTGELVNLITAQRNYQANAQTIKTQQTVDQTLLNL 40


>gi|209886824|ref|YP_002290681.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5]
 gi|209875020|gb|ACI94816.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5]
          Length = 243

 Score = 43.5 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/143 (6%), Positives = 27/143 (18%), Gaps = 12/143 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                     +   S+  N+ N     +                  + +++  M  + L 
Sbjct: 7   IGLAALIALRRHVDSVANNVANLTTPAFKAGRVQFKE----YLTEAEEADSPAMAKRSLV 62

Query: 69  AHSSAIGQQRLL--------QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           + S                        +     D               + +     +  
Sbjct: 63  STSHFTDFSVGGMRTTGNPLDVALTDDDAFFVVDTPGGPRYTRSGAFTLNADGKLATIDG 122

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
             +  ++     +      T A 
Sbjct: 123 KPVLTSIGHLVVQPRDGPVTIAG 145


>gi|332980933|ref|YP_004462374.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON]
 gi|332698611|gb|AEE95552.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON]
          Length = 262

 Score = 43.5 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 57/186 (30%), Gaps = 16/186 (8%)

Query: 308 AGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
             + + V   +    ++  DN     ++       +   N       G+ +      + N
Sbjct: 72  GVHVDQVKTDWFQGPLQQTDNTTDLALTGNGFFVLRVGQNDYRYTRDGAFAVDADGYLVN 131

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR--SDSHDLHMKS 425
             GY        + F    + +    ++    +    R   G +      +    L    
Sbjct: 132 QNGYRVQGYDNQNEFVDILVGNERFSVDPAGNIYTDQRQYAGTIAVEDFDNRDDALEKAG 191

Query: 426 QVVF--------------NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             ++                I + +     V++ +E++ +++V + Y  + +++   D+ 
Sbjct: 192 DNLYVVYDPEQYQSHPVGTGIKQGHIEVSNVDINKEITDMMEVYRHYESAQRIVSMLDQT 251

Query: 472 LQTLLE 477
           L   + 
Sbjct: 252 LDKTVN 257


>gi|294664592|ref|ZP_06729933.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605649|gb|EFF48959.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 249

 Score = 43.5 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VLDEGGNPMTIPPHQAMEIGS 141


>gi|197285512|ref|YP_002151384.1| flagellar basal-body rod protein [Proteus mirabilis HI4320]
 gi|227356003|ref|ZP_03840395.1| flagellar basal-body rod protein [Proteus mirabilis ATCC 29906]
 gi|194682999|emb|CAR43448.1| flagellar basal-body rod protein [Proteus mirabilis HI4320]
 gi|227163991|gb|EEI48893.1| flagellar basal-body rod protein [Proteus mirabilis ATCC 29906]
          Length = 134

 Score = 43.5 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT-ISPENVTVV 53
          MSL ++F+ + +  +  SQ+      N+ N           Y  +  +    +P    + 
Sbjct: 1  MSLFSIFDISGSALSAQSQRLNVSASNMANVDSVVGPDGEPYRAKQVVFQVNAPAGQDIG 60

Query: 54 TQ 55
            
Sbjct: 61 GV 62



 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V++  E+   I   +SY  + +++     ++Q  L
Sbjct: 95  NVDVVGEMINTISASRSYQANVEVMNTAKSLMQKTL 130


>gi|206975016|ref|ZP_03235931.1| putative flagellar basal-body rod protein [Bacillus cereus
           H3081.97]
 gi|217959255|ref|YP_002337803.1| flagellar basal body rod protein FlgG [Bacillus cereus AH187]
 gi|229138473|ref|ZP_04267062.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST26]
 gi|206747035|gb|EDZ58427.1| putative flagellar basal-body rod protein [Bacillus cereus
           H3081.97]
 gi|217066007|gb|ACJ80257.1| putative flagellar basal-body rod protein [Bacillus cereus AH187]
 gi|228645010|gb|EEL01253.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST26]
          Length = 257

 Score = 43.5 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 50/230 (21%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L                + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGANGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 INSDRYLQTSSGAYVMGENNERIRIPEGAKVAVQPDGTLYDEGTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              ++    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|283957136|ref|ZP_06374600.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791312|gb|EFC30117.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 749

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 36/358 (10%), Positives = 106/358 (29%), Gaps = 5/358 (1%)

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
              + D+A       +      +K        +   I     + ++ T +++ +   + +
Sbjct: 395 KSNMTDSAGNKANGADYDNVYFEKDGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGNSLN 454

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
               +  ++ +      ++  +  ST+   + +    T              +     S 
Sbjct: 455 GTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPITHTDPATGNSGVVTGSN 514

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI--GSF 301
            +T       I           ++     K      +S+  + ++    +   +   G  
Sbjct: 515 DITYGQINDIIGMFAADKIPTQSITAANGKVDANGYNSLQQLMKDSQATVDVSMDYKGRI 574

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           S  D ++  +     L  +                    N  + +N + + D  +V    
Sbjct: 575 SVTDKLSSGTNIGISLSDSQSGHFPQPPYTTTAQVENGPNFSFSANNALVIDEPNVDLIK 634

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +    A     +    +S +        A    +  L ++       +    +    +
Sbjct: 635 DLDTMIDAVLSGNMRADGNSADPRNTGMQGALERLDH-LADHISKLNTTMGAYHNTIDGV 693

Query: 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + +   +  ++    SN + V+  E +  L++V+ +Y  S K      ++  +LL  +
Sbjct: 694 NTRVNFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQL--SLLNYM 749


>gi|302384099|ref|YP_003819922.1| flagellar basal-body rod protein FlgC [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302194727|gb|ADL02299.1| flagellar basal-body rod protein FlgC [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 144

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 11/70 (15%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI----SPENVTV 52
           +    A +       +   I  NI NA+          Y R+  +           V++
Sbjct: 14 NSAMAVAASALTAQQSRMRIIAENIANAESTARTAGGQPYRRQIPVFEARQIDGATGVSL 73

Query: 53 VTQRSENKNM 62
             R +  + 
Sbjct: 74 AEVRPDQSDF 83


>gi|297584033|ref|YP_003699813.1| flagellar basal-body rod protein FlgC [Bacillus selenitireducens
          MLS10]
 gi|297142490|gb|ADH99247.1| flagellar basal-body rod protein FlgC [Bacillus selenitireducens
          MLS10]
          Length = 142

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 15/83 (18%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA-DNKN---------YVRRDTMTTISPENVTV 52
          +    N + +   +   +   +  N+ NA   +          Y R+      +  + + 
Sbjct: 1  MFHGMNVSASGLTSQRLRMDVVSSNMANAESTRGRFVDGEWEPYRRKMVTFEPNRTSGS- 59

Query: 53 VTQRSENKNMFDKVLHAHSSAIG 75
                  +    V    ++  G
Sbjct: 60 ----RFQDHFRHAVNRNATTGDG 78


>gi|84624089|ref|YP_451461.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161898986|ref|YP_201213.2| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368029|dbj|BAE69187.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 251

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VLDEGGNPMTIPPHQAMEIGS 141


>gi|291518271|emb|CBK73492.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4]
          Length = 267

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           + +       VN+ +E+  +I + ++Y    K+I   D  L+    
Sbjct: 217 VQQGMLEASNVNVIDEMVSMITIARAYEAGQKMIQAEDSTLEKTAN 262



 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/194 (7%), Positives = 35/194 (18%), Gaps = 23/194 (11%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-------------------- 45
               A     N  ++   +  N+ N+    Y +   +                       
Sbjct: 4   GLYTAYTGMVNEQKRMDVMTNNLANSATTGYKKEAMIAQAFDERLAIKIKDTSSWHNAPE 63

Query: 46  -SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                           N                   + F A++   +      +      
Sbjct: 64  GIGYISLGAKVGETYTNWDQGAFQITDKDSDVALAGRGFFAIE--FTNKAGETSIKYTRD 121

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                  + Y + +  D +         +  ++         K     D  I      + 
Sbjct: 122 GAFVVDRDGYLRTVDGDYVLTQEGAMNSQGGEDNYVQIDPNLKYVIATDGSIRQNGEEVT 181

Query: 165 RFLSELTVVNDAIK 178
                     D I 
Sbjct: 182 TIGVIDIDNYDYIN 195


>gi|253996321|ref|YP_003048385.1| flagellar basal-body rod protein FlgC [Methylotenera mobilis
          JLW8]
 gi|253983000|gb|ACT47858.1| flagellar basal-body rod protein FlgC [Methylotenera mobilis
          JLW8]
          Length = 135

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKNYVRRDTMTTISPE 48
          MSL  VFN + +  +  +Q+  ++  N+ NAD          Y  +  + +  P 
Sbjct: 1  MSLFNVFNISGSAMSAQAQRLNTVASNLANADSATSANGTP-YKSKQVVFSAMPS 54



 Score = 37.7 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + Y +   VN+ EE+  +I   ++Y  + + +  T  ML
Sbjct: 87  DKGYVSMPNVNVTEEMVNMISASRAYQNNVETMNATKTML 126


>gi|256376475|ref|YP_003100135.1| hypothetical protein Amir_2349 [Actinosynnema mirum DSM 43827]
 gi|255920778|gb|ACU36289.1| protein of unknown function DUF1078 domain protein [Actinosynnema
          mirum DSM 43827]
          Length = 132

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTISP--ENVTV 52
          M+L      A+   +   +   ++  NI N +N        +  R  +         VTV
Sbjct: 1  MALFDSIGIAETGVSVHRKWLDAVADNIANVNNATSTAGPAFQARYVVARSRGEDGGVTV 60

Query: 53 VTQ 55
             
Sbjct: 61 GGV 63


>gi|222147569|ref|YP_002548526.1| flagellar basal body rod protein FlgC [Agrobacterium vitis S4]
 gi|221734557|gb|ACM35520.1| flagellar basal-body rod protein [Agrobacterium vitis S4]
          Length = 145

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          L +    A +  +  S +   +  NI NA +         Y R+      
Sbjct: 10 LTSALKIAGSGLDVQSTRLRIVSENIANAQSTGDTPGANPYRRKTITFGS 59


>gi|78047585|ref|YP_363760.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036015|emb|CAJ23706.1| flagella basal body rod protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 251

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VLDEGGNPMTIPPHQAMEIGS 141


>gi|84502401|ref|ZP_01000537.1| flagellar basal body rod protein [Oceanicola batsensis HTCC2597]
 gi|84389213|gb|EAQ02010.1| flagellar basal body rod protein [Oceanicola batsensis HTCC2597]
          Length = 136

 Score = 43.5 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 10/88 (11%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTT---ISPENVTV 52
          L ++   + +      ++   +  N+ NA +         Y R+         S   V+ 
Sbjct: 4  LKSILTISASGMLAQGERLKVVSENVANASSTAMSPGEDPYRRKTITFEELLDSESGVST 63

Query: 53 VTQRSENKNMFDKVLHAHSSAIGQQRLL 80
          V   S +++  D  L    S        
Sbjct: 64 VGVSSIDRDDSDFSLRFEPSHPAADEQG 91


>gi|313905141|ref|ZP_07838510.1| flagellar basal-body rod protein FlgC [Eubacterium cellulosolvens
          6]
 gi|313470044|gb|EFR65377.1| flagellar basal-body rod protein FlgC [Eubacterium cellulosolvens
          6]
          Length = 151

 Score = 43.5 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISP 47
          MS L  F+ + +  +    +      NI N D         Y+R+D +     
Sbjct: 1  MSFLDSFDISASGMSAQRIRLDIAAENIANVDTTRTENGGPYIRKDVVLASYG 53


>gi|316932834|ref|YP_004107816.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          DX-1]
 gi|315600548|gb|ADU43083.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          DX-1]
          Length = 141

 Score = 43.5 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
          M        A +     + +   I  NI N    A       Y R+    T +
Sbjct: 6  MDFSRSMAIATSGLRAQAGRMRVISENIANADSTAQTAGGDPYRRKVPTFTSA 58


>gi|114562343|ref|YP_749856.1| flagellar basal body rod protein FlgF [Shewanella frigidimarina
           NCIMB 400]
 gi|114333636|gb|ABI71018.1| flagellar basal-body rod protein FlgF [Shewanella frigidimarina
           NCIMB 400]
          Length = 247

 Score = 43.5 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/126 (9%), Positives = 24/126 (19%), Gaps = 12/126 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +         A    N+ NA+   +       R                  S   
Sbjct: 5   LYIAMSGAKQGMNALAVSANNLANANTDGFKADMVQARSMQAFGEGLPTRVFSMMESPGS 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L+        N S 
Sbjct: 65  NFNGGPIKTTGRDLDIAVKGDGWLAVQ------AADGSEGYTRAGSLKIDSTGMLLNSSN 118

Query: 121 DILGKT 126
             +   
Sbjct: 119 RPVMGA 124



 Score = 36.5 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 21/50 (42%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +         VN   E+  +I +++ Y +  K++   +++ +     ++
Sbjct: 196 QVESGAVEGSNVNSVHEMVAMIDIQRQYEMQVKMMKNAEEIDRASTSLMR 245


>gi|229195985|ref|ZP_04322737.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1293]
 gi|228587367|gb|EEK45433.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1293]
          Length = 257

 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 48/222 (21%), Gaps = 18/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L                + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGANGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 INSDRYLQTSSGAYVMGENNERIRIPEGAKVAVQADGTLYDEGTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              ++    K  T ++ +  D  +   ++   + E   +   
Sbjct: 180 NSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMT 221



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGTGLVKNHMLENSNVDMTKEMADLMTNQRMISASQRVMTSFDKIYE 249


>gi|332994164|gb|AEF04219.1| flagellar basal-body rod protein FlgC [Alteromonas sp. SN2]
          Length = 140

 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  V + +       + +  +   NI NA+
Sbjct: 1  MSLFNVMSISSTGMEAENVRLNTTASNIANAN 32


>gi|315452789|ref|YP_004073059.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179]
 gi|315131841|emb|CBY82469.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179]
          Length = 163

 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRVRANLISSNIANANTTRTDEGGPYRRQEAIFKS 50


>gi|299131775|ref|ZP_07024970.1| flagellar basal-body rod protein FlgC [Afipia sp. 1NLS2]
 gi|298591912|gb|EFI52112.1| flagellar basal-body rod protein FlgC [Afipia sp. 1NLS2]
          Length = 141

 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
          M  L   + A +     + +   I  NI N    A       Y R+    + +
Sbjct: 5  MDFLKSMSIATSGLRAQAGRMRVISENIANADSTASTAGGDPYRRKVPTFSST 57


>gi|229160734|ref|ZP_04288726.1| Flagellar basal-body rod protein flgG [Bacillus cereus R309803]
 gi|228622749|gb|EEK79583.1| Flagellar basal-body rod protein flgG [Bacillus cereus R309803]
          Length = 257

 Score = 43.5 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 49/222 (22%), Gaps = 18/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 VNSDRYLQTSSGAFVMGENNERIRIPEGVKVAVQADGTLYDEITQNNIARLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              +V    K  T ++ +  D  +   ++   + E   +   
Sbjct: 180 NNRLVQRENKSFTLAEGNIADLPNGTGIVKNHMLENSNVDMT 221



 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 203 NGTGIVKNHMLENSNVDMTKEMADLMASQKMIQASQRIMTSFDKIYE 249


>gi|329890582|ref|ZP_08268925.1| flagellar basal-body rod protein FlgC [Brevundimonas diminuta
          ATCC 11568]
 gi|328845883|gb|EGF95447.1| flagellar basal-body rod protein FlgC [Brevundimonas diminuta
          ATCC 11568]
          Length = 144

 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 11/70 (15%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTI----SPENVTV 52
                A +       +   I  NI N    A+      Y R+  +           V +
Sbjct: 14 NTAMAVASSALKAQQSRMRIIAENIANAESTANVAGGQPYRRQTPVFQARNVDGATGVVL 73

Query: 53 VTQRSENKNM 62
             R +  + 
Sbjct: 74 AEVRPDQSDF 83


>gi|312126816|ref|YP_003991690.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776835|gb|ADQ06321.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 132

 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 16/92 (17%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
             I  NI NAD   Y  +D                        + L+            +
Sbjct: 23  EIISNNIANADTPGYKAKDLNFEA----------------YLQRSLNQEEGLQLFTTNER 66

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
             +      ++ +  ++S    + +    +E 
Sbjct: 67  HIKESSSPDNSIEVLDSSLQMRLDQNTVDIEQ 98


>gi|218778520|ref|YP_002429838.1| flagellar basal-body rod protein FlgC [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759904|gb|ACL02370.1| Flagellar basal-body rod protein FlgC [Desulfatibacillum
          alkenivorans AK-01]
          Length = 142

 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M LL   + + +  + +  Q   +  N+ NA+  
Sbjct: 1  MDLLNAMHASASALSVSRAQMNVVSENLANANTT 34


>gi|78776565|ref|YP_392880.1| flagellar basal body rod protein FlgC [Sulfurimonas denitrificans
          DSM 1251]
 gi|78497105|gb|ABB43645.1| Flagellar basal-body rod protein FlgC [Sulfurimonas denitrificans
          DSM 1251]
          Length = 164

 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 1  MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS     F+ +    +    +  +I +NI NA      +   Y R++ +   
Sbjct: 1  MSNFLNSFDISGYGLSAQRVRVNTISQNIANAQTTRTDEGGPYRRKEVVFKA 52


>gi|192360466|ref|YP_001982403.1| flagellar basal-body rod protein FlgB [Cellvibrio japonicus
           Ueda107]
 gi|190686631|gb|ACE84309.1| flagellar basal-body rod protein FlgB [Cellvibrio japonicus
           Ueda107]
          Length = 133

 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 3/115 (2%)

Query: 1   MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58
           MS+         ++     S++ + +  N+ N D  NY  RD     +     +      
Sbjct: 1   MSISFDKALGIHESALKFRSERASVLANNLANIDTPNYKARDVDFKQA-LGQQMKKAERF 59

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
           +    ++     S+ +G    L      +  +  +   +        K   + ++
Sbjct: 60  DVATTNEKHIPASTFVGVDEGLLYRVPQQPSIDGNTVEDQIEHAEYMKNALAFQA 114


>gi|89075496|ref|ZP_01161907.1| putative flagellar basal-body rod protein FlgF [Photobacterium sp.
           SKA34]
 gi|89048768|gb|EAR54339.1| putative flagellar basal-body rod protein FlgF [Photobacterium sp.
           SKA34]
          Length = 249

 Score = 43.5 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 7/130 (5%), Positives = 25/130 (19%), Gaps = 12/130 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +              N+ N     +       R          +       
Sbjct: 1   MDRALYLAMSGAKQDMYGMQVHANNLANVSTTGFRADLQQARSMQAYGEGLPSRVFSMAE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A+ ++   +             L+       +
Sbjct: 61  RPGNDFAQGSVINTGRDLDVAVEGDGWLAVMDVKGQEA------YTRAGHLKIDQTGMLQ 114

Query: 117 NLSEDILGKT 126
           N +  ++   
Sbjct: 115 NSNGQLVLGQ 124



 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 21/41 (51%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +++       VN   E++ +I +++ + +  KL+   ++M
Sbjct: 198 TLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEEM 238


>gi|325274798|ref|ZP_08140826.1| flagellar basal body rod protein FlgF [Pseudomonas sp. TJI-51]
 gi|324100066|gb|EGB97884.1| flagellar basal body rod protein FlgF [Pseudomonas sp. TJI-51]
          Length = 246

 Score = 43.5 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 51/241 (21%), Gaps = 17/241 (7%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVT 54
           +  +   A      +    A  +   N+ N     +       R   +   S        
Sbjct: 1   MDKLLYVAMTG--ASQNALAQKAHANNLANVSTNGFQRDLEQARSMPVFGDSFPARAFAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     L      +        F A++          +        L       
Sbjct: 59  TERPATDFTQGPLVETGRDLDVAVTGNGFIAVQ------APDGSEAYVRTGSLNIDALGV 112

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +  +   +       A    Q     +   +       D  +  E+  ++    ++  +
Sbjct: 113 LRAGNGMPVIGNGGPIAVPPEQKVEVGADGTLSIRSMGEDPRVIAEVDRIKLVNPDIKGL 172

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
              +     +        D    ++    E   ++ +    + + +       +      
Sbjct: 173 KKGLDGLIHTTSGQPADADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNTA 232

Query: 234 D 234
            
Sbjct: 233 K 233


>gi|254731831|ref|ZP_05190409.1| flagellar basal body rod protein FlgC [Brucella abortus bv. 4
          str. 292]
 gi|260759600|ref|ZP_05871948.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 4
          str. 292]
 gi|260669918|gb|EEX56858.1| flagellar basal-body rod protein FlgC [Brucella abortus bv. 4
          str. 292]
          Length = 140

 Score = 43.5 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 1  MS---LLAVFNKAQNICNNASQQFASIVRNIEN-------ADNKNYVRRDTMT-TISPEN 49
          MS   L +    A +  +  S +   +  NI N       AD   Y R+     T   + 
Sbjct: 1  MSSDALQSTLKIAASGLSTQSTRLRIVSENIANAQSTARTADTDPYRRKTVSFRTELEQG 60

Query: 50 VTVVTQRSE 58
                R  
Sbjct: 61 TGAAEVRVA 69


>gi|167645332|ref|YP_001682995.1| flagellar basal body rod protein FlgC [Caulobacter sp. K31]
 gi|167347762|gb|ABZ70497.1| flagellar basal-body rod protein FlgC [Caulobacter sp. K31]
          Length = 140

 Score = 43.5 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 7/58 (12%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
          A    A +       +   I  NI NA++         Y R+  +   +         
Sbjct: 10 ATMAIAASALKAQQGRMRVIAENIANANSTARVAGGDPYRRQVPVFKPTTLKGGGEGV 67



 Score = 36.9 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+   E   + + +++Y  +  +I  +  M    L+ ++
Sbjct: 100 NVDTLVEALDMKEAQRAYEANMNVIETSRAMESRTLDILR 139


>gi|163744319|ref|ZP_02151679.1| flagellar basal body rod protein [Oceanibulbus indolifex HEL-45]
 gi|161381137|gb|EDQ05546.1| flagellar basal body rod protein [Oceanibulbus indolifex HEL-45]
          Length = 136

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 11/64 (17%)

Query: 9  KAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI----SPENVTVVTQRS 57
           A +     + +   I  N+ NAD+         + R+    +     +     V   R 
Sbjct: 10 IAASGMTAQTARLRVISENVANADSTGTTPGADPFRRKTISFSELIDRNGGGSLVEVDRI 69

Query: 58 ENKN 61
              
Sbjct: 70 GRDQ 73


>gi|163802602|ref|ZP_02196494.1| flagellar L-ring protein precursor H [Vibrio sp. AND4]
 gi|159173685|gb|EDP58504.1| flagellar L-ring protein precursor H [Vibrio sp. AND4]
          Length = 249

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 10/129 (7%), Positives = 24/129 (18%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +        + ++ +      H           L+        
Sbjct: 61  RPGHNFAQGSVITTGRDLDVTIEGDGWISVMD------HTGKEGLTRNGNLKVDQNGLLT 114

Query: 117 NLSEDILGK 125
           N S  ++  
Sbjct: 115 NASGHVVLG 123



 Score = 40.8 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM---LQTLLEG 478
            I         VN   E++ LI +++ + +  K++   ++M     +LL  
Sbjct: 198 SIQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDKSSDSLLRM 248


>gi|328958263|ref|YP_004375649.1| flagellar basal-body rod protein FlgG [Carnobacterium sp. 17-4]
 gi|328674587|gb|AEB30633.1| flagellar basal-body rod protein FlgG [Carnobacterium sp. 17-4]
          Length = 240

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/220 (8%), Positives = 43/220 (19%), Gaps = 12/220 (5%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN------------VTVVTQRSENKN 61
            N    Q  ++  +I N +   Y  ++        N            V        +K+
Sbjct: 1   MNAIQNQMDAVSNDIANINTTGYKSKNISFNELLLNDLNGEADYLSDTVQDAGINRGSKS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                     S I          A +                      + +    N + D
Sbjct: 61  GVTSTNFTQGSLISDPNDYHLAIAGEGFFGVIGENGERYLTRDGAFHVNGDKSITNDNGD 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
            L         +  +   + A   +      +    +    L        +        +
Sbjct: 121 TLEIQTTIPTNQWPEGDVSIAENGEVTIHSENGSTLVGTIPLFHPAQTNALEPVGENKYS 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYT 221
            +          +   L+  +  +  S             
Sbjct: 181 YNGAFGTGEGSIQQNYLEASNVDLASSITEMMLAQRSYSL 220



 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 53/191 (27%), Gaps = 2/191 (1%)

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
             +               G  S          +     +A   +     + +     +  
Sbjct: 43  DYLSDTVQDAGINRGSKSGVTSTNFTQGSLISDPNDYHLAIAGEGFFGVIGENGERYLTR 102

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400
           +  +  N        +     +        +P+       + N         G     T+
Sbjct: 103 DGAFHVNGDKSITNDNGDTLEIQTTIPTNQWPEG--DVSIAENGEVTIHSENGSTLVGTI 160

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             +       LE    + +  +         I ++Y     V+L   ++ ++  ++SY++
Sbjct: 161 PLFHPAQTNALEPVGENKYSYNGAFGTGEGSIQQNYLEASNVDLASSITEMMLAQRSYSL 220

Query: 461 SNKLIMFTDKM 471
           + K+   TD+M
Sbjct: 221 NLKVAQGTDEM 231


>gi|289666048|ref|ZP_06487629.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 251

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 27/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +                    
Sbjct: 121 VLDEGGTPMTIPPHQAMEIGS 141


>gi|288553067|ref|YP_003425002.1| flagellar basal body rod protein FlgC [Bacillus pseudofirmus OF4]
 gi|288544227|gb|ADC48110.1| flagellar basal body rod protein FlgC [Bacillus pseudofirmus OF4]
          Length = 151

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+L + FN + +       +   I  N+ NA+  
Sbjct: 1  MTLFSGFNASASALTTQRLRMDVISSNMANAETT 34


>gi|317051987|ref|YP_004113103.1| flagellar basal body rod protein [Desulfurispirillum indicum S5]
 gi|316947071|gb|ADU66547.1| flagellar basal body rod protein [Desulfurispirillum indicum S5]
          Length = 129

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 5/48 (10%), Positives = 15/48 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50
          ++  F  A +       + ++   N+ N +   +  +   T       
Sbjct: 1  MVDAFYNAASAIKTYGFRQSASAHNVANVNTDGFKSQRVDTAEGVSGG 48


>gi|52080221|ref|YP_079012.1| flagellar basal body rod protein FlgC [Bacillus licheniformis
          ATCC 14580]
 gi|52785598|ref|YP_091427.1| flagellar basal body rod protein FlgC [Bacillus licheniformis
          ATCC 14580]
 gi|319646000|ref|ZP_08000230.1| flagellar basal-body rod protein [Bacillus sp. BT1B_CT2]
 gi|52003432|gb|AAU23374.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC
          14580]
 gi|52348100|gb|AAU40734.1| FlgC [Bacillus licheniformis ATCC 14580]
 gi|317391750|gb|EFV72547.1| flagellar basal-body rod protein [Bacillus sp. BT1B_CT2]
          Length = 150

 Score = 43.5 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M +    N + +       +  ++  N+ N D  
Sbjct: 1  MGVFNSINISASALTAQRVRMDTVSSNLANMDTT 34


>gi|238927618|ref|ZP_04659378.1| possible flagellar basal-body rod protein [Selenomonas flueggei
           ATCC 43531]
 gi|238884543|gb|EEQ48181.1| possible flagellar basal-body rod protein [Selenomonas flueggei
           ATCC 43531]
          Length = 266

 Score = 43.5 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             I +        ++  E+  LI   + Y   +K +   D +L   + 
Sbjct: 213 GVIEQGMLEMSNTSVVTEMVELINNYRVYEAGSKAVQTQDTLLDKAVN 260



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 32/143 (22%), Gaps = 13/143 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A +     ++    I  N+ NA    + R D                 E + M
Sbjct: 1   MWRGLYIAASGMITETKHTDMIANNLANAATTGFKRDDMAI-------------REFEPM 47

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + ++ HS+                 +       ++     +         + N  +  
Sbjct: 48  LLRRINDHSADTDVTSFKGFRLRSGAPIVGTLGLGSAVDEIATDHLQGALQATGNTYDFG 107

Query: 123 LGKTVIDNAEEVVQNFNTSAREV 145
           +        +       T     
Sbjct: 108 ISGQGYFVVDTPQGPRYTRDGSF 130


>gi|268589984|ref|ZP_06124205.1| flagellar basal-body rod protein FlgC [Providencia rettgeri DSM
          1131]
 gi|291314702|gb|EFE55155.1| flagellar basal-body rod protein FlgC [Providencia rettgeri DSM
          1131]
          Length = 134

 Score = 43.5 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          M+LL++F+ + +     SQ+      N+ NA++        Y  +  +  ++P+    V 
Sbjct: 1  MALLSIFDISASALTAQSQRLNVSASNMANAESIAGPDGQPYRAKQVVFQMAPQGRHEVG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSELIED 70



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            + Y     V++  E+   I   +SY  + +++     +LQ  L
Sbjct: 87  EKGYVQMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTL 130


>gi|289433960|ref|YP_003463832.1| flagellar basal-body rod protein, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|315301915|ref|ZP_07872926.1| flagellar basal body rod protein FlgG [Listeria ivanovii FSL
           F6-596]
 gi|289170204|emb|CBH26744.1| flagellar basal-body rod protein, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313629711|gb|EFR97833.1| flagellar basal body rod protein FlgG [Listeria ivanovii FSL
           F6-596]
 gi|313634394|gb|EFS00983.1| flagellar basal body rod protein FlgG [Listeria seeligeri FSL
           N1-067]
          Length = 259

 Score = 43.5 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 16/218 (7%), Positives = 43/218 (19%), Gaps = 15/218 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQ 55
                     N  Q       N+ NA    +           +       +P    V T 
Sbjct: 3   GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISKNKVNYQNNPVAKQVGTI 62

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDS 110
               +     +     S+    R    F                           +    
Sbjct: 63  DYGVRPAATHINLTAGSSYITNRDRDFFMQDANPEQGSNFFITAKNGEISLSRGGQFHSD 122

Query: 111 LESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSEL 170
              + +      L     +  +  V+    +        A+ +  +    +         
Sbjct: 123 QFGFLRTADGANLLSATGEAVQVGVKTSIRAEANGALYNAETNAYLGRLGTRFVSADQVD 182

Query: 171 TVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
            +  D       +  +  +    + ++   + E   + 
Sbjct: 183 NLAKDGEGRLHVNGTNTMNLPAGQGIIQNGVLETSNVD 220


>gi|260222469|emb|CBA32064.1| Flagellar basal-body rod protein flgF [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 246

 Score = 43.5 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 32/139 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A    N A+ + + +  N+ N     +  +       P      T R      
Sbjct: 1   MDRLIYTAMTGANAAASRQSVLANNLANVSTNGFRAQLATYRAVPLRGEGATTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L+    A+   R L         ++               +  + +      +   
Sbjct: 61  TAGHLNTPGPAMRTDRSLDVMAKGDAWLTVQGLDGTEAYTRNGHIEVATDGTLTTGNGLQ 120

Query: 123 LGKTVIDNAEEVVQNFNTS 141
           +  +             T 
Sbjct: 121 VLSSDGSPITSPAGAELTV 139


>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040362|gb|ACT57158.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score = 43.5 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 30/121 (24%), Gaps = 1/121 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-QRSENKN 61
           +   FN          Q+ +++  N+ N D   +       +     +     Q+     
Sbjct: 1   MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              + L     +         F    +   A +           + + + +    + S  
Sbjct: 61  SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120

Query: 122 I 122
            
Sbjct: 121 Y 121


>gi|327441421|dbj|BAK17786.1| flagellar basal body rod protein [Solibacillus silvestris StLB046]
          Length = 280

 Score = 43.5 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 66/253 (26%), Gaps = 6/253 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F           ++   +  N+ NA+   +    T     P+ + +    S N   
Sbjct: 1   MFKGFYTVATGMVAQQRKTEILTNNMANANTPGFKSDQTTIRSFPD-MLMSAVNSTNIPT 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +     + + +G        +           Y+      I+ +  S+ +   + +   
Sbjct: 60  ENGFAIKNLNPVGAVNAGVYLQETMPNQVQGQIYSTGLNTDIALINSSMPTDEASGNSGQ 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   + + +             +       + +    + +      +    N  I   ++
Sbjct: 120 IFFRLENESGT-ESYTRNGNFTLDGQGNLVNPQGLF-VLDANGERMQFDNDNIRI---SS 174

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                 +   Q   L    SE   +     N     +   D  + +       + ++   
Sbjct: 175 DGAIFDENDVQVGTLGVAFSENPDVLVKRDNGLFNTLDGVDLPSAYGQANVQFSMQQQYL 234

Query: 243 YTVTSESNPIFID 255
                +++    D
Sbjct: 235 EGSNVDASKAMTD 247



 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 76/278 (27%), Gaps = 23/278 (8%)

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           ++    T     V +    E + +    + +     D   + S     +       +   
Sbjct: 1   MFKGFYTVATGMVAQQRKTEILTNNMANANTPGFKSDQTTIRSFPDMLMSAVNSTNIPTE 60

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
               +          A V +                    IA     +      G S  I
Sbjct: 61  NGFAIKNLNPVGAVNAGVYLQETMPNQVQGQIYSTGLNTDIALINSSMPTDEASGNSGQI 120

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
               +  S        G+ +     N+ N  G    +     +  +    +    I+++ 
Sbjct: 121 FFRLENESGTESYTRNGNFTLDGQGNLVNPQG----LFVLDANGERMQFDNDNIRISSDG 176

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHM-------------------KSQVVFNHISESYSNT 439
            + +     +G L    S++ D+ +                       V   + + Y   
Sbjct: 177 AIFDENDVQVGTLGVAFSENPDVLVKRDNGLFNTLDGVDLPSAYGQANVQFSMQQQYLEG 236

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
             V+  + ++ L+   +++  + K++   DK ++  + 
Sbjct: 237 SNVDASKAMTDLLTAYRAFEANQKVLQAYDKSMEKAVN 274


>gi|207110317|ref|ZP_03244479.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 113

 Score = 43.5 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|146305251|ref|YP_001185716.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp]
 gi|145573452|gb|ABP82984.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp]
          Length = 243

 Score = 43.5 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 44/161 (27%), Gaps = 11/161 (6%)

Query: 10  AQNICNNASQ---QFASIVRNIENADNKNYVRRDTMTTIS----PENVTV---VTQRSEN 59
                  AS+          N+ N +   + R D     +                ++  
Sbjct: 5   GYTAMTAASRTMSSLTVRANNLANVNTPGF-RADLEQAQAVAVEGYGYDSRHLAQVKNNG 63

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            ++    L A    +      Q   A++    A+ +  N      + LR +L   +    
Sbjct: 64  VSLAPGALMATGRDLDVAIQGQGLFAVEGDDGAERYTRNGALQVDADLRLTLNGRAVLGE 123

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
              +     D+         +       + A+ D+   +++
Sbjct: 124 GGPIVLPEYDSLHIGRDGTVSVIPRGDFLTAEVDRIRVVDV 164


>gi|317179250|dbj|BAJ57038.1| flagellar basal-body rod protein [Helicobacter pylori F30]
          Length = 269

 Score = 43.1 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/194 (8%), Positives = 40/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +   I  N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMAAQFNRLDLISNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|260772275|ref|ZP_05881191.1| flagellar basal-body rod protein FlgF [Vibrio metschnikovii CIP
           69.14]
 gi|260611414|gb|EEX36617.1| flagellar basal-body rod protein FlgF [Vibrio metschnikovii CIP
           69.14]
          Length = 249

 Score = 43.1 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM---LQTLLEG 478
           +         VN   E++ LI +++ + +  K++   ++M     +LL  
Sbjct: 199 VLTGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEMDKASDSLLRM 248



 Score = 43.1 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 23/125 (18%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGF-RADLEQARSMQAYGEGLPSRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                      +      +        + ++ +         N        LR       
Sbjct: 60  ERPGHRFDQGSVITTGRELDITIQGDGWISVLDK------TGNEGLTRSGNLRIDQNGLL 113

Query: 116 KNLSE 120
            N + 
Sbjct: 114 LNGNG 118


>gi|255305269|ref|ZP_05349441.1| flagellar basal-body rod protein [Clostridium difficile ATCC
          43255]
          Length = 105

 Score = 43.1 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            ++  +   +  + +  +I  NI N + + Y R       +
Sbjct: 2  NTYDIIKMALDATNLRSQTIANNIANINTEGYKRHYVTFEET 43


>gi|90579910|ref|ZP_01235718.1| putative flagellar basal-body rod protein FlgF [Vibrio angustum
           S14]
 gi|90438795|gb|EAS63978.1| putative flagellar basal-body rod protein FlgF [Vibrio angustum
           S14]
          Length = 249

 Score = 43.1 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 7/130 (5%), Positives = 25/130 (19%), Gaps = 12/130 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +              N+ N     +       R          +       
Sbjct: 1   MDRALYLAMSGAKQDMYGMQVHANNLANVSTTGFRADLQQARSMQAYGEGLPSRVFSMAE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A+ ++   +             L+       +
Sbjct: 61  RPGNDFAQGSVINTGRDLDVAVEGDGWLAVMDVKGQEA------YTRAGHLKIDQTGMLQ 114

Query: 117 NLSEDILGKT 126
           N +  ++   
Sbjct: 115 NSNGQLVLGQ 124



 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 21/41 (51%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +++       VN   E++ +I +++ + +  KL+   ++M
Sbjct: 198 TLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEEM 238


>gi|224417697|ref|ZP_03655703.1| flagellar basal body rod protein FlgC [Helicobacter canadensis
          MIT 98-5491]
 gi|253827046|ref|ZP_04869931.1| flagellar basal body rod protein [Helicobacter canadensis MIT
          98-5491]
 gi|313141240|ref|ZP_07803433.1| flagellar basal body rod protein FlgC [Helicobacter canadensis
          MIT 98-5491]
 gi|253510452|gb|EES89111.1| flagellar basal body rod protein [Helicobacter canadensis MIT
          98-5491]
 gi|313130271|gb|EFR47888.1| flagellar basal body rod protein FlgC [Helicobacter canadensis
          MIT 98-5491]
          Length = 166

 Score = 43.1 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 17/92 (18%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVTQRS 57
          L+ F+ +    +   Q+   I  NI NA+     +   Y RR+ +               
Sbjct: 3  LSSFDISGYGLSAQRQRVNLISSNIANANTTRTDEGGPYRRRELILKAF----------- 51

Query: 58 ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
          +   + ++     ++ +  +  L   ++  E 
Sbjct: 52 DFDKVLNQKYQKSNNLLKYEDPLDEMDSFNEQ 83


>gi|315638380|ref|ZP_07893558.1| flagellin B family protein [Campylobacter upsaliensis JV21]
 gi|315481508|gb|EFU72134.1| flagellin B family protein [Campylobacter upsaliensis JV21]
          Length = 750

 Score = 43.1 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 33/354 (9%), Positives = 97/354 (27%), Gaps = 4/354 (1%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D+A       +      +K        +   I     + ++ T +++ +         
Sbjct: 400 MTDSAGNATNGADYDNTFFEKHGNSVIGNVSQVIQGTNAYATDDTKLSEVMSGNAMDSTL 459

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET-VPRDINFEKMNSYTV 245
                 +          +   +    +  +     +   T        +      N  T 
Sbjct: 460 NLTVNSKGGNTYNVTVNLQNSTVSFPDPANPGQTITFPITHTNPATGNNGVVTPPNEITY 519

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
              ++ I +        Q      G+I          +         +     G  S  D
Sbjct: 520 RQINDIIGMFASDQVPTQTITPNNGQITNAQYDTLQKLMSDSKSTVNVTMDYRGRISVTD 579

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            ++  +     L  +   +          ++    +  + +N S + D  +V      ++
Sbjct: 580 KLSTGTNIGVSLSDSQSGQFPQPPYNHTANQVAGPDFSFNANNSLVIDEPNVDVIKDLDL 639

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
              A     +    D+ N        A    +  L ++       +    ++  +++ + 
Sbjct: 640 MIEAVLSGNMRANADADNPRNTGMQGALERLDH-LSDHINKLNTTMGAYHNNIDNVNTRV 698

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  ++    +     +  E L  L++ + +Y  S K      ++  +LL  +
Sbjct: 699 TFLGVNVQTLKTKVNDADYGETLMNLMQTQLAYQASMKATTTISQL--SLLNYM 750


>gi|228964727|ref|ZP_04125834.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228794977|gb|EEM42476.1| Flagellar basal-body rod protein FlgC [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 128

 Score = 43.1 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          +    N + +    A +       NI NA+         Y RR  +   +
Sbjct: 1  MFQAINASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESN 50


>gi|227873523|ref|ZP_03991768.1| possible flagellar basal body rod protein [Oribacterium sinus
           F0268]
 gi|227840613|gb|EEJ50998.1| possible flagellar basal body rod protein [Oribacterium sinus
           F0268]
          Length = 263

 Score = 43.1 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 24/40 (60%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +      + G ++ +E++ LI+ ++++  + K++  +D++
Sbjct: 215 LESGTLESSGTDMAKEMTRLIESQRAFTYALKMVQTSDEV 254



 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 8/122 (6%), Positives = 23/122 (18%), Gaps = 18/122 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS--------------PE 48
           +   F       + + ++   I  N+ N +N  +  ++ + +                 +
Sbjct: 1   MNMSFYVGALGADASQKKMGVISNNLANINNTAFKPKNAIFSDLINYNLNDSPEAKTDLQ 60

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                     N        H             +     +    D               
Sbjct: 61  AEAGTAVVRTNTEYSPAAFHTTGQPNDYAIGNANAFFKLQ----DPSSGEITYTRNGHFH 116

Query: 109 DS 110
             
Sbjct: 117 AG 118


>gi|218290052|ref|ZP_03494219.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239886|gb|EED07074.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 403

 Score = 43.1 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 18/48 (37%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
                +      +  VN+   ++ +++   +Y  + ++    D ML  
Sbjct: 345 ASTGRMVFGALESSNVNVAATMAQMMQALNAYEANQRVAQSVDSMLNV 392


>gi|152975186|ref|YP_001374703.1| flagellar basal body rod protein FlgG [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023938|gb|ABS21708.1| flagellar basal body rod protein [Bacillus cytotoxicus NVH 391-98]
          Length = 257

 Score = 43.1 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 49/230 (21%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM----------------TTISPE 48
                      N  Q       N+ NA    +   +                  +T    
Sbjct: 2   NGIYIGSMGMMNYIQHINVHANNVANAQTPGFKAENLTSKVFDSQNTYRLGDGPSTSVGT 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +        L    +             +      +  
Sbjct: 62  TDYAVVPAATHVNLIQGSVQITNRPTDFY--LDDGTSGTASFFVTSKGGETFLTRDGQFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A +   I    + +     
Sbjct: 120 INEDRYLQTSSGAYVLGENHERIRIPEGTKVKVQEDGMLYDAVSQNHIARLQTKMVNTEV 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ D  D  +    +   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGDIADLPNGTGAVRNYMLENSNVDMTKEMADIMT 229



 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ ++  ++    S +++   DK+ +
Sbjct: 203 NGTGAVRNYMLENSNVDMTKEMADIMTNQKMVQASQRIMTSFDKIYE 249


>gi|115523571|ref|YP_780482.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          BisA53]
 gi|115517518|gb|ABJ05502.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          BisA53]
          Length = 141

 Score = 43.1 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
          M        A +     + +   I  NI N    A       Y R+    T +
Sbjct: 6  MDFSRSMAIATSGLRAQAGRMRVIAENIANAQSTAQTAGGDPYRRKVPTFTTA 58


>gi|90408058|ref|ZP_01216229.1| flagellar basal-body rod protein FlgC [Psychromonas sp. CNPT3]
 gi|90310815|gb|EAS38929.1| flagellar basal-body rod protein FlgC [Psychromonas sp. CNPT3]
          Length = 140

 Score = 43.1 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 40/116 (34%)

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
               +     + ++   +   +       A +N     L  +   +  L    SD+    
Sbjct: 22  NTTASNLANANSVSSSSEKTYRARHPVFAAELNKAKGALSSSGVGVKVLGIVESDAPLAR 81

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             +    +   + +     VN+ EE++ +I   +SY  + ++     +ML   L+ 
Sbjct: 82  EYAPNSPSADKDGFVYHSNVNVMEEMANMISASRSYQTNVQIADAAKQMLSRTLQM 137



 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  + + +    +  S +  +   N+ NA+
Sbjct: 1  MSLFRILDISATGMSAQSVRLNTTASNLANAN 32


>gi|38570329|gb|AAR24612.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni]
          Length = 270

 Score = 43.1 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|152980444|ref|YP_001353109.1| FlgC flagellar basal body rod protein [Janthinobacterium sp.
          Marseille]
 gi|151280521|gb|ABR88931.1| FlgC flagellar basal body rod protein [Janthinobacterium sp.
          Marseille]
          Length = 135

 Score = 43.1 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTI--SPENVTV 52
          MSL  +FN + +  +  SQ+   +  NI NA++        Y  +             T 
Sbjct: 1  MSLFNIFNVSGSAMSAQSQRLNVVSSNIANAESTTSADGKTYRAKQVEFQAQQMKGGATS 60

Query: 53 VTQRSEN 59
             R   
Sbjct: 61 TGVRVNR 67



 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              +     VN+ EE+  +I   +SY  + + +     ML
Sbjct: 88  ETGHVAMPNVNVVEEMVNMISASRSYQTNVETMNTAKTML 127


>gi|88858142|ref|ZP_01132784.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas tunicata D2]
 gi|88819759|gb|EAR29572.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas tunicata D2]
          Length = 255

 Score = 43.1 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 19/46 (41%)

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +   +         VN  +E+  +I  ++ + +  K++   +KM
Sbjct: 199 TNLEVQVISGALEMSNVNPVDEMVGMIAHQRQFELQVKMMKTAEKM 244


>gi|289208115|ref|YP_003460181.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. K90mix]
 gi|288943746|gb|ADC71445.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. K90mix]
          Length = 246

 Score = 43.1 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 52/242 (21%), Gaps = 13/242 (5%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK------ 60
              A +         +    N+ NA+   + +        P    V   R   +      
Sbjct: 5   LYIAMSGAKETMHAQSVNNHNLANANTDGFRQALANANTVPVRGPVFDSRDYAQLGTDGT 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     + +    +      Q F A++                   L        +    
Sbjct: 65  DFSKGQMQSTGRDLDIAIEDQGFIAVQ------GPDGEEGYTRAGSLHVDAFGLLRTAQG 118

Query: 121 DILGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +       A    +     +   +         E    I  +R    ++  +      
Sbjct: 119 HQVLGDGGPIAIPPSEKIEIGTDGTISVRPQGVGPEALAAIERIRLVNPDVNELERGDDG 178

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
                       D    ++  + E   ++T+      + +       +      +   + 
Sbjct: 179 LFRMADGGEAPPDAEVRVVSGMLEGSNVNTVEALTRMIELSRHFEMQVKMMDSANTLEQS 238

Query: 240 MN 241
            N
Sbjct: 239 SN 240


>gi|83309714|ref|YP_419978.1| flagellar basal body rod protein FlgC [Magnetospirillum
          magneticum AMB-1]
 gi|82944555|dbj|BAE49419.1| Flagellar basal body rod protein [Magnetospirillum magneticum
          AMB-1]
          Length = 136

 Score = 43.1 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 13/77 (16%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN-----KN--YVRRDTMT------TISPEN 49
          L      A +     SQ+   I  N+ NAD+     +   Y R+                
Sbjct: 4  LSKSTQTAISGMKVQSQRLRVISENLANADSLAQTPEGLPYRRKVMTFKNELDRATGTNV 63

Query: 50 VTVVTQRSENKNMFDKV 66
          V V   R+++     + 
Sbjct: 64 VKVDKVRADSAEFQRRY 80



 Score = 40.0 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E+  + + ++SY  +  +I  +  +L   +E ++
Sbjct: 97  NVNPLIEMMDMREAQRSYEANMNVINASRSLLSRTIEMLR 136


>gi|220904841|ref|YP_002480153.1| flagellar basal-body rod protein FlgC [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869140|gb|ACL49475.1| flagellar basal-body rod protein FlgC [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 145

 Score = 43.1 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M  +  F+ + +       +  +I  N+ NA          Y RR  +   +
Sbjct: 1  MDFMTAFDISASGLAADRTRINTISMNLANAKTTRTPLGGPYRRRSVVQQTA 52


>gi|168180911|ref|ZP_02615575.1| flagellar basal-body rod protein FlgC [Clostridium botulinum NCTC
          2916]
 gi|182668190|gb|EDT80169.1| flagellar basal-body rod protein FlgC [Clostridium botulinum NCTC
          2916]
          Length = 144

 Score = 43.1 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
                + +  +    +  +I  NI NA          Y R+  + 
Sbjct: 5  FDTMRISASGLSAERLRMDTIASNIANATTTRTENGGPYKRKIAVF 50


>gi|120613060|ref|YP_972738.1| Fis family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120591524|gb|ABM34964.1| transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1]
          Length = 246

 Score = 43.1 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 30/141 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    + A+Q+ A +  N+ NA    +    +     P        R      
Sbjct: 1   MDHIIYTSMTGASAAAQRQAVLANNLANASTNGFRAEMSTFRSVPVQGDGSKTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +          R L +        +                  + E   +  +   
Sbjct: 61  TSGHVETPGPVQRTGRNLDAMAVGNAWFAVQGLDGTEAYTRNGSFEVNAEGQLRTSNGLT 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +       T   
Sbjct: 121 VLSDGGGPIDVPPGADVTLGS 141


>gi|127512280|ref|YP_001093477.1| flagellar basal body rod protein FlgF [Shewanella loihica PV-4]
 gi|126637575|gb|ABO23218.1| flagellar basal-body rod protein FlgF [Shewanella loihica PV-4]
          Length = 247

 Score = 43.1 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/131 (7%), Positives = 28/131 (21%), Gaps = 12/131 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A +         A    N+ NA+   +       R                  
Sbjct: 1   MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKSDLEQARSMQAFGEGLPTRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N     +      +        + A++ +   +             L        +
Sbjct: 61  NPSANFAAGPIKTTGRDLDIAVKGDGWIAVQAVDGGEA------YTRSGSLSFDTSGLLR 114

Query: 117 NLSEDILGKTV 127
           N   + +    
Sbjct: 115 NDRGNPVMGDA 125



 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 22/50 (44%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +         VN  +E+  LI +++ + +  K++   ++M Q     ++
Sbjct: 196 AVESGAIEGSNVNAVDEMVSLIDLQRQFEMQVKMMKTAEEMDQASSSLMR 245


>gi|315929130|gb|EFV08357.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 270

 Score = 43.1 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|316932824|ref|YP_004107806.1| flagellar basal-body rod protein FlgF [Rhodopseudomonas palustris
           DX-1]
 gi|315600538|gb|ADU43073.1| flagellar basal-body rod protein FlgF [Rhodopseudomonas palustris
           DX-1]
          Length = 253

 Score = 43.1 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 10/130 (7%), Positives = 29/130 (22%), Gaps = 6/130 (4%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKNMFDKVLHAH-----SS 72
           +Q   +  N+ N     +    +M                 ++ +      A      + 
Sbjct: 17  RQMDVVANNLANISTNGFKAERSMFQEFLNTGAHEDNFPRPDRRVSFVQDRATYHDLSTG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
           ++ Q +                            L+ + +    N S   +  T      
Sbjct: 77  SLQQTKNPLDIAIDGPGFLVVQTPQGERFTRDGSLKINAQGQLVNSSGFPVLGTGGPIVI 136

Query: 133 EVVQNFNTSA 142
           +      + +
Sbjct: 137 QPTDKELSIS 146


>gi|326319098|ref|YP_004236770.1| flagellar basal-body rod protein FlgF [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375934|gb|ADX48203.1| flagellar basal-body rod protein FlgF [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 246

 Score = 43.1 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 30/141 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    + A+Q+ A +  N+ NA    +    +     P        R      
Sbjct: 1   MDHIIYTSMTGASAAAQRQAVLANNLANASTNGFRAEMSTFRSVPVQGDGSKTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +          R L +        +                  + E   +  +   
Sbjct: 61  TSGHVETPGPVQRTGRNLDAMAVGNAWFAVQGLDGTEAYTRNGSFEVNAEGQLRTSNGLT 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +       T   
Sbjct: 121 VLSDGGGPIDVPPGADVTLGS 141


>gi|209964219|ref|YP_002297134.1| flagellar basal-body rod protein FlgC [Rhodospirillum centenum
          SW]
 gi|209957685|gb|ACI98321.1| flagellar basal-body rod protein FlgC [Rhodospirillum centenum
          SW]
          Length = 136

 Score = 43.1 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTIS 46
          M L+   + +         +   I  N+ NA+          Y R+  +    
Sbjct: 1  MDLMNTLSLSAAGLKVQGTRLRVIAENLANANSTAPTPGDLPYRRKVVLFQNV 53



 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E   + + ++SY  +  +I  T +ML   +E ++
Sbjct: 96  NVNSLVESMDMREAQRSYEANLNVIDTTRQMLTRTIELLR 135


>gi|89068730|ref|ZP_01156116.1| flagellar basal-body rod protein FlgF [Oceanicola granulosus
           HTCC2516]
 gi|89045693|gb|EAR51755.1| flagellar basal-body rod protein FlgF [Oceanicola granulosus
           HTCC2516]
          Length = 248

 Score = 43.1 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 15/170 (8%), Positives = 48/170 (28%), Gaps = 3/170 (1%)

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           D           L +A       +   Q   +    + ++  +        + ++     
Sbjct: 68  DSQGPVRNTGNVLDVALQGPGWFSYQTQDGQQAFGRDGRFAVDAQGNLVTQAGARVLDAG 127

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
            + +A  PD +     + +          +            S   +      +      
Sbjct: 128 GQPIALPPDAVAELVIADDGTLSSPATGALGRLGVFDVPDLKSYTRIGAGMFVAPAEADV 187

Query: 425 SQ---VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +     +   + +       V    E++ ++ +++SY  + KL+   D++
Sbjct: 188 AAPLPDLATKVVQGALEGSNVQPIVEMTRMMAIQKSYEQATKLMGTGDEL 237


>gi|154686035|ref|YP_001421196.1| flagellar basal body rod protein FlgC [Bacillus amyloliquefaciens
          FZB42]
 gi|154351886|gb|ABS73965.1| FlgC [Bacillus amyloliquefaciens FZB42]
          Length = 150

 Score = 43.1 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 10/57 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISP 47
          MS     N + +       +   +  N+ N D             Y R+        
Sbjct: 1  MSGFQSLNISGSALTAQRVRMDVVSSNLANMDTTRAKQVNGEWVPYRRKLVSLQSGG 57


>gi|84388092|ref|ZP_00990988.1| polar flagellar FlgF [Vibrio splendidus 12B01]
 gi|84377159|gb|EAP94029.1| polar flagellar FlgF [Vibrio splendidus 12B01]
          Length = 249

 Score = 43.1 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGMPTRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        + ++ +    +             L+       
Sbjct: 60  ERPGHNFAQGSVVTTGRDLDVTIQGDGWISVMDNTGREGL------TRNGNLKVDQNGLL 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 TNASG 118



 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            + +       VN   E++ LI +++ + +  K++   ++M
Sbjct: 198 TLLKGAIEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|83955137|ref|ZP_00963793.1| Flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1]
 gi|83840466|gb|EAP79639.1| Flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1]
          Length = 259

 Score = 43.1 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/212 (6%), Positives = 44/212 (20%), Gaps = 13/212 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +  +   A +     ++   +   N+ NA    Y     +    P+           +  
Sbjct: 17  MTNISYVALSQATVLTRNMDTTAHNLANATTSGYKAIHPVLESIPDGSGDNAINYVRESG 76

Query: 61  ---NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
               + D  L    + +        + +                    +L   ++   K 
Sbjct: 77  TYLELTDGPLMQTGNPMDIAVAGDGWLS-----FQLPGGETG-YSRHGRLVVDVDGQLKT 130

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI--ELEISNLRRFLSELTVVND 175
                L               +           +    +   + +  +      L +   
Sbjct: 131 AGGMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPMGAG 190

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
             +    +         Q      + S +  +
Sbjct: 191 MYQLPPNAGQPQQMENPQVKQGFIEGSNVNAV 222



 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 76/262 (29%), Gaps = 8/262 (3%)

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
               +  D +   E    +I++  ++  TV + +       +  ++  G       ++++
Sbjct: 1   MYNAFFRDASAPPEDEMTNISYVALSQATVLTRNMDTTAHNLANATTSGYKAIHPVLESI 60

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                     +  +       L      +     +       +++  +   +    +   
Sbjct: 61  PDGSGDNAINYVRE-SGTYLELTDGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGR 119

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
             + V+ Q ++       G       L +               +          V  IN
Sbjct: 120 LVVDVDGQLKTAGGMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAIN 179

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
               +L                  +     Q+    + + +     VN   E++ LI ++
Sbjct: 180 EAAQMLPMGAGMY-------QLPPNAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQ 232

Query: 456 QSYNISNKLIMFTDKMLQTLLE 477
           ++Y  S KL+   D + +T ++
Sbjct: 233 RAYENSVKLMGSDDDLTRTAIQ 254


>gi|241766921|ref|ZP_04764727.1| flagellar basal-body rod protein FlgF [Acidovorax delafieldii 2AN]
 gi|241362625|gb|EER58473.1| flagellar basal-body rod protein FlgF [Acidovorax delafieldii 2AN]
          Length = 246

 Score = 43.1 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 28/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +    N A+Q+ A +  N+ NA  + +    +     P        R      
Sbjct: 1   MDRIIYTSMTGANAAAQRQAVLANNLANASTQGFRAEMSTFRSVPLQGDGSKTRVFALEA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L          R L +                           S        +   
Sbjct: 61  TSGHLQTPGPVQRTGRALDAMAMGNAWFGVQGLDGLEAYTRAGGFEVSSAGTLLTSTGLT 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +        +       +   
Sbjct: 121 VLSDAGAPIDVPPGAEVSLGA 141


>gi|224532015|ref|ZP_03672647.1| flagellar basal-body rod protein FlgB [Borrelia valaisiana VS116]
 gi|224511480|gb|EEF81886.1| flagellar basal-body rod protein FlgB [Borrelia valaisiana VS116]
          Length = 135

 Score = 43.1 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N +  N+ R       
Sbjct: 23 SVISDNIANVNTPNFKRSKISFES 46


>gi|42780864|ref|NP_978111.1| flagellar basal body rod protein FlgG [Bacillus cereus ATCC 10987]
 gi|42736784|gb|AAS40719.1| flagellar basal-body rod protein, putative [Bacillus cereus ATCC
           10987]
          Length = 257

 Score = 43.1 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 50/230 (21%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L                + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGANGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 INSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NNRLVQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/236 (7%), Positives = 61/236 (25%), Gaps = 8/236 (3%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               +   T+      +   V           G +  +  +  +VVP   +       + 
Sbjct: 22  SNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNIQ 81

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + + +    +   +      F+     +         +       Q  S    + +    
Sbjct: 82  MTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTINSDRYLQTSSGAFVMGENNER 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            +        +     L +    +         V     N  +    ++           
Sbjct: 142 IRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDAEANNRLVQRENKSF-----TLAEG 196

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +         +   +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 197 NIADLPNGTGL---VKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|146277707|ref|YP_001167866.1| hypothetical protein Rsph17025_1668 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555948|gb|ABP70561.1| protein of unknown function DUF1078 domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 251

 Score = 43.1 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           I +       VN  EEL   I++++++ ++ ++I    ++
Sbjct: 200 ILQGVLEGSNVNTMEELVSSIELQRTFELNLRMISAAKEL 239


>gi|326939385|gb|AEA15281.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 257

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 52/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D + T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGVVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEITQNNIARLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 194 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 249


>gi|283956106|ref|ZP_06373593.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792426|gb|EFC31208.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 270

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|158320509|ref|YP_001513016.1| flagellar basal-body rod protein FlgB [Alkaliphilus oremlandii
          OhILAs]
 gi|158140708|gb|ABW19020.1| flagellar basal-body rod protein FlgB [Alkaliphilus oremlandii
          OhILAs]
          Length = 131

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +    N      + + ++   I  NI NA+  N+ R D +    
Sbjct: 1  MYNNINILTKALDASWRRNEVITNNIANAETPNFKRSDVIFEDV 44


>gi|283953937|ref|ZP_06371466.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794542|gb|EFC33282.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 270

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|239817167|ref|YP_002946077.1| flagellar basal-body rod protein FlgC [Variovorax paradoxus S110]
 gi|239803744|gb|ACS20811.1| flagellar basal-body rod protein FlgC [Variovorax paradoxus S110]
          Length = 138

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            Y     VN+ EE++ +I   +SY  + +++     ++   L  
Sbjct: 93  GYVAMPNVNVVEEMTNMISASRSYQANVEVLNTAKTLMVKTLSI 136


>gi|196247642|ref|ZP_03146344.1| flagellar basal-body rod protein FlgB [Geobacillus sp. G11MC16]
 gi|196212426|gb|EDY07183.1| flagellar basal-body rod protein FlgB [Geobacillus sp. G11MC16]
          Length = 129

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 1  MSLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          MSL +   +  +     AS +  +I  NI N D   Y  +D     
Sbjct: 1  MSLFSSTIHWIEQGLRYASLRQQAIADNIANVDTPGYKAKDVRFQA 46


>gi|86153224|ref|ZP_01071428.1| flagellar hook-associated protein FlgL, putative [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842950|gb|EAQ60161.1| flagellar hook-associated protein FlgL, putative [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 750

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/354 (8%), Positives = 107/354 (30%), Gaps = 3/354 (0%)

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
           + D         +      +K        +   I     + ++ T +++ +   + +   
Sbjct: 399 MTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTT 458

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
            +  ++ +      ++  +  ST+   + +    T     +        +     S  +T
Sbjct: 459 LNLKVNSKGGNSYDVTINLQTSTVSYLDPNNPGQTISFPIMHTNPATGNSGVVTGSNDIT 518

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
                  I          + +     +        +  + ++    +   +         
Sbjct: 519 YGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVDVSMDYKGRISVT 578

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
              +S     + ++D             + T+   P +  + +        +   + ++ 
Sbjct: 579 DKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLD 638

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKS 425
           ++       N   DS ++N     + G    +  L ++       +    +    ++ ++
Sbjct: 639 SMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVNKLNTTMGAYHNTIEGVNTRT 698

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
             +  ++    SN + V+  E +  L++V+ +Y  S K      ++  +LL  +
Sbjct: 699 SFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|163803170|ref|ZP_02197053.1| putative flagellar basal-body rod protein [Vibrio sp. AND4]
 gi|159173070|gb|EDP57903.1| putative flagellar basal-body rod protein [Vibrio sp. AND4]
          Length = 243

 Score = 43.1 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 64/249 (25%), Gaps = 22/249 (8%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      VR   +     +  T+
Sbjct: 1   MDSLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERVRSVELQGSGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S         +      +    + + + +++          N        ++    
Sbjct: 57  VVTNSAATRFDSGDIMKTGRPLDVAIMGEGYLSVE------TPTGNEAYTRAGNIKVDTF 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                    +LG+       +  +   +    V  I      E+E  +  L+        
Sbjct: 111 GAMSINGFPVLGENGPLVVPDFQKIEISERGRVSVIPPGGGAEVE--VGTLKMVKPPFDQ 168

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +         S   A    D+   L  +  E   +S I    + M +  +    +     
Sbjct: 169 LQKESDSLLHSLDGAPFPADETVQLSPEHIEGSNVSAIDELLSVMSLTRNFEMQVRMMKT 228

Query: 233 RDINFEKMN 241
            +   +  N
Sbjct: 229 AETLAQAGN 237


>gi|325509555|gb|ADZ21191.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum
           EA 2018]
          Length = 258

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/152 (6%), Positives = 33/152 (21%), Gaps = 25/152 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A +       +   I  N+ N +   +      +                   
Sbjct: 1   MVRGLYTAISGMVVQEAKQDVITNNLANTNTVGFKSDSLSSQSFEDVLIQNYSKRENGVP 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                              +     + A           + F  ++     ++  + +  
Sbjct: 61  ERTLLGTLNLGSRINDTATDFTGGNIQATDIDTDFAIQGRGFFTVR----KNNGSDQNYY 116

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                   +++ Y  + S D +  T +     
Sbjct: 117 TRNGHFHVNMDGYMLDDSGDYIMGTNLATNTT 148


>gi|326792666|ref|YP_004310487.1| flagellar basal-body rod protein FlgF [Clostridium lentocellum DSM
           5427]
 gi|326543430|gb|ADZ85289.1| flagellar basal-body rod protein FlgF [Clostridium lentocellum DSM
           5427]
          Length = 255

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 6/144 (4%), Positives = 23/144 (15%), Gaps = 28/144 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           ++     A    N  +++   I  ++ N     Y +   + +                  
Sbjct: 1   MVRGLYTAATGMNVQAKRLEIISNDLANTTTTGYKKDVAVVSSFQEVLMTRLNDTQNQVP 60

Query: 46  ----SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                              +     + +    +             +        N    
Sbjct: 61  NNGPIGNITYGAKIDEVYTDFTQGSVISTGEMVDVAI-------QGDGFFVVQTPNGEAY 113

Query: 102 HYISKLRDSLESYSKNLSEDILGK 125
                   +            +  
Sbjct: 114 TRDGNFSINQYGDLVTKEGYPVMG 137



 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 14/251 (5%)

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM-A 294
            +       V ++   I  + +  ++  G       + +  ++  + +   QNQ+     
Sbjct: 5   LYTAATGMNVQAKRLEIISNDLANTTTTGYKKDVAVVSSFQEVLMTRLNDTQNQVPNNGP 64

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
              I   ++ D +  +      +   + +          + +T       R     +   
Sbjct: 65  IGNITYGAKIDEVYTDFTQGSVISTGEMVDVAIQGDGFFVVQTPNGEAYTRDGNFSINQY 124

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
           G +  K  + V  L G   L   +          D V      VTL     +++      
Sbjct: 125 GDLVTKEGYPVMGLDGPITLGEEFL-----TTGGDVVISSQGEVTLDGQYIDTLELARFE 179

Query: 415 RSDSHDLHMKSQVVF--------NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
            S +      +              + + Y  +  VN    +  +I V ++Y  + K+I 
Sbjct: 180 DSRALTKMDNNLYSSTAARLPFEGKLIQGYLESANVNPVTAMVDMITVSRAYETNQKMIQ 239

Query: 467 FTDKMLQTLLE 477
             D +L   + 
Sbjct: 240 VQDSLLGKAVN 250


>gi|153834440|ref|ZP_01987107.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01]
 gi|156973588|ref|YP_001444495.1| flagellar basal body rod protein FlgF [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961600|ref|ZP_06175962.1| flagellar basal-body rod protein FlgF [Vibrio harveyi 1DA3]
 gi|148869136|gb|EDL68168.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01]
 gi|156525182|gb|ABU70268.1| hypothetical protein VIBHAR_01291 [Vibrio harveyi ATCC BAA-1116]
 gi|269833641|gb|EEZ87738.1| flagellar basal-body rod protein FlgF [Vibrio harveyi 1DA3]
          Length = 249

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 24/129 (18%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +        + ++ +    +             L+        
Sbjct: 61  RPGHNFAQGSVITTGRDLDITVEGSGWISVMDQTGKEGL------TRNGNLKVDQNGLLT 114

Query: 117 NLSEDILGK 125
           N S  ++  
Sbjct: 115 NASGHVVLG 123



 Score = 40.0 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I         VN   E++ LI +++ + +  K++   ++M
Sbjct: 198 SIQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEM 238


>gi|269138580|ref|YP_003295280.1| flagellar basal body rod protein [Edwardsiella tarda EIB202]
 gi|267984240|gb|ACY84069.1| flagellar basal body rod protein [Edwardsiella tarda EIB202]
 gi|304558590|gb|ADM41254.1| Flagellar basal-body rod protein FlgC [Edwardsiella tarda FL6-60]
          Length = 134

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL++F+ + +     S++      N+ NA          Y  +  +  + P     + 
Sbjct: 1  MSLLSIFDISGSALTAQSKRMNVAASNLANADSVTGPDGEPYRAKQVVFQVKPGAGEEIG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVQVSQVVDD 70


>gi|319403955|emb|CBI77543.1| Flagellar basal-body rod protein flgF [Bartonella rochalimae ATCC
           BAA-1498]
 gi|319406971|emb|CBI80608.1| Flagellar basal-body rod protein flgF [Bartonella sp. 1-1C]
          Length = 244

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/206 (6%), Positives = 48/206 (23%), Gaps = 1/206 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-TVVTQRSENKN 61
           +        +      ++  +I +N+ N +   +            +V      R    +
Sbjct: 1   MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFQAGGMKFDTLLSSVAHEQGDRVFFTS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +     ++ +         + +   +             ++  + E    +++  
Sbjct: 61  AGKGYISTDRGSLVETGNALDIAVVGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTGL 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                     +               I  D     ++ +   +         N ++    
Sbjct: 121 PFLDEGGAPIQLNPAGGTPRIVADGSIYQDNAFVGKIGLFQFQPGTQLRYGPNSSVIPDK 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGI 207
           A+        D       + S + G+
Sbjct: 181 AAFQSEGGSGDTVVQGYIESSNVNGV 206


>gi|183220164|ref|YP_001838160.1| flagellar basal body rod protein FlgB [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189910284|ref|YP_001961839.1| flagellar basal body rod protein FlgB [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167774960|gb|ABZ93261.1| Endoflagellar proximal basal body rod protein [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778586|gb|ABZ96884.1| Flagellar basal-body rod protein FlgB [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 143

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
               A+Q+   I  NI NAD  N+ R + +    
Sbjct: 16 RGLGAATQRRKVITDNIANADVPNFKRSEVVFESM 50


>gi|120554031|ref|YP_958382.1| flagellar basal body rod protein FlgC [Marinobacter aquaeolei
          VT8]
 gi|120323880|gb|ABM18195.1| flagellar basal-body rod protein FlgC [Marinobacter aquaeolei
          VT8]
          Length = 149

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MSL  +F+ A +     S +  +   NI NA+ 
Sbjct: 1  MSLGNIFDIAGSGMTAQSLRLNTTASNIANAET 33



 Score = 36.5 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ ++   +S+ ++  ++     M+Q +L
Sbjct: 109 NVNVVEEMADMMSSSRSFQMNVDVMNTAKSMMQRIL 144


>gi|88596898|ref|ZP_01100134.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562336|ref|YP_002344115.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|88190587|gb|EAQ94560.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360042|emb|CAL34834.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284925953|gb|ADC28305.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315926811|gb|EFV06185.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 270

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|304404241|ref|ZP_07385903.1| flagellar basal-body rod protein FlgB [Paenibacillus
          curdlanolyticus YK9]
 gi|304347219|gb|EFM13051.1| flagellar basal-body rod protein FlgB [Paenibacillus
          curdlanolyticus YK9]
          Length = 136

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              +A  +   I  NI N D  N+ R + +    
Sbjct: 14 TAIQSAETRQKVISDNIANVDTPNFKRSEVLFEDL 48


>gi|118589983|ref|ZP_01547387.1| flagellar basal-body rod protein C [Stappia aggregata IAM 12614]
 gi|118437480|gb|EAV44117.1| flagellar basal-body rod protein C [Stappia aggregata IAM 12614]
          Length = 138

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          MS  L A    +       S++   +  N+ NA +         Y R+      
Sbjct: 1  MSDPLSATLQISGAGLRAQSERLRVVSENLANARSTGEAAGDDPYRRKTITFES 54



 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 20/67 (29%)

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
            N +         +                 Y     VN   EL+ + +  +SY  + K+
Sbjct: 62  ANLVSVKGIGEDKAEFAVEYDPGHPAADENGYVKMPNVNTLLELADMRETNRSYEANLKV 121

Query: 465 IMFTDKM 471
           +    +M
Sbjct: 122 MTQAREM 128


>gi|28869138|ref|NP_791757.1| flagellar basal-body rod protein FlgC [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|66046709|ref|YP_236550.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          syringae B728a]
 gi|71737330|ref|YP_275565.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|213967584|ref|ZP_03395732.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tomato T1]
 gi|237799204|ref|ZP_04587665.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|237806223|ref|ZP_04592927.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|257484951|ref|ZP_05638992.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|289627761|ref|ZP_06460715.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289651649|ref|ZP_06482992.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|298487859|ref|ZP_07005899.1| Flagellar basal-body rod protein flgC [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|301385711|ref|ZP_07234129.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tomato Max13]
 gi|302060077|ref|ZP_07251618.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tomato K40]
 gi|302134836|ref|ZP_07260826.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|302185585|ref|ZP_07262258.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          syringae 642]
 gi|28852378|gb|AAO55452.1| flagellar basal-body rod protein FlgC [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|63257416|gb|AAY38512.1| Flagellar basal-body rod protein FlgC [Pseudomonas syringae pv.
          syringae B728a]
 gi|71557883|gb|AAZ37094.1| flagellar basal-body rod protein FlgC [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|213927885|gb|EEB61432.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tomato T1]
 gi|298157584|gb|EFH98664.1| Flagellar basal-body rod protein flgC [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320325091|gb|EFW81160.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320329350|gb|EFW85343.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330866420|gb|EGH01129.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330875981|gb|EGH10130.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330880520|gb|EGH14669.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330889087|gb|EGH21748.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          mori str. 301020]
 gi|330899399|gb|EGH30818.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330943205|gb|EGH45612.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          pisi str. 1704B]
 gi|330953719|gb|EGH53979.1| flagellar basal body rod protein FlgC [Pseudomonas syringae Cit
          7]
 gi|330961194|gb|EGH61454.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          maculicola str. ES4326]
 gi|330967088|gb|EGH67348.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|330972411|gb|EGH72477.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          aceris str. M302273PT]
 gi|330975974|gb|EGH76040.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          aptata str. DSM 50252]
 gi|330986466|gb|EGH84569.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331011040|gb|EGH91096.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331017028|gb|EGH97084.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
 gi|331022059|gb|EGI02116.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331027336|gb|EGI07391.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 146

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 6/78 (7%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL  VFN A +  +  + +  +   NI NA+  +      Y  R  +     +      
Sbjct: 1  MSLANVFNIAGSAMSAQTTRLNTTASNIANAETVSSSMDQTYRARHPVFATVMQGQQSTG 60

Query: 55 QRSENKNMFDKVLHAHSS 72
                          + 
Sbjct: 61 GSLFQDQGEAGQGVQVNG 78



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 107 NVNVVEEMADMISASRSFQTNAEIMNTAKSMMQKVL 142


>gi|84502378|ref|ZP_01000514.1| putative flagellar basal-body rod protein flgF [Oceanicola
           batsensis HTCC2597]
 gi|84389190|gb|EAQ01987.1| putative flagellar basal-body rod protein flgF [Oceanicola
           batsensis HTCC2597]
          Length = 250

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 24/52 (46%)

Query: 420 DLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                +    + I +       V+   E++ L+ ++++Y+ + KL+   D++
Sbjct: 185 REGQATAAEGSEILQGQIELSNVSPVAEVTRLMMIQKAYDRATKLMSTEDEL 236


>gi|117926380|ref|YP_866997.1| flagellar basal body rod protein [Magnetococcus sp. MC-1]
 gi|117610136|gb|ABK45591.1| flagellar basal body rod protein [Magnetococcus sp. MC-1]
          Length = 269

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          + +    A N       + +++  N+ N +   Y         
Sbjct: 1  MDSGVYAAVNGARRTELRLSTLANNLANVNTTGYKEDRLTFES 43



 Score = 36.5 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/172 (7%), Positives = 49/172 (28%), Gaps = 1/172 (0%)

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            + +        + +          +          R     + + G +  K  + V   
Sbjct: 93  VDVQQGALHGTNNPLHVAIEGEGFFVLNGPDGRRYTRDGSFEVNNVGELVSKDGYQVLGP 152

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM-KSQV 427
            G P ++     +   +            +  ++     +  + +N+  +          
Sbjct: 153 GGEPIVVGDGPVNIAPDGFVTSNGEEVGTIARVKLPSEQLDKVGQNQYKAPQDLEVPVDA 212

Query: 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
               + + +      N    ++ +I+ +++Y +  K+I   D +    +  +
Sbjct: 213 AQAQVHQGFLEGSNSNPIRAMTQMIEAQRAYEMHIKMIQNLDNLDDQAVNRI 264


>gi|325291941|ref|YP_004277805.1| flagellar basal body rod protein FlgC [Agrobacterium sp. H13-3]
 gi|325059794|gb|ADY63485.1| flagellar basal body rod protein FlgC [Agrobacterium sp. H13-3]
          Length = 139

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 10/63 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI---SPENVTV 52
          L A    A +     S +   +  NI NA    D      Y R+             V  
Sbjct: 4  LSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDRVSGVQR 63

Query: 53 VTQ 55
          VT 
Sbjct: 64 VTV 66


>gi|253573515|ref|ZP_04850858.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. oral
          taxon 786 str. D14]
 gi|251847043|gb|EES75048.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. oral
          taxon 786 str. D14]
          Length = 135

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 10/35 (28%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
               A+ +   I  NI N D   + R        
Sbjct: 14 TAIQAANLRQGVIANNIANVDTPYFKRSSVSFESM 48


>gi|227820856|ref|YP_002824826.1| flagellar basal body rod protein FlgC [Sinorhizobium fredii NGR234]
 gi|227339855|gb|ACP24073.1| flagellar basal-body rod protein FlgC [Sinorhizobium fredii NGR234]
          Length = 139

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 31/122 (25%), Gaps = 15/122 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
           L +    + +     S +   +  NI NA +         Y R+                
Sbjct: 4   LTSALKVSASGLQAESTRLRIVSENIANARSTGDVPGADPYRRKTISFAA--------EV 55

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              +     +V    +                +        N +    ++ +R++  +Y 
Sbjct: 56  DRASGASLVEVQRLGTDDSDFSIEFDPGNPAADEKGMVKMPNVNVLIEMADMREANRAYE 115

Query: 116 KN 117
            N
Sbjct: 116 AN 117


>gi|331269311|ref|YP_004395803.1| flagellar basal-body rod protein FlgB [Clostridium botulinum
          BKT015925]
 gi|329125861|gb|AEB75806.1| flagellar basal-body rod protein FlgB [Clostridium botulinum
          BKT015925]
          Length = 134

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +   N  +++   I  NI N + K Y R       S
Sbjct: 17 KQSLNATAKRKNVINNNISNFNTKGYKRSYVTFEDS 52


>gi|304404242|ref|ZP_07385904.1| flagellar basal-body rod protein FlgC [Paenibacillus
          curdlanolyticus YK9]
 gi|304347220|gb|EFM13052.1| flagellar basal-body rod protein FlgC [Paenibacillus
          curdlanolyticus YK9]
          Length = 149

 Score = 43.1 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK--NYV 37
          M L   F+   +       +   I  NI NA+     YV
Sbjct: 1  MRLSNGFDANASALTAQRLRMDVISSNIANAETTRAGYV 39


>gi|308061706|gb|ADO03594.1| flagellar basal-body rod protein [Helicobacter pylori Cuz20]
          Length = 269

 Score = 43.1 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTDGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|196249722|ref|ZP_03148418.1| flagellar basal body rod protein [Geobacillus sp. G11MC16]
 gi|196210598|gb|EDY05361.1| flagellar basal body rod protein [Geobacillus sp. G11MC16]
          Length = 295

 Score = 43.1 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 47/194 (24%), Gaps = 13/194 (6%)

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
              +         L+      DP  G    +         +    +              
Sbjct: 109 GDIKETGLSTDVALVDGQVPVDPTTGERGTLFFAVENGQGETRYTRNGHFTLSPDGYLTT 168

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                    +G  ++           G     N         F  +P   +     L   
Sbjct: 169 QDGWNVLDGNGERIAIPSESFTVRDDGTITAENRTIARLGVVFAANPKTVVKEGNGL--- 225

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                      RS    L      V   + + +     V++++ ++ L+   +++  + K
Sbjct: 226 ----------FRSTEGPLPQAPGNVTYMVKQGFIERSNVDIEQTMTDLLAAYRAFEANQK 275

Query: 464 LIMFTDKMLQTLLE 477
           +I   D+ L   + 
Sbjct: 276 IIQAYDRSLDKAVN 289



 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A +      ++   +  N+ NA+   Y 
Sbjct: 20 MLRGLYTAASGMLAQQRRGDWLTNNLANAETPGYK 54


>gi|163738061|ref|ZP_02145477.1| hypothetical protein RGBS107_06604 [Phaeobacter gallaeciensis
           BS107]
 gi|161388677|gb|EDQ13030.1| hypothetical protein RGBS107_06604 [Phaeobacter gallaeciensis
           BS107]
          Length = 238

 Score = 43.1 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/110 (7%), Positives = 24/110 (21%), Gaps = 4/110 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   +  NI N+    Y     + +   ++       S       +     
Sbjct: 12  QSGLM---REMRVVANNIANSATTGYRAEGVIFSEFIQSAPGQESLSMG-RANIRNTSMA 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
             A+ Q           +     +               + +     +  
Sbjct: 68  QGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDG 117


>gi|120598233|ref|YP_962807.1| flagellar basal body rod protein FlgF [Shewanella sp. W3-18-1]
 gi|120558326|gb|ABM24253.1| flagellar basal-body rod protein FlgF [Shewanella sp. W3-18-1]
          Length = 247

 Score = 43.1 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 24/127 (18%), Gaps = 12/127 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R                  + + 
Sbjct: 5   LYISMSGAKQNMNELALRGNNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMIETPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++                   L         N   
Sbjct: 65  NFRSGPIKTTGRDLDVAIKGDGWFAVQ------AKDGAEAYTRSGSLSFDATGLLHNDRG 118

Query: 121 DILGKTV 127
           + +    
Sbjct: 119 NPVMGDA 125



 Score = 40.0 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         VN  +E+  LI++++ + +  K++   +++
Sbjct: 196 AVESGAVEGSNVNPVDEMVSLIELQRQFEMQVKMMKTAEEI 236


>gi|57241926|ref|ZP_00369866.1| flagellin B homolog (fla), putative [Campylobacter upsaliensis
           RM3195]
 gi|57017118|gb|EAL53899.1| flagellin B homolog (fla), putative [Campylobacter upsaliensis
           RM3195]
          Length = 751

 Score = 43.1 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/349 (9%), Positives = 91/349 (26%), Gaps = 4/349 (1%)

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
                  +      +K        +   I     + ++ T +++ +              
Sbjct: 406 GGATNGADYDNTFFEKHGNSVIGNVSQVIQGTNAYATDDTKLSEVMSGNAMDSILNLTVN 465

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESN 250
            +          +   +    +  +     +   T        +      N  T    ++
Sbjct: 466 SKGGNTYNVTVNLQNSTVSFPDPANPGQTITFPITHTNPTTGNNGVVTPPNEITYRQIND 525

Query: 251 PIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
            I +        Q      G+I          +         +     G  S  D ++  
Sbjct: 526 IIGMFASDQVPTQTITPNNGQITNAQYDTLQKLMSDSKSTVNVTMDYRGRISVTDKLSTG 585

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
           +     L  +              S+    +  + +N S + D  +V      ++   A 
Sbjct: 586 TNIGVSLSDSQSGHFPQPPYNHTASQVAGPDFSFNANNSLVIDEPNVDVIKDLDLMIEAV 645

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
               +    D  N        A    +  L ++       +    ++  +++ +   +  
Sbjct: 646 LSGNMRANADGDNPRNTGMQGALERLDH-LSDHINKLNTTMGAYHNNIDNVNTRVTFLGV 704

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++    +     +  E L  L++ + +Y  S K      ++  +LL  +
Sbjct: 705 NVQTLKTKVNDADYAETLMNLMQTQLAYQASMKATTTISQL--SLLNYM 751


>gi|261253613|ref|ZP_05946186.1| flagellar basal-body rod protein FlgF [Vibrio orientalis CIP
           102891]
 gi|260937004|gb|EEX92993.1| flagellar basal-body rod protein FlgF [Vibrio orientalis CIP
           102891]
          Length = 249

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/202 (7%), Positives = 41/202 (20%), Gaps = 15/202 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV---RRDTMTTISPENV---TVVTQR 56
           +      A +      Q       N+ N     +     +        E V         
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGEGVPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +        + ++ +    +             L   +     
Sbjct: 61  RPGHNFQQGSVITTGRDLDVTIQGDGWISVLDQTGKEGL------TRNGNLNVDVNGLLT 114

Query: 117 NLSE---DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           N +           I     V +    +   +  +   A  +    +  ++   +    +
Sbjct: 115 NGNGHLVLGETGAPITLPIPVSKVEIGNDGTISVVPQGAPADAIEVVDRIKLTRTNNQSL 174

Query: 174 NDAIKFKTASKHDAHDFLDQRD 195
              I     +K     +    D
Sbjct: 175 FKDINGLFRAKDPNTAYEADAD 196


>gi|319649569|ref|ZP_08003725.1| flagellar basal-body rod protein C [Bacillus sp. 2_A_57_CT2]
 gi|317398731|gb|EFV79413.1| flagellar basal-body rod protein C [Bacillus sp. 2_A_57_CT2]
          Length = 150

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTT 44
          MS+    N   +       +   I  N+ NAD+         Y R+  +  
Sbjct: 1  MSMFHSMNNTASALTAQRLRMDVISSNMANADSTRSVNGDGPYRRKSVVLE 51


>gi|299534789|ref|ZP_07048119.1| flagellar basal body rod protein FlgC [Lysinibacillus fusiformis
          ZC1]
 gi|298729877|gb|EFI70422.1| flagellar basal body rod protein FlgC [Lysinibacillus fusiformis
          ZC1]
          Length = 153

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 10/55 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTI 45
          MS+    N   +       +   I  N+ N D             Y R+    + 
Sbjct: 1  MSIFHGMNTTASALTAQRLRMDVISSNMANMDTTRARQVNGEWEPYRRKSVTLSA 55


>gi|296331270|ref|ZP_06873742.1| flagellar basal-body rod protein [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305676257|ref|YP_003867929.1| putative flagellar basal-body rod protein [Bacillus subtilis
          subsp. spizizenii str. W23]
 gi|296151385|gb|EFG92262.1| flagellar basal-body rod protein [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305414501|gb|ADM39620.1| putative flagellar basal-body rod protein [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A +      ++   +  NI NA+   Y 
Sbjct: 1  MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYK 35


>gi|331006032|ref|ZP_08329374.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium
          IMCC1989]
 gi|330420161|gb|EGG94485.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium
          IMCC1989]
          Length = 140

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL +VF+ A +  N  S +  +   N+ NAD
Sbjct: 1  MSLDSVFSIAGSGMNAQSLRLNTTASNLANAD 32



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 2/133 (1%)

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
            +   +   G  ++    N                           A +   +++     
Sbjct: 4   DSVFSIAGSGMNAQSLRLNTTASNLANADAAASSIDETYRGRHPVFASLKDTLSMDSNGN 63

Query: 406 NSIGW--LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
            S+G   L    SD+               E Y     VN+ EE++ +I   +S+ I+ +
Sbjct: 64  ASVGVGVLGIVESDAPLQPRYEPGHPLSNEEGYVFYPNVNVVEEMTNMISASRSFQINVE 123

Query: 464 LIMFTDKMLQTLL 476
           ++    +M+Q  L
Sbjct: 124 VMNSAKQMMQRAL 136


>gi|157694040|ref|YP_001488502.1| flagellar basal-body rod protein [Bacillus pumilus SAFR-032]
 gi|157682798|gb|ABV63942.1| flagellar basal-body rod protein [Bacillus pumilus SAFR-032]
          Length = 279

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A +      ++   +  NI NA+   Y 
Sbjct: 1  MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYK 35


>gi|313672411|ref|YP_004050522.1| flagellar basal-body rod protein flgf [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939167|gb|ADR18359.1| flagellar basal-body rod protein FlgF [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 251

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38
          +L     A +      +  ++I  N+ N +   Y +
Sbjct: 1  MLNGLYVAASGMMMQERVVSNIANNLANVNTNGYKK 36



 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +I + Y     VN  EE+  +I+  + +    K+I   D++
Sbjct: 199 NIMQGYIEGSNVNAVEEMVKMIEANRGFETYQKVIQTIDQL 239


>gi|70731825|ref|YP_261567.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens
          Pf-5]
 gi|68346124|gb|AAY93730.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens
          Pf-5]
          Length = 147

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VFN A +  +  + +  ++  NI NA++ +      Y  R  +     +      
Sbjct: 1  MSLASVFNIAGSGMSAQTTRLNTVASNIANAESVSSSIDQTYRARHPVFATMFQGAQSGG 60

Query: 55 QRSENK 60
            S  +
Sbjct: 61 SDSLFQ 66



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVL 143


>gi|317406203|gb|EFV86452.1| flagellar basal-body rod protein FlgC [Achromobacter xylosoxidans
          C54]
          Length = 139

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTV 52
          MSLL++F+ A +  +  SQ+      N+ NA          Y  R  +  ++P     
Sbjct: 1  MSLLSIFDIAGSALSAQSQRMNVAASNMANADSVVGPDGQPYRARQVVFQVNPPAGQA 58



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + Y +   V+   E   +I   +SY  + +++     ++Q  L
Sbjct: 92  QGYVSMPNVDPVAETVNMIAASRSYQANVEVLNTAKSLMQKTL 134


>gi|295097205|emb|CBK86295.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 134

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL +VF+ + +     S++      N+ NAD+        Y  R  M          + 
Sbjct: 1  MSLFSVFDISGSAMAAQSKRLNVSASNMANADSVAGPDGQPYRARQVMFEADTSAGQGIG 60

Query: 55 QRSENK 60
              + 
Sbjct: 61 GVRVSD 66


>gi|261419416|ref|YP_003253098.1| flagellar basal body rod protein FlgB [Geobacillus sp. Y412MC61]
 gi|319766231|ref|YP_004131732.1| flagellar basal-body rod protein FlgB [Geobacillus sp. Y412MC52]
 gi|261375873|gb|ACX78616.1| flagellar basal-body rod protein FlgB [Geobacillus sp. Y412MC61]
 gi|317111097|gb|ADU93589.1| flagellar basal-body rod protein FlgB [Geobacillus sp. Y412MC52]
          Length = 129

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 1  MSLLAVFNKA--QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M+L +       +     A+ +  +I  NI NAD   Y  +D     
Sbjct: 1  MALFSA-TIGWLEQGLRYAALRQQAIADNIANADTPGYKAKDVRFQS 46


>gi|182412250|ref|YP_001817316.1| flagellar basal-body rod protein FlgC [Opitutus terrae PB90-1]
 gi|177839464|gb|ACB73716.1| flagellar basal-body rod protein FlgC [Opitutus terrae PB90-1]
          Length = 139

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M+L++  +      N    +   + +NI NA          Y R+      
Sbjct: 1  MNLISGIDITAGALNAQKTRLDMVAQNIANAQTTRTPNGGPYQRQVVSFET 51


>gi|167630287|ref|YP_001680786.1| flagellar basal-body rod protein flgc, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167593027|gb|ABZ84775.1| flagellar basal-body rod protein flgc, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 159

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M  L+  + + +       +   I  N+ N +  
Sbjct: 1  MRFLSSIDTSASGLTAQRFRMDIISNNLANVNTT 34


>gi|86151576|ref|ZP_01069790.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|157414984|ref|YP_001482240.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|85841205|gb|EAQ58453.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|157385948|gb|ABV52263.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747621|gb|ADN90891.1| Flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931896|gb|EFV10851.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|90021858|ref|YP_527685.1| GTP-binding protein LepA [Saccharophagus degradans 2-40]
 gi|89951458|gb|ABD81473.1| flagellar basal-body rod protein FlgB [Saccharophagus degradans
          2-40]
          Length = 134

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55
          M++         ++  +  S++   +  N+ N +   Y  RD     + ++      
Sbjct: 1  MAISFDKALGIYESALSLRSERAGVLANNLANVNTPGYKARDIDFQQALKDSMGQGI 57


>gi|187478183|ref|YP_786207.1| flagellar basal body rod protein FlgC [Bordetella avium 197N]
 gi|115422769|emb|CAJ49297.1| flagellar basal-body rod protein [Bordetella avium 197N]
          Length = 139

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL++F  + +     SQ+      N+ NAD+        Y  R  +  ++P       
Sbjct: 1  MSLLSIFEISGSALAAQSQRLNVAASNLANADSVAGPDGQPYRARQVVFQMNPALGQAAG 60

Query: 55 QR 56
          Q 
Sbjct: 61 QE 62



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           + Y     V+   E   +I   +SY  + +++    +++Q  L
Sbjct: 92  QGYVAMPNVDPVAETVNMIAASRSYQANIEVLNTAKQLMQRTL 134


>gi|294635608|ref|ZP_06714085.1| flagellar basal-body rod protein FlgC [Edwardsiella tarda ATCC
          23685]
 gi|291091060|gb|EFE23621.1| flagellar basal-body rod protein FlgC [Edwardsiella tarda ATCC
          23685]
          Length = 134

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL++F+ + +     S++      N+ NA          Y  +  +  + P     + 
Sbjct: 1  MSLLSIFDISGSALTAQSKRMNVAASNLANADSVTGPDGEPYRAKQVVFQVKPGAGEEIG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVQVSQVVDD 70


>gi|224418356|ref|ZP_03656362.1| hypothetical protein HcanM9_03665 [Helicobacter canadensis MIT
          98-5491]
          Length = 36

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 3/34 (8%), Positives = 8/34 (23%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNY 36
          ++       +              NI N +   +
Sbjct: 1  MVGSLYSGISGIKTHQTGIDVTSNNIANVNTTGF 34


>gi|118477204|ref|YP_894355.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis str.
           Al Hakam]
 gi|225863630|ref|YP_002749008.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB102]
 gi|229183964|ref|ZP_04311179.1| Flagellar basal-body rod protein flgG [Bacillus cereus BGSC 6E1]
 gi|118416429|gb|ABK84848.1| flagellar basal-body rod protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225789416|gb|ACO29633.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB102]
 gi|228599489|gb|EEK57094.1| Flagellar basal-body rod protein flgG [Bacillus cereus BGSC 6E1]
          Length = 257

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 52/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDAYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    +           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGASGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVDAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              ++    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NARLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|92116946|ref|YP_576675.1| flagellar basal body rod protein FlgC [Nitrobacter hamburgensis
          X14]
 gi|91799840|gb|ABE62215.1| flagellar basal-body rod protein FlgC [Nitrobacter hamburgensis
          X14]
          Length = 141

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
            + A +     + +   I  NI NAD+         Y R+    + +
Sbjct: 11 SMSIATSGLRAQAGRMRVISENIANADSTAQVPGGDPYRRKVPTFSSA 58



 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E++ +   ++SY  +  +I  T +M+Q  L+ +K
Sbjct: 101 NVNSLVEMTDMRDAQRSYEANLNIISATRRMIQRTLDILK 140


>gi|15644291|ref|NP_229343.1| flagellar basal-body rod protein FlgF [Thermotoga maritima MSB8]
 gi|170288995|ref|YP_001739233.1| hypothetical protein TRQ2_1206 [Thermotoga sp. RQ2]
 gi|281412685|ref|YP_003346764.1| flagellar basal-body rod protein FlgF [Thermotoga naphthophila
           RKU-10]
 gi|4982110|gb|AAD36610.1|AE001800_20 flagellar basal-body rod protein FlgF [Thermotoga maritima MSB8]
 gi|170176498|gb|ACB09550.1| protein of unknown function DUF1078 domain protein [Thermotoga sp.
           RQ2]
 gi|281373788|gb|ADA67350.1| flagellar basal-body rod protein FlgF [Thermotoga naphthophila
           RKU-10]
          Length = 249

 Score = 42.7 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 37/170 (21%), Gaps = 15/170 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR---------RDTMTTISPENVTVV 53
           +      A         +   I  ++ N D   Y +         R  +    P  V   
Sbjct: 1   MTRGIYNAAMGMLVDMAKLDRIANDLANVDTAGYKQDREAFRAYLRREVFRQEPNPVESR 60

Query: 54  TQRS-----ENKNMFDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           T++      E   + D+V        + +  +        E     +           + 
Sbjct: 61  TKKVPIGPLEYATVLDEVRTDLSQGPVEETDVPYHLAINGEGFFRIEFNGGEYYTRNGEF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
             + E Y        L     +               V+    +    I 
Sbjct: 121 TVNSEGYIVTNYGGYLLDENGERVRFFDDFTVDEEGYVRDAYGNIVTRIG 170



 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 13/136 (9%)

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             + + +F  N +             ++  +   FD    ++    + +   N +  +  
Sbjct: 113 YYTRNGEFTVNSEGYIVTNYGGYLLDENGERVRFFD-DFTVDEEGYVRDAYGNIVTRIGV 171

Query: 414 NRSDSHDLHMKSQVVFN----------HISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
              ++ +       +F            I + Y     V+  + +  +I   + Y +S +
Sbjct: 172 YNLENPE--KFGNTLFTGENPSPSENFRIMQGYVEKSNVDALKAMVDMISAMRHYELSQR 229

Query: 464 LIMFTDKMLQTLLEGV 479
            +   D++   L+  +
Sbjct: 230 AVTVNDELNGKLINSL 245


>gi|30248320|ref|NP_840390.1| flagella basal body rod protein [Nitrosomonas europaea ATCC
          19718]
 gi|30138206|emb|CAD84214.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC
          19718]
          Length = 134

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL +VFN A +     SQ+   +  N+ NAD+      + Y  R  +   
Sbjct: 1  MSLFSVFNVAGSSMAAQSQRLNVVASNLANADSATSSTGEAYRSRQVVFRT 51


>gi|325921025|ref|ZP_08182907.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas
           gardneri ATCC 19865]
 gi|325548507|gb|EGD19479.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas
           gardneri ATCC 19865]
          Length = 251

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 26/141 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q   ++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQGTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         +S      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQQVTGNPLDVSLQQDRWLSVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +                    
Sbjct: 121 VLDEGGAPMTIPPHQAMEIGS 141



 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 21/60 (35%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
                      I+        V+    L  +I++++ + +  K+I   D   Q+    ++
Sbjct: 189 AQAFQIATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQSANSMMR 248


>gi|205355539|ref|ZP_03222310.1| putative flagellar basaL body rod protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346773|gb|EDZ33405.1| putative flagellar basaL body rod protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|160899946|ref|YP_001565528.1| YD repeat-containing protein [Delftia acidovorans SPH-1]
 gi|160365530|gb|ABX37143.1| YD repeat protein [Delftia acidovorans SPH-1]
          Length = 3689

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/427 (8%), Positives = 89/427 (20%), Gaps = 26/427 (6%)

Query: 41   TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEA----------LKEMM 90
               T    NV      S N+ +  +     +SA     +                     
Sbjct: 2277 VSVTTPGGNVITTKYDSRNRPIEVRDSLGIASATTYDAVGNPLTQTDGRGRVLTHQYNDF 2336

Query: 91   SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
            +     ++      +   D   + +     +        +A   V     +  ++QK   
Sbjct: 2337 NLRTATSDGLGQVGTVEYDLHGNKTSETDANGHATNYQYDAFHRVIATTRAGIQLQKTEY 2396

Query: 151  DADKEIELEIS-NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            D    I+ E      +   E       +K   +         D    +          + 
Sbjct: 2397 DEAGRIQFETDARGNKVGYEYDKRGLLVKTNRSLGAIDLLQRDSMGDVTLATDPEGRTTA 2456

Query: 210  IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
               +     +  +DG         D+      +      +     D     +    ++  
Sbjct: 2457 TGYDKRRRAISVADGLGNTTQSTFDLAGNLTEAKAPNGATVSYAYDSANRLATITQSLDS 2516

Query: 270  GKIKALLQIRDSV---------------VPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
            G+ +A +    S                    +N+          +         ++ + 
Sbjct: 2517 GQAQATITYDTSGNLLEQRDLNGQSTRHAYDARNRRIRTTLPATQAGEAVQTNGYDNADG 2576

Query: 315  PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                         + L      T  V    + N        +       N+ + A     
Sbjct: 2577 LTEHTDANGNRFVHTLDIRGRRTQTVTTASQGNGPGSVLQTTFGYDANGNLTSTAQTDSQ 2636

Query: 375  INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                  +    F     A      +L          +    + +         +      
Sbjct: 2637 GTRTETTTYDAFNRPVKATDAWGNSLTHSYDPQGNRIGTTAATASAPGGSVTTIEYDALN 2696

Query: 435  SYSNTVG 441
              S+  G
Sbjct: 2697 RRSSQSG 2703


>gi|313124478|ref|YP_004034737.1| rnd superfamily resistance-nodulation-cell division:proton (h+)
           antiporter [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312281041|gb|ADQ61760.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 1297

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/382 (9%), Positives = 101/382 (26%), Gaps = 15/382 (3%)

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           A++ + G Q+L     +L        +   S     + L    ++ +    +       +
Sbjct: 572 ANTLSAGTQKLKSGTSSLASGSQTLANGTGSLATGANSLYTGTQTLTNGAKDLTANMNTL 631

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
                + Q  +  + E   +      ++   ++ L   L +L  V   I           
Sbjct: 632 VAG--LDQLKSELSAESGSLDTSKLDQLSEGLTKLNTGLQQLNGVVSQINVPNIDTSKIS 689

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
             +     L  ++S +    T  ++            +           +  +       
Sbjct: 690 SLVSGLQSLQGQVSNLKKGLTDTQSGLTTAGTGWGTASAAAGSLASSISKVSDPTLKAEL 749

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
              +      +SS +      G            +       + M        S    + 
Sbjct: 750 QKELETLNSGLSSTKSGLDTVGS----------GLTTAGTAANNMKGAASDIRSAAGSLG 799

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            ++       ++  ++ L   + Q  S +  ++ Q  S  + L+ G S   +    V  L
Sbjct: 800 SSTSAASTADLSTKVQQLQASVSQLASGSNILSTQAASGINRLKSGLSKIGQMQSAVDAL 859

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           A     +    +S            +  +    +   +    +    S  +    +    
Sbjct: 860 AAGAHKLYTGSNSLYSGLSEGMAGALALSQGANQV-NSGASAVASGASQVNSGAGQVNSG 918

Query: 429 FNHISESYSNTVGVNLQEELSF 450
              ++       GV+   +L+ 
Sbjct: 919 AGQLATGL--ASGVSGAAQLAN 938


>gi|166712061|ref|ZP_02243268.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 251

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 29/141 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q  +++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +  S     +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANSQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VLDEGGNPMTIPPHQAMEIGS 141


>gi|148926662|ref|ZP_01810343.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845181|gb|EDK22276.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 34/159 (21%), Gaps = 30/159 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     +     E  +     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDRIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                     +   E Y  N     +  +   N  +   
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAD 154


>gi|320107020|ref|YP_004182610.1| flagellar basal-body rod protein FlgC [Terriglobus saanensis
          SP1PR4]
 gi|319925541|gb|ADV82616.1| flagellar basal-body rod protein FlgC [Terriglobus saanensis
          SP1PR4]
          Length = 152

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          M+L  + + + +  +    +   +  N+ NA+         Y R+  +   +    T  +
Sbjct: 1  MNLFGMMDISASALHAQRVRAEVVATNMANAETTRTADGGAYSRKHVLLASAESGNTFSS 60

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQS 82
                ++           +    +   
Sbjct: 61 SFRHAGSLLSTPSQTVEGGVDVTSVEGD 88


>gi|229058421|ref|ZP_04196805.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH603]
 gi|228719930|gb|EEL71520.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH603]
          Length = 257

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 48/222 (21%), Gaps = 18/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q       N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTSSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIGRLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              +V    K  T ++ +  D  +   ++   + E   +   
Sbjct: 180 NARLVQRENKSFTLAEGNLADLPNGTGIVKNHMLENSNVDMT 221



 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 203 NGTGIVKNHMLENSNVDMTKEMADLMSSQKMIQASQRIMTSFDKIYE 249


>gi|94969949|ref|YP_591997.1| flagellar basal-body rod protein FlgG [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551999|gb|ABF41923.1| flagellar basal-body rod protein FlgG [Candidatus Koribacter
           versatilis Ellin345]
          Length = 244

 Score = 42.7 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/145 (6%), Positives = 29/145 (20%), Gaps = 6/145 (4%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRSENKNMFD 64
             A       SQQ     +++ N +   Y  + +             +    +   N   
Sbjct: 6   YVACAGLVARSQQLDLAAQDLANINTSGYRSQRSAFRAVLAKSAGANLTGWSAAVNNFGT 65

Query: 65  ---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                L      + +           +                   + S     +     
Sbjct: 66  LGETRLSRTPGNLEKTGNPLDLGLEGDGFFVVQTPAGPRYTRRGNFQISSAGALETSDGY 125

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQ 146
            +  ++        +   ++   + 
Sbjct: 126 PVQGSLGTVRVPNGELAISADGTLS 150


>gi|259907635|ref|YP_002647991.1| Flagellar basal-body rod protein FlgF [Erwinia pyrifoliae Ep1/96]
 gi|224963257|emb|CAX54741.1| Flagellar basal-body rod protein FlgF [Erwinia pyrifoliae Ep1/96]
 gi|283477477|emb|CAY73393.1| Flagellar basal-body rod protein flgF [Erwinia pyrifoliae DSM
          12163]
          Length = 245

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57
          +      A +  N A  + A    N+ NA    +  +       P     +  R+
Sbjct: 1  MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAVPVEGETIATRA 55



 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 64/234 (27%), Gaps = 6/234 (2%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           +  M++         +  + +  ++  G        +A+    +++              
Sbjct: 6   YTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAVPVEGETIATRALVVDSTPYHD 65

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                      + +       ++A  + D      +  +  +  +     N   L   G+
Sbjct: 66  GSMGPLNHTGRSLDVALPQNGWLAVAMPDGTEGYTRNGAIEVDRDGALSVNGYPLMGDGA 125

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +   +A    L        +   +         N ++ +      G       
Sbjct: 126 PLTVPPQSAVTIAPDGTL-TALGAGDDPTTVTPVGRLKMANASIQDL---LHGDEGLFHP 181

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            + D       +   +S        V+  + ++ +I   +S++++ K I   D+
Sbjct: 182 KAGDSLPVDAGLR--LSPETLEGSNVSPVKAMTEMIATARSFDMNMKTIRTADE 233


>gi|167469720|ref|ZP_02334424.1| flagellar hook protein FlgE [Yersinia pestis FV-1]
          Length = 73

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV 53
           F++A +  N AS     I  NI N+    +                 
Sbjct: 2  GFSQAVSGMNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTG 49


>gi|57237716|ref|YP_178964.1| flagellar hook-associated protein [Campylobacter jejuni RM1221]
 gi|57166520|gb|AAW35299.1| flagellin family protein [Campylobacter jejuni RM1221]
 gi|315058327|gb|ADT72656.1| Flagellar hook-associated protein flgL [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 750

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 118/388 (30%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++       + ++   ++ +        D +   + D         +      +K     
Sbjct: 365 NNGDITKLNNPVTVTINNQQFTIDLKQTDFIKSKMTDTDGNATNGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGNNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            + +    T     +        +     S  +T       I          + +     
Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQVNNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           +        +  + ++    +   +            +S     + ++D           
Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
            I+ T+   P +  + +        +   + ++ ++       N   DS ++N     + 
Sbjct: 605 TITSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +    ++ ++  +  ++    SN + V+  E +  L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|296133052|ref|YP_003640299.1| flagellar basal-body rod protein FlgB [Thermincola sp. JR]
 gi|296031630|gb|ADG82398.1| flagellar basal-body rod protein FlgB [Thermincola potens JR]
          Length = 138

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 14/43 (32%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
                  Q   + AS +  +I  N+ N D   Y R D     
Sbjct: 7  TSDTMGLLQRALDAASMRNEAIANNMANVDTPGYKRVDVAFEE 49


>gi|94500242|ref|ZP_01306775.1| flagellar basal-body rod protein FlgF [Oceanobacter sp. RED65]
 gi|94427541|gb|EAT12518.1| flagellar basal-body rod protein FlgF [Oceanobacter sp. RED65]
          Length = 249

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/252 (6%), Positives = 48/252 (19%), Gaps = 23/252 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIV--RNIENADNKNY------VRRDTMTTISPENVTVVT 54
           +      A +                N+ N     +       R   +            
Sbjct: 1   MDRALYIAMSG--AKQNTLGQTAEANNLANVSTTGFRRDFEQARSMPVFGDYYPTRAYAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           +     +     L    + +      Q + A+ +         N         +      
Sbjct: 59  EERPASDFNPGPLVETGNDLDLAIDNQGWFAVLDA------NGNEAYTRRGDFQVDGLGR 112

Query: 115 SKNLSEDILGKTV-------IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
             N     L            +  +       +     ++    A  E    ++     +
Sbjct: 113 LVNGQNQQLIGAGGPIVLPPYEKVQIAADGTVSIQGVGEEPAVIAGIEQIKLVNPDLTQM 172

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTL 227
            +       ++          D   Q      + S +  + ++ +  +    Y      +
Sbjct: 173 EKGEDGLFRLRDAEPGAIQPADPTVQVASGYVEGSNVSAVHSLTQIMSLHRQYEMQVKMM 232

Query: 228 FETVPRDINFEK 239
                       
Sbjct: 233 STADENAQTTAS 244


>gi|57237000|ref|YP_178801.1| flagellar basal-body rod protein [Campylobacter jejuni RM1221]
 gi|86149760|ref|ZP_01067989.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|57165804|gb|AAW34583.1| flagellar basal-body rod protein [Campylobacter jejuni RM1221]
 gi|85839578|gb|EAQ56838.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|315058160|gb|ADT72489.1| Flagellar basal-body rod protein flgF [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 30/144 (20%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     +     E  +     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDRIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|329898291|ref|ZP_08272374.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium
          IMCC3088]
 gi|328920856|gb|EGG28299.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium
          IMCC3088]
          Length = 141

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
          M L  +F+ A +     + +  +   N+ NA N        Y  +  +     E+  +  
Sbjct: 1  MGLTDIFDIAGSALAGQTTRLHATASNMANASNVSSTAEDAYKAKRVVFRTVLEDQIIGN 60

Query: 55 QRSENKNMF 63
           R    ++ 
Sbjct: 61 VRRPAGSLL 69


>gi|153952418|ref|YP_001398358.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939864|gb|ABS44605.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENR 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDTFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|325524331|gb|EGD02432.1| flagellar hook-associated protein FlgK [Burkholderia sp. TJI49]
          Length = 48

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
           N   +  N A     +  +NI NA    Y     +   +    T   
Sbjct: 1  MNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSG 48


>gi|126697816|ref|YP_001086713.1| flagellar basal-body rod protein [Clostridium difficile 630]
 gi|115249253|emb|CAJ67066.1| Flagellar basal-body rod protein FlgB [Clostridium difficile]
          Length = 105

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            ++  +   +  + +  +I  NI N + + Y R       +
Sbjct: 2  NTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYITFEET 43


>gi|150395483|ref|YP_001325950.1| flagellar basal body rod protein FlgC [Sinorhizobium medicae
          WSM419]
 gi|150026998|gb|ABR59115.1| flagellar basal-body rod protein FlgC [Sinorhizobium medicae
          WSM419]
          Length = 139

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI---SPENVTV 52
          L +    + +     S +   +  NI NA +         Y R+              ++
Sbjct: 4  LTSALKVSASGLQAESTRLRIVSENIANARSTGDAPGTDPYRRKTISFAAEVDRASGASL 63

Query: 53 VTQRS 57
          V    
Sbjct: 64 VEVER 68


>gi|74317654|ref|YP_315394.1| flagellar basal-body rod protein FlgC [Thiobacillus denitrificans
          ATCC 25259]
 gi|74057149|gb|AAZ97589.1| flagellar basal-body rod protein FlgC [Thiobacillus denitrificans
          ATCC 25259]
          Length = 134

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL  +FN A +  N  SQ+  ++  N+ NAD+        Y  +  +   +P      T
Sbjct: 1  MSLFNIFNVAGSAMNAQSQRLNTVASNLANADSATSANGQPYKAKQVVFAAAPVGDNGAT 60


>gi|329888225|ref|ZP_08266823.1| flagellar basal-body rod protein FlgF [Brevundimonas diminuta ATCC
           11568]
 gi|328846781|gb|EGF96343.1| flagellar basal-body rod protein FlgF [Brevundimonas diminuta ATCC
           11568]
          Length = 245

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/131 (7%), Positives = 27/131 (20%), Gaps = 4/131 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61
           +        +      ++   +  N+ NAD   +     M      +       R     
Sbjct: 1   MENAAYIGLSRQMTLRRELDIVANNVANADTTGFKVEQLMVGTEVGQRARNDNIRPSASF 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + DK +         ++  +  +   E           +              E      
Sbjct: 61  VLDKGVGRDFGQGTLKQTGRELDFGIEGEGAFFTVQTPSGPAYTRDGAFVTDPEGRLTTK 120

Query: 119 SEDILGKTVID 129
               +     +
Sbjct: 121 QGLPVLADGAE 131



 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +             + +       VN   E++ LI++ ++Y    K+I   + +
Sbjct: 180 NASNAQPMDATDAQVRQGMLEGSNVNTLVEITNLIEISRAYERVTKMIENANDL 233


>gi|21242726|ref|NP_642308.1| flagellar basal body rod protein FlgF [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108202|gb|AAM36844.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 251

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/141 (6%), Positives = 27/141 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q   ++  N+ N D   +      T            R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQGTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +          L         ++      +       +L  +        +   
Sbjct: 61  DQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +     +              
Sbjct: 121 VLDEGGNPMTIPPHQAMEIGS 141


>gi|313682109|ref|YP_004059847.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313154969|gb|ADR33647.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 270

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 49/224 (21%), Gaps = 22/224 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD-----------TMTTISPENVT 51
           +   +  A         +  +I  N+ NA+   Y R             T  +  P    
Sbjct: 1   MQTGYYAATGGMVAQFNRMDTIASNLANANTAGYKRDQLITGDFARLYKTAQSELPIANQ 60

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQ--------RLLQSFEALKEMMSADDHYNNSPTHY 103
                        +V     +   Q                + +    A +         
Sbjct: 61  TEAAAQYFNRALSRVPQITDAYTDQSLGAMQRTDNTFDLALSKEGQFFAVNTPQGIRLTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 + E    N       + +  +   +  N   S   + K    +           
Sbjct: 121 DGSFTLNDEGKLVNKQG---HEVLAADKTPITFNPQDSVITLDKNGQFSTNVPGTTQMVA 177

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
            + L  +   N     K  +     +  D    L +  S + G 
Sbjct: 178 NKRLLVVEPQNIRNIMKEGNNLYLPEAADPLTPLAESGSVMQGF 221


>gi|308173581|ref|YP_003920286.1| flagellar component of cell-proximal portion of basal-body rod
          [Bacillus amyloliquefaciens DSM 7]
 gi|307606445|emb|CBI42816.1| flagellar component of cell-proximal portion of basal-body rod
          [Bacillus amyloliquefaciens DSM 7]
 gi|328553487|gb|AEB23979.1| flagellar basal body rod protein FlgC [Bacillus amyloliquefaciens
          TA208]
 gi|328911722|gb|AEB63318.1| flagellar component of cell-proximal portion of basal-body rod
          [Bacillus amyloliquefaciens LL3]
          Length = 150

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 10/57 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISP 47
          MS     N + +       +   +  N+ N D             Y R+        
Sbjct: 1  MSGFQSLNISGSALTAQRVRMDVVSSNLANMDTTRAKQVNGEWVPYRRKLVSLQSGG 57


>gi|295696111|ref|YP_003589349.1| flagellar basal-body rod protein FlgC [Bacillus tusciae DSM 2912]
 gi|295411713|gb|ADG06205.1| flagellar basal-body rod protein FlgC [Bacillus tusciae DSM 2912]
          Length = 155

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 8/52 (15%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKN-YVRRDTMTT 44
          M+    F  + +  +    +   I  NI NAD           Y RR  +  
Sbjct: 1  MAWQDTFAISGSGLSAQRLRMDVIAGNIANADTTRRPDGTPGPYRRRMVVME 52


>gi|297569162|ref|YP_003690506.1| flagellar basal-body rod protein FlgC [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296925077|gb|ADH85887.1| flagellar basal-body rod protein FlgC [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 144

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M +L     + +       +      N+ NA+     +   Y  +  +    P
Sbjct: 1  MDILTAMKISGSALKAERSRLNVASMNLANANTTRTMEGGPYRAKSVVFEAKP 53


>gi|126738579|ref|ZP_01754284.1| flagellar basal-body rod protein FlgF [Roseobacter sp. SK209-2-6]
 gi|126720378|gb|EBA17084.1| flagellar basal-body rod protein FlgF [Roseobacter sp. SK209-2-6]
          Length = 238

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 34/118 (28%), Gaps = 9/118 (7%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQRS--ENKNMFD 64
           Q+      ++   +  NI N+    Y     + +     SP   ++   R+   N ++  
Sbjct: 12  QSGLM---REMRVVANNIANSATTGYRSEGLIFSEYVQSSPGQQSLSMSRANIYNTSLEQ 68

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             L             + F  ++  M        + +        +++ Y    +   
Sbjct: 69  GQLTKTGGTFDFAIEGEGFFMVETPMGERLTRAGAFSPNAEGDLVTMDGYRVMDAGGS 126


>gi|15616944|ref|NP_240157.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219682252|ref|YP_002468636.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|11386805|sp|P57420|FLGC_BUCAI RecName: Full=Flagellar basal-body rod protein flgC
 gi|25298910|pir||C84969 flagellar basal-body rod protein flgC [imported] - Buchnera sp.
          (strain APS)
 gi|10039009|dbj|BAB13043.1| flagellar basal-body rod protein flgC [Buchnera aphidicola str.
          APS (Acyrthosiphon pisum)]
 gi|219621985|gb|ACL30141.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          Tuc7 (Acyrthosiphon pisum)]
 gi|311086076|gb|ADP66158.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          LL01 (Acyrthosiphon pisum)]
 gi|311086647|gb|ADP66728.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          TLW03 (Acyrthosiphon pisum)]
 gi|311087233|gb|ADP67313.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          JF99 (Acyrthosiphon pisum)]
 gi|311087752|gb|ADP67831.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          JF98 (Acyrthosiphon pisum)]
          Length = 136

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          MSLL +FN A +     SQ+   I  N+ N D+  Y 
Sbjct: 1  MSLLNIFNIAGSAMIAQSQKLNVIASNLANMDSTIYK 37


>gi|308184156|ref|YP_003928289.1| flagellar basal-body rod protein [Helicobacter pylori SJM180]
 gi|308060076|gb|ADO01972.1| flagellar basal-body rod protein [Helicobacter pylori SJM180]
          Length = 269

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 51/231 (22%), Gaps = 17/231 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                +  
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFL---------RLYQQY 51

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + L   +      + L        ++S      +     +     +       L+   
Sbjct: 52  -REQLPLENQTKASAKYLNRNLNRVPILSEIYTDRS-----LGTFEGTHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 IYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEIEVDQN 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
                 D   Q       +                 +YT  G ++ +    
Sbjct: 166 GGITFRDNEAQIQAGALALVSFS--EPKNLKKIGQNLYTYQGESVHQVSDS 214


>gi|217077497|ref|YP_002335215.1| flagellar basal-body rod protein FlgC [Thermosipho africanus
          TCF52B]
 gi|217037352|gb|ACJ75874.1| flagellar basal-body rod protein FlgC [Thermosipho africanus
          TCF52B]
          Length = 137

 Score = 42.7 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M+   +   +    +    +   I  N+ N++         Y R+  +    
Sbjct: 1  MNEFNIMTISATGMSAQRLRIDVISNNLANSETTRTENGEPYRRKVPVFQEL 52



 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E+  +I  +++Y  +      T  M+ + L+  +
Sbjct: 98  NVNVVREMVDMINAQRAYEANVTAFNTTKAMINSALQIGR 137


>gi|302872574|ref|YP_003841210.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          obsidiansis OB47]
 gi|302575433|gb|ADL43224.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          obsidiansis OB47]
          Length = 133

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI NAD   Y  +D     
Sbjct: 23 EIISNNIANADTPGYKAKDLNFEA 46


>gi|56419751|ref|YP_147069.1| flagellar basal body rod protein FlgB [Geobacillus kaustophilus
          HTA426]
 gi|297530609|ref|YP_003671884.1| flagellar basal-body rod protein FlgB [Geobacillus sp. C56-T3]
 gi|56379593|dbj|BAD75501.1| flagellar basal-body rod protein [Geobacillus kaustophilus
          HTA426]
 gi|297253861|gb|ADI27307.1| flagellar basal-body rod protein FlgB [Geobacillus sp. C56-T3]
          Length = 129

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 1  MSLLAVFNKA--QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M+L +       +     A+ +  +I  NI NAD   Y  +D     
Sbjct: 1  MALFSA-TIGWLEQGLRYAALRQQAIADNIANADTPGYKAKDVRFQA 46


>gi|310764859|gb|ADP09809.1| Flagellar basal-body rod protein FlgF [Erwinia sp. Ejp617]
          Length = 245

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57
          +      A +  N A  + A    N+ NA    +  +       P     +  R+
Sbjct: 1  MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAVPVEGETIATRA 55


>gi|308063216|gb|ADO05103.1| flagellar basal-body rod protein [Helicobacter pylori Sat464]
          Length = 269

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMVAQFNRLDLTSNNLANLNTNGFKRDDAVTGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|292489132|ref|YP_003532019.1| flagellar basal-body rod protein FlgF [Erwinia amylovora
          CFBP1430]
 gi|292900251|ref|YP_003539620.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291200099|emb|CBJ47225.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291554566|emb|CBA22179.1| Flagellar basal-body rod protein flgF [Erwinia amylovora
          CFBP1430]
 gi|312173290|emb|CBX81545.1| Flagellar basal-body rod protein flgF [Erwinia amylovora ATCC
          BAA-2158]
          Length = 245

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57
          +      A +  N A  + A    N+ NA    +  +       P     +  R+
Sbjct: 1  MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAVPVEGETIATRA 55



 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 64/234 (27%), Gaps = 6/234 (2%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           +  M++         +  + +  ++  G        +A+    +++              
Sbjct: 6   YTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAVPVEGETIATRALVVDSTPYHD 65

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                      + +       ++A  + D      +  +  +  +     N   L   G+
Sbjct: 66  GTMGPLNHTGRSLDVALPQNGWLAVAMPDGTEAYTRNGAIEVDRDGALSVNGYPLMGDGA 125

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                  +   +A    L        +   +         N ++ +      G       
Sbjct: 126 PLTVPPQSAVTIAPDGTL-TALGAGDDPTTVTPVGRLKLANASIQDL---LHGDEGLFHP 181

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            + D       +   +S        V+  + ++ +I   +S++++ K I   D+
Sbjct: 182 KAGDSLPADAALR--LSPETLEGSNVSPVKAMTEMIATARSFDMNMKTIRTADE 233


>gi|307293786|ref|ZP_07573630.1| flagellar basal-body rod protein FlgF [Sphingobium chlorophenolicum
           L-1]
 gi|306879937|gb|EFN11154.1| flagellar basal-body rod protein FlgF [Sphingobium chlorophenolicum
           L-1]
          Length = 246

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 29/125 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  + N A      A  + A+I  N+ N +   +                +  R++    
Sbjct: 1   MDRLVNTALTAMRGAMARQAAISNNLANVNTTGFRAEIANAETRWIKGDNLNTRAQASEQ 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 A  +       L        M++               L+ S           +
Sbjct: 61  VVAADMAQGAVTETGNPLDVAMNGDAMLAVQAPDGGEAYTRRGDLKVSDSGLLTTGDGLV 120

Query: 123 LGKTV 127
           +    
Sbjct: 121 VLGEG 125


>gi|296283243|ref|ZP_06861241.1| flagellar basal body rod protein FlgB [Citromicrobium bathyomarinum
           JL354]
          Length = 124

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
             I +NI N D   Y  R+         V         +      + +   A+G ++   
Sbjct: 9   QVIAQNIANGDTPGYKAREVEAPSFAGMVDASGAGRVARPTV--QISSEMRALGARQQSS 66

Query: 82  SFEALKEMMSADDHYNNSPT 101
           S   L E +       N+ T
Sbjct: 67  SAIILDENIVETKPDGNNVT 86


>gi|209884536|ref|YP_002288393.1| flagellar basal-body rod protein FlgC [Oligotropha
          carboxidovorans OM5]
 gi|209872732|gb|ACI92528.1| flagellar basal-body rod protein FlgC [Oligotropha
          carboxidovorans OM5]
          Length = 141

 Score = 42.7 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN------YVRRDTMTTIS 46
          M  L   + A +     + +   I  NI NA           Y R+      +
Sbjct: 5  MDFLKSMSIATSGLRAQAGRMRVISENIANADSTAGTAGGDPYRRKVPTFVSA 57



 Score = 36.5 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E++ + + ++SY  +  +I  T +M+Q  L+ +K
Sbjct: 101 NVNSLVEMTDMREAQRSYEANLNIISATRRMIQRTLDILK 140


>gi|315124199|ref|YP_004066203.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315017921|gb|ADT66014.1| putative flagellar basal-body rod protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 270

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLAKDGNFQLDDEGYLVNKQGY 139


>gi|54307271|ref|YP_128291.1| FlgF flagellar basal-body rod protein [Photobacterium profundum
           SS9]
 gi|46911691|emb|CAG18489.1| Hypothetical FlgF flagellar basal-body rod protein [Photobacterium
           profundum SS9]
          Length = 244

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 53/241 (21%), Gaps = 9/241 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           L    + A  +             N+ N +   + R D     S        +       
Sbjct: 5   LFTAMSGASRVMMAQQ----VHANNLANVNTAGF-RADIEQAESVAVKGNGFETRTLVAA 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLSED 121
                     A+             +   A +  +N              E         
Sbjct: 60  RAGGTDFSHGALQHTDNPFDMAIRGDGFFAVEAGDNDEAYTRTGNFHLDAEGTLLLGDRP 119

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND-AIKFK 180
           +L         E  Q    +   +  +       +  E+  L+    +L  ++       
Sbjct: 120 VLSTGGPIVIPEYQQLDIGADGTISIVP--LGSSLVQEVGQLKLVKPDLANLHKSEDGLF 177

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             +        D+   +     E   ++ +    N+M +  +    +      +      
Sbjct: 178 RVAGQGGQAEADENVTVASGYIETSNVNAVESMINNMSLSRNFEFQIKMMKTAEDLASAG 237

Query: 241 N 241
           N
Sbjct: 238 N 238


>gi|91225874|ref|ZP_01260843.1| polar flagellar FlgF [Vibrio alginolyticus 12G01]
 gi|254230139|ref|ZP_04923534.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|262394938|ref|YP_003286792.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|269965423|ref|ZP_06179542.1| flagellar basal-body rod protein FlgF [Vibrio alginolyticus 40B]
 gi|91189524|gb|EAS75800.1| polar flagellar FlgF [Vibrio alginolyticus 12G01]
 gi|151937332|gb|EDN56195.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|262338532|gb|ACY52327.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|269829902|gb|EEZ84132.1| flagellar basal-body rod protein FlgF [Vibrio alginolyticus 40B]
          Length = 249

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 24/125 (19%), Gaps = 14/125 (11%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLAQARSMQAYGEGHPSRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        + ++ +      H           L+       
Sbjct: 60  ERPGHNFAQGSVITTGRDLDVTIEGSGWISVLD------HTGKEGLTRNGNLKVDQNGML 113

Query: 116 KNLSE 120
            N S 
Sbjct: 114 TNASG 118



 Score = 40.0 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 19/41 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         VN   E++ LI +++ + +  K++   ++M
Sbjct: 198 SLQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEM 238


>gi|312962293|ref|ZP_07776784.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6]
 gi|311283220|gb|EFQ61810.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6]
          Length = 38

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 446 EELSFLIKVEQSYNISNKLIMFTDKML 472
           EE+  +I  +++Y +++K+I   D+ML
Sbjct: 5   EEMVNMITTQRAYEMNSKVISTADQML 31


>gi|227112519|ref|ZP_03826175.1| flagellar basal body rod protein FlgC [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
 gi|227328336|ref|ZP_03832360.1| flagellar basal body rod protein FlgC [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
          Length = 134

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F  + +  +  SQ+      N+ NA          Y  +  +  ++        
Sbjct: 1  MSLLNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGEPYRAKQVVFEVNAAPGQSTG 60

Query: 55 QRSENKNMFD 64
              +  + D
Sbjct: 61 GVRVSNVIED 70


>gi|219681697|ref|YP_002468083.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          5A (Acyrthosiphon pisum)]
 gi|257471393|ref|ZP_05635392.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          LSR1 (Acyrthosiphon pisum)]
 gi|219624540|gb|ACL30695.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          5A (Acyrthosiphon pisum)]
          Length = 136

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          MSLL +FN A +     SQ+   I  N+ N D+  Y 
Sbjct: 1  MSLLNIFNIAGSAMIAQSQKLNVIASNLANMDSTIYK 37


>gi|49480334|ref|YP_035891.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331890|gb|AAT62536.1| flagellar basal-body rod protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +S      LL    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSDTDF--LLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENHERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              ++    K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NNRLIQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMT 229



 Score = 40.4 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|28897554|ref|NP_797159.1| flagellar basal body rod protein FlgF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839688|ref|ZP_01992355.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ3810]
 gi|260364612|ref|ZP_05777214.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           K5030]
 gi|260878283|ref|ZP_05890638.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AN-5034]
 gi|260898113|ref|ZP_05906609.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           Peru-466]
 gi|260901955|ref|ZP_05910350.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ4037]
 gi|5361009|gb|AAD42916.1|U12817_10 polar flagellar FlgF homolog [Vibrio parahaemolyticus]
 gi|28805766|dbj|BAC59043.1| polar flagellar FlgF [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746798|gb|EDM57786.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ3810]
 gi|308086109|gb|EFO35804.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           Peru-466]
 gi|308090198|gb|EFO39893.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AN-5034]
 gi|308106789|gb|EFO44329.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ4037]
 gi|308115108|gb|EFO52648.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           K5030]
 gi|328473452|gb|EGF44300.1| flagellar basal body rod protein FlgF [Vibrio parahaemolyticus
           10329]
          Length = 249

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/129 (7%), Positives = 23/129 (17%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +        + ++ +      H           L+        
Sbjct: 61  RPGHNFAQGSVITTGRDLDITVEGSGWISVLD------HTGKEGLTRNGNLKIDQNGMLT 114

Query: 117 NLSEDILGK 125
           N S   +  
Sbjct: 115 NASGHAVLG 123



 Score = 40.0 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I         VN   E++ LI +++ + +  K++   ++M
Sbjct: 198 SIQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEM 238


>gi|115523557|ref|YP_780468.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris
           BisA53]
 gi|115517504|gb|ABJ05488.1| flagellar basal body rod protein [Rhodopseudomonas palustris
           BisA53]
          Length = 254

 Score = 42.3 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/131 (9%), Positives = 27/131 (20%), Gaps = 6/131 (4%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSENKNMFDKVLHAHSS 72
           +Q   +  N+ N +   +    T+            N     +R              S 
Sbjct: 17  RQMDVVANNVANMNTTGFKAERTLFEEYLSPRAHEDNFVGRDRRVSYVQDRATFHDFSSG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
            + Q +         E                  L+ + +      S   +  T      
Sbjct: 77  PLEQTKNPLDVAIDGEAFLVVQTPAGERYTRDGSLQINSQGQLVTASGYQVLGTNGPIVF 136

Query: 133 EVVQNFNTSAR 143
           +        A 
Sbjct: 137 QSTDKDINIAA 147


>gi|319409192|emb|CBI82836.1| Flagellar basal-body rod protein flgF [Bartonella schoenbuchensis
           R1]
          Length = 244

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/158 (5%), Positives = 34/158 (21%), Gaps = 26/158 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV-----------------RRDTMTTI 45
           +        +   + +++  +I +N+ N +   +                  R   +   
Sbjct: 1   MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPVAREQRDQVVFAS 60

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
           + +                  L    +A+       S+ +++         +        
Sbjct: 61  AGKGYISTD---------RGALVKTGNALDVAVGGDSYFSMQASFGPVYTRDGRMIMTPE 111

Query: 106 KLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAR 143
               S+             +         +    +  +
Sbjct: 112 GGLVSVTGLPFLDDGGAPIQLNPAGGTPRISADGSIYQ 149


>gi|217031579|ref|ZP_03437084.1| hypothetical protein HPB128_21g137 [Helicobacter pylori B128]
 gi|298736702|ref|YP_003729232.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8]
 gi|216946779|gb|EEC25375.1| hypothetical protein HPB128_21g137 [Helicobacter pylori B128]
 gi|298355896|emb|CBI66768.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8]
          Length = 269

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/188 (9%), Positives = 36/188 (19%), Gaps = 16/188 (8%)

Query: 10  AQNICNNAS-QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
           A          +      N+ N +   + R D +T                     +   
Sbjct: 7   ATTGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR--------------LYQQYR 52

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
                  Q +    +     +              +     +       L+   L   + 
Sbjct: 53  EQLPLEDQTKASAKYLNR-NLNRVPVLSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQ 111

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
            N           + +        +    L  S L      + + N  I+          
Sbjct: 112 TNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGGITFR 171

Query: 189 DFLDQRDV 196
           D   Q   
Sbjct: 172 DNEAQIQA 179


>gi|223937320|ref|ZP_03629226.1| conserved repeat domain protein [bacterium Ellin514]
 gi|223894105|gb|EEF60560.1| conserved repeat domain protein [bacterium Ellin514]
          Length = 2138

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/407 (7%), Positives = 85/407 (20%)

Query: 25   VRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFE 84
              NI  A N  YVR +     +     +V+    +    D VL+ +++     + +    
Sbjct: 991  GNNIPGATNATYVRSNVQLADAGTYTVLVSNPGGSTQSADAVLNLNAAPSITGQPVSLVV 1050

Query: 85   ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
               +  S     + SP                  S   L     + +       + +A  
Sbjct: 1051 NPGDPASFTVAADGSPAATFQWWFAGAPIADATDSTFALASAQPNQSGNYWVVASNAAGS 1110

Query: 145  VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEI 204
            V          I   I+      S     N                       +   S  
Sbjct: 1111 VTSSIVSLTVNIPAGIAQQPVSQSVTLGGNATFSVTATGTAPLGYQWTFNGAPIIGASAS 1170

Query: 205  IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
                   + N                    ++        +  +     +     ++   
Sbjct: 1171 SYTILNAQTNKAGSYAVVVSNVAGTVTSSTVSLTVNIPAGIAQQPVSQSVTLGGNATFSV 1230

Query: 265  SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
            +A     +        + +    +    +      +      +  N              
Sbjct: 1231 TATGTAPLGYQWSFNGAPIFGATDSSYTILNAQTNNAGSYAVLVSNVAGTVTSSTVSLAV 1290

Query: 325  DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            ++   +                          +  +++++   ++   D      ++   
Sbjct: 1291 NIPPSIDLPPVSQSVTIGSNAVFSVTATGTAPMGYQWIFDGAPISSATDSSYSVLNAQTN 1350

Query: 385  NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            N     V   N   ++     +    +  + S        +      
Sbjct: 1351 NAGSYAVVVSNVAGSVTSSIVSLTVNIPPDISQQPVSQTVTMGGNTT 1397


>gi|154253013|ref|YP_001413837.1| flagellar basal body rod protein FlgC [Parvibaculum
          lavamentivorans DS-1]
 gi|154156963|gb|ABS64180.1| flagellar basal-body rod protein FlgC [Parvibaculum
          lavamentivorans DS-1]
          Length = 139

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 7/52 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          M L+     A +     S +   I  NI NAD+ +       Y R+      
Sbjct: 4  MDLIKSMMVAASGLKAQSGRMRVIAENIANADSTSRVAGGDPYRRKIVTFED 55


>gi|194016593|ref|ZP_03055207.1| flagellar hook-basal body complex protein FlhO [Bacillus pumilus
          ATCC 7061]
 gi|194012066|gb|EDW21634.1| flagellar hook-basal body complex protein FlhO [Bacillus pumilus
          ATCC 7061]
          Length = 279

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A +      ++   +  NI NA+   Y 
Sbjct: 1  MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYK 35


>gi|47223942|emb|CAG06119.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2724

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 8/243 (3%)

Query: 201  ISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVS 260
            +S  +G     + N +     +      ++          +S   T +     + G VV+
Sbjct: 1839 LSTKMGTPITFQQNKNFQQSFATWVKQGQSTQAGSETTMTSSSGQTFQITGTSVGGKVVT 1898

Query: 261  SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320
            +          + A  +I    VP  Q  + +  +VL    S     +     +      
Sbjct: 1899 TKL-------SVPANSKIVTVNVPTSQGGVVQ-QKVLGIIPSSTAGGSQTYTTLQPRTNV 1950

Query: 321  DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD 380
              I+       Q +  +  + P      + ++  G++ K  +     +            
Sbjct: 1951 LNIRANSPGSQQQVLASGQIRPGMTVIRTPIQQTGAMGKTVIQTPLVVQQGQGGQQVVTQ 2010

Query: 381  SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                  +   + G +   T+      S       R+        +      + +      
Sbjct: 2011 IIRGQAVSTAIPGASPVATVSGQGAASPTAPGTARAQGQGQVKLTLAQLGQLIQKQQAGS 2070

Query: 441  GVN 443
            GV+
Sbjct: 2071 GVD 2073


>gi|296103610|ref|YP_003613756.1| Flagellar basal-body rod protein FlgF [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295058069|gb|ADF62807.1| Flagellar basal-body rod protein FlgF [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 245

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 14/45 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP 47
          +      A +  N A  + A    N+ N+    +  +       P
Sbjct: 1  MDRAIYTAMSAANAALNRQAVTSNNLANSSTAGFRAQLAAFRSVP 45


>gi|170748127|ref|YP_001754387.1| flagellar basal body rod protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654649|gb|ACB23704.1| flagellar basal body rod protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 246

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/165 (5%), Positives = 37/165 (22%), Gaps = 2/165 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +      +      Q+  ++  N+ N     Y   +              +       
Sbjct: 1   MQSSLYVTLSAQMALEQRLNTVAANVANLGTVGYRAEEVKFETILS--QAGHRDVAFATP 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  L   +  + +           +   A             +++ +     ++L    
Sbjct: 59  GETFLSRKAGPLIKTDSPLDVGLQGDGWLAVRGPRGMVYTRDGRMQVTAAGDLQDLDGRA 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
           +            +    +  +   +    ++   L +  L    
Sbjct: 119 ILDPGGSPLTVDPEGPPLTIGQDGIVSQGTNQIGALGVFRLDPAA 163


>gi|88799019|ref|ZP_01114600.1| flagellar basal-body rod protein FlgC [Reinekea sp. MED297]
 gi|88778246|gb|EAR09440.1| flagellar basal-body rod protein FlgC [Reinekea sp. MED297]
          Length = 146

 Score = 42.3 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  VF+ + +  N  S +  +   N+ NA 
Sbjct: 1  MSLGNVFDISGSGMNAQSIRLNTTASNLANAQ 32


>gi|239909138|ref|YP_002955880.1| flagellar basal-body rod protein FlgC [Desulfovibrio magneticus
          RS-1]
 gi|239799005|dbj|BAH77994.1| flagellar basal-body rod protein FlgC [Desulfovibrio magneticus
          RS-1]
          Length = 147

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 7/54 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N---YVRRDTMTTISP 47
          M L    +   +  +       +I  N+ N            YVR+  M   +P
Sbjct: 1  MDLFTAMDIGSSGMSAQRTTMNTISMNLANIKTTRTVNGGGPYVRKSVMLESTP 54


>gi|254519424|ref|ZP_05131480.1| flagellar basal-body rod protein FlgC [Clostridium sp. 7_2_43FAA]
 gi|226913173|gb|EEH98374.1| flagellar basal-body rod protein FlgC [Clostridium sp. 7_2_43FAA]
          Length = 134

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTIS 46
          M +      + +  +    +  +I  NI NA          YVR+  +   +
Sbjct: 1  MGIFNTMRISASGLSAERLRMDTITSNITNATTTRGEDGKPYVRKIAVFQEN 52


>gi|121612923|ref|YP_001000393.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005336|ref|ZP_02271094.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249505|gb|EAQ72465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 270

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT------------------- 43
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIAGFKRIFKETQDELPIENH 60

Query: 44  ---TISPENVTVVTQRSENKNMFD---KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   N T+      ++   D     L A ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGIPQVSQEYTDFSLGFLKATNNPLDLAMTREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 EVRLTKDGNFQLDDEGYLVNKQGY 139


>gi|319898631|ref|YP_004158724.1| flagellar basal-body rod protein flgF [Bartonella clarridgeiae 73]
 gi|319402595|emb|CBI76140.1| Flagellar basal-body rod protein flgF [Bartonella clarridgeiae 73]
          Length = 244

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/206 (6%), Positives = 45/206 (21%), Gaps = 1/206 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-TVVTQRSENKN 61
           +        +      ++  +I +N+ N +   +             V      R    +
Sbjct: 1   MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLISPVAHEQGDRVFFTS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +     ++ Q           +   +             ++  + E    +++  
Sbjct: 61  AGKGYISTDRGSLVQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTGL 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                     +               I  D     ++ +   +         N ++    
Sbjct: 121 PFLDEGGAPIQLDPVGGIPRIVSDGSIYQDNSLVGKIGLFQFQPGTQLRYGPNSSVIPDR 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGI 207
           A         D       + S + G+
Sbjct: 181 AVLQSEAGSGDGVMQGYIESSNVNGV 206


>gi|206970637|ref|ZP_03231589.1| putative flagellar basal-body rod protein [Bacillus cereus AH1134]
 gi|206734273|gb|EDZ51443.1| putative flagellar basal-body rod protein [Bacillus cereus AH1134]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEATQNNIGRLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 194 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 249


>gi|311070151|ref|YP_003975074.1| flagellar basal-body rod protein [Bacillus atrophaeus 1942]
 gi|310870668|gb|ADP34143.1| flagellar basal-body rod protein [Bacillus atrophaeus 1942]
          Length = 271

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +L     A +   +  ++   +  NI NA+   Y 
Sbjct: 1  MLKGLYTATSAMISQQRRTEMLSNNIANANTSGYK 35


>gi|51598554|ref|YP_072742.1| flagellar basal body rod protein FlgB [Borrelia garinii PBi]
 gi|51573125|gb|AAU07150.1| flagellar basal-body rod protein [Borrelia garinii PBi]
          Length = 135

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 8/23 (34%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           I  NI N D  N+ R       
Sbjct: 24 VISDNIANVDTPNFKRSRISFES 46


>gi|229178180|ref|ZP_04305551.1| Flagellar basal-body rod protein flgG [Bacillus cereus 172560W]
 gi|228605310|gb|EEK62760.1| Flagellar basal-body rod protein flgG [Bacillus cereus 172560W]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAYVMDVNNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 194 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 249


>gi|146293689|ref|YP_001184113.1| flagellar basal body rod protein FlgF [Shewanella putrefaciens
           CN-32]
 gi|145565379|gb|ABP76314.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens
           CN-32]
 gi|319427088|gb|ADV55162.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens 200]
          Length = 247

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 24/127 (18%), Gaps = 12/127 (9%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R                  + + 
Sbjct: 5   LYISMSGAKQNMHELALRGNNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMIETPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++                   L         N   
Sbjct: 65  NFRSGPIKTTGRDLDVAIKGDGWFAVQ------AKDGAEAYTRSGSLSFDATGLLHNDRG 118

Query: 121 DILGKTV 127
           + +    
Sbjct: 119 NPVMGDA 125



 Score = 40.4 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         VN  +E+  LI++++ + +  K++   +++
Sbjct: 196 AVESGAVEGSNVNPVDEMVSLIELQRQFEMQVKMMKTAEEI 236


>gi|134300250|ref|YP_001113746.1| flagellar basal-body rod protein FlgB [Desulfotomaculum reducens
          MI-1]
 gi|134052950|gb|ABO50921.1| flagellar basal-body rod protein FlgB [Desulfotomaculum reducens
          MI-1]
          Length = 132

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 11/35 (31%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          Q   +  + +   I  NI N +   + +       
Sbjct: 13 QQGLDAGAARQRVIANNIANFNTPGFKKSYVSFED 47


>gi|317153845|ref|YP_004121893.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944096|gb|ADU63147.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 52/222 (23%), Gaps = 19/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE------NVTVVTQRSE 58
           +  + A     +   + +SI  N+ N +   + +                 VT  +   +
Sbjct: 4   SSLS-ALFGALSNEMRMSSIANNLANVNTTAFKKDHMAFHDVFTRFAHDYVVTTKSFLRD 62

Query: 59  NKNM-----------FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
                           D+ +      + Q      F    E         +         
Sbjct: 63  QDLFPDPKIMAKARLSDQTVDFSQGGMHQTGNQLDFALSGEGFFKAQVGGDELYTRAGNF 122

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFL 167
              ++          +       +          +  +  I  +     +L ++      
Sbjct: 123 LVDVDGTLVTQDGHPVMVEGGPLSVPPGAVMTVESDGMISINGEPAGAFDL-VTFEDLGG 181

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            E    N       A++ +  D   Q+  L +   E++    
Sbjct: 182 MERVGSNFYRAPGDAAEAEPEDLTVQQGFLEKGNVEVVTEMV 223



 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 52/175 (29%), Gaps = 6/175 (3%)

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           L     +      +       F   G      ++      T   N     + + +   G 
Sbjct: 77  LSDQTVDFSQGGMHQTGNQLDFALSGEGFFKAQVGGDELYTRAGNFLVDVDGTLVTQDGH 136

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                   +    G         +S     I    AG    VT  +     +  +  N  
Sbjct: 137 PVMVEGGPLSVPPG----AVMTVESDGMISINGEPAGAFDLVTFEDLGG--MERVGSNFY 190

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +     +++     + + +     V +  E+  +I+ ++++++  K++  TD +
Sbjct: 191 RAPGDAAEAEPEDLTVQQGFLEKGNVEVVTEMVQMIETQRAFDMYAKVLQGTDSL 245


>gi|57167708|ref|ZP_00366848.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228]
 gi|305433214|ref|ZP_07402370.1| flagellar basal-body rod protein [Campylobacter coli JV20]
 gi|57020830|gb|EAL57494.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228]
 gi|304443915|gb|EFM36572.1| flagellar basal-body rod protein [Campylobacter coli JV20]
          Length = 270

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/180 (8%), Positives = 39/180 (21%), Gaps = 30/180 (16%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     V        +     L   ++ +      +    L +         
Sbjct: 61  TRDASRFVNTTIDGVPQVSQGYTDFSLGSLKTTNNPLDLAITREDAFYLVQ-----TKDG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
                     + + E Y  N     +  +   N  +       +      +  +   E++
Sbjct: 116 EIRLSKDGNFQLNEEGYLVNKQGYRILSSDYFNNPQNAGIRLPNGAVYINVDKNGSIEVD 175


>gi|317177169|dbj|BAJ54958.1| flagellar basal-body rod protein [Helicobacter pylori F16]
          Length = 269

 Score = 42.3 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 47/223 (21%), Gaps = 15/223 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            +    D           +        + +   ++  Y  +G 
Sbjct: 166 GEITFRDNEAPIQAGALALVSFSEPKNLKKIGQNLYTYHGEGV 208


>gi|304392511|ref|ZP_07374451.1| flagellar basal-body rod protein FlgF [Ahrensia sp. R2A130]
 gi|303295141|gb|EFL89501.1| flagellar basal-body rod protein FlgF [Ahrensia sp. R2A130]
          Length = 250

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 36/153 (23%), Gaps = 3/153 (1%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
            +    + + +      ++  ++  N+ N+    +           + VT   +      
Sbjct: 5   GIETGLSVSLSSQLALERRLGTLADNVANSGTVGFRATHVRFAEIEQRVTGGDESQTTSF 64

Query: 62  MFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES-YSKNL 118
                  L   +  + +           E   A             + +   E       
Sbjct: 65  ASRGRSVLSPTAGTLVETGARLDVAIKGEGWFALQGAAGKIMTRDGRFQMDAEGQLRSVN 124

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
            +++L       A  V     T   +   ++  
Sbjct: 125 GDEVLDPGGAPLALNVAAGPPTIGSDGSIVQNG 157


>gi|226939373|ref|YP_002794446.1| FlgF1 [Laribacter hongkongensis HLHK9]
 gi|226714299|gb|ACO73437.1| FlgF1 [Laribacter hongkongensis HLHK9]
          Length = 247

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/164 (7%), Positives = 34/164 (20%), Gaps = 13/164 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF--- 63
              A N   +   Q  +   N+ NA    +          P        R+ + +     
Sbjct: 5   LYIAMNGAKHVELQQQTTANNLANAHTPGFKAELNAFRALPVVGDGTPTRAYSVDHTTGH 64

Query: 64  ---DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 +    +        + + A+++         N                 +    
Sbjct: 65  DESQGPMITTGNDQDFAVRGRGWFAVQD------PQGNEAYTRAGGFVLDENGIMRTRDG 118

Query: 121 DILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            ++             Q        V  ++ D        +  +
Sbjct: 119 RVIVGEGGPITVPPNSQVMIGEDGTVSAVQTDQIPRTVQVVDRI 162


>gi|163939582|ref|YP_001644466.1| flagellar basal body rod protein FlgG [Bacillus weihenstephanensis
           KBAB4]
 gi|163861779|gb|ABY42838.1| flagellar basal body rod protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 49/230 (21%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q       N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSATNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNVQMTNSATDF--FLDDGAAGTSSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDVET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNVADLPNGTGAVRNHMLENSNVDMTKEMADLMT 229



 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 203 NGTGAVRNHMLENSNVDMTKEMADLMTNQKMIQASQRIMTSFDKIYE 249


>gi|312876493|ref|ZP_07736476.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311796704|gb|EFR13050.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 133

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI NAD   Y  +D     
Sbjct: 23 EIISNNIANADTPGYKAKDLDFEA 46


>gi|307718595|ref|YP_003874127.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM
          6192]
 gi|306532320|gb|ADN01854.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM
          6192]
          Length = 138

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTIS 46
            I  NI NAD  N+ R +     S
Sbjct: 26 QIIANNIANADTPNFKRSELNFESS 50


>gi|299131784|ref|ZP_07024979.1| flagellar basal-body rod protein FlgF [Afipia sp. 1NLS2]
 gi|298591921|gb|EFI52121.1| flagellar basal-body rod protein FlgF [Afipia sp. 1NLS2]
          Length = 256

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/221 (8%), Positives = 48/221 (21%), Gaps = 9/221 (4%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-------VVTQRSENKN 61
            A +      +Q   +  N+ N     Y    ++      +            +R     
Sbjct: 7   IALSRQMTLERQLDVVANNVANVGTNGYKSDSSLFEEYLRSGAHEDNFAPGSDRRVSFVQ 66

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               V       +   +         +                 + + + +    N S  
Sbjct: 67  DRATVRDFSQGPLENTKSPLDVAISGKGFFTVQTPGGERYTRDGRFQINSQGQLVNSSGY 126

Query: 122 ILGKT--VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            +  T  VI           T    +  +     +   L         +    +      
Sbjct: 127 PVLGTNGVITFQPTDHDIKITDDGTITVLEGTITQTDSLRGKLKLTSFANRQQLQKEGSN 186

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
             A+  +     D    + +   E   ++ I   +  + + 
Sbjct: 187 LFAAPANVTGQADTVSTVKEGFIERSNVNAIAEMSRMLEIT 227


>gi|253688974|ref|YP_003018164.1| flagellar basal-body rod protein FlgC [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251755552|gb|ACT13628.1| flagellar basal-body rod protein FlgC [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 134

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F  + +  +  SQ+      N+ NA          Y  +  +  ++        
Sbjct: 1  MSLLNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGEPYRAKQVVFEVNAAPGQSTG 60

Query: 55 QRSENKNMFD 64
                 + D
Sbjct: 61 GVRVANVIED 70


>gi|315637965|ref|ZP_07893151.1| flagellar basal-body rod protein [Campylobacter upsaliensis JV21]
 gi|315482000|gb|EFU72618.1| flagellar basal-body rod protein [Campylobacter upsaliensis JV21]
          Length = 270

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 30/144 (20%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLEVITNNLANINTSGYKRDDVVIADFKRIFKETKDELPIENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     V     +  +     L A ++ +      +    L +         
Sbjct: 61  TKDAARFVNSTIDRVPQISQDYTDFSTGSLKATNNPLDFAMTREDTFYLVQ-----TKNG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 ELRLTKDGNFQLDDEGYLVNKQGY 139


>gi|238755326|ref|ZP_04616669.1| Flagellar basal-body rod protein flgC [Yersinia ruckeri ATCC
          29473]
 gi|238706462|gb|EEP98836.1| Flagellar basal-body rod protein flgC [Yersinia ruckeri ATCC
          29473]
 gi|253317693|gb|ACT22782.1| flagellar basal body rod protein FlgC [Yersinia ruckeri]
          Length = 134

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NAD+        Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQVANQGAQETG 60

Query: 55 QRSENKNMFDKV 66
               + + D  
Sbjct: 61 GVRVAQIVEDTS 72


>gi|289548424|ref|YP_003473412.1| flagellar basal-body rod protein FlgC [Thermocrinis albus DSM
          14484]
 gi|289182041|gb|ADC89285.1| flagellar basal-body rod protein FlgC [Thermocrinis albus DSM
          14484]
          Length = 137

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIEN--ADN-KN--YVRRDTMTTI--SPEN---- 49
          M +  VF  + +       +   I  N+ N  +   +   Y R + +     +P N    
Sbjct: 2  MEVFKVFEVSASGMYAQRVRINVIASNLANYESYTREGEPYRRLEPVFEAVETPGNLSKG 61

Query: 50 ---VTVVTQRSENKNM 62
             V VV  R  +   
Sbjct: 62 LVPVRVVEIRRSDAPF 77


>gi|262404542|ref|ZP_06081097.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC586]
 gi|262349574|gb|EEY98712.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC586]
          Length = 138

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL +VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFSVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|91776310|ref|YP_546066.1| flagellar basal-body rod FlgF [Methylobacillus flagellatus KT]
 gi|91710297|gb|ABE50225.1| Flagellar basal-body rod FlgF [Methylobacillus flagellatus KT]
          Length = 246

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/129 (8%), Positives = 33/129 (25%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A     +  +Q ++   N+ NA    +       R   + +        V   
Sbjct: 1   MDRLIYTAMTGLKHIMEQQSTTANNLANATTTGFRAQIDSFRAVPVLSDGLPTRAFVVDA 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +   N    V++     +      Q + A++                    + +     +
Sbjct: 61  TVGTNFNSGVINTTGRELDLAIRDQGWFAVQ------RPDGTEAYTRNGNFKLNENGVLQ 114

Query: 117 NLSEDILGK 125
                ++  
Sbjct: 115 TQDGMMVLG 123


>gi|83647175|ref|YP_435610.1| flagellar basal body rod protein FlgC [Hahella chejuensis KCTC
          2396]
 gi|83635218|gb|ABC31185.1| flagellar basal-body rod protein FlgC [Hahella chejuensis KCTC
          2396]
          Length = 145

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          M++ ++F+ A +     S +  +   N+ NAD 
Sbjct: 1  MAINSIFDIAGSGMTAQSVRLNTTASNLANADT 33


>gi|87124836|ref|ZP_01080684.1| hypothetical protein RS9917_01402 [Synechococcus sp. RS9917]
 gi|86167715|gb|EAQ68974.1| hypothetical protein RS9917_01402 [Synechococcus sp. RS9917]
          Length = 28178

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/435 (9%), Positives = 95/435 (21%), Gaps = 9/435 (2%)

Query: 9     KAQNICNNASQQFASIVRNIE--NADNKN---YVRRDTMTTISPENVTVVTQRSENKNMF 63
              A     NA         NI   +        Y     + T S    +      +   + 
Sbjct: 18840 NATAGLTNALASLTITGDNITLRDVTTTGDQTYTASGVIDTNSTYTSSGGAITFDGDTVI 18899

Query: 64    DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
             +  L   ++  G              + ++    N+ T          +    + ++  L
Sbjct: 18900 NSALTIDTTNGGSAANG-GAVTFSGSLDSEATEANTLTLTAGTGNIDFDGAVGSATDGAL 18958

Query: 124   GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
             G   I +A ++  + + +A    +             ++    L+              +
Sbjct: 18959 GAVTIHSAGDLTADQSITAASFTQNAGTLTTFRGDITTSTASGLNLTATTIALDGLTIDA 19018

Query: 184   KHDAHDFLDQRDVLLQKISEIIGIS--TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                        +  L     I   S         +     S+  TL       I F    
Sbjct: 19019 SSGNGVVRFGGNTRLDDAVTISRGSGAVTFSGTLNSADAESNALTLNGAGGGSITFSGAV 19078

Query: 242   SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                 T+ +  I    +  +++   A  K    A +Q                   +  S 
Sbjct: 19079 GTAGTNNAGRIGALTIDSATDVTVADDKAFYAASIQQLAGSGTTTFGGTVNTNGQIDPSG 19138

Query: 302   SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
             +  +    +       F           +    S  + +N     +     D        
Sbjct: 19139 TTPNTNGIDLTGTNFTFKDTVTTTGSGAVAIVNSGLLTINSGAAFSLDGAFDQSGTGSIR 19198

Query: 362   LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             L      A    +      +  +            ++T       S    E     +   
Sbjct: 19199 LGAGITTA-DSAITFADAVTLTQGVSLSTGTSGAGDITFSSALDASTAGTETLTLTAGTG 19257

Query: 422   HMKSQVVFNHISESY 436
              +    V        
Sbjct: 19258 AITFSDVVGATRLGA 19272


>gi|148256779|ref|YP_001241364.1| flagellar basal body rod protein FlgC [Bradyrhizobium sp. BTAi1]
 gi|146408952|gb|ABQ37458.1| flagellar basal-body rod protein FlgC (cell-proximal rod protein)
          [Bradyrhizobium sp. BTAi1]
          Length = 141

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
            + A +     + +   I  NI NAD+         Y R+    + +
Sbjct: 11 SMSIATSGLRAQAGRMRVISENIANADSTAAKAGGDPYRRKVPTFSSA 58


>gi|222824020|ref|YP_002575594.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100]
 gi|222539242|gb|ACM64343.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100]
          Length = 269

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/251 (8%), Positives = 62/251 (24%), Gaps = 20/251 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   + +A         +   +  N+ N +   Y R + +             +   K  
Sbjct: 1   MQNGYYQATGAMVTQFNRLDVVTNNLANVNTSGYKRDNVVIADF---------KRIFKET 51

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D++   + +    + +  + + + +             H  +         + N  +  
Sbjct: 52  QDELPIQNHTRDAARFVNTTIDRVPQ-----------VNHVYTNFSVGSMKMTHNPLDLA 100

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L +       +         ++      +    +  +   +          ND I+   +
Sbjct: 101 LTREDTFYLIKTNNGEIRLTQDGNFQLDEEGYLVNRQGYRVLSSDYFNNPENDGIRIGNS 160

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +     D         Q I+ +         +            L +      +      
Sbjct: 161 TSFINVDKNGIVSASNQNIARLFVAQVDDLRDLQKDGDNMYKVDLNKVRDLPNSNAIRQG 220

Query: 243 YTVTSESNPIF 253
           +T  S  NP+ 
Sbjct: 221 FTQGSNVNPVT 231


>gi|307188101|gb|EFN72933.1| Tyrosine-protein phosphatase non-receptor type 23 [Camponotus
            floridanus]
          Length = 1887

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/407 (10%), Positives = 93/407 (22%), Gaps = 19/407 (4%)

Query: 64   DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
            D   +  + A+G QR L + +       +      +   Y+     +   Y  N +E   
Sbjct: 1019 DISHNGQNIAVGSQRTLSTKDNTLTQNYSLPQSGQAEVTYLQNYHPNTTYY--NPTELQT 1076

Query: 124  GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL-RRFLSELTVVNDAIKFKTA 182
             +    +          +     ++ + +++ I    S         L + N      + 
Sbjct: 1077 QRVPYTHGTYDTTVVPPTQYVQSQLPSTSNQSIHSVTSTSENSASYPLNLHNINSAQYSQ 1136

Query: 183  SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
                     +  D      S  + ++      +    Y              I  +  N+
Sbjct: 1137 QTSTEQSKQNYADKTYAAYSTQVQMNAPTNYPSTYQTYQHGTAGASYQQQNMIPGDTSNA 1196

Query: 243  YTV-TSESNPIFIDGVVVSSNQGSAVP----------KGKIKALLQIRDSVVPIFQNQLD 291
            Y    + SN   I     S+   S              G ++    I+       QN   
Sbjct: 1197 YAYLNNSSNSEIIQSHAKSTTVQSYSQSYQYSQQVPYSGYVQYPNNIQSQNYNYMQNAHG 1256

Query: 292  EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                    + S          +                       T       +   +  
Sbjct: 1257 TNTVAYTYNPSANQAQGYAYASNLQSTQTSQASQEAIVSTTSSDITANNVHYQQQETNAR 1316

Query: 352  RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
                S +        +            D++        + G        E   N     
Sbjct: 1317 YTNASNNALVSQTQSSQYSQAYQSQTETDTYYTTPYGLQMQGQTGTAARPESYNN-YNQT 1375

Query: 412  EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL-IKVEQS 457
                 ++      S       ++S      V+L   L+ L I +  +
Sbjct: 1376 YMQAVNNGTNTTTSANPMKLTTKSEEEKSNVDL---LADLDITINHA 1419


>gi|188997545|ref|YP_001931796.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|188932612|gb|ACD67242.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium sp.
          YO3AOP1]
          Length = 136

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD---NKN---YVRRDTMTTIS 46
          L      + +       +      N+ N +    +N   Y R+  +    
Sbjct: 2  LFKGLEISVSGMQAERVRIDLAASNLANVNSTHTENGQPYRRKVPVFEAV 51


>gi|71280491|ref|YP_268220.1| flagellar basal-body rod protein FlgC [Colwellia psychrerythraea
          34H]
 gi|71146231|gb|AAZ26704.1| flagellar basal-body rod protein FlgC [Colwellia psychrerythraea
          34H]
          Length = 143

 Score = 42.3 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  VF+   +  +  S +  +   NI NAD
Sbjct: 1  MSLFNVFDITGSGMSAQSVRLNTTASNIANAD 32


>gi|171059414|ref|YP_001791763.1| flagellar basal-body rod protein FlgC [Leptothrix cholodnii SP-6]
 gi|170776859|gb|ACB34998.1| flagellar basal-body rod protein FlgC [Leptothrix cholodnii SP-6]
          Length = 136

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MS+L +FN A +  +  SQ+  ++  N+ NAD         +  R  M            
Sbjct: 1  MSMLNIFNVAGSAVSAQSQRLNAVATNLANADTVAGPDGQSFKARQVMFQSVQMGEMGAA 60

Query: 55 QRSENKNMFDKV 66
              ++   D+ 
Sbjct: 61 GVKVSQITEDQS 72


>gi|149375036|ref|ZP_01892809.1| flagellar basal-body rod protein C [Marinobacter algicola DG893]
 gi|149360925|gb|EDM49376.1| flagellar basal-body rod protein C [Marinobacter algicola DG893]
          Length = 149

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MSL  +F+ A +     S +  +   NI NA+ 
Sbjct: 1  MSLGNIFDIAGSGMTAQSLRLNTTASNIANAET 33


>gi|253682065|ref|ZP_04862862.1| flagellar basal-body rod protein FlgC [Clostridium botulinum D
          str. 1873]
 gi|253561777|gb|EES91229.1| flagellar basal-body rod protein FlgC [Clostridium botulinum D
          str. 1873]
          Length = 145

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 8/54 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-------YVRRDTMTTIS 46
          M+  +    + +  +    +  +I  NI N             Y R+  +   +
Sbjct: 1  MNAFSSLRISASGLSAERLRMDTISSNITNFKTTRGKDGNKEPYRRKIAVFQEN 54



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E++ +I   ++Y  +   I  +  M    LE  +
Sbjct: 106 NVNILNEMADMIAATRAYEANVTAINSSKSMFMKALEIGR 145


>gi|229069323|ref|ZP_04202613.1| Flagellar basal-body rod protein flgG [Bacillus cereus F65185]
 gi|229078954|ref|ZP_04211506.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock4-2]
 gi|228704368|gb|EEL56802.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock4-2]
 gi|228713810|gb|EEL65695.1| Flagellar basal-body rod protein flgG [Bacillus cereus F65185]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIGRLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNVANLPNGTGIVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 194 AEGNVANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 249


>gi|332994161|gb|AEF04216.1| flagellar basal-body rod protein FlgF [Alteromonas sp. SN2]
          Length = 247

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         VN  +E+  +I +++ Y +  K++   D++
Sbjct: 197 VMSGMLEGSNVNAVDEMVNMISLQRHYELQVKMMKQADEL 236



 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/166 (7%), Positives = 35/166 (21%), Gaps = 8/166 (4%)

Query: 3   LLAVFNKAQNICNNASQQFAS--IVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           +  +   A +    +     +     N+ NA    + R       S              
Sbjct: 1   MDKLLYIAASG--ASQDLLGTGLRANNLANAQTTGF-RAQLEQARSMPAYGEGLPSRVFS 57

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
                  +  S  + Q           +   A    N           +   +    ++ 
Sbjct: 58  MTESPSNNYESGPMIQTGRDLDVAIQGDGWFAVQDDNGQEAYSRDGNFKLGDDGILTDVH 117

Query: 120 EDILGKT--VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              +      I     +          +   +  A + +  ++  L
Sbjct: 118 NRPVLGDNGPIFLPVPLDNLDIGMDGTLSMRQLGAPENVIEDVGRL 163


>gi|307637047|gb|ADN79497.1| flagellar basal-body rod protein [Helicobacter pylori 908]
 gi|325995639|gb|ADZ51044.1| Flagellar basal-body rod protein [Helicobacter pylori 2018]
 gi|325997235|gb|ADZ49443.1| Flagellar basal-body rod protein [Helicobacter pylori 2017]
          Length = 269

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 42/194 (21%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                +  
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFL---------RLYQEY 51

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + L          + L        ++S      +     +     +       L+   
Sbjct: 52  -REQLPLEDQTKASAKYLNRNLNRVPILSEIYTDRS-----LGAFEGTNNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEIEVDQN 165

Query: 183 SKHDAHDFLDQRDV 196
                 D   Q   
Sbjct: 166 GGITFRDNEAQIQA 179


>gi|89068702|ref|ZP_01156088.1| flagellar basal body rod protein [Oceanicola granulosus HTCC2516]
 gi|89045665|gb|EAR51727.1| flagellar basal body rod protein [Oceanicola granulosus HTCC2516]
          Length = 136

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 13/74 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMT------TISPEN 49
          L ++ + A +  +   Q+   +  N+ NAD          Y R+                
Sbjct: 4  LKSITSIAASGMHAQGQRLRIVAENVANADSRGTTPGADPYRRKTVSFEEMIDRESGAAL 63

Query: 50 VTVVTQRSENKNMF 63
          V V     +  +  
Sbjct: 64 VKVGEIGRDTTDFT 77


>gi|315186392|gb|EFU20152.1| flagellar basal-body rod protein FlgB [Spirochaeta thermophila
          DSM 6578]
          Length = 138

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTIS 46
            I  NI NAD  N+ R +     S
Sbjct: 26 QIIANNIANADTPNFKRSELNFESS 50


>gi|229144385|ref|ZP_04272790.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST24]
 gi|228639016|gb|EEK95441.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST24]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIGRLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 194 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 249


>gi|78777302|ref|YP_393617.1| flagellar basal body rod protein [Sulfurimonas denitrificans DSM
          1251]
 gi|78497842|gb|ABB44382.1| Flagellar basal body rod protein [Sulfurimonas denitrificans DSM
          1251]
          Length = 276

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 3/35 (8%), Positives = 12/35 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          + + +  +         +  +I  N+ N +   + 
Sbjct: 1  MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFK 35


>gi|229011065|ref|ZP_04168259.1| Flagellar basal-body rod protein flgG [Bacillus mycoides DSM 2048]
 gi|228750237|gb|EEM00069.1| Flagellar basal-body rod protein flgG [Bacillus mycoides DSM 2048]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 48/230 (20%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q       N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSATNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           +           
Sbjct: 62  VDYAVVPAATHVNLVQGNVQMTNSATDF--FLDDGAAGTSSFFVTSKNDERFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDVET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNVADLPNGTGAVRNHMLENSNVDMTKEMADLMT 229



 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 203 NGTGAVRNHMLENSNVDMTKEMADLMTNQKMIQASQRIMTSFDKIYE 249


>gi|161367438|ref|YP_868965.2| flagellar basal body rod protein FlgF [Shewanella sp. ANA-3]
          Length = 247

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 30/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R                  + + 
Sbjct: 5   LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMVETPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     + +    +        + A++          +        L         N   
Sbjct: 65  NFRSGPIKSTGRDLDVAIKGDGWFAVQ------AQDGSEAYTRSGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     T ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVTISQ 141



 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 197 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|531462|gb|AAA67880.1| orfG [Bacillus subtilis subsp. subtilis str. 168]
          Length = 135

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A    N   QQ  +I  N+ N++   Y  +DT  +  
Sbjct: 1  MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSEL 44


>gi|261885051|ref|ZP_06009090.1| hypothetical protein CfetvA_07580 [Campylobacter fetus subsp.
          venerealis str. Azul-94]
          Length = 58

 Score = 42.3 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 12/40 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42
          ++  +    +   + +     I  +I N +   Y      
Sbjct: 1  MMIGYYNGISGIKSGNIGIDVISNDISNINTVGYKSSTAE 40


>gi|256830790|ref|YP_003159518.1| flagellar basal-body rod protein FlgC [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579966|gb|ACU91102.1| flagellar basal-body rod protein FlgC [Desulfomicrobium baculatum
           DSM 4028]
          Length = 145

 Score = 42.3 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           N+ EE++ ++   ++Y  +   I  +  M    LE  +
Sbjct: 108 NVVEEMTNMLSAMRAYEANVSTITTSKSMFSKALEIGR 145



 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          M  +   +   +           I  N+ NA          Y R++ +   +
Sbjct: 1  MDFMTAIDVGASALKAERTHLNVISMNLANAKTTRTVDGGPYRRKEVVFKET 52


>gi|317010632|gb|ADU84379.1| flagellar basal-body rod protein [Helicobacter pylori SouthAfrica7]
          Length = 269

 Score = 42.3 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/188 (9%), Positives = 37/188 (19%), Gaps = 16/188 (8%)

Query: 10  AQNICNNAS-QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
           A          +      N+ N +   + R DT+T                     +   
Sbjct: 7   AVAGAMATQFNRLDLTSNNLANLNTNGFKRDDTITGDFLR--------------LYQQYR 52

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
                  Q +    +     +              +    ++       L+   L   + 
Sbjct: 53  EQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQ 111

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
            N           + +        +    L  S L      + + N  I+          
Sbjct: 112 TNEGIAYTRDGHFSVDKDGFLVTLNGFKVLSRSGLNEQGGIMLMPNAEIEVDQNGGITFR 171

Query: 189 DFLDQRDV 196
           D       
Sbjct: 172 DNEAPIQA 179


>gi|254779049|ref|YP_003057154.1| Flagellar basal-body rod protein FlgG (Distal rod protein)
           [Helicobacter pylori B38]
 gi|254000960|emb|CAX28904.1| Flagellar basal-body rod protein FlgG (Distal rod protein)
           [Helicobacter pylori B38]
          Length = 269

 Score = 42.3 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 47/223 (21%), Gaps = 15/223 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +     +       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + +  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPDAEIEVDQN 165

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
                 D   Q       +        + +   ++ +Y  +G 
Sbjct: 166 GGITFRDNEAQIQAGALALVSFSEPKNLKKIGQNLYIYQGEGV 208


>gi|229172418|ref|ZP_04299977.1| Flagellar basal-body rod protein flgG [Bacillus cereus MM3]
 gi|228610889|gb|EEK68152.1| Flagellar basal-body rod protein flgG [Bacillus cereus MM3]
          Length = 257

 Score = 42.3 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NNRLVQRENKSFTLAEGNIADLPNGVGTVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGVGTVKNHMLENSNVDMTKEMADLMTDQKMISASQRVMTSFDKIYE 249


>gi|258511108|ref|YP_003184542.1| flagellar basal-body rod protein FlgB [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477834|gb|ACV58153.1| flagellar basal-body rod protein FlgB [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 134

 Score = 42.3 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV 53
          M++  +   A    + ++ + A    NI NA+   Y R+D       +N    
Sbjct: 1  MTVFELLQNA---LDASTLRQAVYANNIANAETPGYKRQDVAFETLLQNALSG 50


>gi|331269312|ref|YP_004395804.1| flagellar basal-body rod protein FlgC [Clostridium botulinum
          BKT015925]
 gi|329125862|gb|AEB75807.1| flagellar basal-body rod protein FlgC [Clostridium botulinum
          BKT015925]
          Length = 145

 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 8/54 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-------YVRRDTMTTIS 46
          M+  +    + +  +    +  +I  NI N             Y R+  +   +
Sbjct: 1  MNAFSSLRISASGLSAERLRMDTISSNITNFKTTRGKDGQKEPYRRKIAVFQEN 54



 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN+  E++ +I   ++Y  +   I  +  M    LE  +
Sbjct: 106 NVNILNEMADMIAATRAYEANVTAINSSKNMFMKALEIGR 145


>gi|332669188|ref|YP_004452196.1| flagellar basal-body rod protein FlgC [Cellulomonas fimi ATCC
          484]
 gi|332338226|gb|AEE44809.1| flagellar basal-body rod protein FlgC [Cellulomonas fimi ATCC
          484]
          Length = 132

 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 4/34 (11%), Positives = 10/34 (29%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M++      A        +   ++  N+ N    
Sbjct: 1  MTIFGAIGIASTGLTVHRKWLDAVSDNLSNLSTV 34



 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 3/38 (7%), Positives = 17/38 (44%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           ++  +++ L+  ++ Y  +  ++    +     L+  +
Sbjct: 94  DMSSQMTQLMMAQRGYQANAAVVDRARETYNAALQIGR 131


>gi|52143687|ref|YP_083142.1| flagellar basal body rod protein FlgG [Bacillus cereus E33L]
 gi|51977156|gb|AAU18706.1| flagellar basal-body rod protein [Bacillus cereus E33L]
          Length = 257

 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 52/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NNRLVQRENKSFTLAEGNIDDLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 62/236 (26%), Gaps = 8/236 (3%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               +   T+      +   V           G +  +  +  +VVP   +       + 
Sbjct: 22  SNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNIQ 81

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + + +    +   +      F+     +         +       Q  S    + +    
Sbjct: 82  MTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMGENNER 141

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            +        +     L +    +         V     N  +    ++           
Sbjct: 142 IRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLVQRENKSF-----TLAEG 196

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           + D       +   +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 197 NIDDLPNGTGL---VKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|225159033|ref|ZP_03725343.1| flagellar basal-body rod protein FlgC [Opitutaceae bacterium
          TAV2]
 gi|224802412|gb|EEG20674.1| flagellar basal-body rod protein FlgC [Opitutaceae bacterium
          TAV2]
          Length = 140

 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTI 45
          M+LL+      +  N    +   I +NI NA          Y R+      
Sbjct: 1  MNLLSGIGPTSSALNAQKTRLDIIAQNIANAHTTRGPNGLPYQRQMVSFES 51



 Score = 36.5 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  + +    ++       +           VNL  E+  LI   ++Y  + +++  
Sbjct: 70  VSSVSGDTTAGQRVYDPQHPDADA--SGMVTMPNVNLAYEMVDLITASRTYEANLQVVKN 127

Query: 468 TDKM 471
           + +M
Sbjct: 128 SRQM 131


>gi|146296277|ref|YP_001180048.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145409853|gb|ABP66857.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 137

 Score = 41.9 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
            I  NI NAD   Y  +D       +   +  Q +      DK       + G      
Sbjct: 23 EVISNNIANADTPGYKAKDLNFKAFLQ-AYLNDQNNLELITTDKRHIKAEQSSGTSTKDS 81

Query: 82 SFEALKEMMSADDHYNN 98
          + E L          N 
Sbjct: 82 AIEILDSSFQMRLDENT 98


>gi|242238967|ref|YP_002987148.1| flagellar basal-body rod protein FlgC [Dickeya dadantii Ech703]
 gi|242131024|gb|ACS85326.1| flagellar basal-body rod protein FlgC [Dickeya dadantii Ech703]
          Length = 134

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSL ++F  + +     SQ+      N+ NA          Y  +  +  ++      + 
Sbjct: 1  MSLTSIFEISGSALTAQSQRMNVSASNLANADSVTGPDGQPYRAKQVVFKLAATEGQEIG 60

Query: 55 QRSENKNMFD 64
              +  + D
Sbjct: 61 GVRVDDVVED 70



 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V++  E+   I   +SY  + +++     ++Q  L
Sbjct: 95  NVDVAAEMVNSISASRSYQANVEVLNTAKTLMQKTL 130


>gi|237751806|ref|ZP_04582286.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879]
 gi|229373172|gb|EEO23563.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879]
          Length = 285

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 40/190 (21%), Gaps = 19/190 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV--------VT 54
           +   +  A         +   I  N+ N +   + R D +       V            
Sbjct: 1   MQTGYYGATGGMITQFNRLDVISNNLANLNTNGFKRDDVVIGDFLRMVQGHQDTLPIPDE 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM-----------MSADDHYNNSPTHY 103
            ++  K +   +    + A              E              A    N      
Sbjct: 61  TKAAAKFINRTMTRVPTIAEEYTDFSVGAMEQTENTLDFALKAPNTFFAVQTPNGIAYTR 120

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                 S + Y        +      + E  +         V      + KE+  E    
Sbjct: 121 NGSFSISDDGYLVTQEGFHVLSRDGIDNEGGILMNANMQINVDTNGNVSFKELGNEGMAD 180

Query: 164 RRFLSELTVV 173
                 L +V
Sbjct: 181 NIAGGSLAIV 190


>gi|15611401|ref|NP_223052.1| flagellar basal-body rod protein [Helicobacter pylori J99]
 gi|4154843|gb|AAD05896.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
          Length = 269

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 42/194 (21%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                +  
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFL---------RLYQEY 51

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             + L          + L        ++S      +     +     +       L+   
Sbjct: 52  -REQLPLEDQTKASAKYLNRNLNRVPILSEIYTDRS-----LGAFEGTNNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEIEVDQN 165

Query: 183 SKHDAHDFLDQRDV 196
                 D   Q   
Sbjct: 166 GGITFRDNEAQIQA 179


>gi|269103189|ref|ZP_06155886.1| flagellar basal-body rod protein FlgF [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163087|gb|EEZ41583.1| flagellar basal-body rod protein FlgF [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 249

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 27/133 (20%), Gaps = 18/133 (13%)

Query: 3   LLAVFNKAQNICNNAS--QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           +      A N                N+ N     + R D     S +            
Sbjct: 1   MDRALYLAMNG--AQQDMLGLQVRANNLANVSTTGF-RADLEQARSMQAYGEGVPDRVFT 57

Query: 61  -------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                  N     +      +        + A+++         N        L+     
Sbjct: 58  MAERPGYNFTQGSVITTGRDLDVAVEGDGWLAVQDA------SGNEAYTRAGHLKIDQTG 111

Query: 114 YSKNLSEDILGKT 126
             +N +  ++   
Sbjct: 112 MLQNSNGQLVLGQ 124



 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         VN   E++ LI +++ + +  KL+   ++M
Sbjct: 199 LLNGTLEGSNVNAVGEMTALIDLQRHFEMQVKLMKTAEEM 238


>gi|30019815|ref|NP_831446.1| flagellar basal body rod protein FlgG [Bacillus cereus ATCC 14579]
 gi|218235496|ref|YP_002366457.1| flagellar basal body rod protein FlgG [Bacillus cereus B4264]
 gi|218896706|ref|YP_002445117.1| putative flagellar basal-body rod protein [Bacillus cereus G9842]
 gi|228907405|ref|ZP_04071263.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL
           200]
 gi|228952155|ref|ZP_04114247.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228958053|ref|ZP_04119788.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043528|ref|ZP_04191237.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH676]
 gi|229109228|ref|ZP_04238827.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-15]
 gi|229127099|ref|ZP_04256096.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-Cer4]
 gi|229149977|ref|ZP_04278203.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1550]
 gi|29895360|gb|AAP08647.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 14579]
 gi|218163453|gb|ACK63445.1| putative flagellar basal-body rod protein [Bacillus cereus B4264]
 gi|218540813|gb|ACK93207.1| putative flagellar basal-body rod protein [Bacillus cereus G9842]
 gi|228633499|gb|EEK90102.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1550]
 gi|228656215|gb|EEL12056.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-Cer4]
 gi|228674238|gb|EEL29483.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-15]
 gi|228725750|gb|EEL76998.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH676]
 gi|228801570|gb|EEM48452.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807509|gb|EEM54036.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228852266|gb|EEM97062.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL
           200]
          Length = 257

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 194 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 249


>gi|328543166|ref|YP_004303275.1| flagellar basal-body rod protein C [polymorphum gilvum
          SL003B-26A1]
 gi|326412912|gb|ADZ69975.1| Flagellar basal-body rod protein C [Polymorphum gilvum
          SL003B-26A1]
          Length = 136

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT 43
          M L+     + +     + +   I  N+ NAD+         Y R+    
Sbjct: 1  MDLVKSLFISASGLKAQNGRIRVIAENLANADSTGRTPDEDPYRRKIPTF 50



 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           G L ++RS+    +       +           VN   E   + + ++SY  +  +I  T
Sbjct: 66  GKLAEDRSEFPTRYEPGHPAADA--NGNVRVPNVNSLVETVDMREAQRSYEANLNVIEST 123

Query: 469 DKMLQTLLEGVK 480
            +MLQ  ++ ++
Sbjct: 124 RRMLQRTIDILR 135


>gi|16125206|ref|NP_419770.1| flagellar basal body rod protein FlgC [Caulobacter crescentus
          CB15]
 gi|221233942|ref|YP_002516378.1| flagellar basal body rod protein FlgC [Caulobacter crescentus
          NA1000]
 gi|13422230|gb|AAK22938.1| flagellar basal-body rod protein FlgC [Caulobacter crescentus
          CB15]
 gi|220963114|gb|ACL94470.1| flagellar basal-body rod protein flgC [Caulobacter crescentus
          NA1000]
          Length = 139

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 8/64 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTT-ISPENVTVVTQ 55
          LA    A +       +   I  NI NA           Y R+  +    + +    V  
Sbjct: 9  LATMAVASSALRAQQGRMRVIAENIANAHSTARTAGGDPYRRQVPVFKPTTVQGGEGVQM 68

Query: 56 RSEN 59
             +
Sbjct: 69 LRVD 72


>gi|312621565|ref|YP_004023178.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202032|gb|ADQ45359.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 133

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 9/23 (39%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           I  NI NAD   Y  +D     
Sbjct: 24 IISNNIANADTPGYKAKDLNFEA 46


>gi|251799753|ref|YP_003014484.1| flagellar basal body rod protein [Paenibacillus sp. JDR-2]
 gi|247547379|gb|ACT04398.1| flagellar basal body rod protein [Paenibacillus sp. JDR-2]
          Length = 288

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 53/208 (25%), Gaps = 5/208 (2%)

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
            ++  ++   ++    +   +       D           +                I  
Sbjct: 78  HLQGDLMQTGKSSDFALVSNIDVPGMAFDASGKYVSPDGDVTFQPQAFFTLQDKNGEIRY 137

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
           T   +    S+   +   GS       N         L      +  +       A    
Sbjct: 138 TRGGSFTLTSDGFLVAGDGSNVLGADGNPIQFPQGVSLDGLTLTADQRFVDAKTGADSGR 197

Query: 397 NV--TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH---ISESYSNTVGVNLQEELSFL 451
            +  T ++         +     + D      VV      + + Y     V+  +    L
Sbjct: 198 QLLLTRIDNPNELAREGDGKFRLAGDAQDARPVVAGERVEVRQGYVERSNVDAAQSSVDL 257

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           +   ++Y  + K+I F D+ L   +  V
Sbjct: 258 MAALRAYEANQKVIQFYDESLDKAVNQV 285


>gi|182680550|ref|YP_001834696.1| flagellar basal body rod protein FlgC [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182636433|gb|ACB97207.1| flagellar basal-body rod protein FlgC [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 138

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          L A    A +     S +   I  N+ N+++         Y R+    + 
Sbjct: 5  LKASMKIAGSGLEAQSTRLRVISENMANSESTGTTAGANPYQRKTVTFSS 54


>gi|75762829|ref|ZP_00742649.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228900355|ref|ZP_04064584.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL
           4222]
 gi|74489683|gb|EAO53079.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228859242|gb|EEN03673.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL
           4222]
          Length = 259

 Score = 41.9 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 54/234 (23%), Gaps = 19/234 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTT 44
           M++            N  Q+      N+ NA    +                 R D   T
Sbjct: 1   MNMNG-LYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVT 59

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                   V   + + N+    +   +SA      L    A           + +     
Sbjct: 60  NIGSVDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRD 117

Query: 105 SKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR 164
                + + Y +  S   +     +              +           I    +   
Sbjct: 118 GSFTLNSDRYLQTSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTV 177

Query: 165 RFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +   +V    K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 178 DAETNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 231



 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 196 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 251


>gi|57505520|ref|ZP_00371447.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
 gi|57016067|gb|EAL52854.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis
           RM3195]
          Length = 270

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 30/144 (20%), Gaps = 30/144 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------- 45
           +   + +A         +   I  N+ N +   Y R D +                    
Sbjct: 1   MQNGYYQATGGMVTQFNKLEVITNNLANINTSGYKRDDVVIADFKRIFKETKDELPIENH 60

Query: 46  --------SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                   +     V     +  +     L A ++ +      +    L +         
Sbjct: 61  TKDAARFVNSTIDRVPQISQDYTDFSTGSLKATNNPLDFAMTREDTFYLVQ-----TKNG 115

Query: 98  NSPTHYISKLRDSLESYSKNLSED 121
                     +   E Y  N    
Sbjct: 116 ELRLTKDGNFQLDDEGYLVNKQGY 139


>gi|117923583|ref|YP_864200.1| flagellar basal-body rod protein FlgC [Magnetococcus sp. MC-1]
 gi|117607339|gb|ABK42794.1| flagellar basal-body rod protein FlgC [Magnetococcus sp. MC-1]
          Length = 141

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M  L  F    +       +   I  N+ NA      +   Y RRD +    P
Sbjct: 1  MDFLTSFKVTASGLAAQRLRMNIISENVANAQTTRTPEGGPYKRRDPVFMSRP 53


>gi|304438314|ref|ZP_07398255.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368680|gb|EFM22364.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 266

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 39/181 (21%), Gaps = 6/181 (3%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD-GGS 356
           +   +                     +                   YRS+   L++  G 
Sbjct: 85  VDEIATDHIQGALQTTGNTYDFGISGQGYFIIDTPQGQRYTRDGSFYRSSTGQLQNVRGQ 144

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                      +      +    D                 +  +++        E +  
Sbjct: 145 AVLSPQGQPITIPADARNVTVSSDGR-----IYANGRQIAQLGFVQFDEEKAVIKEGDNL 199

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                  + Q     I +        ++  E+  LI   + Y   +K +   D +L   +
Sbjct: 200 YKPQPGAQPQQATGVIEQGMLEMSNTSVVTEMVELINNYRVYEAGSKAVQTQDALLDKAV 259

Query: 477 E 477
            
Sbjct: 260 N 260



 Score = 40.0 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR 38
          +      A +     ++    I  N+ NA    Y R
Sbjct: 1  MWRGLYIAASGMITETKHTDMIANNLANAATTGYKR 36


>gi|289208112|ref|YP_003460178.1| flagellar basal-body rod protein FlgC [Thioalkalivibrio sp.
          K90mix]
 gi|288943743|gb|ADC71442.1| flagellar basal-body rod protein FlgC [Thioalkalivibrio sp.
          K90mix]
          Length = 139

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46
          MS L  +FN + +     S +  ++  N+ NA+       + Y  +  +    
Sbjct: 1  MSDLFNLFNTSASALTAQSVRLNTVASNLANANTVATNPDEAYRAKQVLFQTV 53


>gi|327478810|gb|AEA82120.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri DSM
           4166]
          Length = 234

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/182 (7%), Positives = 41/182 (22%), Gaps = 10/182 (5%)

Query: 14  CNNASQ---QFASIVRNIENADNKNYV----RRDTMTTISPE--NVTVVTQRSENKNMFD 64
              AS+          N+ N +   +     R   +        +  +    +   ++  
Sbjct: 1   MTAASRTMMSLQVRSNNLANVNTPGFRADLERAQAVAVEGYGYDSRHMALIENNGVSLAA 60

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
             + A    +           L++          S           L   +       + 
Sbjct: 61  GPMVATGRELDFAVKGNGLIVLEDGEGEAYTRQGSMQVDAEGRLT-LNGRAVLGEGGPIV 119

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
               D  E       +       + A+ D+   +++       ++  ++           
Sbjct: 120 LPEYDRMEIGNDGTVSIMAPGDWMMAEVDRIRLVDVPAANLMKNQAGLLVTRDGEPAQPS 179

Query: 185 HD 186
            D
Sbjct: 180 ED 181


>gi|153213630|ref|ZP_01948903.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 1587]
 gi|153825350|ref|ZP_01978017.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-2]
 gi|153829337|ref|ZP_01982004.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 623-39]
 gi|183179563|ref|ZP_02957774.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-3]
 gi|229513843|ref|ZP_04403305.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TMA 21]
 gi|229522148|ref|ZP_04411565.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TM
          11079-80]
 gi|229524194|ref|ZP_04413599.1| flagellar basal-body rod protein FlgC [Vibrio cholerae bv.
          albensis VL426]
 gi|229528796|ref|ZP_04418186.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 12129(1)]
 gi|254286492|ref|ZP_04961449.1| flagellar basal-body rod protein FlgC [Vibrio cholerae AM-19226]
 gi|258621047|ref|ZP_05716081.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM573]
 gi|258625275|ref|ZP_05720183.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM603]
 gi|261211324|ref|ZP_05925612.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC341]
 gi|262170823|ref|ZP_06038501.1| flagellar basal-body rod protein FlgC [Vibrio mimicus MB-451]
 gi|262191691|ref|ZP_06049867.1| flagellar basal-body rod protein FlgC [Vibrio cholerae CT
          5369-93]
 gi|297580845|ref|ZP_06942770.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC385]
 gi|124115829|gb|EAY34649.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 1587]
 gi|148875178|gb|EDL73313.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 623-39]
 gi|149741034|gb|EDM55103.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-2]
 gi|150423441|gb|EDN15385.1| flagellar basal-body rod protein FlgC [Vibrio cholerae AM-19226]
 gi|183012974|gb|EDT88274.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-3]
 gi|229332570|gb|EEN98056.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 12129(1)]
 gi|229337775|gb|EEO02792.1| flagellar basal-body rod protein FlgC [Vibrio cholerae bv.
          albensis VL426]
 gi|229341073|gb|EEO06078.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TM
          11079-80]
 gi|229349024|gb|EEO13981.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TMA 21]
 gi|258582448|gb|EEW07289.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM603]
 gi|258586435|gb|EEW11150.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM573]
 gi|260839279|gb|EEX65905.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC341]
 gi|261891899|gb|EEY37885.1| flagellar basal-body rod protein FlgC [Vibrio mimicus MB-451]
 gi|262032430|gb|EEY50992.1| flagellar basal-body rod protein FlgC [Vibrio cholerae CT
          5369-93]
 gi|297534671|gb|EFH73507.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC385]
 gi|327484718|gb|AEA79125.1| Flagellar basal-body rod protein FlgC [Vibrio cholerae LMA3894-4]
          Length = 138

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL +VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFSVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|332531616|ref|ZP_08407513.1| flagellar basal-body rod protein FlgC [Hylemonella gracilis ATCC
          19624]
 gi|332038979|gb|EGI75408.1| flagellar basal-body rod protein FlgC [Hylemonella gracilis ATCC
          19624]
          Length = 136

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISP 47
          MS+ ++F  + +  +  +Q+   +  N+ NAD         Y  R  +    P
Sbjct: 1  MSMFSIFGVSGSAISAQAQRLNVVASNLANADAVAGPDGQFYKARQVVFETLP 53



 Score = 41.2 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 10/144 (6%)

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                +     S  S      +V    L N   +AG             +   FD     
Sbjct: 1   MSMFSIFGVSGSAISAQAQRLNVVASNLANADAVAGPDGQFYKARQVVFETLPFDEATPG 60

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
              V +               S +           +  ++ Y N   VN  EE+  +I  
Sbjct: 61  AAGVKIN----------AVTESQAPARRTYEPTHPSADADGYVNQSNVNPVEEMVNMISA 110

Query: 455 EQSYNISNKLIMFTDKMLQTLLEG 478
            +SY  + +++     +L   L+ 
Sbjct: 111 SRSYQNNVEVMNTAKTLLLKTLQM 134


>gi|39995516|ref|NP_951467.1| flagellar basal-body rod protein FlgC [Geobacter sulfurreducens
          PCA]
 gi|39982279|gb|AAR33740.1| flagellar basal-body rod protein FlgC [Geobacter sulfurreducens
          PCA]
 gi|298504516|gb|ADI83239.1| flagellar basal body rod protein FlgC [Geobacter sulfurreducens
          KN400]
          Length = 146

 Score = 41.9 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPEN 49
          M   +    + +  +    +   I  N+ NA++    +   Y R+D +   +   
Sbjct: 1  MDFFSAMQVSSSALSAERTRMNLISANLANANSTRTAEGGPYKRKDAVFAATQVG 55



 Score = 36.9 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            VN+ EE++ +I   ++Y  +   +     M
Sbjct: 106 NVNVVEEMADMIAATRAYEANVTAMQAAKNM 136


>gi|117612105|gb|ABK47559.1| flagellar basal-body rod protein FlgF [Shewanella sp. ANA-3]
          Length = 252

 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 30/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R                  + + 
Sbjct: 10  LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMVETPSA 69

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     + +    +        + A++          +        L         N   
Sbjct: 70  NFRSGPIKSTGRDLDVAIKGDGWFAVQ------AQDGSEAYTRSGSLSFDSTGLLHNDRG 123

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     T ++
Sbjct: 124 NPVMGDAGPIVLPLPIEKVTISQ 146



 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 202 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 240


>gi|78358199|ref|YP_389648.1| flagellar basal-body rod protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220604|gb|ABB39953.1| flagellar basal-body rod protein, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 260

 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 63/243 (25%), Gaps = 6/243 (2%)

Query: 227 LFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIF 286
           LF  +  +     + +      +     D +       S      ++ +  +R   +   
Sbjct: 9   LFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNVRSKKMFPE 68

Query: 287 QNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS 346
              + +    L  +   +  +      +      DG   +     +  +           
Sbjct: 69  PIHIAKPRIALAKTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNGNFRQTSDG 128

Query: 347 NPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARN 406
                +    +       +   A      N    +  +      V  ++    L +   N
Sbjct: 129 QLVTQQGWPVLGAGGDIQIPPRANLTVAENGTIYADGEEIGQVQVVTLDNLDALEKQGSN 188

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
                   R  +    +  +     + + +  T  V +  E+  +I+  + +    K++ 
Sbjct: 189 LFRL----REGAEAQEVPVENPV--VLQGFLETANVEVVTEMVNMIEANRQFEAYQKIMQ 242

Query: 467 FTD 469
            TD
Sbjct: 243 TTD 245


>gi|284926121|gb|ADC28473.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 750

 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 116/388 (29%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++    +  + ++   +           D +   + D         +      +K     
Sbjct: 365 NNGDITNLNNPVTIQINGQNFEIDLKQTDFIKSKMTDTDGNAANGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            + +    T     +        +     S  +T       I          + +     
Sbjct: 485 PDPNNPGQTISFPIMHTNPATGNSGVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           +        +  + ++    +   +            +S     + ++D           
Sbjct: 545 QINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             + T+   P +  + +        +   + ++ ++       N   DS ++N     + 
Sbjct: 605 TTTSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +    ++ ++  +  ++    SN + V+  E +  L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMINL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTIISQL--SLLNYM 750


>gi|207111832|ref|ZP_03245994.1| flagellar hook-associated protein FlgK [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 27

 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 454 VEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +  Y  + K+I   D+M+ TLL   +
Sbjct: 1   FQSGYAANAKVITAIDRMIDTLLGIKQ 27


>gi|315586347|gb|ADU40728.1| flagellar basal-body rod protein [Helicobacter pylori 35A]
          Length = 269

 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 38/194 (19%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +     +       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEKTHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|157362949|ref|YP_001469716.1| flagellar basal-body rod protein FlgC [Thermotoga lettingae TMO]
 gi|157313553|gb|ABV32652.1| flagellar basal-body rod protein FlgC [Thermotoga lettingae TMO]
          Length = 137

 Score = 41.9 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 14/70 (20%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTT--------IS 46
          M+   + N + +       +   I  NI N++         Y RR  + +         +
Sbjct: 1  MNEFLIMNVSASGMTAQRLRVDIISSNIANSETTRTDRGTPYRRRVPVFSEYLISDGKSA 60

Query: 47 PENVTVVTQR 56
             V VV   
Sbjct: 61 STGVKVVRIE 70



 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y +   VN+  E+  LI  ++SY  +      T  M+ + L+  +
Sbjct: 89  ENGYVSLPNVNVLREMVDLISAQRSYEANISAFNTTKSMINSALQIGR 136


>gi|229132600|ref|ZP_04261448.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST196]
 gi|228650832|gb|EEL06819.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST196]
          Length = 257

 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 49/222 (22%), Gaps = 18/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q       N+ NA    +                 R D  TT    
Sbjct: 2   NGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGATTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           + +         
Sbjct: 62  VDYAVVPAATHVNLVQGNVQMTNSATDF--FLDDGAAGTSSFFVTSKNDETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +           I    +      +
Sbjct: 120 LNSDRYLQTASGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIGRLQTKTVDAET 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              +V    K  T ++ +  D  +   ++   + E   +   
Sbjct: 180 NARLVQRENKSFTLAEGNLADLPNGTGIVKNHMLENSNVDMT 221



 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 203 NGTGIVKNHMLENSNVDMTKEMADLMSSQKMIQASQRIMTSFDKIYE 249


>gi|302389655|ref|YP_003825476.1| flagellar basal-body rod protein FlgB [Thermosediminibacter
          oceani DSM 16646]
 gi|302200283|gb|ADL07853.1| flagellar basal-body rod protein FlgB [Thermosediminibacter
          oceani DSM 16646]
          Length = 136

 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTIS 46
            +  NI N D  N+ R D +    
Sbjct: 23 EVLANNIANVDTPNFKRSDVVFEEL 47


>gi|301168116|emb|CBW27702.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ]
          Length = 135

 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 8/61 (13%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS 71
          +  N    +   I  NI NA+   Y  +      +                  + L+   
Sbjct: 13 SSLNFRQMRQEIISSNIANAETPGYKAKRVDFEQALA--------RALDVDGQQQLNTED 64

Query: 72 S 72
          S
Sbjct: 65 S 65


>gi|258543162|ref|YP_003188595.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256634240|dbj|BAI00216.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256637300|dbj|BAI03269.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256640352|dbj|BAI06314.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256643409|dbj|BAI09364.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256646464|dbj|BAI12412.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256649517|dbj|BAI15458.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256652503|dbj|BAI18437.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655561|dbj|BAI21488.1| outer membrane protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 886

 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/447 (8%), Positives = 100/447 (22%), Gaps = 24/447 (5%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL 67
           +  +   + +    +     I N             + S + + +         + D   
Sbjct: 63  STGKRGIDTSGIAASGASVTINNTGT---------ISGSDDGIRIDDALINGTLLLDNSG 113

Query: 68  HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
              S+  GQ     S  +   +   ++      +     LR    +  KN        T 
Sbjct: 114 TIQSTDDGQAVDFNSVSSASSITIINESNGIIKSTDADALRPGANASIKNAGTIYADGTN 173

Query: 128 IDNAEEVVQNFN-----TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                + +   +      ++  +   R       ++ + N           +        
Sbjct: 174 GATKNDGIDFQDYSGTVDNSGSISGARHGITSSTDVTVVNEAGGTITGRDGSGVGSDGNG 233

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
           +  +        D       + + I       N   +  +           + +      
Sbjct: 234 TVTNYGTITGAYDNSGTGDGDGVDIDGYTTITNYGTIQGTGAGGNGSDGYPNTSEGVSIG 293

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
                  +   I G        ++       A     +  +         +      + +
Sbjct: 294 GGDIVNESGALISGAANGILVDNSSQGNAPYATTITNNGTIQGLDGYGIHITDTFGDTIT 353

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
               I+G ++ +      D +      +  G  +    N     + S   DG    +   
Sbjct: 354 NAGTISGTTDAILLGDGDDTLNIQTGSVISGTVDGGAGNNTVNLSGSGTFDGAINFQTMT 413

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
            +   +       +    + N        A     +T    A   +G             
Sbjct: 414 VSGSWILSGDQSYSTISLADNAALTLQGSAPSTETITFSGGAALILG----------TSS 463

Query: 423 MKSQVVFNHISESYSNTVGVNLQEELS 449
             +  + N    +  +   V    E +
Sbjct: 464 SFNATLSNFAVGNTLDFSTVTYDTEAT 490


>gi|161349955|ref|YP_733400.2| flagellar basal body rod protein FlgF [Shewanella sp. MR-4]
 gi|161367434|ref|YP_737389.2| flagellar basal body rod protein FlgF [Shewanella sp. MR-7]
          Length = 247

 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 30/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R          +       + + 
Sbjct: 5   LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPSRVFAMVETPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L         N   
Sbjct: 65  NFRAGPIKTTGRDLDVAIKGDGWFAVQ------AKDGSEAYTRSGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     T ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVTISQ 141



 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 197 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|261821151|ref|YP_003259257.1| flagellar basal body rod protein FlgC [Pectobacterium wasabiae
          WPP163]
 gi|261605164|gb|ACX87650.1| flagellar basal-body rod protein FlgC [Pectobacterium wasabiae
          WPP163]
          Length = 134

 Score = 41.9 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F  + +  +  SQ+      N+ NA          Y  +  +  ++        
Sbjct: 1  MSLLNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGEPYRAKQVVFEVNAAPGQSTG 60

Query: 55 QRSENKNMFD 64
                 + D
Sbjct: 61 GVRVANVIED 70


>gi|126668556|ref|ZP_01739510.1| flagellar basal-body rod protein C [Marinobacter sp. ELB17]
 gi|126626961|gb|EAZ97604.1| flagellar basal-body rod protein C [Marinobacter sp. ELB17]
          Length = 147

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MSL  +F+ A +     S +  +   NI NA+ 
Sbjct: 1  MSLGNIFDIAGSGMTAQSLRLNTTASNIANAET 33



 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ ++   +S+ ++  ++     M+Q +L
Sbjct: 107 NVNVAEEMADMMSSSRSFQMNVDIMNTAKSMMQRIL 142


>gi|238782793|ref|ZP_04626822.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC
           43970]
 gi|238716216|gb|EEQ08199.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC
           43970]
          Length = 251

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 51/200 (25%), Gaps = 3/200 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A    N A  +      N+ NA    +  + +     P N   V  R+     
Sbjct: 1   MDRAIYTAMGAANAALNRQGVTSNNLANASTTGFRAQLSAFRAVPINGPSVETRTLVTES 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  +     R L         ++ +             +    E   +     +
Sbjct: 61  TPYHDDSMGTINQTGRNLDVALPQDGWLAVELLGGGEAYTRAGNIDIDSEGLLRVNGRAV 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN---LRRFLSELTVVNDAIKF 179
           LG     N     +        +  + A  +     ++     +   L +L   +D +  
Sbjct: 121 LGDGGPINVPPQAELTIAPDGTITALGAGEEPSALAQVGRLKLVNARLQDLRHGDDGLFH 180

Query: 180 KTASKHDAHDFLDQRDVLLQ 199
              +  +A       D  LQ
Sbjct: 181 IAETSPNAGLMALPADQSLQ 200


>gi|322806996|emb|CBZ04566.1| flagellar basal-body rod protein FlgC [Clostridium botulinum
          H04402 065]
          Length = 77

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
                + +  +    +  +I  NI NA          Y R+  + 
Sbjct: 5  FDTMRISASGLSAERLRMDTIASNIANATTTRTENGGPYKRKIAVF 50


>gi|312792644|ref|YP_004025567.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312179784|gb|ADQ39954.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 133

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI NAD   Y  +D     
Sbjct: 23 EIISNNIANADTPGYKVKDLNFEA 46


>gi|268320031|ref|YP_003293687.1| hypothetical protein FI9785_1565 [Lactobacillus johnsonii FI9785]
 gi|262398406|emb|CAX67420.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 1198

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/422 (9%), Positives = 99/422 (23%), Gaps = 15/422 (3%)

Query: 40  DTMTTISPENVTVVTQRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
           D     S       + +    +  +       +++  G   L    + +        +  
Sbjct: 449 DVKFASSVTEPNGKSIKRLYVDNQLGTVNSGVNTARNGLGTLSNGSKQITNGAVQLQNGA 508

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE-VVQNFNTSAREVQKIRADADKEI 156
           N  ++   +L+      +   +    G   + +    +             ++  A +  
Sbjct: 509 NQLSNGTGRLQAGANQLASGTTRLQNGAEALRSGTMRLATGAGRLESGTLNLQQGAVQLE 568

Query: 157 ELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216
              I       S  +             +  +    Q +  +   S+ I     V ++  
Sbjct: 569 NGTIKLANGAASLQSGTQSLQAGTDQLANGLNQLNSQLNQKIPASSQQIQTMKSVVSDLQ 628

Query: 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL 276
             +   +   +      D++   +NS       N +   G  +S    +A      +A  
Sbjct: 629 KNLNDLNNE-VQSIDIPDLSGLNVNSGAGDKLRNSLNSAGTTLSQLSQNASSD---QAKQ 684

Query: 277 QIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISE 336
               ++     +  D    +          + G   +V     + G    +        +
Sbjct: 685 AYLSALKSQGFSDADAQKALAAMLPVMNQQLGGAVSSVGSDLKSAGEAGNEINQSVNALK 744

Query: 337 TICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT 396
                 Q       L    + + K        A   +       S          A  N 
Sbjct: 745 DNSALKQIAGMQQKLARLKAATAKLSSVSNGFAQQTNSQIDELTSQLNQIQTAVSASANG 804

Query: 397 NVTLLEYARNSIGWLEKNRSDSHDLHMKSQ---VVFNHISESYSN-----TVGVNLQEEL 448
              +   A        +  S        S         ++   S        G+N   +L
Sbjct: 805 ASQINSGAARLNSGAGQLASGLQAGVAGSSQLANGAGQLANGASQLNTGLQSGLNGTNQL 864

Query: 449 SF 450
           + 
Sbjct: 865 AN 866


>gi|257095361|ref|YP_003169002.1| flagellar basal-body rod protein FlgC [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257047885|gb|ACV37073.1| flagellar basal-body rod protein FlgC [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 134

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MS+L  F  A +     S +  ++  N+ NA          Y  +  +   +P       
Sbjct: 1  MSILNAFQVAGSALTAQSLRLNAVASNLANADSVVGSDGKPYRAKQVVFVATPMGSPAAE 60

Query: 55 QRSENKNMFDKV 66
               + + D  
Sbjct: 61 GVRVKQVVEDSS 72


>gi|220917700|ref|YP_002493004.1| flagellar basal-body rod protein FlgF [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219955554|gb|ACL65938.1| flagellar basal-body rod protein FlgF [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 235

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 12/43 (27%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +      +       ++Q  ++  N+ NA    +         
Sbjct: 1  MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFES 43


>gi|318604253|emb|CBY25751.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 243

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 49/208 (23%), Gaps = 3/208 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N + + + R D     + +              
Sbjct: 1   MDKLLYTAVSGANRSLTQQQIHANNLANVNTQGF-RADLERATATQVPGGSYNSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +   + ++ +             + A             ++    +         +
Sbjct: 60  QNAGVDMTAGSLQETGRELDVAIKDRGLIAVLSGGREVYTRNGQMEVGPDGDLTINGMPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELTVVNDAIKFK 180
           LG                    +  I      +   E+  ++     +     N+     
Sbjct: 120 LGDGGAIVLPAYSAVSVADDGTIAIIPQAGGIKTPAEVDRIKLVDIPANQLSKNNRGLLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIS 208
                 A D   Q      + S I  IS
Sbjct: 180 NRRGAAARDENVQLVSKHLESSNISAIS 207


>gi|195940723|ref|ZP_03086105.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4024]
          Length = 30

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           +I  +++Y  + + I   D++L TL+  VK
Sbjct: 1   MIVAQRNYQSNAQTIKTQDQILNTLVNCVK 30


>gi|88799022|ref|ZP_01114603.1| Flagellar basal body rod protein [Reinekea sp. MED297]
 gi|88778249|gb|EAR09443.1| Flagellar basal body rod protein [Reinekea sp. MED297]
          Length = 247

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 27/131 (20%), Gaps = 12/131 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +      A     N      S   N+ NA    +       R   +      +       
Sbjct: 1   MDRAIYIAMTGAKNNMMAQTSHSNNLANARTFGFKADWAQARAIPVWGEHHPSRAFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +  D  L    + +        F A+ +    +                +      
Sbjct: 61  RPASDFNDGALIETGNELDTAITGDGFFAVLDAEGQEA------YTRRGDFSVTPLGELI 114

Query: 117 NLSEDILGKTV 127
           N + + +    
Sbjct: 115 NGAGESVIGEG 125



 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +   +     VN   EL+ L+ + + Y    K++   D +
Sbjct: 196 SVVSGFVEASNVNSVHELTNLLALNRQYETQVKMMKTADDV 236


>gi|30261777|ref|NP_844154.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           Ames]
 gi|47527010|ref|YP_018359.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184611|ref|YP_027863.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           Sterne]
 gi|65319054|ref|ZP_00392013.1| COG4786: Flagellar basal body rod protein [Bacillus anthracis str.
           A2012]
 gi|167633188|ref|ZP_02391513.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0442]
 gi|167638782|ref|ZP_02397057.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0193]
 gi|170686326|ref|ZP_02877548.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0465]
 gi|170706443|ref|ZP_02896903.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0389]
 gi|177650448|ref|ZP_02933415.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0174]
 gi|228914350|ref|ZP_04077965.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229121324|ref|ZP_04250555.1| Flagellar basal-body rod protein flgG [Bacillus cereus 95/8201]
 gi|229600237|ref|YP_002866164.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0248]
 gi|254683274|ref|ZP_05147135.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723857|ref|ZP_05185643.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           A1055]
 gi|254734627|ref|ZP_05192339.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741036|ref|ZP_05198724.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           Kruger B]
 gi|254755279|ref|ZP_05207313.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           Vollum]
 gi|254759816|ref|ZP_05211840.1| flagellar basal body rod protein FlgG [Bacillus anthracis str.
           Australia 94]
 gi|30256005|gb|AAP25640.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           Ames]
 gi|47502158|gb|AAT30834.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178538|gb|AAT53914.1| flagellar basal-body rod protein, putative [Bacillus anthracis str.
           Sterne]
 gi|167513246|gb|EDR88617.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0193]
 gi|167531226|gb|EDR93904.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0442]
 gi|170128541|gb|EDS97408.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0389]
 gi|170670023|gb|EDT20764.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0465]
 gi|172083592|gb|EDT68652.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0174]
 gi|228662169|gb|EEL17778.1| Flagellar basal-body rod protein flgG [Bacillus cereus 95/8201]
 gi|228845344|gb|EEM90380.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229264645|gb|ACQ46282.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0248]
          Length = 257

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 49/222 (22%), Gaps = 18/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +S      LL    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSDTDF--LLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              ++    K  T ++ +  D  +    +   + E   +   
Sbjct: 180 NNRLIQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMT 221



 Score = 40.0 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 46/173 (26%)

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                    +++ +     A                T   +    S+       G+    
Sbjct: 77  QGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMG 136

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +      +       + +A + T     E     I    K+ + +  
Sbjct: 137 ENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQRENKSFTLAEG 196

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                      +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 197 NIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|329849687|ref|ZP_08264533.1| flagellar basal-body rod protein FlgC [Asticcacaulis biprosthecum
           C19]
 gi|328841598|gb|EGF91168.1| flagellar basal-body rod protein FlgC [Asticcacaulis biprosthecum
           C19]
          Length = 138

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+   E   + + +++Y  +  +I     M Q +L  ++
Sbjct: 98  NVDTLTESMDMREAQRAYEANLNVIETARDMNQKILNILQ 137


>gi|297182937|gb|ADI19086.1| flagellar basal body rod protein [uncultured delta proteobacterium
           HF0070_15B21]
          Length = 258

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/166 (6%), Positives = 28/166 (16%), Gaps = 20/166 (12%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVL----------- 67
           ++  ++  N+ NA    +             V  V  +S+ +N                 
Sbjct: 16  KKIETVANNLANASTVGFKEDQPSFREVLSTVQRVVPQSDEENFLSHEYLDQYVGMDKSA 75

Query: 68  --------HAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                   +  +                E   +               +   +       
Sbjct: 76  VMVDEIGKNFTTGRFRDTGNELDLALENEGFFSISTPQGERFTRAGNFKLDSQGRMVTQD 135

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR 165
              L        +             Q        +    +    +
Sbjct: 136 GFPLLGK-KGPIQIKGNGPIQVDENGQVAVEGTVLDQLKTVRFRNQ 180


>gi|50120637|ref|YP_049804.1| flagellar basal body rod protein FlgC [Pectobacterium
          atrosepticum SCRI1043]
 gi|49611163|emb|CAG74609.1| flagellar basal-body rod protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 134

 Score = 41.9 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F  + +  +  SQ+      N+ NA          Y  +  +  ++        
Sbjct: 1  MSLLNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGQPYRAKQVVFEVNAAPGQSTG 60

Query: 55 QRSENKNMFD 64
                 + D
Sbjct: 61 GVRVANVIED 70


>gi|332673202|gb|AEE70019.1| flagellar basal-body rod protein [Helicobacter pylori 83]
          Length = 269

 Score = 41.9 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|116327146|ref|YP_796866.1| flagellar basal body rod protein FlgB [Leptospira borgpetersenii
          serovar Hardjo-bovis L550]
 gi|116332197|ref|YP_801915.1| flagellar basal body rod protein FlgB [Leptospira borgpetersenii
          serovar Hardjo-bovis JB197]
 gi|116119890|gb|ABJ77933.1| Endoflagellar proximal basal body rod protein [Leptospira
          borgpetersenii serovar Hardjo-bovis L550]
 gi|116125886|gb|ABJ77157.1| Endoflagellar proximal basal body rod protein [Leptospira
          borgpetersenii serovar Hardjo-bovis JB197]
          Length = 143

 Score = 41.9 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
             NN+  +   I  NI NAD  ++ R + +    
Sbjct: 16 RGMNNSILKRKVISDNIANADVPHFKRSEVIFESM 50


>gi|254457917|ref|ZP_05071344.1| flagellar basal body rod protein [Campylobacterales bacterium GD 1]
 gi|207085310|gb|EDZ62595.1| flagellar basal body rod protein [Campylobacterales bacterium GD 1]
          Length = 273

 Score = 41.9 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 34/115 (29%), Gaps = 12/115 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + + +  +         +  +I  N+ N +   +   + +         V   +   K  
Sbjct: 1   MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFKEDNLV---------VGDFQRLYKEA 51

Query: 63  FDKVLHAHSSAIGQQ---RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            D++ + + S  G Q   R +     + +  +     N   T        S E  
Sbjct: 52  RDELPNKNHSEDGAQFLNRAMTKAPQVVDSYTDFTVGNTQQTDNDMDFALSREGL 106


>gi|74317651|ref|YP_315391.1| flagellar basal body rod protein FlgF [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057146|gb|AAZ97586.1| flagellar basal body rod protein FlgF [Thiobacillus denitrificans
           ATCC 25259]
          Length = 246

 Score = 41.9 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/131 (8%), Positives = 31/131 (23%), Gaps = 12/131 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           +  +   A     +A +Q A+   N+ NA    +  +       P    ++  R+     
Sbjct: 1   MDRLIYTAMTGAKHALEQQATTSHNLANATTTGFRAQIDQFRAVPVQGAILPTRAFVVDS 60

Query: 59  --NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++          +        L+        
Sbjct: 61  TTGSDFRSGAIQHTGRELDMAVQGDGWIAVQ------APDGSEAYTRNGSLKLDENGVLL 114

Query: 117 NLSEDILGKTV 127
                 +    
Sbjct: 115 TRDGLQVMGDG 125


>gi|331005470|ref|ZP_08328849.1| hypothetical protein IMCC1989_1994 [gamma proteobacterium IMCC1989]
 gi|330420746|gb|EGG95033.1| hypothetical protein IMCC1989_1994 [gamma proteobacterium IMCC1989]
          Length = 245

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/116 (7%), Positives = 22/116 (18%), Gaps = 7/116 (6%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-------TVVTQRS 57
              + +     N  Q+   +  N+ N     Y R  + T      V        V +   
Sbjct: 2   DAISISAISMQNDLQKLDQLSHNVANMSTPAYKRTLSATESFTNTVSRFESPNRVASTIQ 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                        + ++             +      +   +              
Sbjct: 62  NAIPTISTSRDFTTGSLSSTSNPLDLAIEGDGFFELTNNTGTFYSKRGNFLIDNNG 117


>gi|312135857|ref|YP_004003195.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor
          owensensis OL]
 gi|311775908|gb|ADQ05395.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          owensensis OL]
          Length = 133

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI NAD   Y  +D     
Sbjct: 23 EIISNNIANADTPGYKAKDLNFEA 46


>gi|148380622|ref|YP_001255163.1| flagellar basal-body rod protein FlgC [Clostridium botulinum A
          str. ATCC 3502]
 gi|153931376|ref|YP_001384908.1| flagellar basal body rod protein FlgC [Clostridium botulinum A
          str. ATCC 19397]
 gi|153937867|ref|YP_001388377.1| flagellar basal body rod protein FlgC [Clostridium botulinum A
          str. Hall]
 gi|148290106|emb|CAL84225.1| flagellar basal-body rod protein [Clostridium botulinum A str.
          ATCC 3502]
 gi|152927420|gb|ABS32920.1| flagellar basal-body rod protein FlgC [Clostridium botulinum A
          str. ATCC 19397]
 gi|152933781|gb|ABS39280.1| flagellar basal-body rod protein FlgC [Clostridium botulinum A
          str. Hall]
          Length = 144

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
                + +  +    +  +I  NI NA          Y R+  + 
Sbjct: 5  FDTMRISASGLSAERLRMDTIASNISNATTTRTENGGPYKRKIAVF 50


>gi|28211332|ref|NP_782276.1| flagellar basal body rod protein FlgC [Clostridium tetani E88]
 gi|28203772|gb|AAO36213.1| flagellar basal-body rod protein flgC [Clostridium tetani E88]
          Length = 143

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPE 48
          M +      + +  +    +  +I  NI N+   +      Y R+  +   +  
Sbjct: 1  MKMFNNMRISASGLSAERLRIDTIASNIVNSRSTRGKNGEPYRRKVAIFQENLT 54


>gi|51597636|ref|YP_071827.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896770|ref|YP_001873882.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590918|emb|CAH22574.1| putative flagellar basal-body rod protein FlgF [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699796|gb|ACC90425.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis
           PB1/+]
          Length = 243

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 54/208 (25%), Gaps = 3/208 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N++ + + R D     + + +            
Sbjct: 1   MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGF-RADLEKATATQVMGGGYNSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +    +++ +           + + A             ++  S E         +
Sbjct: 60  QNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREVYTRNGQMDVSAEGALTINGLPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELTVVNDAIKFK 180
           LG                    +  I      +   EI  ++     +     N+     
Sbjct: 120 LGDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQLRKNNRGLLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIS 208
           +     A D   Q      + S +  IS
Sbjct: 180 SNRGPAARDETVQVVNKHLESSNVSAIS 207


>gi|167465320|ref|ZP_02330409.1| flagellar basal body rod protein FlgC [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 149

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M L   F+ + +       +   I  NI NAD+ 
Sbjct: 1  MRLTNGFDISSSALTAQRLRMDVISSNIANADST 34


>gi|83312595|ref|YP_422859.1| flagellar basal body rod protein [Magnetospirillum magneticum
           AMB-1]
 gi|82947436|dbj|BAE52300.1| Flagellar basal body rod protein [Magnetospirillum magneticum
           AMB-1]
          Length = 253

 Score = 41.6 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/127 (7%), Positives = 28/127 (22%), Gaps = 4/127 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRS 57
           ++      A +      +Q   +  N+ NA+   +   + M       +  +   V  + 
Sbjct: 7   TMQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAVGGKL 66

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                   +       + +      F    +     +             R        N
Sbjct: 67  SFVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVN 126

Query: 118 LSEDILG 124
                + 
Sbjct: 127 SQGYAVM 133


>gi|294013087|ref|YP_003546547.1| flagellar basal-body rod protein FlgF [Sphingobium japonicum UT26S]
 gi|292676417|dbj|BAI97935.1| flagellar basal-body rod protein FlgF [Sphingobium japonicum UT26S]
          Length = 246

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 53/211 (25%), Gaps = 4/211 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  + N A      A  + A+I  N+ N +   +                +  R++    
Sbjct: 1   MDRLVNTALTAMRGAMARQAAISNNLANVNTTGFRAEIANAETRWIKGDNLNTRAQASEQ 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 A  +       L        M++               L+ S           +
Sbjct: 61  VIAADMAQGAINETGNPLDVAMNGDAMLAVQAPDGGEAYTRRGDLKVSDSGLLTTGDGLV 120

Query: 123 LGKTV----IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +        +   + V    + S   V +    A+ +   ++  +    S +    D + 
Sbjct: 121 VLGEGGPITLPQMDSVSIAKDGSIWGVPQGGDPANPQQVDKLKLVNPVGSSIAKGTDGLF 180

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            +        D +        + S +   S 
Sbjct: 181 REANGGVLPDDPIATVTGGSLEGSNVNATSA 211


>gi|260466621|ref|ZP_05812809.1| flagellar basal-body rod protein FlgC [Mesorhizobium
          opportunistum WSM2075]
 gi|259029627|gb|EEW30915.1| flagellar basal-body rod protein FlgC [Mesorhizobium
          opportunistum WSM2075]
          Length = 138

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 13/73 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT------TISPEN 49
          L A    A +     S++   +  N+ NA +         Y R+                
Sbjct: 4  LTAALKVAASGLGAQSERLRVVSENLANAQSTGTTPGSDPYRRKTISFVSELDRASGSST 63

Query: 50 VTVVTQRSENKNM 62
          V V +   +  + 
Sbjct: 64 VEVNSIDRDPSDF 76


>gi|239826610|ref|YP_002949234.1| flagellar basal body rod protein FlgB [Geobacillus sp. WCH70]
 gi|239806903|gb|ACS23968.1| flagellar basal-body rod protein FlgB [Geobacillus sp. WCH70]
          Length = 130

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43
          MSL +  F   +   + AS +   I  NI N D  NY  ++   
Sbjct: 1  MSLFSRTFMMLEQGLDYASLREKVIANNIANVDTPNYKAKEVRF 44


>gi|330875985|gb|EGH10134.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 246

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 55/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSGGAMVQTGRELDIAIKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K       D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKSGQPAAADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|24213047|ref|NP_710528.1| flagellar basal body rod protein FlgB [Leptospira interrogans
          serovar Lai str. 56601]
 gi|45656203|ref|YP_000289.1| flagellar basal body rod protein FlgB [Leptospira interrogans
          serovar Copenhageni str. Fiocruz L1-130]
 gi|24193738|gb|AAN47546.1| flagellar basal body rod protein FlgB [Leptospira interrogans
          serovar Lai str. 56601]
 gi|45599437|gb|AAS68926.1| flagellar basal-body rod protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 143

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
             NN+  +   I  NI NAD  ++ R + +    
Sbjct: 16 RGMNNSIFKRKVISDNIANADVPHFKRSEVIFESM 50


>gi|261839205|gb|ACX98970.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 52]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|239628952|ref|ZP_04671983.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239519098|gb|EEQ58964.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 118

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 5/48 (10%), Positives = 11/48 (22%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          M L         +   +    +      NI N +   +  +       
Sbjct: 1  MPLFDDRALGALERGMDAMWLKQQVSSHNIANVETPGFKAKKVEFKDV 48


>gi|210134550|ref|YP_002300989.1| flagellar basal-body rod protein [Helicobacter pylori P12]
 gi|210132518|gb|ACJ07509.1| flagellar basal-body rod protein [Helicobacter pylori P12]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + +  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVDQN 165

Query: 183 SKHDAHDFLDQRDV 196
                 D   Q   
Sbjct: 166 GGITFRDNEAQIQA 179


>gi|66362534|ref|XP_628233.1| protein with DEXDc plus ring plus HELICc; possible SNF2 domain
           [Cryptosporidium parvum Iowa II]
 gi|46229715|gb|EAK90533.1| protein with DEXDc plus ring plus HELICc; possible SNF2 domain
           [Cryptosporidium parvum Iowa II]
          Length = 2042

 Score = 41.6 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 54/191 (28%), Gaps = 5/191 (2%)

Query: 19  QQFASIVR-NIENADNKNY---VRRDTMT-TISPENVTVVTQRSENKNMFDKVLHAHSSA 73
              ++    N  N++  N+           T +       T  S   N      +  +S 
Sbjct: 256 TANSNTANFNTANSNTANFNTANSNTANFNTTNSNTANSNTANSNTANFNTANSNTANSN 315

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
                   S  A     +++   +N+     S    +    + + +       V++   +
Sbjct: 316 TANSNTSNSNTANSNTSNSNTANSNTANSNTSNSNTANSITTTSSNCSRSKGIVLNMNIK 375

Query: 134 VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
           +  N  +   ++   + D     ++  S L   L   ++ N         K+       +
Sbjct: 376 MYLNRTSLDGKLLSRKKDGKNSFKILFSWLNEELKLPSIENYTYNQIKNKKNSFQTIQIK 435

Query: 194 RDVLLQKISEI 204
            + L     E 
Sbjct: 436 PNELYSIFQEY 446


>gi|323705449|ref|ZP_08117024.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323535351|gb|EGB25127.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 136

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            + +  +   I  NI N D   + R D     
Sbjct: 15 ALDASELRNEVISNNIANVDTPGFKRSDVNFES 47


>gi|88704308|ref|ZP_01102022.1| flagellar basal body rod protein FlgC [Congregibacter litoralis
          KT71]
 gi|88701359|gb|EAQ98464.1| flagellar basal body rod protein FlgC [Congregibacter litoralis
          KT71]
          Length = 140

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL    + A    +  S +  +I  N+ NA+
Sbjct: 1  MSLFDAISVAATSLDAQSTRLNTISSNLANAN 32


>gi|46202330|ref|ZP_00053401.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum
           magnetotacticum MS-1]
          Length = 205

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 39/153 (25%), Gaps = 22/153 (14%)

Query: 14  CNNASQQFASIVRNIENADNKNYVRRDTMT--------------------TISPENVTVV 53
             +      SI +NI N +   Y  +DT+                       +   + + 
Sbjct: 1   MQSMDWAMGSISQNIANVNTTGYKEKDTLFKTVLSESHTAPASTQNSPNKNTATTGLDIF 60

Query: 54  TQRSENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
             R+ ++N+  K   + + ++        + F  + +  S         +  +       
Sbjct: 61  GVRAVDRNLITKSGTITSSTTWSDMAINGRGFFIVTQPDSTGAPGAGGTSGTLYTRAGDF 120

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSARE 144
              + N +                 +    +  
Sbjct: 121 TQRAVNGNNYFTTADGNYLMGWAADSKGVISAT 153


>gi|317180747|dbj|BAJ58533.1| flagellar basal-body rod protein [Helicobacter pylori F32]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|228945375|ref|ZP_04107730.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814347|gb|EEM60613.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 257

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 52/230 (22%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTAGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              ++    K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NNRLIQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 229



 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/214 (7%), Positives = 56/214 (26%), Gaps = 8/214 (3%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                     G +  +  +  +VVP   +       + + + +    +   +      F+
Sbjct: 44  DVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGTAGTASFFV 103

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                +         +       Q  S    + +     +        +     L +   
Sbjct: 104 TSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVT 163

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +         V     N  +    ++           +         +   +       
Sbjct: 164 QNNIARLQTKTVGAEANNRLIQRENKSF-----TLAEGNIADLPNGTGL---VKNHMLEN 215

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 216 SNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 249


>gi|317008999|gb|ADU79579.1| flagellar basal-body rod protein [Helicobacter pylori India7]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 38/194 (19%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +     +       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEGTHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + +  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
                 D   Q   
Sbjct: 166 GGITFRDNEAQIQA 179


>gi|254463002|ref|ZP_05076418.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium
           HTCC2083]
 gi|206679591|gb|EDZ44078.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 139

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 5/37 (13%), Positives = 18/37 (48%)

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           V++ EE+  +I+  + Y  + +++     ++   +  
Sbjct: 100 VDVNEEMVDMIEASRQYQNNLEVVTTMRTLMMRTVNM 136


>gi|153953775|ref|YP_001394540.1| flagellar basal body rod protein FlgB [Clostridium kluyveri DSM
          555]
 gi|219854391|ref|YP_002471513.1| hypothetical protein CKR_1048 [Clostridium kluyveri NBRC 12016]
 gi|146346656|gb|EDK33192.1| FlgB [Clostridium kluyveri DSM 555]
 gi|219568115|dbj|BAH06099.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 133

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            + AS++  +I  N+ N +   Y R+      S
Sbjct: 19 GLDAASERSKAISDNLANVNTAGYKRKYVTFEES 52


>gi|152988763|ref|YP_001349649.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PA7]
 gi|150963921|gb|ABR85946.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PA7]
          Length = 249

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/238 (6%), Positives = 52/238 (21%), Gaps = 16/238 (6%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSENK 60
              + +  +  +    +   N+ N     +       R   +   S              
Sbjct: 5   LYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGT 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     L    + +        F A++          +      + +        +    
Sbjct: 65  DFSHGSLQETGNELDIAIDGDGFVAVQ------APDGSEAYVRTAGMHIDAVGMLRTGDG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN----LRRFLSELTVVNDA 176
             +       A    +           IRA  +    + + +    +   L ++    D 
Sbjct: 119 LPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQMEKGTDG 178

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           +        +     D    ++    E   ++ +      + +       +      +
Sbjct: 179 LLHYKPQPGEQVPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAE 236


>gi|254508430|ref|ZP_05120550.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus 16]
 gi|219548640|gb|EED25645.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus 16]
          Length = 249

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 33/157 (21%), Gaps = 7/157 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R                  
Sbjct: 1   MDRALYLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGEGLPTRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYS 115
               N     +      +        + ++ +    +    + +    ++ L  S     
Sbjct: 61  RPGHNFQQGSVITTGRDLDVTIEGNGWISVLDKTGKEGLTRDGNLKIDVNGLLVSGNGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
                       I  ++  +    T +   Q   ADA
Sbjct: 121 VLGETGAPITLPIPLSKVEIGTDGTISVVPQGAPADA 157



 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           TN       ++  G       ++         +             VN   E++ LI ++
Sbjct: 167 TNTDNQSLFKDVNGLFRAKDPNAAYEADAGVKLLT----GAIEGSNVNAIGEMTSLIDLQ 222

Query: 456 QSYNISNKLIMFTDKM 471
           + + +  K++   ++M
Sbjct: 223 RQFEMQVKMMSTAEEM 238


>gi|237752647|ref|ZP_04583127.1| biosynthetic arginine decarboxylase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376136|gb|EEO26227.1| biosynthetic arginine decarboxylase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 71

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 417 DSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
                 +    +  ++ ++   T  V+L  ++   I  +     + K I   D MLQTLL
Sbjct: 8   GYDAFSVAQSGISTNVQQATLETSNVDLTTQIPQQIVAQNGVEANVKSIQTADSMLQTLL 67

Query: 477 EGV 479
           +  
Sbjct: 68  DIK 70


>gi|27381986|ref|NP_773515.1| flagellar basal body rod protein FlgC [Bradyrhizobium japonicum
          USDA 110]
 gi|27355156|dbj|BAC52140.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA
          110]
          Length = 138

 Score = 41.6 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
          SL A    A +     S +   +  N+ NA +         Y R+      +
Sbjct: 4  SLSASLTVASSGLEAQSTRMRIVSENLANATSTGRTAGADPYQRKTITFDAA 55


>gi|259418017|ref|ZP_05741936.1| flagellar basal-body rod protein FlgF [Silicibacter sp. TrichCH4B]
 gi|259346923|gb|EEW58737.1| flagellar basal-body rod protein FlgF [Silicibacter sp. TrichCH4B]
          Length = 238

 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/126 (6%), Positives = 24/126 (19%), Gaps = 4/126 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+       +  ++  NI N+    Y     + +   ++       S       +     
Sbjct: 12  QSGLL---NEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQESLSMG-RANIRNTSLE 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              + Q           +     +    +          + E          +       
Sbjct: 68  QGTMSQTNGSFDLAIEGDGFFMVETPAGNRLTRAGNFTPNAEGDLVTADGYRVLDAGQAP 127

Query: 131 AEEVVQ 136
                 
Sbjct: 128 MFVPGD 133


>gi|285018208|ref|YP_003375919.1| flagellar basal-body rod protein flgf [Xanthomonas albilineans GPE
           PC73]
 gi|283473426|emb|CBA15931.1| probable flagellar basal-body rod protein flgf [Xanthomonas
           albilineans]
          Length = 251

 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 29/141 (20%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q   ++  N+ N +   +  +   T       +    R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQGTVSHNLANVETAGFKAQLANTEAFRIQGSGYPSRIDALHI 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +       L         ++              +L  +        S   
Sbjct: 61  DQGFDRDVGAQQVTGNPLDVSLVANNWLAVQTSDGKEAYTRGGELALTANGQLVTASGRA 120

Query: 123 LGKTVIDNAEEVVQNFNTSAR 143
           +  T  +              
Sbjct: 121 VLDTEGNPMSIPPHQSLEIGN 141


>gi|209695764|ref|YP_002263694.1| flagellar basal body rod protein FlgC [Aliivibrio salmonicida
          LFI1238]
 gi|208009717|emb|CAQ80021.1| flagellar basal-body rod protein FlgC [Aliivibrio salmonicida
          LFI1238]
          Length = 138

 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTI 45
          MSL  VFN A +  +  S +  +   N+ NAD      ++ Y  R  +   
Sbjct: 1  MSLFNVFNVAGSAMSAESVRLNTTSSNMANADSVSSSASETYKARHAIFGA 51



 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++     +MLQ+ L  
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADAGKQMLQSTLRM 136


>gi|146281769|ref|YP_001171922.1| flagellar basal body rod protein FlgC [Pseudomonas stutzeri A1501]
 gi|145569974|gb|ABP79080.1| flagellar basal-body rod protein FlgC [Pseudomonas stutzeri A1501]
          Length = 134

 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +++  + +L+     MLQ +L
Sbjct: 95  NVNVVEEMADMISASRAFQTNAELMNTAKTMLQKVL 130


>gi|15645706|ref|NP_207883.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori
          26695]
 gi|2314244|gb|AAD08138.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori
          26695]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|208434303|ref|YP_002265969.1| flagellar basal-body rod protein [Helicobacter pylori G27]
 gi|208432232|gb|ACI27103.1| flagellar basal-body rod protein [Helicobacter pylori G27]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|261837791|gb|ACX97557.1| flagellar basal-body rod protein [Helicobacter pylori 51]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGIAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|187778746|ref|ZP_02995219.1| hypothetical protein CLOSPO_02341 [Clostridium sporogenes ATCC
          15579]
 gi|187772371|gb|EDU36173.1| hypothetical protein CLOSPO_02341 [Clostridium sporogenes ATCC
          15579]
          Length = 153

 Score = 41.6 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
                + +  +    +  +I  NI NA          Y R+  + 
Sbjct: 14 FDTMRISASGLSAERLRMDTIASNIANATTTRTENGGPYKRKIAVF 59


>gi|119503642|ref|ZP_01625725.1| flagellar basal-body rod protein FlgC [marine gamma
          proteobacterium HTCC2080]
 gi|119460704|gb|EAW41796.1| flagellar basal-body rod protein FlgC [marine gamma
          proteobacterium HTCC2080]
          Length = 134

 Score = 41.6 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL    + A    +  + +  +I  N+ NA+
Sbjct: 1  MSLFDSMSIAGTALSAQTTRINTIASNMANAN 32


>gi|296534150|ref|ZP_06896646.1| flagellar basal-body rod protein FlgC [Roseomonas cervicalis ATCC
          49957]
 gi|296265526|gb|EFH11655.1| flagellar basal-body rod protein FlgC [Roseomonas cervicalis ATCC
          49957]
          Length = 136

 Score = 41.6 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 10/69 (14%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTT---ISPENV 50
          M L    + + +  +  S +   +  N+ N D+         Y R+              
Sbjct: 1  MDLERALSVSASGMSAQSARLRVVAENVANRDSTGETPGAEPYRRKTVTFANRLDRALGA 60

Query: 51 TVVTQRSEN 59
            V      
Sbjct: 61 ETVRVARIG 69



 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 22/40 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            V+   E+  + + ++SY+ +  ++  T  M+Q  ++ ++
Sbjct: 96  NVDSMVEMMDMREAQRSYSANLSVLETTRAMIQRAIDLLR 135


>gi|224825165|ref|ZP_03698271.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002]
 gi|224602836|gb|EEG09013.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002]
          Length = 246

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 22/125 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A     +   Q A+  +N+ N     Y          P        R+   + 
Sbjct: 1   MDRMIYLAMTGAKHVMTQQATTSQNLANVHTNGYKADQVSFRALPVVGDGAPTRTYVVDN 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  S                  +                        +  S   
Sbjct: 61  TIGHDLSQGSLQQTGNDTDFALGTPGFFTVQTADGREAYSRDGGFVADPNGMLRTRSGLP 120

Query: 123 LGKTV 127
           +    
Sbjct: 121 ILGDG 125


>gi|15964413|ref|NP_384766.1| flagellar basal body rod protein FlgC [Sinorhizobium meliloti 1021]
 gi|307311555|ref|ZP_07591196.1| flagellar basal-body rod protein FlgC [Sinorhizobium meliloti
           BL225C]
 gi|307318910|ref|ZP_07598341.1| flagellar basal-body rod protein FlgC [Sinorhizobium meliloti AK83]
 gi|17380478|sp|Q52944|FLGC_RHIME RecName: Full=Flagellar basal-body rod protein flgC
 gi|15073590|emb|CAC45232.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021]
 gi|306895324|gb|EFN26079.1| flagellar basal-body rod protein FlgC [Sinorhizobium meliloti AK83]
 gi|306899572|gb|EFN30201.1| flagellar basal-body rod protein FlgC [Sinorhizobium meliloti
           BL225C]
          Length = 139

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 15/122 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
           L +    + +     S +   +  NI NA +         + R+                
Sbjct: 4   LTSALKVSASGLQAESTRLRIVSENIANARSTGDAPGADPFRRKTISFAA--------EV 55

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
              +     +V    +                +        N +    ++ +R++  +Y 
Sbjct: 56  DRASGASLVEVERLGTDDSDFNIEFDPGNPAADEKGMVKLPNVNILIEMADMREANRAYE 115

Query: 116 KN 117
            N
Sbjct: 116 AN 117


>gi|110632658|ref|YP_672866.1| flagellar basal body rod protein FlgC [Mesorhizobium sp. BNC1]
 gi|110283642|gb|ABG61701.1| flagellar basal-body rod protein FlgC [Chelativorans sp. BNC1]
          Length = 139

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 13/73 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI------SPEN 49
          L      A +     S++   +  N+ NA           Y R+                
Sbjct: 4  LSTAVKIAGSGLAAQSERMRVVSENLANAQSTSEVPGGDPYRRKTISFAAELGRGNGGAM 63

Query: 50 VTVVTQRSENKNM 62
          V V     +    
Sbjct: 64 VEVSAIARDPAEF 76


>gi|113884291|gb|ABI38343.1| flagellar basal-body rod protein FlgF [Shewanella sp. MR-4]
 gi|113888281|gb|ABI42332.1| flagellar basal-body rod protein FlgF [Shewanella sp. MR-7]
          Length = 252

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 30/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R          +       + + 
Sbjct: 10  LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPSRVFAMVETPSA 69

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L         N   
Sbjct: 70  NFRAGPIKTTGRDLDVAIKGDGWFAVQ------AKDGSEAYTRSGSLSFDSTGLLHNDRG 123

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     T ++
Sbjct: 124 NPVMGDAGPIVLPLPIEKVTISQ 146



 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 202 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 240


>gi|238758112|ref|ZP_04619292.1| Flagellar basal-body rod protein flgC [Yersinia aldovae ATCC
          35236]
 gi|238703650|gb|EEP96187.1| Flagellar basal-body rod protein flgC [Yersinia aldovae ATCC
          35236]
          Length = 134

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NA          Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRLNVSASNMANAESVTGPDGQPYRAKQVVFQVAAQAGQETG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSQIVDD 70


>gi|317121813|ref|YP_004101816.1| flagellar basal-body rod protein FlgC [Thermaerobacter
          marianensis DSM 12885]
 gi|315591793|gb|ADU51089.1| flagellar basal-body rod protein FlgC [Thermaerobacter
          marianensis DSM 12885]
          Length = 179

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 11/33 (33%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
           +   F+ A +       +   I  N+ N D  
Sbjct: 4  GVFNTFDIAASGMTAQRLRLDLIASNLANVDTT 36


>gi|118588700|ref|ZP_01546108.1| flagellar basal-body rod protein C [Stappia aggregata IAM 12614]
 gi|118438686|gb|EAV45319.1| flagellar basal-body rod protein C [Stappia aggregata IAM 12614]
          Length = 136

 Score = 41.6 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 7/52 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          M L+     + +     + +   I  NI NA++         Y R+      
Sbjct: 1  MDLIKSLFISASGLRAQNGRMRIIAENIANANSTAKTPEELPYRRKIPTFKS 52



 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E + + + ++SY  +  +I  T KMLQ  ++ ++
Sbjct: 96  NVNTLIETTDMREAQRSYEANLNVIDSTRKMLQRTIDILR 135


>gi|297379576|gb|ADI34463.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori v225d]
          Length = 269

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 39/194 (20%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +    ++       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + N  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQN 165

Query: 183 SKHDAHDFLDQRDV 196
            +    D       
Sbjct: 166 GEITFRDNEAPIQA 179


>gi|114765223|ref|ZP_01444355.1| flagellar basal-body rod protein C [Pelagibaca bermudensis
          HTCC2601]
 gi|114542358|gb|EAU45386.1| flagellar basal-body rod protein C [Roseovarius sp. HTCC2601]
          Length = 136

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 13/74 (17%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTT------ISPE 48
          +L  V + A +      ++   +  N+ NA +         Y R+               
Sbjct: 3  TLKTVLSVAASGMRAQGERLKVVSENVANASSTGNSNGEDPYRRKIISFQEMVDRDSGAS 62

Query: 49 NVTVVTQRSENKNM 62
           V V   R ++ + 
Sbjct: 63 MVEVDGVRRDDADF 76


>gi|262273528|ref|ZP_06051342.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP
           101886]
 gi|262222506|gb|EEY73817.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP
           101886]
          Length = 243

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/159 (6%), Positives = 30/159 (18%), Gaps = 20/159 (12%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYV-----RRDTMTTISPENVTV- 52
           +  +   A +               +  N+ N +   +       +              
Sbjct: 1   MDKLLFTAVSGATRVITAQQ----VLANNLANVNTDGFRADIGLAKSVEIQGKGLETRTL 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
               S   +     L    + +        F A++         +            +  
Sbjct: 57  TGIGSTWSDFTPGALKRTDNPLDVAIRGNGFFAVQ------VGEDGEAYTRAGAFHLNEN 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                    +LG        E  +        +  + A 
Sbjct: 111 GDLMLGDRPVLGDGGPIAIPEHEKLMIGQDGTISVVTAG 149


>gi|300024608|ref|YP_003757219.1| flagellar basal-body rod protein FlgC [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299526429|gb|ADJ24898.1| flagellar basal-body rod protein FlgC [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 139

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 9/55 (16%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
          MS  L+A    A +     S +   +  NI NA           Y R+       
Sbjct: 1  MSDPLIASTRSAASGLFAQSSRMRVVSENIANASTTGKTPGADPYQRKTISFQSV 55


>gi|296127541|ref|YP_003634793.1| flagellar basal-body rod protein FlgB [Brachyspira murdochii DSM
          12563]
 gi|296019357|gb|ADG72594.1| flagellar basal-body rod protein FlgB [Brachyspira murdochii DSM
          12563]
          Length = 142

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTT 44
           N    +   I  NI N    N+ R D    
Sbjct: 20 LNVYGLRAEVIADNIANVSTPNFKRSDVTFE 50


>gi|260774939|ref|ZP_05883840.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609194|gb|EEX35352.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 249

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/200 (8%), Positives = 52/200 (26%), Gaps = 14/200 (7%)

Query: 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN 341
            +  + + +      +                   L +    +   + L     E +  N
Sbjct: 43  SMQAYGDGMPSRVFSMTERPGHNFQQGSVITTGRDLDVTIQDQGWISVLDNTGKEGLTRN 102

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLA----------GYPDLINHYCDSFNKNFIFDPV 391
              + + + +   G+ +         +           G    I+        + I    
Sbjct: 103 GNMKVDVNGMLTTGNGNLVLGETGAPITIPIPISKIEVGTDGTISVVPQGAPADAIEIVD 162

Query: 392 AGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
               T+       ++  G       ++         +             VN   E++ L
Sbjct: 163 RIKLTSTNNQSLYKDVNGLFRSKDPNAAYEMDAGVKLLT----GALEGSNVNAIGEMTNL 218

Query: 452 IKVEQSYNISNKLIMFTDKM 471
           I +++ + +  K++   ++M
Sbjct: 219 IDLQRQFEMQVKMMSTAEEM 238



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 50/212 (23%), Gaps = 7/212 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGDGMPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYS 115
               N     +      +      Q + ++ +    +    N +    ++ +  +     
Sbjct: 61  RPGHNFQQGSVITTGRDLDVTIQDQGWISVLDNTGKEGLTRNGNMKVDVNGMLTTGNGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                       I  ++  V    T +   Q   ADA + ++          S    VN 
Sbjct: 121 VLGETGAPITIPIPISKIEVGTDGTISVVPQGAPADAIEIVDRIKLTSTNNQSLYKDVNG 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
             + K  +     D   +      + S +  I
Sbjct: 181 LFRSKDPNAAYEMDAGVKLLTGALEGSNVNAI 212


>gi|222084859|ref|YP_002543388.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
 gi|221722307|gb|ACM25463.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
          Length = 244

 Score = 41.6 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/150 (5%), Positives = 33/150 (22%), Gaps = 1/150 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVV-TQRSENKN 61
           + +    + +      ++  ++  N+ N +   +   +        N       +    +
Sbjct: 1   MQSGIYVSLSSQMALERRLTTVADNMANVNTTGFRGTEVKFNQVLSNTENKLNAKVAFVS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +  L   +  +     L  F    E     +           +   +      +    
Sbjct: 61  QGNDYLSTSNGELQNTGNLLDFAVKGEAWFGLNTPAGLVLTRDGRFTMTDSGALVSARGY 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
            +        +        +      I  +
Sbjct: 121 PVLDPGGAPIQLDPTGGAPTVSSNGTITQN 150


>gi|261211321|ref|ZP_05925609.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC341]
 gi|260839276|gb|EEX65902.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC341]
          Length = 249

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/103 (6%), Positives = 19/103 (18%), Gaps = 6/103 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R                  
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPTRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               N     +      +      + + ++ +    +    N 
Sbjct: 61  RPGNNFAQGSVITTGRDLDVTIQGEGWISVLDKTGKEGLTRNG 103



 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           I         VN   E++ LI +++ + +  K++   ++M
Sbjct: 199 ILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|77457728|ref|YP_347233.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens
           Pf0-1]
 gi|77381731|gb|ABA73244.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 44/216 (20%), Gaps = 17/216 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMSERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +     L      +        F A++                   L        +  
Sbjct: 63  ATDFTPGSLVQTGRDLDVAVSGNGFIAVQN------PNGGESYVRTGSLNIDALGVLRAG 116

Query: 119 SEDILGKTVIDNAEEVVQNFNTS-AREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q         +          +  E+  ++    ++  +N  +
Sbjct: 117 NGMPVMGNGGPIAVPPEQQVEVGEDGTISIRAMGEGPRVMAEVDRIKLVNPDIKNMNKGL 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
                +K       D    L+    E   ++ +   
Sbjct: 177 DGSIYTKDGQPAPADANVKLVSGFLESSNVNAVEEM 212


>gi|13472574|ref|NP_104141.1| flagellar basal body rod protein FlgC [Mesorhizobium loti
          MAFF303099]
 gi|14023320|dbj|BAB49927.1| flagellar basal-body rod protein; FlgC [Mesorhizobium loti
          MAFF303099]
          Length = 138

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 13/73 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT------TISPEN 49
          L A    A +     S++   +  N+ NA +         Y R+                
Sbjct: 4  LTAALKVAASGLGAQSERLRVVSENLANAQSTGTTPGADPYRRKTISFVSELDRASGAST 63

Query: 50 VTVVTQRSENKNM 62
          V V +   +    
Sbjct: 64 VEVNSIDRDPSVF 76


>gi|163742543|ref|ZP_02149929.1| flagellar basal-body rod protein FlgF [Phaeobacter gallaeciensis
           2.10]
 gi|161384128|gb|EDQ08511.1| flagellar basal-body rod protein FlgF [Phaeobacter gallaeciensis
           2.10]
          Length = 238

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/110 (7%), Positives = 24/110 (21%), Gaps = 4/110 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+      ++   +  NI N+    Y     + +   ++       S       +     
Sbjct: 12  QSGLM---REMRVVANNIANSATTGYRAEGIIFSEFIQSAPGQESLSMG-RANIRNTSMA 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
             A+ Q           +     +               + +     +  
Sbjct: 68  QGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDG 117


>gi|170722890|ref|YP_001750578.1| flagellar basal body rod protein FlgF [Pseudomonas putida W619]
 gi|169760893|gb|ACA74209.1| flagellar basal-body rod protein FlgF [Pseudomonas putida W619]
          Length = 248

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 57/243 (23%), Gaps = 17/243 (6%)

Query: 1   MSLLAVFNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           M++  +   A      +    A  +   N+ N     +       R   +   S  +   
Sbjct: 1   MTVDKMLYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPSRAF 58

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   +  +  +      +      Q F A++          +        L     
Sbjct: 59  AMTERPATDFSEGPMVETGRDLDVAVAGQGFIAVQ------APDGSEAYVRTGSLNIDAL 112

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELT 171
              +  +   +       A    Q     A     IR+   D  +  E+  ++    +  
Sbjct: 113 GVLRAGNGMPVIGNGGPIAIPPEQKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTK 172

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   +     +        D    ++    E   ++ +    + + +       +    
Sbjct: 173 GLTKGLDGLIHTTSGQPAAADVNVKVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMN 232

Query: 232 PRD 234
              
Sbjct: 233 AAK 235


>gi|24374756|ref|NP_718799.1| flagellar basal body rod protein FlgF [Shewanella oneidensis MR-1]
 gi|24349420|gb|AAN56243.1|AE015761_13 flagellar basal-body rod protein FlgF [Shewanella oneidensis MR-1]
          Length = 247

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/143 (6%), Positives = 30/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              + +       + A    N+ NA+   +       R                  + + 
Sbjct: 5   LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMVETPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     + +    +        + A++          +        L         N   
Sbjct: 65  NFRSGPIKSTGRDLDVAIKGDGWFAVQ------AQDGSEAYTRSGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     T ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVTISQ 141



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 18/40 (45%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 196 SVESGAVEGSNVNSVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|323492337|ref|ZP_08097490.1| flagellar basal body rod protein [Vibrio brasiliensis LMG 20546]
 gi|323313384|gb|EGA66495.1| flagellar basal body rod protein [Vibrio brasiliensis LMG 20546]
          Length = 243

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/131 (8%), Positives = 33/131 (25%), Gaps = 14/131 (10%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      V    +     +  T+
Sbjct: 1   MDSLLFTATSGASRVLQAQ----HVRSNNLSNADTAGFRADMERVSSIPLQGSGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S +    +  +      +    +   +  ++     + +              S+ 
Sbjct: 57  VVTNSASTRFDEGDIVKTGRPLDVAVMGDGYLTVQTADGQEAYTRAGNIKVDPFGALSIN 116

Query: 113 SYSKNLSEDIL 123
            ++       L
Sbjct: 117 GFAVLGDGGPL 127


>gi|221639494|ref|YP_002525756.1| Flagellar proximal rod protein FlgF [Rhodobacter sphaeroides KD131]
 gi|221160275|gb|ACM01255.1| Flagellar proximal rod protein FlgF [Rhodobacter sphaeroides KD131]
          Length = 251

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       VN  EEL   I++++++ ++ ++I    ++
Sbjct: 200 VLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSAKEL 239


>gi|153001471|ref|YP_001367152.1| flagellar basal body rod protein FlgF [Shewanella baltica OS185]
 gi|160876202|ref|YP_001555518.1| flagellar basal body rod protein FlgF [Shewanella baltica OS195]
 gi|151366089|gb|ABS09089.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS185]
 gi|160861724|gb|ABX50258.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS195]
 gi|315268392|gb|ADT95245.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS678]
          Length = 247

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 29/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +       + A    N+ NA+   +       R                  S + 
Sbjct: 5   LYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMTESPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L         N   
Sbjct: 65  NFRSGPIKTTGRDLDVAIKGDGWFAVQ------AKDGSEAYTRAGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     + ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVSISQ 141



 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 197 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|222053600|ref|YP_002535962.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32]
 gi|221562889|gb|ACM18861.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32]
          Length = 146

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          M      + + +       +   I  N+ NA +    +   Y R+D +   
Sbjct: 1  MDFFTSMDISASALTAERTRMNLISSNLANAGSTRTAEGGPYKRKDAVFAA 51


>gi|126462483|ref|YP_001043597.1| hypothetical protein Rsph17029_1715 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104147|gb|ABN76825.1| protein of unknown function DUF1078 domain protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 251

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       VN  EEL   I++++++ ++ ++I    ++
Sbjct: 200 VLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSAKEL 239


>gi|330967092|gb|EGH67352.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 246

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 55/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSGGAMVETGRELDIAIKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K       D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKSGQPAAADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|283834457|ref|ZP_06354198.1| flagellar basal-body rod protein FlgC [Citrobacter youngae ATCC
           29220]
 gi|291070004|gb|EFE08113.1| flagellar basal-body rod protein FlgC [Citrobacter youngae ATCC
           29220]
          Length = 143

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/123 (7%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA++        Y  R  +      N  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTIRLNTVASNMANAESPASSEAQAYKARSPVFAAVYNNSLIGG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +     + G  +  +    + +      + + +    ++ +  +   +
Sbjct: 61  HNRHAIDGASVQVQDVMQSGGAVKRYEPHHPMADQNGFVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             +
Sbjct: 121 ETD 123


>gi|218886418|ref|YP_002435739.1| hypothetical protein DvMF_1322 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757372|gb|ACL08271.1| protein of unknown function DUF1078 domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 136

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/119 (9%), Positives = 36/119 (30%), Gaps = 2/119 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++  F    +  +      A    N+ N +   +   D      P +      +     +
Sbjct: 1   MIDGFGTPLSALDAFGTSMAVTANNVANMNTDEFRASDVRLQTGPASQDGQDGQERGVQV 60

Query: 63  FDKVLHAHSSAI--GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +         +    +R++ +  ++    SA +  N    + +  +     ++  N +
Sbjct: 61  AEIRQSTTEGPLRMDLRRVVHADGSVTVETSAIEGSNTDVANEMVSMLTDQRAFEANAA 119



 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 5/46 (10%), Positives = 20/46 (43%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            +  S       ++  E+  ++  ++++  +  ++   D+M   L+
Sbjct: 87  TVETSAIEGSNTDVANEMVSMLTDQRAFEANAAVVRARDEMTGILV 132


>gi|167585192|ref|ZP_02377580.1| flagellar basal-body rod protein FlgC [Burkholderia ubonensis Bu]
          Length = 141

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPEN 49
          SL+ +F  A +  +  SQ+      NI NAD+        Y  +  +    P+ 
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNIANADSATGPDGKPYKAKQVVFAADPQG 56



 Score = 36.5 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             Y     V+  +E+  +I   +SY  + + +    +++
Sbjct: 95  NGYVQMPNVDPVQEMVNMISASRSYQANVETLNTAKQLM 133


>gi|126668559|ref|ZP_01739513.1| Flagellar basal body rod protein [Marinobacter sp. ELB17]
 gi|126626964|gb|EAZ97607.1| Flagellar basal body rod protein [Marinobacter sp. ELB17]
          Length = 250

 Score = 41.6 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/137 (6%), Positives = 30/137 (21%), Gaps = 16/137 (11%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNYV------RRDTMTTISPENVTVVT 54
           +        +         A  +   N+ N     +       R   +            
Sbjct: 1   MDKALYIGMSG--AKQNMLAQRAHANNLANVTTTGFKKDFAQARSMPVFGGHHPTRAYAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 ++    L      +       S+ A++  +  +             L+  +   
Sbjct: 59  TERPGTDLSSGALMETGRKLDVAIEGDSWLAVQNNLGEE------VFTRSGSLQIDVNGL 112

Query: 115 SKNLSEDILGKTVIDNA 131
            +  + +++       A
Sbjct: 113 LRLANGEMVLGNGGPVA 129


>gi|262404539|ref|ZP_06081094.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC586]
 gi|262349571|gb|EEY98709.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC586]
          Length = 249

 Score = 41.6 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/103 (6%), Positives = 19/103 (18%), Gaps = 6/103 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R                  
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPTRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               N     +      +      + + ++ +    +    N 
Sbjct: 61  RPGNNFAQGSVITTGRDLDITVQGEGWISVLDKTGKEGLTRNG 103



 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         VN   E++ LI +++ + +  K++   ++M
Sbjct: 199 VLTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|225158947|ref|ZP_03725259.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2]
 gi|224802442|gb|EEG20702.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2]
          Length = 261

 Score = 41.6 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 66/253 (26%), Gaps = 22/253 (8%)

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
            N   ++ +    +  +        A  + R   V    +   ++ R    + +      
Sbjct: 7   QNAASLNALERWQDVVTQNISSSQTAAFKRRTVQVTGNYSGEFQLPRPTAFAPAHPGATG 66

Query: 309 GNSENV-PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKN 367
            + +       + +    L     Q     + +              G +      +++ 
Sbjct: 67  SSGDTRRAVFPLTNINISLTPGEAQPTRGELDIALPGDGFFKVRDASGVILYTRAGSLQI 126

Query: 368 LAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL-------LEYARNSIGWLEKNRSDSHD 420
                 +     D  +       +   +T  +L       +      IG L      +  
Sbjct: 127 SPERTLVTAQGMDVLSDADTPIQLETESTTSSLVFNDDGTISQGETIIGRLGIVTFANPT 186

Query: 421 LHMKSQVVFNH--------------ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466
           L                        + + Y  +  V+   E+  LI + ++Y  + K+I 
Sbjct: 187 LLTPISGGLFTAPPAAGPQQMDEPGVIQGYIESSNVSQLREMVDLITISRAYEANQKMIQ 246

Query: 467 FTDKMLQTLLEGV 479
             D  +   LE +
Sbjct: 247 SRDDTIGKTLEAL 259


>gi|218516085|ref|ZP_03512925.1| flagellar basal body rod protein FlgC [Rhizobium etli 8C-3]
          Length = 132

 Score = 41.6 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 7/47 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
              A +     S +   +  NI NA    D      Y R+      
Sbjct: 1  AMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQ 47


>gi|114777904|ref|ZP_01452818.1| hypothetical protein SPV1_05764 [Mariprofundus ferrooxydans PV-1]
 gi|114551691|gb|EAU54243.1| hypothetical protein SPV1_05764 [Mariprofundus ferrooxydans PV-1]
          Length = 247

 Score = 41.6 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/142 (9%), Positives = 31/142 (21%), Gaps = 7/142 (4%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-----VTVVTQRSENKNMF 63
                   A  +   I  N+ N ++  Y+   T  +                 +      
Sbjct: 8   SGVAG-QMAQNKLDGIAHNLANVNSVGYMEDRTSFSSMFSGKMSREGVPSKTSAAYLTAS 66

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT-HYISKLRDSLESYSKNLSEDI 122
            + +   +  I Q      F    +        + +         +   E    N S   
Sbjct: 67  TQYVSTQAGNIRQTNNDLDFSVHGDGYFRIQMKDGTEALTRAGNFKLDAEGNLLNQSGLA 126

Query: 123 LGKTVIDNAEEVVQNFNTSARE 144
           +        +  V   + +   
Sbjct: 127 VLDKNGGPIQLPVGKISATDNG 148


>gi|291225233|ref|XP_002732605.1| PREDICTED: fibrillin 2-like, partial [Saccoglossus kowalevskii]
          Length = 2932

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/412 (6%), Positives = 81/412 (19%), Gaps = 9/412 (2%)

Query: 31   ADNKNY--VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88
            A  + +         T +  + TV                  +S   +         +  
Sbjct: 1393 ATTEGFDTTSEGVEGTTTVMDTTVGATT--TSEYATTEGFDTTSESAEGITTVMDTTVGA 1450

Query: 89   MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
              +++                +       +      +       +           V+  
Sbjct: 1451 TTTSEYATTEGIDRTSEGAEGTATDIDTTIGATTTSEYATTEGFDTTSESAEGTTTVKDT 1510

Query: 149  RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
               A    E   +      SE       +   T       ++       + + SE    +
Sbjct: 1511 TVGATTTSEYATTEDFVTTSESAEGTTTVMDTTVGATTTSEY--ATTEGIDRTSEGAEGT 1568

Query: 209  TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                +       TS+  T           E   +   T+       +         ++  
Sbjct: 1569 ATDMDTTVGAKTTSEYATTEGFDTTSEGAEGTTTVMDTTVGATTTSEYATTEGFDTTSEG 1628

Query: 269  KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                +    + D+ V             L  +    +      +   G          + 
Sbjct: 1629 A---EGTTTVMDTTVGATTTSEYATTEGLDTTSEGAEGTTTVMDTTVGATTTSEYATTEG 1685

Query: 329  KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                             +  +      + ++      +   G   +++    +   +   
Sbjct: 1686 LDTTSEGAEGTTTVMDTTVGATTTSEYATTEGLDTTSEGAEGTTTVMDTTVGATTTSEYA 1745

Query: 389  DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
                   T+ ++          +    +          ++   I  + S   
Sbjct: 1746 TTEGVDRTSDSVEGTTTVMDTTVGVTTTVKDITTTIGHILTTTIEGTSSAES 1797


>gi|315498435|ref|YP_004087239.1| flagellar basal-body rod protein flgc [Asticcacaulis excentricus
          CB 48]
 gi|315416447|gb|ADU13088.1| flagellar basal-body rod protein FlgC [Asticcacaulis excentricus
          CB 48]
          Length = 140

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 11/62 (17%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI----SPENVTVVT 54
            + A +       +   I  NI NAD+         Y  +  +           V +  
Sbjct: 12 TLSVAASALRAQQARMRIIAENIANADSTGQTPGADPYRGQIPVFEAAKIDGAMGVKLAA 71

Query: 55 QR 56
           R
Sbjct: 72 VR 73


>gi|23092312|gb|AAN08637.1| FlgB [Aeromonas hydrophila]
          Length = 132

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          M++     F   Q   +  S++   +  NI NAD   +  RD   + +
Sbjct: 1  MAISFDKAFGIHQYALSVRSKRAEVLSSNIANADTPGFKARDINFSQA 48


>gi|92114100|ref|YP_574028.1| flagellar basal-body rod protein FlgC [Chromohalobacter salexigens
           DSM 3043]
 gi|91797190|gb|ABE59329.1| flagellar basal-body rod protein FlgC [Chromohalobacter salexigens
           DSM 3043]
          Length = 135

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 21/46 (45%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            + Y     V+  +E+  +I   +SY  + +++  +  ++Q  L  
Sbjct: 87  EDGYVAMPNVDPVDEMVDMIAASRSYQANVEVMNTSKSLMQQTLSI 132


>gi|66046705|ref|YP_236546.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257412|gb|AAY38508.1| Flagellar basal body rod protein:Protein of unknown function
           DUF1078 [Pseudomonas syringae pv. syringae B728a]
 gi|330899405|gb|EGH30824.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330972415|gb|EGH72481.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           aceris str. M302273PT]
 gi|330975978|gb|EGH76044.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 55/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSAGAMVQTGRELDIAVKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVRPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K       D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|83858796|ref|ZP_00952318.1| flagellar basal-body rod protein [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853619|gb|EAP91471.1| flagellar basal-body rod protein [Oceanicaulis alexandrii
          HTCC2633]
          Length = 138

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 7/70 (10%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQR 56
                +       S +   I  N+ NA++         Y R+  +     +        
Sbjct: 6  SETLQISAAGLRAQSSRMRVIAENVANAESTARTPEENPYQRQIPVFESEFDRQVGTELV 65

Query: 57 SENKNMFDKV 66
            N    D+ 
Sbjct: 66 RMNDVALDES 75


>gi|255023259|ref|ZP_05295245.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
           J1-208]
          Length = 251

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/212 (8%), Positives = 44/212 (20%), Gaps = 15/212 (7%)

Query: 12  NICNNASQQFASIVRNIENADNKNYV----------RRDTMTTISPENVTVVTQRSENKN 61
               N  Q       N+ NA    +           R        P    V T     + 
Sbjct: 1   AGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISRNKVNYQNGPVTRQVGTIDYGVRP 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEA-----LKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     S+    R    F                           +       + +
Sbjct: 61  AATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSDQFGFLR 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                 L     +  +   +    +        A+ ++ +    +         ++V D 
Sbjct: 121 TADGANLLSATGEAIQVGQKTSIRAEANGDLYNAETNQYLGRLGTKFVSANQADSLVKDG 180

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
                 +  +  +    + ++   + E   + 
Sbjct: 181 EGRLHVNGINTMNLPAGQGIIQNGVIETSNVD 212


>gi|217972599|ref|YP_002357350.1| flagellar basal body rod protein FlgF [Shewanella baltica OS223]
 gi|217497734|gb|ACK45927.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS223]
          Length = 247

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 30/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +       + A    N+ NA+   +       R          +       S + 
Sbjct: 5   LYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPSRVFAMTESPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L         N   
Sbjct: 65  NFRSGPIKTTGRDLDVAIKGDGWFAVQ------AKDGSEAYTRAGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     + ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVSISQ 141



 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 197 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|126175145|ref|YP_001051294.1| flagellar basal body rod protein FlgF [Shewanella baltica OS155]
 gi|125998350|gb|ABN62425.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS155]
          Length = 247

 Score = 41.2 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 29/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +       + A    N+ NA+   +       R                  S + 
Sbjct: 5   LYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMTESPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L         N   
Sbjct: 65  NFRSGPIKTTGRDLDVAIKGDGWFAVQ------AKDGSEAYTRAGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     + ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVSISQ 141



 Score = 36.9 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 197 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|317181698|dbj|BAJ59482.1| flagellar basal-body rod protein [Helicobacter pylori F57]
          Length = 269

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|308182526|ref|YP_003926653.1| flagellar basal-body rod protein [Helicobacter pylori PeCan4]
 gi|308064711|gb|ADO06603.1| flagellar basal-body rod protein [Helicobacter pylori PeCan4]
          Length = 269

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|304316911|ref|YP_003852056.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778413|gb|ADL68972.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 136

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            + +  +   I  NI N D   + R D     
Sbjct: 15 ALDASELRDEVISNNIANVDTPGFKRSDVNFES 47


>gi|217033353|ref|ZP_03438784.1| hypothetical protein HP9810_9g106 [Helicobacter pylori 98-10]
 gi|216944294|gb|EEC23719.1| hypothetical protein HP9810_9g106 [Helicobacter pylori 98-10]
          Length = 269

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|330721007|gb|EGG99168.1| Flagellar basal-body rod protein FlgF [gamma proteobacterium
           IMCC2047]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 50/217 (23%), Gaps = 16/217 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           +      A       ++  A    N+ N +   +          P        R      
Sbjct: 1   MDKSLYIAMTGAVQNARGTAIHANNLANVNTMGFRSDYAQARAMPVYGETYASRVYAMEE 60

Query: 59  --NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     L    + +      + + A++                  +++       +
Sbjct: 61  NPGTNFAYGTLVETGNELDVAVNGEGWIAVQ------TPDGGEAYTRAGEMKVDSLGILR 114

Query: 117 NLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNL---RRFLSELTV 172
           N +   +       A     +        +    A A+     ++  +       S+L  
Sbjct: 115 NGNGLPVMGQGGPIALPPFERITIGQDGTISIQGAGANPGSLSQVDRIKLVNPDASQLYK 174

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
            ND +  +   +    D          + S +  +  
Sbjct: 175 GNDGLMRQRDGQAAPADAAVGVSAGFLEGSNVNSVEA 211


>gi|302185581|ref|ZP_07262254.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           syringae 642]
 gi|330953725|gb|EGH53985.1| flagellar basal body rod protein FlgF [Pseudomonas syringae Cit 7]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 55/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSAGAMVQTGRELDIAVKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K       D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|197122908|ref|YP_002134859.1| flagellar basal body rod protein [Anaeromyxobacter sp. K]
 gi|196172757|gb|ACG73730.1| flagellar basal body rod protein [Anaeromyxobacter sp. K]
          Length = 235

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 12/43 (27%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +      +       ++Q  ++  N+ NA    +         
Sbjct: 1  MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFES 43


>gi|153938711|ref|YP_001391964.1| flagellar basal body rod protein FlgC [Clostridium botulinum F
          str. Langeland]
 gi|152934607|gb|ABS40105.1| flagellar basal-body rod protein FlgC [Clostridium botulinum F
          str. Langeland]
 gi|295319981|gb|ADG00359.1| flagellar basal-body rod protein FlgC [Clostridium botulinum F
          str. 230613]
          Length = 144

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
                + +  +    +  +I  NI NA          Y R+  + 
Sbjct: 5  FDTMRISASGLSAERLRMDTIASNISNATTTRTENGGPYKRKIAVF 50


>gi|92114097|ref|YP_574025.1| flagellar basal-body rod FlgF [Chromohalobacter salexigens DSM
           3043]
 gi|91797187|gb|ABE59326.1| Flagellar basal-body rod FlgF [Chromohalobacter salexigens DSM
           3043]
          Length = 253

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 42/172 (24%), Gaps = 1/172 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  + A QQ + +  N+ N     +          P           +   
Sbjct: 1   MDRIIYTAGSGASQAMQQQSVVNHNLSNVSTPGFRAELDAMRAVPVQGDGRLATRTSVAA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNLSED 121
                      +             +   A  D            L+   +       E 
Sbjct: 61  TTSGTDFSPGYMNATGRRLDVAMQGDAFLAIQDPQGGEAYTRRGDLQVDADGMLTVKGEP 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           ++G+          +    +   +  + A A+ +    +  L+    +L  +
Sbjct: 121 VMGEQGPIVVPPDAEFSIGADGSISVLEAGANPDEIAPVGRLKLVTPDLQAL 172


>gi|317012196|gb|ADU82804.1| flagellar basal-body rod protein [Helicobacter pylori
          Lithuania75]
          Length = 269

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|153951331|ref|YP_001398131.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938777|gb|ABS43518.1| flagellin family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 750

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/389 (7%), Positives = 116/389 (29%), Gaps = 3/389 (0%)

Query: 92  ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
            ++       + ++   ++ +        D +   + D+  +     +      +K    
Sbjct: 364 QNNGDITKLNNPVTVTINNQQFTIDLKQTDFIKSNMTDSDGKPANGADYDNVYFEKNGNT 423

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
               +   I     + ++ T +++ +   + +    +  ++ +      ++  +  ST+ 
Sbjct: 424 VYGNVSQVIKGSNAYATDSTKLSEVMAGDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVS 483

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
             +      T              +     S  +T +     I          + +    
Sbjct: 484 FKDPKNPNQTISFPITHTDPATGNSGVVTGSNDITYKQLNDIIGMFAADRIPTTTIQANN 543

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
            +        +  + ++    +   +            +S    G+ ++D       +  
Sbjct: 544 GQINNADYTQIQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIGISLSDSQSGQFPQPP 603

Query: 332 QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
              +  +   P +  + +        +   + ++ ++       N   D  + +     +
Sbjct: 604 YTTTAQVQNGPNFSFSANNSLVIDEPNVDIIKDLDSMIDAVLKGNMRADGNSADPRNTGM 663

Query: 392 AGINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            G    +  L ++       +    +    ++ +   +  ++    SN + V+  E +  
Sbjct: 664 QGALERLDHLADHVSKLNTTMGAYHNTIDGVNTRVNFLSVNVQSIKSNVIDVDYGEAMMN 723

Query: 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           L++V+ +Y  S K      ++  +LL  +
Sbjct: 724 LMQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|28869143|ref|NP_791762.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967580|ref|ZP_03395728.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv.
           tomato T1]
 gi|301385715|ref|ZP_07234133.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060072|ref|ZP_07251613.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           tomato K40]
 gi|302134831|ref|ZP_07260821.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852383|gb|AAO55457.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927881|gb|EEB61428.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv.
           tomato T1]
 gi|331017023|gb|EGH97079.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 55/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSGGAMVETGRELDIAIKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K       D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKSGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|224370761|ref|YP_002604925.1| FlgF [Desulfobacterium autotrophicum HRM2]
 gi|223693478|gb|ACN16761.1| FlgF [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/208 (7%), Positives = 54/208 (25%), Gaps = 18/208 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSS 72
                 ++      ++ N D   + +                + + N ++    +    +
Sbjct: 12  GLR-QERKLEVTSNHLANVDTAGFKKDVVSFDSMF-------KAALNTDLTQAGVKHTGN 63

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
            +             E     +  +            + ++   + + D +         
Sbjct: 64  PLDLALS-------DEGFFKVETPSGVRYTRNGVFSLNADNVLVDQNGDAVLGQNGPITI 116

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
                      E++   A  D ++++   +    L +    N      T  +    +   
Sbjct: 117 TAGTVEINGTGEIRGDGAVID-QLDIVTFDTLDLLQKEGANNFVFTGDTNLEVAPANVGV 175

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVY 220
            +  L  ++S +  +  +V   +   +Y
Sbjct: 176 VQGSL--ELSSVKAVEEMVNMIDHHRMY 201


>gi|148270379|ref|YP_001244839.1| hypothetical protein Tpet_1249 [Thermotoga petrophila RKU-1]
 gi|147735923|gb|ABQ47263.1| protein of unknown function DUF1078 domain protein [Thermotoga
           petrophila RKU-1]
          Length = 249

 Score = 41.2 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 38/170 (22%), Gaps = 15/170 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR---------RDTMTTISPENVTVV 53
           +      A         +   I  ++ N D   Y +         R  +    P+ V   
Sbjct: 1   MTRGIYNAAMGMLVDMAKLDRIANDLANVDTAGYKQDREAFRAYLRREVFRQEPDPVESR 60

Query: 54  TQRS-----ENKNMFDKVLHA-HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
           T++      E   + D+V        + +  +        E     +           + 
Sbjct: 61  TKKVPIGPLEYATVLDEVRTDLSQGPVEKTDVPYHLAINGEGFFRIEFNGGEYYTRNGEF 120

Query: 108 RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
             + E Y        L     +               V+    +    I 
Sbjct: 121 TVNSEGYIVTNYGGYLLDENGERVRFFDDFTVDEEGYVRDAYGNIVTRIG 170



 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 13/136 (9%)

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             + + +F  N +             ++  +   FD    ++    + +   N +  +  
Sbjct: 113 YYTRNGEFTVNSEGYIVTNYGGYLLDENGERVRFFD-DFTVDEEGYVRDAYGNIVTRIGV 171

Query: 414 NRSDSHDLHMKSQVVFN----------HISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
              ++ +       +F            I + Y     V+  + +  +I   + Y +S +
Sbjct: 172 YNLENPE--KFGNTLFTGENPSPSENFRIMQGYVEKSNVDALKAMVDMISAMRHYELSQR 229

Query: 464 LIMFTDKMLQTLLEGV 479
            +   D++   L+  +
Sbjct: 230 AVTVNDELNGKLINSL 245


>gi|254419855|ref|ZP_05033579.1| conserved domain protein [Brevundimonas sp. BAL3]
 gi|196186032|gb|EDX81008.1| conserved domain protein [Brevundimonas sp. BAL3]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/154 (5%), Positives = 30/154 (19%), Gaps = 5/154 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-SPENVTVVTQRSENKN 61
           +        +      ++   +  N+ NAD   +     M      +     + R     
Sbjct: 1   MENAAYIGLSRQMTLRRELDIVANNVANADTTGFKVEQLMVGTEVGQRARNDSIRPSASF 60

Query: 62  MFDKVLHAHSSAIGQQRLLQ----SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
           + D  +             +    +        +  D                 E     
Sbjct: 61  VLDNGVGRDFGQGSMSETGRPLDFAIAGEGAFFTVRDGAAGEAYTRDGAFTMDPEGRLTT 120

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                +     +   +      +   +    ++ 
Sbjct: 121 KQGQAVLGGGAEIVLDPALGAPSVGADGTITQSG 154



 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I +       VN   E++ LI++ ++Y    ++I  T+ +
Sbjct: 194 QIHQGSLEASNVNSLTEITNLIEISRAYESITRMIENTNDL 234


>gi|78355402|ref|YP_386851.1| flagellar basal-body rod protein FlgC [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
 gi|78217807|gb|ABB37156.1| flagellar basal-body rod protein FlgC [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
          Length = 146

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK---N---YVRRDTMTTIS 46
          M  +   +   +  +           N+ NA          Y R+  +   +
Sbjct: 1  MDFMTALDIGASALSAERTSMNITSMNLANAKTTRTIGGGPYRRKAVVMAAT 52



 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           N+ EE++ L+  ++ Y  S   I     M    LE  +
Sbjct: 108 NVVEEMANLMTSQRGYQASVSTIEAVKSMYTKALEIGR 145


>gi|22126392|ref|NP_669815.1| flagellar basal body rod protein FlgC [Yersinia pestis KIM 10]
 gi|45441411|ref|NP_992950.1| flagellar basal body rod protein FlgC [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51596009|ref|YP_070200.1| flagellar basal body rod protein FlgC [Yersinia
          pseudotuberculosis IP 32953]
 gi|108807171|ref|YP_651087.1| flagellar basal body rod protein FlgC [Yersinia pestis Antiqua]
 gi|108812485|ref|YP_648252.1| flagellar basal body rod protein FlgC [Yersinia pestis Nepal516]
 gi|145598612|ref|YP_001162688.1| flagellar basal body rod protein FlgC [Yersinia pestis Pestoides
          F]
 gi|149366253|ref|ZP_01888288.1| flagellar basal-body rod protein FlgC [Yersinia pestis CA88-4125]
 gi|153947032|ref|YP_001401292.1| flagellar basal body rod protein FlgC [Yersinia
          pseudotuberculosis IP 31758]
 gi|162420507|ref|YP_001606471.1| flagellar basal body rod protein FlgC [Yersinia pestis Angola]
 gi|165926046|ref|ZP_02221878.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165938792|ref|ZP_02227347.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166010857|ref|ZP_02231755.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211044|ref|ZP_02237079.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167401147|ref|ZP_02306650.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167420240|ref|ZP_02311993.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167425758|ref|ZP_02317511.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167469718|ref|ZP_02334422.1| flagellar basal-body rod protein FlgC [Yersinia pestis FV-1]
 gi|170024649|ref|YP_001721154.1| flagellar basal body rod protein FlgC [Yersinia
          pseudotuberculosis YPIII]
 gi|186895112|ref|YP_001872224.1| flagellar basal body rod protein FlgC [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928920|ref|YP_002346795.1| flagellar basal body rod protein FlgC [Yersinia pestis CO92]
 gi|229896240|ref|ZP_04511410.1| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides
          A]
 gi|229897175|ref|ZP_04512331.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229897901|ref|ZP_04513052.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229902867|ref|ZP_04517984.1| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516]
 gi|270486647|ref|ZP_06203721.1| flagellar basal-body rod protein FlgC [Yersinia pestis KIM D27]
 gi|294504032|ref|YP_003568094.1| flagellar basal body rod protein [Yersinia pestis Z176003]
 gi|21959379|gb|AAM86066.1|AE013854_2 cell-proximal portion of basal-body rod protein [Yersinia pestis
          KIM 10]
 gi|45436272|gb|AAS61827.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51589291|emb|CAH20912.1| flagellar basal-body rod protein FlgC [Yersinia
          pseudotuberculosis IP 32953]
 gi|108776133|gb|ABG18652.1| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516]
 gi|108779084|gb|ABG13142.1| flagellar basal-body rod protein FlgC [Yersinia pestis Antiqua]
 gi|115347531|emb|CAL20440.1| flagellar basal-body rod protein FlgC [Yersinia pestis CO92]
 gi|145210308|gb|ABP39715.1| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides
          F]
 gi|149292666|gb|EDM42740.1| flagellar basal-body rod protein FlgC [Yersinia pestis CA88-4125]
 gi|152958527|gb|ABS45988.1| flagellar basal-body rod protein FlgC [Yersinia
          pseudotuberculosis IP 31758]
 gi|162353322|gb|ABX87270.1| flagellar basal-body rod protein FlgC [Yersinia pestis Angola]
 gi|165913406|gb|EDR32028.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165922250|gb|EDR39427.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165990201|gb|EDR42502.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166208224|gb|EDR52704.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166961935|gb|EDR57956.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167049536|gb|EDR60944.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167055157|gb|EDR64954.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751183|gb|ACA68701.1| flagellar basal-body rod protein FlgC [Yersinia
          pseudotuberculosis YPIII]
 gi|186698138|gb|ACC88767.1| flagellar basal-body rod protein FlgC [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680314|gb|EEO76413.1| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516]
 gi|229688942|gb|EEO81007.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229693512|gb|EEO83561.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229701163|gb|EEO89192.1| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides
          A]
 gi|262361782|gb|ACY58503.1| flagellar basal body rod protein [Yersinia pestis D106004]
 gi|262366082|gb|ACY62639.1| flagellar basal body rod protein [Yersinia pestis D182038]
 gi|270335151|gb|EFA45928.1| flagellar basal-body rod protein FlgC [Yersinia pestis KIM D27]
 gi|294354491|gb|ADE64832.1| flagellar basal body rod protein [Yersinia pestis Z176003]
 gi|320015469|gb|ADV99040.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar
          Medievalis str. Harbin 35]
          Length = 134

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NA          Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRMNVSASNLANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQIVDD 70


>gi|323495376|ref|ZP_08100453.1| flagellar basal body rod protein FlgF [Vibrio brasiliensis LMG
           20546]
 gi|323310299|gb|EGA63486.1| flagellar basal body rod protein FlgF [Vibrio brasiliensis LMG
           20546]
          Length = 249

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 51/212 (24%), Gaps = 7/212 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY-NNSPTHYISKLRDSLESYS 115
               N     +      +      Q + ++ +    +    N +    ++ L  S     
Sbjct: 61  RPGHNFQQGSVITTGRDLDVTIQGQGWISVLDKTGQEGLTRNGNLKVDVNGLLVSGNGNL 120

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
                       I  ++  + N  T +   Q   ADA + ++          S    VN 
Sbjct: 121 VLGETGAPITLPIPVSKVEIGNDGTISVVPQGAPADAIEIVDRIKLTSTNNQSLFKDVNG 180

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
             + K  +     D   +      + S +  I
Sbjct: 181 LFRAKDPNAAYEADADVKLLTGAIEGSNVNAI 212


>gi|300117306|ref|ZP_07055096.1| flagellar basal body rod protein FlgG [Bacillus cereus SJ1]
 gi|298725141|gb|EFI65793.1| flagellar basal body rod protein FlgG [Bacillus cereus SJ1]
          Length = 257

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 49/222 (22%), Gaps = 18/222 (8%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPE 48
                      N  Q+      N+ NA    +                 R D   T    
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGS 61

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
               V   + + N+    +   +SA      L    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
              ++    K  T ++ +  D  +    +   + E   +   
Sbjct: 180 NNRLMQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMT 221



 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 203 NGVGTVKNYMLENSNVDMTKEMADLMTDQKMISASQRVMTSFDKIYE 249


>gi|54307268|ref|YP_128288.1| FlgC flagellar basal-body rod protein [Photobacterium profundum
          SS9]
 gi|46911688|emb|CAG18486.1| Hypothetical FlgC flagellar basal-body rod protein
          [Photobacterium profundum SS9]
          Length = 138

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46
          MS   +++ A +  +  + +  ++  N+ NAD         Y  +  + +  
Sbjct: 1  MSFSTIYDIAGSAMSAQTIRLNTVASNLANADVVSGSDKTGYHAKRPVFSTV 52


>gi|332162900|ref|YP_004299477.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667130|gb|ADZ43774.1| Flagellar basal-body rod protein FlgF [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863350|emb|CBX73473.1| hypothetical protein YEW_ES20680 [Yersinia enterocolitica W22703]
          Length = 243

 Score = 41.2 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 49/208 (23%), Gaps = 3/208 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N + + + R D     + +              
Sbjct: 1   MDKLLYTAVSGANRSLTQQQIHANNLSNVNTQGF-RADLERATATQVPGGGYNSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +   + ++ +             + A             ++    +         +
Sbjct: 60  QNAGVDMTAGSLQETGRELDVAIKDRGLIAVLSGGREVYTRNGQMEVGPDGDLTINGMPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELTVVNDAIKFK 180
           LG                    +  I      +   E+  ++     +     N+     
Sbjct: 120 LGDGGAIVLPAYSAVSVADDGTIAIIPQAGGIKTPAEVDRIKLVDIPANQLSKNNRGLLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIS 208
                 A D   Q      + S I  IS
Sbjct: 180 NRRGAAARDENVQLVSKHLESSNISAIS 207


>gi|294013083|ref|YP_003546543.1| flagellar basal-body rod protein FlgB [Sphingobium japonicum
          UT26S]
 gi|292676413|dbj|BAI97931.1| flagellar basal-body rod protein FlgB [Sphingobium japonicum
          UT26S]
          Length = 122

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 1  MSL-LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVV 53
          MSL   +F          SQ+ + +  NI NA    Y  RD     +       +  +  
Sbjct: 1  MSLEDGLFGIHGKALALRSQRLSLLASNIANASTPGYKARDIDFESALKEATTRQGKSPA 60

Query: 54 TQRSENKNMFDKVLHAHSSAIGQQRLLQS 82
                 +     +   SS  G    L +
Sbjct: 61 DVSQAVDDAMGYRVPLQSSLDGNTVELST 89


>gi|260772272|ref|ZP_05881188.1| flagellar basal-body rod protein FlgC [Vibrio metschnikovii CIP
          69.14]
 gi|260611411|gb|EEX36614.1| flagellar basal-body rod protein FlgC [Vibrio metschnikovii CIP
          69.14]
          Length = 138

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+      + Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKETYKARHAVFGA 51



 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|254516987|ref|ZP_05129045.1| flagellar basal-body rod protein FlgC [gamma proteobacterium
          NOR5-3]
 gi|219674492|gb|EED30860.1| flagellar basal-body rod protein FlgC [gamma proteobacterium
          NOR5-3]
          Length = 140

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL      A    +  SQ+  +I  N+ NA+
Sbjct: 1  MSLFDAIGVAATSLDAQSQRLNTISSNLANAN 32


>gi|206603156|gb|EDZ39636.1| Flagellar basal-body rod protein FlgC [Leptospirillum sp. Group
          II '5-way CG']
          Length = 145

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 6/55 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTISPEN 49
          M        A         +   +  N+ N+ +        + RRD +       
Sbjct: 1  MGFSDAMRIAAGGMEAERVRMNVLSGNLANSQSVHGNPRGVFERRDVIFAAVRPG 55


>gi|217976223|ref|YP_002360370.1| flagellar basal body rod protein FlgC [Methylocella silvestris
          BL2]
 gi|217501599|gb|ACK49008.1| flagellar basal-body rod protein FlgC [Methylocella silvestris
          BL2]
          Length = 140

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          L A    A +     S +   +  N+ NA           Y R+      
Sbjct: 5  LEASLRVAGSGLEAQSARLRIVSENLANAQSTGSTPGADPYARKTITFAS 54


>gi|330961200|gb|EGH61460.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 56/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSGGAMVQTGRELDIAVKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K      +D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKTGRPADVDATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|258511369|ref|YP_003184803.1| flagellar basal-body rod protein FlgC [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478095|gb|ACV58414.1| flagellar basal-body rod protein FlgC [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 144

 Score = 41.2 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 8/31 (25%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK 34
              N + +           I  NI N +  
Sbjct: 4  NTSMNISASGLAANQLWLNVIANNIANVNTT 34



 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               Y  T  VNL  ++  LI+  ++Y  +        +M
Sbjct: 96  AVNGYVETSNVNLTTQMVDLIQATRAYQANATAFDAAKQM 135


>gi|319781683|ref|YP_004141159.1| flagellar basal-body rod protein FlgC [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|317167571|gb|ADV11109.1| flagellar basal-body rod protein FlgC [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 138

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 13/73 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT------TISPEN 49
          L A    A +     S++   +  N+ NA +         Y R+                
Sbjct: 4  LTAALKVAASGLGAQSERLRVVSENLANAQSTGTAPGSDPYRRKTISFVSELDRASGSST 63

Query: 50 VTVVTQRSENKNM 62
          V V +   +  + 
Sbjct: 64 VAVNSIDRDPSDF 76


>gi|288962707|ref|YP_003453001.1| flagellar basal-body rod protein [Azospirillum sp. B510]
 gi|288914973|dbj|BAI76457.1| flagellar basal-body rod protein [Azospirillum sp. B510]
          Length = 139

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 8/62 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISP-ENVTVVT 54
          L A    A       S +   +  N+ NAD+         Y R+           V    
Sbjct: 6  LGATLKIAGAGLQAQSTRLRVVAENLANADSTATAKGGDPYRRKTVSFDSVMDRGVGAEL 65

Query: 55 QR 56
           R
Sbjct: 66 VR 67


>gi|77463651|ref|YP_353155.1| flagellar proximal rod protein FlgF [Rhodobacter sphaeroides 2.4.1]
 gi|77388069|gb|ABA79254.1| flagellar proximal rod protein FlgF [Rhodobacter sphaeroides 2.4.1]
          Length = 251

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       VN  EEL   I++++++ ++ ++I    ++
Sbjct: 200 VLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSAKEL 239


>gi|121602485|ref|YP_989402.1| flagellar basal body rod protein FlgC [Bartonella bacilliformis
          KC583]
 gi|120614662|gb|ABM45263.1| flagellar basal-body rod protein FlgC [Bartonella bacilliformis
          KC583]
          Length = 137

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 7/44 (15%)

Query: 10 AQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
          +       S +   I  N+ NA++         Y R+      +
Sbjct: 12 STTGLGAQSTRLRIIAENLANANSTGRAPGAAPYRRKTVSFETA 55


>gi|15642198|ref|NP_231830.1| flagellar basal body rod protein FlgC [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121586290|ref|ZP_01676080.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 2740-80]
 gi|121726545|ref|ZP_01679794.1| flagellar basal-body rod protein FlgC [Vibrio cholerae V52]
 gi|147675208|ref|YP_001217716.1| flagellar basal body rod protein FlgC [Vibrio cholerae O395]
 gi|153817070|ref|ZP_01969737.1| flagellar basal-body rod protein FlgC [Vibrio cholerae NCTC 8457]
 gi|153820804|ref|ZP_01973471.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33]
 gi|227082323|ref|YP_002810874.1| flagellar basal-body rod protein FlgC [Vibrio cholerae M66-2]
 gi|229507724|ref|ZP_04397229.1| flagellar basal-body rod protein FlgC [Vibrio cholerae BX 330286]
 gi|229512081|ref|ZP_04401560.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33]
 gi|229519217|ref|ZP_04408660.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC9]
 gi|229607228|ref|YP_002877876.1| flagellar basal body rod protein FlgC [Vibrio cholerae MJ-1236]
 gi|254849328|ref|ZP_05238678.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MO10]
 gi|255747102|ref|ZP_05421047.1| flagellar basal-body rod protein FlgC [Vibrio cholera CIRS 101]
 gi|262161354|ref|ZP_06030464.1| flagellar basal-body rod protein FlgC [Vibrio cholerae INDRE
          91/1]
 gi|262167775|ref|ZP_06035477.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC27]
 gi|298500423|ref|ZP_07010228.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MAK 757]
 gi|9656755|gb|AAF95344.1| flagellar basal-body rod protein FlgC [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121549556|gb|EAX59582.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 2740-80]
 gi|121630998|gb|EAX63377.1| flagellar basal-body rod protein FlgC [Vibrio cholerae V52]
 gi|126512338|gb|EAZ74932.1| flagellar basal-body rod protein FlgC [Vibrio cholerae NCTC 8457]
 gi|126521596|gb|EAZ78819.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33]
 gi|146317091|gb|ABQ21630.1| flagellar basal-body rod protein FlgC [Vibrio cholerae O395]
 gi|227010211|gb|ACP06423.1| flagellar basal-body rod protein FlgC [Vibrio cholerae M66-2]
 gi|227014095|gb|ACP10305.1| flagellar basal-body rod protein FlgC [Vibrio cholerae O395]
 gi|229343906|gb|EEO08881.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC9]
 gi|229352046|gb|EEO16987.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33]
 gi|229355229|gb|EEO20150.1| flagellar basal-body rod protein FlgC [Vibrio cholerae BX 330286]
 gi|229369883|gb|ACQ60306.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MJ-1236]
 gi|254845033|gb|EET23447.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MO10]
 gi|255735504|gb|EET90904.1| flagellar basal-body rod protein FlgC [Vibrio cholera CIRS 101]
 gi|262023840|gb|EEY42539.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC27]
 gi|262028665|gb|EEY47319.1| flagellar basal-body rod protein FlgC [Vibrio cholerae INDRE
          91/1]
 gi|297541116|gb|EFH77170.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MAK 757]
          Length = 138

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL +VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFSVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 98  SNVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|15596278|ref|NP_249772.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAO1]
 gi|107100526|ref|ZP_01364444.1| hypothetical protein PaerPA_01001551 [Pseudomonas aeruginosa PACS2]
 gi|116049010|ref|YP_792188.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892955|ref|YP_002441824.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa
           LESB58]
 gi|254234217|ref|ZP_04927540.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa
           C3719]
 gi|254239439|ref|ZP_04932761.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 2192]
 gi|296390555|ref|ZP_06880030.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAb1]
 gi|313106036|ref|ZP_07792295.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa
           39016]
 gi|9946997|gb|AAG04470.1|AE004539_12 flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PAO1]
 gi|115584231|gb|ABJ10246.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166148|gb|EAZ51659.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa
           C3719]
 gi|126192817|gb|EAZ56880.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 2192]
 gi|218773183|emb|CAW28995.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa
           LESB58]
 gi|310878797|gb|EFQ37391.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa
           39016]
          Length = 249

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/238 (6%), Positives = 52/238 (21%), Gaps = 16/238 (6%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSENK 60
              + +  +  +    +   N+ N     +       R   +   S              
Sbjct: 5   LYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGT 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     L    + +        F A++          +      + +        +    
Sbjct: 65  DFSHGSLQETGNELDIAIDGDGFVAVQ------APDGSEAYVRTAGMHIDALGMLRTGDG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN----LRRFLSELTVVNDA 176
             +       A    +           IRA  +    + + +    +   L ++    D 
Sbjct: 119 LPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQMEKGTDG 178

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           +        +     D    ++    E   ++ +      + +       +      +
Sbjct: 179 LLHYKPQPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAE 236


>gi|323498419|ref|ZP_08103415.1| flagellar basal body rod protein FlgF [Vibrio sinaloensis DSM
           21326]
 gi|323316492|gb|EGA69507.1| flagellar basal body rod protein FlgF [Vibrio sinaloensis DSM
           21326]
          Length = 249

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/202 (5%), Positives = 42/202 (20%), Gaps = 15/202 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +        + A+ +                  L+  +     
Sbjct: 61  RPGHNFQQGSVITTGRDLDVTIEGNGWIAVLDK------SGKEGLTRNGNLKVDVNGLLV 114

Query: 117 NLSEDILGKTVIDNAE---EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
           + + +++             + +    +   +  +   A  +    +  ++   +    +
Sbjct: 115 SGNGNLVIGETGGPITLPIPLSKVEIGTDGTISVVPQGAPADAIEVVDRIKLTNTNNQSL 174

Query: 174 NDAIKFKTASKHDAHDFLDQRD 195
              +     +K     +    D
Sbjct: 175 FKDVNGLFRAKDPNAAYEADAD 196



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         VN   E++ LI +++ + +  K++   ++M
Sbjct: 199 LLTGAIEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|311694362|gb|ADP97235.1| flagellar basal-body rod FlgF [marine bacterium HP15]
          Length = 250

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/139 (5%), Positives = 26/139 (18%), Gaps = 20/139 (14%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTV 52
           +        +                  N+ N     +       R   +          
Sbjct: 1   MDKALYIGMSGAKQNMLAQQAH----ANNLANVSTTGFKKDFAQARSMPVYGEHHPTRAY 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
                   ++    L      +      + + A++                   L+  + 
Sbjct: 57  AMTERPGTDLSAGALMETGRKLDVAVEGEGWLAIQN------DQGEEVFTRSGSLQVDVN 110

Query: 113 SYSKNLSEDILGKTVIDNA 131
              +  + +++       A
Sbjct: 111 GLVRLANGELVLGNGGPVA 129



 Score = 37.7 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 20/41 (48%)

Query: 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
             ++  +  +  VN  EE+   +++ + Y +  K++   ++
Sbjct: 198 QRVASGFLESSNVNAVEEMISNLQLSRQYEMQVKVMTTANE 238


>gi|270487672|ref|ZP_06204746.1| fagellar hook-basal body protein [Yersinia pestis KIM D27]
 gi|270336176|gb|EFA46953.1| fagellar hook-basal body protein [Yersinia pestis KIM D27]
          Length = 193

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/167 (8%), Positives = 44/167 (26%), Gaps = 1/167 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N++ + + R D     + + +            
Sbjct: 1   MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGF-RADLEKATATQVMGGGYSSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +    +++ +           + + A             ++  S E         +
Sbjct: 60  QNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGALTINGLPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           LG                    +  I      +++   S    ++S 
Sbjct: 120 LGDGGPIVLPPYSALSIADDGTIAIIPQRGGSKLQKRSSASNWWISP 166


>gi|153831599|ref|ZP_01984266.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01]
 gi|156976142|ref|YP_001447048.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116]
 gi|148872109|gb|EDL70926.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01]
 gi|156527736|gb|ABU72821.1| hypothetical protein VIBHAR_04913 [Vibrio harveyi ATCC BAA-1116]
          Length = 243

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 61/255 (23%), Gaps = 22/255 (8%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      VR   +     +  T+
Sbjct: 1   MDSLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERVRSVELQGAGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S         +      +    + + +  ++          N        ++    
Sbjct: 57  VVTNSAATRFDSGDIMKTGRPLDVAIMGEGYLTVE------TPIGNEAYTRAGNIKVDTF 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                    ++G+       +  +   +    V  I      E+E+    + +       
Sbjct: 111 GAMSINGFPVVGENGPIVVPDFQKIEISERGRVSVIPPGGGAEVEVGTLKMVKPAINQLQ 170

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
                   +          D+   L  +  E   +S I    + M +  +    +     
Sbjct: 171 KESDSLLHSVDGVPFPA--DETVQLSPEHIEGSNVSAIDELLSVMSLTRNFEMQVRMMKT 228

Query: 233 RDINFEKMNSYTVTS 247
            +   +  N      
Sbjct: 229 AETLAQAGNKLMAAR 243


>gi|269960117|ref|ZP_06174493.1| Flagellar basal-body rod protein flgF [Vibrio harveyi 1DA3]
 gi|269835088|gb|EEZ89171.1| Flagellar basal-body rod protein flgF [Vibrio harveyi 1DA3]
          Length = 243

 Score = 41.2 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/122 (9%), Positives = 33/122 (27%), Gaps = 14/122 (11%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      VR   +     +  T+
Sbjct: 1   MDSLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERVRSVELQGAGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S         +      +    + + +  ++  +  + +         +    S+ 
Sbjct: 57  VVTNSAATRFDSGDIMKTGRPLDVAIMGEGYLTVETPIGNEAYTRAGNIKVDTFGAMSIN 116

Query: 113 SY 114
            +
Sbjct: 117 GF 118


>gi|251789166|ref|YP_003003887.1| flagellar basal body rod protein FlgC [Dickeya zeae Ech1591]
 gi|271500064|ref|YP_003333089.1| flagellar basal-body rod protein FlgC [Dickeya dadantii Ech586]
 gi|307131611|ref|YP_003883627.1| flagellar basal-body rod protein flgC [Dickeya dadantii 3937]
 gi|247537787|gb|ACT06408.1| flagellar basal-body rod protein FlgC [Dickeya zeae Ech1591]
 gi|270343619|gb|ACZ76384.1| flagellar basal-body rod protein FlgC [Dickeya dadantii Ech586]
 gi|306529140|gb|ADM99070.1| Flagellar basal-body rod protein flgC [Dickeya dadantii 3937]
          Length = 134

 Score = 41.2 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          MSLL +F+ + +  +  SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MSLLNIFDISGSALSAQSQRLNVSASNLANADSVTGPDGQPYRAKQVVFEVDAAPGQATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVAKV 67


>gi|71735751|ref|YP_275560.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627765|ref|ZP_06460719.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651644|ref|ZP_06482987.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|71556304|gb|AAZ35515.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325095|gb|EFW81164.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329354|gb|EFW85347.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866424|gb|EGH01133.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330880528|gb|EGH14677.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889082|gb|EGH21743.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330986470|gb|EGH84573.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011044|gb|EGH91100.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 55/239 (23%), Gaps = 13/239 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +  +   A +  +  +    +   N+ N     +       R   +      +       
Sbjct: 1   MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSMPVFGEVMPSRAYAMSE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        + A++                 S +        +
Sbjct: 61  RPGTDFSAGAMVETGRELDIAVKGDGWIAVQ------TPDGGEAYTRSSGMNIDALGVLR 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVND 175
           + S   +       A    Q     A     IR+     ++  ++  ++    +L  +  
Sbjct: 115 DGSGLPVMGNGGPIAVPPQQQIEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKTMEK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                  +K       D    +     +   ++ +    + + +       +      +
Sbjct: 175 GPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233


>gi|108562780|ref|YP_627096.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1]
 gi|107836553|gb|ABF84422.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1]
          Length = 269

 Score = 41.2 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 38/194 (19%), Gaps = 15/194 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  A         +      N+ N +   + R D +T                   
Sbjct: 1   MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLR-------------- 46

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +          Q +    +     +              +     +       L+   
Sbjct: 47  LYQQYREQLPLEDQTKASAKYLNR-NLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPN 105

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L   +  N           + +        +    L  S L      + + +  I+    
Sbjct: 106 LYFAIQTNEGVAYTRDGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVDQN 165

Query: 183 SKHDAHDFLDQRDV 196
                 D   Q   
Sbjct: 166 GGITFRDNEAQIQA 179


>gi|170748109|ref|YP_001754369.1| flagellar basal body rod protein FlgC [Methylobacterium
          radiotolerans JCM 2831]
 gi|170654631|gb|ACB23686.1| flagellar basal-body rod protein FlgC [Methylobacterium
          radiotolerans JCM 2831]
          Length = 138

 Score = 41.2 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 10/63 (15%)

Query: 9  KAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS---PENVTVVTQRSE 58
           A +     S++   I  NI NA +         Y R+      +         V  R  
Sbjct: 11 IAGSGMEAQSERLRVIAENIANARSTGQTAGSDPYTRKTITFRTALDRASGTAAVAIRQI 70

Query: 59 NKN 61
           ++
Sbjct: 71 GED 73


>gi|238785499|ref|ZP_04629482.1| Flagellar basal-body rod protein flgC [Yersinia bercovieri ATCC
          43970]
 gi|238799105|ref|ZP_04642561.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC
          43969]
 gi|238713601|gb|EEQ05630.1| Flagellar basal-body rod protein flgC [Yersinia bercovieri ATCC
          43970]
 gi|238717052|gb|EEQ08912.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC
          43969]
          Length = 134

 Score = 41.2 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NA          Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSQVVDD 70


>gi|149182500|ref|ZP_01860973.1| flagellar basal-body rod protein B [Bacillus sp. SG-1]
 gi|148849760|gb|EDL63937.1| flagellar basal-body rod protein B [Bacillus sp. SG-1]
          Length = 129

 Score = 41.2 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 1  MSLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          MSL +      +N  N +S +   I +NI N D  NY  +      
Sbjct: 1  MSLFSSTIQSLENGLNYSSAKQKVISQNIANVDTPNYKAKSISFKD 46


>gi|317013797|gb|ADU81233.1| flagellar basal-body rod protein [Helicobacter pylori
          Gambia94/24]
          Length = 269

 Score = 41.2 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|319405396|emb|CBI79015.1| Flagellar basal-body rod protein flgF [Bartonella sp. AR 15-3]
          Length = 244

 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/206 (6%), Positives = 46/206 (22%), Gaps = 1/206 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV-TVVTQRSENKN 61
           +        +      ++  +I +N+ N +   +            +V           +
Sbjct: 1   MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLVSSVAHEQGDHVFFTS 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                +     ++ Q           +   +             ++  + E    +++  
Sbjct: 61  AGKGYISTDRGSLIQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTGL 120

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                     +               I  D     ++ +   +         N ++    
Sbjct: 121 PFLDEGGAPIQLNPAGGMLRIVTDGSIYQDNVFVGKIGLFQFQPGTQLRYGPNSSVIPDR 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGI 207
           A+        D       + S + G+
Sbjct: 181 AAFQSEEGNGDGVVQGYIESSNVNGV 206


>gi|149188067|ref|ZP_01866362.1| flagellar basal body rod protein FlgF [Vibrio shilonii AK1]
 gi|148838055|gb|EDL54997.1| flagellar basal body rod protein FlgF [Vibrio shilonii AK1]
          Length = 249

 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 24/125 (19%), Gaps = 12/125 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      + +      Q       N+ NA    +       R          +       
Sbjct: 1   MDRALYLSMSGAKQNMQALQLRANNLANASTPGFRADLAQARSMQAYGEGMPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               N     +      +      Q + ++ +                  LR        
Sbjct: 61  RPGHNFEQGSVVTTGRDLDVTIEGQGWISVLDK------NGKEGLTRNGSLRVDQNGLLV 114

Query: 117 NLSED 121
           N + +
Sbjct: 115 NGNGN 119



 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         VN   E++ LI +++ + +  KL+   + M
Sbjct: 198 QLMTGAIEGSNVNAVGEMTSLIDLQRQFEMQVKLMSTAEDM 238


>gi|86157778|ref|YP_464563.1| flagellar basal body rod protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85774289|gb|ABC81126.1| flagellar basal body rod protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 235

 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 12/43 (27%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +      +       ++Q  ++  N+ NA    +         
Sbjct: 1  MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFES 43


>gi|104782841|ref|YP_609339.1| flagellar basal body rod protein FlgF [Pseudomonas entomophila L48]
 gi|95111828|emb|CAK16552.1| flagellar basal-body rod protein FlgF [Pseudomonas entomophila L48]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 52/237 (21%), Gaps = 17/237 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQKAHANNLANVSTNGFQRDLEQARSMPVFGDSFPARAFAMSERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +     L      +        F A++          +        L        +  
Sbjct: 63  ATDFRAGPLVETGRELDVAVSGDGFMAVQ------APDGSEAYVRTGSLNIDALGVLRAG 116

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q           IRA   D  +  E+  ++    ++  +    
Sbjct: 117 NGMAVMGNGGPIAIPPQQKVEVGDDGTISIRAMGEDPRVMAEVDRIKLVNPDIKNMTKGP 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                +K+      D    ++    E   ++ +    + + +       +      +
Sbjct: 177 DGLIHTKNGQPADADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMKAAE 233


>gi|117923582|ref|YP_864199.1| flagellar basal-body rod protein FlgB [Magnetococcus sp. MC-1]
 gi|117607338|gb|ABK42793.1| flagellar basal-body rod protein FlgB [Magnetococcus sp. MC-1]
          Length = 137

 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 8/51 (15%)

Query: 1  MSLLAVFNKAQNI-CNNA-----SQQFASIVRNIENADNKNYVRRDTMTTI 45
          MS   +     +            ++   I  NI NAD   Y  R      
Sbjct: 1  MSGFGLL--GNSGAFKANLLDLRQRRQDIIAANIANADTPGYKARRLSFEE 49


>gi|296135672|ref|YP_003642914.1| flagellar basal-body rod protein FlgF [Thiomonas intermedia K12]
 gi|295795794|gb|ADG30584.1| flagellar basal-body rod protein FlgF [Thiomonas intermedia K12]
          Length = 245

 Score = 41.2 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 29/128 (22%), Gaps = 12/128 (9%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV------VTQRSE 58
                A        +Q A    N+ N +   Y          P            T +  
Sbjct: 2   DTLWIAATGARAVLRQQAVTTNNLANVNTTGYRGEQAQFRALPVYGNALPTSAYTTVQGN 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + N+ +  ++     +        + A++          ++       L+ S        
Sbjct: 62  SANLQEGPINHTGRNLDVAIRGSGWIAVQ------APNGDTAYTRNGDLQVSASGILSTS 115

Query: 119 SEDILGKT 126
               +   
Sbjct: 116 DGRPVLGQ 123


>gi|99082801|ref|YP_614955.1| flagellar basal body rod protein FlgF [Ruegeria sp. TM1040]
 gi|99039081|gb|ABF65693.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040]
          Length = 238

 Score = 41.2 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/121 (7%), Positives = 24/121 (19%), Gaps = 4/121 (3%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           Q+       +  ++  NI N+    Y     + +   ++       S       +     
Sbjct: 12  QSGLL---NEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQESLSMG-RANIRNTSLE 67

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
              + Q           E     +    +          + E          +       
Sbjct: 68  QGTMNQTNGTFDLAIEGEGFFMVETPAGNRLTRAGNFTPNAEGDLVTADGYRVLDAGQAP 127

Query: 131 A 131
            
Sbjct: 128 M 128


>gi|238793996|ref|ZP_04637614.1| Flagellar basal-body rod protein flgC [Yersinia intermedia ATCC
          29909]
 gi|238726628|gb|EEQ18164.1| Flagellar basal-body rod protein flgC [Yersinia intermedia ATCC
          29909]
          Length = 134

 Score = 41.2 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NA          Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSQIVDD 70


>gi|160939632|ref|ZP_02086980.1| hypothetical protein CLOBOL_04524 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437423|gb|EDP15187.1| hypothetical protein CLOBOL_04524 [Clostridium bolteae ATCC
          BAA-613]
          Length = 118

 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 9/35 (25%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
               NI N +   Y  +              T+R
Sbjct: 24 QIASHNIANVETPGYKAKKVEFRDVLYETAQGTER 58


>gi|330720177|gb|EGG98566.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium
           IMCC2047]
          Length = 150

 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 36/135 (26%)

Query: 342 PQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL 401
               +    L    S          +        +            D + G   N    
Sbjct: 12  TGMSAQTIRLNTVASNIANAESVSSSTGETYRARHPVFSVIRDQVNQDMLGGGFNNNFNG 71

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
             A   +       S +           +     Y     V++  E++ +I   ++Y  +
Sbjct: 72  MSAGYGVKVDGIVESQAELRQKYQPDHPSADENGYVYYPNVDVVTEMADMISASRAYQTN 131

Query: 462 NKLIMFTDKMLQTLL 476
            +++    +M+Q +L
Sbjct: 132 VEIMNTAKQMMQRVL 146



 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSL  +F+ A    +  + +  ++  NI NA
Sbjct: 1  MSLNNIFDVAGTGMSAQTIRLNTVASNIANA 31


>gi|312879580|ref|ZP_07739380.1| flagellar basal-body rod protein FlgB [Aminomonas paucivorans DSM
          12260]
 gi|310782871|gb|EFQ23269.1| flagellar basal-body rod protein FlgB [Aminomonas paucivorans DSM
          12260]
          Length = 134

 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTI 45
          S++  S  +N+ NA+   YVRR+     
Sbjct: 18 SRRMGSTTQNLANANTPKYVRREVSFED 45


>gi|307720251|ref|YP_003891391.1| flagellar basal-body rod protein FlgC [Sulfurimonas autotrophica
          DSM 16294]
 gi|306978344|gb|ADN08379.1| flagellar basal-body rod protein FlgC [Sulfurimonas autotrophica
          DSM 16294]
          Length = 164

 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 1  MSLL-AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          MS     F+ +    +    +  +I  NI NA      +   Y RR+ +   
Sbjct: 1  MSNFLNSFDISGYGLSAQRVRVNTISSNIANAQTTRTDEGGPYRRREVVFKA 52


>gi|209695761|ref|YP_002263691.1| flagellar basal body rod protein FlgF [Aliivibrio salmonicida
           LFI1238]
 gi|208009714|emb|CAQ80018.1| flagellar basal-body rod protein FlgF [Aliivibrio salmonicida
           LFI1238]
          Length = 241

 Score = 41.2 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 21/51 (41%)

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +         + +       VN   E++ LI +++ + +  K++   ++M
Sbjct: 180 NNAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEEM 230



 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/117 (7%), Positives = 23/117 (19%), Gaps = 14/117 (11%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN-------KNMF 63
            +      Q       N+ N     + R D     + +                  +N  
Sbjct: 1   MSGAKQNMQAMQLSSNNLANVSTTGF-RADLEQARAMQAYGEGLPSRVFSMTERPGQNFA 59

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      +        + ++ +    +             L+        N S 
Sbjct: 60  QGSVITTGRDLDLTIEGDGWISVMDNTGREGL------TRAGNLKIDETGLLMNGSG 110


>gi|330830305|ref|YP_004393257.1| flagellar basal-body rod protein FlgC [Aeromonas veronii B565]
 gi|328805441|gb|AEB50640.1| Flagellar basal-body rod protein FlgC [Aeromonas veronii B565]
          Length = 139

 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VF+ A +  +  S +  ++  N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFKVFDIAGSAMSAQSVRLNTVASNMANADSVSSSVENTYHARRPVFAA 51



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++     KMLQ  L+ 
Sbjct: 99  NVNMVEEMADMINASRSYQTNVQVADSAKKMLQQTLQL 136


>gi|304409977|ref|ZP_07391596.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS183]
 gi|307302310|ref|ZP_07582068.1| flagellar basal-body rod protein FlgF [Shewanella baltica BA175]
 gi|304351386|gb|EFM15785.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS183]
 gi|306914348|gb|EFN44769.1| flagellar basal-body rod protein FlgF [Shewanella baltica BA175]
          Length = 247

 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 29/143 (20%), Gaps = 12/143 (8%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENK 60
              A +       + A    N+ NA+   +       R                  S + 
Sbjct: 5   LYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSMQAFGEGLPTRVFAMTESPSA 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           N     +      +        + A++          +        L         N   
Sbjct: 65  NFRSGPIKTTGRDLDVAIKGDGWFAVQ------AQDGSEAYTRSGSLSFDSTGLLHNDRG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
           + +          +     + ++
Sbjct: 119 NPVMGDAGPIVLPLPIEKVSISQ 141



 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +         VN  +E+  LI +++ + +  K++   ++
Sbjct: 197 VESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEE 235


>gi|162421354|ref|YP_001604846.1| flagellar basal body rod protein FlgF [Yersinia pestis Angola]
 gi|162354169|gb|ABX88117.1| flagellar basal-body rod protein FlgF [Yersinia pestis Angola]
          Length = 243

 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 54/208 (25%), Gaps = 3/208 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N++ + + R D     + + +            
Sbjct: 1   MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGF-RADLEKATATQVMGGGYSSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +    +++ +           + + A             ++  S E         +
Sbjct: 60  QNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGALTINGLPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELTVVNDAIKFK 180
           LG                    +  I      +   EI  ++     +     N+     
Sbjct: 120 LGDGGPIVLPPYSALSIADDGTIAIIPQAGGSKTPEEIERIKLVDIPANQLRKNNRGLLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIS 208
           +     A D   Q      + S +  IS
Sbjct: 180 SNRGPAARDETVQVVNKHLESSNVSAIS 207


>gi|212639570|ref|YP_002316090.1| flagellar basal body rod protein FlgB [Anoxybacillus flavithermus
          WK1]
 gi|212561050|gb|ACJ34105.1| Flagellar basal body rod protein FlgB [Anoxybacillus flavithermus
          WK1]
          Length = 126

 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M L +  F   +   N +S +   I  NI N D  N+  +D     
Sbjct: 1  MKLFSNTFQILEQGLNYSSLKQKVIANNIANVDTPNFKAKDVQFRT 46


>gi|168183267|ref|ZP_02617931.1| flagellar basal-body rod protein FlgC [Clostridium botulinum Bf]
 gi|170756841|ref|YP_001782281.1| flagellar basal body rod protein FlgC [Clostridium botulinum B1
          str. Okra]
 gi|226950077|ref|YP_002805168.1| flagellar basal body rod protein FlgC [Clostridium botulinum A2
          str. Kyoto]
 gi|237796104|ref|YP_002863656.1| flagellar basal body rod protein FlgC [Clostridium botulinum Ba4
          str. 657]
 gi|169122053|gb|ACA45889.1| flagellar basal-body rod protein FlgC [Clostridium botulinum B1
          str. Okra]
 gi|182673715|gb|EDT85676.1| flagellar basal-body rod protein FlgC [Clostridium botulinum Bf]
 gi|226841648|gb|ACO84314.1| flagellar basal-body rod protein FlgC [Clostridium botulinum A2
          str. Kyoto]
 gi|229263476|gb|ACQ54509.1| flagellar basal-body rod protein FlgC [Clostridium botulinum Ba4
          str. 657]
          Length = 144

 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMT 43
                + +  +    +  +I  NI NA          Y R+  + 
Sbjct: 5  FDTMRISASGLSAERLRMDTIASNISNATTTRTENGGPYKRKIAVF 50


>gi|187918168|ref|YP_001883731.1| flagellar basal body rod protein FlgB [Borrelia hermsii DAH]
 gi|119861016|gb|AAX16811.1| flagellar basal-body rod protein FlgB [Borrelia hermsii DAH]
          Length = 135

 Score = 41.2 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVIADNIANVDTPNFKRSKVTFEA 46


>gi|186477695|ref|YP_001859165.1| flagellar basal body rod protein FlgC [Burkholderia phymatum
          STM815]
 gi|184194154|gb|ACC72119.1| flagellar basal-body rod protein FlgC [Burkholderia phymatum
          STM815]
          Length = 141

 Score = 40.8 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISP-ENVTVVT 54
          SL+ +FN A +  +  SQ+      N+ NA          Y  +  +  ++P       +
Sbjct: 3  SLMNIFNVAGSAMSAQSQRLNVTASNLANADSTTGPDGKPYKAKQVVFAVNPIGGARTGS 62

Query: 55 QRSEN 59
           +   
Sbjct: 63 GQQVG 67


>gi|322832562|ref|YP_004212589.1| flagellar basal-body rod protein FlgC [Rahnella sp. Y9602]
 gi|321167763|gb|ADW73462.1| flagellar basal-body rod protein FlgC [Rahnella sp. Y9602]
          Length = 134

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          MS+L +F+ A +     SQ+      N+ NA          Y  +  +            
Sbjct: 1  MSMLGIFDIAGSALAAQSQRLNVSASNMANADSVTGPDGKPYKAKQVVFQVDAAPGQETG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVAQV 67


>gi|224825162|ref|ZP_03698268.1| flagellar basal-body rod protein FlgC [Lutiella nitroferrum 2002]
 gi|224602833|gb|EEG09010.1| flagellar basal-body rod protein FlgC [Lutiella nitroferrum 2002]
          Length = 136

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSL  VF  A +     S +   +  NI NA
Sbjct: 1  MSLSNVFTIAGSALTAQSMRLNVVASNIANA 31


>gi|71906389|ref|YP_283976.1| flagellar basal-body rod protein FlgC [Dechloromonas aromatica
          RCB]
 gi|71846010|gb|AAZ45506.1| Flagellar basal-body rod protein FlgC [Dechloromonas aromatica
          RCB]
          Length = 137

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          MSL  VF  + +     S +  +   N+ NAD+        Y  +  +   +P      +
Sbjct: 1  MSLFNVFQVSSSAMTAQSMRLNTTASNLANADSVISADGKPYRAKQVVFEATPMGNAGDS 60

Query: 55 QRSEN 59
           +   
Sbjct: 61 SKGVR 65



 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            VN+ EE++ +I   +SY  + +++     ML
Sbjct: 97  NVNVVEEMTNMISASRSYQTNVEVMNTAKTML 128


>gi|296274029|ref|YP_003656660.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098203|gb|ADG94153.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299]
          Length = 241

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 51/208 (24%), Gaps = 7/208 (3%)

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
            +  +   +         +   L G   E      N          D  +    +    +
Sbjct: 31  TIGFKQENLAEGTFNNYLLKANLEGKKPEYINELTNKVPKIDQKFIDSSQGPIVQTGNNL 90

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
              +     + +      +          N        +  N          I D     
Sbjct: 91  DFALKEPQTFFAVLDQNGNVQYTKDGSFKNSDGFLVDSNGNNVLSGDGEPIAIEDGFKQA 150

Query: 395 NTNVTLLEYARNS-----IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
                +    +N        +  K+           +   N I +       VN    + 
Sbjct: 151 IGVFNID--YKNLEKFGDNNYKLKDEQQVAVQVQAEENNENFILQGSLEQSNVNSVMAMV 208

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            LI+ ++SY  + K I   D M +T+++
Sbjct: 209 QLIEAQRSYEQAQKGITGIDSMNKTIIQ 236


>gi|240145510|ref|ZP_04744111.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis
          L1-82]
 gi|257202325|gb|EEV00610.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis
          L1-82]
 gi|291535999|emb|CBL09111.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis
          M50/1]
 gi|291538493|emb|CBL11604.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis
          XB6B4]
          Length = 131

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 9/25 (36%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTIS 46
            I  NI N D   Y R+D      
Sbjct: 25 NVITNNIANIDTPGYKRQDVDFESV 49


>gi|84502400|ref|ZP_01000536.1| flagellar basal-body rod protein flgB [Oceanicola batsensis
          HTCC2597]
 gi|84389212|gb|EAQ02009.1| flagellar basal-body rod protein flgB [Oceanicola batsensis
          HTCC2597]
          Length = 133

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 22 ASIVRNIENADNKNYVRRDT-MTTISPENVTVVTQRSENKN 61
            I +N+ N+D   Y  RD                R+ +  
Sbjct: 24 QVIAQNVANSDTPGYKARDVSNFAEVLRGAGGAGVRTTDSR 64


>gi|332558507|ref|ZP_08412829.1| FlgF [Rhodobacter sphaeroides WS8N]
 gi|332276219|gb|EGJ21534.1| FlgF [Rhodobacter sphaeroides WS8N]
          Length = 251

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       VN  EEL   I++++++ ++ ++I    ++
Sbjct: 200 VLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSAKEL 239


>gi|254292929|ref|YP_003058952.1| flagellar basal-body rod protein FlgC [Hirschia baltica ATCC
          49814]
 gi|254041460|gb|ACT58255.1| flagellar basal-body rod protein FlgC [Hirschia baltica ATCC
          49814]
          Length = 138

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 1  MS--LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT 43
          MS  L++  + A +     + +      N+ NA++         Y R+  + 
Sbjct: 1  MSGDLMSAMSSAASGLRAQTVRIRVSAENLANANSTGDTPGADPYQRKVPVF 52


>gi|119477955|ref|ZP_01618055.1| flagellar basal-body rod protein FlgC [marine gamma proteobacterium
           HTCC2143]
 gi|119448868|gb|EAW30110.1| flagellar basal-body rod protein FlgC [marine gamma proteobacterium
           HTCC2143]
          Length = 147

 Score = 40.8 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV-TLLEYARNSIGWLEKN 414
           + +   L N +  +   D +        +    D +A  N ++ TL + A   +      
Sbjct: 22  NTTASNLANAQAASSNIDEVYRARHPVFETMRMDMMANNNGSMPTLADDASMGMRVTGIV 81

Query: 415 RSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            SD+  +            E Y     VN+ EE++ +I   +S+ ++ +L+    +M+Q 
Sbjct: 82  ESDAPLVRRYEPNHLKADEEGYVYYPNVNVVEEMADMISASRSFQVNVELMNSAKQMMQG 141

Query: 475 LLEG 478
           LL  
Sbjct: 142 LLRL 145



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  VF+ A    +  S +  +   N+ NA 
Sbjct: 1  MSLANVFDIAGMGMSAQSIRLNTTASNLANAQ 32


>gi|239817164|ref|YP_002946074.1| flagellar basal body rod protein FlgF [Variovorax paradoxus S110]
 gi|239803741|gb|ACS20808.1| flagellar basal-body rod protein FlgF [Variovorax paradoxus S110]
          Length = 248

 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 39/164 (23%), Gaps = 13/164 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +  +   A +    A +Q AS+  N+ NA    +  +       P               
Sbjct: 1   MDRMLYVAMSGAKQAMEQQASVANNMANASTPGFRAQINSFRAVPVTDGAEATTRAYVVA 60

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     L     A+        + A++                +  L+ + E   
Sbjct: 61  TTPGADFSHGPLTETGRALDVAIHGDGWLAVQ------TPDGGEAYTRVGNLQVNAEGQL 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
             +    +                 +A  +   R   D  I + 
Sbjct: 115 TTMGSLPVAGDAGALTVPPGSTVAIAANGLVTARGAGDPAIGIA 158


>gi|148240969|ref|YP_001220470.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp.
           BTAi1]
 gi|146411345|gb|ABQ39798.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp.
           BTAi1]
          Length = 244

 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/139 (7%), Positives = 27/139 (19%), Gaps = 6/139 (4%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD------ 64
            +      ++  ++  N+ NAD   +  R                  + +          
Sbjct: 9   LSRLIALERRLDNVANNVANADTTGFRARQLSFQEYLSPAKEGEANGKRERPVSLVNAGL 68

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
           +   +   AI           + +   A              L          +    + 
Sbjct: 69  QYPDSAGGAIQLTGNPLDVAIVGDGYFAVQTPQGERYTRAGSLTTDATGRLVTMDGLPIL 128

Query: 125 KTVIDNAEEVVQNFNTSAR 143
                      +   T A 
Sbjct: 129 SRTGPITVAPGERSLTIAS 147


>gi|12057219|gb|AAF14371.2|AF133240_5 flagellar proximal rod protein FlgF [Rhodobacter sphaeroides]
          Length = 251

 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 21/40 (52%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           + +       VN  EEL   I++++++ ++ ++I    ++
Sbjct: 200 VLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSAKEL 239


>gi|89092134|ref|ZP_01165089.1| flagellar basal-body rod protein FlgC [Oceanospirillum sp. MED92]
 gi|89083869|gb|EAR63086.1| flagellar basal-body rod protein FlgC [Oceanospirillum sp. MED92]
          Length = 145

 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 2/134 (1%)

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
            S  +      + +   L N ++++   D               DP+A  +    +   A
Sbjct: 11  GSAMNAQTIRLNTTASNLANAESVSSSLDETYRARKPVFAVQQTDPLAEPDNEAGI--AA 68

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464
              +  L    S++      +        + +     VN+ EE++ +I   +S+ I+ ++
Sbjct: 69  GRGVQVLGIVESEAELRQEYNPAHPMADEQGFVYYPNVNVVEEMADMISASRSFQINTEI 128

Query: 465 IMFTDKMLQTLLEG 478
           +    +MLQ  +  
Sbjct: 129 MNTAKQMLQQTIRL 142



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSL  VF  A +  N  + +  +   N+ NA
Sbjct: 1  MSLSNVFGIAGSAMNAQTIRLNTTASNLANA 31


>gi|103488388|ref|YP_617949.1| flagellar basal-body rod FlgF [Sphingopyxis alaskensis RB2256]
 gi|98978465|gb|ABF54616.1| Flagellar basal-body rod FlgF [Sphingopyxis alaskensis RB2256]
          Length = 247

 Score = 40.8 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 51/231 (22%), Gaps = 1/231 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   + +    +  +  +I  N+ NA    +            + + +  R+     
Sbjct: 1   MDRLIYTSLSAMRGSMARQTAIANNLANAQTPGFRADMASAQSLWLDGSGLDARAMASEE 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +     R L        ++                L+ S            
Sbjct: 61  VLGADMKAGTVTSTGRDLDIAMQGDALLVVQAKNGEEAYTRRGDLQVSPSGLLTTGDGHP 120

Query: 123 LGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +               +      V  +    D E   E+  LR      + V   +    
Sbjct: 121 VQGGQGPVTIPPADAISIDQQGRVWIVPQGGDPENPQEVDRLRLATPAGSEVAKGLDGLF 180

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             K       D    LL +  E   ++        +    S  T L     
Sbjct: 181 RVKGGGILPDDPEARLLTRSIEGSNVTATSALVEMIEASRSWDTQLKMIGD 231


>gi|332284020|ref|YP_004415931.1| flagellar basal body rod protein FlgF [Pusillimonas sp. T7-7]
 gi|330427973|gb|AEC19307.1| flagellar basal body rod protein FlgF [Pusillimonas sp. T7-7]
          Length = 248

 Score = 40.8 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 8/140 (5%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENV-------TVVTQRSE-NKNMFDKVLHAHSSA 73
           A I  N+ N +   +  +  +    P           V T  S  + +M   V+     A
Sbjct: 20  AVISNNLANVNTAGFREQMAIYRSVPVVGAAPSLPTRVSTVTSTPSSHMGQGVMVETGHA 79

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEE 133
           +        + +++                   L  +L+ Y    ++    +     A  
Sbjct: 80  LDAAITGDGWFSVQTPQGEAYTRAGEFAVNEQSLLVNLQGYPVLSADGAPIEIPERGAVT 139

Query: 134 VVQNFNTSAREVQKIRADAD 153
              +   SA        D  
Sbjct: 140 FSGDGQISALGAGDRPNDIQ 159


>gi|257871307|ref|ZP_05650960.1| flagellar hook-basal body complex protein [Enterococcus gallinarum
           EG2]
 gi|257805471|gb|EEV34293.1| flagellar hook-basal body complex protein [Enterococcus gallinarum
           EG2]
          Length = 233

 Score = 40.8 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 413 KNRSDSHDLHMKSQVVFN-HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +  +    +     V    I +       V++ +E+  +I+  + +  + K++  T++ 
Sbjct: 163 TDGQNYVTSNAAGTNVNAPVIQQGALEQANVSVADEMVAMIQTSREFEANQKVLSSTNQT 222

Query: 472 LQTLLE 477
           LQ  + 
Sbjct: 223 LQKAVN 228


>gi|312882658|ref|ZP_07742395.1| flagellar basal body rod protein FlgF [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369619|gb|EFP97134.1| flagellar basal body rod protein FlgF [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 248

 Score = 40.8 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/104 (8%), Positives = 22/104 (21%), Gaps = 8/104 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQALQLRANNLANVSTTGF-RADLEQARSMQAYGEGLPTRVFSMT 59

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               +N     +      +        + ++ +    +    N 
Sbjct: 60  ERPGQNFRQGSVITTGRDLDVTIEGLGWISVLDKTGKEGLTRNG 103


>gi|284041506|ref|YP_003391846.1| flagellar basal-body rod protein FlgB [Conexibacter woesei DSM
          14684]
 gi|283945727|gb|ADB48471.1| flagellar basal-body rod protein FlgB [Conexibacter woesei DSM
          14684]
          Length = 117

 Score = 40.8 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 1  MSLLAVFNKAQ-NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          MSL      A  +    +S +   +  N+ N +   Y R+D     + +      
Sbjct: 1  MSLFDSTQLALESALRGSSMRQELLTNNLANINTPGYQRQDLDFHSALQAAQASG 55


>gi|116493632|ref|YP_805366.1| hypothetical protein LSEI_0060 [Lactobacillus casei ATCC 334]
 gi|116103782|gb|ABJ68924.1| Predicted membrane protein [Lactobacillus casei ATCC 334]
          Length = 1103

 Score = 40.8 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 95/398 (23%), Gaps = 4/398 (1%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++ A    +           +S    I NAD      +   T  +  N       S N  
Sbjct: 473 TINAGLTDSVKGLKQVQAGLSSANTQITNADVAG-STQQVQTLANGTNTLSSGASSLNSG 531

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +        S   G  +L     AL   ++     +      + +L  +    +  +++ 
Sbjct: 532 IGQYTSGVASLNTGIGQLSSQLPALSSGVNTLSTSSTQLAKGMDQLSGNSTVLASGMNQL 591

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 + +    + +   +     +       ++       +  L E+   +  ++  T
Sbjct: 592 SDKSGELTSGMNKLASQVQNLTGSAQQIVTLINQLPNGSQLTQSILEEIAKFSGGVQQLT 651

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                  D +   +     ++  I   T   +     + + +          +      +
Sbjct: 652 NGTSSLGDGIKTLNNGTTALNSGISTLTSGTHQLSSGIGSLNSQVPSLVSGVNQLNTGSS 711

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                + +       V   ++Q +   +  +   ++     V   Q+ L    + L    
Sbjct: 712 QLAAQNGTLNSGAAQVASGADQVNTGVQ-TLNTKVKAISEQVTTMQSGLTSADKALGT-- 768

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 +             G K                   Y S+ + +     V K  
Sbjct: 769 IADGSTSMKQYLTELQKSYLGKKFYIPNATLKSKTFKPALTTYMSDGNKITKLTVVLKGD 828

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                       +            + D    +    +
Sbjct: 829 PSTDAAAKQIEAIKTDMTAKLKHTPLADATVAVGGQTS 866


>gi|261840251|gb|ACY00017.1| flagellar basal body rod protein FlgC [Helicobacter pylori 52]
 gi|332674370|gb|AEE71187.1| flagellar basal-body rod protein FlgC [Helicobacter pylori 83]
          Length = 161

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|297569163|ref|YP_003690507.1| flagellar basal-body rod protein FlgB [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925078|gb|ADH85888.1| flagellar basal-body rod protein FlgB [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 128

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 19/66 (28%)

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYN 459
                   +    +    +        V              V+L EE+  L + +  Y 
Sbjct: 47  FERVMAQVVSGQGQVARTNPRHLAIDPVEAARAGRFREEERPVDLDEEMLKLSENQMMYQ 106

Query: 460 ISNKLI 465
           ++ +LI
Sbjct: 107 VAAQLI 112


>gi|157692298|ref|YP_001486760.1| flagellar basal body rod protein FlgC [Bacillus pumilus SAFR-032]
 gi|157681056|gb|ABV62200.1| flagellar basal body rod protein [Bacillus pumilus SAFR-032]
          Length = 150

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+ +  N + +       +   +  N+ N D  
Sbjct: 1  MSIFSGVNASASALTAQRLRMDVVSSNLANMDTT 34


>gi|123442786|ref|YP_001006763.1| flagellar basal body rod protein FlgC [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|332161320|ref|YP_004297897.1| flagellar basal body rod protein FlgC [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|2494525|sp|Q56894|FLGC_YEREN RecName: Full=Flagellar basal-body rod protein flgC
 gi|793899|emb|CAA88193.1| flgC [Yersinia enterocolitica]
 gi|122089747|emb|CAL12600.1| flagellar basal-body rod protein FlgC [Yersinia enterocolitica
          subsp. enterocolitica 8081]
 gi|325665550|gb|ADZ42194.1| flagellar basal body rod protein FlgC [Yersinia enterocolitica
          subsp. palearctica 105.5R(r)]
 gi|330860608|emb|CBX70905.1| flagellar basal-body rod protein flgC [Yersinia enterocolitica
          W22703]
          Length = 134

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NA          Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQIIDD 70


>gi|254993619|ref|ZP_05275809.1| flagellar basal body rod protein FlgC [Listeria monocytogenes FSL
           J2-064]
          Length = 136

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVXQKMYAANTSALQA 122

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 123 NEKMME 128



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTMTTI 45
          +    N + +  N A Q       NI NAD+        ++R+  + + 
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSE 49


>gi|22127326|ref|NP_670749.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM 10]
 gi|45442797|ref|NP_994336.1| flagellar basal body rod protein FlgF [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809054|ref|YP_652970.1| flagellar basal body rod protein FlgF [Yersinia pestis Antiqua]
 gi|108810749|ref|YP_646516.1| flagellar basal body rod protein FlgF [Yersinia pestis Nepal516]
 gi|145597818|ref|YP_001161894.1| flagellar basal body rod protein FlgF [Yersinia pestis Pestoides F]
 gi|166212093|ref|ZP_02238128.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399157|ref|ZP_02304681.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167425211|ref|ZP_02316964.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229837409|ref|ZP_04457572.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A]
 gi|229900946|ref|ZP_04516070.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516]
 gi|21960407|gb|AAM87000.1|AE013948_8 putative flagellar rod protein [Yersinia pestis KIM 10]
 gi|45437663|gb|AAS63213.1| putative flagellar rod protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774397|gb|ABG16916.1| hypothetical protein YPN_0584 [Yersinia pestis Nepal516]
 gi|108780967|gb|ABG15025.1| hypothetical protein YPA_3063 [Yersinia pestis Antiqua]
 gi|145209514|gb|ABP38921.1| hypothetical protein YPDSF_0510 [Yersinia pestis Pestoides F]
 gi|166206839|gb|EDR51319.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167051661|gb|EDR63069.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055974|gb|EDR65755.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682285|gb|EEO78377.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516]
 gi|229705532|gb|EEO91542.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A]
 gi|320016710|gb|ADW00282.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 243

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 54/208 (25%), Gaps = 3/208 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N++ + + R D     + + +            
Sbjct: 1   MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGF-RADLEKATATQVMGGGYSSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +    +++ +           + + A             ++  S E         +
Sbjct: 60  QNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGALTINGLPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELTVVNDAIKFK 180
           LG                    +  I      +   EI  ++     +     N+     
Sbjct: 120 LGDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQLRKNNRGLLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIS 208
           +     A D   Q      + S +  IS
Sbjct: 180 SNRGPAARDETVQVVNKHLESSNVSAIS 207


>gi|27378285|ref|NP_769814.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA
          110]
 gi|27351432|dbj|BAC48439.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA
          110]
          Length = 149

 Score = 40.8 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN 35
          MS+ +    A +  + AS + +    NI N     
Sbjct: 1  MSIFS---IATSGLSAASLRVSVAASNIANISTTG 32


>gi|291288219|ref|YP_003505035.1| flagellar basal-body rod protein FlgB [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290885379|gb|ADD69079.1| flagellar basal-body rod protein FlgB [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 136

 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 13/43 (30%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
               AS +   I  NI N D   Y  +D       + V    
Sbjct: 15 TGLRTASVKNGVIAENIANKDTPGYKAQDLEFYDVMDEVLGTG 57


>gi|333008275|gb|EGK27749.1| flagellar basal-body rod protein flgC [Shigella flexneri K-272]
          Length = 90

 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 15/83 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMT------TISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFLVNAAPGAATG 60

Query: 49 NVTVVTQRSEN---KNMFDKVLH 68
           V V   +          ++V+ 
Sbjct: 61 GVKVADVKKVRPRTNWFMNQVIR 83


>gi|317178281|dbj|BAJ56070.1| flagellar basal body rod protein FlgC [Helicobacter pylori F16]
          Length = 161

 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|296447440|ref|ZP_06889365.1| flagellar basal-body rod protein FlgC [Methylosinus trichosporium
          OB3b]
 gi|296255060|gb|EFH02162.1| flagellar basal-body rod protein FlgC [Methylosinus trichosporium
          OB3b]
          Length = 139

 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD----NKN---YVRRDTMTTI 45
          L A    A +  +  S +   +  N+ NA           Y R+      
Sbjct: 4  LQASMKIAGSGLSAQSARLRVVAENMANAQSVAKTAGGAPYSRKTISFQS 53


>gi|123442783|ref|YP_001006760.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089744|emb|CAL12597.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 251

 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 35/155 (22%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRSQLAAMRAVPIDGPSMATRTMVTASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  S     R L         ++               ++ S +         ++G    
Sbjct: 67  SQGSMNYSGRPLDVALQQDGYLAVRLPDGTEAYTRNGNIQISADGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|90415320|ref|ZP_01223254.1| flagellar basal-body rod protein FlgC [marine gamma
          proteobacterium HTCC2207]
 gi|90332643|gb|EAS47813.1| flagellar basal-body rod protein FlgC [marine gamma
          proteobacterium HTCC2207]
          Length = 141

 Score = 40.8 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTIS 46
          MS+  +F  A +  N    +  S   N+ NA          +  +  +    
Sbjct: 1  MSISNIFGIAASAMNAQMVRMNSTASNMANAGTVSSSAEDAFKAKRPVFQAL 52


>gi|260893878|ref|YP_003239975.1| flagellar basal-body rod protein FlgB [Ammonifex degensii KC4]
 gi|260866019|gb|ACX53125.1| flagellar basal-body rod protein FlgB [Ammonifex degensii KC4]
          Length = 133

 Score = 40.8 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
           + A+ +   I  N+ N D   + +       
Sbjct: 16 LDAAALRQRVIADNLANVDTPGFKKGVVRFEE 47


>gi|218290051|ref|ZP_03494218.1| protein of unknown function DUF1078 domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|218239885|gb|EED07073.1| protein of unknown function DUF1078 domain protein
          [Alicyclobacillus acidocaldarius LAA1]
          Length = 262

 Score = 40.8 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 5/46 (10%), Positives = 10/46 (21%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +  +     +    A+     I  N+ N     Y            
Sbjct: 1  MGQMMWNGLSGIQAANAWIDQIADNLANLQTPGYAAEQGTFADLLT 46


>gi|119489792|ref|ZP_01622550.1| hypothetical protein L8106_10612 [Lyngbya sp. PCC 8106]
 gi|119454366|gb|EAW35516.1| hypothetical protein L8106_10612 [Lyngbya sp. PCC 8106]
          Length = 1674

 Score = 40.8 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 65/306 (21%), Gaps = 5/306 (1%)

Query: 137  NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
             F + +    +  +      E+   +    L  L   +D                   ++
Sbjct: 1156 YFGSGSGSGNQQPSAVADTFEVTSQSTNNTLDVLANDSDPDGDALVFGSVGTPTNGSVEI 1215

Query: 197  LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256
                 + +   +      +      +DG    +     +N     +      ++   +D 
Sbjct: 1216 NATNDALLYTPNASFSGTDTFNYSITDGNGGTDQATVTVNVVGTGNGLPNIVNDGFTVDE 1275

Query: 257  VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPG 316
               ++     V     +       SV       +  +     G           +E    
Sbjct: 1276 DSSNNPLDVLVNDTDPENDPLSITSVGATDNGGMVTINNTNDGLVYTPATDFTGTETFTY 1335

Query: 317  LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376
                         +   ++           N +   D  + +   L N  +      L  
Sbjct: 1336 TVSDGNGGVNTATVTMNVNNVNDAPTAANDNLNIAVDSSNNALDVLVNDTDPDSGDTLTI 1395

Query: 377  HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESY 436
                + N        A  +             G++                    +S + 
Sbjct: 1396 TGVSATNNGGTVSINASNDG-----LIYTPGNGFVGTESFTYTIADSTGSTSSAQVSLNV 1450

Query: 437  SNTVGV 442
            +   GV
Sbjct: 1451 AEASGV 1456


>gi|268316361|ref|YP_003290080.1| flagellar basal-body rod protein FlgC [Rhodothermus marinus DSM
          4252]
 gi|262333895|gb|ACY47692.1| flagellar basal-body rod protein FlgC [Rhodothermus marinus DSM
          4252]
          Length = 166

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          + + F  A           ++   NI NA   
Sbjct: 7  IFSFFRTAARGLEAQRMAMSAATENIANAATT 38


>gi|254460299|ref|ZP_05073715.1| flagellar proximal rod protein FlgF [Rhodobacterales bacterium
           HTCC2083]
 gi|206676888|gb|EDZ41375.1| flagellar proximal rod protein FlgF [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 253

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 13/215 (6%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
            + A N   N S       +N+ N +   Y        ++ E   + +       +F + 
Sbjct: 5   IHIALNSMRNISSDLTVNSQNMANVNVPGY---RADLVVTREAQALQSFDEFRSRVFSRQ 61

Query: 67  -----LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS--PTHYISKLRDSLESYSKNLS 119
                  A   A+             E                        LE +  + +
Sbjct: 62  GKGTLFSAEQGAMQNTGEPMDAAIRGEGYFMIAPATGGDPALSRRGDFGFDLERFIIDGA 121

Query: 120 EDILGKTVIDNAEEVVQNFNTS--AREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
              L  T ++  +             ++Q     A +   +    +    +    ++ +I
Sbjct: 122 GSRLLDTDMNPIQLPEARRIVVEETGQIQVELFGAPEGTFVPGPIIATTSAADVKLSKSI 181

Query: 178 -KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
                 S  D     DQR  + Q   E   ++TI 
Sbjct: 182 DSHIRPSNGDPLPEPDQRARISQGFLESSNVNTIT 216


>gi|111115119|ref|YP_709737.1| flagellar basal body rod protein FlgB [Borrelia afzelii PKo]
 gi|216263868|ref|ZP_03435862.1| flagellar basal-body rod protein FlgB [Borrelia afzelii ACA-1]
 gi|110890393|gb|ABH01561.1| flagellar basal-body rod protein [Borrelia afzelii PKo]
 gi|215979912|gb|EEC20734.1| flagellar basal-body rod protein FlgB [Borrelia afzelii ACA-1]
          Length = 135

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVISDNIANVDTPNFKRSKISFES 46


>gi|213407372|ref|XP_002174457.1| nucleoporin nup189 [Schizosaccharomyces japonicus yFS275]
 gi|212002504|gb|EEB08164.1| nucleoporin nup189 [Schizosaccharomyces japonicus yFS275]
          Length = 1789

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/392 (7%), Positives = 74/392 (18%), Gaps = 20/392 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
            L                          N +   + +  T +++      +         
Sbjct: 26  GLFGSNTSGGGGLFGNQ-----------NTNTGGFGQNTTNSSLFGSGTGLFGNN----- 69

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL--RDSLESYSKNLS 119
             +      ++          F      MSA   + ++  +         S  ++    +
Sbjct: 70  --NTQNQQSATPAFGNTSGGLFGQQNNSMSATPAFGSNNNNTGGLFGGVGSNNAFGNTSN 127

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
            +    +  +N        N  +                  +            N A   
Sbjct: 128 TNTAFGSQNNNTGGTSFFGNRPSTGFGSNTGGGLFGNSSATTPAFGNTGGFNSTNAAGAV 187

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            T + + ++    ++D     ++    IS +    N  +                     
Sbjct: 188 TTGTMNPSYSVTSEKDPQSNGMNHFQCISCMPAYRNYSLEELRLQDYNQGRRNNSTAPAT 247

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                 ++ +      G  +  N  S        A     ++            A     
Sbjct: 248 TGFGQPSTTTTTTGFGGSNLFGNTNSTNTTTPFGANTTASNTGTGNLFGGGTTGAFGQKA 307

Query: 300 SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
           + +     A  +                       +      P   +  S    G +   
Sbjct: 308 TPAFGGSNAPGTGTTGTGLFGQTNTTGGGLFGGNTNTAFGQKPATSAFGSGGGFGTNTGT 367

Query: 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
                  N               +  F  +  
Sbjct: 368 TGGLFGANNTANQANTGTTGAFGSGGFGSNTT 399


>gi|91224198|ref|ZP_01259461.1| putative flagellar basal-body rod protein [Vibrio alginolyticus
           12G01]
 gi|269965645|ref|ZP_06179758.1| Flagellar basal-body rod protein flgF [Vibrio alginolyticus 40B]
 gi|91191109|gb|EAS77375.1| putative flagellar basal-body rod protein [Vibrio alginolyticus
           12G01]
 gi|269829713|gb|EEZ83949.1| Flagellar basal-body rod protein flgF [Vibrio alginolyticus 40B]
          Length = 243

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 65/247 (26%), Gaps = 27/247 (10%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      VR   M     +  T+
Sbjct: 1   MDSLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERVRSVEMQGPGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S +       +      +    + + + +++          N        ++    
Sbjct: 57  VVTNSASTRFDAGDIVKTGRPLDVAVMGEGYLSVE------TPAGNEAYTRAGNIQVDTF 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-----SNLRRFL 167
                    +LG        +  +   +   +V  I      EI           + +  
Sbjct: 111 GALTINGFPVLGDNGPLVVPDYQKIEISERGQVSVIPPGGGAEIVAGTLKLVKPEINQLQ 170

Query: 168 SELTVVNDAIKFKTASKHDAHDFLDQR--DVLLQKISEIIGISTIVRNNNDMVVYTSDGT 225
            E   +  ++     +  +      +      +  I E++ + ++ RN    V       
Sbjct: 171 KESDSLLHSVDGVPFAADETVQLSPEHIEGSNVSAIDELVSVMSLTRNFEMQVRMMKTAE 230

Query: 226 TLFETVP 232
           TL +   
Sbjct: 231 TLAKAGN 237


>gi|291562041|emb|CBL40857.1| fagellar hook-basal body proteins [butyrate-producing bacterium
           SS3/4]
          Length = 265

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 29/129 (22%), Gaps = 18/129 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---------------SP 47
           +   F    +     S+   +I  N+ N     Y     +++                +P
Sbjct: 1   MYQGFYNLASGMLTQSRNLNTISNNMVNIQTPGYKNETMVSSTFKEEMLYRTGQYSKENP 60

Query: 48  ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL 107
             +  V++    K ++          + Q   +  F                        
Sbjct: 61  TQLATVSKIKTAKQVYTNY---DQGGLEQTDGIYDFALNGNGFFCIQTSQGIRYTRNGSF 117

Query: 108 RDSLESYSK 116
               + Y  
Sbjct: 118 SVDKDGYLV 126



 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 5/65 (7%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNH-ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           G L    +             +  +         V++ E+++ ++  +++   + + +  
Sbjct: 191 GQLHAEDNGLFSTAQAETTPADTTVQWKMLEKSNVDMVEQMTAMMSSQRALQSAAQSLKM 250

Query: 468 TDKML 472
            D+++
Sbjct: 251 YDQIM 255


>gi|117621411|ref|YP_857345.1| flagellar basal body rod protein FlgC [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|117562818|gb|ABK39766.1| flagellar basal-body rod protein FlgC [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
          Length = 139

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VF+ A +  +  S +  ++  N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFKVFDIAGSAMSAQSVRLNTVASNMANADSVSSSVEKTYHARRPIFAA 51



 Score = 40.0 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++     KMLQ  L  
Sbjct: 99  NVNMVEEMADMINASRSYQTNVQVADSAKKMLQQTLNL 136


>gi|15646165|ref|NP_208349.1| flagellar basal body rod protein FlgC [Helicobacter pylori 26695]
 gi|217031711|ref|ZP_03437215.1| hypothetical protein HPB128_155g24 [Helicobacter pylori B128]
 gi|298737153|ref|YP_003729683.1| flagellar basal-body rod protein FlgC [Helicobacter pylori B8]
 gi|2314741|gb|AAD08598.1| flagellar basal-body rod protein (flgC) [Helicobacter pylori
          26695]
 gi|216946558|gb|EEC25158.1| hypothetical protein HPB128_155g24 [Helicobacter pylori B128]
 gi|298356347|emb|CBI67219.1| flagellar basal-body rod protein FlgC [Helicobacter pylori B8]
          Length = 161

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|85712252|ref|ZP_01043303.1| Flagellar basal body rod protein [Idiomarina baltica OS145]
 gi|85693879|gb|EAQ31826.1| Flagellar basal body rod protein [Idiomarina baltica OS145]
          Length = 150

 Score = 40.8 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN + +  +  S +  +   N+ NA+
Sbjct: 1  MSLFNIFNISGSAMSAQSVRLNTTASNLANAN 32



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 2/149 (1%)

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
           +       I  +     +        +++     +      Y      +  + +      
Sbjct: 1   MSLFNIFNISGSAMSAQSVRLNTTASNLANANSVSSSIDETYRARSPIFAAALSDASGKY 60

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELS 449
               +       + A   +  L    SD       +          Y     VN  EE++
Sbjct: 61  HGTELTNQTQAGQSAGVKV--LGVVESDKPLQIEYAPNHPMADKNGYIYRSNVNTMEEMA 118

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +I   +SY  + ++      M Q LL  
Sbjct: 119 NMISASRSYQTNVQVADTAKTMTQRLLRL 147


>gi|238797058|ref|ZP_04640561.1| hypothetical protein ymoll0001_2220 [Yersinia mollaretii ATCC
           43969]
 gi|238719103|gb|EEQ10916.1| hypothetical protein ymoll0001_2220 [Yersinia mollaretii ATCC
           43969]
          Length = 1074

 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/405 (5%), Positives = 80/405 (19%), Gaps = 9/405 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-----DHYNNSPTHY 103
                     +           +++ G    L    +     +                 
Sbjct: 156 GGLANAVSGYDGTALTLNNTTINTSGGYGIYLSDVGSTLTGANNVINNTSSASGTGVYIS 215

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              L  +L++ + N++    G  V  ++   +     +         + +  I     +L
Sbjct: 216 NGGLNATLDNTTFNMTNAYAGVGVGKDSTLTMNGLTATGNISNVFEINGNANITNANIDL 275

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   + +          ++ +      +  L  ++    ++    + +    Y   
Sbjct: 276 ASGSVLRAMGHSLTNKAVIVFNNVNALSRSGNSALVNVNMNADVTINGGSYHSQGTYAMG 335

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                      +        T  + +  I   G  +  +            +        
Sbjct: 336 --IWVPDNTSSVRVNNATVITDGNNATAIENRGTAIVDHTTVKTTGNSSHGIYSQSIFNA 393

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                    +  +   +    +     +           +           +        
Sbjct: 394 THMAISTAGVGSIGATAARGGNLNLDGATIDTTGASGMVLGTFIGSSISAKNVIGTSTGA 453

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                        + +        +             +++  + +          +  Y
Sbjct: 454 SAYALWMNTQSIILLQDSRITTTGMNAGGIYAAGADTIYSRATLDNAQVISEQGAGVRAY 513

Query: 404 ARNSIGWL--EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
             N    +      S  + L + +       +   +    VNL  
Sbjct: 514 GANINIDVKNGSQLSGGNGLLVNASTNAGTATAPLNIISNVNLNA 558


>gi|194015045|ref|ZP_03053662.1| flagellar basal-body rod protein FlgC [Bacillus pumilus ATCC
          7061]
 gi|194014071|gb|EDW23636.1| flagellar basal-body rod protein FlgC [Bacillus pumilus ATCC
          7061]
          Length = 150

 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS+ +  N + +       +   +  N+ N D  
Sbjct: 1  MSIFSGVNASASALTAQRLRMDVVSSNLANMDTT 34


>gi|168698713|ref|ZP_02730990.1| flagellar basal-body rod protein FlgB [Gemmata obscuriglobus UQM
          2246]
          Length = 116

 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           I +N+ N +   Y R +     
Sbjct: 24 VIAQNVANVNTPGYKRLEVAFEA 46


>gi|194365325|ref|YP_002027935.1| hypothetical protein Smal_1547 [Stenotrophomonas maltophilia
          R551-3]
 gi|194348129|gb|ACF51252.1| conserved hypothetical protein [Stenotrophomonas maltophilia
          R551-3]
          Length = 99

 Score = 40.8 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 1/59 (1%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-PENVTVVTQRSENK 60
          +  V   A +    A Q       N+ N    +  R       +    V      ++  
Sbjct: 1  MNNVMGIALSGMRVAQQGVQVAAHNVANLATPDAQRLQLQRGAAEQGGVQAAVVPADAD 59


>gi|299066527|emb|CBJ37717.1| Putative flagellar component of cell-proximal portion of basal-body
           rod (flgF) [Ralstonia solanacearum CMR15]
          Length = 254

 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 24/141 (17%), Gaps = 4/141 (2%)

Query: 19  QQFASIVRNIENADNKNYVRRDTM---TTISPENVTVVTQRSENKNMFDKVLHA-HSSAI 74
            +   +  N+ N     Y R        +   + V              +V+       +
Sbjct: 17  ARLDGVALNLANVSTPGYKRGVVAVQPFSSVVDAVAGQAGARAEDMNGVQVMSDMRPGTV 76

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                        +        +          R              +     +     
Sbjct: 77  KLTGEPMDVALAGDGFFEVTTPSGPAYTRQGNFRTDAMGRLVTAQGYPVMGKNGEIFLTT 136

Query: 135 VQNFNTSAREVQKIRADADKE 155
                 +A  V +  A     
Sbjct: 137 QTPVVDAAGNVTEPNATTGPS 157


>gi|163784307|ref|ZP_02179217.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880425|gb|EDP74019.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 238

 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 8/135 (5%), Positives = 30/135 (22%), Gaps = 4/135 (2%)

Query: 20  QFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ 76
           Q  +   N+ N +   + +   ++    I                     +     ++ +
Sbjct: 21  QLDTTTNNLANVNTPGFKKLLLKEMSQKIPDNQGQSKEL-FVFPRFEKTPVVIAQGSLKK 79

Query: 77  QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                      E        N          +        +++ + +  T     +    
Sbjct: 80  TDRPLDLAIDGEGFFQVRFQNQIFLTRNGHFKLDSTGILVDVNSNPVLDTQGKVIKLNST 139

Query: 137 NFNTSAREVQKIRAD 151
              T  ++    + +
Sbjct: 140 ENVTITKDGSIYQNN 154


>gi|149927796|ref|ZP_01916047.1| flagellar basal-body rod protein FlgC [Limnobacter sp. MED105]
 gi|149823418|gb|EDM82649.1| flagellar basal-body rod protein FlgC [Limnobacter sp. MED105]
          Length = 140

 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN  EE+  ++   +SY  + +++    +++   L  
Sbjct: 100 NVNAVEEMVDMLAASRSYQTNAEVMNTAKQLMLKTLNM 137



 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          MSL   F  A       + +  ++  N+ N D         Y  R  +    
Sbjct: 1  MSLFNSFKLAGGAMQAQTTRLNTVASNLANVDTAAGDPNSVYQARKVVFEAV 52


>gi|146343395|ref|YP_001208443.1| putative flagellar basal-body rod protein (flgC) [Bradyrhizobium
           sp. ORS278]
 gi|146196201|emb|CAL80228.1| putative flagellar basal-body rod protein (flgC) [Bradyrhizobium
           sp. ORS278]
          Length = 136

 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 40/147 (27%), Gaps = 12/147 (8%)

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
                        +    L    S                ++      +++   +     
Sbjct: 1   MSPIASNAVSGMNAAARRLEVSASNVANARSTGALPDTNGNVPAGAPKAYDPLELVQSDV 60

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLI 452
                 T       +I       S S+D           ++        V+L +E+   +
Sbjct: 61  AGGGTQT-------TIAKAGNGTSASYDPTAPFANKEGLVAAPR-----VDLAQEMISQL 108

Query: 453 KVEQSYNISNKLIMFTDKMLQTLLEGV 479
             + S+  + +++  +D+M + +++  
Sbjct: 109 VAKYSFAANARVLKASDEMSRIVIDMK 135


>gi|108563932|ref|YP_628248.1| flagellar basal body rod protein FlgC [Helicobacter pylori HPAG1]
 gi|188528350|ref|YP_001911037.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          Shi470]
 gi|217033829|ref|ZP_03439254.1| hypothetical protein HP9810_877g33 [Helicobacter pylori 98-10]
 gi|107837705|gb|ABF85574.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1]
 gi|188144590|gb|ACD49007.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          Shi470]
 gi|216943727|gb|EEC23170.1| hypothetical protein HP9810_877g33 [Helicobacter pylori 98-10]
 gi|308062841|gb|ADO04729.1| flagellar basal body rod protein FlgC [Helicobacter pylori Cuz20]
 gi|315585965|gb|ADU40346.1| flagellar basal-body rod protein FlgC [Helicobacter pylori 35A]
 gi|317013372|gb|ADU83980.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          Lithuania75]
 gi|317179760|dbj|BAJ57548.1| flagellar basal body rod protein FlgC [Helicobacter pylori F30]
 gi|317181261|dbj|BAJ59047.1| flagellar basal body rod protein FlgC [Helicobacter pylori F32]
          Length = 161

 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|195941352|ref|ZP_03086734.1| flagellar basal body rod protein FlgB [Borrelia burgdorferi 80a]
 gi|216264410|ref|ZP_03436402.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 156a]
 gi|218249205|ref|YP_002374817.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi ZS7]
 gi|221217697|ref|ZP_03589165.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 72a]
 gi|224533198|ref|ZP_03673798.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          WI91-23]
 gi|224533758|ref|ZP_03674346.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          CA-11.2a]
 gi|225549095|ref|ZP_03770070.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 94a]
 gi|225550185|ref|ZP_03771145.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 118a]
 gi|226320595|ref|ZP_03796155.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          29805]
 gi|226321612|ref|ZP_03797138.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          Bol26]
 gi|1196315|gb|AAB51407.1| flagellar basal body rod protein [Borrelia burgdorferi]
 gi|215980883|gb|EEC21690.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 156a]
 gi|218164393|gb|ACK74454.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi ZS7]
 gi|221192374|gb|EEE18593.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 72a]
 gi|224511925|gb|EEF82326.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          WI91-23]
 gi|224513051|gb|EEF83414.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          CA-11.2a]
 gi|225369297|gb|EEG98750.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 118a]
 gi|225370321|gb|EEG99759.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 94a]
 gi|226232801|gb|EEH31554.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          Bol26]
 gi|226234014|gb|EEH32735.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi
          29805]
 gi|312148512|gb|ADQ31171.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi JD1]
 gi|312149176|gb|ADQ29247.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi N40]
          Length = 135

 Score = 40.8 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVISDNIANVDTPNFKRSKISFES 46


>gi|304392508|ref|ZP_07374448.1| flagellar basal-body rod protein FlgC [Ahrensia sp. R2A130]
 gi|303295138|gb|EFL89498.1| flagellar basal-body rod protein FlgC [Ahrensia sp. R2A130]
          Length = 138

 Score = 40.8 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
          L A    A +     SQ+   + +NI NA + +       Y R+    T +
Sbjct: 4  LSAAMKVASSGLAAQSQRLEVVSQNIANAQSTSRVAGGEPYQRKTITFTSA 54


>gi|261856362|ref|YP_003263645.1| flagellar basal-body rod protein FlgC [Halothiobacillus
          neapolitanus c2]
 gi|261836831|gb|ACX96598.1| flagellar basal-body rod protein FlgC [Halothiobacillus
          neapolitanus c2]
          Length = 133

 Score = 40.8 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTI-----SPEN 49
          MSL ++FN + +  +  S +  +   N+ NAD         Y  R+ +            
Sbjct: 1  MSLFSIFNVSSSAMSAQSLRLNATASNMANADAVATKPEDAYKAREPVFQQVMEQNGGVG 60

Query: 50 VTVVTQRSEN 59
          V V       
Sbjct: 61 VRVSGITQST 70


>gi|323191536|gb|EFZ76797.1| flagellar basal-body rod protein FlgC [Escherichia coli RN587/1]
          Length = 143

 Score = 40.8 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      N  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHNSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|302338074|ref|YP_003803280.1| flagellar basal-body rod protein FlgB [Spirochaeta smaragdinae
          DSM 11293]
 gi|301635259|gb|ADK80686.1| flagellar basal-body rod protein FlgB [Spirochaeta smaragdinae
          DSM 11293]
          Length = 138

 Score = 40.8 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            +  NI NAD  NY R       
Sbjct: 26 QVMANNIANADTPNYKRSVVNFES 49


>gi|258512706|ref|YP_003186140.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius
          subsp. acidocaldarius DSM 446]
 gi|257479432|gb|ACV59751.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius
          subsp. acidocaldarius DSM 446]
          Length = 262

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 5/46 (10%), Positives = 10/46 (21%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +  +     +    A+     I  N+ N     Y            
Sbjct: 1  MGQMMWNGLSGIQAANAWMDQIADNLANLQTPGYAAEQGTFADLLT 46


>gi|332140543|ref|YP_004426281.1| flagellar basal-body rod protein FlgB [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327550565|gb|AEA97283.1| flagellar basal-body rod protein FlgB [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 144

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          +     +++   I  N+ NA+   Y  RD    
Sbjct: 14 SALKIRTERMEVISGNLANANTPGYKARDIDFN 46


>gi|238783927|ref|ZP_04627944.1| hypothetical protein yberc0001_3230 [Yersinia bercovieri ATCC
           43970]
 gi|238715166|gb|EEQ07161.1| hypothetical protein yberc0001_3230 [Yersinia bercovieri ATCC
           43970]
          Length = 1078

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/403 (5%), Positives = 78/403 (19%), Gaps = 9/403 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-----DHYNNSPTHY 103
                     +  +        + + G    L    +L    +        +        
Sbjct: 156 GGLANAVSGYDGTLLTVNNATINISGGYGIYLSGVGSLLTGENNVINNTSSYSGTGVYIT 215

Query: 104 ISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
              L  +L + + N++    G  V  ++   +     +         +    I     +L
Sbjct: 216 NGSLNSTLNNTTLNMTNAYAGIGVGKDSAITMNGLTVTGNINNVFDINGSANISNANIDL 275

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
                   + N          ++ +      +  L  ++    ++    + +    Y   
Sbjct: 276 ASGSVLRAMGNSLTNKAVIVLNNVNALSRSGNSALVNVNMNADVTINGGSYHSQGTYAMG 335

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVV 283
                      +        T  + +  I   G  +               +        
Sbjct: 336 --IWVPDNSSSVRVTNATVMTDGNNATAIENRGTAIVDQTTVKTTGDNSHGIYSQSIFNA 393

Query: 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ 343
                    +  V   +    +     +           +           +        
Sbjct: 394 TNMAISTTGVGSVGATAARGGNLNLDGATIETTGASGMVLGTFIGSSISAKNVDGSSTGA 453

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
                        + +        +             +++  + +          +  Y
Sbjct: 454 SAYALWTQTSSSILLQDSRIITTGMNAGGIYAAGADTIYSQVTLDNTQIISQQGAGVRAY 513

Query: 404 ARNSIGWL--EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
             N    +      S  + L + +       +        VNL
Sbjct: 514 GANINIDVKNGSQLSGGNGLLVNASTNVGTTTAPLDIISNVNL 556


>gi|157371209|ref|YP_001479198.1| flagellar basal body rod protein FlgC [Serratia proteamaculans
          568]
 gi|157322973|gb|ABV42070.1| flagellar basal-body rod protein FlgC [Serratia proteamaculans
          568]
          Length = 134

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ + +  +  SQ+      N+ NAD+ +      Y  +  +  ++        
Sbjct: 1  MSLLNIFDISGSALSAQSQRLNVSASNMANADSVSGPDGQPYRAKQVVFEVASAAGQPTG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQVVDD 70


>gi|310641540|ref|YP_003946298.1| flagellar basal-body rod protein flgb [Paenibacillus polymyxa
          SC2]
 gi|309246490|gb|ADO56057.1| Flagellar basal-body rod protein FlgB [Paenibacillus polymyxa
          SC2]
          Length = 135

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58
          M+LL    F K Q     A+ +   +  NI NAD   + R +       +          
Sbjct: 1  MNLLGDVSFQKLQAGVQAANTRQRVMADNISNADTPYFKRSEVSFEELLQQQMDGDVTPL 60

Query: 59 NKNMFDKV 66
             + +  
Sbjct: 61 RGKVTNSR 68


>gi|222530142|ref|YP_002574024.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222456989|gb|ACM61251.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 133

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 23 SIVRNIENADNKNYVRRDTMT 43
           I  NI NAD   Y  +D   
Sbjct: 24 IISNNIANADTPGYKAKDLNF 44


>gi|82702454|ref|YP_412020.1| flagellar basal body rod protein FlgF [Nitrosospira multiformis
           ATCC 25196]
 gi|82410519|gb|ABB74628.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 250

 Score = 40.8 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +  +   A     +A  Q A++  N+ NA+   Y       R   + + +      V   
Sbjct: 1   MDRMIYVAMTGAKHALGQHAAVSHNLANANTPGYRAEINALRAVPVFSDTLATRAFVVDS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S   +     +   +  +        + A++          +        L  S     +
Sbjct: 61  SVGADFRPGTVQNTARELDVAIQGAGWIAVQ------LADGSEAYTRNGDLHVSANGVLQ 114

Query: 117 NLSEDILGK 125
                 +  
Sbjct: 115 TRDGLNVLG 123


>gi|319409189|emb|CBI82833.1| Flagellar basal-body rod protein flgC [Bartonella schoenbuchensis
          R1]
          Length = 137

 Score = 40.8 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 13/66 (19%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS------PEN 49
          L+A    A    +  S +   I  N+ NA++         Y R+      +       + 
Sbjct: 5  LIAAEQVATTGLSAQSMRLRIIAENLANANSTGKSPGASPYRRKTVSFEAALNPHSDAQG 64

Query: 50 VTVVTQ 55
          V V   
Sbjct: 65 VQVTRI 70


>gi|119715009|ref|YP_921974.1| flagellar basal-body rod protein FlgB [Nocardioides sp. JS614]
 gi|119535670|gb|ABL80287.1| flagellar basal-body rod protein FlgB [Nocardioides sp. JS614]
          Length = 118

 Score = 40.8 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 3/43 (6%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
           +V N A +      +       NI N D   Y         S
Sbjct: 10 SSVLNAALDGIALRQR---VTADNIANVDTPGYRASSVDFETS 49


>gi|170748110|ref|YP_001754370.1| flagellar basal body rod protein FlgB [Methylobacterium
          radiotolerans JCM 2831]
 gi|170654632|gb|ACB23687.1| flagellar basal body rod protein [Methylobacterium radiotolerans
          JCM 2831]
          Length = 128

 Score = 40.8 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM 42
          MS + +FN A     + + + A I  NI NA+   Y  RD  
Sbjct: 1  MSPIFLFNLASRQLQHLTARQAVISGNIANANTPGYRARDLT 42


>gi|225449724|ref|XP_002267310.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2198

 Score = 40.4 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 72/283 (25%), Gaps = 23/283 (8%)

Query: 8   NKAQNICNNASQQFASIV---RN------IENADNKNYVRRDTMTTI-----SPENVTV- 52
           N  Q   NN SQ  A       N      + N     Y +                 T+ 
Sbjct: 215 NYGQAGTNNYSQALALANGGTNNYSQTLALANGGTSTYSQALANGGTIYYQGLGNGSTIY 274

Query: 53  ------VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                     S ++   +    A+S  IG         A+    +A  +        I  
Sbjct: 275 DQGLANSGTSSYSQAFVNGSPGAYSRLIGNGSAGSGNLAIGNGDAAL-YSQAMHNGDIDL 333

Query: 107 LRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRF 166
              SL+      S   + ++ +  A        + +  + +    A++ + L+ S     
Sbjct: 334 NEYSLQDLLGLASSASVDRSSVQAANRPPALKPSVSEALSRSIHTANRPLVLKTSASEAQ 393

Query: 167 LSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS-EIIGISTIVRNNNDMVVYTSDGT 225
                V N  +  K  +       L          S     I+    N+ DM++   +  
Sbjct: 394 NRNFHVANGPLVRKATTGEAPERSLLNASRPQVPNSHSQFEINWGEDNSIDMLLGKENQC 453

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
           +            ++  Y       P F           +   
Sbjct: 454 SGSSMWKNSNGLLQIPEYGFPIPYQPSFNLNSPPGVEADATSS 496


>gi|332296506|ref|YP_004438429.1| flagellar basal-body rod protein FlgC [Thermodesulfobium
          narugense DSM 14796]
 gi|332179609|gb|AEE15298.1| flagellar basal-body rod protein FlgC [Thermodesulfobium
          narugense DSM 14796]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 13/63 (20%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENA--DNKN-----YVRRDTMTTISPE------NVTV 52
              A +       +      N+ NA  + K+     + R+      S         V V
Sbjct: 5  TLEIAGSGLTAQRLKMDVAANNLANAYSNVKDKNGQIFKRQIVELQESTGKDGSFLGVKV 64

Query: 53 VTQ 55
             
Sbjct: 65 AGI 67


>gi|207091983|ref|ZP_03239770.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 89

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|238796905|ref|ZP_04640409.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC
           43969]
 gi|238719165|gb|EEQ10977.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC
           43969]
          Length = 251

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 27/114 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A    N A  +   +  N+ NA    +  + +     P     V  R+     
Sbjct: 1   MDRAIYTAMGAANAALNRQGVVSNNLANASTTGFRAQLSAFRAVPVEGPSVQTRTLVTES 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
                 +  +     R L         ++ +             +    E   K
Sbjct: 61  TPYHDDSMGAINQTGRNLDVALPQDGWLAVELPDGGEGYTRAGNIEIDSEGLLK 114



 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 17/40 (42%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +      +  V+  + +  +I   + ++++ K+I   D 
Sbjct: 200 QLVPGALESSNVSPVKSMVDMIATARGFDMNMKVISAVDD 239


>gi|326693156|ref|ZP_08230161.1| hypothetical protein LargK3_05410 [Leuconostoc argentinum KCTC
           3773]
          Length = 833

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 41/443 (9%), Positives = 119/443 (26%), Gaps = 15/443 (3%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++L+  N +Q    + S    ++         +   +            T +   +    
Sbjct: 168 TILSAINSSQKGLKSGSNGATTLS--------EGLGKIADGGNTLGNGATKLASGTTTLT 219

Query: 62  MFDKVLHA--HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  A    +  G   L          +S      N+  +  +   +     +   +
Sbjct: 220 TGLAQYTAGVSQANTGSSTLATGLSQYTSGVSQASSGTNTLVNGTTSAANGATKLASGTT 279

Query: 120 EDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +     +++++  +++       A ++QK+    +++   + ++L    + L  +   + 
Sbjct: 280 QLASNMSLLESGSQQIALGAQQLADQLQKVSDQINEQQSAKSTDLNTLDARLEELTTRLS 339

Query: 179 FKTASKHDAHDFLDQR--DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDIN 236
             + ++    D    +  D      S + G +       ++    +    L E    D  
Sbjct: 340 ELSNTESPTIDIDSSKLNDASSALTSGLTGTAKDFATFKELASDDNFKKFLAENPTFDAK 399

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           ++   S    +          +            +++AL      +  + ++        
Sbjct: 400 YQDALSDLGNNVQTSKTAANTIKDQLTALEKMLPQLQALQSQMSQLKELGKSGAVATQSA 459

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
                +  D +   S+ +    +    K  D        +        + N +  +    
Sbjct: 460 RKAIKTLNDSLTTVSQGIANQAVPGAQKLADGATTLTTGQKKATTAVNQVNSAAGQLASG 519

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP--VAGINTNVTLLEYARNSIGWLEKN 414
            S+      +  AG   L  +     +     +         N TL   A       ++ 
Sbjct: 520 NSQLASGASQLSAGLNKLTANNSALNSGASQLNSGLSQLTANNDTLNSGAAQLKTGSQQL 579

Query: 415 RSDSHDLHMKSQVVFNHISESYS 437
            S +  L    Q   +       
Sbjct: 580 ASGASQLVTSLQTAQSGTQTLAQ 602


>gi|262276419|ref|ZP_06054228.1| flagellar basal-body rod protein FlgC [Grimontia hollisae CIP
          101886]
 gi|262220227|gb|EEY71543.1| flagellar basal-body rod protein FlgC [Grimontia hollisae CIP
          101886]
          Length = 136

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NA++      + Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAAETYKARHPVFAA 51


>gi|295399806|ref|ZP_06809787.1| flagellar basal-body rod protein FlgB [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312111682|ref|YP_003989998.1| flagellar basal-body rod protein FlgB [Geobacillus sp. Y4.1MC1]
 gi|294978209|gb|EFG53806.1| flagellar basal-body rod protein FlgB [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311216783|gb|ADP75387.1| flagellar basal-body rod protein FlgB [Geobacillus sp. Y4.1MC1]
          Length = 130

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 1  MSLLA-VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          M+L +      +   + A+ +   I  NI N D  NY  +      
Sbjct: 1  MALFSRTITMLEQGLDYAALREKVIANNIANVDTPNYKAKSVQFRT 46


>gi|241766736|ref|ZP_04764570.1| flagellar basal body rod protein [Acidovorax delafieldii 2AN]
 gi|241362905|gb|EER58629.1| flagellar basal body rod protein [Acidovorax delafieldii 2AN]
          Length = 101

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTT--ISPENVTVVTQRSEN--KNMFDKVLH 68
              A  +  +   N+ N +   Y R             V    QR ++      ++   
Sbjct: 11 GLQAAQLRLDASANNVANMNTSGYRREAVAQQADADGAGVRATLQREQDAKGVALEQEAV 70

Query: 69 AHSSAIGQQRLLQSFEALKEMMSAD 93
             SA    +        ++ M   
Sbjct: 71 EQISATYAFKANLQTLKTQDAMMGS 95


>gi|114566382|ref|YP_753536.1| hypothetical protein Swol_0846 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
 gi|114337317|gb|ABI68165.1| conserved hypothetical protein [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 138

 Score = 40.4 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI NAD   + RR+ +   
Sbjct: 26 DVIADNIANADTPKFKRREVIFEE 49


>gi|228984857|ref|ZP_04145027.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774807|gb|EEM23203.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 257

 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 53/230 (23%), Gaps = 18/230 (7%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVR----------RDTMTTISPENVTVVT 54
                      N  Q+      N+ NA    +            +DT        + + +
Sbjct: 2   NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVINIGS 61

Query: 55  Q------RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLR 108
                   + + N+    +   +SA      L    A           N +         
Sbjct: 62  VDYAVVPAATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFT 119

Query: 109 DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLS 168
            + + Y +  S   +     +              +     A     I    +      +
Sbjct: 120 LNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEA 179

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              +V    K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NNRLVQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMT 229



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/211 (7%), Positives = 47/211 (22%), Gaps = 12/211 (5%)

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
             ++ D      +     +    +           N                 +    G 
Sbjct: 39  TSKVFDVQDTYRRGDGAVINIGSVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGTAGT 98

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
           +     +    +  +        S ++L          +                    +
Sbjct: 99  ASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTL 158

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ------------VVFNHISESYSNTVGV 442
              VT    AR     +    ++                          +         V
Sbjct: 159 YDAVTQNNIARLQTKTVGAEANNRLVQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNV 218

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           ++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 219 DMTKEMADLMTDQKMISASQRVMTSFDKIYE 249


>gi|291562032|emb|CBL40848.1| flagellar basal-body rod protein FlgC [butyrate-producing
          bacterium SS3/4]
          Length = 149

 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M+ L  F+ + +  +    +      NI N D         Y R++ +   
Sbjct: 1  MAFLGSFDISASGMSAQRVRMDIAAENIANMDTTRTESGGPYRRKNVLLES 51


>gi|260774936|ref|ZP_05883837.1| flagellar basal-body rod protein FlgC [Vibrio coralliilyticus
          ATCC BAA-450]
 gi|260609191|gb|EEX35349.1| flagellar basal-body rod protein FlgC [Vibrio coralliilyticus
          ATCC BAA-450]
          Length = 138

 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|17545606|ref|NP_519008.1| hemagglutinin-related protein [Ralstonia solanacearum GMI1000]
 gi|17427899|emb|CAD14589.1| probable hemagglutinin-related protein [Ralstonia solanacearum
           GMI1000]
          Length = 3501

 Score = 40.4 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/448 (7%), Positives = 96/448 (21%), Gaps = 11/448 (2%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL    +   +    A Q       N+ ++                    +      + +
Sbjct: 363 SLSTSGDLTNSGTLAAQQNLGINANNVASSGTLG--AGVNSDGSFAHAGDLSVVAGGSMS 420

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
              + +   ++ +    +  +        + + +              +  + S N    
Sbjct: 421 ATGQNVAGGNATLQGASVNLAGSQTSANGNLNLNAQTGNLDLTGATASAGGALSANAQGA 480

Query: 122 ILGKTV-IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
           ++     + +         + + +  +I + +     +      +  +            
Sbjct: 481 LINDRGHLASQGATAITAGSLSNQNGQIVSQSTLSANIAGVLANQGGTLQAAGALNANAG 540

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGT-TLFETVPRDINFEK 239
           +      H      D L    + ++  +       +  V    G  T   ++    N   
Sbjct: 541 SLDNTAGHIASLNTDGLNLTTTGLLNNAQGGTIGGNGNVTVQAGQLTNSSSISAVQNLGV 600

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKA-------LLQIRDSVVPIFQNQLDE 292
             + ++ +           VS+        G I A          + +S   +  NQL  
Sbjct: 601 STAQSLANAGTLAANGNTTVSAGTTLTNAGGTIAAGQRTNVSAATLDNSAGTLTGNQLAL 660

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A  LI               +      D            ++             +   
Sbjct: 661 AAANLINRNGSITQSGTGPITIGVSGTLDNTNGSIRTNSADLALAPATLINDHGTITDSG 720

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
            G         +        +           N      A     + +     ++ G++ 
Sbjct: 721 TGTLSVTTGSLSNNGGTIATNGALDVQAGAVSNQGGKLSAQSQATLNVASLDNSAGGYVG 780

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTV 440
                  D    +       +       
Sbjct: 781 AQGVAITDQGALNNAGGTVAASGALTVS 808


>gi|304310886|ref|YP_003810484.1| Flagellar basal body rod protein [gamma proteobacterium HdN1]
 gi|301796619|emb|CBL44831.1| Flagellar basal body rod protein [gamma proteobacterium HdN1]
          Length = 245

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/133 (7%), Positives = 26/133 (19%), Gaps = 18/133 (13%)

Query: 3   LLAVFNKAQNICNNASQQF---ASIVRNIENADNKNYV------RRDTMTTISPENVTVV 53
           +      +      A +      +   N+ NA    +       R   +      +    
Sbjct: 1   MDKGLYISMTG---AREALLSQDTHANNLANASTTGFKADYQQYRSMQVFGSYYPSRVYA 57

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                  +M           +      + + A+ +    +             L   L  
Sbjct: 58  QTERPGTDMRGGNYMTTGRNLDVAVRGKGWIAVLDAEGKEA------FTRAGDLERDLNG 111

Query: 114 YSKNLSEDILGKT 126
                S   +   
Sbjct: 112 TLVTGSGLAVMGN 124


>gi|258621050|ref|ZP_05716084.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM573]
 gi|258625278|ref|ZP_05720186.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM603]
 gi|262166281|ref|ZP_06034018.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM223]
 gi|262170826|ref|ZP_06038504.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451]
 gi|258582451|gb|EEW07292.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM603]
 gi|258586438|gb|EEW11153.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM573]
 gi|261891902|gb|EEY37888.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451]
 gi|262025997|gb|EEY44665.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM223]
          Length = 249

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           I         VN   E++ LI +++ + +  K++   ++M
Sbjct: 199 ILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEM 238



 Score = 40.4 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 7/103 (6%), Positives = 19/103 (18%), Gaps = 6/103 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R                  
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPTRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               N     +      +      + + ++ +    +    N 
Sbjct: 61  RPGHNFAQGSVITTGRDLDITIQGEGWISVLDKTGKEGLTRNG 103


>gi|254780090|ref|YP_003058197.1| flagellar basal body rod protein FlgC [Helicobacter pylori B38]
 gi|254002003|emb|CAX30262.1| Flagellar basal-body rod protein FlgC [Helicobacter pylori B38]
          Length = 161

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI N +     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANVNTTRTSEGGPYRRQEAVFKA 50


>gi|146341894|ref|YP_001206942.1| flagellar basal body rod protein FlgC [Bradyrhizobium sp. ORS278]
 gi|146194700|emb|CAL78725.1| flagellar basal-body rod protein FlgC (cell-proximal rod protein)
          [Bradyrhizobium sp. ORS278]
          Length = 141

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
              A +     + +   I  NI NAD+         Y R+    T +
Sbjct: 11 SMTIATSGLRAQAGRMRVISENIANADSTAAKAGGDPYRRKVPTFTSA 58


>gi|86750885|ref|YP_487381.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          HaA2]
 gi|86573913|gb|ABD08470.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          HaA2]
          Length = 141

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46
              A +     + +   I  NI NAD+         Y R+    T +
Sbjct: 11 SMGIATSGLRAQAGRMRVISENIANADSTAQKPGGDPYRRKVPTFTSA 58


>gi|15642195|ref|NP_231827.1| flagellar basal body rod protein FlgF [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586260|ref|ZP_01676050.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 2740-80]
 gi|121726526|ref|ZP_01679775.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V52]
 gi|147673274|ref|YP_001217713.1| flagellar basal body rod protein FlgF [Vibrio cholerae O395]
 gi|153213604|ref|ZP_01948877.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 1587]
 gi|153817120|ref|ZP_01969787.1| flagellar basal-body rod protein FlgF [Vibrio cholerae NCTC 8457]
 gi|153820819|ref|ZP_01973486.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33]
 gi|153825314|ref|ZP_01977981.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-2]
 gi|153829346|ref|ZP_01982013.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 623-39]
 gi|183179566|ref|ZP_02957777.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-3]
 gi|227082320|ref|YP_002810871.1| flagellar basal-body rod protein FlgF [Vibrio cholerae M66-2]
 gi|229507727|ref|ZP_04397232.1| flagellar basal-body rod protein FlgF [Vibrio cholerae BX 330286]
 gi|229512078|ref|ZP_04401557.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33]
 gi|229513840|ref|ZP_04403302.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TMA 21]
 gi|229519214|ref|ZP_04408657.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC9]
 gi|229522145|ref|ZP_04411562.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TM 11079-80]
 gi|229524191|ref|ZP_04413596.1| flagellar basal-body rod protein FlgF [Vibrio cholerae bv. albensis
           VL426]
 gi|229528799|ref|ZP_04418189.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 12129(1)]
 gi|229607231|ref|YP_002877879.1| flagellar basal body rod protein FlgF [Vibrio cholerae MJ-1236]
 gi|254225802|ref|ZP_04919407.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V51]
 gi|254849325|ref|ZP_05238675.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MO10]
 gi|255747105|ref|ZP_05421050.1| flagellar basal-body rod protein FlgF [Vibrio cholera CIRS 101]
 gi|262161351|ref|ZP_06030461.1| flagellar basal-body rod protein FlgF [Vibrio cholerae INDRE 91/1]
 gi|262167778|ref|ZP_06035480.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC27]
 gi|262191688|ref|ZP_06049864.1| flagellar basal-body rod protein FlgF [Vibrio cholerae CT 5369-93]
 gi|297580842|ref|ZP_06942767.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC385]
 gi|298500426|ref|ZP_07010231.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MAK 757]
 gi|9656752|gb|AAF95341.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549526|gb|EAX59552.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 2740-80]
 gi|121630979|gb|EAX63358.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V52]
 gi|124115803|gb|EAY34623.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 1587]
 gi|125621708|gb|EAZ50037.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V51]
 gi|126512388|gb|EAZ74982.1| flagellar basal-body rod protein FlgF [Vibrio cholerae NCTC 8457]
 gi|126521611|gb|EAZ78834.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33]
 gi|146315157|gb|ABQ19696.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O395]
 gi|148875187|gb|EDL73322.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 623-39]
 gi|149740998|gb|EDM55067.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-2]
 gi|183012977|gb|EDT88277.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-3]
 gi|227010208|gb|ACP06420.1| flagellar basal-body rod protein FlgF [Vibrio cholerae M66-2]
 gi|227014092|gb|ACP10302.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O395]
 gi|229332573|gb|EEN98059.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 12129(1)]
 gi|229337772|gb|EEO02789.1| flagellar basal-body rod protein FlgF [Vibrio cholerae bv. albensis
           VL426]
 gi|229341070|gb|EEO06075.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TM 11079-80]
 gi|229343903|gb|EEO08878.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC9]
 gi|229349021|gb|EEO13978.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TMA 21]
 gi|229352043|gb|EEO16984.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33]
 gi|229355232|gb|EEO20153.1| flagellar basal-body rod protein FlgF [Vibrio cholerae BX 330286]
 gi|229369886|gb|ACQ60309.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MJ-1236]
 gi|254845030|gb|EET23444.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MO10]
 gi|255735507|gb|EET90907.1| flagellar basal-body rod protein FlgF [Vibrio cholera CIRS 101]
 gi|262023843|gb|EEY42542.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC27]
 gi|262028662|gb|EEY47316.1| flagellar basal-body rod protein FlgF [Vibrio cholerae INDRE 91/1]
 gi|262032427|gb|EEY50989.1| flagellar basal-body rod protein FlgF [Vibrio cholerae CT 5369-93]
 gi|297534668|gb|EFH73504.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC385]
 gi|297541119|gb|EFH77173.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MAK 757]
 gi|327484715|gb|AEA79122.1| Flagellar basal-body rod protein FlgF [Vibrio cholerae LMA3894-4]
          Length = 249

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 7/103 (6%), Positives = 19/103 (18%), Gaps = 6/103 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           +      A +      Q       N+ N     +       R          +       
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
               N     +      +        + ++ +    +    N 
Sbjct: 61  RPGHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNG 103



 Score = 40.4 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           I         VN   E++ LI +++ + +  K++   ++M
Sbjct: 199 ILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEM 238


>gi|315127352|ref|YP_004069355.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas sp. SM9913]
 gi|315015866|gb|ADT69204.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas sp. SM9913]
          Length = 247

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 12/126 (9%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENKN 61
             A +    + Q  A    N+ NA+   +       R                Q     N
Sbjct: 6   YIAASGAKQSMQGLALKANNLANANTTGFKSDFAQARSMQAFGEGLPTRVFAMQERPGSN 65

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           M    +     ++       ++ ++++         N     +  L  + E         
Sbjct: 66  MTSGGVVETGRSLDIAMSDNAWLSVQDA------SGNEAYTKVGSLNITAEGMLTTSDGR 119

Query: 122 ILGKTV 127
            +    
Sbjct: 120 QVIGEG 125



 Score = 37.3 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 21/50 (42%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +         VN   E+  +I  ++ + +  KL+   +++ +   + ++
Sbjct: 196 QVLGGTLEKSNVNPVHEMVDMISHQRQFELQVKLMKTAEEIDERQEQLMR 245


>gi|298712478|emb|CBJ33250.1| EsV-1-12 [Ectocarpus siliculosus]
          Length = 1368

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 39/416 (9%), Positives = 81/416 (19%), Gaps = 15/416 (3%)

Query: 31  ADNKN---YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK 87
           A++     Y R  +  +         +  + +       ++A+SS +        F +  
Sbjct: 479 ANDDGGAIYARSSSTVSWDGNGTQFSSNSANDDG---GAIYAYSSNVSWDGDGTQFSSNS 535

Query: 88  EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
                   Y +S T           S S N     +G                S+     
Sbjct: 536 AYYDGGAIYADSSTVSWDGDGTQFNSNSANDDGGAIGAGYSSTVSWDGDGTQFSSNSAND 595

Query: 148 IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEII-- 205
                         +           ND      A       +           +     
Sbjct: 596 DGGAIYAYTATVSWDGDGTQFSSNSANDDGGAIGAGYSSTVSWDGDGTQFSSNSANFYGG 655

Query: 206 -------GISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVV 258
                   +S             ++            N       T  S ++    DG  
Sbjct: 656 AIYADSSTVSWDGDGTQFSSNSANNSDGGAIGAGYSSNVSWDGDGTQFSSNSANNSDGGA 715

Query: 259 VSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLF 318
           +S+   S V             + V          + V       +       ++   ++
Sbjct: 716 ISALFSSKVSWDGDGTQFSSNSANVSGGAIGAGYSSTVSWDGDVTQFSSNSAYDDGGAIY 775

Query: 319 IADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHY 378
                   D    Q  S +   +       S          +F  N  N  G      + 
Sbjct: 776 AYSSNVSWDGDGTQFSSNSAYDDGGSIYVYSSTVSWDGDGTQFSSNSANDDGGNGGAVYI 835

Query: 379 CDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                ++          ++    +          K    +      S         
Sbjct: 836 YVGEFQDEPATISGCNFSDNVAEDAGGAVNTLAGKQSFSACHFKGNSAGGKTGADN 891


>gi|167034942|ref|YP_001670173.1| flagellar basal body rod protein FlgF [Pseudomonas putida GB-1]
 gi|166861430|gb|ABY99837.1| flagellar basal-body rod protein FlgF [Pseudomonas putida GB-1]
          Length = 246

 Score = 40.4 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/241 (7%), Positives = 54/241 (22%), Gaps = 17/241 (7%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVT 54
           +  +   A      +    A  +   N+ N     +       R   +   S        
Sbjct: 1   MDKLLYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +  +  L      +      + F A++          +        L       
Sbjct: 59  TERPATDFSEGPLVETGRDLDVAVTGKGFIAVQ------APDGSEAYVRTGSLNIDALGV 112

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVV 173
            +  +   +       A    Q     A     IR+   D  +  E+  ++    +   +
Sbjct: 113 LRAGNGMPVMGNGGPIAIPPEQKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKGL 172

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
              +     +        D    ++    E   ++ +    + + +       +      
Sbjct: 173 TKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNTA 232

Query: 234 D 234
            
Sbjct: 233 K 233


>gi|300024609|ref|YP_003757220.1| flagellar basal body rod protein [Hyphomicrobium denitrificans
          ATCC 51888]
 gi|299526430|gb|ADJ24899.1| flagellar basal body rod protein [Hyphomicrobium denitrificans
          ATCC 51888]
          Length = 125

 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 17 ASQQFASIVRNIENADNKNYVRRDTM 42
          A +Q + I +N+ NA+   Y  RD  
Sbjct: 18 AQRQ-SVISQNVANANTPGYKARDVE 42


>gi|317182784|dbj|BAJ60568.1| flagellar basal body rod protein FlgC [Helicobacter pylori F57]
          Length = 161

 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|307721136|ref|YP_003892276.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979229|gb|ADN09264.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 273

 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/207 (9%), Positives = 54/207 (26%), Gaps = 12/207 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   +  +         +  +I  N+ N +   +     +         V       K  
Sbjct: 1   MQTGYYSSAAGMVTQFNRLDTIANNLANVNTNGFKEDQLI---------VGDFMRLYKEA 51

Query: 63  FDKVLHAHSSAIGQQRLLQSFE---ALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            D++ +A++S  G   L ++      + +  +     N   +        S E     + 
Sbjct: 52  RDELSNANNSKAGAAFLNRTMTRAPQIVDSYTNYSVGNMQKSSNSLDFALSQEGLFFAVK 111

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                +   D A  +        ++  ++     +  +  IS            N  I  
Sbjct: 112 TPEGVRLTRDGAFTLNDEGKLITKQGYEVLPSDYQNSQEGISFATTDSIIEVDKNGQILT 171

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIG 206
              +               + + +++ 
Sbjct: 172 NVPNSASLVQNKKLFIAQPESLKDLVK 198


>gi|261339374|ref|ZP_05967232.1| flagellar basal-body rod protein FlgC [Enterobacter cancerogenus
          ATCC 35316]
 gi|288318175|gb|EFC57113.1| flagellar basal-body rod protein FlgC [Enterobacter cancerogenus
          ATCC 35316]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NAD+        Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNLANADSVAGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVSDV 67


>gi|220934391|ref|YP_002513290.1| flagellar basal-body rod protein FlgB [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995701|gb|ACL72303.1| flagellar basal-body rod protein FlgB [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 130

 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 11/116 (9%)

Query: 1   MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58
           MSL          +     S++   +  N+ NAD  NY  RD     +            
Sbjct: 1   MSLSFDKALGIHADALQLRSRRLELLASNLANADTPNYKARDIDFRAALSQAQGGGV--- 57

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  ++  H+S +  Q      E L  + +      N+    + +   S  + 
Sbjct: 58  ------GLMRTHASHLSVQGGGVGGEPLYRIPNQPSLDGNTVDAQLEQAAFSENAV 107


>gi|145298489|ref|YP_001141330.1| flagellar basal body rod protein FlgC [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|142851261|gb|ABO89582.1| flagellar basal body rod protein FlgC [Aeromonas salmonicida
          subsp. salmonicida A449]
          Length = 139

 Score = 40.4 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VF+ A +  +  S +  ++  N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFKVFDIAGSAMSAQSVRLNTVASNMANADSVSSSVEKTYHARRPIFAA 51



 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++     KMLQ  L  
Sbjct: 99  NVNMVEEMADMINASRSYQTNVQVADSAKKMLQQTLNL 136


>gi|323975932|gb|EGB71026.1| flagellar basal-body rod protein FlgC [Escherichia coli TW10509]
          Length = 143

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGALKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|318605240|emb|CBY26738.1| flagellar basal-body rod protein FlgC [Yersinia enterocolitica
          subsp. palearctica Y11]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NAD+        Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQIIDD 70


>gi|308050375|ref|YP_003913941.1| flagellar basal-body rod protein FlgB [Ferrimonas balearica DSM
          9799]
 gi|307632565|gb|ADN76867.1| flagellar basal-body rod protein FlgB [Ferrimonas balearica DSM
          9799]
          Length = 131

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 2/39 (5%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
                     +  NI NAD  NY  +D     +     
Sbjct: 17 GVRAERA--EVLSSNIANADTPNYKAQDLDFEQALAGAK 53


>gi|218703523|ref|YP_002411042.1| flagellar basal body rod protein FlgC [Escherichia coli UMN026]
 gi|293403353|ref|ZP_06647444.1| flgC [Escherichia coli FVEC1412]
 gi|298378965|ref|ZP_06988846.1| flagellar basal-body rod protein FlgC [Escherichia coli FVEC1302]
 gi|300900363|ref|ZP_07118538.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 198-1]
 gi|218430620|emb|CAR11486.1| putative Flagellar basal-body rod protein flgC ( proximal rod
           protein) [Escherichia coli UMN026]
 gi|291429206|gb|EFF02226.1| flgC [Escherichia coli FVEC1412]
 gi|298280078|gb|EFI21582.1| flagellar basal-body rod protein FlgC [Escherichia coli FVEC1302]
 gi|300356119|gb|EFJ71989.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 198-1]
          Length = 143

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTIRLNTVASNLANANAPAGSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|191636884|ref|YP_001986050.1| MMPL precursor [Lactobacillus casei BL23]
 gi|190711186|emb|CAQ65192.1| MMPL precursor [Lactobacillus casei BL23]
 gi|327380915|gb|AEA52391.1| Transport protein [Lactobacillus casei LC2W]
 gi|327384087|gb|AEA55561.1| Transport protein [Lactobacillus casei BD-II]
          Length = 1103

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 95/398 (23%), Gaps = 4/398 (1%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++ A    +           +S    I NAD      +   T  +  N       S N  
Sbjct: 473 TINAGLTDSVKGLKQVQAGLSSANTQITNADVAG-STQQVQTLANGTNTLSSGASSLNSG 531

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +        S   G  +L     AL   ++     +      + +L  +    +  +++ 
Sbjct: 532 IGQYTSGVASLNTGIGQLSSQLPALSSGVNTLSTSSTQLAKGMDQLSGNSTVLASGMNQL 591

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 + +    + +   +     +       ++       +  L E+   +  ++  T
Sbjct: 592 SDKSGELTSGMNKLASQVQNLTGSAQQIVTLINQLPNGSQLTQPILEEIAKFSGGVQQLT 651

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                  D +   +     ++  I   T   +     + + +          +      +
Sbjct: 652 NGTSSLGDGIKTLNNGTTALNSGISTLTSGTHQLSSGIGSLNSQVPSLVSGVNQLNTGSS 711

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                + +       V   ++Q +   +  +   ++     V   Q+ L    + L    
Sbjct: 712 QLAAQNGTLNSGAAQVASGADQVNTGVQ-TLNTKVKAISEQVTTMQSGLTSADKALGT-- 768

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 +             G K                   Y S+ + +     V K  
Sbjct: 769 IADGSTSMKQYLTELQKSYLGKKFYIPNATLKSKTFKPALTTYMSDGNKITKLTVVLKGD 828

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                       +            + D    +    +
Sbjct: 829 PSTDAAAKQIEAIKTDMTAKLKHTPLADATVAVGGQTS 866


>gi|325982370|ref|YP_004294772.1| flagellar basal-body rod protein FlgF [Nitrosomonas sp. AL212]
 gi|325531889|gb|ADZ26610.1| flagellar basal-body rod protein FlgF [Nitrosomonas sp. AL212]
          Length = 247

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 54/224 (24%), Gaps = 13/224 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           +  +   +    N+   Q A++  N+ NA    Y          P     +  R+     
Sbjct: 1   MDRLIYTSMTGANHTLNQQATVAHNLANASTTGYRSETNAFRAVPLFGDGLPTRAFVVDS 60

Query: 59  --NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     L      +        + +++                   L+        
Sbjct: 61  TTGSDFTTGPLETTGRDLDVAIRGPGWISVQ------LDNGEEAYTRNGSLQVGPNGLLL 114

Query: 117 NLSEDILGK-TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             +   +   T + +     +        V  +  +A       +  ++        +  
Sbjct: 115 TQNGLKVKGDTGVISVPPETRITIGVDGTVSTVPLNALPNTVAIVGRIKLVNPPEESLVK 174

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
                   K      +D R  L+    E   ++ +    + + +
Sbjct: 175 GADGLFRQKDGKEALVDARVRLIDGTLEGSNVNVVHEMVSMIAL 218


>gi|258514000|ref|YP_003190222.1| flagellar basal-body rod protein FlgB [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257777705|gb|ACV61599.1| flagellar basal-body rod protein FlgB [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 4/23 (17%), Positives = 7/23 (30%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           I  NI N +   + +       
Sbjct: 25 VIANNIANINTPGFKKSSVAFES 47


>gi|262166284|ref|ZP_06034021.1| flagellar basal-body rod protein FlgC [Vibrio mimicus VM223]
 gi|262026000|gb|EEY44668.1| flagellar basal-body rod protein FlgC [Vibrio mimicus VM223]
          Length = 71

 Score = 40.4 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 32  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 69


>gi|304316910|ref|YP_003852055.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778412|gb|ADL68971.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 149

 Score = 40.4 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M  L   + +         +   I +NI N D  
Sbjct: 1  MGFLNSIDISATGLTAERLRMDVISQNIANVDTT 34


>gi|254437478|ref|ZP_05050972.1| hypothetical protein OA307_2348 [Octadecabacter antarcticus 307]
 gi|198252924|gb|EDY77238.1| hypothetical protein OA307_2348 [Octadecabacter antarcticus 307]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 56/216 (25%), Gaps = 17/216 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVR-----RDTMTTISPENVTVVTQRSENKN 61
            + A N   N S +     +N+ N +   +       R+     S +         +++ 
Sbjct: 5   IHIALNSMRNLSTEMRVNAQNMANLNVPGFRADLTVTREASFLTSLDQYQSRVYSQQSQE 64

Query: 62  MF----DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                    L +  S +        +  ++  +  D             L      +  +
Sbjct: 65  ALFSDDAGSLQSTGSEMDTAIRGNGYFFVEPALGGDAA-----LSRRGDLGFDDGRFLVD 119

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN---LRRFLSELTVVN 174
            + + L  T +   +             Q             ++           ++++ 
Sbjct: 120 GAGNRLLDTELAPIQMPPTRRIVVEETGQIQMELMGTPEGTLVAGPIIATSMAEGISLIK 179

Query: 175 DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                   S +      DQR  + Q   E   ++TI
Sbjct: 180 SPDGHIRPSNNTELPEPDQRARIAQGFLESSNVNTI 215


>gi|224534383|ref|ZP_03674961.1| flagellar basal-body rod protein FlgB [Borrelia spielmanii A14S]
 gi|224514485|gb|EEF84801.1| flagellar basal-body rod protein FlgB [Borrelia spielmanii A14S]
          Length = 135

 Score = 40.4 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + +  NI N D  N+ R       
Sbjct: 23 SVVSDNIANVDTPNFKRSKISFEA 46


>gi|171321214|ref|ZP_02910184.1| protein of unknown function DUF1078 domain protein [Burkholderia
           ambifaria MEX-5]
 gi|171093524|gb|EDT38694.1| protein of unknown function DUF1078 domain protein [Burkholderia
           ambifaria MEX-5]
          Length = 234

 Score = 40.4 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 42/205 (20%), Gaps = 22/205 (10%)

Query: 19  QQFASIVRNIENADNKNYVR----RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
           Q+  +  RN+ N     Y R    +D +                        L       
Sbjct: 17  QRAETAARNLSNVATPGYRREIAFQDMLANDVTPAGGGPPIHRLTD-FSPGRLVRTGDPF 75

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEV 134
                   F  ++         +            + +      +              +
Sbjct: 76  DLAIDGDGFFQVQ-------TDSGPAYTRTGAFLRAADGRLVTRAG----------GWPL 118

Query: 135 VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR 194
                     +   R DAD  +                    ++      +   D +  R
Sbjct: 119 QGAHGDIVVSLDGWRVDADGTVLDHGVPTSVIRVATFDAPSRLQRIADGLYAPRDTVGMR 178

Query: 195 DVLLQKISEIIGISTIVRNNNDMVV 219
           D   +     +  S +   ++ + +
Sbjct: 179 DAPTRLAQGFVETSNVSAADDMVRL 203


>gi|194365682|ref|YP_002028292.1| flagellar basal body rod protein FlgC [Stenotrophomonas
          maltophilia R551-3]
 gi|254521317|ref|ZP_05133372.1| flagellar basal-body rod protein FlgC [Stenotrophomonas sp.
          SKA14]
 gi|194348486|gb|ACF51609.1| flagellar basal-body rod protein FlgC [Stenotrophomonas
          maltophilia R551-3]
 gi|219718908|gb|EED37433.1| flagellar basal-body rod protein FlgC [Stenotrophomonas sp.
          SKA14]
          Length = 135

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS L +F+ A +     S + ++I  N+ NAD  
Sbjct: 1  MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTV 34


>gi|91976172|ref|YP_568831.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          BisB5]
 gi|91682628|gb|ABE38930.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          BisB5]
          Length = 141

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
              A +     + +   I  NI N    A       Y R+    T +
Sbjct: 11 SMGIATSGLRAQAGRMRVISENIANAESTAQTAGGDPYRRKVPTFTSA 58


>gi|293409440|ref|ZP_06653016.1| flagellar basal-body rod protein FlgC [Escherichia coli B354]
 gi|291469908|gb|EFF12392.1| flagellar basal-body rod protein FlgC [Escherichia coli B354]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVGDV 67


>gi|212639569|ref|YP_002316089.1| flagellar basal body rod protein FlgC [Anoxybacillus flavithermus
          WK1]
 gi|212561049|gb|ACJ34104.1| Flagellar basal body rod protein FlgC [Anoxybacillus flavithermus
          WK1]
          Length = 145

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          +   FN + +       +   I  N+ N D  
Sbjct: 1  MFQSFNVSASALTAQRLRMDVISANMANVDTT 32


>gi|149188064|ref|ZP_01866359.1| flagellar basal-body rod protein C [Vibrio shilonii AK1]
 gi|148838052|gb|EDL54994.1| flagellar basal-body rod protein C [Vibrio shilonii AK1]
          Length = 138

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+      + Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKETYKARHAVFGA 51



 Score = 36.5 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML + L  
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLSTLRM 136


>gi|146307868|ref|YP_001188333.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina ymp]
 gi|145576069|gb|ABP85601.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp]
          Length = 246

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/235 (5%), Positives = 48/235 (20%), Gaps = 13/235 (5%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSENK 60
              +     N +    +   N+ N     +       R   +   S              
Sbjct: 5   LYVSMTGAQNNTLALRAHANNLANVSTSGFRRDFEQARSMPLFGESYPARVFAMSERPGT 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     L      +      + + A++          +      + L        +  + 
Sbjct: 65  DFRAGSLQETGRDLDVAIGGKGWIAVQ------APDGSEAYVRTASLNIDALGVLRTGNG 118

Query: 121 DILGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +       A    Q         +       +  +  E+  ++    +   +      
Sbjct: 119 LPVMGNAGPIAVPPEQKVEIGQDGTISIRALGENPNVLAEVDRIKLVNPDPKSLEKGTDG 178

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
               K       D    +     E   ++ +      + +      ++      +
Sbjct: 179 LIRVKGQPEVEADATVQVTSGFLEASNVNAVEEMTAILSLSRQFELSVKMMRTAE 233


>gi|74101659|gb|AAZ99749.1| FlgFL [Aeromonas hydrophila]
          Length = 244

 Score = 40.4 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/151 (6%), Positives = 27/151 (17%), Gaps = 20/151 (13%)

Query: 6   VFNKAQNI----CNNASQQFASIVRNIENADNKNYV---RRDTMTTISPENVTVVTQRS- 57
           +   A +           +      N+ N +   +     R +   ++ +          
Sbjct: 4   LIYTAMSGAQHTLMAQQIR----ANNLANVNTAGFRTDFERVSAYALTGDGYLSRVMARE 59

Query: 58  --ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                +     L      +      + F  ++                   L    E   
Sbjct: 60  EMAGTDFKAGALMQTGRKLDVAVRGEGFITVQ------TADGKEAYTRAGNLEVDAEGLL 113

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                 +LG                    + 
Sbjct: 114 TLNGRPVLGDGGEMVLPAYRDLSFGKDGSLS 144


>gi|323705448|ref|ZP_08117023.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323535350|gb|EGB25126.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 149

 Score = 40.4 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M  L   + +         +   I +NI N D  
Sbjct: 1  MGFLNSIDISATGLTAERLRMDVISQNIANVDTT 34


>gi|260767771|ref|ZP_05876706.1| flagellar basal-body rod protein FlgC [Vibrio furnissii CIP
          102972]
 gi|260617280|gb|EEX42464.1| flagellar basal-body rod protein FlgC [Vibrio furnissii CIP
          102972]
 gi|315179397|gb|ADT86311.1| flagellar basal-body rod protein FlgC [Vibrio furnissii NCTC
          11218]
          Length = 138

 Score = 40.4 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|323495379|ref|ZP_08100456.1| flagellar basal body rod protein FlgC [Vibrio brasiliensis LMG
          20546]
 gi|323310302|gb|EGA63489.1| flagellar basal body rod protein FlgC [Vibrio brasiliensis LMG
          20546]
          Length = 138

 Score = 40.4 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 36.5 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + +L   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQLADASKQMLLRTLQM 136


>gi|84514832|ref|ZP_01002195.1| flagellar proximal rod protein FlgF [Loktanella vestfoldensis
           SKA53]
 gi|84510991|gb|EAQ07445.1| flagellar proximal rod protein FlgF [Loktanella vestfoldensis
           SKA53]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 49/211 (23%), Gaps = 7/211 (3%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVR--RDTMTTISPENVTVVTQRSENKNMFD 64
            + A N   N S +     +N+ NA+   +      T              R  ++    
Sbjct: 5   IHIALNNLRNISSELRVNAQNMANANVPGFRADLSVTREASFLTPFDQFRSRVYSQEASQ 64

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT--HYISKLRDSLESYSKNLSEDI 122
            +       +             +        +   T       L   L+ +  + + + 
Sbjct: 65  SLFSTDEGGLQNTEAEMDLAIQGQGYFYIAPSSGGDTALSRRGDLSFDLDRFVVDGAGNK 124

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN---LRRFLSELTVVNDAIKF 179
           L    ++  +             Q      D      ++          ++ +       
Sbjct: 125 LLDVALNPIQLPPTRRIVVEETGQIQMELLDAPEGTFVAGPIIATSQADDVVLSKSPDGH 184

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                       DQR  L Q   E   + TI
Sbjct: 185 IRPVGQADLPEPDQRARLTQGFLENSNVDTI 215


>gi|225552255|ref|ZP_03773195.1| flagellar basal-body rod protein FlgB [Borrelia sp. SV1]
 gi|225371253|gb|EEH00683.1| flagellar basal-body rod protein FlgB [Borrelia sp. SV1]
          Length = 135

 Score = 40.4 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVISDNIANVDTPNFKRSKISFES 46


>gi|254255085|ref|ZP_04948402.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158]
 gi|124899730|gb|EAY71573.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158]
          Length = 133

 Score = 40.4 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-----YVRRDTMTTISPEN 49
          MS   +   A +     + +  +I  N+ NAD        Y  R  +     E 
Sbjct: 2  MSFKDISQIAGSAMAAQTVRLDTIASNLANADTAGTEGTAYRARKPVFAAVYEG 55



 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 20/39 (51%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             V+  EE++ ++   ++++ + +++     M Q LL  
Sbjct: 92  SNVSAVEEMTDMMAASRAFSTNAEVLSRVKAMQQDLLRL 130


>gi|91776307|ref|YP_546063.1| flagellar basal-body rod protein FlgC [Methylobacillus
          flagellatus KT]
 gi|91710294|gb|ABE50222.1| flagellar basal-body rod protein FlgC [Methylobacillus
          flagellatus KT]
          Length = 135

 Score = 40.4 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL  VFN + +  +   Q+   +  N+ NAD+        Y  +  + +  P N     
Sbjct: 1  MSLFNVFNISGSAMSAQGQRLNVVASNLANADSVTSSNGQPYRTKHIVFSAVPVNAKGDA 60

Query: 55 QRSENKNMFDKV 66
          Q  + + + +  
Sbjct: 61 QGVKVQQIVEDQ 72



 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             Y     VN+ EE+  +I   +SY  + + +     ML
Sbjct: 89  NGYVAMPNVNVTEEMVNMISASRSYQNNVETMNAAKSML 127


>gi|297380732|gb|ADI35619.1| flagellar basal-body rod protein FlgC [Helicobacter pylori v225d]
          Length = 161

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|261838846|gb|ACX98612.1| flagellar basal-body rod protein [Helicobacter pylori 51]
          Length = 161

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|228933056|ref|ZP_04095919.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826657|gb|EEM72428.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 249

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 195 NGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 241



 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 51/222 (22%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +S      LL    A           N +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSDTDF--LLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +     A     I    +      +   ++   
Sbjct: 120 TTSGAFVMGENHERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMT 221


>gi|109948140|ref|YP_665368.1| flagellar basal body rod protein FlgC [Helicobacter acinonychis
          str. Sheeba]
 gi|109715361|emb|CAK00369.1| flagellar basal-body rod protein [Helicobacter acinonychis str.
          Sheeba]
          Length = 161

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|26991075|ref|NP_746500.1| flagellar basal body rod protein FlgF [Pseudomonas putida KT2440]
 gi|24986109|gb|AAN69964.1|AE016634_13 flagellar basal-body rod protein FlgF [Pseudomonas putida KT2440]
          Length = 246

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/241 (7%), Positives = 54/241 (22%), Gaps = 17/241 (7%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVT 54
           +  +   A      +    A  +   N+ N     +       R   +   S        
Sbjct: 1   MDKLLYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +  +  L      +      + F A++          +        L       
Sbjct: 59  TERPATDFSEGPLVETGRDLDVAVTGKGFIAVQ------APDGSEAYVRTGSLNIDALGV 112

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVV 173
            +  +   +       A    Q     A     IR+   D  +  E+  ++    +   +
Sbjct: 113 LRAGNGMPVIGNGGPIAIPPEQKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKGL 172

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
              +     +        D    ++    E   ++ +    + + +       +      
Sbjct: 173 TKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNTA 232

Query: 234 D 234
            
Sbjct: 233 K 233


>gi|300936123|ref|ZP_07151062.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 21-1]
 gi|300458701|gb|EFK22194.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 21-1]
          Length = 143

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 37/123 (30%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +V 
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLVG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|260682026|ref|YP_003213311.1| flagellar basal-body rod protein [Clostridium difficile CD196]
 gi|260685624|ref|YP_003216757.1| flagellar basal-body rod protein [Clostridium difficile R20291]
 gi|260208189|emb|CBA60524.1| flagellar basal-body rod protein [Clostridium difficile CD196]
 gi|260211640|emb|CBE01891.1| flagellar basal-body rod protein [Clostridium difficile R20291]
          Length = 128

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 12/62 (19%)

Query: 7  FNKAQNICNNASQQFASIVRNIENAD-NKN-----YVRRDTMTTISP------ENVTVVT 54
             + +     S +   I  N+ N +  +      Y R+      +         V V +
Sbjct: 1  MRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTS 60

Query: 55 QR 56
            
Sbjct: 61 VE 62



 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN-- 430
           D+I+    + N     +  A     V+  E   N +G L    +   D     + V++  
Sbjct: 16  DIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTSVEDDKSPLKEVYDPS 75

Query: 431 ---HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
                   Y     VN+  E++ LI   ++Y+ +   +     M+   LE 
Sbjct: 76  HPDAKPNGYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKALEI 126


>gi|2494517|sp|P70910|FLGB_BORHE RecName: Full=Flagellar basal-body rod protein flgB
 gi|1621620|gb|AAB51473.1| flagellar rod protein FlgB [Borrelia hermsii]
          Length = 135

 Score = 40.4 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVIADNIANVDTPNFKRSKVTFEA 46


>gi|332161323|ref|YP_004297900.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605243|emb|CBY26741.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325665553|gb|ADZ42197.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860605|emb|CBX70902.1| flagellar basal-body rod protein flgF [Yersinia enterocolitica
           W22703]
          Length = 251

 Score = 40.4 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 35/155 (22%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRSQLAAMRAVPIDGPSMATRTMVTASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ S +         ++G    
Sbjct: 67  SQGTMNYSGRPLDVALQQDGYLAVRLPDGTEAYTRNGNIQISADGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|71906392|ref|YP_283979.1| hypothetical protein Daro_0753 [Dechloromonas aromatica RCB]
 gi|71846013|gb|AAZ45509.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB]
          Length = 247

 Score = 40.4 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/128 (8%), Positives = 27/128 (21%), Gaps = 6/128 (4%)

Query: 3   LLAVFNKAQNI---CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
           +  +   A                   N+ NA    +  ++      P     +  R+  
Sbjct: 1   MDRLIYTAMTGAKHVFMQQAG---TANNLANASTIGFKAQEHRFRAVPVQGEGMPTRAFV 57

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
            +     +      +   R L      K  +       +        L   +    +  S
Sbjct: 58  VDASVSDVMDEGPLMFTGRNLDVAVQGKGWIGVQLPDGSEAYTRAGSLDVDVTGLLQTKS 117

Query: 120 EDILGKTV 127
              +    
Sbjct: 118 GYPVAGDG 125


>gi|16760051|ref|NP_455668.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|16764531|ref|NP_460146.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|29142178|ref|NP_805520.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56413838|ref|YP_150913.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179692|ref|YP_216109.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|161614602|ref|YP_001588567.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167553037|ref|ZP_02346787.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167994039|ref|ZP_02575131.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234101|ref|ZP_02659159.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168237257|ref|ZP_02662315.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168244774|ref|ZP_02669706.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168264032|ref|ZP_02686005.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168467127|ref|ZP_02700969.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168822618|ref|ZP_02834618.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194446237|ref|YP_002040429.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194448226|ref|YP_002045174.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194469652|ref|ZP_03075636.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194737972|ref|YP_002114174.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197250491|ref|YP_002146868.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197264065|ref|ZP_03164139.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197362761|ref|YP_002142398.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|198244048|ref|YP_002215962.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200389763|ref|ZP_03216374.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204930701|ref|ZP_03221574.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205353087|ref|YP_002226888.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|207857317|ref|YP_002243968.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213161846|ref|ZP_03347556.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213419883|ref|ZP_03352949.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
 gi|213424678|ref|ZP_03357443.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|213582035|ref|ZP_03363861.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213615928|ref|ZP_03371754.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
 gi|213648924|ref|ZP_03378977.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213865507|ref|ZP_03387626.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|224584321|ref|YP_002638119.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|238911005|ref|ZP_04654842.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|289828582|ref|ZP_06546407.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|60392283|sp|P0A1I7|FLGC_SALTY RecName: Full=Flagellar basal-body rod protein flgC; AltName:
          Full=Putative proximal rod protein
 gi|60392284|sp|P0A1I8|FLGC_SALTI RecName: Full=Flagellar basal-body rod protein flgC; AltName:
          Full=Putative proximal rod protein
 gi|25298909|pir||AH0639 probable flagellar basal-body rod protein FlgC (proximal rod
          protein) STY1214 [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16419692|gb|AAL20105.1| flagellar biosynthesis protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|16502345|emb|CAD08299.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|29137808|gb|AAO69369.1| putative flagellar basal-body rod protein FlgC [Salmonella
          enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56128095|gb|AAV77601.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62127325|gb|AAX65028.1| flagellar biosynthesis, cell-proximal portion of basal-body rod
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|161363966|gb|ABX67734.1| hypothetical protein SPAB_02352 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404900|gb|ACF65122.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194406530|gb|ACF66749.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194456016|gb|EDX44855.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194713474|gb|ACF92695.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630453|gb|EDX49079.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197094238|emb|CAR59743.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|197214194|gb|ACH51591.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197242320|gb|EDY24940.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197289825|gb|EDY29186.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197938564|gb|ACH75897.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199602208|gb|EDZ00754.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204320160|gb|EDZ05364.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205272868|emb|CAR37797.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205322443|gb|EDZ10282.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205328049|gb|EDZ14813.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331940|gb|EDZ18704.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205336413|gb|EDZ23177.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205341032|gb|EDZ27796.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205347372|gb|EDZ34003.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206709120|emb|CAR33453.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224468848|gb|ACN46678.1| flagellar basal body rod protein [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|261246386|emb|CBG24195.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267992949|gb|ACY87834.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301157716|emb|CBW17208.1| putative flagellar basal-body rod protein FlgC (proximal rod
          protein) [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312912162|dbj|BAJ36136.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|320086385|emb|CBY96158.1| Flagellar basal-body rod protein flgC [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223793|gb|EFX48856.1| Flagellar basal-body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322616545|gb|EFY13454.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322620514|gb|EFY17378.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622508|gb|EFY19353.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322629659|gb|EFY26434.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632621|gb|EFY29367.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322636884|gb|EFY33587.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641578|gb|EFY38216.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322644068|gb|EFY40614.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322653957|gb|EFY50280.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658489|gb|EFY54751.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322663347|gb|EFY59549.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322670081|gb|EFY66221.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674855|gb|EFY70946.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322676675|gb|EFY72742.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682597|gb|EFY78616.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322686650|gb|EFY82629.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322714162|gb|EFZ05733.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323129445|gb|ADX16875.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|323195764|gb|EFZ80940.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323198344|gb|EFZ83448.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323203172|gb|EFZ88202.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323209175|gb|EFZ94112.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323209679|gb|EFZ94608.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323217865|gb|EGA02580.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323222153|gb|EGA06537.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323224925|gb|EGA09183.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323229667|gb|EGA13790.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323232892|gb|EGA16988.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240627|gb|EGA24669.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323242941|gb|EGA26962.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323250258|gb|EGA34147.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323252633|gb|EGA36471.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323258839|gb|EGA42492.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323261028|gb|EGA44621.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323266937|gb|EGA50422.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323269978|gb|EGA53427.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326623710|gb|EGE30055.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326628167|gb|EGE34510.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
 gi|332988066|gb|AEF07049.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG 60

Query: 49 NVTVVTQ 55
           V V + 
Sbjct: 61 GVKVASV 67


>gi|307546967|ref|YP_003899446.1| flagellar basal body rod protein FlgF [Halomonas elongata DSM 2581]
 gi|307218991|emb|CBV44261.1| flagellar basal body rod protein FlgF [Halomonas elongata DSM 2581]
          Length = 253

 Score = 40.4 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 8/118 (6%), Positives = 25/118 (21%), Gaps = 1/118 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +    + +Q   +  N+ N     +  +       P           +   
Sbjct: 1   MDRMLYTAMSGVRQSMEQQGVVSHNLSNVSTTGFRAQLHAMRAVPVQGDGELDTRVSVAA 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLS 119
                      + +               A    + S        L+   +   ++  
Sbjct: 61  STPGSDFSPGPMNRTGRTLDVAMQGNAWLAVQASDGSEAYTRRGDLQVDGDGLLRSAG 118


>gi|76811430|ref|YP_333623.1| Hep_Hag family protein [Burkholderia pseudomallei 1710b]
 gi|254258590|ref|ZP_04949644.1| hemagglutinin family protein [Burkholderia pseudomallei 1710a]
 gi|76580883|gb|ABA50358.1| Hep_Hag family [Burkholderia pseudomallei 1710b]
 gi|254217279|gb|EET06663.1| hemagglutinin family protein [Burkholderia pseudomallei 1710a]
          Length = 1068

 Score = 40.4 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/450 (6%), Positives = 83/450 (18%), Gaps = 4/450 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 298 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 354

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 355 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 414

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 415 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 474

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           + +    N
Sbjct: 475 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTASGTNASATGEN 534

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  ++                           +     + 
Sbjct: 535 STATGTASTASGSNSTANGTNSTASGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 594

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 595 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 654

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY-ARNSIGWLEKNRSDSHD 420
             +  N            D+   +       G N+  T  +  A  S        S +  
Sbjct: 655 TASGSNSTANGANSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASG 714

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            +  +       +   S   G +     + 
Sbjct: 715 NNSTASGTNASATGENSTATGTDSAASGTN 744


>gi|88799018|ref|ZP_01114599.1| Flagellar basal body protein [Reinekea sp. MED297]
 gi|88778245|gb|EAR09439.1| Flagellar basal body protein [Reinekea sp. MED297]
          Length = 132

 Score = 40.4 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 1  MSLLA---VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN 49
          MS L          N     S++ + +  N+ NAD   +  RD         
Sbjct: 1  MSALGFENSLGIHDNALLVRSERSSVLANNLANADTPGFKARDMDFKAILRG 52


>gi|238764390|ref|ZP_04625340.1| Flagellar basal-body rod protein flgC [Yersinia kristensenii ATCC
          33638]
 gi|238697416|gb|EEP90183.1| Flagellar basal-body rod protein flgC [Yersinia kristensenii ATCC
          33638]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NAD+        Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQVIDD 70


>gi|238788313|ref|ZP_04632107.1| Flagellar basal-body rod protein flgC [Yersinia frederiksenii
          ATCC 33641]
 gi|238723559|gb|EEQ15205.1| Flagellar basal-body rod protein flgC [Yersinia frederiksenii
          ATCC 33641]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NAD+        Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQVVDD 70


>gi|296103613|ref|YP_003613759.1| Flagellar basal-body rod protein, FlgC [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295058072|gb|ADF62810.1| Flagellar basal-body rod protein, FlgC [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT-ISPENVTVV 53
          MSL +VF+ + +     S++      N+ NAD+        Y  R  + +  +     + 
Sbjct: 1  MSLFSVFDISGSAMAAQSRRLNVSASNMANADSVAGPDGQPYRARQVVFSVDASVGQEIG 60

Query: 54 TQRSEN 59
            +  +
Sbjct: 61 GVQVSD 66


>gi|238751760|ref|ZP_04613248.1| Flagellar basal-body rod protein flgC [Yersinia rohdei ATCC
          43380]
 gi|238710031|gb|EEQ02261.1| Flagellar basal-body rod protein flgC [Yersinia rohdei ATCC
          43380]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ A +  +  SQ+      N+ NAD+        Y  +  +  ++ +      
Sbjct: 1  MSLLNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAQIVDD 70


>gi|190574265|ref|YP_001972110.1| flagellar basal body rod protein FlgC [Stenotrophomonas
          maltophilia K279a]
 gi|190012187|emb|CAQ45810.1| putative flagellar basal-body rod protein FlgC [Stenotrophomonas
          maltophilia K279a]
          Length = 135

 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS L +F+ A +     S + ++I  N+ NAD  
Sbjct: 1  MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTV 34


>gi|332140544|ref|YP_004426282.1| flagellar basal-body rod protein FlgC [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327550566|gb|AEA97284.1| flagellar basal-body rod protein FlgC [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 140

 Score = 40.4 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  V   +       + +  +   NI NA+
Sbjct: 1  MSLFNVMQISSTGMEAENVRLNTTASNIANAN 32


>gi|207108222|ref|ZP_03242384.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 137

 Score = 40.4 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +      N+ N +   + R D +T  
Sbjct: 1  MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGD 43


>gi|206895357|ref|YP_002246680.1| flagellar basal-body rod protein FlgB [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206737974|gb|ACI17052.1| flagellar basal-body rod protein FlgB [Coprothermobacter
          proteolyticus DSM 5265]
          Length = 113

 Score = 40.4 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 19 QQFASIVRNIENADNKNYVRRDTMTTIS 46
          Q   ++  N+ N D   Y R++      
Sbjct: 15 QNLQAVQSNLANVDTPGYKRQEVDFQTV 42


>gi|317011794|gb|ADU85541.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          SouthAfrica7]
          Length = 161

 Score = 40.4 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|307293790|ref|ZP_07573634.1| flagellar basal-body rod protein FlgB [Sphingobium
          chlorophenolicum L-1]
 gi|306879941|gb|EFN11158.1| flagellar basal-body rod protein FlgB [Sphingobium
          chlorophenolicum L-1]
          Length = 122

 Score = 40.4 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQRSENKNMFDKVLHAHS 71
          SQ+ + +  NI NA    Y  RD     +       +  +         +     +   S
Sbjct: 19 SQRLSLLASNIANASTPGYKARDIDFESALKEATSRQGKSAADVSQAVDDSMGYRVPLQS 78

Query: 72 SAIGQQRLLQS 82
          S  G    L +
Sbjct: 79 SLDGNTVELST 89


>gi|255028426|ref|ZP_05300377.1| flagellar basal body rod protein FlgC [Listeria monocytogenes LO28]
          Length = 124

 Score = 40.4 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 53  VSEISSDTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 110

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 111 NEKMME 116


>gi|170737036|ref|YP_001778296.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          MC0-3]
 gi|169819224|gb|ACA93806.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          MC0-3]
          Length = 132

 Score = 40.4 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-----YVRRDTMTTI----SPENVT 51
          MS   +   A +  +  + +  +I  N+ NA         Y  R  +           V 
Sbjct: 1  MSFKDISQIAGSALSAQTVRLNTIASNLANAGTSGTEETAYRARKPVFASVFQNGGARVQ 60

Query: 52 VVTQRSENKNMFDK 65
          V+   + +  +  +
Sbjct: 61 VLDVIATDDALAAR 74


>gi|23092313|gb|AAN08638.1| FlgC [Aeromonas hydrophila]
          Length = 139

 Score = 40.4 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VF+ A +  +  S +  ++  N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFKVFDIAGSAMSAQSVRLNTVASNMANADSVSSSVENTYHARRPIFAA 51


>gi|217059|dbj|BAA02862.1| FlgC [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|581758|emb|CAA36310.1| unnamed protein product [Salmonella enterica subsp. enterica
          serovar Typhimurium]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG 60

Query: 49 NVTVVTQ 55
           V V + 
Sbjct: 61 GVKVASV 67


>gi|308185345|ref|YP_003929478.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          SJM180]
 gi|308061265|gb|ADO03161.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          SJM180]
          Length = 161

 Score = 40.0 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +   I  NI NA+     +   Y R++ + 
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVF 48


>gi|149911704|ref|ZP_01900312.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Moritella sp. PE36]
 gi|149805234|gb|EDM65251.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Moritella sp. PE36]
          Length = 140

 Score = 40.0 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  VF+ A +  +  S +  +   N+ NA+
Sbjct: 1  MSLFRVFDIAGSAMSAQSVRLNTTASNLANAN 32



 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 33/131 (25%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
              +      ++    N                       +             +     
Sbjct: 6   VFDIAGSAMSAQSVRLNTTASNLANANSVSSSAGETYKARYPIFQAQLDQANFSQNEAVG 65

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +       SD+  ++  +          Y     VN+ EE++ +I   +SY  + ++   
Sbjct: 66  VNVAGIVESDAPLVNEFNPNHPLADENGYVYRPNVNIMEEMANMISASRSYQTNVQIADA 125

Query: 468 TDKMLQTLLEG 478
             KML   L  
Sbjct: 126 AKKMLNKTLAL 136


>gi|153946948|ref|YP_001399635.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           IP 31758]
 gi|152958443|gb|ABS45904.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis
           IP 31758]
          Length = 243

 Score = 40.0 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 53/208 (25%), Gaps = 3/208 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +  N +  Q      N+ N + + + R D     + + +            
Sbjct: 1   MDKLLYTAVSGANRSLSQQQIHANNLANTNTQGF-RADLEKATATQVMGSGYNSRVAVLS 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +  +    +++ +           + + A             ++  S +         +
Sbjct: 60  QNAGVDMTPASLQETGRDLDIAVKNQGLIAVLSGGREVYTRNGQMEVSADGDLTINGLPV 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELTVVNDAIKFK 180
           LG                    +  I      +   EI  ++     +     N+     
Sbjct: 120 LGDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQLRKNNRGLLV 179

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGIS 208
           +     A D   Q      + S +  IS
Sbjct: 180 SNRGPAARDEAVQVVNKHLESSNVSAIS 207


>gi|294500941|ref|YP_003564641.1| flagellar basal-body rod protein FlgC [Bacillus megaterium QM
          B1551]
 gi|294350878|gb|ADE71207.1| flagellar basal-body rod protein FlgC [Bacillus megaterium QM
          B1551]
          Length = 149

 Score = 40.0 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 10/55 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTI 45
          M++    N   +       +   +  N+ NA+             Y R+  +   
Sbjct: 1  MTIFRNMNITSSALTANRLRMDVVSSNMANAETTRGTYVNGEWQPYKRKMVVIQS 55


>gi|165869539|ref|ZP_02214198.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0488]
 gi|190566290|ref|ZP_03019208.1| putative flagellar basal-body rod protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|218902886|ref|YP_002450720.1| putative flagellar basal-body rod protein [Bacillus cereus AH820]
 gi|227815455|ref|YP_002815464.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           CDC 684]
 gi|164714979|gb|EDR20497.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           A0488]
 gi|190562425|gb|EDV16392.1| putative flagellar basal-body rod protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|218539299|gb|ACK91697.1| putative flagellar basal-body rod protein [Bacillus cereus AH820]
 gi|227003269|gb|ACP13012.1| putative flagellar basal-body rod protein [Bacillus anthracis str.
           CDC 684]
          Length = 249

 Score = 40.0 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 46/173 (26%)

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                    +++ +     A                T   +    S+       G+    
Sbjct: 69  QGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMG 128

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                  +     +      +       + +A + T     E     I    K+ + +  
Sbjct: 129 ENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQRENKSFTLAEG 188

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                      +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 189 NIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 241



 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 49/214 (22%), Gaps = 18/214 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +S      LL    A           N +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSDTDF--LLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +     A     I    +      +   ++   
Sbjct: 120 TTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            K  T ++ +  D  +    +   + E   +   
Sbjct: 180 NKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMT 213


>gi|23015787|ref|ZP_00055554.1| COG4786: Flagellar basal body rod protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 246

 Score = 40.0 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/110 (9%), Positives = 24/110 (21%), Gaps = 4/110 (3%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK----VLHAHSSAI 74
           +Q   +  N+ NA+   +   + M            +    K  F +    +       +
Sbjct: 17  RQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAIGGKLAFVQDVGVLRDTREGPL 76

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
            +      F    +     +             R        N     + 
Sbjct: 77  TKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNSQGYAVM 126


>gi|323139652|ref|ZP_08074694.1| flagellar basal-body rod protein FlgC [Methylocystis sp. ATCC
          49242]
 gi|322395084|gb|EFX97643.1| flagellar basal-body rod protein FlgC [Methylocystis sp. ATCC
          49242]
          Length = 139

 Score = 40.0 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 10/67 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTT---ISPENVTV 52
          L A    A       S +   +  N+ NA    +      YVR+             V +
Sbjct: 5  LDASLKVAGAGLAAQSARLRIVSENMANAQSTGNTPGADPYVRKTISFANELDRASGVRL 64

Query: 53 VTQRSEN 59
          V      
Sbjct: 65 VRVNQIG 71


>gi|227533462|ref|ZP_03963511.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188912|gb|EEI68979.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1103

 Score = 40.0 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 95/398 (23%), Gaps = 4/398 (1%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++ A    +           +S    I NAD      +   T  +  N       S N  
Sbjct: 473 TINAGLTDSVKGLKQVQAGLSSANTQITNADVAG-STQQVQTLANGTNTLSSGASSLNSG 531

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +        S   G  +L     AL   ++     +      + +L  +    +  +++ 
Sbjct: 532 IGQYTSGVASLNTGIGQLSSQLPALSSGVNTLSTSSTQLAKGMDQLSGNSTLLASGMNQL 591

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 + +    + +   +     +       ++       +  L E+   +  ++  T
Sbjct: 592 SDKSGELTSGMNKLASQVQNLTGSAQQIVTLINQLPNGSQLTQSILEEIAKFSGGVQQLT 651

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                  D +   +     ++  I   T   +     + + +          +      +
Sbjct: 652 NGTSSLGDGIKTLNNGTTALNSGISTLTSGTHQLSSGIGSLNSQVPSLVSGVNQLNTGSS 711

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                + +       V   ++Q +   +  +   ++     V   Q+ L    + L    
Sbjct: 712 QLAGQNGTLNSGAAQVASGADQINTGVQ-TLNTKVKAISEQVTTMQSGLTSADKALGT-- 768

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 +             G K                   Y S+ + +     V K  
Sbjct: 769 IADGSTSMKQYLTELQKSYLGKKFYIPNATLKSKTFKPALTTYMSDGNKITKLTVVLKGD 828

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                       +            + D    +    +
Sbjct: 829 PSTDAAAKQIEAIKTDMTAKLKHTPLADATVAVGGQTS 866


>gi|218288292|ref|ZP_03492591.1| flagellar basal-body rod protein FlgC [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218241651|gb|EED08824.1| flagellar basal-body rod protein FlgC [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 144

 Score = 40.0 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 4/31 (12%), Positives = 8/31 (25%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK 34
              + + +           I  NI N +  
Sbjct: 4  NTSMDISASGLAANQLWLNVIANNIANVNTT 34



 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
               Y  +  VNL  ++  LI+  ++Y  +        +M
Sbjct: 96  AVNGYVESSNVNLTTQMVDLIQATRAYQANATAFDAAKQM 135


>gi|126653431|ref|ZP_01725527.1| flagellar hook-basal body protein [Bacillus sp. B14905]
 gi|126589787|gb|EAZ83920.1| flagellar hook-basal body protein [Bacillus sp. B14905]
          Length = 125

 Score = 40.0 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 15/44 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +L     A N       +  +I  NI N++   +  ++      
Sbjct: 1  MLRTMITATNTMGQLQNKLDTISNNIANSNTTGFKAKEASFNEL 44


>gi|332284017|ref|YP_004415928.1| flagellar basal body rod protein FlgC [Pusillimonas sp. T7-7]
 gi|330427970|gb|AEC19304.1| flagellar basal body rod protein FlgC [Pusillimonas sp. T7-7]
          Length = 138

 Score = 40.0 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVT 51
          MS  ++F  A +     SQ+      N+ NAD+        Y  R  +  ++P    
Sbjct: 1  MSTSSIFQIAGSALTAQSQRMNVTASNLANADSVAGPDGQPYRARQVVFQMAPVAGQ 57


>gi|327254552|gb|EGE66168.1| flagellar basal-body rod protein FlgC [Escherichia coli STEC_7v]
          Length = 143

 Score = 40.0 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPAGSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|297474642|ref|XP_002687422.1| PREDICTED: hCG1818434-like [Bos taurus]
 gi|296487719|gb|DAA29832.1| hCG1818434-like [Bos taurus]
          Length = 4669

 Score = 40.0 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/427 (7%), Positives = 84/427 (19%), Gaps = 14/427 (3%)

Query: 23   SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSS----AIGQQR 78
            +   +I  ++       +  TT +    +  +       +    L   +     ++G   
Sbjct: 3899 TTGPSIVGSETVGPSSGEAGTTATGSGTSGKSAERLGTTVSTDGLRRTTRISLVSLGTTG 3958

Query: 79   LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
                     +          S T  ++    S E             T   + E      
Sbjct: 3959 PSSGVMRTTQTSIVGLETTRSSTGVLATTSTSAEGLKTTGPSPGGLWTTGTSVEGSETTE 4018

Query: 139  NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVL- 197
            +++ +     R   + E E+              ++ +     A+         Q+    
Sbjct: 4019 SSTGKITGARRTTWESESEVATYEGTSGKFSKAAISGSSHTGRAAGAGTPAVDSQQTASL 4078

Query: 198  ---LQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR---DINFEKMNSYTVTSESNP 251
                +  +   G S      ++       G+   +               + T     + 
Sbjct: 4079 PAAARPTALGPGTSAPSGETSESRSSVPGGSETTQQPGAGSESPTLSPGVTRTTALRGSE 4138

Query: 252  IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
              +    VS   GS                       +                P+   S
Sbjct: 4139 TRVPSTGVSGLPGSTQGGSAATGGSGAGSGPTAPVSGETRTSVISGTNVPVSGAPVTPGS 4198

Query: 312  ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS---NPSFLRDGGSVSKKFLWNVKNL 368
                      G    +       +          S   + + +     +           
Sbjct: 4199 SAGSSGAPGAGGPGSETASPLSGAAGTSATGSGTSIPPSGAPVTPEPPLISTGASAGPPA 4258

Query: 369  AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
            +    +        +       +      VT       S          +  + +     
Sbjct: 4259 SSESTVTLPGATGTDVLRSGTSLPVSGGAVTPASSPGGSSATAGPGVGSATTVQVSGATG 4318

Query: 429  FNHISES 435
             + +   
Sbjct: 4319 TDVLRSG 4325


>gi|170289254|ref|YP_001739492.1| flagellar basal-body rod protein FlgB [Thermotoga sp. RQ2]
 gi|281412856|ref|YP_003346935.1| flagellar basal-body rod protein FlgB [Thermotoga naphthophila
          RKU-10]
 gi|170176757|gb|ACB09809.1| flagellar basal-body rod protein FlgB [Thermotoga sp. RQ2]
 gi|281373959|gb|ADA67521.1| flagellar basal-body rod protein FlgB [Thermotoga naphthophila
          RKU-10]
          Length = 127

 Score = 40.0 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 1/45 (2%)

Query: 3  LLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +    F   +   + A  +      NI N     Y R+       
Sbjct: 1  MFNSNFYTLKQAMDVALLRQNVHSLNIANVSTPGYKRKYVAFEEL 45


>gi|260779346|ref|ZP_05888238.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605510|gb|EEX31805.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 243

 Score = 40.0 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 37/127 (29%), Gaps = 6/127 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + ++   A +  +   +       N+ NAD   +      V    +     +  T+V   
Sbjct: 1   MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVSSVQLQGSGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S +    +  +     A+    + + +  ++     + +              S+  ++ 
Sbjct: 61  SASTRFDEGDIVKTGRALDVAVMGEGYLTVQTADGQEAYTRAGNIKVDPFGALSINGFAV 120

Query: 117 NLSEDIL 123
                 L
Sbjct: 121 IGEGGPL 127


>gi|196039147|ref|ZP_03106454.1| putative flagellar basal-body rod protein [Bacillus cereus
           NVH0597-99]
 gi|196030292|gb|EDX68892.1| putative flagellar basal-body rod protein [Bacillus cereus
           NVH0597-99]
          Length = 249

 Score = 40.0 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 195 NGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 241



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 50/222 (22%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +S      LL    A           N +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSDTDF--LLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +     A     I    +          ++   
Sbjct: 120 TTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEVNNRLIQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  D  +    +   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMT 221


>gi|239995127|ref|ZP_04715651.1| flagellar basal-body rod protein FlgC [Alteromonas macleodii ATCC
          27126]
          Length = 140

 Score = 40.0 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  V   +       + +  +   NI NA+
Sbjct: 1  MSLFNVMQISSTGMEAENVRLNTTASNIANAN 32


>gi|197103407|ref|YP_002128785.1| putative flagellar basal-body rod protein FlgC [Phenylobacterium
          zucineum HLK1]
 gi|196480683|gb|ACG80210.1| putative flagellar basal-body rod protein FlgC [Phenylobacterium
          zucineum HLK1]
          Length = 141

 Score = 40.0 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 7/45 (15%)

Query: 7  FNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTT 44
             A         +   I  NI N    A       Y R+  +  
Sbjct: 12 MAIAAMALRAQQARMRIIAENIANSQTTAATPGGDPYRRQMPIFA 56


>gi|315038977|ref|YP_004032545.1| membrane protein [Lactobacillus amylovorus GRL 1112]
 gi|312277110|gb|ADQ59750.1| membrane protein [Lactobacillus amylovorus GRL 1112]
          Length = 1214

 Score = 40.0 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 44/411 (10%), Positives = 95/411 (23%), Gaps = 15/411 (3%)

Query: 45  ISPENVTVVTQRSENK---NMFDKVLHAHSSA----IGQQRLLQSFEALKEMMSADDHYN 97
            S     V            +    +   + +     G  RL      L     A     
Sbjct: 520 QSGAQQLVGGTSRLQNGAQQLQSGTVRLQNGSNQLVSGATRLETGAGRLASGTHALQSGA 579

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           +S     +KL++   S         L       A ++ Q     + ++          ++
Sbjct: 580 SSLQSGANKLQNGANSL--QAGTKTLQNGTQQMANQLQQLSTQLSNQLSGSNKQQLAALQ 637

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +  +   + +L      I               Q      +        T        
Sbjct: 638 TALPQINSGIQQLNQAVGGIDVAQIKGLTEQLNGLQSKAREAQAQAKKAAETASNAAVSA 697

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG---KIKA 274
            V         + V   I+   + +    +  N +   G   S+             ++ 
Sbjct: 698 AVQNIKEQLAKQNVKATIDQSAVTAAATQAAYNAVGSQGGSASAGIDPNTLSSLTSSLQQ 757

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
           L  ++  V  + Q     +      + ++        ++     +A   K          
Sbjct: 758 LSTLQAQVAKLAQASNQALP-GAATALNQLSSGLSQVQSAASAGVAGANKLNSGAAALNS 816

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                            R    V +      +  +G   L N               AG 
Sbjct: 817 GAGRLSTGLGSLASGAGRLNAGVGQLNSGAGQLQSGLGTLANGAGTLNTGLGTLANGAGQ 876

Query: 395 NTNV--TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
             N    L   A   I  + +  S +  L   +  + + + +  +    VN
Sbjct: 877 LNNGVGQLASQAPQLISGIGQLNSGAGQLASGAGKLASRVPQLTTGIDTVN 927


>gi|308064340|gb|ADO06227.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          Sat464]
          Length = 161

 Score = 40.0 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|261253616|ref|ZP_05946189.1| flagellar basal-body rod protein FlgC [Vibrio orientalis CIP
          102891]
 gi|260937007|gb|EEX92996.1| flagellar basal-body rod protein FlgC [Vibrio orientalis CIP
          102891]
          Length = 138

 Score = 40.0 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|313650476|gb|EFS14883.1| flagellar basal-body rod protein flgC [Shigella flexneri 2a str.
          2457T]
 gi|332758232|gb|EGJ88555.1| flagellar basal-body rod protein flgC [Shigella flexneri 4343-70]
 gi|332759647|gb|EGJ89952.1| flagellar basal-body rod protein flgC [Shigella flexneri 2747-71]
 gi|332761418|gb|EGJ91702.1| flagellar basal-body rod protein flgC [Shigella flexneri K-671]
 gi|332767680|gb|EGJ97873.1| flagella basal body rod family protein [Shigella flexneri
          2930-71]
 gi|333004882|gb|EGK24402.1| flagellar basal-body rod protein flgC [Shigella flexneri VA-6]
 gi|333005639|gb|EGK25157.1| flagellar basal-body rod protein flgC [Shigella flexneri K-218]
 gi|333019455|gb|EGK38738.1| flagellar basal-body rod protein flgC [Shigella flexneri K-304]
 gi|333019765|gb|EGK39037.1| flagellar basal-body rod protein flgC [Shigella flexneri K-227]
          Length = 90

 Score = 40.0 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 15/83 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQRSEN---KNMFDKVLH 68
           V V   +          ++V+ 
Sbjct: 61 GVKVADVKKVRPRTNWFMNQVIR 83


>gi|313123941|ref|YP_004034200.1| adsorption protein [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280504|gb|ADQ61223.1| Putative adsorption protein [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 1854

 Score = 40.0 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 37/434 (8%), Positives = 113/434 (26%), Gaps = 25/434 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL +  +  +   N+     A+   ++ N                     V T+ S    
Sbjct: 141 SLHSNMDTIRGSLNDTRNSLATTTNDLANVKT----------------SLVDTKTSLATA 184

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
             +     +++      +                 +N  +   + L  +  S +   SE 
Sbjct: 185 TSEIANDLNNAKNSLAAVDNDLRN------GVKQASNDLSVAKTSLEATRNSLATTTSEL 238

Query: 122 ILGKTVIDNAEEVVQNF-NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFK 180
                 +  +     +    ++  + +++  A++     +      L++ +        +
Sbjct: 239 QRQTGQLSGSLSTANSMIMFNSDAIAEVKHTAEEISTTVVGGGNNLLNDSSDTLKTFTGQ 298

Query: 181 TASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
                 +   +     +  +   +            + +YT  G  L   +P   +    
Sbjct: 299 AWMWESSKSDIIPTHSIDGETVTLSAWIENPSKEAWVQMYTDKGRFLGNKIPAGGSGWSQ 358

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
            +YT+ S  +   +      S+    +    +K  L    +        + ++       
Sbjct: 359 VTYTMPSGWSVWNVVVGCGDSSGTITLSYKDVKLELGPNRTAWKPSNGDIAQLKVTADAI 418

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
            ++     G+  +V     +   +  DNK      +    +   R + +           
Sbjct: 419 KADLTNTKGDVASVKATANSLQSQITDNKNNISSVKQTADSLTTRMSNAEGNVSSLQQTT 478

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
                +      ++      +           G     +L + A      +     +   
Sbjct: 479 SGLTTRVSNTEGNVSGLQQTATKLQSDLTNAKGDI--SSLQQTANGLTSRVGNAEGNISQ 536

Query: 421 LHMKSQVVFNHISE 434
           L   +  + + +S 
Sbjct: 537 LQQTANGLTSTVSN 550


>gi|2275159|gb|AAB81411.1| FlgC [Sinorhizobium meliloti]
          Length = 138

 Score = 40.0 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 10/65 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI---SPENVTV 52
          L      + +     S +   +  NI NA +         + R+              ++
Sbjct: 3  LTLALKVSASGLQAESTRLRIVSENIANARSTGDAPGADPFRRKTISFAAEVDRASGASL 62

Query: 53 VTQRS 57
          V    
Sbjct: 63 VEVER 67


>gi|311992325|gb|ADQ26736.1| proximal rod protein [Aeromonas hydrophila]
          Length = 138

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++     KMLQ  L  
Sbjct: 98  NVNMVEEMADMINASRSYQTNVQVADSAKKMLQQTLNL 135



 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          SL  VF+ A +  +  S +  ++  N+ NAD+ +      Y  R  +   
Sbjct: 1  SLFKVFDIAGSAMSAQSVRLNTVASNMANADSVSSSVEKTYHARRPIFAA 50


>gi|257866375|ref|ZP_05646028.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           EC30]
 gi|257873109|ref|ZP_05652762.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           EC10]
 gi|257875988|ref|ZP_05655641.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           EC20]
 gi|257800333|gb|EEV29361.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           EC30]
 gi|257807273|gb|EEV36095.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           EC10]
 gi|257810154|gb|EEV38974.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus
           EC20]
          Length = 120

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 24/91 (26%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
           +   N ++Q+   I  NI N +   Y  +  +     +     +            +   
Sbjct: 9   KTAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAATEASVSQVKPK 68

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
            +      +  +   +   +   D   N   
Sbjct: 69  ITENATTSIKDNGNNVDLEVEMLDQAANGLY 99


>gi|326204629|ref|ZP_08194485.1| flagellar basal-body rod protein FlgB [Clostridium papyrosolvens
          DSM 2782]
 gi|325985196|gb|EGD46036.1| flagellar basal-body rod protein FlgB [Clostridium papyrosolvens
          DSM 2782]
          Length = 137

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            N +  +   I +N+ N D  NY R+D     
Sbjct: 15 SLNASWARNEVISQNLANVDTPNYKRKDVTFEE 47


>gi|239834448|ref|ZP_04682776.1| flagellar basal body rod protein FlgF [Ochrobactrum intermedium LMG
           3301]
 gi|239822511|gb|EEQ94080.1| flagellar basal body rod protein FlgF [Ochrobactrum intermedium LMG
           3301]
          Length = 243

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 4/124 (3%), Positives = 24/124 (19%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ N     +    T  +    +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFSSIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           ++  +             ++          ++   +
Sbjct: 61  KSFIRTEAGPMIKTDNPLDVAVKGDVWMSVSTPQGQIYTRDGRMNMLPTGDLVTVTGHPV 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|317010250|gb|ADU80830.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          India7]
          Length = 161

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|254522823|ref|ZP_05134878.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
 gi|219720414|gb|EED38939.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
          Length = 99

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 3/98 (3%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSEN 59
          +  V   A      A Q       N+ N    +  R   +           TV     + 
Sbjct: 1  MNNVMGMALGGMRAAQQGVQVAAHNVANLATPDAQRLQLQRAEDGQGGVGTTVAGADPDP 60

Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
                +L A +  +             +M+ +    +
Sbjct: 61 TAPLGDLLAARAEVVAFAANASVIRRQDQMLGSLLDRD 98


>gi|203287754|ref|YP_002222769.1| flagellar basal-body rod protein [Borrelia recurrentis A1]
 gi|201084974|gb|ACH94548.1| flagellar basal-body rod protein [Borrelia recurrentis A1]
          Length = 135

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + +  NI N D  N+ R       
Sbjct: 23 SVVADNIANVDTPNFKRSKVTFEA 46


>gi|219684621|ref|ZP_03539564.1| flagellar basal-body rod protein FlgB [Borrelia garinii PBr]
 gi|219671983|gb|EED29037.1| flagellar basal-body rod protein FlgB [Borrelia garinii PBr]
          Length = 135

 Score = 40.0 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVISDNIANVDTPNFKRSKISFES 46


>gi|289679031|ref|ZP_06499921.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv.
           syringae FF5]
          Length = 124

 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+  + +++     M+Q +L
Sbjct: 85  NVNVVEEMADMISASRSFQTNAEIMNTAKSMMQKVL 120


>gi|220924393|ref|YP_002499695.1| flagellar basal body rod protein [Methylobacterium nodulans ORS
          2060]
 gi|219949000|gb|ACL59392.1| flagellar basal body rod protein [Methylobacterium nodulans ORS
          2060]
          Length = 119

 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTM 42
           +      A++  NI NAD   Y  RD +
Sbjct: 17 LSARQ---ATVAGNIANADTPGYRARDVV 42


>gi|1086559|gb|AAB68966.1| FlgC [Agrobacterium tumefaciens]
 gi|2459712|gb|AAB71788.1| FlgC [Agrobacterium tumefaciens]
          Length = 139

 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 7/41 (17%)

Query: 12 NICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTI 45
          +     S +   +  NI NA    D      Y R+      
Sbjct: 13 SGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGS 53


>gi|71907892|ref|YP_285479.1| flagellar basal-body rod protein FlgB [Dechloromonas aromatica
          RCB]
 gi|71847513|gb|AAZ47009.1| Flagellar basal-body rod protein FlgB [Dechloromonas aromatica
          RCB]
          Length = 153

 Score = 40.0 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
                QQ   I  NI NAD   Y   D     +
Sbjct: 33 GVRAYRQQL--IASNIANADTPGYKAVDIDFEEA 64


>gi|311105725|ref|YP_003978578.1| ferric pseudobactin M114 receptor protein [Achromobacter
           xylosoxidans A8]
 gi|310760414|gb|ADP15863.1| ferric pseudobactin M114 receptor protein [Achromobacter
           xylosoxidans A8]
          Length = 792

 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 34/401 (8%), Positives = 94/401 (23%), Gaps = 18/401 (4%)

Query: 10  AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
           A                 + NA+ + Y  R      +     V      +  + +     
Sbjct: 74  AGTGLQA-----------VANANGEGYHLRRIPQGDATTLAPVTVTGMADPAVTEGTGSY 122

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
            S  +   +  Q+ + + + ++              +  ++L+    N +   L K+ + 
Sbjct: 123 TSGIVTIGKGEQTLKEIPQSVTVVTRQRMD-----DQNANTLDDVLANSTGMTLYKSPMG 177

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                 + F   + +   +            ++    L  + ++  A      +   +  
Sbjct: 178 GNYVFSRGFRVDSYQFDGVNRAFYYPQANSFTSSTVILDRVEIIRGATGLLQGAGSPSAA 237

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
               R   L +    + +     + N+          L  +           +       
Sbjct: 238 VNLVRKRPLAE--NQVQLLASGGSWNNYRADIDATGPLNASGSLRGRAVASYNDRDYFYD 295

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
           N     GV+         P   +   +   +     F + L                ++ 
Sbjct: 296 NADSRTGVLYGVLSYDLGPATTLTGGVSYEELRSTPFFHGLPHYTNGDDIGLKRSTSLSQ 355

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
           +     G       +           +    + Q  ++  +    G+V+          A
Sbjct: 356 DWNRWNGKQTTVFAELAHRFNQDWSLKLTGTSTQESNDSKYAFTEGAVNPATGLGPTMYA 415

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGW 410
           G  D   H               G   ++++          
Sbjct: 416 GIFDFSTHNKALNLDVDGAFEALGRKHSISVGASINELTSK 456


>gi|317133467|ref|YP_004092781.1| flagellar hook-basal body protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471446|gb|ADU28050.1| flagellar hook-basal body protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 239

 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 30/138 (21%), Gaps = 26/138 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-----------------TI 45
           ++     A +     S +   +  N++NAD++ +                          
Sbjct: 1   MIRGIFSAASGMIAQSDRINVMGNNLDNADSQGFKSDTATLRSFDEELALRTTDAVPVGT 60

Query: 46  SPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYIS 105
               V V        ++    L    S+         F A+            +      
Sbjct: 61  LNAGVHVSGVE---TDLSQGELQQTGSSYNIAVNGGGFFAVA------APGGQTLYTREG 111

Query: 106 KLRDSLESYSKNLSEDIL 123
                   Y    S   L
Sbjct: 112 DFAPDASGYLALPSGQRL 129


>gi|161503737|ref|YP_001570849.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865084|gb|ABX21707.1| hypothetical protein SARI_01822 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 134

 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG 60

Query: 49 NVTVVTQ 55
           V V + 
Sbjct: 61 GVKVASV 67


>gi|313497763|gb|ADR59129.1| Flagellar basal body rod protein FlgF [Pseudomonas putida BIRD-1]
          Length = 246

 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/241 (7%), Positives = 54/241 (22%), Gaps = 17/241 (7%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVT 54
           +  +   A      +    A  +   N+ N     +       R   +   S        
Sbjct: 1   MDKLLYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +  +  L      +      + F A++          +        L       
Sbjct: 59  TERPATDFSEGPLVETGRDLDVAVTGKGFVAVQ------APDGSEAYVRTGSLNIDALGV 112

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVV 173
            +  +   +       A    Q     A     IR+   D  +  E+  ++    +   +
Sbjct: 113 LRAGNGMPVIGNGGPIAIPPEQKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKGL 172

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
              +     +        D    ++    E   ++ +    + + +       +      
Sbjct: 173 TKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNTA 232

Query: 234 D 234
            
Sbjct: 233 K 233


>gi|254443396|ref|ZP_05056872.1| flagellar basal-body rod protein FlgC [Verrucomicrobiae bacterium
           DG1235]
 gi|198257704|gb|EDY82012.1| flagellar basal-body rod protein FlgC [Verrucomicrobiae bacterium
           DG1235]
          Length = 123

 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VNL  E+  LI   +SY  + +++  + +M Q  L
Sbjct: 83  NVNLTHEMVDLISASRSYEANLQVVRTSKQMAQQAL 118


>gi|56551509|ref|YP_162348.1| flagellar basal-body rod protein FlgC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|260752884|ref|YP_003225777.1| flagellar basal-body rod protein FlgC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|4378860|gb|AAD19728.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543083|gb|AAV89237.1| flagellar basal-body rod protein FlgC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552247|gb|ACV75193.1| flagellar basal-body rod protein FlgC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 134

 Score = 40.0 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM-LQTL 475
           GV+  +E+  +I+  + Y  + +++     + L TL
Sbjct: 95  GVDTAQEMVEMIETARDYQNNVQVMQTAKSLTLDTL 130


>gi|296282282|ref|ZP_06860280.1| flagellar basal-body rod protein FlgB [Citromicrobium
          bathyomarinum JL354]
          Length = 115

 Score = 40.0 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 23/81 (28%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
           +F          +Q+ A +  NI NA    Y  RD     + +     ++         
Sbjct: 4  GLFGIHGAALEIRAQRMAVLGSNIANAGTPGYKARDIDFGAALQARLAGSESEGAAQRAT 63

Query: 65 KVLHAHSSAIGQQRLLQSFEA 85
                 +++    +    E 
Sbjct: 64 VYRIPTMASLDGNTVEMGTEQ 84


>gi|170021362|ref|YP_001726316.1| flagellar basal body rod protein FlgC [Escherichia coli ATCC 8739]
 gi|170683008|ref|YP_001742371.1| flagellar basal body rod protein FlgC [Escherichia coli SMS-3-5]
 gi|188492955|ref|ZP_03000225.1| flagellar basal-body rod protein FlgC [Escherichia coli 53638]
 gi|260853464|ref|YP_003227355.1| putative lateral flagellar component of cell-proximal portion of
           basal-body rod [Escherichia coli O26:H11 str. 11368]
 gi|260866411|ref|YP_003232813.1| putative lateral flagellar component of cell-proximal portion of
           basal-body rod [Escherichia coli O111:H- str. 11128]
 gi|331645416|ref|ZP_08346520.1| flagellar basal-body rod protein FlgC [Escherichia coli M605]
 gi|331666544|ref|ZP_08367418.1| flagellar basal-body rod protein FlgC [Escherichia coli TA271]
 gi|331671802|ref|ZP_08372598.1| flagellar basal-body rod protein FlgC [Escherichia coli TA280]
 gi|169756290|gb|ACA78989.1| flagellar basal-body rod protein FlgC [Escherichia coli ATCC 8739]
 gi|170520726|gb|ACB18904.1| lateral flagellar basal-body rod protein LfgC [Escherichia coli
           SMS-3-5]
 gi|188488154|gb|EDU63257.1| flagellar basal-body rod protein FlgC [Escherichia coli 53638]
 gi|257752113|dbj|BAI23615.1| predicted lateral flagellar component of cell-proximal portion of
           basal-body rod [Escherichia coli O26:H11 str. 11368]
 gi|257762767|dbj|BAI34262.1| predicted lateral flagellar component of cell-proximal portion of
           basal-body rod [Escherichia coli O111:H- str. 11128]
 gi|323158105|gb|EFZ44204.1| flagellar basal-body rod protein FlgC [Escherichia coli EPECa14]
 gi|323171061|gb|EFZ56710.1| flagellar basal-body rod protein FlgC [Escherichia coli LT-68]
 gi|323181545|gb|EFZ66965.1| flagellar basal-body rod protein FlgC [Escherichia coli 1357]
 gi|331045578|gb|EGI17704.1| flagellar basal-body rod protein FlgC [Escherichia coli M605]
 gi|331065768|gb|EGI37652.1| flagellar basal-body rod protein FlgC [Escherichia coli TA271]
 gi|331070791|gb|EGI42150.1| flagellar basal-body rod protein FlgC [Escherichia coli TA280]
          Length = 143

 Score = 40.0 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|288940407|ref|YP_003442647.1| flagellar basal-body rod protein FlgC [Allochromatium vinosum DSM
           180]
 gi|288895779|gb|ADC61615.1| flagellar basal-body rod protein FlgC [Allochromatium vinosum DSM
           180]
          Length = 139

 Score = 40.0 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           N+ EE++ ++   +SY  + +++     +LQ  L+
Sbjct: 101 NVVEEMANMMSASRSYEANVEVLTTARSLLQRTLQ 135



 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENA 31
          MS L  +FN + +     S +  ++  N+ NA
Sbjct: 1  MSDLFRIFNTSASALTAQSVRLNTVASNMANA 32


>gi|332305616|ref|YP_004433467.1| flagellar basal-body rod protein FlgF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172945|gb|AEE22199.1| flagellar basal-body rod protein FlgF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 247

 Score = 40.0 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I         VN  EE+  +I +++ Y +  K +     +
Sbjct: 196 SIRNGMLEGSNVNPVEEMVDMISLQRHYEMQVKFMKEASDL 236


>gi|15612531|ref|NP_224184.1| flagellar basal body rod protein FlgC [Helicobacter pylori J99]
 gi|4156087|gb|AAD07040.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
          Length = 161

 Score = 40.0 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +   I  NI NA+     +   Y R++ + 
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVF 48


>gi|332206954|ref|XP_003252560.1| PREDICTED: mucin-19 [Nomascus leucogenys]
          Length = 6347

 Score = 40.0 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 42/417 (10%), Positives = 76/417 (18%), Gaps = 11/417 (2%)

Query: 33   NKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
               Y  R T  T S   VT  T+ S   ++             +             +  
Sbjct: 2394 TPGYSDRVTGATESLAGVTGTTKPSVVGSVTTGPSVTEVETTAKTSSG-GLSTTISSVGG 2452

Query: 93   DDHYNNSP--THYISKLR----DSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
                  SP  +            S +S    ++       V+     V     T    V 
Sbjct: 2453 TGTTGQSPERSGTTGPFTRLTGTSAQSAGVTMTSVQSAGVVVTTGLNVDGLGTTGKALVG 2512

Query: 147  KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
                    E    I      L +                ++              S  + 
Sbjct: 2513 SGTTGLSAEATGTIGPSNGGLEKTGPSITGSGTTRPLVTESWTAGTSS-EGQSTTSPSVR 2571

Query: 207  ISTIVRNNNDMVVYTS--DGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
             +     +    V T    G T        +      S TVT  +            +  
Sbjct: 2572 GTETTGQSAAGSVTTGPVTGYTEISGPSAGVTVTPRQSPTVTRTTGSSAAISGTTVQSLT 2631

Query: 265  SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
             +          +I  S V           R      +          +     I     
Sbjct: 2632 VSGTTRPSSGQTEITGSSVEESGTTESSAVRSGTTGPTAGVTGTNGPSSAGVTGITGSSP 2691

Query: 325  DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
             +             +    ++  +      S        +  + G    +         
Sbjct: 2692 GVTGTTGSSARSGTSIPSVGKTGTTRTSVEESSKTGPSAGITGIHGLSAEVTGTTGPSAG 2751

Query: 385  NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                  ++   T  T L         L                     S   +   G
Sbjct: 2752 VTGTTGLSAGGTGTTGLSAGVTGTAGL-SAGETGTTGLSPGVAGTTRSSAGVTERTG 2807


>gi|306813306|ref|ZP_07447499.1| flagellar basal body rod protein FlgC [Escherichia coli NC101]
 gi|305854069|gb|EFM54508.1| flagellar basal body rod protein FlgC [Escherichia coli NC101]
          Length = 143

 Score = 40.0 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLSG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|260767768|ref|ZP_05876703.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972]
 gi|260617277|gb|EEX42461.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972]
 gi|315179400|gb|ADT86314.1| flagellar basal body rod protein FlgF [Vibrio furnissii NCTC 11218]
          Length = 249

 Score = 40.0 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/130 (8%), Positives = 24/130 (18%), Gaps = 14/130 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK-- 60
           +      A +      Q       N+ N     + R D     S +              
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGF-RADLEQARSMQAYGDGLPSRVFSMT 59

Query: 61  -----NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     +      +        + A+ +    +             L        
Sbjct: 60  ERPGHNFQQGSVITTGRDLDVTVQGDGWIAVMDKTGKEGL------TRNGNLNIDANGLL 113

Query: 116 KNLSEDILGK 125
            N +   +  
Sbjct: 114 LNGNGHPVLG 123



 Score = 37.3 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           I         VN   E++ LI +++ + +  K++   + M
Sbjct: 199 ILTGAVEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAEDM 238


>gi|23016627|ref|ZP_00056381.1| COG1558: Flagellar basal body rod protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 136

 Score = 40.0 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E+  + + ++SY  +  +I  +  +L   ++ ++
Sbjct: 97  NVNPLIEMMDMREAQRSYEANMNVINASRSLLSRTIDMLR 136



 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 13/77 (16%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIEN----ADNK-N--YVRRDTMT------TISPEN 49
          L      A +     SQ+   I  N+ N    A       Y R+                
Sbjct: 4  LSKSTTIAISGMKVQSQRLRLISENLANSDSLAQTPEGLPYRRKVMTFKNELDRATGTSL 63

Query: 50 VTVVTQRSENKNMFDKV 66
          V V   R+++     + 
Sbjct: 64 VKVDKVRADSSEFQRRY 80


>gi|238916744|ref|YP_002930261.1| flagellar basal-body rod protein FlgC [Eubacterium eligens ATCC
           27750]
 gi|238872104|gb|ACR71814.1| flagellar basal-body rod protein FlgC [Eubacterium eligens ATCC
           27750]
          Length = 164

 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 6/130 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTISPENVTVVTQR 56
           +   FN + +       +   I  NI NAD         YVR+  + T      T + + 
Sbjct: 1   MFTAFNVSASGMTAQQLRTDVISENIANADTTRTSDGTPYVRKAVVFTEKTMTGTALGKS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           +              +       +         +  D   +    +  S        Y  
Sbjct: 61  AYGSYGTGAYSTFSDALRLANGGVVGNGVKVTSVYEDTSTDMEMVYDPSHPDADENGYVT 120

Query: 117 NLSEDILGKT 126
             + + + + 
Sbjct: 121 YPNVNTVQEM 130


>gi|225569981|ref|ZP_03779006.1| hypothetical protein CLOHYLEM_06076 [Clostridium hylemonae DSM
          15053]
 gi|225161451|gb|EEG74070.1| hypothetical protein CLOHYLEM_06076 [Clostridium hylemonae DSM
          15053]
          Length = 136

 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 17/55 (30%)

Query: 23 SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQ 77
              NI N D   Y  +      + +       ++ +     + +   S+ + + 
Sbjct: 33 VTSNNIANVDTPGYKSKYVTFEETFQRRLAAATKAGDGRQVRQAIAGASAVVNET 87


>gi|210135737|ref|YP_002302176.1| flagellar basal body rod protein FlgC [Helicobacter pylori P12]
 gi|210133705|gb|ACJ08696.1| flagellar basal-body rod protein FlgC [Helicobacter pylori P12]
          Length = 161

 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI 45
          L+ F+ +    +    +   I  NI NA+     +   Y R++ +   
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50


>gi|238751763|ref|ZP_04613251.1| Flagellar basal-body rod protein flgF [Yersinia rohdei ATCC 43380]
 gi|238710034|gb|EEQ02264.1| Flagellar basal-body rod protein flgF [Yersinia rohdei ATCC 43380]
          Length = 251

 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 34/155 (21%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSMPTRTMVTASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ +           ++G    
Sbjct: 67  SQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGIMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|227873524|ref|ZP_03991769.1| flagellar basal-body rod protein [Oribacterium sinus F0268]
 gi|227840614|gb|EEJ50999.1| flagellar basal-body rod protein [Oribacterium sinus F0268]
          Length = 256

 Score = 40.0 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/183 (7%), Positives = 55/183 (30%), Gaps = 6/183 (3%)

Query: 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGG 355
            +            + E               +        T       R     + + G
Sbjct: 64  AVASRIKSASKTYTDYEQGSYELTDGIYDTAISGKGFFAVSTPQGTRYTRGGAFSVNENG 123

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR--NSIGWLEK 413
            +    +  V++  G+  ++ +   + + +             T+    +  +   +   
Sbjct: 124 VLELAGVGKVQSEEGHDIVLPNDNFAIDPDGSIFDPNSTGNTRTVYGTLKVVDFADYNAL 183

Query: 414 NRSDSHDLHMKSQVVF----NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
           ++ D++        +     + I+        VN+ +E++ ++  +++   + +++   D
Sbjct: 184 HKEDNNLFSTNQTELKKPADSSINWKMLEKSNVNMVDEMTTMMSSQRALQSAAQMLRMYD 243

Query: 470 KML 472
            ++
Sbjct: 244 TVM 246


>gi|308068649|ref|YP_003870254.1| flagellar basal-body rod protein FlgB [Paenibacillus polymyxa
          E681]
 gi|305857928|gb|ADM69716.1| flagellar basal-body rod protein FlgB [Paenibacillus polymyxa
          E681]
          Length = 135

 Score = 40.0 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58
          M+LL    F K Q     A+ +   +  NI NAD   + R +       +          
Sbjct: 1  MNLLGDMSFQKLQAGVQAANTRQRVMADNISNADTPYFKRSEVSFEELLQQQMDGDVTPL 60

Query: 59 NKNMFDKV 66
             + +  
Sbjct: 61 RGKVTNSR 68


>gi|209521587|ref|ZP_03270285.1| flagellar basal-body rod protein FlgC [Burkholderia sp. H160]
 gi|209497970|gb|EDZ98127.1| flagellar basal-body rod protein FlgC [Burkholderia sp. H160]
          Length = 141

 Score = 40.0 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENV 50
          SL+ +F  A +  +  S++      N+ NA          Y  +  +  ++P   
Sbjct: 3  SLMNIFGVAGSAMSAQSERLNVTASNLANADSTTGPDGQPYKAKQVVFAVNPLGG 57


>gi|46578731|ref|YP_009539.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          str. Hildenborough]
 gi|120603705|ref|YP_968105.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          DP4]
 gi|46448143|gb|AAS94798.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          str. Hildenborough]
 gi|120563934|gb|ABM29678.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          DP4]
 gi|311232603|gb|ADP85457.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          RCH1]
          Length = 145

 Score = 40.0 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          M  +   +   +           I  N+ NA      +   Y R+ T+   +
Sbjct: 1  MDFMTALDIGASALTAERTNMNIISMNLANAKTTRTAEGGPYRRKTTIMAAT 52



 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           N+ EE++ L+  ++ Y  +   +     M    LE  +
Sbjct: 108 NVVEEMANLMTAQRGYEANVTTVDTVKAMYSKALEIGR 145


>gi|293395581|ref|ZP_06639864.1| flagellar basal-body rod protein FlgC [Serratia odorifera DSM
          4582]
 gi|291421900|gb|EFE95146.1| flagellar basal-body rod protein FlgC [Serratia odorifera DSM
          4582]
          Length = 134

 Score = 40.0 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ + +  +  SQ+      N+ NAD+ +      Y  +  +  ++        
Sbjct: 1  MSLLNIFDISGSALSAQSQRLNVSASNMANADSVSGPDGQPYRAKQVVFEVAAAPGQPTG 60

Query: 55 QRSENKNMFD 64
                 + D
Sbjct: 61 GVRVASIVDD 70


>gi|113969603|ref|YP_733396.1| flagellar basal body rod protein FlgB [Shewanella sp. MR-4]
 gi|114046835|ref|YP_737385.1| flagellar basal body rod protein FlgB [Shewanella sp. MR-7]
 gi|113884287|gb|ABI38339.1| flagellar basal-body rod protein FlgB [Shewanella sp. MR-4]
 gi|113888277|gb|ABI42328.1| flagellar basal-body rod protein FlgB [Shewanella sp. MR-7]
          Length = 135

 Score = 40.0 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
                     I  NI NAD  +Y  RD   + +        Q+  +
Sbjct: 17 GIRAERA--EVISSNIANADTPHYKARDVDFSAALNVAKTQQQQRNS 61


>gi|294339842|emb|CAZ88205.1| putative flagellar basal-body rod protein FlgF [Thiomonas sp. 3As]
          Length = 245

 Score = 40.0 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 29/128 (22%), Gaps = 12/128 (9%)

Query: 5   AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV------VTQRSE 58
                A        +Q A    N+ N +   Y          P            T +  
Sbjct: 2   DTLWIAATGARAVLRQQAVTTNNLANVNTTGYRGEQAQFRALPVYGNALPTSAYTTVQGN 61

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + N+ +  ++     +        + A++          ++       L+ S        
Sbjct: 62  SANLQEGPINHTGRNLDVAIRGSGWIAVQ------ATNGDTAYTRNGDLQVSASGILSTS 115

Query: 119 SEDILGKT 126
               +   
Sbjct: 116 DGRPVLGQ 123


>gi|124516313|gb|EAY57821.1| Flagellar basal-body rod protein FlgC [Leptospirillum rubarum]
          Length = 145

 Score = 40.0 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 6/55 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTISPEN 49
          M        A         +   +  N+ N+ +        + RRD +       
Sbjct: 1  MGFSDAMRIAAGGMEAERVRMNVLAGNLANSQSVHGNPRGVFERRDVIFAAVRPG 55


>gi|2916794|emb|CAA11960.1| flagellar basal-body rod protein [Sinorhizobium meliloti]
          Length = 139

 Score = 40.0 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 10/65 (15%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI---SPENVTV 52
          L      + +     S +   +  NI NA +         + R+              ++
Sbjct: 4  LTLALKVSASGLQAESTRLRIVSENIANARSTGDAPGADPFRRKTISFAAEVDRASGASL 63

Query: 53 VTQRS 57
          V    
Sbjct: 64 VEVER 68


>gi|50954402|ref|YP_061690.1| flagellar basal-body rod protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950884|gb|AAT88585.1| flagellar basal-body rod protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 132

 Score = 40.0 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            G++L  +++ LI  +++Y  +   +     M Q+ L+ 
Sbjct: 91  TGIDLSVQMTNLIMAQRAYQANANTVSSARYMYQSALQI 129


>gi|254227984|ref|ZP_04921414.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|262396034|ref|YP_003287887.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|151939480|gb|EDN58308.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
 gi|262339628|gb|ACY53422.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25]
          Length = 243

 Score = 40.0 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 12/164 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + ++   A +  +   +       N+ NAD   +      VR   M     +  T+V   
Sbjct: 1   MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSVEMQGPGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S +       +      +    + + + A++          N        ++        
Sbjct: 61  SASTRFDSGDIMKTGRPLDVAIMGEGYLAVE------TPAGNEAYTRAGNIQVDTFGAMT 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                +LG+       +  +   +   +V  I      EI    
Sbjct: 115 INGFPVLGENGPLVVPDYQKIEISERGQVSVIPPGGGAEIVAGT 158


>gi|323165582|gb|EFZ51369.1| flagellar basal-body rod protein FlgC [Shigella sonnei 53G]
          Length = 134

 Score = 40.0 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|242278629|ref|YP_002990758.1| flagellar basal body rod protein FlgB [Desulfovibrio salexigens
          DSM 2638]
 gi|242121523|gb|ACS79219.1| flagellar basal-body rod protein FlgB [Desulfovibrio salexigens
          DSM 2638]
          Length = 136

 Score = 40.0 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 3/24 (12%), Positives = 7/24 (29%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            +  N+ N +   Y  +      
Sbjct: 24 NLVSSNLANVNTPGYKEKRLEFEE 47


>gi|83647176|ref|YP_435611.1| flagellar basal body rod protein FlgB [Hahella chejuensis KCTC
          2396]
 gi|83635219|gb|ABC31186.1| Flagellar basal body protein [Hahella chejuensis KCTC 2396]
          Length = 131

 Score = 40.0 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          M++         +   N  +++   +  NI NAD   +  RD      
Sbjct: 1  MAISFDKALGIHEQALNVRTRRAEVLANNIANADTPGFRARDIDFKAV 48


>gi|326796599|ref|YP_004314419.1| flagellar basal-body rod protein FlgC [Marinomonas mediterranea
          MMB-1]
 gi|326547363|gb|ADZ92583.1| flagellar basal-body rod protein FlgC [Marinomonas mediterranea
          MMB-1]
          Length = 149

 Score = 40.0 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +F  + +  +  + +  ++  NI N D
Sbjct: 1  MSLNNIFAISGSAMSAQTIRLNTVASNIANVD 32


>gi|323698499|ref|ZP_08110411.1| flagellar basal-body rod protein FlgB [Desulfovibrio sp. ND132]
 gi|323458431|gb|EGB14296.1| flagellar basal-body rod protein FlgB [Desulfovibrio
          desulfuricans ND132]
          Length = 136

 Score = 39.6 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 6/23 (26%), Gaps = 1/23 (4%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
              NI N +   Y  R      
Sbjct: 26 VTG-NIANVNTPGYKARRLEFEE 47


>gi|270262403|ref|ZP_06190674.1| flagellar basal-body rod protein FlgC [Serratia odorifera 4Rx13]
 gi|270043087|gb|EFA16180.1| flagellar basal-body rod protein FlgC [Serratia odorifera 4Rx13]
          Length = 134

 Score = 39.6 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSLL +F+ + +  +  SQ+      N+ NAD+        Y  +  +  ++        
Sbjct: 1  MSLLNIFDISGSALSAQSQRMNVSASNMANADSVTGPDGEPYRAKQVVFEVAAAAGQPTG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSQVVDD 70


>gi|203284215|ref|YP_002221955.1| flagellar basal-body rod protein [Borrelia duttonii Ly]
 gi|201083658|gb|ACH93249.1| flagellar basal-body rod protein [Borrelia duttonii Ly]
          Length = 135

 Score = 39.6 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + +  NI N D  N+ R       
Sbjct: 23 SVVADNIANVDTPNFKRSKVTFEA 46


>gi|163850061|ref|YP_001638104.1| flagellar basal body rod protein FlgC [Methylobacterium
          extorquens PA1]
 gi|218528664|ref|YP_002419480.1| flagellar basal body rod protein FlgC [Methylobacterium
          chloromethanicum CM4]
 gi|240137195|ref|YP_002961664.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Methylobacterium extorquens AM1]
 gi|254559207|ref|YP_003066302.1| cell-proximal portion of basal-body rod biosynthesis protein
          [Methylobacterium extorquens DM4]
 gi|163661666|gb|ABY29033.1| flagellar basal-body rod protein FlgC [Methylobacterium
          extorquens PA1]
 gi|218520967|gb|ACK81552.1| flagellar basal-body rod protein FlgC [Methylobacterium
          chloromethanicum CM4]
 gi|240007161|gb|ACS38387.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Methylobacterium extorquens AM1]
 gi|254266485|emb|CAX22249.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Methylobacterium extorquens DM4]
          Length = 138

 Score = 39.6 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
          LL+    A       S +   +  N+ NA +         Y R+        +    V  
Sbjct: 5  LLSASRLASAGLEAQSLRMRVVSENLANAQSTGATPGADPYARKTVTFRAELDRAAGVAS 64

Query: 56 RSENKNMFDK 65
              +   D 
Sbjct: 65 VRLREIGTDN 74


>gi|288940410|ref|YP_003442650.1| flagellar basal-body rod protein FlgF [Allochromatium vinosum DSM
           180]
 gi|288895782|gb|ADC61618.1| flagellar basal-body rod protein FlgF [Allochromatium vinosum DSM
           180]
          Length = 246

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 29/124 (23%), Gaps = 6/124 (4%)

Query: 7   FNKAQNICN--NASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
              A +       +Q   +   N+ NA+   + R+      +      V    +   + +
Sbjct: 5   LYLAMSGAKETAYAQSINN--HNLANANTTGF-RQALAYAYTAPVRGPVYDSRDYVQVGN 61

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS-PTHYISKLRDSLESYSKNLSEDIL 123
           +VL      +             E        +          L+       +N     +
Sbjct: 62  QVLDFCPGTLQSTERDLDVAIQGEGFLVVQTEDGGEAYTRAGNLQIDATGVLRNERGLAV 121

Query: 124 GKTV 127
               
Sbjct: 122 LGDG 125


>gi|218887374|ref|YP_002436695.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          str. 'Miyazaki F']
 gi|218758328|gb|ACL09227.1| flagellar basal-body rod protein FlgC [Desulfovibrio vulgaris
          str. 'Miyazaki F']
          Length = 145

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTI 45
          M  +   +   +  N        I  N+ N           Y R+ T+   
Sbjct: 1  MDFMTAIDIGASALNAERTNMNIISMNLANVKTTRTEQGGPYRRKTTIMAA 51



 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           N+ EE++ L+  ++ Y  +   I     M    LE  +
Sbjct: 108 NVVEEMASLMTAQRGYEANVTTIDTVKAMYTKALEISR 145


>gi|295096227|emb|CBK85317.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|208435438|ref|YP_002267104.1| flagellar basal-body rod protein [Helicobacter pylori G27]
 gi|308183713|ref|YP_003927840.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          PeCan4]
 gi|208433367|gb|ACI28238.1| flagellar basal-body rod protein [Helicobacter pylori G27]
 gi|308065898|gb|ADO07790.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          PeCan4]
          Length = 161

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +   I  NI NA+     +   Y R++ + 
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVF 48


>gi|118197762|ref|YP_874155.1| hypothetical protein YS40_142 [Thermus phage phiYS40]
 gi|116266453|gb|ABJ91536.1| hypothetical protein YS40_142 [Thermus phage phiYS40]
          Length = 1014

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 41/420 (9%), Positives = 88/420 (20%), Gaps = 23/420 (5%)

Query: 7   FNKAQN---------ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57
           F+ A +             +      + RNI            T        V   +   
Sbjct: 502 FSIATSAAAVSVGSLGLAASLSANNLVGRNI-----------LTSAASVGAGVLAGSAAF 550

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                   V  A+ +   +   ++            D  N S                  
Sbjct: 551 LTDFYLQSVNKAYDTFYSRFTQIRLLPQQIREQLGGDVANVSRQFIFGGRVFPANQGFTT 610

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA- 176
                    +  +   + ++ +  +  +      A+         +    +    + D  
Sbjct: 611 EEYLGTSARLFASIGGLSRSVDNFSSALLNSARVANLFGTSIAEAVNLVATSRRALIDER 670

Query: 177 --IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
             I+       +   F       L   S  I I   +   +    + +  T L       
Sbjct: 671 RAIRGAFLLGSEYSAFTKAFSEALISASTSIAIRQGLNPYDYFNTFLTAQTVLRNFSNYQ 730

Query: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
           I      +  +  +    F + +    +         I+A L   D       + L ++ 
Sbjct: 731 IARLAERNPEIVQQGVSTFNEFIRSGLSGNPIALGIGIRAGLTPLDLQRGATPDNLIQVL 790

Query: 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDG 354
           R L           G             I      L     E               R  
Sbjct: 791 RRLSIETGLVSQFTGGRFTAQAENFLIPIMQQVLGLTNISPEVFRTLIASAITGDITRAR 850

Query: 355 GSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN 414
             V  +    +       ++     D  N +F          +  ++   +N        
Sbjct: 851 RIVETELGKGMPTTKTPDEVFARQLDVLNSSFQLLIDTFKENSQAVVSLNKNITTLAAIT 910


>gi|254508426|ref|ZP_05120546.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          16]
 gi|219548636|gb|EED25641.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          16]
          Length = 138

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51



 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|242013017|ref|XP_002427218.1| chitinase, putative [Pediculus humanus corporis]
 gi|212511518|gb|EEB14480.1| chitinase, putative [Pediculus humanus corporis]
          Length = 2606

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/396 (8%), Positives = 99/396 (25%), Gaps = 8/396 (2%)

Query: 15   NNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
            N+  QQ  S   N  N  N  Y  + +            +Q+            +  +  
Sbjct: 1032 NSHQQQLGSFNSNNANGQNFGYGNQGSNFHAVYSQ---QSQKQSINAFGSNPSVSGLNGG 1088

Query: 75   GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL-ESYSKNLSEDILGKTVIDNAEE 133
               ++L +  +   ++++      S     +     +  + S     +   +   +    
Sbjct: 1089 SNSQILNNLNS-GHLLNSHVLSTGSLGQQTNSFNGPIGSTASVYNGGNAYKQPTSNFGPN 1147

Query: 134  VVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQ 193
            V   +      V   +          +   +  L            ++      ++    
Sbjct: 1148 VKSAYEQHTAYVFVPQNTNTFSGNNAVHQPKSNLFGNQHGVTTPASQSQILSYGYNNNLS 1207

Query: 194  RDVLLQKISEIIGISTIVRN-NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
                     + + I+T  +N N+        G +L          +  +      E +  
Sbjct: 1208 PAGATNSFGKHLNINTENQNLNSHTSYNNIQGQSLNSLGFGQSVTDTGSQTGSAYEQHSG 1267

Query: 253  FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            +ID      + G      +              ++     M +  + ++ +K  +  N  
Sbjct: 1268 YIDSGRSQVSYGFNKNNVQDYQSNSFGFGPQTAYEQHTGYMNQNEVNTYKQKYNVGENQN 1327

Query: 313  NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
               G  +   + +  +      +           + +F     S     +    ++    
Sbjct: 1328 KYSGFNVVPSLTNNSSLFSTNNNLKENFKAAISGDFTFTTPSASFVSPSVTPAYDIQSIN 1387

Query: 373  DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             +  +  +  ++  +       +    +     N  
Sbjct: 1388 KV--NGANVVSQQSLLSGNKIQSYQAGINGAFNNGN 1421


>gi|302874586|ref|YP_003843219.1| flagellar basal-body rod protein FlgB [Clostridium cellulovorans
          743B]
 gi|307690803|ref|ZP_07633249.1| flagellar basal body rod protein FlgB [Clostridium cellulovorans
          743B]
 gi|302577443|gb|ADL51455.1| flagellar basal-body rod protein FlgB [Clostridium cellulovorans
          743B]
          Length = 129

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           +  NI N + K + R+      
Sbjct: 25 VVANNIANINTKGFKRQYVSFEE 47


>gi|190574262|ref|YP_001972107.1| flagellar basal body rod protein FlgF [Stenotrophomonas maltophilia
           K279a]
 gi|190012184|emb|CAQ45807.1| putative flagellar basal-body rod protein [Stenotrophomonas
           maltophilia K279a]
          Length = 249

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 29/121 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q   ++  N+ N+D   +      T   P        R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAFPIKGPGFASRVDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    S     + L         ++      +      + L  +        S   
Sbjct: 61  DAGFNRTPGSQHITGKPLDLSLQTGTWLAVQSSDGSEAYTRGAALSVTPNGQLVTSSGRP 120

Query: 123 L 123
           +
Sbjct: 121 V 121


>gi|77359723|ref|YP_339298.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874634|emb|CAI85855.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 247

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 19/44 (43%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQT 474
            +         VN   E+  +I  ++ + +  KL+   +++ Q+
Sbjct: 196 QVISGALEMSNVNPVHEMVDMISHQRQFELQVKLMKTAEEIDQS 239



 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/126 (8%), Positives = 29/126 (23%), Gaps = 12/126 (9%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENKN 61
             A +    +    A    N+ NA+   +       R          +     +     N
Sbjct: 6   YIAASGAKQSLMGLALKANNLANANTTGFKADFAQARSMQAFGEGLPSRVFSMEERPGSN 65

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           M    +      +       ++ ++++         N     +  L  + E         
Sbjct: 66  MTSGGIQQTGRELDIAMSDNAWLSVQDA------SGNEAYTKVGTLNITAEGMLVTSGGR 119

Query: 122 ILGKTV 127
            +    
Sbjct: 120 QVIGEG 125


>gi|152975155|ref|YP_001374672.1| flagellar basal body rod protein FlgB [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152023907|gb|ABS21677.1| flagellar basal-body rod protein FlgB [Bacillus cytotoxicus NVH
          391-98]
          Length = 135

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           +I  NI NA+   Y  +D   + 
Sbjct: 20 NTISNNISNANTPGYKAQDVTFSE 43


>gi|88858145|ref|ZP_01132787.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Pseudoalteromonas tunicata D2]
 gi|88819762|gb|EAR29575.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Pseudoalteromonas tunicata D2]
          Length = 140

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  VF+ +    +  S +  +   N+ NA+
Sbjct: 1  MSLFNVFDISATGMSAQSVRLNTTASNMSNAN 32



 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
             VN+ EE++ +I   ++Y  + +L      ML   +
Sbjct: 99  SNVNVVEEMANMISASRAYQTNVQLADAAKSMLSKTI 135


>gi|332994165|gb|AEF04220.1| flagellar basal-body rod protein FlgB [Alteromonas sp. SN2]
          Length = 143

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          Q+     + +   I  N+ NA+   Y  +D    
Sbjct: 13 QSALAIRTDRMEVISGNLANANTPGYKAKDIDFN 46


>gi|332187895|ref|ZP_08389628.1| flagellar basal-body rod protein FlgB [Sphingomonas sp. S17]
 gi|332012056|gb|EGI54128.1| flagellar basal-body rod protein FlgB [Sphingomonas sp. S17]
          Length = 115

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 1/114 (0%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M+   +F           Q+   +  NI NA    +  RD     +   V    Q     
Sbjct: 1   MAAETLFGIHGAALEVRGQRMGVLASNIANASTPGFKARDIDFKAALAAVEGGQQDQGIA 60

Query: 61  NMFDKVLHAHSSAIGQQ-RLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +   +S  G    L +   A  E         +     IS +  +L+ 
Sbjct: 61  KAMKYRVPLETSLDGNTVELAEEQTAFAENAVQYQTTLSFLNGRISTITRALKG 114


>gi|312882661|ref|ZP_07742398.1| flagellar basal body rod protein FlgC [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309369622|gb|EFP97137.1| flagellar basal body rod protein FlgC [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 138

 Score = 39.6 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|330447904|ref|ZP_08311552.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492095|dbj|GAA06049.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 243

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 6/127 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + +    A +  +   +       N+ NAD   +      V+   +     +  T+V   
Sbjct: 1   MDSFLYTATSGASRVMKAQHVRSNNLSNADTAGFRADMERVQSIPLQGAGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S         +     A+        F  ++ ++  + +          +    +  +  
Sbjct: 61  SAATRFDAGDVIKTGRALDIAINGDGFFTVQTIVGNEAYTRAGNIRVDEEGMMRVNGFPL 120

Query: 117 NLSEDIL 123
               + L
Sbjct: 121 MSEGEAL 127


>gi|322691908|ref|YP_004221478.1| endo-1,4-beta-xylanase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456764|dbj|BAJ67386.1| putative endo-1,4-beta-xylanase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 850

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/336 (8%), Positives = 84/336 (25%), Gaps = 2/336 (0%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
              KN S          +A   + +        Q +  +      L+ ++  R      +
Sbjct: 485 EILKNPSTYFGVGGNNHHAMVQLGDQWYMTYHAQTVAKELMNGGNLDAAHGYRNTHLDPI 544

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             +                  +++   +   I   +    +        + G  + +   
Sbjct: 545 TVNEDGSIADIAMTYEGLSSVKNLDAYQDGGIPASTIAWDSGIQNAYDLTSGVRVVDMTT 604

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +   +K+++      ++   +D     ++  +    GK   +L+IR             
Sbjct: 605 DNSEGQKLSNINNGEWTSLANVDFGNNGASSLTVTAAGKAGGILEIRLDDPDSEPVASIS 664

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ-GISETICVNPQYRSNPSFL 351
           +       +++          V  +  +       N   +     T          PS  
Sbjct: 665 IPAGDGSEYADYTTTLEGVTGVHHVVFSFKSDGGANAQDELYDITTYTFTESQDETPSTP 724

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLLEYARNSIGW 410
            D   +      N    A      +    +         +   +     + +        
Sbjct: 725 VDKSDLQSAVNENSSLNASDYTEESWKVFADALQKAQAVLQDESATEQQVQDALAALNSA 784

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +         +    ++ S++  +T GV+L +
Sbjct: 785 RAGLKLADDSTDGNADGSNDNASDAVDDTDGVDLAQ 820


>gi|148544839|ref|YP_001272209.1| membrane protein-like protein [Lactobacillus reuteri DSM 20016]
 gi|184154179|ref|YP_001842520.1| hypothetical protein LAR_1524 [Lactobacillus reuteri JCM 1112]
 gi|227363978|ref|ZP_03848078.1| phage infection protein [Lactobacillus reuteri MM2-3]
 gi|325683183|ref|ZP_08162699.1| YhgE/Pip domain protein [Lactobacillus reuteri MM4-1A]
 gi|148531873|gb|ABQ83872.1| membrane protein-like protein [Lactobacillus reuteri DSM 20016]
 gi|183225523|dbj|BAG26040.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070900|gb|EEI09223.1| phage infection protein [Lactobacillus reuteri MM2-3]
 gi|324977533|gb|EGC14484.1| YhgE/Pip domain protein [Lactobacillus reuteri MM4-1A]
          Length = 955

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/437 (8%), Positives = 109/437 (24%), Gaps = 19/437 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           M+     N   +  N       ++   + N+   N          S  N       +   
Sbjct: 282 MANSGALNSGASQLNA---GLNTL---MANSGTLN---SGANQLSSGLNTLSGNSENLRN 332

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 L + ++ +      Q        +        +    + +L+  L +    L+ 
Sbjct: 333 G--SGQLASGANQLNSTVNSQLGNINFNGIMGAMDQAQNLQQGLGQLQTGLTTAKNALAG 390

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRAD---ADKEIELEISNLRRFLSELTVVNDAI 177
                  +  A   +    ++  +++ +  +        +  +S+ +            +
Sbjct: 391 VQSSAASLQQASGALSGAASAGDQLKGVATNDGQIAGLAQQILSDDKASEQSKQAAQQIV 450

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
           +   A+             L      + G+   +   + M     +          +   
Sbjct: 451 QKADANVAAIQGLSGTLGQLSNLQGSLSGMQQQLGQLSQMSAVLDNAD--GTIRQANALL 508

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
             +N Y  T  + P  +D +  +++Q S+        + Q  + V           + + 
Sbjct: 509 ATLNGYKGTLAAMPGAVDQLKQATSQISSGASTLNSGVNQYTNGVDSAAAGAGTLNSGIG 568

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +       AG ++   G+                ++  I            L +G + 
Sbjct: 569 QYTAGVAQAGAGANQLASGIGQYTAGVAQAGAGAGQLASGIGQYTAGVG---QLGNGIAQ 625

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
                  + + A          +      +            L + +   I  + +  + 
Sbjct: 626 LNANSGALNSGAAQLAGALGQLNGQVPALVAGVNQLAAGTQQLQDNSPALISGIARLNAG 685

Query: 418 SHDLHMKSQVVFNHISE 434
           +  L          I+ 
Sbjct: 686 ASQLATSLAGGAKQING 702


>gi|332088752|gb|EGI93864.1| flagellar basal-body rod protein FlgC [Shigella boydii 5216-82]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|317509510|ref|ZP_07967120.1| MaoC domain-containing protein [Segniliparus rugosus ATCC BAA-974]
 gi|316252194|gb|EFV11654.1| MaoC domain-containing protein [Segniliparus rugosus ATCC BAA-974]
          Length = 906

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 49/192 (25%), Gaps = 6/192 (3%)

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            G  +A L      V            VL  + +++              + + +K +  
Sbjct: 637 DGAAEADLPSLKGTVVKLARTYKPFGPVLADAVNDQLRKVLGPTGKRSSHVIERVKSVWE 696

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                    +          S +R           +   +    D       + N   + 
Sbjct: 697 LGQGWADHVLIAIALGTREGSSVRGEALGGLGVPGSAAEVDALVDAAVAQVGAANGVAVA 756

Query: 389 DPVAGINTNVT-----LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
            P  G +   T     L E   +  G      + +  +           +      +G +
Sbjct: 757 LPSKGGSGGGTVDVAALAELTEHITGPDGVLAATARFVL-NQLGHTAEPAAQAETVLGSS 815

Query: 444 LQEELSFLIKVE 455
           L +EL+ L+  E
Sbjct: 816 LDQELADLVSAE 827


>gi|307310148|ref|ZP_07589798.1| flagellar basal-body rod protein FlgC [Escherichia coli W]
 gi|306909866|gb|EFN40360.1| flagellar basal-body rod protein FlgC [Escherichia coli W]
 gi|315060352|gb|ADT74679.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli W]
 gi|320200970|gb|EFW75554.1| Flagellar basal-body rod protein FlgC [Escherichia coli EC4100B]
 gi|323379087|gb|ADX51355.1| flagellar basal-body rod protein FlgC [Escherichia coli KO11]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +  ++        
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 55 QRSENKNMFDKV 66
                 +  + 
Sbjct: 61 GVKVADVIESQS 72


>gi|59712483|ref|YP_205259.1| flagellar basal body rod protein FlgC [Vibrio fischeri ES114]
 gi|197336337|ref|YP_002156702.1| flagellar basal-body rod protein FlgC [Vibrio fischeri MJ11]
 gi|24459275|gb|AAL86628.1| FlgC [Vibrio fischeri ES114]
 gi|59480584|gb|AAW86371.1| flagellar proximal rod protein FlgC [Vibrio fischeri ES114]
 gi|197317827|gb|ACH67274.1| flagellar basal-body rod protein FlgC [Vibrio fischeri MJ11]
          Length = 138

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +MLQ+ L  
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLQSTLRM 136



 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+      + Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNMANADSVSSSAAETYKARQAVFGA 51


>gi|82777311|ref|YP_403660.1| flagellar basal body rod protein FlgC [Shigella dysenteriae
          Sd197]
 gi|309788141|ref|ZP_07682747.1| flagellar basal-body rod protein FlgC [Shigella dysenteriae 1617]
 gi|81241459|gb|ABB62169.1| cell-proximal portion of basal-body rod [Shigella dysenteriae
          Sd197]
 gi|308923993|gb|EFP69494.1| flagellar basal-body rod protein FlgC [Shigella dysenteriae 1617]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +  ++        
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNSAPGAATG 60

Query: 55 QRSENKNMFDK 65
                 +  +
Sbjct: 61 GVKVADIIESQ 71


>gi|238919257|ref|YP_002932772.1| flagellar basal-body rod protein FlgC, [Edwardsiella ictaluri
          93-146]
 gi|238868826|gb|ACR68537.1| flagellar basal-body rod protein FlgC, putative [Edwardsiella
          ictaluri 93-146]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENVTVVT 54
          M+LL++F+ + +     S++      N+ NA          Y  +  +  ++P     + 
Sbjct: 1  MALLSIFDISGSALTAQSERMNVAASNMANADSVTGPDGQPYHAKQVVFQVNPAAGEEIG 60

Query: 55 QRSENKNMFD 64
              ++ + D
Sbjct: 61 GVRVSQIVED 70


>gi|254473329|ref|ZP_05086726.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062]
 gi|211957445|gb|EEA92648.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062]
          Length = 139

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 7/50 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTI 45
          L+A    + +     SQ+   +  N+ N  +         Y R+      
Sbjct: 5  LVASLKISSSGLRVQSQRMRIVSENLANVQSTGDTPGANPYQRKTITFKS 54


>gi|315453646|ref|YP_004073916.1| putative flagellar basal-body rod protein [Helicobacter felis
          ATCC 49179]
 gi|315132698|emb|CBY83326.1| putative flagellar basal-body rod protein [Helicobacter felis
          ATCC 49179]
          Length = 271

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   +  A         +   I  N+ N +   + R D +   
Sbjct: 1  MTNGYYDATGGMVTEFNRLDQISNNLANLNTNGFKRDDVVVGD 43


>gi|251797448|ref|YP_003012179.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. JDR-2]
 gi|247545074|gb|ACT02093.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. JDR-2]
          Length = 132

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              +  +   +  NI N D  N+ R + +    
Sbjct: 12 ALKASELRQGVVANNIANVDTPNFKRSEVLFEEL 45


>gi|241761153|ref|ZP_04759242.1| flagellar basal-body rod protein FlgC [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374772|gb|EER64233.1| flagellar basal-body rod protein FlgC [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM-LQTL 475
           GV+  +E+  +I+  + Y  + +++     + L TL
Sbjct: 95  GVDTAQEMVEMIETARDYQNNVQVMQTAKSLTLDTL 130


>gi|193066370|ref|ZP_03047418.1| FliC [Escherichia coli E22]
 gi|194429949|ref|ZP_03062459.1| FliC [Escherichia coli B171]
 gi|260844327|ref|YP_003222105.1| flagellin [Escherichia coli O103:H2 str. 12009]
 gi|192925955|gb|EDV80601.1| FliC [Escherichia coli E22]
 gi|194412038|gb|EDX28350.1| FliC [Escherichia coli B171]
 gi|257759474|dbj|BAI30971.1| flagellin [Escherichia coli O103:H2 str. 12009]
 gi|323158593|gb|EFZ44607.1| fliC [Escherichia coli E128010]
          Length = 497

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/488 (9%), Positives = 134/488 (27%), Gaps = 23/488 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL +   +  +     S +  +  + I N             T + + +T  ++ + +  
Sbjct: 24  SLSSAIERLSSGLRINSAKDDAAGQAIAN-----------RFTANIKGLTQASRNANDGI 72

Query: 62  MFDKVLHAH-SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      +      + ++         +  D    S    I +    ++  S     
Sbjct: 73  SVAQTTEGALNEINNNLQRIRELSVQATNGTNSDSDLTSIQSEIQQRLSEIDRVSGQTQF 132

Query: 121 DILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           + +     D    +     +  T   ++Q+I +D        I +  +  +         
Sbjct: 133 NGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTKLKAATAETTYFG 192

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +  D      V           + +   N  + V  +      E    ++  
Sbjct: 193 STVKLADANTLDADITATVKGTTTPGQRDGNIMSDANGKLYVKVAGSDKPAENGYYEVTV 252

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E   +     +     + G    +     V   K K  + ++        +        L
Sbjct: 253 EDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTATASITGAKLFKL 312

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +  +         +    + A+  +       + +S T     ++ +    L      
Sbjct: 313 EDANGKDTGSFALIGDDGKQYAANVDQKTGAVSVKTMSYTDADGVKHDNVKVELGGSDGK 372

Query: 358 SKKFLWNVKNLAGYPDLI-----NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           ++             DL           + +     DP+A I+  ++ ++   +    L 
Sbjct: 373 TEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQVD---SLRSNLG 429

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             ++             N++S + S     +   E+S + + +        ++   ++  
Sbjct: 430 AIQNRFDSAITNLGNTVNNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQTT 489

Query: 473 QTLLEGVK 480
           Q +L  ++
Sbjct: 490 QNVLSLLR 497


>gi|315125985|ref|YP_004067988.1| FlgFL [Pseudoalteromonas sp. SM9913]
 gi|315014499|gb|ADT67837.1| FlgFL [Pseudoalteromonas sp. SM9913]
          Length = 243

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/112 (8%), Positives = 20/112 (17%), Gaps = 2/112 (1%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
           +   A +     +        N+ N     +   D     S        +   +  +   
Sbjct: 4   LIYTAVSGAELNNTALRVAANNLANVSTVGFK-ADLEQAQSMMVQGEGFRTRYHAQLTPV 62

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP-THYISKLRDSLESYSK 116
                S  I                      N  P       L    + +  
Sbjct: 63  TTDLSSGPIMDTGRNLDIALSNGGYLEVMDDNGEPAYTRAGNLVVDADGFVT 114


>gi|255322352|ref|ZP_05363498.1| bacterial flagellin domain protein [Campylobacter showae RM3277]
 gi|255300725|gb|EET79996.1| bacterial flagellin domain protein [Campylobacter showae RM3277]
          Length = 748

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/475 (9%), Positives = 123/475 (25%), Gaps = 39/475 (8%)

Query: 32  DNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS 91
           +      +    TI+ +    V   S+   + D  + A +  +     L    A      
Sbjct: 286 NTP--TNKVVEVTINNQGQINVKDLSKGNQVIDFHMIAATKKVANADALAGGIAGASSAF 343

Query: 92  ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
                  S  + +  +  +      N  +  + + V    E++      +    +     
Sbjct: 344 DTVDSLTSGANPLEAMVQA------NPDDYEITEFVKSKYEDLDGATTNAYDYDKINFKQ 397

Query: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             + +   +S + R   +    N  +     SK       D+ D+  Q +   + I +  
Sbjct: 398 EGRNLIGTVSQVERGSGKFADDNTTLSQVVGSKELYPGERDKYDMNDQAL--KMQIKSKS 455

Query: 212 RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
             +  + V          +    ++  + +  T T+E    F +             + K
Sbjct: 456 GGDYKVDVIFGSAVPPATSGNAQVSITRPDGTTYTTEVWDSFYNDTTNPPTTEGRETQSK 515

Query: 272 IKALLQIRDSVVPIFQNQLDEMARVLIG-----------------SFSEKDPIAGNSENV 314
                Q+ D +  +  + +   A                        +          + 
Sbjct: 516 NMTFRQLNDIIGMVASDNVPAGAGGSAQADYVAYKQAIAKSQGSVEANMDHRGRIKVTDK 575

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                   +   D                  +         S +     +  ++  + DL
Sbjct: 576 QNAVTPIKVGIYDEVNSDQFYGDSTGTTPATTQGDGSLWNFSANNGIEIDSPSVDIFDDL 635

Query: 375 INHYCDSFNKNFIFDPVAGINTNVTLL----------EYARNSIGWLEKNRSDSHDLHMK 424
                   +  +  D  +    N  +           ++       +    +     +  
Sbjct: 636 DRMIEAVRSGQYRADSESEHPRNSGIQGAIERLDHIADHVNKIHTKVGNQTNTLIQTNTH 695

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           + V+  ++    ++    +  E    L++   SY    + +   +++  +LL  +
Sbjct: 696 ASVMEVNVKTVKADITNADYGETYMNLMQKMMSYQAMLQSVAKINQL--SLLNYM 748


>gi|126653433|ref|ZP_01725529.1| flagellar basal-body rod protein [Bacillus sp. B14905]
 gi|126589789|gb|EAZ83922.1| flagellar basal-body rod protein [Bacillus sp. B14905]
          Length = 67

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 4/35 (11%), Positives = 11/35 (31%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +   F           ++   +  N+ NA+   + 
Sbjct: 1  MFKGFYTVATGMITQQRRTELLSNNLANANTPGFK 35


>gi|186470530|ref|YP_001861848.1| filamentous haemagglutinin outer membrane protein [Burkholderia
           phymatum STM815]
 gi|184196839|gb|ACC74802.1| filamentous haemagglutinin family outer membrane protein
           [Burkholderia phymatum STM815]
          Length = 2782

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/422 (6%), Positives = 82/422 (19%), Gaps = 10/422 (2%)

Query: 12  NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS 71
           +    A Q  +    ++ +                                        +
Sbjct: 368 SGTLAAQQNMSVTAGSVASTGTLG-----AGVNSDGTIANSGELSVAATGAVAATGRNAA 422

Query: 72  SA----IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTV 127
                  G    L                N +     +         +            
Sbjct: 423 GDSANISGASLNLAGSSTSANGALTLTASNGNLNLAGATTTARTTLNASTTGTLTTDNGA 482

Query: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
           + +           +    ++ + A +   +  +   +  +       +++  +A     
Sbjct: 483 LSSGGAQAITAGALSNNSGQMVSGATQTATVTGAVSNQSGTMQANGALSLQAGSADNTGG 542

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF-ETVPRDINFEKMNSYTVT 246
           H      D L   +S ++          +  V    G      ++    N       T+ 
Sbjct: 543 HIASLNADGLNLTVSGLLKNGAGGSIGGNGNVTIRAGQVANAGSITAVQNLIASAVQTLF 602

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           S           +S+            A      +      +      ++ + +    + 
Sbjct: 603 SSGTLAANGNATLSAGTSLTNSGSITAASAASITASTFDNSSGTTGANQITLNATDLLNH 662

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
               ++        +     DN     +                       +      + 
Sbjct: 663 AGTITQYGSSAMGFNVSGTFDNSSGGTLQTNSTDLTLAPGALDNDGGKILHAGTGTLTIA 722

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
              G   L N      +   I      +N    +L    N    +  + +++        
Sbjct: 723 PGNGAGALSNAGGQIISAGQIAARAGSLNNTGGVLAAQSNIAATVSGDVNNAQGAVRSLS 782

Query: 427 VV 428
            +
Sbjct: 783 SL 784


>gi|153001475|ref|YP_001367156.1| flagellar basal body rod protein FlgB [Shewanella baltica OS185]
 gi|160876206|ref|YP_001555522.1| flagellar basal body rod protein FlgB [Shewanella baltica OS195]
 gi|217972595|ref|YP_002357346.1| flagellar basal body rod protein FlgB [Shewanella baltica OS223]
 gi|304409981|ref|ZP_07391600.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS183]
 gi|307302306|ref|ZP_07582064.1| flagellar basal-body rod protein FlgB [Shewanella baltica BA175]
 gi|151366093|gb|ABS09093.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS185]
 gi|160861728|gb|ABX50262.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS195]
 gi|217497730|gb|ACK45923.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS223]
 gi|304351390|gb|EFM15789.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS183]
 gi|306914344|gb|EFN44765.1| flagellar basal-body rod protein FlgB [Shewanella baltica BA175]
 gi|315268396|gb|ADT95249.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS678]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
                     I  NI NAD  +Y  RD   +
Sbjct: 17 GIRAQRA--EVISSNIANADTPHYKARDVDFS 46


>gi|311068140|ref|YP_003973063.1| flagellar basal body rod protein FlgC [Bacillus atrophaeus 1942]
 gi|310868657|gb|ADP32132.1| flagellar basal body rod protein FlgC [Bacillus atrophaeus 1942]
          Length = 149

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 10/57 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------N----YVRRDTMTTISP 47
          M+     N + +       +   +  N+ N D             Y R+      + 
Sbjct: 1  MTAFQSLNVSGSALTAQRVRMDVVSSNLANMDTTRAKQVDGEWVPYRRKLVSLQSNG 57


>gi|163758012|ref|ZP_02165100.1| flagellar basal-body rod protein B [Hoeflea phototrophica DFL-43]
 gi|162284301|gb|EDQ34584.1| flagellar basal-body rod protein B [Hoeflea phototrophica DFL-43]
          Length = 125

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 1/26 (3%)

Query: 22 ASIVRNIENADNKNYV-RRDTMTTIS 46
          + +  NI N +   Y  R        
Sbjct: 22 SVVAGNIANVNTPGYTAREVAAFEAV 47


>gi|307638243|gb|ADN80693.1| Flagellar basal-body rod protein [Helicobacter pylori 908]
 gi|325996836|gb|ADZ52241.1| Flagellar basal-body rod protein [Helicobacter pylori 2018]
 gi|325998428|gb|ADZ50636.1| Flagellar basal-body rod protein [Helicobacter pylori 2017]
          Length = 161

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +   I  NI NA+     +   Y R++ + 
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVF 48


>gi|220913734|ref|YP_002489043.1| flagellar basal-body rod protein FlgC [Arthrobacter
           chlorophenolicus A6]
 gi|219860612|gb|ACL40954.1| flagellar basal-body rod protein FlgC [Arthrobacter
           chlorophenolicus A6]
          Length = 130

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 14/23 (60%)

Query: 443 NLQEELSFLIKVEQSYNISNKLI 465
           +L E++  LI  ++ Y  + +++
Sbjct: 92  DLAEQMGALIVAQRGYQANAQVV 114


>gi|16799794|ref|NP_470062.1| flagellar basal body rod protein FlgC [Listeria innocua Clip11262]
 gi|16802753|ref|NP_464238.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           EGD-e]
 gi|46906962|ref|YP_013351.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091674|ref|ZP_00229470.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes str.
           4b H7858]
 gi|47095277|ref|ZP_00232888.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes str.
           1/2a F6854]
 gi|217965191|ref|YP_002350869.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           HCC23]
 gi|224498793|ref|ZP_03667142.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           Finland 1988]
 gi|224501984|ref|ZP_03670291.1| flagellar basal body rod protein FlgC [Listeria monocytogenes FSL
           R2-561]
 gi|226223342|ref|YP_002757449.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           Clip81459]
 gi|254824009|ref|ZP_05229010.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           J1-194]
 gi|254829368|ref|ZP_05234055.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           N3-165]
 gi|254830298|ref|ZP_05234953.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           10403S]
 gi|254900053|ref|ZP_05259977.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           J0161]
 gi|254911394|ref|ZP_05261406.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           J2818]
 gi|254932009|ref|ZP_05265368.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           HPB2262]
 gi|254935721|ref|ZP_05267418.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           F6900]
 gi|255022492|ref|ZP_05294478.1| flagellar basal body rod protein FlgC [Listeria monocytogenes FSL
           J1-208]
 gi|255025679|ref|ZP_05297665.1| flagellar basal body rod protein FlgC [Listeria monocytogenes FSL
           J2-003]
 gi|284801041|ref|YP_003412906.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           08-5578]
 gi|284994183|ref|YP_003415951.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           08-5923]
 gi|290894009|ref|ZP_06556984.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           J2-071]
 gi|16410100|emb|CAC98789.1| lmo0711 [Listeria monocytogenes EGD-e]
 gi|16413171|emb|CAC95951.1| lin0719 [Listeria innocua Clip11262]
 gi|46880228|gb|AAT03528.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47016348|gb|EAL07270.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes str.
           1/2a F6854]
 gi|47019993|gb|EAL10730.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes str.
           4b H7858]
 gi|217334461|gb|ACK40255.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           HCC23]
 gi|225875804|emb|CAS04507.1| Putative flagellar basal-body rod protein FlgC [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258601782|gb|EEW15107.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           N3-165]
 gi|258608305|gb|EEW20913.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           F6900]
 gi|284056603|gb|ADB67544.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           08-5578]
 gi|284059650|gb|ADB70589.1| flagellar basal body rod protein FlgC [Listeria monocytogenes
           08-5923]
 gi|290556455|gb|EFD89994.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           J2-071]
 gi|293583560|gb|EFF95592.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           HPB2262]
 gi|293589332|gb|EFF97666.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes
           J2818]
 gi|293593236|gb|EFG00997.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           J1-194]
 gi|307570250|emb|CAR83429.1| flagellar basal-body rod protein [Listeria monocytogenes L99]
 gi|313610106|gb|EFR85431.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           F2-208]
 gi|328467276|gb|EGF38356.1| flagellar basal body rod protein FlgC [Listeria monocytogenes 1816]
 gi|328475672|gb|EGF46421.1| flagellar basal body rod protein FlgC [Listeria monocytogenes 220]
 gi|332311135|gb|EGJ24230.1| Flagellar basal-body rod protein FlgC [Listeria monocytogenes str.
           Scott A]
          Length = 136

 Score = 39.6 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 122

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 123 NEKMME 128



 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTMTTI 45
          +    N + +  N A Q       NI NAD+        ++R+  + + 
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSE 49


>gi|238764393|ref|ZP_04625343.1| Flagellar basal-body rod protein flgF [Yersinia kristensenii ATCC
           33638]
 gi|238697419|gb|EEP90186.1| Flagellar basal-body rod protein flgF [Yersinia kristensenii ATCC
           33638]
          Length = 251

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSMATRTMVTASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ S +         ++G    
Sbjct: 67  SQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQISADGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +          +   +  + A        ++  +
Sbjct: 127 IDVPPQAAITIAADGTISALNAGDSPNTIAQLGQI 161


>gi|206890290|ref|YP_002248113.1| flagellar basal-body rod protein FlgC [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206742228|gb|ACI21285.1| flagellar basal-body rod protein FlgC [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 135

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 11/64 (17%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTI-----SPENVT 51
          +      +         +   I  N+ N ++    +   Y R+D + T        + V 
Sbjct: 4  IFLPLKVSATGLEAQKIRLNVIASNLANINSTKTPEGGPYRRKDVLFTTYMYDQISQGVD 63

Query: 52 VVTQ 55
          V   
Sbjct: 64 VQRI 67



 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN  EE+  LI   ++Y  +  +I     M    L+ +K
Sbjct: 95  NVNPMEEMINLISASRAYEANLTMINSYKDMFMRTLDLLK 134


>gi|238788316|ref|ZP_04632110.1| Flagellar basal-body rod protein flgF [Yersinia frederiksenii ATCC
           33641]
 gi|238723562|gb|EEQ15208.1| Flagellar basal-body rod protein flgF [Yersinia frederiksenii ATCC
           33641]
          Length = 251

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 33/155 (21%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSMATRTLVTASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++             ++G    
Sbjct: 67  SQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVGANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|28900123|ref|NP_799778.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837106|ref|ZP_01989773.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ3810]
 gi|260365773|ref|ZP_05778269.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           K5030]
 gi|260880695|ref|ZP_05893050.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AN-5034]
 gi|260897699|ref|ZP_05906195.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           Peru-466]
 gi|260899390|ref|ZP_05907785.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ4037]
 gi|28808406|dbj|BAC61611.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149749694|gb|EDM60439.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ3810]
 gi|308086220|gb|EFO35915.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           Peru-466]
 gi|308092603|gb|EFO42298.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AN-5034]
 gi|308109250|gb|EFO46790.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           AQ4037]
 gi|308115048|gb|EFO52588.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus
           K5030]
          Length = 243

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 20/124 (16%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      VR   +     +  T+
Sbjct: 1   MDSLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERVRSVELQGPGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S +       +     A+    + + + A++          N        ++    
Sbjct: 57  VVTNSASTRFDSGDVVKTGRALDVAVMGEGYLAVE------TPAGNEAYTRAGNIQIDTF 110

Query: 113 SYSK 116
               
Sbjct: 111 GAMS 114


>gi|296102910|ref|YP_003613056.1| flagellar basal body rod protein FlgC [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295057369|gb|ADF62107.1| flagellar basal body rod protein FlgC [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVSDV 67


>gi|256020226|ref|ZP_05434091.1| flagellar basal body rod protein FlgC [Shigella sp. D9]
 gi|300817272|ref|ZP_07097490.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 107-1]
 gi|307313521|ref|ZP_07593142.1| flagellar basal-body rod protein FlgC [Escherichia coli W]
 gi|332281388|ref|ZP_08393801.1| flagellar basal body rod protein FlgC [Shigella sp. D9]
 gi|300530248|gb|EFK51310.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 107-1]
 gi|306906689|gb|EFN37200.1| flagellar basal-body rod protein FlgC [Escherichia coli W]
 gi|315059540|gb|ADT73867.1| flagellar component of cell-proximal portion of basal-body rod
           [Escherichia coli W]
 gi|323379901|gb|ADX52169.1| flagellar basal-body rod protein FlgC [Escherichia coli KO11]
 gi|332103740|gb|EGJ07086.1| flagellar basal body rod protein FlgC [Shigella sp. D9]
          Length = 143

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANANAPASSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDSASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|157146228|ref|YP_001453547.1| flagellar basal body rod protein FlgC [Citrobacter koseri ATCC
          BAA-895]
 gi|157083433|gb|ABV13111.1| hypothetical protein CKO_01985 [Citrobacter koseri ATCC BAA-895]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|254251189|ref|ZP_04944507.1| flagella basal body rod protein [Burkholderia dolosa AUO158]
 gi|124893798|gb|EAY67678.1| flagella basal body rod protein [Burkholderia dolosa AUO158]
          Length = 141

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +    P   
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPMGG 57



 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 17/40 (42%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
              Y     V+  +E+  +I   +SY  + + +    +++
Sbjct: 94  ENGYVQMPNVDPVQEMVNMISASRSYQANVETLNTAKQLM 133


>gi|126175149|ref|YP_001051298.1| flagellar basal body rod protein FlgB [Shewanella baltica OS155]
 gi|125998354|gb|ABN62429.1| flagellar basal-body rod protein FlgB [Shewanella baltica OS155]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
                     I  NI NAD  +Y  RD   +
Sbjct: 17 GIRAQRA--EVISSNIANADTPHYKARDVDFS 46


>gi|170768138|ref|ZP_02902591.1| flagellar basal-body rod protein FlgC [Escherichia albertii
          TW07627]
 gi|170122904|gb|EDS91835.1| flagellar basal-body rod protein FlgC [Escherichia albertii
          TW07627]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|53717912|ref|YP_106898.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          K96243]
 gi|53724563|ref|YP_104796.1| flagellar basal body rod protein FlgC [Burkholderia mallei ATCC
          23344]
 gi|76809289|ref|YP_331878.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          1710b]
 gi|121599639|ref|YP_994289.1| flagellar basal body rod protein FlgC [Burkholderia mallei SAVP1]
 gi|124385719|ref|YP_001028062.1| flagellar basal body rod protein FlgC [Burkholderia mallei NCTC
          10229]
 gi|126439110|ref|YP_001057320.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          668]
 gi|126450357|ref|YP_001082869.1| flagellar basal body rod protein FlgC [Burkholderia mallei NCTC
          10247]
 gi|126454889|ref|YP_001064562.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          1106a]
 gi|134283634|ref|ZP_01770333.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          305]
 gi|167001534|ref|ZP_02267329.1| flagellar basal-body rod protein FlgC [Burkholderia mallei
          PRL-20]
 gi|167717658|ref|ZP_02400894.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          DM98]
 gi|167736701|ref|ZP_02409475.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          14]
 gi|167813799|ref|ZP_02445479.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          91]
 gi|167822316|ref|ZP_02453787.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          9]
 gi|167843906|ref|ZP_02469414.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          B7210]
 gi|167892408|ref|ZP_02479810.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          7894]
 gi|167900906|ref|ZP_02488111.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          NCTC 13177]
 gi|167909125|ref|ZP_02496216.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          112]
 gi|167917162|ref|ZP_02504253.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei
          BCC215]
 gi|217424916|ref|ZP_03456412.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          576]
 gi|226199800|ref|ZP_03795351.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          Pakistan 9]
 gi|237810459|ref|YP_002894910.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          MSHR346]
 gi|238562527|ref|ZP_00440313.2| flagellar basal-body rod protein FlgC [Burkholderia mallei GB8
          horse 4]
 gi|242316173|ref|ZP_04815189.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1106b]
 gi|254174790|ref|ZP_04881451.1| flagellar basal-body rod protein FlgC [Burkholderia mallei ATCC
          10399]
 gi|254182142|ref|ZP_04888739.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1655]
 gi|254188072|ref|ZP_04894584.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254197006|ref|ZP_04903430.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          S13]
 gi|254201894|ref|ZP_04908258.1| flagellar basal-body rod protein FlgC [Burkholderia mallei FMH]
 gi|254207228|ref|ZP_04913579.1| flagellar basal-body rod protein FlgC [Burkholderia mallei JHU]
 gi|254258642|ref|ZP_04949696.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1710a]
 gi|254295812|ref|ZP_04963269.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          406e]
 gi|254359730|ref|ZP_04976001.1| flagellar basal-body rod protein FlgC [Burkholderia mallei
          2002721280]
 gi|42766726|gb|AAS45446.1| putative flagellar biosynthesis protein [Burkholderia
          pseudomallei]
 gi|52208326|emb|CAH34259.1| flagellar basal-body rod protein [Burkholderia pseudomallei
          K96243]
 gi|52427986|gb|AAU48579.1| flagellar basal-body rod protein FlgC [Burkholderia mallei ATCC
          23344]
 gi|76578742|gb|ABA48217.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1710b]
 gi|121228449|gb|ABM50967.1| flagellar basal-body rod protein FlgC [Burkholderia mallei SAVP1]
 gi|124293739|gb|ABN03008.1| flagellar basal-body rod protein FlgC [Burkholderia mallei NCTC
          10229]
 gi|126218603|gb|ABN82109.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          668]
 gi|126228531|gb|ABN92071.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1106a]
 gi|126243227|gb|ABO06320.1| flagellar basal-body rod protein FlgC [Burkholderia mallei NCTC
          10247]
 gi|134245043|gb|EBA45138.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          305]
 gi|147747788|gb|EDK54864.1| flagellar basal-body rod protein FlgC [Burkholderia mallei FMH]
 gi|147752770|gb|EDK59836.1| flagellar basal-body rod protein FlgC [Burkholderia mallei JHU]
 gi|148028944|gb|EDK86876.1| flagellar basal-body rod protein FlgC [Burkholderia mallei
          2002721280]
 gi|157805705|gb|EDO82875.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          406e]
 gi|157935752|gb|EDO91422.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          Pasteur 52237]
 gi|160695835|gb|EDP85805.1| flagellar basal-body rod protein FlgC [Burkholderia mallei ATCC
          10399]
 gi|169653749|gb|EDS86442.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          S13]
 gi|184212680|gb|EDU09723.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1655]
 gi|217391936|gb|EEC31962.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          576]
 gi|225928151|gb|EEH24187.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          Pakistan 9]
 gi|237504017|gb|ACQ96335.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          MSHR346]
 gi|238522487|gb|EEP85931.1| flagellar basal-body rod protein FlgC [Burkholderia mallei GB8
          horse 4]
 gi|242139412|gb|EES25814.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1106b]
 gi|243062736|gb|EES44922.1| flagellar basal-body rod protein FlgC [Burkholderia mallei
          PRL-20]
 gi|254217331|gb|EET06715.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei
          1710a]
          Length = 141

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPEN 49
          SL+ +F+ A +  +  SQ+      N+ NAD+        Y  +  +   +P  
Sbjct: 3  SLMNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMG 56


>gi|311280019|ref|YP_003942250.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae SCF1]
 gi|308749214|gb|ADO48966.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae SCF1]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT-ISPENVTVV 53
          M+LL++F+ A +     S++      N+ NA          Y  +  +    +P      
Sbjct: 1  MALLSIFDVAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAPIGAATG 60

Query: 54 TQRSEN 59
            +  N
Sbjct: 61 GVKVAN 66


>gi|313634361|gb|EFS00958.1| flagellar basal-body rod protein FlgC [Listeria seeligeri FSL
           N1-067]
          Length = 138

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 26/66 (39%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +    +   +      N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGSVNVKRVYDPTHPNANEAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 124

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 125 NEKMME 130



 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 21/141 (14%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTM------TTISPENV 50
           +    N + +  N A Q       NI NAD+        ++R+  +         +    
Sbjct: 1   MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVMSEISPFETALTGT 60

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
             V             + + + ++  +R+              ++ N   T  ++ L   
Sbjct: 61  KGVKV---------SEISSDTGSVNVKRVYDPTHPNANEAGYVNYANVDMTAEMTNLMVG 111

Query: 111 LESYSKNLSEDILGKTVIDNA 131
            + Y+ N S     + +++  
Sbjct: 112 QKMYAANTSALQANEKMMEKD 132


>gi|84388089|ref|ZP_00990985.1| flagellar basal body rod protein [Vibrio splendidus 12B01]
 gi|84377156|gb|EAP94026.1| flagellar basal body rod protein [Vibrio splendidus 12B01]
          Length = 137

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+      + Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAEETYKARHAVFGA 51



 Score = 36.5 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   ++Y  + ++   + +ML   L+ 
Sbjct: 98  NVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 135


>gi|228958023|ref|ZP_04119759.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228801648|gb|EEM48529.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 166

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 51 NTVSSNIANANTPGYKAQDVTFAE 74


>gi|149184204|ref|ZP_01862522.1| flagellar proximal rod protein [Erythrobacter sp. SD-21]
 gi|148831524|gb|EDL49957.1| flagellar proximal rod protein [Erythrobacter sp. SD-21]
          Length = 115

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS   +F          SQ+   +  NI NA    Y  RD     +
Sbjct: 1  MS-EGLFGIHGAALEIRSQRLGVLGSNIANAATPGYKARDIDFAAA 45


>gi|126697840|ref|YP_001086737.1| flagellar basal body rod protein FlgG [Clostridium difficile 630]
 gi|115249277|emb|CAJ67090.1| Flagellar hook-basal body complex protein FlgG1 [Clostridium
           difficile]
          Length = 257

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 61/236 (25%), Gaps = 9/236 (3%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
             +     V +    +  +G         +  + K++      +                
Sbjct: 14  TNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTKQKQIIGDISPGIS 73

Query: 297 L---IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +   I +F++      +++    +         D    Q  +         + +   +  
Sbjct: 74  MDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNFRTDNQGD--LITS 131

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G            +         +  + +     D  A    N+       N     + 
Sbjct: 132 EGYYVLGTNTATGAVGHINVGNQKFEVAKDNTISLDGNAMYKFNIVDFNNYNNLKKEGDN 191

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
             S    + + + +           +  V++  E++ ++ + + Y  + K+I   D
Sbjct: 192 LYSGGGAMKVNNALTIQS----AIESSNVDMVSEINNMMTISREYEANQKIIQAMD 243



 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 30/150 (20%), Gaps = 27/150 (18%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQR 56
           ++     A +      Q+   +V N+ N D   Y  +  +T           N      +
Sbjct: 1   MIRGLYIAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTK 60

Query: 57  S---------------ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
                              N     +    + +      + F          D   N   
Sbjct: 61  QKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGF------FLVSDAAGNQFY 114

Query: 102 HYISKLRDSLESYSKNLSEDILGKTVIDNA 131
                 R   +          +  T     
Sbjct: 115 TRNGNFRTDNQGDLITSEGYYVLGTNTATG 144


>gi|15801191|ref|NP_287208.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7
          EDL933]
 gi|15830706|ref|NP_309479.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7
          str. Sakai]
 gi|16129037|ref|NP_415592.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli str. K-12 substr. MG1655]
 gi|26247214|ref|NP_753254.1| flagellar basal body rod protein FlgC [Escherichia coli CFT073]
 gi|74311636|ref|YP_310055.1| flagellar basal body rod protein FlgC [Shigella sonnei Ss046]
 gi|82544460|ref|YP_408407.1| flagellar basal body rod protein FlgC [Shigella boydii Sb227]
 gi|89107920|ref|AP_001700.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli str. K-12 substr. W3110]
 gi|91210226|ref|YP_540212.1| flagellar basal body rod protein FlgC [Escherichia coli UTI89]
 gi|110641250|ref|YP_668980.1| flagellar basal body rod protein FlgC [Escherichia coli 536]
 gi|117623260|ref|YP_852173.1| flagellar basal body rod protein FlgC [Escherichia coli APEC O1]
 gi|157158527|ref|YP_001462308.1| flagellar basal body rod protein FlgC [Escherichia coli E24377A]
 gi|157160601|ref|YP_001457919.1| flagellar basal body rod protein FlgC [Escherichia coli HS]
 gi|168747150|ref|ZP_02772172.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4113]
 gi|168758634|ref|ZP_02783641.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4401]
 gi|168764486|ref|ZP_02789493.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4501]
 gi|168767733|ref|ZP_02792740.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4486]
 gi|168773919|ref|ZP_02798926.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4196]
 gi|168783604|ref|ZP_02808611.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4076]
 gi|168790009|ref|ZP_02815016.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC869]
 gi|168802019|ref|ZP_02827026.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC508]
 gi|170020530|ref|YP_001725484.1| flagellar basal body rod protein FlgC [Escherichia coli ATCC
          8739]
 gi|170080725|ref|YP_001730045.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli str. K-12 substr. DH10B]
 gi|187733039|ref|YP_001880754.1| flagellar basal body rod protein FlgC [Shigella boydii CDC
          3083-94]
 gi|188493209|ref|ZP_03000479.1| flagellar basal-body rod protein FlgC [Escherichia coli 53638]
 gi|191168455|ref|ZP_03030243.1| flagellar basal-body rod protein FlgC [Escherichia coli B7A]
 gi|191172415|ref|ZP_03033956.1| flagellar basal-body rod protein FlgC [Escherichia coli F11]
 gi|193064524|ref|ZP_03045604.1| flagellar basal-body rod protein FlgC [Escherichia coli E22]
 gi|194428485|ref|ZP_03061025.1| flagellar basal-body rod protein FlgC [Escherichia coli B171]
 gi|194437997|ref|ZP_03070090.1| flagellar basal-body rod protein FlgC [Escherichia coli 101-1]
 gi|195935464|ref|ZP_03080846.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7
          str. EC4024]
 gi|208806183|ref|ZP_03248520.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4206]
 gi|208816163|ref|ZP_03257342.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4045]
 gi|208822529|ref|ZP_03262848.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4042]
 gi|209400948|ref|YP_002269920.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4115]
 gi|209918328|ref|YP_002292412.1| flagellar basal body rod protein FlgC [Escherichia coli SE11]
 gi|215486283|ref|YP_002328714.1| flagellar basal body rod protein FlgC [Escherichia coli O127:H6
          str. E2348/69]
 gi|217328457|ref|ZP_03444539.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. TW14588]
 gi|218553653|ref|YP_002386566.1| flagellar basal body rod protein FlgC [Escherichia coli IAI1]
 gi|218557956|ref|YP_002390869.1| flagellar basal body rod protein FlgC [Escherichia coli S88]
 gi|218689027|ref|YP_002397239.1| flagellar basal body rod protein FlgC [Escherichia coli ED1a]
 gi|218694608|ref|YP_002402275.1| flagellar basal body rod protein FlgC [Escherichia coli 55989]
 gi|218700423|ref|YP_002408052.1| flagellar basal body rod protein FlgC [Escherichia coli IAI39]
 gi|218704482|ref|YP_002412001.1| flagellar basal body rod protein FlgC [Escherichia coli UMN026]
 gi|227886568|ref|ZP_04004373.1| flagellar basal body rod protein FlgC [Escherichia coli 83972]
 gi|237706940|ref|ZP_04537421.1| flagellar rod protein FlgC [Escherichia sp. 3_2_53FAA]
 gi|238900328|ref|YP_002926124.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli BW2952]
 gi|253773902|ref|YP_003036733.1| flagellar basal body rod protein FlgC [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161180|ref|YP_003044288.1| flagellar basal body rod protein FlgC [Escherichia coli B str.
          REL606]
 gi|254792456|ref|YP_003077293.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7
          str. TW14359]
 gi|256018669|ref|ZP_05432534.1| flagellar basal body rod protein FlgC [Shigella sp. D9]
 gi|256023228|ref|ZP_05437093.1| flagellar basal body rod protein FlgC [Escherichia sp. 4_1_40B]
 gi|260843314|ref|YP_003221092.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O103:H2 str. 12009]
 gi|260854557|ref|YP_003228448.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O26:H11 str. 11368]
 gi|260867437|ref|YP_003233839.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O111:H- str. 11128]
 gi|261227021|ref|ZP_05941302.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256255|ref|ZP_05948788.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O157:H7 str. FRIK966]
 gi|291282094|ref|YP_003498912.1| Cell-proximal portion of basal-body rod [Escherichia coli O55:H7
          str. CB9615]
 gi|293404358|ref|ZP_06648352.1| flgC [Escherichia coli FVEC1412]
 gi|293414369|ref|ZP_06657018.1| flagellar basal-body rod protein FlgC [Escherichia coli B185]
 gi|293433364|ref|ZP_06661792.1| flagellar basal-body rod protein FlgC [Escherichia coli B088]
 gi|298380138|ref|ZP_06989743.1| flagellar basal-body rod protein FlgC [Escherichia coli FVEC1302]
 gi|300816776|ref|ZP_07096996.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 107-1]
 gi|300821145|ref|ZP_07101294.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 119-7]
 gi|300899593|ref|ZP_07117832.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 198-1]
 gi|300902465|ref|ZP_07120447.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 84-1]
 gi|300918676|ref|ZP_07135257.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 115-1]
 gi|300922600|ref|ZP_07138700.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 182-1]
 gi|300928374|ref|ZP_07143908.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 187-1]
 gi|300938639|ref|ZP_07153368.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 21-1]
 gi|300950169|ref|ZP_07164114.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 116-1]
 gi|300954386|ref|ZP_07166840.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 175-1]
 gi|300974378|ref|ZP_07172590.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 45-1]
 gi|300982623|ref|ZP_07176207.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 200-1]
 gi|301023261|ref|ZP_07187058.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 69-1]
 gi|301029711|ref|ZP_07192765.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 196-1]
 gi|301051142|ref|ZP_07197972.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 185-1]
 gi|301304987|ref|ZP_07211089.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 124-1]
 gi|301328556|ref|ZP_07221617.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 78-1]
 gi|301644986|ref|ZP_07244952.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 146-1]
 gi|306814077|ref|ZP_07448250.1| flagellar basal body rod protein FlgC [Escherichia coli NC101]
 gi|307137709|ref|ZP_07497065.1| flagellar basal body rod protein FlgC [Escherichia coli H736]
 gi|309798068|ref|ZP_07692443.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 145-7]
 gi|312968852|ref|ZP_07783059.1| flagellar basal-body rod protein FlgC [Escherichia coli 2362-75]
 gi|312971211|ref|ZP_07785389.1| flagellar basal-body rod protein FlgC [Escherichia coli 1827-70]
 gi|331641618|ref|ZP_08342753.1| flagellar basal-body rod protein FlgC [Escherichia coli H736]
 gi|331646332|ref|ZP_08347435.1| flagellar basal-body rod protein FlgC [Escherichia coli M605]
 gi|331652127|ref|ZP_08353146.1| flagellar basal-body rod protein FlgC [Escherichia coli M718]
 gi|331657136|ref|ZP_08358098.1| flagellar basal-body rod protein FlgC [Escherichia coli TA206]
 gi|331662480|ref|ZP_08363403.1| flagellar basal-body rod protein FlgC [Escherichia coli TA143]
 gi|331667474|ref|ZP_08368338.1| flagellar basal-body rod protein FlgC [Escherichia coli TA271]
 gi|331672594|ref|ZP_08373383.1| flagellar basal-body rod protein FlgC [Escherichia coli TA280]
 gi|331676865|ref|ZP_08377561.1| flagellar basal-body rod protein FlgC [Escherichia coli H591]
 gi|331682576|ref|ZP_08383195.1| flagellar basal-body rod protein FlgC [Escherichia coli H299]
 gi|332279738|ref|ZP_08392151.1| flagellar rod protein FlgC [Shigella sp. D9]
 gi|78100011|sp|P0ABX4|FLGC_ECO57 RecName: Full=Flagellar basal-body rod protein flgC; AltName:
          Full=Putative proximal rod protein
 gi|78100012|sp|P0ABX3|FLGC_ECOL6 RecName: Full=Flagellar basal-body rod protein flgC; AltName:
          Full=Putative proximal rod protein
 gi|78100013|sp|P0ABX2|FLGC_ECOLI RecName: Full=Flagellar basal-body rod protein flgC; AltName:
          Full=Putative proximal rod protein
 gi|12514612|gb|AAG55820.1|AE005317_9 flagellar biosynthesis, cell-proximal portion of basal-body rod
          [Escherichia coli O157:H7 str. EDL933]
 gi|26107615|gb|AAN79814.1|AE016759_88 Flagellar basal-body rod protein flgC [Escherichia coli CFT073]
 gi|1787314|gb|AAC74158.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli str. K-12 substr. MG1655]
 gi|4062651|dbj|BAA35882.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli str. K12 substr. W3110]
 gi|13360916|dbj|BAB34875.1| flagellar rod protein FlgC [Escherichia coli O157:H7 str. Sakai]
 gi|73855113|gb|AAZ87820.1| flagellar protein for cell-proximal portion of basal-body rod
          [Shigella sonnei Ss046]
 gi|81245871|gb|ABB66579.1| cell-proximal portion of basal-body rod [Shigella boydii Sb227]
 gi|91071800|gb|ABE06681.1| flagellar biosynthesis, cell-proximal portion of basal-body rod
          [Escherichia coli UTI89]
 gi|110342842|gb|ABG69079.1| flagellar basal-body rod protein FlgC [Escherichia coli 536]
 gi|115512384|gb|ABJ00459.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli APEC O1]
 gi|157066281|gb|ABV05536.1| flagellar basal-body rod protein FlgC [Escherichia coli HS]
 gi|157080557|gb|ABV20265.1| flagellar basal-body rod protein FlgC [Escherichia coli E24377A]
 gi|169755458|gb|ACA78157.1| flagellar basal-body rod protein FlgC [Escherichia coli ATCC
          8739]
 gi|169888560|gb|ACB02267.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli str. K-12 substr. DH10B]
 gi|187430031|gb|ACD09305.1| flagellar basal-body rod protein FlgC [Shigella boydii CDC
          3083-94]
 gi|187770492|gb|EDU34336.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4196]
 gi|188017999|gb|EDU56121.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4113]
 gi|188488408|gb|EDU63511.1| flagellar basal-body rod protein FlgC [Escherichia coli 53638]
 gi|188999102|gb|EDU68088.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4076]
 gi|189354569|gb|EDU72988.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4401]
 gi|189363308|gb|EDU81727.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4486]
 gi|189365512|gb|EDU83928.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4501]
 gi|189370511|gb|EDU88927.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC869]
 gi|189375937|gb|EDU94353.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC508]
 gi|190901474|gb|EDV61235.1| flagellar basal-body rod protein FlgC [Escherichia coli B7A]
 gi|190907299|gb|EDV66897.1| flagellar basal-body rod protein FlgC [Escherichia coli F11]
 gi|192927776|gb|EDV82390.1| flagellar basal-body rod protein FlgC [Escherichia coli E22]
 gi|194413537|gb|EDX29819.1| flagellar basal-body rod protein FlgC [Escherichia coli B171]
 gi|194422933|gb|EDX38927.1| flagellar basal-body rod protein FlgC [Escherichia coli 101-1]
 gi|208725984|gb|EDZ75585.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4206]
 gi|208732811|gb|EDZ81499.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4045]
 gi|208738014|gb|EDZ85697.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4042]
 gi|209162348|gb|ACI39781.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC4115]
 gi|209773398|gb|ACI85011.1| flagellar rod protein FlgC [Escherichia coli]
 gi|209773400|gb|ACI85012.1| flagellar rod protein FlgC [Escherichia coli]
 gi|209773402|gb|ACI85013.1| flagellar rod protein FlgC [Escherichia coli]
 gi|209773404|gb|ACI85014.1| flagellar rod protein FlgC [Escherichia coli]
 gi|209773406|gb|ACI85015.1| flagellar rod protein FlgC [Escherichia coli]
 gi|209911587|dbj|BAG76661.1| flagellar basal-body rod protein FlgC [Escherichia coli SE11]
 gi|215264355|emb|CAS08712.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217318884|gb|EEC27310.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. TW14588]
 gi|218351340|emb|CAU97046.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli 55989]
 gi|218360421|emb|CAQ97973.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli IAI1]
 gi|218364725|emb|CAR02415.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli S88]
 gi|218370409|emb|CAR18216.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli IAI39]
 gi|218426591|emb|CAR07419.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli ED1a]
 gi|218431579|emb|CAR12458.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli UMN026]
 gi|222032827|emb|CAP75566.1| flagellar basal-body rod protein flgC [Escherichia coli LF82]
 gi|226898150|gb|EEH84409.1| flagellar rod protein FlgC [Escherichia sp. 3_2_53FAA]
 gi|227836772|gb|EEJ47238.1| flagellar basal body rod protein FlgC [Escherichia coli 83972]
 gi|238861102|gb|ACR63100.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli BW2952]
 gi|242376878|emb|CAQ31595.1| flagellar basal-body rod protein FlgC, subunit of Flagellar Motor
          Complex and Flagellum [Escherichia coli BL21(DE3)]
 gi|253324946|gb|ACT29548.1| flagellar basal-body rod protein FlgC [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973081|gb|ACT38752.1| flagellar basal-body rod protein C [Escherichia coli B str.
          REL606]
 gi|253977295|gb|ACT42965.1| flagellar basal-body rod protein C [Escherichia coli BL21(DE3)]
 gi|254591856|gb|ACT71217.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia coli O157:H7 str. TW14359]
 gi|257753206|dbj|BAI24708.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O26:H11 str. 11368]
 gi|257758461|dbj|BAI29958.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O103:H2 str. 12009]
 gi|257763793|dbj|BAI35288.1| flagellar component FlgC of cell-proximal portion of basal-body
          rod [Escherichia coli O111:H- str. 11128]
 gi|260449786|gb|ACX40208.1| flagellar basal-body rod protein FlgC [Escherichia coli DH1]
 gi|281178183|dbj|BAI54513.1| flagellar basal-body rod protein FlgC [Escherichia coli SE15]
 gi|284920897|emb|CBG33960.1| flagellar basal-body rod protein FlgC [Escherichia coli 042]
 gi|290761967|gb|ADD55928.1| Cell-proximal portion of basal-body rod [Escherichia coli O55:H7
          str. CB9615]
 gi|291324183|gb|EFE63605.1| flagellar basal-body rod protein FlgC [Escherichia coli B088]
 gi|291428944|gb|EFF01969.1| flgC [Escherichia coli FVEC1412]
 gi|291434427|gb|EFF07400.1| flagellar basal-body rod protein FlgC [Escherichia coli B185]
 gi|294493232|gb|ADE91988.1| flagellar basal-body rod protein FlgC [Escherichia coli IHE3034]
 gi|298279836|gb|EFI21344.1| flagellar basal-body rod protein FlgC [Escherichia coli FVEC1302]
 gi|299877399|gb|EFI85610.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 196-1]
 gi|300297163|gb|EFJ53548.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 185-1]
 gi|300307088|gb|EFJ61608.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 200-1]
 gi|300318622|gb|EFJ68406.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 175-1]
 gi|300356864|gb|EFJ72734.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 198-1]
 gi|300397106|gb|EFJ80644.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 69-1]
 gi|300405497|gb|EFJ89035.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 84-1]
 gi|300410621|gb|EFJ94159.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 45-1]
 gi|300414170|gb|EFJ97480.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 115-1]
 gi|300421077|gb|EFK04388.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 182-1]
 gi|300450516|gb|EFK14136.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 116-1]
 gi|300456424|gb|EFK19917.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 21-1]
 gi|300463632|gb|EFK27125.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 187-1]
 gi|300526444|gb|EFK47513.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 119-7]
 gi|300530550|gb|EFK51612.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 107-1]
 gi|300839705|gb|EFK67465.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 124-1]
 gi|300844948|gb|EFK72708.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 78-1]
 gi|301076715|gb|EFK91521.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 146-1]
 gi|305852714|gb|EFM53162.1| flagellar basal body rod protein FlgC [Escherichia coli NC101]
 gi|307553076|gb|ADN45851.1| flagellar basal-body rod protein FlgC [Escherichia coli ABU
          83972]
 gi|307627456|gb|ADN71760.1| flagellar basal body rod protein FlgC [Escherichia coli UM146]
 gi|308118351|gb|EFO55613.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 145-7]
 gi|309701346|emb|CBJ00647.1| flagellar basal-body rod protein FlgC [Escherichia coli ETEC
          H10407]
 gi|310336413|gb|EFQ01599.1| flagellar basal-body rod protein FlgC [Escherichia coli 1827-70]
 gi|312286254|gb|EFR14167.1| flagellar basal-body rod protein FlgC [Escherichia coli 2362-75]
 gi|312945636|gb|ADR26463.1| flagellar basal body rod protein FlgC [Escherichia coli O83:H1
          str. NRG 857C]
 gi|315135706|dbj|BAJ42865.1| cell-proximal portion of basal-body rod [Escherichia coli DH1]
 gi|315253875|gb|EFU33843.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 85-1]
 gi|315287371|gb|EFU46782.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 110-3]
 gi|315291068|gb|EFU50431.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 153-1]
 gi|315296705|gb|EFU56000.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 16-3]
 gi|315618244|gb|EFU98834.1| flagellar basal-body rod protein FlgC [Escherichia coli 3431]
 gi|320179226|gb|EFW54184.1| Flagellar basal-body rod protein FlgC [Shigella boydii ATCC 9905]
 gi|320186979|gb|EFW61692.1| Flagellar basal-body rod protein FlgC [Shigella flexneri CDC
          796-83]
 gi|320189757|gb|EFW64413.1| Flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. EC1212]
 gi|320196444|gb|EFW71067.1| Flagellar basal-body rod protein FlgC [Escherichia coli
          WV_060327]
 gi|320637525|gb|EFX07325.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7
          str. G5101]
 gi|320643086|gb|EFX12287.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H-
          str. 493-89]
 gi|320648544|gb|EFX17199.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H-
          str. H 2687]
 gi|320653858|gb|EFX21932.1| flagellar basal body rod protein FlgC [Escherichia coli O55:H7
          str. 3256-97 TW 07815]
 gi|320659338|gb|EFX26907.1| flagellar basal body rod protein FlgC [Escherichia coli O55:H7
          str. USDA 5905]
 gi|320664473|gb|EFX31624.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7
          str. LSU-61]
 gi|323156881|gb|EFZ43015.1| flagellar basal-body rod protein FlgC [Escherichia coli EPECa14]
 gi|323163756|gb|EFZ49575.1| flagellar basal-body rod protein FlgC [Escherichia coli E128010]
 gi|323174797|gb|EFZ60412.1| flagellar basal-body rod protein FlgC [Escherichia coli LT-68]
 gi|323175695|gb|EFZ61289.1| flagellar basal-body rod protein FlgC [Escherichia coli 1180]
 gi|323185803|gb|EFZ71164.1| flagellar basal-body rod protein FlgC [Escherichia coli 1357]
 gi|323190586|gb|EFZ75858.1| flagellar basal-body rod protein FlgC [Escherichia coli RN587/1]
 gi|323937814|gb|EGB34078.1| flagellar basal-body rod protein FlgC [Escherichia coli E1520]
 gi|323942543|gb|EGB38710.1| flagellar basal-body rod protein FlgC [Escherichia coli E482]
 gi|323947624|gb|EGB43628.1| flagellar basal-body rod protein FlgC [Escherichia coli H120]
 gi|323953240|gb|EGB49106.1| flagellar basal-body rod protein FlgC [Escherichia coli H252]
 gi|323957898|gb|EGB53610.1| flagellar basal-body rod protein FlgC [Escherichia coli H263]
 gi|323962673|gb|EGB58251.1| flagellar basal-body rod protein FlgC [Escherichia coli H489]
 gi|323967015|gb|EGB62441.1| flagellar basal-body rod protein FlgC [Escherichia coli M863]
 gi|323973337|gb|EGB68526.1| flagellar basal-body rod protein FlgC [Escherichia coli TA007]
 gi|323976553|gb|EGB71641.1| flagellar basal-body rod protein FlgC [Escherichia coli TW10509]
 gi|324007914|gb|EGB77133.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 57-2]
 gi|324013348|gb|EGB82567.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 60-1]
 gi|324017422|gb|EGB86641.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 117-3]
 gi|324117355|gb|EGC11262.1| flagellar basal-body rod protein FlgC [Escherichia coli E1167]
 gi|326339296|gb|EGD63110.1| Flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. 1125]
 gi|326344743|gb|EGD68491.1| Flagellar basal-body rod protein FlgC [Escherichia coli O157:H7
          str. 1044]
 gi|327253473|gb|EGE65111.1| flagellar basal-body rod protein FlgC [Escherichia coli STEC_7v]
 gi|330910888|gb|EGH39398.1| flagellar basal-body rod protein FlgC [Escherichia coli AA86]
 gi|331038416|gb|EGI10636.1| flagellar basal-body rod protein FlgC [Escherichia coli H736]
 gi|331045084|gb|EGI17211.1| flagellar basal-body rod protein FlgC [Escherichia coli M605]
 gi|331050405|gb|EGI22463.1| flagellar basal-body rod protein FlgC [Escherichia coli M718]
 gi|331055384|gb|EGI27393.1| flagellar basal-body rod protein FlgC [Escherichia coli TA206]
 gi|331060902|gb|EGI32866.1| flagellar basal-body rod protein FlgC [Escherichia coli TA143]
 gi|331065059|gb|EGI36954.1| flagellar basal-body rod protein FlgC [Escherichia coli TA271]
 gi|331070237|gb|EGI41603.1| flagellar basal-body rod protein FlgC [Escherichia coli TA280]
 gi|331075554|gb|EGI46852.1| flagellar basal-body rod protein FlgC [Escherichia coli H591]
 gi|331080207|gb|EGI51386.1| flagellar basal-body rod protein FlgC [Escherichia coli H299]
 gi|332094031|gb|EGI99083.1| flagellar basal-body rod protein FlgC [Shigella boydii 3594-74]
 gi|332102090|gb|EGJ05436.1| flagellar rod protein FlgC [Shigella sp. D9]
 gi|332342620|gb|AEE55954.1| flagellar basal-body rod protein FlgC [Escherichia coli UMNK88]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|317014993|gb|ADU82429.1| flagellar basal body rod protein FlgC [Helicobacter pylori
          Gambia94/24]
          Length = 161

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          L+ F+ +    +    +   I  NI NA+     +   Y R++ + 
Sbjct: 3  LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVF 48


>gi|317153861|ref|YP_004121909.1| flagellar basal body rod protein [Desulfovibrio aespoeensis
          Aspo-2]
 gi|316944112|gb|ADU63163.1| flagellar basal body rod protein [Desulfovibrio aespoeensis
          Aspo-2]
          Length = 108

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQR 56
           +  +  S        NI N +   +          P  + V V + R
Sbjct: 6  LSALSALSTVQQVSANNIANVNTDGFSASSVTLESGPADQGVRVGSIR 53


>gi|157362948|ref|YP_001469715.1| flagellar basal-body rod protein FlgB [Thermotoga lettingae TMO]
 gi|157313552|gb|ABV32651.1| flagellar basal-body rod protein FlgB [Thermotoga lettingae TMO]
          Length = 125

 Score = 39.6 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          F   +   + A  +     +NI NA+   Y R+  +    
Sbjct: 6  FQIIKTAMDVAILRQNIFAQNIANAETPGYKRKYVVFEEL 45


>gi|291235702|ref|XP_002737783.1| PREDICTED: DNA-directed RNA polymerase II largest subunit-like
           [Saccoglossus kowalevskii]
          Length = 1312

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/365 (5%), Positives = 69/365 (18%), Gaps = 7/365 (1%)

Query: 31  ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90
           ++   Y                    S         L   S          ++ +     
Sbjct: 589 SNTLAYTSHTPAYHTPAYTSHTPAYASNTPAYASNTLAYTSHTPAYASNTLAYISHTPAY 648

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           ++      S T   +    +  S +   + +         A          +  +     
Sbjct: 649 TSHTPAYTSHTPAYASNTLAYTSNTLAYASNTPAYISHTLAFYTSCTLAYISNTLAYASN 708

Query: 151 DADKEIELEISNLRRFLSELTVV----NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
                                 +    N          + +H      + L         
Sbjct: 709 TLAYASNTLAYTSNTLAYASNTLAYASNTPAYTSNTLAYTSHTLAYTSNTLHIPHPAYTS 768

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            +    ++     + +   T              +     +   P +       ++   A
Sbjct: 769 HTPAYTSHTPAYAFNTLAYTSHTLAYTSHTPAYTSHTPAYTSHTPAYTSHTPAYTSHTPA 828

Query: 267 VPKGKIK---ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI 323
                            + +    +     +  L  +   +        ++P   +    
Sbjct: 829 YTSHTPAYTSYTPAYASNTLAYTSHTPAYASNTLAYTSHTRLTYPTPCLHIPHPGLHIPH 888

Query: 324 KDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFN 383
               +      S T        +  S      S +  ++ +      +      +  ++ 
Sbjct: 889 PAYTSHTPAYTSHTSAYASNTLAYISHTPAYASNTLAYISHTPAYTSHTPAYTSHTPAYT 948

Query: 384 KNFIF 388
            N + 
Sbjct: 949 SNTLA 953


>gi|167465319|ref|ZP_02330408.1| Flagellar basal body protein [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 136

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 18/50 (36%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55
            +  +   + ++ +   I  N+ N D   + R D +     +N    + 
Sbjct: 8  SLSLMERSLDASALRQRVIANNVANVDTPQFKRSDVLFEELLQNEITGSV 57


>gi|255523706|ref|ZP_05390672.1| flagellar basal-body rod protein FlgC [Clostridium
          carboxidivorans P7]
 gi|296186710|ref|ZP_06855112.1| flagellar basal-body rod protein FlgC [Clostridium
          carboxidivorans P7]
 gi|255512575|gb|EET88849.1| flagellar basal-body rod protein FlgC [Clostridium
          carboxidivorans P7]
 gi|296048747|gb|EFG88179.1| flagellar basal-body rod protein FlgC [Clostridium
          carboxidivorans P7]
          Length = 144

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 6/49 (12%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTIS 46
                + +  +    +  +I  NI N D         Y R+  +   +
Sbjct: 5  FNNLRISASGLSAERLRMDTIASNIANVDTTRGANGQPYRRKIAVFQEN 53


>gi|254785369|ref|YP_003072798.1| flagellar basal body rod protein FlgC [Teredinibacter turnerae
          T7901]
 gi|237685992|gb|ACR13256.1| flagellar basal-body rod protein FlgC [Teredinibacter turnerae
          T7901]
          Length = 145

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNI 28
          MSL  +FN A +  N  S +  +   NI
Sbjct: 1  MSLSNIFNVAGSGMNAQSIRLNTTASNI 28



 Score = 36.5 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            VN+ EE++ +I   +S+ ++ +++    +M+Q +L
Sbjct: 106 NVNVVEEMTNMISASRSFQVNVEVMNSAKQMVQRVL 141


>gi|90411003|ref|ZP_01219017.1| flagellar basal body rod protein [Photobacterium profundum 3TCK]
 gi|90328216|gb|EAS44527.1| flagellar basal body rod protein [Photobacterium profundum 3TCK]
          Length = 138

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTISPENVT 51
          MSL  VFN   +  +  S +  +   N+ NA++      + Y  R  +   +  + +
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALNSAS 57



 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML + L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQSNVQVADASKQMLMSTLQM 136


>gi|327480017|gb|AEA83327.1| flagellar basal body rod protein FlgB [Pseudomonas stutzeri DSM
          4166]
          Length = 134

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      SQ+   +  NI NAD  NY  RD   +  
Sbjct: 1  MSISFDKALGIHEKALGFRSQRAEVLANNIANADTPNYKARDLDFSSV 48


>gi|315281376|ref|ZP_07870013.1| flagellar basal-body rod protein FlgC [Listeria marthii FSL S4-120]
 gi|313614973|gb|EFR88480.1| flagellar basal-body rod protein FlgC [Listeria marthii FSL S4-120]
          Length = 136

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 122

Query: 468 TDKMLQTLLEGVK 480
            +KM++  LE  +
Sbjct: 123 NEKMMEKDLEIGR 135



 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTMTTI 45
          +    N + +  N A Q       NI NAD+        ++R+  + + 
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSE 49


>gi|285018211|ref|YP_003375922.1| flagellar basal body rod protein [Xanthomonas albilineans GPE
          PC73]
 gi|283473429|emb|CBA15934.1| probable flagellar basal body rod protein [Xanthomonas
          albilineans]
          Length = 135

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 13/73 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTT-------ISP 47
          MS L +F+ A +     S + ++I  N+ NAD+        Y   + +          + 
Sbjct: 1  MSNLPIFDVAGSALQAQSVRMSTIASNLANADSVAGSAEAAYKPIEPIFQAVRDPHDSAL 60

Query: 48 ENVTVVTQRSENK 60
            V V        
Sbjct: 61 TGVNVKEISQSKD 73


>gi|322421737|ref|YP_004200960.1| flagellar basal-body rod protein FlgC [Geobacter sp. M18]
 gi|320128124|gb|ADW15684.1| flagellar basal-body rod protein FlgC [Geobacter sp. M18]
          Length = 145

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M      + + +       +   I  N+ N ++    +   Y R+D + T +P
Sbjct: 1  MDFFTSMDISASALAAERTRMNLISSNLANVNSTRTAEGGPYRRKDAVFTATP 53


>gi|194365679|ref|YP_002028289.1| flagellar basal body rod protein FlgF [Stenotrophomonas maltophilia
           R551-3]
 gi|194348483|gb|ACF51606.1| flagellar basal-body rod protein FlgF [Stenotrophomonas maltophilia
           R551-3]
          Length = 249

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 29/121 (23%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q   ++  N+ N+D   +      T   P        R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAFPIRGPGFASRVDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    S     + L         ++      +      + L  +        S   
Sbjct: 61  DAGFNRTPGSQHITGKPLDLSLQTGTWLAVQSSDGSEAYTRGAALSVTPNGQLVTSSGRP 120

Query: 123 L 123
           +
Sbjct: 121 V 121


>gi|94968683|ref|YP_590731.1| flagellar basal-body rod protein FlgB [Candidatus Koribacter
          versatilis Ellin345]
 gi|94550733|gb|ABF40657.1| flagellar basal-body rod protein FlgB [Candidatus Koribacter
          versatilis Ellin345]
          Length = 118

 Score = 39.6 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          + N A+   + ++ +   I  N+ N D   Y  RD    
Sbjct: 8  LLNVAERALDVSAARQRVIANNMANVDTPGYHTRDIDFA 46


>gi|255022067|ref|ZP_05294073.1| flagellar basal-body rod protein FlgC [Acidithiobacillus caldus
          ATCC 51756]
 gi|254968553|gb|EET26109.1| flagellar basal-body rod protein FlgC [Acidithiobacillus caldus
          ATCC 51756]
          Length = 141

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD-------NKNYVRRDTMTTISPENVTVV 53
          MS++   +      +  + +  ++V N+ NA+          Y  R+ +    P+     
Sbjct: 6  MSIINALSVTGAAMSAQNARLGAVVSNLANANSVTSSTGTP-YKAREVVFEAVPDGTASG 64

Query: 54 TQ 55
            
Sbjct: 65 GI 66


>gi|237812406|ref|YP_002896857.1| Hep_Hag family protein [Burkholderia pseudomallei MSHR346]
 gi|237503730|gb|ACQ96048.1| Hep_Hag family protein [Burkholderia pseudomallei MSHR346]
          Length = 1185

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/437 (6%), Positives = 79/437 (18%), Gaps = 3/437 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 275 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 331

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 332 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 391

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 392 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 451

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 452 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 511

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  ++                           +     + 
Sbjct: 512 STANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 571

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 572 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 631

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            D+   +       G N+  T  +   +         + +   
Sbjct: 632 TASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASG 691

Query: 422 HMKSQVVFNHISESYSN 438
              +    N  +   ++
Sbjct: 692 DNSTASGTNASATGENS 708


>gi|254179682|ref|ZP_04886281.1| haemagglutinin family protein [Burkholderia pseudomallei 1655]
 gi|184210222|gb|EDU07265.1| haemagglutinin family protein [Burkholderia pseudomallei 1655]
          Length = 1152

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/437 (6%), Positives = 79/437 (18%), Gaps = 3/437 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 298 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 354

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 355 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 414

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 415 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 474

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 475 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 534

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  ++                           +     + 
Sbjct: 535 STANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 594

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 595 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 654

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            D+   +       G N+  T  +   +         + +   
Sbjct: 655 TASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASG 714

Query: 422 HMKSQVVFNHISESYSN 438
              +    N  +   ++
Sbjct: 715 DNSTASGTNASATGENS 731


>gi|126454276|ref|YP_001066348.1| putative outer membrane protein [Burkholderia pseudomallei 1106a]
 gi|242316341|ref|ZP_04815357.1| hemagglutinin family protein [Burkholderia pseudomallei 1106b]
 gi|126227918|gb|ABN91458.1| putative outer membrane protein [Burkholderia pseudomallei 1106a]
 gi|242139580|gb|EES25982.1| hemagglutinin family protein [Burkholderia pseudomallei 1106b]
          Length = 1186

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/437 (6%), Positives = 79/437 (18%), Gaps = 3/437 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 276 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 332

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 333 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 392

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 393 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 452

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 453 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 512

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  ++                           +     + 
Sbjct: 513 STANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 572

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 573 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 632

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            D+   +       G N+  T  +   +         + +   
Sbjct: 633 TASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASG 692

Query: 422 HMKSQVVFNHISESYSN 438
              +    N  +   ++
Sbjct: 693 DNSTASGTNASATGENS 709


>gi|332163397|ref|YP_004299974.1| putative autotransporter protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667627|gb|ADZ44271.1| putative autotransporter protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862182|emb|CBX72344.1| hypothetical protein YEW_DQ15450 [Yersinia enterocolitica W22703]
          Length = 1080

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/413 (6%), Positives = 84/413 (20%), Gaps = 9/413 (2%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDH 95
           T+ + S  +   ++     K   +      S        L    +     +         
Sbjct: 150 TVISTSGSSAYGISGAGGAKLTVNNTTINSSGGGSYGIYLSDIGSALSGANNTINNTSSA 209

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                      +  +L++ + N++    G +V  ++  ++     +    Q         
Sbjct: 210 SGTGVYIGNGGINATLDNTTINMTNGYAGVSVGRDSTIIMDGLTATGNMNQVFDITGSAT 269

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +     +L        + N +        ++ +      +  +   +    ++    + +
Sbjct: 270 VSNANIDLASGAVLRAMGNSSTNKAVIILNNINAISHSGNATMVNANMNADVTINGGSYH 329

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
               Y              +        T    +  I   G     +            +
Sbjct: 330 SKGTYAMG--IWVPDTTSSVKVNNAEFITEGDGATAIENRGTATVDSTVVRTSGNSSHGI 387

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                            +  +   +    +     +           +           +
Sbjct: 388 YSESIFNATNMSISTAGVGSIGATAARGGNLNLAGATINTTGASGMVLGTFIGSSINAKN 447

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            T                     K        +             ++K  + +      
Sbjct: 448 ITATSTGASAYALWTQTSSSIALKDSQITTSGVNAGGIYAAGSNAVYSKVMLDNSQVVSE 507

Query: 396 TNVTLLEYARNSIGWLEKNRS--DSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +  Y  N    +         + L + +      ++   +    VNL  
Sbjct: 508 NGAGVRAYGANINIDVSNGSQLIGGNGLLVNASTNVGTVASPLNIISNVNLNA 560


>gi|289523317|ref|ZP_06440171.1| flagellar hook-associated protein 3 [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503009|gb|EFD24173.1| flagellar hook-associated protein 3 [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 882

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/423 (9%), Positives = 99/423 (23%), Gaps = 24/423 (5%)

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V      K    K+      ++           + + + +    +      +   R +L 
Sbjct: 467 VNVEVGGKGYTVKLYRDQVGSLSGSTWNVDALKVAKAIQSQVGEDLIGYRELEDGRVAL- 525

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                               ++       +     I A+      +    +    +    
Sbjct: 526 ---------YSKTGQHLRVTDLPFGDPQFSDYTSGIAANLRVHSGIAGGEINGTTAPSGG 576

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           V         S     D         ++I++ I        +  +      G++  + + 
Sbjct: 577 VIRI-----RSGGSTVDVAVLAGETPEEIAKKIKGLAGSWLDVSLYDADLSGSSGSQRIS 631

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
                    S      S       +  +    S V        L I  +      +    
Sbjct: 632 LAAKDGSALSVYDVQGSIAQSFLQIDTALRSASDVSTWSGSGTLSITVNGYTHTIDTAGM 691

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLR 352
            A  L  + + +         V      D    L +     I     V        + +R
Sbjct: 692 TANDLADTVNARFQSGDVRAEVVENDTGDLRFVLWSPRGYAIEAQGDVPGLSSPAHTPIR 751

Query: 353 DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL-LEYARNSIGWL 411
            G     + +    +            D   +      V GI+ N+   ++ A + +  +
Sbjct: 752 GGIFPYNQTITVRTSANINSTDFFGLLDDLVQALRQGDVEGISGNILPKIDDAIDDVLRV 811

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSN----TVGVNLQEELSFLIKVEQSYNIS----NK 463
                     +  S      ++ +Y+         +L E  +     +  Y  S     +
Sbjct: 812 RTQSGALQKRYETSSSRLKQMNLNYNELYSKVSDTDLAEAATKFAMAQSVYQASLATIAR 871

Query: 464 LIM 466
           +I 
Sbjct: 872 IIQ 874


>gi|330445346|ref|ZP_08308998.1| flagellar basal-body rod protein FlgC [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
 gi|328489537|dbj|GAA03495.1| flagellar basal-body rod protein FlgC [Photobacterium leiognathi
          subsp. mandapamensis svers.1.1.]
          Length = 138

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTIS 46
          MSL  VFN   +  +  S +  +   N+ NA++      + Y  R  +   +
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAA 52


>gi|197120201|ref|YP_002140628.1| flagellar basal body rod protein FlgC [Geobacter bemidjiensis
          Bem]
 gi|197089561|gb|ACH40832.1| flagellar basal body rod protein FlgC [Geobacter bemidjiensis
          Bem]
          Length = 145

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M      + +         +   I  N+ N ++    +   Y R+D + T +P
Sbjct: 1  MDFFTSMDISATALAAERTRMNLISSNLANVNSTRTAEGGPYRRKDAVFTATP 53


>gi|318607894|emb|CBY29392.1| putative pertactin family virulence factor/autotransporter
           precursor [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 1080

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/413 (6%), Positives = 84/413 (20%), Gaps = 9/413 (2%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDH 95
           T+ + S  +   ++     K   +      S        L    +     +         
Sbjct: 150 TVISTSGSSAYGISGAGGAKLTVNNTTINSSGGGSYGIYLSDIGSALSGANNTINNTSSA 209

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                      +  +L++ + N++    G +V  ++  ++     +    Q         
Sbjct: 210 SGTGVYIGNGGINATLDNTTINMTNGYAGVSVGRDSTIIMDGLTATGNMNQVFDITGSAT 269

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +     +L        + N +        ++ +      +  +   +    ++    + +
Sbjct: 270 VSNANIDLASGAVLRAMGNSSTNKAVIILNNINAISHSGNATMVNANMNADVTINGGSYH 329

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
               Y              +        T    +  I   G     +            +
Sbjct: 330 SKGTYAMG--IWVPDTTSSVKVNNAEFITEGDGATAIENRGTATVDSTVVRTSGNSSHGI 387

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                            +  +   +    +     +           +           +
Sbjct: 388 YSESIFNATNMSISTAGVGSIGATAARGGNLNLAGATINTTGASGMVLGTFIGSSINAKN 447

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            T                     K        +             ++K  + +      
Sbjct: 448 ITATSTGASAYALWTQTSSSIALKDSQITTSGVNAGGIYAAGSNAVYSKVMLDNSQVVSE 507

Query: 396 TNVTLLEYARNSIGWLEKNRS--DSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +  Y  N    +         + L + +      ++   +    VNL  
Sbjct: 508 NGAGVRAYGANINIDVSNGSQLIGGNGLLVNASTNVGTVASPLNIISNVNLNA 560


>gi|167568105|ref|ZP_02361021.1| flagellar basal body rod protein FlgC [Burkholderia oklahomensis
          EO147]
 gi|167574223|ref|ZP_02367097.1| flagellar basal body rod protein FlgC [Burkholderia oklahomensis
          C6786]
          Length = 141

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPEN 49
          SL+ +F+ A +  +  SQ+      N+ NAD+        Y  +  +   +P  
Sbjct: 3  SLMNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMG 56


>gi|90579907|ref|ZP_01235715.1| flagellar basal body rod protein [Vibrio angustum S14]
 gi|90438792|gb|EAS63975.1| flagellar basal body rod protein [Vibrio angustum S14]
          Length = 138

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTISPENVT 51
          MSL  VFN   +  +  S +  +   N+ NA++      + Y  R  +   +  + +
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALNSAS 57


>gi|148252489|ref|YP_001237074.1| putative flagellar basal-body rod protein (flgC) [Bradyrhizobium
           sp. BTAi1]
 gi|146404662|gb|ABQ33168.1| putative flagellar basal-body rod protein (flgC) [Bradyrhizobium
           sp. BTAi1]
          Length = 125

 Score = 39.2 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 36/136 (26%), Gaps = 12/136 (8%)

Query: 344 YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEY 403
             +    L    S                 L      +++   +           T +  
Sbjct: 1   MNAATRRLEVSASNVANARSTGALPDANGKLPAGAPKAYDPLELVQSDVAGGGTQTTITR 60

Query: 404 ARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
           A             +   +           +       V+L +E+   +  + S+  + +
Sbjct: 61  ASQGTS--ASYEPSAPFANK----------DGLVAAPNVDLAQEMISQLVAKYSFAANAR 108

Query: 464 LIMFTDKMLQTLLEGV 479
           ++  +D+M + +++  
Sbjct: 109 VLKASDEMSRIVVDMK 124


>gi|120554030|ref|YP_958381.1| flagellar basal body rod protein FlgB [Marinobacter aquaeolei
          VT8]
 gi|120323879|gb|ABM18194.1| flagellar basal-body rod protein FlgB [Marinobacter aquaeolei
          VT8]
          Length = 132

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
                ++   +  N+ NAD   Y  RD      
Sbjct: 15 ALQARVKRAEVLANNLANADTPGYKARDVDFQAM 48


>gi|323492340|ref|ZP_08097493.1| flagellar basal body rod protein FlgC [Vibrio brasiliensis LMG
           20546]
 gi|323313387|gb|EGA66498.1| flagellar basal body rod protein FlgC [Vibrio brasiliensis LMG
           20546]
          Length = 144

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 39/123 (31%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTISPENVTVVT 54
           MS   +++ A +  N  + +  ++  N+ NAD      +  Y     +         +  
Sbjct: 1   MSFTDIYSIAGSAMNAQTVRLNTVASNLANADAVSANPDDAYKALKPVFATVYNKTQLTA 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 N   +++    S    ++  +    L        + +      ++ +  +  S+
Sbjct: 61  SEGAYPNAEVRIVDVVQSEGKAEKRFEPSNPLANDEGYVYYPDVDVVSEMADMMSATRSF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|307731365|ref|YP_003908589.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1003]
 gi|307585900|gb|ADN59298.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1003]
          Length = 141

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NA          Y  +  +  ++P   
Sbjct: 3  SLMNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVFAVAPLGG 57


>gi|239630870|ref|ZP_04673901.1| transporter [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527153|gb|EEQ66154.1| transporter [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 1103

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 95/398 (23%), Gaps = 4/398 (1%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++ A    +           +S    I NAD      +   T  +  N       S N  
Sbjct: 473 TINAGLTDSVKGLKQVQAGLSSANTQITNADVAG-STQQVQTLANGTNTLSSGASSLNSG 531

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +        S   G  +L     AL   ++     +      + +L  +    +  +++ 
Sbjct: 532 IGQYTSGVASLNTGIGQLSSQLPALSSGVNTLSTSSTQLAKGMDQLSGNSTVLASGMNQL 591

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 + +    + +   +     +       ++       +  L E+   +  ++  T
Sbjct: 592 SDKSGELTSGMNKLASQVQNLTGSAQQIVTLINQLPNGSQLTQPILEEIAKFSGGVQQLT 651

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                  D +   +     ++  I   T   +     + + +          +      +
Sbjct: 652 NGTSSLGDGIKTLNNGTTALNSGISTLTSGAHQLSSGIGSLNSQVPSLVSGVNQLNAGSS 711

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                + +       V   ++Q +   +  +   ++     V   Q+ L    + L    
Sbjct: 712 QLAGQNGTLNSGAAQVASGADQVNTGVQ-TLNTKVKAISEQVTTMQSGLTSADKALGT-- 768

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 +             G K                   Y S+ + +     V K  
Sbjct: 769 IADGSTSMKQYLTELQKSYLGKKFYIPNATLKSKTFKPALTTYMSDGNKITKLTVVLKGD 828

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                       +            + D    +    +
Sbjct: 829 PSTDAAAKQIEAIKTDMTAKLKHTPLADATVAVGGQTS 866


>gi|15644116|ref|NP_229165.1| flagellar basal-body rod protein FlgB [Thermotoga maritima MSB8]
 gi|148270548|ref|YP_001245008.1| flagellar basal-body rod protein FlgB [Thermotoga petrophila
          RKU-1]
 gi|4981924|gb|AAD36434.1|AE001790_6 flagellar basal-body rod protein FlgB [Thermotoga maritima MSB8]
 gi|147736092|gb|ABQ47432.1| flagellar basal-body rod protein FlgB [Thermotoga petrophila
          RKU-1]
          Length = 127

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 11/40 (27%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          F   +   + A  +      NI N     Y R+       
Sbjct: 6  FYTLKQAMDVALLRQNVHSLNIANVSTPGYKRKYVAFEEL 45


>gi|311992323|gb|ADQ26735.1| proximal rod protein [Aeromonas hydrophila]
          Length = 131

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTT 44
           +  S++   +  NI NAD   +  RD   +
Sbjct: 15 LSVRSKRAEVLSSNIANADTPGFKARDINFS 45


>gi|152983100|ref|YP_001353453.1| flagellar basal-body rod protein FlgB [Janthinobacterium sp.
          Marseille]
 gi|151283177|gb|ABR91587.1| flagellar basal-body rod protein FlgB [Janthinobacterium sp.
          Marseille]
          Length = 141

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46
          S++   +  NI NAD  NY  RD     +
Sbjct: 30 SKRLEVVASNIANADTPNYKARDIDFKTA 58


>gi|301065194|ref|YP_003787217.1| hypothetical protein LCAZH_0069 [Lactobacillus casei str. Zhang]
 gi|300437601|gb|ADK17367.1| Predicted membrane protein [Lactobacillus casei str. Zhang]
          Length = 1105

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 95/398 (23%), Gaps = 4/398 (1%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           ++ A    +           +S    I NAD      +   T  +  N       S N  
Sbjct: 473 TINAGLIDSVKGLKQVQAGLSSANTQITNADVAG-STQQVQTLANGTNTLSSGASSLNSG 531

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           +        S   G  +L     AL   ++     +      + +L  +    +  +++ 
Sbjct: 532 IGQYTSGVASLNTGIGQLSSQLPALSSGVNTLSTSSTQLAKGMDQLSGNSTVLASGMNQL 591

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 + +    + +   +     +       ++       +  L E+   +  ++  T
Sbjct: 592 SDKSGELTSGMNKLASQVQNLTGSAQQIVTLINQLPNGSQLTQSILEEIAKFSGGVQQLT 651

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
                  D +   +     ++  I   T   +     + + +          +      +
Sbjct: 652 NGTSSLGDGIKTLNNGTTALNSGISTLTSGTHQLSSGIGSLNSQVPSLVSGVNQLNTGSS 711

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
                + +       V   ++Q +   +  +   ++     V   Q+ L    + L    
Sbjct: 712 QLAGQNGTLNSGAAQVASGADQINTGVQ-TLNTKVKAISEQVTTMQSGLTSADKALGT-- 768

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                 +             G K                   Y S+ + +     V K  
Sbjct: 769 IADGSTSMKQYLTELQKSYLGKKFYIPNATLKSKTFKPALTTYMSDGNKITKLTVVLKGD 828

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT 399
                       +            + D    +    +
Sbjct: 829 PSTDAAAKQIEAIKTDMTAKLKHTPLADATVAVGGQTS 866


>gi|300311353|ref|YP_003775445.1| flagellar basal body rod protein FlgF [Herbaspirillum seropedicae
           SmR1]
 gi|300074138|gb|ADJ63537.1| flagellar basal body rod FlgF protein [Herbaspirillum seropedicae
           SmR1]
          Length = 245

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 52/233 (22%), Gaps = 8/233 (3%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           +  M+    T E      + +  ++  G        +A   + D +              
Sbjct: 6   YTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRAAPVVGDGLPTRTFVVDSTAGND 65

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVN-PQYRSNPSFLRDGG 355
                 +    A +       +IA    D      +  S  I  N      +   +   G
Sbjct: 66  FSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQTVLGDG 125

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
                       +A    +     +             +                   + 
Sbjct: 126 GPITIPPDATVAIAADGTVSAIPTNGIPNAVNVLGRIKLVNP-------DEKNMKRGDDG 178

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                           ++        VN+ E +  +I + + + ++ K+I   
Sbjct: 179 LFRTITGAAQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTA 231


>gi|288554368|ref|YP_003426303.1| flagellar basal-body rod protein [Bacillus pseudofirmus OF4]
 gi|288545528|gb|ADC49411.1| flagellar basal-body rod protein [Bacillus pseudofirmus OF4]
          Length = 272

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
          +L     A        Q+   +  N+ NA+   Y          P 
Sbjct: 1  MLRGLYGAAAGMIAQQQRQEMLTNNLANANTPGYKADQASLRAFPN 46



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 4/47 (8%), Positives = 21/47 (44%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            + + +     V+  + ++ ++   +S+  + +++   D+ L   + 
Sbjct: 220 QLQQGFIERSNVDASQTMTEMMNAYRSFEANQRILQAYDQSLDKAVN 266


>gi|154250381|ref|YP_001411206.1| flagellar basal-body rod protein FlgB [Fervidobacterium nodosum
          Rt17-B1]
 gi|154154317|gb|ABS61549.1| flagellar basal-body rod protein FlgB [Fervidobacterium nodosum
          Rt17-B1]
          Length = 131

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 2  SLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          S+    F+  +   +   ++     +NI NA+   Y R+      
Sbjct: 4  SIFNSNFDTLKTALDVQMKRQEIHAQNIANAETPGYKRKYIAFEE 48


>gi|42519658|ref|NP_965588.1| hypothetical protein LJ0667 [Lactobacillus johnsonii NCC 533]
 gi|41583947|gb|AAS09554.1| hypothetical protein LJ_0667 [Lactobacillus johnsonii NCC 533]
          Length = 1218

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/445 (7%), Positives = 102/445 (22%), Gaps = 41/445 (9%)

Query: 40  DTMTTISPENVTVVTQRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
           D     S       + +    +  +       +++  G   L    + +        +  
Sbjct: 449 DVKFASSVTEPNGKSIKRLYVDNQLGTVNSGVNTARNGLGTLSNGSKQITNGAVQLQNGA 508

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           N  ++   +L+      +   +       + + AE +       A    ++ +      +
Sbjct: 509 NQLSNGTGRLQAGANQLASGTT------RLQNGAEALRSGTMRLATGAGRLESGTLNLQQ 562

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +      +              + ++     ++  + +  ++S  +  S      + +
Sbjct: 563 GAVQLENGTIKLANGAASLQSGTQSLQNGTQALVNGLNTMSAQLSGQMN-SATKAQLDAL 621

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                      + + + +     +  T   ++N   +     +           +K L  
Sbjct: 622 QKGLPQINNGIQQLNQALGQSSSSVDTAGLKANLTDVGTQAKTIGDNLTQAGNTLKGLQS 681

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
               +    + +L +     + S    D             +         K     S  
Sbjct: 682 SGAGLSDSEKAELTQAYAQAMDSAKLNDQQKQAMSAAFSQILGKVESASTQKTQNLTSSL 741

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
             V    ++     +  G  +      ++ L G    +++     N        A     
Sbjct: 742 QSVAGNIQAAGEADKKLGESANNVGNTLQTLQGLMGQVDNLKQQVNTLATASNTALPGAT 801

Query: 398 VTLLEYARNSI---------------------------GWLEKNRSDSHDLHMKSQVVFN 430
             L + +                               G L            +      
Sbjct: 802 TALNQLSSGLTQVQGAVAQGAAGASRLNDGAARLNSGAGQLASGLQAGVAGSSQLANGAG 861

Query: 431 HISESYSN-----TVGVNLQEELSF 450
            ++            G+N   +L+ 
Sbjct: 862 QLANGAGQLNTGLQSGLNGTNQLAN 886


>gi|15607023|ref|NP_214405.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5]
 gi|2984276|gb|AAC07801.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5]
          Length = 241

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/176 (7%), Positives = 40/176 (22%), Gaps = 10/176 (5%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRR--DTMTTISPENVTVV-------TQRSENKNMF 63
                 ++      N+ N +   + +     ++   P    V        +       + 
Sbjct: 14  GMLLQERKLDVSTNNMANVNTPAFKKDYLTAVSYYVPNGQKVQNTNPFEPSNNYVYPIVN 73

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
           + +      A+ +           E   A    N          R + E +        +
Sbjct: 74  EVIPVLSQGALVKTENPLDLAIEGEGFFAVRGPNGILYTRKGIFRINEEGFLTTEEGYQV 133

Query: 124 GKTVIDNAEEVV-QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               ++  +        T    +        +     + N+++   +    N    
Sbjct: 134 LDENLNPIQIQGQNVKITKDGTIFVDENPVGRLGIFNLQNIQKLGEDFFQGNPTPA 189


>gi|170682563|ref|YP_001744106.1| flagellar basal body rod protein FlgC [Escherichia coli SMS-3-5]
 gi|170520281|gb|ACB18459.1| flagellar basal-body rod protein FlgC [Escherichia coli SMS-3-5]
          Length = 134

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN-KN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NAD+        Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSLTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|152965614|ref|YP_001361398.1| hypothetical protein Krad_1648 [Kineococcus radiotolerans
          SRS30216]
 gi|151360131|gb|ABS03134.1| protein of unknown function DUF1078 domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 131

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          MS+      A        +   ++  N+ N + 
Sbjct: 1  MSIFDAIGIAGTGVTVNRKWMDAVSDNLANINT 33


>gi|322382306|ref|ZP_08056213.1| flagellar basal body rod protein FlgB-like protein [Paenibacillus
          larvae subsp. larvae B-3650]
 gi|321153659|gb|EFX46034.1| flagellar basal body rod protein FlgB-like protein [Paenibacillus
          larvae subsp. larvae B-3650]
          Length = 137

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 18/50 (36%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55
            +  +   + ++ +   I  N+ N D   + R D +     +N    + 
Sbjct: 9  SLSLMERSLDASALRQRVIANNVANVDTPQFKRSDVLFEELLQNEITGSV 58


>gi|190573788|ref|YP_001971633.1| hypothetical protein Smlt1808 [Stenotrophomonas maltophilia
          K279a]
 gi|190011710|emb|CAQ45329.1| conserved hypothetical protein [Stenotrophomonas maltophilia
          K279a]
          Length = 99

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 3/93 (3%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVR---RDTMTTISPENVTVVTQRSEN 59
          +  V   A      A Q       N+ N    +  R   + +          V    ++ 
Sbjct: 1  MNNVMGIALGGMRAAQQGVQVAAHNVANLATPDAQRLQLQRSTVEQGGVQAAVTPTGADV 60

Query: 60 KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
                +L A +  +             +M+ +
Sbjct: 61 SAPLGDLLAAKAEVVAFASNAAVIRRQDQMLGS 93


>gi|167835109|ref|ZP_02461992.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis
          MSMB43]
          Length = 141

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPEN 49
          SL+ +F+ A +  +  SQ+      N+ NAD+        Y  +  +   +P  
Sbjct: 3  SLMNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMG 56


>gi|51246505|ref|YP_066389.1| flagellar basal-body rod protein (FlgB) [Desulfotalea
          psychrophila LSv54]
 gi|50877542|emb|CAG37382.1| related to flagellar basal-body rod protein (FlgB) [Desulfotalea
          psychrophila LSv54]
          Length = 137

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 2/32 (6%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
             + Q    I  NI NA+   Y  R      
Sbjct: 20 LRASKQ--EVISSNIANAETPGYAARRFNFEE 49


>gi|220934395|ref|YP_002513294.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995705|gb|ACL72307.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 246

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 33/150 (22%), Gaps = 6/150 (4%)

Query: 3   LLAVFNKAQNICN--NASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           +  +   A +       +Q   +  +N+ NA+   +     + T   + V          
Sbjct: 1   MDRMLYVAMSGAKETALTQARNT--QNLANANTTGFKASLDVFTSK-QVVGPGHGTRTYA 57

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEM-MSADDHYNNSPTHYISKLRDSLESYSKNLS 119
              D  +      +                ++               LR          +
Sbjct: 58  LTQDMKVDLSPGPLQATGRDLDVAVQGNGWIAVQAPDGTEAYTRAGDLRVDSVGLLTTGT 117

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
              +       A    + F   +     IR
Sbjct: 118 GLPVLGEGGPIAVPPFETFEIGSDGTISIR 147


>gi|254853085|ref|ZP_05242433.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           R2-503]
 gi|255521221|ref|ZP_05388458.1| flagellar basal body rod protein FlgC [Listeria monocytogenes FSL
           J1-175]
 gi|300764524|ref|ZP_07074517.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           N1-017]
 gi|258606433|gb|EEW19041.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           R2-503]
 gi|300514878|gb|EFK41932.1| flagellar basal-body rod protein FlgC [Listeria monocytogenes FSL
           N1-017]
          Length = 136

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +  +   ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGNVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 122

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 123 NEKMME 128



 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTMTTI 45
          +    N + +  N A Q       NI NAD+        ++R+  + + 
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSE 49


>gi|15594639|ref|NP_212428.1| flagellar basal body rod protein FlgB [Borrelia burgdorferi B31]
 gi|223888689|ref|ZP_03623280.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 64b]
 gi|1706829|sp|P52608|FLGB_BORBU RecName: Full=Flagellar basal-body rod protein flgB
 gi|1165278|gb|AAA85617.1| FlgB [Borrelia burgdorferi]
 gi|2688172|gb|AAC66654.1| flagellar basal-body rod protein (flgB) [Borrelia burgdorferi
          B31]
 gi|223885505|gb|EEF56604.1| flagellar basal-body rod protein FlgB [Borrelia burgdorferi 64b]
          Length = 135

 Score = 39.2 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
          + I  NI N D  N+ R       
Sbjct: 23 SVISDNIANIDTPNFKRSKISFES 46


>gi|58584098|ref|YP_203114.1| hemagglutinin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58428692|gb|AAW77729.1| hemagglutinin [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 998

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/411 (7%), Positives = 74/411 (18%), Gaps = 15/411 (3%)

Query: 31  ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90
           A   N  R  T T+ +     V +                 +    +        +    
Sbjct: 10  ATTVNLTRSGTATSGTDYTGAVTSVMVPANTASASFSVTPVADTTVETDETVTFQVASGT 69

Query: 91  SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
                  +S T  I        S + + +                              +
Sbjct: 70  GYSTGSPSSATATIVNDDFPSASIAVSPASVTEDGATNL-----------LYTVTLNQPS 118

Query: 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
                I   +       ++   VN  +                 D  ++    ++     
Sbjct: 119 PTALSIGFGVGGTATSGTDYAAVNSPLVIAAGQTTGTITINPTADSTVEPDETVVISLNA 178

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
                     ++ GT L +     I+   + + T  S  +                    
Sbjct: 179 GSGYTVGSPNSATGTILNDDAVVTISPALLPAATAGSAYSQTLSASGGTPGYTFVVSAGT 238

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
               L      V+             +  + S        +  +    +A     L    
Sbjct: 239 LPAGLTLSASGVLSGTPTASGSFNFTVTATDSGAPTSGSRAYTLT---VAGANVTLPATT 295

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
               +     +         +                             +   +F F  
Sbjct: 296 LPAGTAGQAYSSAITPATGGIAPYSYALTAGALPAGITLNTSSGTLSGTTTSVGSFNFTV 355

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
            A  +T+ T  +  R     +      +                      G
Sbjct: 356 TATDSTSGTPSQGTRGYTLNIAAPT-IAVAPSTVPTATRGTAYSQTLTASG 405


>gi|269965426|ref|ZP_06179545.1| Flagellar basal-body rod protein flgC [Vibrio alginolyticus 40B]
 gi|269829905|gb|EEZ84135.1| Flagellar basal-body rod protein flgC [Vibrio alginolyticus 40B]
          Length = 70

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   ++Y  + ++   + +ML   L+ 
Sbjct: 31  NVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 68


>gi|323498422|ref|ZP_08103418.1| flagellar basal body rod protein FlgC [Vibrio sinaloensis DSM
          21326]
 gi|323316495|gb|EGA69510.1| flagellar basal body rod protein FlgC [Vibrio sinaloensis DSM
          21326]
          Length = 138

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+        Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGA 51



 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQM 136


>gi|300716216|ref|YP_003741019.1| cell-proximal portion of basal-body rod [Erwinia billingiae
          Eb661]
 gi|299062052|emb|CAX59168.1| Cell-proximal portion of basal-body rod [Erwinia billingiae
          Eb661]
          Length = 134

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI-SPENVTVV 53
          M+LL +F+ A +  N  SQ+      N+ NAD+        YV +  +    +       
Sbjct: 1  MALLNIFDIAGSAMNAQSQRLNVSASNLANADSVTGPDGQPYVAKQVVFQTDAVPGSPTG 60

Query: 54 TQRSE 58
            R  
Sbjct: 61 GVRVA 65


>gi|91202525|emb|CAJ72164.1| strongly similar to flagellar basal-body rod protein FlgC
           [Candidatus Kuenenia stuttgartiensis]
          Length = 147

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
              +     VN+  E+  L+   +SY  +  +I  +  +    L  +
Sbjct: 99  ENGFVEMPNVNIATEMVDLVTASRSYEANLAVINSSKDITNQALSII 145


>gi|289433989|ref|YP_003463861.1| flagellar basal-body rod protein FlgC [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|315301963|ref|ZP_07872959.1| flagellar basal-body rod protein FlgC [Listeria ivanovii FSL
           F6-596]
 gi|289170233|emb|CBH26773.1| flagellar basal-body rod protein FlgC [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313629670|gb|EFR97807.1| flagellar basal-body rod protein FlgC [Listeria ivanovii FSL
           F6-596]
 gi|313639044|gb|EFS04033.1| flagellar basal-body rod protein FlgC [Listeria seeligeri FSL
           S4-171]
          Length = 136

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 122

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 123 NEKMME 128



 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD 32
          +    N + +  N A Q       NI NAD
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANAD 30


>gi|119953093|ref|YP_945302.1| flagellar basal body rod protein FlgB [Borrelia turicatae 91E135]
 gi|119861864|gb|AAX17632.1| flagellar basal-body rod protein FlgB [Borrelia turicatae 91E135]
          Length = 137

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 1  MSLL---AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          MSL       + A    +  S + + I  N+ N D  N+ R       
Sbjct: 1  MSLNIFDRSIDLAHRYLDVLSLRQSVIADNVANVDTPNFKRSKVTFES 48


>gi|54308095|ref|YP_129115.1| flagellar basal body rod protein FlgC [Photobacterium profundum
          SS9]
 gi|46912521|emb|CAG19313.1| Putative flagellar basal body rod protein FlgC [Photobacterium
          profundum SS9]
          Length = 138

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  VFN   +  +  S +  +   N+ NA+
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANAN 32



 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   +SY  + ++   + +ML + L+ 
Sbjct: 99  NVNVMEEMANMISASRSYQSNVQVADASKQMLMSTLQM 136


>gi|32474824|ref|NP_867818.1| flagellar basal-body rod potein FlgC [Rhodopirellula baltica SH
          1]
 gi|32445364|emb|CAD75365.1| flagellar basal-body rod potein FlgC [Rhodopirellula baltica SH
          1]
 gi|327539962|gb|EGF26561.1| flagellar basal-body rod protein FlgC [Rhodopirellula baltica
          WH47]
          Length = 143

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 4/30 (13%), Positives = 12/30 (40%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENAD 32
          +++  + + +       +  +I  NI N  
Sbjct: 5  MISALDISTSALVAQRTRLNAISGNIANIS 34


>gi|109899401|ref|YP_662656.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas atlantica
           T6c]
 gi|109701682|gb|ABG41602.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas atlantica
           T6c]
          Length = 247

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            I         VN  EE+  +I +++ Y +  K +     +
Sbjct: 196 SIRNGMLEGSNVNPVEEMVDMISLQRHYEMQIKFMKEASDL 236


>gi|312884836|ref|ZP_07744528.1| flagellar basal body rod protein FlgC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367488|gb|EFP95048.1| flagellar basal body rod protein FlgC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 145

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTISPENVTVVT 54
           MS   +++ A +  N  S +  ++  N+ NAD      +  Y     +         +  
Sbjct: 1   MSFTDIYSIAGSAMNAQSVRLNTVASNLANADAVSANADDAYKALKPVFATVYNKTQLSV 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +   N   +++    S+   ++  +    L        + +      ++ +  +  S+
Sbjct: 61  SDNAYPNAEVRIVDVVQSSKQAEKRFEPSNPLANDEGYVYYPDIDVVAEMADMMSATRSF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|229017031|ref|ZP_04173951.1| Flagellar basal-body rod protein [Bacillus cereus AH1273]
 gi|229023212|ref|ZP_04179723.1| Flagellar basal-body rod protein [Bacillus cereus AH1272]
 gi|228738137|gb|EEL88622.1| Flagellar basal-body rod protein [Bacillus cereus AH1272]
 gi|228744302|gb|EEL94384.1| Flagellar basal-body rod protein [Bacillus cereus AH1273]
          Length = 177

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +      
Sbjct: 62 NTVSSNIANANTPGYKAQGVTFAE 85


>gi|285018722|ref|YP_003376433.1| hypothetical protein XALc_1955 [Xanthomonas albilineans GPE PC73]
 gi|283473940|emb|CBA16441.1| hypothetical protein XALc_1955 [Xanthomonas albilineans]
          Length = 102

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 13/52 (25%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
              A+        NI N     + R   +   S     V   +  +    D
Sbjct: 14 GMRAAASGLQVRANNIANLATDGFQRAVPVDHESAGGGVVSQVQVADGQGSD 65


>gi|237731005|ref|ZP_04561486.1| flagellar basal body rod protein FlgC [Citrobacter sp. 30_2]
 gi|226906544|gb|EEH92462.1| flagellar basal body rod protein FlgC [Citrobacter sp. 30_2]
          Length = 134

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NAD+ +      Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNMANADSVSGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|83720057|ref|YP_440799.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis
          E264]
 gi|167579486|ref|ZP_02372360.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis
          TXDOH]
 gi|167617583|ref|ZP_02386214.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis
          Bt4]
 gi|257140550|ref|ZP_05588812.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis
          E264]
 gi|83653882|gb|ABC37945.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis
          E264]
          Length = 141

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F+ A +  +  SQ+      N+ NAD+        Y  +  +   +P   
Sbjct: 3  SLMNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMGG 57


>gi|89075493|ref|ZP_01161904.1| Putative flagellar basal body rod protein FlgC [Photobacterium
          sp. SKA34]
 gi|89048765|gb|EAR54336.1| Putative flagellar basal body rod protein FlgC [Photobacterium
          sp. SKA34]
          Length = 138

 Score = 39.2 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTISPENVT 51
          MSL  VFN   +  +  S +  +   N+ NA++      + Y  R  +   +  + +
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALNSAS 57


>gi|117621022|ref|YP_857346.1| flagellar basal-body rod protein FlgB [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|117562429|gb|ABK39377.1| flagellar basal-body rod protein FlgB [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
          Length = 132

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTT 44
           +  S++   +  NI NAD   +  RD   +
Sbjct: 16 LSVRSKRAEVLSSNIANADTPGFKARDINFS 46


>gi|258514001|ref|YP_003190223.1| flagellar basal-body rod protein FlgC [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257777706|gb|ACV61600.1| flagellar basal-body rod protein FlgC [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 140

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          MSL   F+ + +  +        I  NI N +         Y R+  + +   ++V    
Sbjct: 1  MSLYDSFSISSSGMSAERLWLDIISNNIANLNTTRTAKGGPYKRQMPVFSQRLQSVVDSA 60

Query: 55 QRSENKNMFDKVLHAHS 71
          +        ++V+  ++
Sbjct: 61 KTRAGGVEVNRVVQDNA 77


>gi|30248323|ref|NP_840393.1| flagellar basal body rod protein FlgF [Nitrosomonas europaea ATCC
          19718]
 gi|30138209|emb|CAD84217.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC
          19718]
          Length = 247

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 26/91 (28%), Gaps = 6/91 (6%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
          +  +   A     +   Q A++  N+ NA    +  +       P     +  R+     
Sbjct: 1  MDRLIYTAMTGALHTMTQQATVSHNLANASTTGFRAQTDAFRAVPVYGESLPTRAFVLDS 60

Query: 59 --NKNMFDKVLHAHSSAIGQQRLLQSFEALK 87
              +     +   +  +        + A++
Sbjct: 61 TTGADFTPGAIQQTNRPLDVAVQGSGWIAVQ 91


>gi|313624695|gb|EFR94652.1| flagellar basal-body rod protein FlgC [Listeria innocua FSL J1-023]
          Length = 136

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISSDTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 122

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 123 NEKMME 128



 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 15/70 (21%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTMTT---------ISP 47
          +    N + +  N A Q       NI NAD+        ++R+  + +            
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSEITPFETALTGT 60

Query: 48 ENVTVVTQRS 57
            V V    S
Sbjct: 61 XGVKVSEISS 70


>gi|295696110|ref|YP_003589348.1| flagellar basal-body rod protein FlgB [Bacillus tusciae DSM 2912]
 gi|295411712|gb|ADG06204.1| flagellar basal-body rod protein FlgB [Bacillus tusciae DSM 2912]
          Length = 135

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            +  + +   I  N+ N D   Y R+D     
Sbjct: 15 ALDATALRQKLIADNVANVDTPGYHRQDVRFED 47


>gi|258622489|ref|ZP_05717511.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM573]
 gi|258585189|gb|EEW09916.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM573]
          Length = 243

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 62/255 (24%), Gaps = 22/255 (8%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYVR--RDTM----TTISPENVTV 52
           +  +   A +                  N+ NAD   +                 +  T+
Sbjct: 1   MDNLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERAESFQLYGSGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S         +      +    + + +  ++                   ++    
Sbjct: 57  VVTNSATTRFDSGDVIKTGRPLDVAIIGEGYLTVE------APQGGEAYTRAGNIKVDAF 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                    +LG++      E  +       +V  I      +IE  +  L+     +  
Sbjct: 111 GAMTINGFPVLGESGPMVLPEYQKIEIGERGQVSVIPPGGGAKIE--VGTLKLTKPPIDQ 168

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +         + +     +D+   L+ +  E   +S +    + M +  +    +     
Sbjct: 169 LQKESDSLLHNVNGEPFPVDETVQLVPEHVEGSNVSAVDELLSVMSLTRNFEMQVRMMKS 228

Query: 233 RDINFEKMNSYTVTS 247
            +   +  N      
Sbjct: 229 AETLAQAGNKLMAAG 243


>gi|222095367|ref|YP_002529427.1| flagellar basal body rod protein flgb [Bacillus cereus Q1]
 gi|221239425|gb|ACM12135.1| flagellar basal-body rod protein FlgB [Bacillus cereus Q1]
          Length = 172

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 57 NTVSSNIANANTPGYKAQDVTFAE 80


>gi|85710161|ref|ZP_01041226.1| flagellar proximal rod protein [Erythrobacter sp. NAP1]
 gi|85688871|gb|EAQ28875.1| flagellar proximal rod protein [Erythrobacter sp. NAP1]
          Length = 117

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46
          SQ+   I  NI NA    +  RD     +
Sbjct: 17 SQRMGVIASNIANAATPGFKARDMDFNAA 45


>gi|228964726|ref|ZP_04125833.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228794976|gb|EEM42475.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 152

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 37 NTVSSNIANANTPGYKAQDVTFAE 60


>gi|27363707|ref|NP_759235.1| flagellar basal body rod protein FlgC [Vibrio vulnificus CMCP6]
 gi|37679145|ref|NP_933754.1| flagellar basal body rod protein FlgC [Vibrio vulnificus YJ016]
 gi|320157111|ref|YP_004189490.1| flagellar basal-body rod protein FlgC [Vibrio vulnificus
          MO6-24/O]
 gi|27359823|gb|AAO08762.1| flagellar basal-body rod protein FlgC [Vibrio vulnificus CMCP6]
 gi|37197887|dbj|BAC93725.1| flagellar basal body rod protein FlgC [Vibrio vulnificus YJ016]
 gi|319932423|gb|ADV87287.1| flagellar basal-body rod protein FlgC [Vibrio vulnificus
          MO6-24/O]
          Length = 138

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51



 Score = 37.7 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   ++Y  + ++   + +ML   L+ 
Sbjct: 99  NVNVMEEMANMISASRAYQTNVQVADASKQMLLRTLQM 136


>gi|332187894|ref|ZP_08389627.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17]
 gi|332012055|gb|EGI54127.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17]
          Length = 251

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/221 (7%), Positives = 47/221 (21%), Gaps = 8/221 (3%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS---PENVTVVTQRSENKNMFD 64
             A     +     ++I  N+ NA    +     +               +    + + D
Sbjct: 6   YTAATGMRSHMAAQSAIANNMANASTIGFRADRVVFDRIDLKGGGAAFEARMPTAEEVTD 65

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
                 +       L  +       ++      +        L  +     +      + 
Sbjct: 66  ADRAPGTVQHTGNPLDVAIATSSAWLAVQAPDGSEAYTRRGDLEVTASGVLQTGDGYPVI 125

Query: 125 KTVIDNAEEVVQN-FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVN----DAIKF 179
                       +   +    V  I   A  + + ++ +  +             D +  
Sbjct: 126 GQNGPITVPPYNSLAVSPDGTVSIIPLGAGPDTQAQVIDRMKLADARVSQTVKGLDNLLR 185

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                    D          + S +    T+V    +   Y
Sbjct: 186 VKGGGALPQDMDATVQSGALEGSNVNMAQTLVDMIENQRSY 226



 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/179 (7%), Positives = 41/179 (22%), Gaps = 7/179 (3%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQY 344
               ++ +  R         +P+                   +    +G  E        
Sbjct: 58  PTAEEVTDADRAPGTVQHTGNPLDVAIATSSAWLAVQAPDGSEAYTRRGDLEVTASGVLQ 117

Query: 345 RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYA 404
             +   +           +N   ++    +      +               +  + +  
Sbjct: 118 TGDGYPVIGQNGPITVPPYNSLAVSPDGTVSIIPLGAGPDTQAQVIDRMKLADARVSQTV 177

Query: 405 RNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSY--NIS 461
           +     L      +       Q +   +         VN+ + L  +I+ ++SY    +
Sbjct: 178 KGLDNLLRVKGGGAL-----PQDMDATVQSGALEGSNVNMAQTLVDMIENQRSYEVQAN 231


>gi|292487937|ref|YP_003530812.1| flagellar basal-body rod protein FlgC [Erwinia amylovora
          CFBP1430]
 gi|292899156|ref|YP_003538525.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291199004|emb|CBJ46115.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291553359|emb|CBA20404.1| Flagellar basal-body rod protein flgC [Erwinia amylovora
          CFBP1430]
 gi|312172058|emb|CBX80315.1| Flagellar basal-body rod protein flgC [Erwinia amylovora ATCC
          BAA-2158]
          Length = 134

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          M+L ++F+ A +     SQ+      N+ NAD+        YV +  +   +    +   
Sbjct: 1  MALTSIFDIAGSAMAAQSQRLNVSASNLANADSATGPDGQPYVAKQVVFQTNAAPGSPTG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAEVIDD 70


>gi|90021854|ref|YP_527681.1| flagellar basal body rod protein FlgF [Saccharophagus degradans
           2-40]
 gi|89951454|gb|ABD81469.1| Flagellar basal-body rod FlgF [Saccharophagus degradans 2-40]
          Length = 249

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/149 (7%), Positives = 26/149 (17%), Gaps = 13/149 (8%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN--- 59
           +      A     +      +   N+ N +   +          P               
Sbjct: 1   MDKALYIAMTGAKHNMLAQTAHANNLANVNTTGFKADFAQARSMPIYYGEGEPTRAYALT 60

Query: 60  ----KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                N     L      +      + F A++                   L        
Sbjct: 61  ENPGTNFSQGALVETGRELDIAVEREGFIAVQ------APDGTEAFTRAGSLHIDSVGIL 114

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSARE 144
           +  +   +       A    +    +A  
Sbjct: 115 RTGNGLPVLGNGGPIALPPAEKIEMAADG 143



 Score = 37.3 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 18/52 (34%)

Query: 419 HDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            +           I   +     VN   EL  ++++ + Y +  K++    +
Sbjct: 185 ENDGEVQADGTVRIVSGFLEASNVNAVNELVSMLELSRQYEMQVKVMQTIKQ 236


>gi|312115251|ref|YP_004012847.1| flagellar basal-body rod protein FlgC [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311220380|gb|ADP71748.1| flagellar basal-body rod protein FlgC [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 139

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQ 55
          L A    A +  +  SQ+      N+ N+++         Y R+        +  T    
Sbjct: 6  LSASLAIAGSGLSAQSQRIRVATENLANSESTGKTPGALPYTRKILSFDQELDAATGAEL 65

Query: 56 RSENKNMFDKV 66
                  D+ 
Sbjct: 66 VIIGDVDADRS 76


>gi|255099438|ref|ZP_05328415.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-63q42]
 gi|255305296|ref|ZP_05349468.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC
           43255]
          Length = 257

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 61/236 (25%), Gaps = 9/236 (3%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
             +     V +    +  +G         +  + K++      +                
Sbjct: 14  TNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTKQKQIIGDISPGIS 73

Query: 297 L---IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +   I +F++      +++    +         D    Q  +         + +   +  
Sbjct: 74  MDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNFRTDNQGD--LITS 131

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G            +         +  + +     D  A    N+       N     + 
Sbjct: 132 EGYYVLGTNTATGAVGHINVGNQKFEVAKDNTISLDGNAMYKFNIVDFNNYNNLKKEGDN 191

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
             S    + + + +           +  V++  E++ ++ + + Y  + K+I   D
Sbjct: 192 LYSGGGAMKVNNALTIQS----AIESSNVDMVSEINNMMTISREYEANQKIIQAMD 243



 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRD 40
          ++     A +      Q+   +V N+ N D   Y  + 
Sbjct: 1  MIRGLYTAVSAMITNQQKQNVVVNNLANMDTNGYKSKQ 38


>gi|255598721|ref|XP_002537067.1| Flagellar basal-body rod protein flgC, putative [Ricinus communis]
 gi|223517602|gb|EEF25316.1| Flagellar basal-body rod protein flgC, putative [Ricinus communis]
          Length = 121

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE+  +I   ++Y  + + +     ML   L  
Sbjct: 82  NVNVTEEMVNMISASRAYQNNVETMNAAKTMLLKTLNI 119


>gi|254973935|ref|ZP_05270407.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-66c26]
 gi|255091321|ref|ZP_05320799.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP
           107932]
 gi|255312979|ref|ZP_05354562.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-76w55]
 gi|255515738|ref|ZP_05383414.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-97b34]
 gi|255648832|ref|ZP_05395734.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-37x79]
 gi|260682049|ref|YP_003213334.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196]
 gi|260685647|ref|YP_003216780.1| flagellar basal body rod protein FlgG [Clostridium difficile
           R20291]
 gi|306518946|ref|ZP_07405293.1| flagellar basal body rod protein FlgG [Clostridium difficile
           QCD-32g58]
 gi|260208212|emb|CBA60569.1| flagellar basal-body rod protein FlgG [Clostridium difficile CD196]
 gi|260211663|emb|CBE01931.1| flagellar basal-body rod protein FlgG [Clostridium difficile
           R20291]
          Length = 257

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 61/236 (25%), Gaps = 9/236 (3%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
             +     V +    +  +G         +  + K++      +                
Sbjct: 14  TNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTKQKQIIGDISPGIS 73

Query: 297 L---IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
           +   I +F++      +++    +         D    Q  +         + +   +  
Sbjct: 74  MDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNFRTDNQGD--LITS 131

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G            +         +  + +     D  A    N+       N     + 
Sbjct: 132 EGYYVLGTNTATGAVGHINVGNQKFEVAKDNTISLDGNAMYKFNIVDFNDYNNLKKEGDN 191

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469
             S    + + + +           +  V++  E++ ++ + + Y  + K+I   D
Sbjct: 192 LYSGGGAMKVNNALTIQS----AIESSNVDMVSEINNMMTISREYEANQKIIQAMD 243



 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 49/193 (25%), Gaps = 12/193 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           ++     A +      Q+   +V N+ N D   Y  +  +T               ++  
Sbjct: 1   MIRGLYTAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKS------------FDELK 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            +   +  +    +Q +      +    +  +          +K+  +++     L  D 
Sbjct: 49  LEGYNNYANGTKQKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDA 108

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
            G            +        +             + ++     +  V  D       
Sbjct: 109 AGNQFYTRNGNFRTDNQGDLITSEGYYVLGTNTATGAVGHINVGNQKFEVAKDNTISLDG 168

Query: 183 SKHDAHDFLDQRD 195
           +     + +D  D
Sbjct: 169 NAMYKFNIVDFND 181


>gi|84514835|ref|ZP_01002198.1| flagellar basal-body rod protein FlgC [Loktanella vestfoldensis
          SKA53]
 gi|84510994|gb|EAQ07448.1| flagellar basal-body rod protein FlgC [Loktanella vestfoldensis
          SKA53]
          Length = 139

 Score = 39.2 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN 33
          +  VF+ A         +  ++  NI NA+ 
Sbjct: 4  IKNVFDIAGRSMAAQMVRLNTVASNIANANT 34



 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 17/31 (54%)

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
           V++ EEL  +++  + Y  + +++     ++
Sbjct: 100 VDMNEELVDMLEASRQYQNNLEVLTTMRTLM 130


>gi|332533174|ref|ZP_08409043.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037456|gb|EGI73910.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 244

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/126 (10%), Positives = 29/126 (23%), Gaps = 12/126 (9%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENKN 61
             A +    + Q  A    N+ NA+   +       R                Q     N
Sbjct: 3   YIAASGAKQSLQGLALKANNLANANTTGFKADFAQARSMQAFGEGLPTRVFSMQERPGSN 62

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
           M    +      +       ++ A+++         N     +  L  + +         
Sbjct: 63  MVSGGIVQTGRDLDIAMSDNAWLAVQDA------SGNEAYTKVGTLNVTAQGMLVTSHGR 116

Query: 122 ILGKTV 127
            +    
Sbjct: 117 QVIGEG 122



 Score = 37.3 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
           G     R  ++     S  V   +         VN   E+  +I  ++ + +  KL+   
Sbjct: 173 GNDGLFRPKANVTVDTSANV--KVLSGSLEMSNVNPVHEMVDMISHQRQFELQVKLMKTA 230

Query: 469 DKM 471
           +++
Sbjct: 231 EEI 233


>gi|328470102|gb|EGF41013.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus
           10329]
          Length = 243

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 20/124 (16%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTV 52
           + ++   A +                  N+ NAD   +      VR   +     +  T+
Sbjct: 1   MDSLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERVRSVELQGPGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S +       +     A+    + + + A++          N        ++    
Sbjct: 57  VVTNSASTRFDSADVVKTGRALDVAVMGEGYLAVE------TPAGNEAYTRAGNIQIDTF 110

Query: 113 SYSK 116
               
Sbjct: 111 GAMS 114


>gi|332799170|ref|YP_004460669.1| flagellar basal-body rod protein FlgB [Tepidanaerobacter sp. Re1]
 gi|332696905|gb|AEE91362.1| flagellar basal-body rod protein FlgB [Tepidanaerobacter sp. Re1]
          Length = 134

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 7/22 (31%)

Query: 24 IVRNIENADNKNYVRRDTMTTI 45
          I  N+ N D   Y R       
Sbjct: 25 ISNNLANVDTPGYKRMGMSFEE 46


>gi|229058377|ref|ZP_04196761.1| Flagellar basal-body rod protein [Bacillus cereus AH603]
 gi|228719886|gb|EEL71476.1| Flagellar basal-body rod protein [Bacillus cereus AH603]
          Length = 161

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 46 NTVSSNIANANTPGYKAQDVTFAE 69


>gi|207108977|ref|ZP_03243139.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1]
          Length = 40

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNY 36
          +      A +          S+  NI N +   Y
Sbjct: 1  MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34


>gi|119469951|ref|ZP_01612756.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Alteromonadales bacterium TW-7]
 gi|119446661|gb|EAW27934.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
           [Alteromonadales bacterium TW-7]
          Length = 247

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 6/98 (6%)

Query: 8   NKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQRSENKN 61
             A +    + Q  A    N+ NA+   +       R          +     Q     N
Sbjct: 6   YIAASGAKQSLQGLALKANNLANANTTGFKSDFAQARSMQAFGEGLPSRVFSMQERPGSN 65

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
           M    +      +       ++ ++++    + +    
Sbjct: 66  MTSGGIVETGRDLDIAMSDNAWLSVQDASGNEAYTKVG 103



 Score = 36.5 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
           +         VN   E+  +I  ++ + +  KL+   + +
Sbjct: 197 VLSGTLEMSNVNPVHEMVDMISHQRQFELQVKLMKTAEDL 236


>gi|116872100|ref|YP_848881.1| flagellar basal body rod protein FlgC [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740978|emb|CAK20098.1| flagellar basal-body rod protein FlgC [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 136

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
           +  +  +      ++  +    N     Y N   V++  E++ L+  ++ Y  +   +  
Sbjct: 65  VSEISADTGSVKRVYDPTHPNAN--EAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQA 122

Query: 468 TDKMLQ 473
            +KM++
Sbjct: 123 NEKMME 128



 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTMTTI 45
          +    N + +  N A Q       NI NAD+        ++R+  + + 
Sbjct: 1  MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSE 49


>gi|92116937|ref|YP_576666.1| flagellar basal body rod protein FlgF [Nitrobacter hamburgensis
           X14]
 gi|91799831|gb|ABE62206.1| flagellar basal body rod protein [Nitrobacter hamburgensis X14]
          Length = 255

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 53/225 (23%), Gaps = 11/225 (4%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSENKNMFDKVLHA----HSS 72
           +Q   +  N+ N     Y    ++      P          + +  F +           
Sbjct: 17  RQMDVVANNVANVTTNGYKADRSLFEEYLMPGAHEDNFVGRDRRLSFVQDRATFHDFAGG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
              Q +         +                  L+ + +      S + +  +      
Sbjct: 77  PTEQTKNPLDVAIDGKAFLVVQTPAGERYTRDGGLQINAQGQLVTASGNPVLGSNGPITF 136

Query: 133 EVVQNFNTSARE-----VQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA 187
           +   +  T + +     ++ +   AD               +L      +    A     
Sbjct: 137 QQTDHDITISNDGTVTVLEGVNNAADSIRGKLRLVSFAQAQKLLKEGSNLYSAGAGNSAR 196

Query: 188 HDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
            D   +      + S +  ++ + R       YT   T L +   
Sbjct: 197 PDTSARVHQGFIEKSNVNAVTEMSRMVEVSRAYTQMATLLQQQSD 241


>gi|117919769|ref|YP_868961.1| flagellar basal body rod protein FlgB [Shewanella sp. ANA-3]
 gi|117612101|gb|ABK47555.1| flagellar basal-body rod protein FlgB [Shewanella sp. ANA-3]
          Length = 134

 Score = 39.2 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
                     I  NI NAD  +Y  RD   + +        Q+  +
Sbjct: 17 GIRAERA--EVISSNIANADTPHYKARDVDFSAALNIAKTQQQQRNS 61


>gi|330863344|emb|CBX73467.1| hypothetical protein YEW_ES20620 [Yersinia enterocolitica W22703]
          Length = 153

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 361 FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
              + K+  G    ++      +K      +     +    + +   +G +    S++  
Sbjct: 50  GFSDNKDNVGNATNLHKLLALKDKTITITGL----GSTKFSDASTALVGKVAFASSNNQQ 105

Query: 421 LHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
              +++ V N    +  +  GV+  EE + + +V+QS
Sbjct: 106 SITRTKNVLNSAILNRDSLSGVDSDEEGNNIFRVQQS 142


>gi|218778847|ref|YP_002430165.1| hypothetical protein Dalk_0994 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760231|gb|ACL02697.1| Putative Flagellar basal-body rod protein FlgG or FlgF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/102 (9%), Positives = 21/102 (20%), Gaps = 14/102 (13%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
             I  N+ N     + R             +      +    +  +      +       
Sbjct: 20  EVISNNLANVSTPGFKR------------DIYALDKNSNPYTETDM--SEGPVQHTGNEL 65

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
            F    E        N        +   + +    N + D L
Sbjct: 66  DFSIQGEGFFEMLGENGLRYTRQGRFLLNADKEIVNAAGDKL 107


>gi|39936948|ref|NP_949224.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          CGA009]
 gi|192292776|ref|YP_001993381.1| flagellar basal body rod protein FlgC [Rhodopseudomonas palustris
          TIE-1]
 gi|39650805|emb|CAE29328.1| flagellar basal-body rod protein flgC [Rhodopseudomonas palustris
          CGA009]
 gi|192286525|gb|ACF02906.1| flagellar basal-body rod protein FlgC [Rhodopseudomonas palustris
          TIE-1]
          Length = 141

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIEN----ADNKN---YVRRDTMTTIS 46
              A +     + +   I  N+ N    A N     Y R+    T +
Sbjct: 11 SMGIATSGLRAQAGRMRVISENVANADSTAQNPGGDPYRRKVPTFTSA 58


>gi|262276420|ref|ZP_06054229.1| flagellar basal-body rod protein FlgB [Grimontia hollisae CIP
           101886]
 gi|262220228|gb|EEY71544.1| flagellar basal-body rod protein FlgB [Grimontia hollisae CIP
           101886]
          Length = 131

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 8/119 (6%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSS 72
                     ++  N+ NA+   Y  +D     + +  T         N      +    
Sbjct: 17  GVRAQRA--ETLASNLANANTPGYKAQDVDFEQALQAATSGA------NFGLSRTNERHI 68

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
               Q   Q    +       D          +    +   Y  +L         +  A
Sbjct: 69  PASSQITGQKMYRIPNQPDTGDGNTVDAQVERNLFMQNALEYQASLDFLGSKFKNMSKA 127


>gi|259908814|ref|YP_002649170.1| flagellar basal body rod protein FlgC [Erwinia pyrifoliae Ep1/96]
 gi|224964436|emb|CAX55945.1| Cell-proximal portion of basal-body rod [Erwinia pyrifoliae
          Ep1/96]
 gi|283478796|emb|CAY74712.1| Flagellar basal-body rod protein flgC [Erwinia pyrifoliae DSM
          12163]
 gi|310767288|gb|ADP12238.1| flagellar basal body rod protein FlgC [Erwinia sp. Ejp617]
          Length = 134

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          M+L  +F+ A +     SQ+      N+ NAD+        YV +  +   +    +   
Sbjct: 1  MALTRIFDIAGSAMAAQSQRLNVSASNLANADSVTGPDGQPYVAKQVVFQTNAAPGSPTG 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVRVAEVIND 70


>gi|149375033|ref|ZP_01892806.1| Flagellar basal body rod protein [Marinobacter algicola DG893]
 gi|149360922|gb|EDM49373.1| Flagellar basal body rod protein [Marinobacter algicola DG893]
          Length = 250

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/137 (5%), Positives = 27/137 (19%), Gaps = 16/137 (11%)

Query: 3   LLAVFNKAQNICNNASQQFA--SIVRNIENADNKNYV------RRDTMTTISPENVTVVT 54
           +        +         +  +   N+ N     +       R   +            
Sbjct: 1   MDKALYLGMSG--AKQNMLSQRAHANNLANVSTTGFKADFAQARSMPVFGEHHPTRAYAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 ++    L      +        + A++                   ++  +   
Sbjct: 59  AERPGTDLSAGALMDTGRKLDVAVEGDGWLAVQNQ------QGEEVFTRSGSMQIDVNGL 112

Query: 115 SKNLSEDILGKTVIDNA 131
            +  S +++       A
Sbjct: 113 MRLSSGEMVMGNGGPVA 129


>gi|123444231|ref|YP_001008199.1| putative autotransporter protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122091192|emb|CAL14075.1| putative autotransporter protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1081

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/413 (6%), Positives = 83/413 (20%), Gaps = 9/413 (2%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS-----ADDH 95
           T+ + S  +   ++     K   +      S        L    +     +         
Sbjct: 150 TVISTSGSSAYGISGAGGAKLTVNNTTLNASGGGSYGIYLSDIGSALSGANNTINNTSSA 209

Query: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
                      +  +L++ + N++    G +V  ++   +     +    Q         
Sbjct: 210 SGTGVYIGNGGINATLDNTTINMTNGYAGVSVGRDSTITMDGLTATGNMNQVFDITGSAT 269

Query: 156 IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
           +     +L        + N +        ++ +      +  +   +    ++    + +
Sbjct: 270 VSNANIDLASGAVLRAMGNSSTNKAVIILNNINAISHSGNATMVNANMNADVTINGGSYH 329

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
               Y              +        T    +  I   G     +            +
Sbjct: 330 SKGTYAMG--IWVPDTTSSVKVNNAEFITEGDGATAIENRGTATVDSTVVRTSGNSSHGI 387

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                            +  +   +    +     +           +           +
Sbjct: 388 YSESIFNATNMSISTAGVGSIGATAARGGNLNLAGATINTTGASGMVLGTFIGSSINAKN 447

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            T                     K        +             ++K  + +      
Sbjct: 448 ITATSTGASAYALWTQTSSSIALKDSQITTSGVNAGGIYAAGSNAVYSKVMLDNSQVVSE 507

Query: 396 TNVTLLEYARNSIGWLEKNRS--DSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +  Y  N    +         + L + +      ++   +    VNL  
Sbjct: 508 NGAGVRAYGANINIDVNNGSQLIGGNGLLVNASTNVGTLASPLNIISNVNLNA 560


>gi|254438373|ref|ZP_05051867.1| flagellar basal-body rod protein FlgC [Octadecabacter antarcticus
          307]
 gi|198253819|gb|EDY78133.1| flagellar basal-body rod protein FlgC [Octadecabacter antarcticus
          307]
          Length = 138

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MS L  VF+ A         +  ++  NI NA+
Sbjct: 1  MSDLKNVFDIAGRSMAAQMVRLNTVASNIANAN 33



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 3/37 (8%), Positives = 18/37 (48%)

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
           V++ EE+  +++  + +  + +++     ++   +  
Sbjct: 100 VDVNEEMVDMLEASRQFQNNLEVVTTMRTLMLRTVNM 136


>gi|118444436|ref|YP_877973.1| flagellar basal body rod protein FlgC [Clostridium novyi NT]
 gi|118134892|gb|ABK61936.1| flagellar basal-body rod protein FlgC [Clostridium novyi NT]
          Length = 145

 Score = 38.9 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+  +    + +       +  +I  NI N    
Sbjct: 1  MNAFSSMRISASGLAAERLRMDTISSNITNFKTT 34



 Score = 36.9 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
              Y     VN+  E++ +I   ++Y  +   I  +  M    LE  +
Sbjct: 98  ENGYVLMPNVNILNEMADMIAATRAYEANVTAINSSKNMFMKALEIGR 145


>gi|295706287|ref|YP_003599362.1| flagellar basal-body rod protein FlgC [Bacillus megaterium DSM
          319]
 gi|294803946|gb|ADF41012.1| flagellar basal-body rod protein FlgC [Bacillus megaterium DSM
          319]
          Length = 149

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 10/55 (18%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N---------YVRRDTMTTI 45
          M++    N   +       +   +  N+ NA+             Y R+  +   
Sbjct: 1  MTIFQNMNITSSALTANRLRMDVVSSNMANAETTRGTYVNGEWQPYKRKMVVMQS 55


>gi|91792661|ref|YP_562312.1| flagellar basal body rod protein FlgB [Shewanella denitrificans
          OS217]
 gi|91714663|gb|ABE54589.1| flagellar basal-body rod protein FlgB [Shewanella denitrificans
          OS217]
          Length = 132

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
          SQ+   +  NI NA+  +Y  +D     + ++  
Sbjct: 20 SQRAEVLSSNIANANTPHYKAQDVDFASAMQSAR 53


>gi|309388815|gb|ADO76695.1| flagellar basal-body rod protein FlgC [Halanaerobium praevalens
          DSM 2228]
          Length = 143

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          +    + + +       +  +I  NI NA+  
Sbjct: 1  MFKGIDISASGLTAQRLRMDTISSNIANAETT 32



 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            E Y     V++  E+  +I   ++Y  + + I     M  + L  
Sbjct: 96  EEGYVELPNVSVMTEMVNMIDASRAYEANTQAISNYKSMANSALNI 141


>gi|299822287|ref|ZP_07054173.1| flagellar basal-body rod protein FlgC [Listeria grayi DSM 20601]
 gi|299815816|gb|EFI83054.1| flagellar basal-body rod protein FlgC [Listeria grayi DSM 20601]
          Length = 136

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 12/71 (16%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN---KN---YVRRDTM------TTISPENV 50
          +    N   +  N A         NI NA++        Y R+  +             V
Sbjct: 1  MFESINTNGSALNAAKTWMEISSDNIANANSSAAPGEAPYARKSVVLQEISPFEAKLNGV 60

Query: 51 TVVTQRSENKN 61
            V   +   +
Sbjct: 61 NGVKVENIVSD 71


>gi|225181614|ref|ZP_03735055.1| flagellar basal-body rod protein FlgB [Dethiobacter alkaliphilus
          AHT 1]
 gi|225167722|gb|EEG76532.1| flagellar basal-body rod protein FlgB [Dethiobacter alkaliphilus
          AHT 1]
          Length = 137

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 13/32 (40%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
            + A ++   +  N+ N +   + R+D    
Sbjct: 16 GLDAAGERNRVMAHNVANVNTPMFKRQDVSFE 47


>gi|196045154|ref|ZP_03112387.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB108]
 gi|196024156|gb|EDX62830.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB108]
          Length = 249

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/214 (7%), Positives = 56/214 (26%), Gaps = 8/214 (3%)

Query: 260 SSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319
                     G +  +  +  +VVP   +       + + + +    +   +      F+
Sbjct: 36  DVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGTAGTASFFV 95

Query: 320 ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYC 379
                +         +       Q  S    + +     +        +     L +   
Sbjct: 96  TSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVT 155

Query: 380 DSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439
            +         V     N  +    ++           +         +   +       
Sbjct: 156 QNNIARLQTKTVGAEANNRLIQRENKSF-----TLAEGNIADLPNGTGL---VKNHMLEN 207

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
             V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 208 SNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 241



 Score = 37.3 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTIGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +SA      L    A           N +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +     A     I    +      +   ++   
Sbjct: 120 TTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 221


>gi|329901231|ref|ZP_08272756.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549163|gb|EGF33755.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 245

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 32/129 (24%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS----- 57
           +  +   A     +  +Q ++   N+ NA    +  +       P     +  R+     
Sbjct: 1   MDRMIYTAMTGAKHVMEQQSTTANNLANATTTGFRAQLDTFRAVPVQGPGLATRAFVVDS 60

Query: 58  -ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     L     A+      + + A+      D             L+ +     +
Sbjct: 61  TVGADFSQGALQQTGRALDVAIQGKGWLAV------DMPDGTEAYTRHGSLKVNENGLLQ 114

Query: 117 NLSEDILGK 125
                 +  
Sbjct: 115 TQGGLNIVG 123


>gi|226225712|ref|YP_002759818.1| flagellar basal-body rod protein FlgF [Gemmatimonas aurantiaca
           T-27]
 gi|226088903|dbj|BAH37348.1| flagellar basal-body rod protein FlgF [Gemmatimonas aurantiaca
           T-27]
          Length = 234

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/110 (8%), Positives = 29/110 (26%), Gaps = 3/110 (2%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
               + A +      ++   +  N+ NA  + +   +T       N       + +  + 
Sbjct: 7   NNGLSSAASALQMLERKQQVLANNLANASTRGFK-AETTFARMMGNQLAKADTAID--LT 63

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
              L    +++        F  +          N +     ++     + 
Sbjct: 64  PGTLTETHNSLDLALEGDGFFVVDTPAGERFVRNGNFRLDANRHLTDEQG 113


>gi|222147565|ref|YP_002548522.1| flagellar basal body rod protein FlgF [Agrobacterium vitis S4]
 gi|221734553|gb|ACM35516.1| flagellar basal body rod protein [Agrobacterium vitis S4]
          Length = 244

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 43/156 (27%), Gaps = 8/156 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56
           + +    + +      ++  +I  N+ N +   +   +             +N  +    
Sbjct: 1   MQSGMYVSLSSQRALDKRLTTIADNMANVNTVGFRGTEVKFDEVVSRTGNDQNAKIAFVS 60

Query: 57  SENKNMFDKV--LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             N  +  +   +      +       ++ ++          +   T   +    S+  Y
Sbjct: 61  QGNDYLNTQSGEMLQTGGTLDFAVKGDAWFSIDTPAGPALTRDGRFTMTSTGQLVSVRGY 120

Query: 115 SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
           S   +     +   +  E  V    T  +  ++I  
Sbjct: 121 SVLDAGGGPIQLDPNGGEPHVGADGTINQNGRQISQ 156


>gi|297584032|ref|YP_003699812.1| flagellar basal-body rod protein FlgB [Bacillus selenitireducens
          MLS10]
 gi|297142489|gb|ADH99246.1| flagellar basal-body rod protein FlgB [Bacillus selenitireducens
          MLS10]
          Length = 134

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
             N ++++  +I  N+ N D  NY  + T+  
Sbjct: 14 TSLNASARRQDTISDNVANVDTPNYKAKKTVFN 46


>gi|149189834|ref|ZP_01868114.1| flagellar basal body rod protein [Vibrio shilonii AK1]
 gi|148836320|gb|EDL53277.1| flagellar basal body rod protein [Vibrio shilonii AK1]
          Length = 144

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTISPENVTVVT 54
           MS   +++ A +     + +  ++  N+ NAD      +  Y     +         +  
Sbjct: 1   MSFTDIYSIAGSAMTAQTVRLNTVASNLANADAVSANPDDAYKALKPVFATVYSQTQLAA 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            ++   N   +++    S     +  +    L        +        ++ +  +  S+
Sbjct: 61  GQNVYPNAEVRIVDVVQSDAKADQRFEPNNPLANEEGYVYYPGVDVVAEMADMMSATRSF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|134297200|ref|YP_001120935.1| flagellar basal body rod protein FlgC [Burkholderia vietnamiensis
          G4]
 gi|134140357|gb|ABO56100.1| flagellar basal-body rod protein FlgC [Burkholderia vietnamiensis
          G4]
          Length = 141

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +    P   
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPLGG 57


>gi|317492430|ref|ZP_07950859.1| flagellar basal-body rod protein FlgC [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316919769|gb|EFV41099.1| flagellar basal-body rod protein FlgC [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 134

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MS+L +F+ + +     SQ+      N+ NAD
Sbjct: 1  MSMLNIFDISGSALAAQSQRMNVAASNMANAD 32


>gi|296330833|ref|ZP_06873308.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305674351|ref|YP_003866023.1| flagellar component of cell-proximal portion of basal-body rod
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151838|gb|EFG92712.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305412595|gb|ADM37714.1| flagellar component of cell-proximal portion of basal-body rod
          [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 150

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+     N + +       +   +  N+ N D  
Sbjct: 1  MTAFHSLNVSASALTAQRVRMDVVSSNLANMDTT 34


>gi|148976392|ref|ZP_01813098.1| flagellar basal-body rod protein C [Vibrionales bacterium SWAT-3]
 gi|145964215|gb|EDK29471.1| flagellar basal-body rod protein C [Vibrionales bacterium SWAT-3]
          Length = 137

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+      + Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKETYKARHAVFGA 51



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
             VN+ EE++ +I   ++Y  + ++   + +ML   L+ 
Sbjct: 97  SNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 135


>gi|227546428|ref|ZP_03976477.1| endo-1,4-beta-xylanase D [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213085|gb|EEI80964.1| endo-1,4-beta-xylanase D [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 823

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/336 (8%), Positives = 84/336 (25%), Gaps = 2/336 (0%)

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
              KN S          +A   + +        Q +  +      L+ ++  R      +
Sbjct: 458 EILKNPSTYFGVGGNNHHAMVQLGDQWYMTYHAQTVAKELMNGGNLDAAHGYRNTHLDPI 517

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
             +                  +++   +   I   +    +        + G  + +   
Sbjct: 518 TVNEDGSIADIAMTYEGLSSVKNLDAYQDGGIPASTIAWDSGIQNAYDLTSGVRVVDMTT 577

Query: 233 RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDE 292
            +   +K+++      ++   +D     ++  +    GK   +L+IR             
Sbjct: 578 DNSEGQKLSNINNGEWTSLANVDFGNNGASSLTVTAAGKAGGILEIRLDDPDSEPVASIS 637

Query: 293 MARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ-GISETICVNPQYRSNPSFL 351
           +       +++          V  +  +       N   +     T          PS  
Sbjct: 638 IPAGDGSEYADYTTTLEGVTGVHHVVFSFKSDGGANAQDELYDITTYTFTESQDETPSTP 697

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLLEYARNSIGW 410
            D   +      N    A      +    +         +   +     + +        
Sbjct: 698 VDKSDLQSAVNENSGLNASDYTEESWKVFADALQKAQAVLQDESATEQQVQDALAALNSA 757

Query: 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
               +         +    ++ S++  +T GV+L +
Sbjct: 758 RAGLKLADDSTDGNADGSNDNASDAVDDTDGVDLAQ 793


>gi|331007438|ref|ZP_08330615.1| Flagellar basal-body rod protein flgF [gamma proteobacterium
           IMCC1989]
 gi|330418745|gb|EGG93234.1| Flagellar basal-body rod protein flgF [gamma proteobacterium
           IMCC1989]
          Length = 246

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 28/137 (20%), Gaps = 15/137 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT-------- 54
           +      A     N     A    N+ NA+   + R D     S                
Sbjct: 1   MDKALYIAMTSAKNNMLGQAIRSNNLANANTTGF-RSDFEQARSMGVYYGEGLPTRAFAL 59

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             +   N  +  L      +      + F A++                   L       
Sbjct: 60  TETPQTNFAEGALIQTGRDLDVAVKGRGFIAVQ------AADGREAYTRAGSLYVDSAGV 113

Query: 115 SKNLSEDILGKTVIDNA 131
            +  +   +       A
Sbjct: 114 LRTGNNLPVMGNAGPMA 130


>gi|283782090|ref|YP_003372845.1| flagellar basal-body rod protein FlgC [Pirellula staleyi DSM
          6068]
 gi|283440543|gb|ADB18985.1| flagellar basal-body rod protein FlgC [Pirellula staleyi DSM
          6068]
          Length = 141

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 3/28 (10%), Positives = 10/28 (35%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIEN 30
          +    + + +       +  +I  N+ N
Sbjct: 1  MHTALDISTSALVAQRIRLDTISSNLAN 28


>gi|90577345|ref|ZP_01233156.1| putative flagellar basal-body rod protein [Vibrio angustum S14]
 gi|90440431|gb|EAS65611.1| putative flagellar basal-body rod protein [Vibrio angustum S14]
          Length = 243

 Score = 38.9 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 9/239 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + +    A +  +   +       N+ NAD   +      V+   +     +  T+V   
Sbjct: 1   MDSFLYTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVKSIPLQGAGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S         +     A+        F  ++ +   + +          +    +  +  
Sbjct: 61  SAATRFDAGDVIKTGRALDIAINGDGFFTVQTIAGNEAYTRTGNIRVDEQGMMRVNGFPL 120

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
               + L      N E   +   +    +         +++L   +  +   +   +   
Sbjct: 121 MSEGEALVLPEYQNVEISDKGVVSIV-PLGGGAELEVGQLKLVNPDFNQLQKQSDGLLHP 179

Query: 177 IKFKTASKHDAHDFLDQR--DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR 233
           +  +  ++  +            +  I+E++ + ++ RN    V       TL +   R
Sbjct: 180 VNDQVFAQDPSVAMTAGHLEGSNVSAINELVSVMSLTRNFEMQVRMMKTAETLAQAGTR 238


>gi|28897550|ref|NP_797155.1| flagellar basal body rod protein FlgC [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|153839687|ref|ZP_01992354.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          AQ3810]
 gi|260364609|ref|ZP_05777211.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          K5030]
 gi|260878286|ref|ZP_05890641.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          AN-5034]
 gi|260898116|ref|ZP_05906612.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          Peru-466]
 gi|260901951|ref|ZP_05910346.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          AQ4037]
 gi|5361006|gb|AAD42913.1|U12817_7 polar flagellar FlgC homolog [Vibrio parahaemolyticus]
 gi|28805762|dbj|BAC59039.1| polar flagellar FlgC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746797|gb|EDM57785.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          AQ3810]
 gi|308086105|gb|EFO35800.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          Peru-466]
 gi|308090161|gb|EFO39856.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          AN-5034]
 gi|308106781|gb|EFO44321.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          AQ4037]
 gi|308115115|gb|EFO52655.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus
          K5030]
 gi|328473455|gb|EGF44303.1| flagellar basal body rod protein FlgC [Vibrio parahaemolyticus
          10329]
          Length = 137

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51


>gi|89072314|ref|ZP_01158893.1| putative flagellar basal-body rod protein [Photobacterium sp.
           SKA34]
 gi|89051846|gb|EAR57298.1| putative flagellar basal-body rod protein [Photobacterium sp.
           SKA34]
          Length = 243

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 34/127 (26%), Gaps = 6/127 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + +    A +  +   +       N+ NAD   +      V+   +     +  T+V   
Sbjct: 1   MDSFLYTATSGASRVMKAQHVRSNNLSNADTAGFRADMERVKSIPLQGAGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S         +     A+        F  ++ +   + +          +    +  +  
Sbjct: 61  SAATRFDAGDVIKTGRALDIAINGDGFFTVQTVAGNEAYTRAGNIRVDDQGMMRVNGFPL 120

Query: 117 NLSEDIL 123
               + L
Sbjct: 121 MSEGEAL 127


>gi|85712251|ref|ZP_01043302.1| Flagellar basal body protein [Idiomarina baltica OS145]
 gi|85693878|gb|EAQ31825.1| Flagellar basal body protein [Idiomarina baltica OS145]
          Length = 134

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSS 72
                 +   I  NI NAD   Y  +      +        Q        +K      S
Sbjct: 17 GIRTQRAEL--IANNIANADTPGYKAKGLDFQQALAQAQRGIQSHSLARTHEKHFSVEIS 74

Query: 73 AIGQQRLL 80
            GQ++  
Sbjct: 75 PQGQEKFR 82


>gi|16078682|ref|NP_389501.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221309494|ref|ZP_03591341.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221313819|ref|ZP_03595624.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221318743|ref|ZP_03600037.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323014|ref|ZP_03604308.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|321315385|ref|YP_004207672.1| flagellar basal body rod protein FlgC [Bacillus subtilis BSn5]
 gi|120294|sp|P24501|FLGC_BACSU RecName: Full=Flagellar basal-body rod protein flgC
 gi|142916|gb|AAA22442.1| flgC [Bacillus subtilis]
 gi|2633991|emb|CAB13492.1| flagellar component of cell-proximal portion of basal-body rod
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021659|gb|ADV96645.1| flagellar basal body rod protein FlgC [Bacillus subtilis BSn5]
          Length = 150

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+     N + +       +   +  N+ N D  
Sbjct: 1  MTAFHSLNVSASALTAQRVRMDVVSSNLANMDTT 34


>gi|332294890|ref|YP_004436813.1| flagellar basal-body rod protein FlgB [Thermodesulfobium
          narugense DSM 14796]
 gi|332177993|gb|AEE13682.1| flagellar basal-body rod protein FlgB [Thermodesulfobium
          narugense DSM 14796]
          Length = 134

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT 43
            +     +      +    + +NI NAD   Y   D   
Sbjct: 8  FKILGFGLSG--AYKRN-EVLAQNIANADTPGYKSYDINF 44


>gi|329667912|gb|AEB93860.1| hypothetical protein LJP_1541c [Lactobacillus johnsonii DPC 6026]
          Length = 1218

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/445 (7%), Positives = 103/445 (23%), Gaps = 41/445 (9%)

Query: 40  DTMTTISPENVTVVTQRS--ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN 97
           D     S       + +    +  +       +++  G   L    + +        +  
Sbjct: 449 DVKFASSVTEPNGKSIKRLYVDNQLGTVNSGVNTARNGLGTLSNGSKQITNGAVQLQNGA 508

Query: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIE 157
           N  ++   +L+   +  +   +       + + AE +       A    ++ +      +
Sbjct: 509 NQLSNGTGRLQAGADQLASGTT------RLQNGAEALRSGTMRLATGAGRLESGTLNLQQ 562

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDM 217
             +      +              + ++     ++  + +  ++S  +  S      + +
Sbjct: 563 GAVQLENGTIKLANGAASLQSGTQSLQNGTQALVNGLNTMSAQLSGQMN-SATKAQLDAL 621

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
                      + + + +     +  T   ++N   +     +           +K L  
Sbjct: 622 QKGLPQINNGIQRLNQALGQSSSSVDTAGLKANLTDVGTQAKTIGDNLTQAGNTLKGLQS 681

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
               +    + +L +     + S    D             +         K     S  
Sbjct: 682 SGAGLSDSEKAELTQAYAQAMDSAKLNDQQKQAMSAAFSQILGKVESASTQKTQNLTSSL 741

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
             V    ++     +  G  +      ++ L G    +++     N        A     
Sbjct: 742 QSVAGNIQAAGEADKKLGESANNVGNTLQTLQGLMGQVDNLKQQVNTLATASNTALPGAT 801

Query: 398 VTLLEYARNSI---------------------------GWLEKNRSDSHDLHMKSQVVFN 430
             L + +                               G L            +      
Sbjct: 802 TALNQLSSGLTQVQGAVAQGAAGASRLNEGAARLNSGAGQLASGLQAGVAGSSQLANGAG 861

Query: 431 HISESYSN-----TVGVNLQEELSF 450
            ++            G+N   +L+ 
Sbjct: 862 QLANGAGQLNTGLQSGLNGTNQLAN 886


>gi|325295411|ref|YP_004281925.1| flagellar basal-body rod protein FlgC [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325065859|gb|ADY73866.1| flagellar basal-body rod protein FlgC [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 135

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 5/49 (10%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-----YVRRDTMTTIS 46
          +      +         +      N+ NA++ +     Y R+  +    
Sbjct: 2  IFKGLEVSLTGMEVQRVRIDIHSSNLANANSVDENGNPYRRKIPIFESV 50


>gi|91785636|ref|YP_560842.1| flagellar basal body rod protein FlgC [Burkholderia xenovorans
          LB400]
 gi|296157458|ref|ZP_06840293.1| flagellar basal-body rod protein FlgC [Burkholderia sp. Ch1-1]
 gi|91689590|gb|ABE32790.1| Flagellar basal-body rod protein FlgC [Burkholderia xenovorans
          LB400]
 gi|295892230|gb|EFG72013.1| flagellar basal-body rod protein FlgC [Burkholderia sp. Ch1-1]
          Length = 141

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NA          Y  +  +  +SP   
Sbjct: 3  SLMNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVFAVSPLGG 57


>gi|323341389|ref|ZP_08081633.1| flagellar basal-body rod protein FlgB [Lactobacillus ruminis ATCC
          25644]
 gi|323091266|gb|EFZ33894.1| flagellar basal-body rod protein FlgB [Lactobacillus ruminis ATCC
          25644]
          Length = 121

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +   + +  +   I  NI N +  NY  +  +   
Sbjct: 8  KTAMDVSQTRSELISNNIANVNTPNYKAKRVVFES 42


>gi|254358602|ref|ZP_04974875.1| putative outer membrane protein [Burkholderia mallei 2002721280]
 gi|148027729|gb|EDK85750.1| putative outer membrane protein [Burkholderia mallei 2002721280]
          Length = 1045

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/437 (6%), Positives = 77/437 (17%), Gaps = 3/437 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 275 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 331

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 332 SKSAITLGGAGVATPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 391

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 392 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 451

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 452 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 511

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S           +N  +                            +     + 
Sbjct: 512 STANGTNSTASGDSSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 571

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 572 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 631

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            D+   +       G N+  T  +   +         + +   
Sbjct: 632 TASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGANSTASG 691

Query: 422 HMKSQVVFNHISESYSN 438
              +    N  +   ++
Sbjct: 692 DNSTASGTNASATGENS 708


>gi|257866376|ref|ZP_05646029.1| flagellar basal body rod protein FlgC [Enterococcus casseliflavus
          EC30]
 gi|257871287|ref|ZP_05650940.1| flagellar basal body rod protein FlgC [Enterococcus gallinarum
          EG2]
 gi|257873108|ref|ZP_05652761.1| flagellar basal body rod protein FlgC [Enterococcus casseliflavus
          EC10]
 gi|257875989|ref|ZP_05655642.1| flagellar basal body rod protein FlgC [Enterococcus casseliflavus
          EC20]
 gi|257800334|gb|EEV29362.1| flagellar basal body rod protein FlgC [Enterococcus casseliflavus
          EC30]
 gi|257805451|gb|EEV34273.1| flagellar basal body rod protein FlgC [Enterococcus gallinarum
          EG2]
 gi|257807272|gb|EEV36094.1| flagellar basal body rod protein FlgC [Enterococcus casseliflavus
          EC10]
 gi|257810155|gb|EEV38975.1| flagellar basal body rod protein FlgC [Enterococcus casseliflavus
          EC20]
          Length = 138

 Score = 38.9 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 10/33 (30%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          M +        +       +  +I  NI N + 
Sbjct: 1  MGMFNGLTINASGLALERLKLDTISSNIANVNT 33


>gi|327480021|gb|AEA83331.1| flagellar basal body rod protein FlgF [Pseudomonas stutzeri DSM
           4166]
          Length = 246

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/164 (9%), Positives = 36/164 (21%), Gaps = 13/164 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSENK 60
              A    +  ++   +   N+ N     +       R   +   S              
Sbjct: 5   LYVAMTGASQNARAQQAHANNLANISTTGFRRDFEQARSMQVFGDSHPARVYAMSERPGT 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     L      +      Q + A++          +        L   +    +    
Sbjct: 65  DFTPGTLQETGRDLDVAVEGQGWIAVQ------APDGSEAYVRTGSLNIDVLGMLRTADG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNL 163
             +       A    +  +        IRA   D  I + +  +
Sbjct: 119 MPVMGNGGPIAIPPEEKVDVGHDGTISIRALGEDPNIVVTVDRI 162


>gi|258625233|ref|ZP_05720145.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM603]
 gi|258582480|gb|EEW07317.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM603]
          Length = 243

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 63/255 (24%), Gaps = 22/255 (8%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYVR--RDTMT----TISPENVTV 52
           +  +   A +                  N+ NAD   +        +        +  T+
Sbjct: 1   MDNLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERAESFQLHGAGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S         +      +    + + +  ++                   ++    
Sbjct: 57  VVTNSATTRFDSGDVIKTGRPLDVAIIGEGYLTVE------APQGGEAYTRAGNIKVDAF 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTV 172
                    +LG++      E  +       +V  I      +IE  +  L+     +  
Sbjct: 111 GAMTINGFPVLGESGPMVLPEYQKIEIGERGQVSVIPPGGGAKIE--VGTLKLTKPPIDQ 168

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           +         + +     +D+   L+ +  E   +S +    + M +  +    +     
Sbjct: 169 LQKESDSLLHNVNGEPFPVDETVQLVPEHVEGSNVSAVDELLSVMSLTRNFEMQVRMMKS 228

Query: 233 RDINFEKMNSYTVTS 247
            +   +  N      
Sbjct: 229 AETLAQAGNKLMAAG 243


>gi|253998490|ref|YP_003050553.1| flagellar basal-body rod protein FlgC [Methylovorus sp. SIP3-4]
 gi|313200565|ref|YP_004039223.1| flagellar basal-body rod protein flgc [Methylovorus sp. MP688]
 gi|253985169|gb|ACT50026.1| flagellar basal-body rod protein FlgC [Methylovorus sp. SIP3-4]
 gi|312439881|gb|ADQ83987.1| flagellar basal-body rod protein FlgC [Methylovorus sp. MP688]
          Length = 134

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          MSL  VFN + +  +  SQ+  ++  N+ NAD+        Y  +  + + +P N   V+
Sbjct: 1  MSLFNVFNVSGSAMSAQSQRLNAVASNLANADSATSANGQPYKAKQVVFSATPTNNAAVS 60

Query: 55 QRSENKNMFD 64
               + + D
Sbjct: 61 GVKVQQVIED 70


>gi|298530765|ref|ZP_07018167.1| protein of unknown function DUF1078 domain protein
          [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510139|gb|EFI34043.1| protein of unknown function DUF1078 domain protein
          [Desulfonatronospira thiodismutans ASO3-1]
          Length = 124

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 4/60 (6%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 10 AQNICNNASQ---QFASIVRNIENADNKNYVRRDTMTTISP--ENVTVVTQRSENKNMFD 64
          + +          +  +   N+ N + + +     +   +P  + V  ++         +
Sbjct: 4  SISGMGAFQSFGLRQQASAHNVANVNTRGFEPSRVVLEEAPEHQGVRPLSVEKVRDQALE 63


>gi|262394941|ref|YP_003286795.1| flagellar basal-body rod protein FlgC [Vibrio sp. Ex25]
 gi|262338535|gb|ACY52330.1| flagellar basal-body rod protein FlgC [Vibrio sp. Ex25]
          Length = 137

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51


>gi|268680165|ref|YP_003304596.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM
          6946]
 gi|268618196|gb|ACZ12561.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM
          6946]
          Length = 267

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 1/36 (2%)

Query: 11 QNICNNAS-QQFASIVRNIENADNKNYVRRDTMTTI 45
                    +   I  N+ N +   + R D +   
Sbjct: 8  VTGAMVTQFNRLNVISNNLANLNTTAFKRDDVVVGD 43


>gi|307726113|ref|YP_003909326.1| cellulose synthase operon C domain-containing protein [Burkholderia
            sp. CCGE1003]
 gi|307586638|gb|ADN60035.1| cellulose synthase operon C domain protein [Burkholderia sp.
            CCGE1003]
          Length = 1646

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 86/387 (22%), Gaps = 18/387 (4%)

Query: 27   NIENADNKNYVRRDT----MTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQS 82
            N+ NA                  +     V   RS    +        S+    +  +Q 
Sbjct: 1233 NVANAQTLGVAEELAQVNREQASTVSGGIVFRNRSGEDGL--------STLTDIEAPVQG 1284

Query: 83   FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142
                            +     +    S  + ++  +      +            + +A
Sbjct: 1285 RIKAGNGHVVVTATPVTLDAGTAAGNVS--TLARFGAGLSNSTSAAAAVAGTNNYGSQTA 1342

Query: 143  REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS 202
              V        + +  +I        E  +V  A      S   ++     R  +   + 
Sbjct: 1343 SGVGLSVGYEGRSLSGDIGVTPIGFRETNLVGGAQYNGGISDKVSYSLAVARRAVTDSLL 1402

Query: 203  EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
               G            V ++ G                 +Y      N    + V     
Sbjct: 1403 SYAGTRDAASGLEWGGVTSTGGLASLAWDDGTNGLYVNAAYQYYQGHNVASNNAVKGGGG 1462

Query: 263  QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
              + + K   + L    ++ +  +   L        G FS +  +  N            
Sbjct: 1463 VYTRLLKDADQTLTVGVNTTLMRYNKNLSYFTYGQGGYFSPQQYVILNLPIEWTGRNGAF 1522

Query: 323  IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA----GYPDLINHY 378
              D+   +          N     +   L+   + +   + N  +      G       Y
Sbjct: 1523 TYDVKGSIGVQHYRQDASNYFPLGDSGGLQAAAAANATLIGNSVDSNAQYPGQSKTGVSY 1582

Query: 379  CDSFNKNFIFDPVAGINTNVTLLEYAR 405
              S    +   P        +L    +
Sbjct: 1583 SLSAVGEYQLAPQLAFGATASLGNAYQ 1609


>gi|218549198|ref|YP_002382989.1| flagellar basal body rod protein FlgC [Escherichia fergusonii
          ATCC 35469]
 gi|218356739|emb|CAQ89367.1| flagellar component of cell-proximal portion of basal-body rod
          [Escherichia fergusonii ATCC 35469]
 gi|324113869|gb|EGC07843.1| flagellar basal-body rod protein FlgC [Escherichia fergusonii
          B253]
 gi|325497618|gb|EGC95477.1| flagellar basal body rod protein FlgC [Escherichia fergusonii
          ECD227]
          Length = 134

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKHVVFQVDNAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVAGV 67


>gi|160939631|ref|ZP_02086979.1| hypothetical protein CLOBOL_04523 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437422|gb|EDP15186.1| hypothetical protein CLOBOL_04523 [Clostridium bolteae ATCC
          BAA-613]
          Length = 144

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMT 43
          M  L   N   +       +   I++N+ N +     +   Y R+  + 
Sbjct: 1  MGYLDSLNITGSALTAERFRTDIIMQNLANQNTTRTAEGGPYKRKQVVF 49



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            VN  EE+  L+   ++Y  +   +     M
Sbjct: 105 NVNSAEEMVDLMAASRAYEANVTALNVAKSM 135


>gi|146293693|ref|YP_001184117.1| flagellar basal body rod protein FlgB [Shewanella putrefaciens
          CN-32]
 gi|145565383|gb|ABP76318.1| flagellar basal-body rod protein FlgB [Shewanella putrefaciens
          CN-32]
 gi|319427092|gb|ADV55166.1| flagellar basal-body rod protein FlgB [Shewanella putrefaciens
          200]
          Length = 134

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
                     I  NI NAD  +Y  RD   +
Sbjct: 17 GIRAERA--EVISSNIANADTPHYKARDVDFS 46


>gi|254720629|ref|ZP_05182440.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13]
 gi|265985673|ref|ZP_06098408.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13]
 gi|306837353|ref|ZP_07470232.1| flagellar basal body rod protein FlgF [Brucella sp. NF 2653]
 gi|264664265|gb|EEZ34526.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13]
 gi|306407545|gb|EFM63745.1| flagellar basal body rod protein FlgF [Brucella sp. NF 2653]
          Length = 243

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 4/127 (3%), Positives = 26/127 (20%), Gaps = 2/127 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ N     +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTVIDN 130
                + 
Sbjct: 121 LDVGGEP 127


>gi|228938885|ref|ZP_04101485.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971766|ref|ZP_04132387.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978375|ref|ZP_04138752.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           Bt407]
 gi|228781392|gb|EEM29593.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           Bt407]
 gi|228787856|gb|EEM35814.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820734|gb|EEM66759.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 249

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 52/222 (23%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D + T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGVVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +SA      L    A           + +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +           I    +      +   +V   
Sbjct: 120 TSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEITQNNIARLQTKTVDAETNARLVQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 221



 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 186 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 241


>gi|330808196|ref|YP_004352658.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376304|gb|AEA67654.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 245

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/216 (7%), Positives = 44/216 (20%), Gaps = 17/216 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQRAHANNLANISTNGFQKDLEQARSMPVFGDSFPARAFAMSERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +     L      +        + A++                   L        +  
Sbjct: 63  ATDFTPGALVETGRDLDVAVSGPGWMAVQN------PDGGESYVRTGSLNVDALGVLRAG 116

Query: 119 SEDILGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q         +          +  E+  ++    +L  +   +
Sbjct: 117 NGMPVMGNGGPIAVPPEQKIEIGQDGTISIRAMGEGPRVMAEVDRIKLVNPDLKNMTKGL 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRN 213
                +K      +D    L+    E   ++ +   
Sbjct: 177 DGSIRTKDGQPAPIDANVQLVSGFQEASNVNAVDEM 212


>gi|289612565|emb|CBI60084.1| unnamed protein product [Sordaria macrospora]
          Length = 159

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/154 (5%), Positives = 20/154 (12%), Gaps = 15/154 (9%)

Query: 21  FASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQRSENKNMF---------DK 65
              I  N+ N +   + R               +      +      +            
Sbjct: 1   MRVISNNLANVNTTGFKRDRASFEAMSYQIITAQGAASTQESRYATGLNLGTGVRIQGTA 60

Query: 66  VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            +    S       L                             S E          +  
Sbjct: 61  SIQTQGSLATTGNALDMAMEGDGYFQVQMPGGQLGYTRAGNFTRSAEGLLVTTEGYQVMP 120

Query: 126 TVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            +                    I      + +  
Sbjct: 121 GITLPEGATSITIGNDGTVSATIPNQTRSDGDRT 154


>gi|283954448|ref|ZP_06371968.1| putative flagellin [Campylobacter jejuni subsp. jejuni 414]
 gi|283794065|gb|EFC32814.1| putative flagellin [Campylobacter jejuni subsp. jejuni 414]
          Length = 750

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 119/388 (30%), Gaps = 3/388 (0%)

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
           ++    +  + ++   ++          D +   + D         +      +K     
Sbjct: 365 NNGDITNLNNPVTITINNQNFTIDLKQTDFIKSKMTDTDGNTTNGADYDNVYFEKNGNTV 424

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVR 212
              +   I     + ++ T +++ +   + +    +  +  +      ++  +  ST+  
Sbjct: 425 YGNVSQVIKGSNVYATDSTKLSEVMAGDSLNGTTLNLKVSSKGGNSYDVTINLQNSTVSY 484

Query: 213 NNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKI 272
            N +    T     +        +     S  +T       I           ++     
Sbjct: 485 PNPNNPGQTISFPIVHTDPTTGNSGVVTGSNDITYGQINDIIGMFAADKIPTQSIAATNG 544

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
           K      +++  + ++    +   +            +S     + ++D       +   
Sbjct: 545 KVDANGYNNLQQLMKDSQATVDVSMDYKGRISVTDKLSSGTNIEISLSDSQSGRFPQPPF 604

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
             +  +   P +  + +        +   + ++ ++       N   DS +++     + 
Sbjct: 605 TTTSLVANGPNFSFSANNSLVIDEPNVDIIKDLDSMIDAVLKGNMRADSESEDPRNTGMQ 664

Query: 393 GINTNVT-LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFL 451
           G    +  L ++       +    +   D++ +S  +  ++    SN + ++  E +  L
Sbjct: 665 GALKRLDHLADHISKLNTTMGAYHNTIKDVNTRSTFLSVNVQSIKSNVIDMDYGEAMINL 724

Query: 452 IKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           ++V+ +Y  S K      ++  +LL  +
Sbjct: 725 MQVQLAYQASLKASTTISQL--SLLNYM 750


>gi|254520946|ref|ZP_05133001.1| flagellar basal-body rod protein FlgF [Stenotrophomonas sp. SKA14]
 gi|219718537|gb|EED37062.1| flagellar basal-body rod protein FlgF [Stenotrophomonas sp. SKA14]
          Length = 249

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 36/163 (22%), Gaps = 2/163 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A      + Q   ++  N+ N+D   +      T   P        R +  ++
Sbjct: 1   MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAFPIRGPGFASRVDALHV 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                    +     + L         ++      +      + L  +        S   
Sbjct: 61  DAGFNRRPGAQHITGKPLDLALQTGTWLAVQSTDGSEAYTRGAALSVTPNGQLVTSSGRP 120

Query: 123 LGKTVIDNAEEVVQNFNTS--AREVQKIRADADKEIELEISNL 163
           +     +                 +  I      +   ++  +
Sbjct: 121 VLDDNNNPIAIPPYQAMEIGADGTISIIPQGEGPQTMAQVGRI 163


>gi|254246963|ref|ZP_04940284.1| Flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          PC184]
 gi|124871739|gb|EAY63455.1| Flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          PC184]
          Length = 141

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +    P   
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPLGG 57


>gi|114562339|ref|YP_749852.1| flagellar basal body rod protein FlgB [Shewanella frigidimarina
          NCIMB 400]
 gi|114333632|gb|ABI71014.1| flagellar basal-body rod protein FlgB [Shewanella frigidimarina
          NCIMB 400]
          Length = 132

 Score = 38.9 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
                     I  NI NA+  +Y  +D     + +  +
Sbjct: 17 GVRAQRA--EVISSNIANANTPHYKAQDVNFASAMQAAS 53


>gi|206895667|ref|YP_002246664.1| flagellar hook-basal body complex protein, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738284|gb|ACI17362.1| flagellar hook-basal body complex protein, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 227

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 21/44 (47%)

Query: 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           Y  T  V+   +++ L+ + + Y  + K++   D  L  ++  +
Sbjct: 183 YLETSNVDEIGQVTALMTILRHYQSNVKVVQAEDAALAKIINIM 226


>gi|325529011|gb|EGD06024.1| flagellar basal body rod protein FlgC [Burkholderia sp. TJI49]
          Length = 141

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 15/75 (20%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI---------S 46
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +            S
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGGARTAS 62

Query: 47 PENVTVVTQRSENKN 61
           + V  V       +
Sbjct: 63 GQGVGGVRVTKVVDD 77


>gi|292492360|ref|YP_003527799.1| flagellar basal-body rod protein FlgB [Nitrosococcus halophilus
          Nc4]
 gi|291580955|gb|ADE15412.1| flagellar basal-body rod protein FlgB [Nitrosococcus halophilus
          Nc4]
          Length = 133

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 1  MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          MS+   +         +  S++   +  N+ NAD   Y  RD     + +      
Sbjct: 1  MSISFDSALGIHPYALSLWSRRAELLAANLANADTPGYKARDIDFKTALQQAQGQG 56


>gi|259907632|ref|YP_002647988.1| Flagellar basal-body rod protein, FlgC [Erwinia pyrifoliae
          Ep1/96]
 gi|224963254|emb|CAX54738.1| Flagellar basal-body rod protein, FlgC [Erwinia pyrifoliae
          Ep1/96]
 gi|283477474|emb|CAY73390.1| Flagellar basal-body rod protein flgC [Erwinia pyrifoliae DSM
          12163]
 gi|310764862|gb|ADP09812.1| Flagellar basal-body rod protein, FlgC [Erwinia sp. Ejp617]
          Length = 134

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT-ISPENVTVV 53
          MSL +VF+ + +     S++      N+ NA          Y  R       +     + 
Sbjct: 1  MSLFSVFDISGSAMAAQSKRLNVSASNMANADSVVGPDGQPYRARQVTFEVDAAAGNEIG 60

Query: 54 TQ 55
            
Sbjct: 61 GV 62


>gi|153011530|ref|YP_001372744.1| flagellar basal body rod protein FlgF [Ochrobactrum anthropi ATCC
           49188]
 gi|151563418|gb|ABS16915.1| flagellar basal body rod protein [Ochrobactrum anthropi ATCC 49188]
          Length = 243

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 5/124 (4%), Positives = 24/124 (19%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ N     +    T       N              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSNKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           ++  +             ++         +++   +
Sbjct: 61  KSFIRTEAGPMIKTDNPLDVAVKGDVWMSVSTPQGQIYTRDGRMNMLPTGDLVSITGHPV 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|229544390|ref|ZP_04433448.1| flagellar basal-body rod protein FlgB [Bacillus coagulans 36D1]
 gi|229324875|gb|EEN90552.1| flagellar basal-body rod protein FlgB [Bacillus coagulans 36D1]
          Length = 129

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 1   MSLLAVFNKAQN---ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRS 57
           MSL +  N  ++       AS +   I  NI NAD  NY  +D       E+       +
Sbjct: 1   MSLSS--NTLRSLEHALQYASLRQKVISNNIANADTPNYKAQDVSFKNVLEDSVNAISAT 58

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
                  +     SS+        ++ +    +  D    N  ++ I
Sbjct: 59  RTDPRHFRFSAGDSSSEIVTESGTTYNSNGNSVDIDTEMANLASNQI 105


>gi|14518320|ref|NP_116803.1| putative beta-agarase precursor [Microscilla sp. PRE1]
 gi|14484955|gb|AAK62837.1| MS115, putative beta-agarase precursor [Microscilla sp. PRE1]
          Length = 1330

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/383 (8%), Positives = 89/383 (23%), Gaps = 23/383 (6%)

Query: 32   DNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMS 91
            ++  +  +  +T  +    + +   +       +   +                      
Sbjct: 861  NDGGFTAQSAVTVTTGGGGSAIVIEA-------ESFTSTGGTTDDSPYGG-------PGI 906

Query: 92   ADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRAD 151
              ++   +  +  S+                +   +   +      F      V      
Sbjct: 907  GVNNAGTNINYVNSEDWAEYGINVSEAGTYQIEYQISTPSNNAQVRFELDGNVVSTDNVP 966

Query: 152  ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIV 211
             + + +     +                  AS  +A  +   +  L +  S  + ++ + 
Sbjct: 967  NNGQWDSYTKLIAGSTISTLSTGSHTVRLVASGANAWQWNLDKVTLTKTGSSTVNVTGVS 1026

Query: 212  RNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGK 271
             +  ++ +     T L ETV      +K  S++  + +        +VS+     V  G 
Sbjct: 1027 ASPTNVSLSIGGSTDLTETVNPGNATDKSVSWSSNNTAVATVDANGLVSA-----VGAGT 1081

Query: 272  IKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLC 331
                +   D       +        +  +   +D       +      +       N   
Sbjct: 1082 AVITVTTSDGGHTATCSVTVSGGNSVELTIQAEDFATTGGTHDGFQVYSVNGVTATNWNQ 1141

Query: 332  QGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPV 391
             G      V      + S     G+        +              +     F    V
Sbjct: 1142 TGDWADYSVTIPEAGDYSIEYFMGTTVNGAAVTISVDGAVQRTDAVPNNGNWDVFESLKV 1201

Query: 392  AG----INTNVTLLEYARNSIGW 410
             G       + T+      + GW
Sbjct: 1202 GGRISLNAGSHTIRLLGDGTNGW 1224


>gi|323698500|ref|ZP_08110412.1| flagellar basal-body rod protein FlgC [Desulfovibrio sp. ND132]
 gi|323458432|gb|EGB14297.1| flagellar basal-body rod protein FlgC [Desulfovibrio desulfuricans
           ND132]
          Length = 145

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 443 NLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
           N+ EE++ +++  + Y  + + +     M Q  L
Sbjct: 108 NVVEEMANMMQAMRGYEANVQTVQAVKNMFQKAL 141



 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA---DNKN---YVRRDTMTTISP 47
          M  +   + + +       Q   I  N+ N    +      Y R+      +P
Sbjct: 1  MDFMTALDISASGLTAQRAQLNVISMNMANMRTTETAGGGPYQRKTVSFEATP 53


>gi|308273186|emb|CBX29789.1| Flagellar basal-body rod protein flgC [uncultured Desulfobacterium
           sp.]
          Length = 140

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 17/35 (48%)

Query: 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            +   V+L  E++ ++    +++ +   I  T +M
Sbjct: 97  LSKPNVDLAVEMANMLMARNAFSANLSAIKSTRQM 131



 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 4/34 (11%), Positives = 12/34 (35%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+ +     + +      ++   I  N+ N +  
Sbjct: 1  MNFMESLKISSSGLYAQRKRMDIIAENLSNIETT 34


>gi|83594157|ref|YP_427909.1| flagellar basal body rod protein FlgC [Rhodospirillum rubrum ATCC
           11170]
 gi|83577071|gb|ABC23622.1| Flagellar basal-body rod protein FlgC [Rhodospirillum rubrum ATCC
           11170]
          Length = 137

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            VN   E+  + + ++SY  +  +I  T +M +  LE ++
Sbjct: 97  NVNPMVEMMDMREAQRSYEANLNVITATREMTRNTLELLR 136


>gi|283833632|ref|ZP_06353373.1| flagellar basal-body rod protein FlgC [Citrobacter youngae ATCC
          29220]
 gi|291071315|gb|EFE09424.1| flagellar basal-body rod protein FlgC [Citrobacter youngae ATCC
          29220]
          Length = 134

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSKRLNVAASNMANADSVTGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|239995128|ref|ZP_04715652.1| flagellar basal-body rod protein FlgB [Alteromonas macleodii ATCC
          27126]
          Length = 144

 Score = 38.9 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/69 (10%), Positives = 21/69 (30%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHS 71
          +     +++   I  N+ NA+   Y  RD     + ++           +    ++  + 
Sbjct: 14 SALTIRTERMEVISGNLANANTPGYKARDIDFNKAMQSAMREASGGTANHASSGMVRTND 73

Query: 72 SAIGQQRLL 80
            +      
Sbjct: 74 RHLSGNSTS 82


>gi|319787123|ref|YP_004146598.1| flagellar basal-body rod protein FlgC [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465635|gb|ADV27367.1| flagellar basal-body rod protein FlgC [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 135

 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MS L +F+ A +     S + ++I  N+ NAD
Sbjct: 1  MSNLPIFDVAGSALQAQSVRLSTIASNLANAD 32


>gi|187925763|ref|YP_001897405.1| flagellar basal body rod protein FlgC [Burkholderia phytofirmans
          PsJN]
 gi|187716957|gb|ACD18181.1| flagellar basal-body rod protein FlgC [Burkholderia phytofirmans
          PsJN]
          Length = 141

 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NA          Y  +  +  +SP   
Sbjct: 3  SLMNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVFAVSPLGG 57


>gi|254446126|ref|ZP_05059602.1| conserved domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198260434|gb|EDY84742.1| conserved domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 250

 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
                  V+   E+  LI V +S+ I+ ++I   D +L   ++
Sbjct: 203 GSLEQSNVSATTEMINLINVSRSFQINQRVIQQHDDVLGKAIQ 245


>gi|91225871|ref|ZP_01260840.1| flagellar basal-body rod protein C [Vibrio alginolyticus 12G01]
 gi|91189521|gb|EAS75797.1| flagellar basal-body rod protein C [Vibrio alginolyticus 12G01]
          Length = 137

 Score = 38.9 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51


>gi|291484170|dbj|BAI85245.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp.
          natto BEST195]
          Length = 150

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          M+     N + +       +   +  N+ N D  
Sbjct: 1  MTAFHSLNVSASALTAQRVRMDVVSSNLANMDTT 34


>gi|114567879|ref|YP_755033.1| flagellar basal-body rod protein (flgG-2) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114338814|gb|ABI69662.1| flagellar basal-body rod protein (flgG-2) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 246

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/129 (5%), Positives = 21/129 (16%), Gaps = 34/129 (26%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTI---------------------------SPENVTVVT 54
             +  N+ N +   + +   +                                   T  +
Sbjct: 9   DVVANNLANVNTSGFKKNTAVAKAFPDMLISRLGECKEDKQGQLKVQSPVVIGRLGTGAS 68

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +  +  L    S          +                      + + + E  
Sbjct: 69  ISGIYTDFDNNNLKKTDSPCDLAITGAGY-------FVVQTPEGQRFTRCGEFKINSEGI 121

Query: 115 SKNLSEDIL 123
               S   +
Sbjct: 122 LTTNSGYPV 130


>gi|27380924|ref|NP_772453.1| flagellar basal body rod protein FlgC [Bradyrhizobium japonicum
          USDA 110]
 gi|27354090|dbj|BAC51078.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA
          110]
          Length = 141

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 7/48 (14%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENA----DNKN---YVRRDTMTTIS 46
              A +     + +   I  NI NA           Y R+    + +
Sbjct: 11 SMAIATSGLRAQAGRMRVISENIANADSTSQTAGGDPYRRKVPTFSSA 58


>gi|283784083|ref|YP_003363948.1| lateral flagellar basal-body rod protein [Citrobacter rodentium
           ICC168]
 gi|282947537|emb|CBG87089.1| lateral flagellar basal-body rod protein [Citrobacter rodentium
           ICC168]
          Length = 143

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      N     
Sbjct: 1   MSFTDIYQISGSAMTAQTIRLNTVASNLANAEAPASSEAQAYKARSPVFAAVYNNSLTGA 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +     + G  +  +    + +      + + +    ++ +  +   +
Sbjct: 61  HHRHAIDGASVQVQDVLQSGGAVKRYEPHHPMADNNGYVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|253702510|ref|YP_003023699.1| flagellar basal-body rod protein FlgC [Geobacter sp. M21]
 gi|251777360|gb|ACT19941.1| flagellar basal-body rod protein FlgC [Geobacter sp. M21]
          Length = 145

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISP 47
          M      + +         +   I  N+ N ++    +   Y R+D + T +P
Sbjct: 1  MDFFTSMDISATALAAERTRMNLISSNLANVNSTRTAEGGPYRRKDAVFTATP 53


>gi|189536396|ref|XP_001919224.1| PREDICTED: cyclin-G-associated kinase-like isoform 2 [Danio rerio]
          Length = 1278

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/278 (9%), Positives = 61/278 (21%), Gaps = 16/278 (5%)

Query: 175  DAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR- 233
                    S  D     D         +      T+   +       +DG    +     
Sbjct: 760  SDPPQSENSPDDPQTESDSPSPQSTDTNANNFFQTLDWEDTSRHFDHADGHLDDQEDLSG 819

Query: 234  -----DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                  +++      T++ +++    +    ++   +      +  L       VP    
Sbjct: 820  GSEEESVSYSAPIEGTLSRDTSEPLFEADFTNTPPEAQPDTEDLLGLNSEPGPAVPESGL 879

Query: 289  QLDEMARVLIGS---FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
            +       L+       + + +   S        A       N   Q    T        
Sbjct: 880  KSSASNSNLLNDLLFAPQTNTVPSASNEDLMGEDAGEDLFFSNSSSQPPPATNKDFFDPF 939

Query: 346  SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
               S              +  N              FN N +      + ++ +  +   
Sbjct: 940  GVGSASSGSDLFGDLLGSDAANSGFKAPAPASNSSLFNLNKLASETPKMTSSASQPDLLS 999

Query: 406  NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
                W     S + +L   +            +  GV+
Sbjct: 1000 GWDSWATSGTSTTANLSTAANKP-------SMSASGVS 1030


>gi|107023955|ref|YP_622282.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia
          AU 1054]
 gi|116691042|ref|YP_836665.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia
          HI2424]
 gi|170734376|ref|YP_001766323.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia
          MC0-3]
 gi|206558966|ref|YP_002229726.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia
          J2315]
 gi|105894144|gb|ABF77309.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          AU 1054]
 gi|116649131|gb|ABK09772.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          HI2424]
 gi|169817618|gb|ACA92201.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia
          MC0-3]
 gi|198035003|emb|CAR50875.1| flagellar basal-body rod protein FlgC (putative proximal rod
          protein) [Burkholderia cenocepacia J2315]
          Length = 141

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +    P   
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPMGG 57


>gi|21686711|ref|NP_663211.1| hypothetical protein [Phthorimaea operculella granulovirus]
 gi|21637027|gb|AAM70244.1| hypothetical protein [Phthorimaea operculella granulovirus]
          Length = 810

 Score = 38.5 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/354 (10%), Positives = 96/354 (27%), Gaps = 22/354 (6%)

Query: 95  HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154
           + N +    + KL D  +          L   V  + + +    N+ A +   ++ +  K
Sbjct: 320 NENKTLKENLEKLNDDYQQLQSQSKNTNLQNQV--HVKNLTSQNNSLANDNNFLQTEYKK 377

Query: 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST----- 209
            IE                N  +      + +        D   ++ +E +         
Sbjct: 378 CIEAYTKLTND--CRNLNQNPILINPEDRETNEELIRMVLDPEDREDNEELMRMVEDEIN 435

Query: 210 --IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
                N  +  +      T       +I     +S+   +ES           S   S +
Sbjct: 436 QIDTTNQYNPNITNQSSFTPNIAQSSNITNTTQSSFNPNTESTTQSSFNPNTQSTNQSNL 495

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG--IKD 325
                ++    +         Q +   + +  S S    IA +      +  ++    + 
Sbjct: 496 NSNTNQSESTNQSESTNQSIAQSESTNQSIAQSESTNQSIAQSESTNRSIAQSNQSTNRS 555

Query: 326 LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCD----- 380
           + +   +  + +       +S+ +  +   +   +               N   +     
Sbjct: 556 IQSSNQESTNRSTNQESTNQSDSTTNQSESTNRSESTNQESTNQSDSTNQNQSLNIESRN 615

Query: 381 ----SFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
                 N+N   +       N +   +  NS   +E +  D   + +  + ++ 
Sbjct: 616 QSTLQLNENTNQNTDNSFLYNASTNPFYSNSNTIIELDSDDDSVVDVSEESIYE 669


>gi|329117809|ref|ZP_08246526.1| YhgE/Pip N-terminal domain protein [Streptococcus parauberis NCFD
           2020]
 gi|326908214|gb|EGE55128.1| YhgE/Pip N-terminal domain protein [Streptococcus parauberis NCFD
           2020]
          Length = 833

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/369 (7%), Positives = 87/369 (23%), Gaps = 14/369 (3%)

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAE 132
           A G  + L   + +   +    +  N  +   S+L D +  Y+   S      T I    
Sbjct: 187 ANGANKALDGSQQITNNLLLLANAGNQLSSGASQLNDGIGQYT---SGVGQLNTGIGKLS 243

Query: 133 EVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD 192
             +  +     ++ +     +   +       +     + + + +   +           
Sbjct: 244 TGLTTYTNGVSQLSQGANQLNANSQNLKDGANQIAGGASQMQELVDGASKLNAGLVQLQT 303

Query: 193 QRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPI 252
           +  +  ++ + I  + T++      +                   E  N    T+ +   
Sbjct: 304 ETSLSPEQTASIQALQTVLPAIQQGI-----------NQLNKTVAELGNQSATTTTTTSP 352

Query: 253 FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE 312
            +    V      +     I A    + ++    Q      +          + I+   +
Sbjct: 353 NLSQAKVDLTSIISQADTIISATTSDKATITASVQGTSAYQSLTPAQQAEISNAISATPQ 412

Query: 313 NVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYP 372
           +                       T   +    +  + L    +           +    
Sbjct: 413 SSNATAAQAIKSAAGELQTTLDQVTGQSSTTTTNPSASLGQLQTSVATLNNTANVVLPGA 472

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
               +           +    +  +  +L   +     L  N S   +   +       +
Sbjct: 473 VTALNTLSGGLAEVNSNSSKMVAASSRILGGVQGLQTTLATNGSKLANGITQYTDGVGQL 532

Query: 433 SESYSNTVG 441
           +   +   G
Sbjct: 533 ASGANQLSG 541


>gi|301053310|ref|YP_003791521.1| flagellar basal-body rod protein [Bacillus anthracis CI]
 gi|300375479|gb|ADK04383.1| flagellar basal-body rod protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 243

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 189 NGVGTVKNYMLENSNVDMTKEMADLMTDQKMISASQRVMTSFDKIYE 235


>gi|260779349|ref|ZP_05888241.1| flagellar basal-body rod protein FlgC [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605513|gb|EEX31808.1| flagellar basal-body rod protein FlgC [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 144

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTISPENVTVVT 54
           MS   +++ A +  N  + +  ++  N+ NAD      +  Y     +         +  
Sbjct: 1   MSFTDIYSIAGSAMNAQTVRLNTVASNLANADAVSANPDDAYKALKPVFATVYSKTQLSA 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +    N   +++    SA   ++  +    L        + +      ++ +  +  S+
Sbjct: 61  SKESYPNAEVRIVDVVQSAGQAEKRFEPSNPLANDEGYVYYPDIDVVSEMADMMSATRSF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|217421928|ref|ZP_03453432.1| hemagglutinin [Burkholderia pseudomallei 576]
 gi|217395670|gb|EEC35688.1| hemagglutinin [Burkholderia pseudomallei 576]
          Length = 985

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/427 (6%), Positives = 73/427 (17%), Gaps = 3/427 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 299 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 355

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 356 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 415

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 416 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 475

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 476 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 535

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  +                            +     + 
Sbjct: 536 STANGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTANGTNSTASGDNSTAS 595

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 596 GTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTASGTNASATGENSTATGTDS 655

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            D+   +       G N+  T      +         + +   
Sbjct: 656 AASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASGNNSTANGANSTASG 715

Query: 422 HMKSQVV 428
              +   
Sbjct: 716 AGATATG 722


>gi|89095665|ref|ZP_01168559.1| flagellar basal-body rod protein [Bacillus sp. NRRL B-14911]
 gi|89089411|gb|EAR68518.1| flagellar basal-body rod protein [Bacillus sp. NRRL B-14911]
          Length = 279

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 3/35 (8%), Positives = 13/35 (37%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          +   F    +   +  ++   +  N+ N++   + 
Sbjct: 1  MFRGFYTVASGMLSQQRRTEMLTNNMANSNTPGFK 35



 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 3/47 (6%), Positives = 22/47 (46%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
            + + +  +  V+    ++ ++   +++  + K++   D+ ++ +  
Sbjct: 227 ALQQGFLESSNVDASRTMTDMMTAYRAFEANQKVLQAYDRSMEKMAN 273


>gi|148266225|ref|YP_001232931.1| flagellar basal-body rod protein FlgC [Geobacter uraniireducens
          Rf4]
 gi|146399725|gb|ABQ28358.1| flagellar basal-body rod protein FlgC [Geobacter uraniireducens
          Rf4]
          Length = 146

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTVVT 54
          M      + + +       +   I  N+ NA++    +   Y R+D + +  P   +  +
Sbjct: 1  MDFFTSMDISSSALTAERTRMNLISSNLANANSTRTAEGGPYRRKDAVFSARPVAESFSS 60

Query: 55 Q 55
           
Sbjct: 61 V 61


>gi|238757389|ref|ZP_04618575.1| hypothetical protein yaldo0001_33090 [Yersinia aldovae ATCC 35236]
 gi|238704428|gb|EEP96959.1| hypothetical protein yaldo0001_33090 [Yersinia aldovae ATCC 35236]
          Length = 1113

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/411 (8%), Positives = 89/411 (21%), Gaps = 5/411 (1%)

Query: 41  TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
           T+ + S  +   ++         +      S        L    +     +   +  NS 
Sbjct: 164 TVISTSGASAYGISGSGGTHLTVNNTTVNTSGGGSYGIYLNDLGSTLSGANNTINNTNST 223

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNA-EEVVQNFNTSAREVQKIRADADKEIELE 159
           +     +     + + + +   +                         I    D   +  
Sbjct: 224 SGTGIYIGYGGINATLDNTSINMNNAYAGVTVGRDSSIVMEGLNATGNIAQVLDITGKAT 283

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
           ISN    L+   V+       +       + ++            + ++  +  N     
Sbjct: 284 ISNANIELASGGVLRAMGNSLSNKAIIILNNVNAVSNSGGATMLNVNMNADLTVNGGSYH 343

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID--GVVVSSNQGSAVPKGKIKALLQ 277
              +  T         +F+  N+  VT  +N   I+  G  V  N  +         +  
Sbjct: 344 SKGNNATGVWIPDNTSSFKAKNTVVVTEGANATAIENRGTAVVENTTAITKGNNSHGIYS 403

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
                          +  +   +    +     +           +           + T
Sbjct: 404 ELSFDAKDMVISTAGVGSIGATAARGGNLNLTGAAIDTTGASGMVLGTFAGSSINAKNVT 463

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                                K        +             ++K  + +        
Sbjct: 464 ATSTGASAYALWTQTSSSIALKDSRITTTGMNAGGIYATGSNAVYSKVTLDNAQVISENG 523

Query: 398 VTLLEYARNSIGWL--EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQE 446
             +  Y  N    +      +  + L + +      ++   +    VNL  
Sbjct: 524 AGIRAYGANINVDVNNGSQLTGGNGLLVNASTNVGTVASPLNIISNVNLNA 574


>gi|229166584|ref|ZP_04294336.1| Flagellar basal-body rod protein [Bacillus cereus AH621]
 gi|228616838|gb|EEK73911.1| Flagellar basal-body rod protein [Bacillus cereus AH621]
          Length = 161

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 46 NTVSSNIANANTPGYKAQDVTFAE 69


>gi|33590255|gb|AAQ22688.1| flagellin [Escherichia coli]
          Length = 420

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/404 (8%), Positives = 119/404 (29%), Gaps = 11/404 (2%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                + + ++  +     + +     + +    L+   + DD    +  +  +     L
Sbjct: 2   AQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              ++N ++       I  A+      +     +Q++R +   +     ++     S   
Sbjct: 62  TQAARNAND------GISVAQTTEGALSEINNNLQRVR-ELTVQATTGTNSESDLSSIQD 114

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   ++                     K++  +G +       D+    S    L    
Sbjct: 115 EIKSRLEEIDRVSSQTQFNGVNVLAKDGKMNIQVGANDGQTITIDLKKIDSSTLNLSSFD 174

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++     +  T+  +      D    +S     +   +      + D+    + +   
Sbjct: 175 AANLGTSVKDGATINKQVAVGAGDFKDKASGSLGTLKLVEKDGKYYVNDTKSSKYYDAEV 234

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + ++  I  F+  +           +        LD    +     +    +  ++   +
Sbjct: 235 DTSKGEIN-FNSTNESGTTPTAATEVTTVGRDVKLDASALKANQSLVVYKDKSGNDAYII 293

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +     + +  +N  N++    L      +   N   DP+  ++  +  ++  R+S+G +
Sbjct: 294 QTKDVTTNQSTFNAANISDAGVLSIGASTTAPSNLTADPLKALDDAIASVDKFRSSLGAV 353

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +     +      +    +       +    +   E+S + K +
Sbjct: 354 QNRLDSAIANLNNTTTNLSEAQSRIQDA---DYATEVSNMSKAQ 394


>gi|306846298|ref|ZP_07478859.1| flagellar basal body rod protein FlgF [Brucella sp. BO1]
 gi|306273293|gb|EFM55162.1| flagellar basal body rod protein FlgF [Brucella sp. BO1]
          Length = 243

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 4/127 (3%), Positives = 26/127 (20%), Gaps = 2/127 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ N     +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTVIDN 130
                + 
Sbjct: 121 LDVGGEP 127


>gi|56460255|ref|YP_155536.1| flagellar basal body protein [Idiomarina loihiensis L2TR]
 gi|56179265|gb|AAV81987.1| Flagellar basal body protein [Idiomarina loihiensis L2TR]
          Length = 134

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 2/39 (5%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
                 +   I  NI NAD   Y  +      + +   
Sbjct: 17 GVRTQRAEL--IANNIANADTPGYKAKGLDFQQALQQAQ 53


>gi|22126389|ref|NP_669812.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM 10]
 gi|45441408|ref|NP_992947.1| flagellar basal body rod protein FlgF [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807174|ref|YP_651090.1| flagellar basal body rod protein FlgF [Yersinia pestis Antiqua]
 gi|108812482|ref|YP_648249.1| flagellar basal body rod protein FlgF [Yersinia pestis Nepal516]
 gi|145598609|ref|YP_001162685.1| flagellar basal body rod protein FlgF [Yersinia pestis Pestoides F]
 gi|149366250|ref|ZP_01888285.1| flagellar basal-body rod protein FlgF [Yersinia pestis CA88-4125]
 gi|162420290|ref|YP_001606474.1| flagellar basal body rod protein FlgF [Yersinia pestis Angola]
 gi|165926032|ref|ZP_02221864.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938686|ref|ZP_02227241.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010809|ref|ZP_02231707.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211025|ref|ZP_02237060.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401087|ref|ZP_02306590.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420459|ref|ZP_02312212.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425815|ref|ZP_02317568.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467492|ref|ZP_02332196.1| flagellar basal-body rod protein FlgF [Yersinia pestis FV-1]
 gi|218928923|ref|YP_002346798.1| flagellar basal body rod protein FlgF [Yersinia pestis CO92]
 gi|229896243|ref|ZP_04511413.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A]
 gi|229897178|ref|ZP_04512334.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897904|ref|ZP_04513055.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902864|ref|ZP_04517981.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516]
 gi|270486644|ref|ZP_06203718.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM D27]
 gi|294504029|ref|YP_003568091.1| flagellar basal-body rod protein FlgF [Yersinia pestis Z176003]
 gi|21959375|gb|AAM86063.1|AE013853_11 cell-proximal portion of basal-body rod protein [Yersinia pestis
           KIM 10]
 gi|45436268|gb|AAS61824.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776130|gb|ABG18649.1| flagellar basal-body rod protein FlgF [Yersinia pestis Nepal516]
 gi|108779087|gb|ABG13145.1| flagellar basal-body rod protein FlgF [Yersinia pestis Antiqua]
 gi|115347534|emb|CAL20443.1| flagellar basal-body rod protein FlgF [Yersinia pestis CO92]
 gi|145210305|gb|ABP39712.1| flagellar basal-body rod protein FlgF [Yersinia pestis Pestoides F]
 gi|149292663|gb|EDM42737.1| flagellar basal-body rod protein FlgF [Yersinia pestis CA88-4125]
 gi|162353105|gb|ABX87053.1| flagellar basal-body rod protein FlgF [Yersinia pestis Angola]
 gi|165913300|gb|EDR31922.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922236|gb|EDR39413.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990153|gb|EDR42454.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166208205|gb|EDR52685.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962154|gb|EDR58175.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049476|gb|EDR60884.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055214|gb|EDR65011.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680311|gb|EEO76410.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516]
 gi|229688945|gb|EEO81010.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693515|gb|EEO83564.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701166|gb|EEO89195.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A]
 gi|262361785|gb|ACY58506.1| flagellar basal-body rod protein FlgF [Yersinia pestis D106004]
 gi|262366079|gb|ACY62636.1| flagellar basal-body rod protein FlgF [Yersinia pestis D182038]
 gi|270335148|gb|EFA45925.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM D27]
 gi|294354488|gb|ADE64829.1| flagellar basal-body rod protein FlgF [Yersinia pestis Z176003]
 gi|320015466|gb|ADV99037.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 209

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++      +        ++ S           ++G    
Sbjct: 67  SQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +          +   +  + A        ++  +
Sbjct: 127 IDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|207724884|ref|YP_002255281.1| hemagglutinin-related protein [Ralstonia solanacearum MolK2]
 gi|206590110|emb|CAQ37071.1| probable hemagglutinin-related protein [Ralstonia solanacearum
           MolK2]
          Length = 1672

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/463 (8%), Positives = 102/463 (22%), Gaps = 36/463 (7%)

Query: 4   LAVFNKA----QNICNNASQQFASIVRNIENADNKNYV-------------RRDTMTTIS 46
            A  N +     +    A Q       N+ ++                          +S
Sbjct: 359 SAALNTSGDLTNSGTLAAQQDLRVNANNVASSGTLGAGVNSDGSLAHAGDLSVVAGGALS 418

Query: 47  PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISK 106
                V    +  +     +  + +SA G   L      L    +          +    
Sbjct: 419 ATGQNVAGGNATLQGASVNLAGSQTSANGNLNLNAQAGNLDLTGATTSAGGALNANAQGA 478

Query: 107 LRDSL-----ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEIS 161
           L +       +  +   +  +  +     ++  +      A   Q     A   +     
Sbjct: 479 LINDRGHLSSQGAATVSAGSLSNQGGQIVSQNALSANVAGALSNQGGTLQAAGALNASAG 538

Query: 162 NLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQ------KISEIIGISTIVRNNN 215
           +L      +  +N      T +    +                 +++    IS +     
Sbjct: 539 SLDNTAGHIASLNTDGLNLTTAGRLTNAQGGTIGGNGNVAVQAGQLNNTGTISAVQNLGV 598

Query: 216 DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL 275
                 ++  TL       ++     +    + +     +    + +  +    G   AL
Sbjct: 599 SAAQTLANAGTLAANGNTTVSAGTTLTNAGGTIAAGQRANVSAATLDNSAGTLTGNQLAL 658

Query: 276 LQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGIS 335
                        Q       +  S    D   G                +++      S
Sbjct: 659 AAATLVNRGGTITQAGTGPIAIGVS-GTLDNTGGAIRTNSADLTLAPATLINDHGTITDS 717

Query: 336 ETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395
            T  ++    S  +      +     +     L     L      + N   + +   G  
Sbjct: 718 GTGTLSVTTGSLSNNGGTIATNGALDVRAGAVLNQGGKLSAQSQATLNVASLDNSAGGFV 777

Query: 396 TNVTLL-------EYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
              ++        + A  ++         +  +      + N 
Sbjct: 778 GAQSVGITDQGGLDNAGGTVAASGALTVSAGSIANAGGAIKNA 820


>gi|115353120|ref|YP_774959.1| flagellar basal body rod protein FlgC [Burkholderia ambifaria
          AMMD]
 gi|170703094|ref|ZP_02893914.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria
          IOP40-10]
 gi|171321836|ref|ZP_02910737.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria
          MEX-5]
 gi|172061974|ref|YP_001809626.1| flagellar basal body rod protein FlgC [Burkholderia ambifaria
          MC40-6]
 gi|115283108|gb|ABI88625.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria
          AMMD]
 gi|170131991|gb|EDT00499.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria
          IOP40-10]
 gi|171092874|gb|EDT38126.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria
          MEX-5]
 gi|171994491|gb|ACB65410.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria
          MC40-6]
          Length = 141

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +    P   
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPMGG 57


>gi|261856359|ref|YP_003263642.1| flagellar basal-body rod protein FlgF [Halothiobacillus
           neapolitanus c2]
 gi|261836828|gb|ACX96595.1| flagellar basal-body rod protein FlgF [Halothiobacillus
           neapolitanus c2]
          Length = 247

 Score = 38.5 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 28/147 (19%), Gaps = 20/147 (13%)

Query: 8   NKAQNI----CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------S 57
             A +         S        N+ N   + +          P        R       
Sbjct: 6   YIAMSGAKQTLLAQSTN----ANNLANVSTQGFKADLDAFQSMPVYGPGYASRVYAQDER 61

Query: 58  ENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
              +     L     ++      Q F A++          ++       L  S     + 
Sbjct: 62  SGTDFAQGPLMTTGRSLDVALKGQGFMAVQ------APDGSTAYTRRGDLHISPNGQLQT 115

Query: 118 LSEDILGKTVIDNAEEVVQNFNTSARE 144
            +   +       A       +     
Sbjct: 116 GTGAPVLGNQGPIAIPPASKIDILGDG 142


>gi|116694217|ref|YP_728428.1| flagellar basal body rod protein [Ralstonia eutropha H16]
 gi|113528716|emb|CAJ95063.1| flagellar basal body rod protein [Ralstonia eutropha H16]
          Length = 135

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            VN  EE+  +I   +SY  + +++     M+
Sbjct: 96  NVNPVEEMVNMISASRSYQANVEVLNTAKNMM 127


>gi|260568536|ref|ZP_05839005.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40]
 gi|260155201|gb|EEW90282.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40]
          Length = 202

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/145 (4%), Positives = 30/145 (20%), Gaps = 2/145 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ NA    +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKI 148
                            +  +V  I
Sbjct: 121 LDVGGAPRISSDGAIYQNGVQVGVI 145


>gi|160903120|ref|YP_001568701.1| flagellar basal-body rod protein FlgB [Petrotoga mobilis SJ95]
 gi|160360764|gb|ABX32378.1| flagellar basal-body rod protein FlgB [Petrotoga mobilis SJ95]
          Length = 133

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTT 44
           +  S +   I +NI N +   Y R+     
Sbjct: 14 MDALSLRQNVISQNIANYETPGYKRKYVDFE 44


>gi|251779966|ref|ZP_04822886.1| flagellar hook-basal body complex protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084281|gb|EES50171.1| flagellar hook-basal body complex protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 257

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++ +    T  VN  EEL  L+++++ +  + K +   D+ +Q    
Sbjct: 205 NVRQGVLETSNVNPTEELVKLMEIKRQFETNQKFVSMQDETVQKAAN 251


>gi|254423049|ref|ZP_05036767.1| RHS Repeat family [Synechococcus sp. PCC 7335]
 gi|196190538|gb|EDX85502.1| RHS Repeat family [Synechococcus sp. PCC 7335]
          Length = 593

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/400 (7%), Positives = 87/400 (21%), Gaps = 8/400 (2%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
           V  +   + +     +    +           + +++    +     +   Y        
Sbjct: 31  VGNRIRTSTDTNADGMPNSITNSNYDADGNLIDRIEDTDLDNFADRKTTFTYDDDGNLLS 90

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
           ESY  +         +    E+  +   +          + D++     ++    + +L 
Sbjct: 91  ESYDTDADGSPNYGYLYTYDEKGNRTSQSYDGNGDG---ETDRQTTYVYNDDNNLIRKLD 147

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
             +      + + +      +Q  V     +            N                
Sbjct: 148 DTDANGAPNSITNYTYDAGGNQTGVFFDPTAAGKPTFISTSTYNGKGQLVRVVDDFDADD 207

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             +       S      S     +    +    +         + +  DS      N++ 
Sbjct: 208 VAERITTFTYSRAGNRTSKREDTNADGTAERITTFAYDRAGNQIRETLDSNADGRPNRIY 267

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
                ++G+ +     +         +  +            I  T   +    ++ +  
Sbjct: 268 AYTYDVLGNQTSASIDSDADGVFNFTYTYEFGTLNAGSGVNLIEGTSDRDQIVGTDGANT 327

Query: 352 RDGGSVS---KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
             GG  +        N     G            +       +   +   +      +  
Sbjct: 328 IIGGDGNDWLSGGAGNDTIEGGDGKDFLIGGLGADMLKGGSGIDTADYRTSATGINVDLD 387

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
             +        D     + +F           G +  EEL
Sbjct: 388 SGVGTGGEAEGDTLTSIERLFGS--NLNDVISGTDEDEEL 425


>gi|156973584|ref|YP_001444491.1| flagellar basal body rod protein FlgC [Vibrio harveyi ATCC
          BAA-1116]
 gi|156525178|gb|ABU70264.1| hypothetical protein VIBHAR_01287 [Vibrio harveyi ATCC BAA-1116]
          Length = 137

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51


>gi|17989452|ref|NP_542085.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 1
           str. 16M]
 gi|256043051|ref|ZP_05445996.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260564283|ref|ZP_05834768.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265989489|ref|ZP_06102046.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17985331|gb|AAL54349.1| flagellar basal-body rod protein flgf [Brucella melitensis bv. 1
           str. 16M]
 gi|260151926|gb|EEW87019.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str.
           16M]
 gi|263000158|gb|EEZ12848.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 173

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 5/124 (4%), Positives = 26/124 (20%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ NA    +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTGNAI 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|328768211|gb|EGF78258.1| hypothetical protein BATDEDRAFT_26795 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 664

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/301 (9%), Positives = 77/301 (25%), Gaps = 18/301 (5%)

Query: 173 VNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232
           ++  +     ++    D + +   +    S    I++  +  N      S+  TL     
Sbjct: 288 LHVDMHQTRHNRWTPPDSVSKATNINHIPSNDGNITSRPQYYNQHYSLHSNAQTLENYQY 347

Query: 233 -----RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQ 287
                        +     ++ +  +     V        P+  + A      +    + 
Sbjct: 348 DPSLYHHRTATSQSQIPNFTDRSSNYTSVPPVDFRLERQFPQSNLHAHSSTTCTSHSAYD 407

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             L  +      +          S                     G++          ++
Sbjct: 408 TNLPPIVNNSNSAMPNCKSNISLSPPKGFTDSPISTPFYTTATSLGVTTESVPITTASAD 467

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                +   VSK+  +   + +        + +S + +       GI  +  L   +  +
Sbjct: 468 ALSGTEAAVVSKEIEFTAHSNSSDTVSNKSFINSTDISLTASSTNGIGPSTALA-ISSAT 526

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              L+   +DS      +  +     +    +  V+    L+ LI          +L+  
Sbjct: 527 NTMLQLTTADSPVSSKTTPDLPFSCGDFSDES--VSSDAALANLI----------RLMTT 574

Query: 468 T 468
            
Sbjct: 575 V 575


>gi|229826299|ref|ZP_04452368.1| hypothetical protein GCWU000182_01671 [Abiotrophia defectiva ATCC
          49176]
 gi|229789169|gb|EEP25283.1| hypothetical protein GCWU000182_01671 [Abiotrophia defectiva ATCC
          49176]
          Length = 131

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI N D   Y R+D     
Sbjct: 25 NLISNNIANNDTPGYKRKDVQFES 48


>gi|134277222|ref|ZP_01763937.1| Hep_Hag family [Burkholderia pseudomallei 305]
 gi|134250872|gb|EBA50951.1| Hep_Hag family [Burkholderia pseudomallei 305]
          Length = 961

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/427 (6%), Positives = 72/427 (16%), Gaps = 3/427 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 275 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 331

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 332 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 391

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 392 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 451

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
             ++      D         +     +    N+       S           D      N
Sbjct: 452 TGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 511

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  +                            +     + 
Sbjct: 512 STANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 571

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 572 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGNNSTASGTNASATGENSTATGTDS 631

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            D+   +       G N+  T      +         + +   
Sbjct: 632 AASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTANGANSTASG 691

Query: 422 HMKSQVV 428
              +   
Sbjct: 692 AGATATG 698


>gi|161526188|ref|YP_001581200.1| flagellar basal body rod protein FlgC [Burkholderia multivorans
          ATCC 17616]
 gi|189349096|ref|YP_001944724.1| flagellar basal body rod protein FlgC [Burkholderia multivorans
          ATCC 17616]
 gi|221199737|ref|ZP_03572780.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          CGD2M]
 gi|221208658|ref|ZP_03581658.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          CGD2]
 gi|221215569|ref|ZP_03588532.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          CGD1]
 gi|160343617|gb|ABX16703.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          ATCC 17616]
 gi|189333118|dbj|BAG42188.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC
          17616]
 gi|221164557|gb|EED97040.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          CGD1]
 gi|221171469|gb|EEE03916.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          CGD2]
 gi|221179976|gb|EEE12380.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans
          CGD2M]
          Length = 141

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 15/75 (20%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI---------S 46
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +            S
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGGARTAS 62

Query: 47 PENVTVVTQRSENKN 61
           + V  V       +
Sbjct: 63 GQGVGGVRVTKVIDD 77


>gi|332525065|ref|ZP_08401245.1| flagellar basal-body rod protein FlgF [Rubrivivax benzoatilyticus
           JA2]
 gi|332108354|gb|EGJ09578.1| flagellar basal-body rod protein FlgF [Rubrivivax benzoatilyticus
           JA2]
          Length = 240

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 24/125 (19%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   +        ++   +  N+ NA    +          P      + R      
Sbjct: 1   MDRLIYLSMGGAKATMERQDVLANNLANASTTGFRAELQAFRAVPVRGDGASTRVYALES 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                          R L      K  ++               +  S E      S   
Sbjct: 61  TVGHDDQSGPLQVTGRNLDVAMRGKSWLAVQSLDGTEAYTRAGSMEVSAEGVLVTPSGLP 120

Query: 123 LGKTV 127
           +    
Sbjct: 121 VLGDG 125


>gi|325685443|gb|EGD27542.1| membrane protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 1297

 Score = 38.5 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/382 (9%), Positives = 88/382 (23%), Gaps = 15/382 (3%)

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           A++ + G Q+L     +L        +   S      KL    ++ ++   +  L   + 
Sbjct: 572 ANTLSAGTQKLKSGTSSLASGSQTLANGTGSLATGAQKLYTGTKTLTRGAQD--LTDNMS 629

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
           +    + Q  +  + E   +      ++   ++ L   L +L  V   I           
Sbjct: 630 NLVSGLDQLKSELSAESGSLDTSKLDQLSEGLTKLNTGLQQLNGVVSQINVPNIDTSKIS 689

Query: 189 DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
             +     L  ++S +    T  ++            +           +  +       
Sbjct: 690 SLVSGLQSLQGQVSNLKKGLTDTQSGLTTAGTGLGTASAAAGSLASSISKVSDPTLKAEL 749

Query: 249 SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
              +      +SS +      G          + +    + +   A  L  S S      
Sbjct: 750 QKELETLNSGLSSTKSGLGTAGSGLTTAGTAATNMNSAASGIQSTAGSLGSSTSA--AST 807

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
            +         A   +               +                V        K  
Sbjct: 808 ADLSTEVQQLQAIVSQLASGSNDLSTQAASGITSLKSGLSKIGEMQSGVDALAAGAHKLY 867

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
            G   L +   +           A    +             +    S  +    +    
Sbjct: 868 TGSNSLYSGLSEGMAGALALSQGANQVNSG---------ASAVASGASQVNSGAGQVNSG 918

Query: 429 FNHISESYSNTVGVNLQEELSF 450
              ++       GV+   +L+ 
Sbjct: 919 AGQLATGL--ASGVSGAAQLAN 938


>gi|325567533|ref|ZP_08144200.1| flagellar basal-body rod protein FlgC [Enterococcus casseliflavus
          ATCC 12755]
 gi|325158966|gb|EGC71112.1| flagellar basal-body rod protein FlgC [Enterococcus casseliflavus
          ATCC 12755]
          Length = 138

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 10/33 (30%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN 33
          M +        +       +  +I  NI N + 
Sbjct: 1  MGIFNGLTINASGLALERLKLDTISSNIANVNT 33


>gi|295690698|ref|YP_003594391.1| flagellar basal-body rod protein FlgC [Caulobacter segnis ATCC
          21756]
 gi|295432601|gb|ADG11773.1| flagellar basal-body rod protein FlgC [Caulobacter segnis ATCC
          21756]
          Length = 139

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 8/54 (14%)

Query: 14 CNNASQQFASIVRNIENAD----NKN---YVRRDTMTT-ISPENVTVVTQRSEN 59
                +   I  NI NA+          Y R+  +      +    V     +
Sbjct: 19 LRAQQGRMRVIAENIANANSTATTAGGDPYRRQLPIFRPTKVQGAEGVQMVRVD 72


>gi|15639387|ref|NP_218836.1| flagellar basal-body rod protein (flgB) [Treponema pallidum
          subsp. pallidum str. Nichols]
 gi|189025629|ref|YP_001933401.1| flagellar basal-body rod protein [Treponema pallidum subsp.
          pallidum SS14]
 gi|3322679|gb|AAC65384.1| flagellar basal-body rod protein (flgB) [Treponema pallidum
          subsp. pallidum str. Nichols]
 gi|189018204|gb|ACD70822.1| flagellar basal-body rod protein [Treponema pallidum subsp.
          pallidum SS14]
 gi|291059786|gb|ADD72521.1| flagellar basal-body rod protein FlgB [Treponema pallidum subsp.
          pallidum str. Chicago]
          Length = 136

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
             +  + ++     N+ NA+   + R D     
Sbjct: 13 RALDVNALRYEVTANNLANAEVPGFKRTDVNFEA 46


>gi|254702556|ref|ZP_05164384.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str.
           686]
 gi|261753134|ref|ZP_05996843.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str.
           686]
 gi|261742887|gb|EEY30813.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str.
           686]
          Length = 243

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 5/124 (4%), Positives = 26/124 (20%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ NA    +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|17548761|ref|NP_522101.1| hemagglutinin-related protein [Ralstonia solanacearum GMI1000]
 gi|17431010|emb|CAD17691.1| probable hemagglutinin-related protein [Ralstonia solanacearum
           GMI1000]
          Length = 3552

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 41/442 (9%), Positives = 94/442 (21%), Gaps = 19/442 (4%)

Query: 12  NICNNASQQFASIVRNIENADNKNYV-------------RRDTMTTISPENVTVVTQRSE 58
           +    A Q  A    N+ ++                         ++S     V    + 
Sbjct: 372 SGTLAAQQNLAVNAHNVASSGTLGAGVNSDGSLAHAGDLSVVAGGSMSATGQNVAGGNAT 431

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
            +     +  + +SA G   L      L    +          +    L +     +   
Sbjct: 432 LQGASVNLAGSQTSANGNLSLNAQTGNLDLTGATASAGGALSANAQGALINDRGHLASQG 491

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
           +  I   ++ +   ++V     SA     +             N      + T  + A  
Sbjct: 492 ATAITAGSLSNQNGQIVSQNALSANIAGALANQGGTLQAAGALNANAGSLDNTAGHIASL 551

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
                       L          +  + +      N+  +    +          +    
Sbjct: 552 NTDGLNLTTTGRLTNAQGGTIGGNGNVTVQAGQLTNSSSISAVQNLGISTAQSLANAGTL 611

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             N  T  S    +   G  ++S Q + V    +       +S   +  NQL   A  L+
Sbjct: 612 AANGNTTVSAGTTLTNAGGTIASGQRTNVSAATLD------NSAGTLTGNQLALAAANLM 665

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
                          +      D            ++         R   +    G    
Sbjct: 666 NRNGSITQSGTGPIMIGVSGTLDNTSGSIQTNSADLALAPATLINDRGTITDSGTGTLSV 725

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                +        +           N      A     + +     ++ G++       
Sbjct: 726 TTGNLSNNGGTIATNGALDVQAGAVSNQGGKLSAQSQATLNVASLDNSAGGYVGAQGVAI 785

Query: 419 HDLHMKSQVVFNHISESYSNTV 440
            D    +       +       
Sbjct: 786 TDQGALNNAGGTVAASGALTVS 807


>gi|86146157|ref|ZP_01064483.1| flagellar basal body rod protein [Vibrio sp. MED222]
 gi|218708802|ref|YP_002416423.1| flagellar basal body rod protein FlgC [Vibrio splendidus LGP32]
 gi|85836104|gb|EAQ54236.1| flagellar basal body rod protein [Vibrio sp. MED222]
 gi|218321821|emb|CAV17789.1| Polar flagellar FlgC [Vibrio splendidus LGP32]
          Length = 137

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51


>gi|207728344|ref|YP_002256738.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum
           MolK2]
 gi|207739739|ref|YP_002258132.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum
           IPO1609]
 gi|206591590|emb|CAQ57202.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum
           MolK2]
 gi|206593121|emb|CAQ60027.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum
           IPO1609]
          Length = 168

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTT------ISPE 48
           MSL  V + A +     S++   +  N+ NA++        Y  +  + +          
Sbjct: 34  MSLFKVMDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFSPEQGTDGYAT 93

Query: 49  NVTVVTQ 55
            V+V   
Sbjct: 94  GVSVDGV 100


>gi|117928046|ref|YP_872597.1| flagellar basal-body rod protein [Acidothermus cellulolyticus 11B]
 gi|117648509|gb|ABK52611.1| flagellar basal-body rod protein [Acidothermus cellulolyticus 11B]
          Length = 125

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 3/111 (2%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
                  +    +   +  A    N+ N D  N++ +  +   S +           +  
Sbjct: 17  TTQALEVSIAGLSARQRALA---DNVANIDTPNFLAKRVVFEDSLKAAIASGDPGAAQIT 73

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
               L   ++      L +   +  +          + T     L+ ++ S
Sbjct: 74  TLTSLEPTNTNGNNVNLDEETVSAIDTGLKYQTDIEALTAKYQLLKTAIGS 124


>gi|294500942|ref|YP_003564642.1| flagellar basal-body rod protein FlgB [Bacillus megaterium QM
          B1551]
 gi|294350879|gb|ADE71208.1| flagellar basal-body rod protein FlgB [Bacillus megaterium QM
          B1551]
          Length = 129

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 1  MSLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          MSL +  F   +N  + ASQ+  +I +NI N D  NY  +    T 
Sbjct: 1  MSLFSTTFQTIENGISYASQKQQTIAQNIANVDTPNYKSKTVSRTS 46


>gi|189426356|ref|YP_001953533.1| flagellar basal-body rod protein FlgB [Geobacter lovleyi SZ]
 gi|189422615|gb|ACD97013.1| flagellar basal-body rod protein FlgB [Geobacter lovleyi SZ]
          Length = 146

 Score = 38.5 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 1/42 (2%)

Query: 22 ASIVRNIENADNKNYVRRDTMT-TISPENVTVVTQRSENKNM 62
            I  NI NA+   Y  +           V   T R  +   
Sbjct: 26 NLISSNIANAETPGYTPKSLEFEQQLQSAVKKSTTRRGDSQF 67


>gi|188590007|ref|YP_001920227.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500288|gb|ACD53424.1| flagellar hook-basal body complex protein [Clostridium botulinum E3
           str. Alaska E43]
          Length = 257

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++ +    T  VN  EEL  L+++++ +  + K +   D+ +Q    
Sbjct: 205 NVRQGVLETSNVNPTEELVKLMEIKRQFETNQKFVSMQDETVQKAAN 251


>gi|229917023|ref|YP_002885669.1| flagellar basal body rod protein [Exiguobacterium sp. AT1b]
 gi|229468452|gb|ACQ70224.1| flagellar basal body rod protein [Exiguobacterium sp. AT1b]
          Length = 257

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 29/79 (36%)

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
            +      TL  Y  + +  LE+  +D              + + +     VNL + ++ 
Sbjct: 166 TSLGQNVATLGAYQIDDLTTLEQVGNDWRVTGDAPAPAQVEVLQGFIEEANVNLDQTMAD 225

Query: 451 LIKVEQSYNISNKLIMFTD 469
           L+   + +  + K++   D
Sbjct: 226 LMMTYRQFEANQKVVQAYD 244



 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 30/129 (23%), Gaps = 23/129 (17%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +L     A    N   +Q   +  N+ N     +   D               RS  + +
Sbjct: 1   MLRGLYTAAGAMNALQRQQEILSNNLGNVRTPGFKASD------------GVVRSFPEML 48

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
             +V +  ++               +               + +      + S + ++  
Sbjct: 49  LAQVSNPDNAKS-----------RVKGEVGTLSMGVYLQETMPRFSAGSITESGSPTDLY 97

Query: 123 LGKTVIDNA 131
           L        
Sbjct: 98  LKAPTDFTG 106


>gi|49089306|gb|AAT51668.1| PA1081 [synthetic construct]
          Length = 250

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/238 (6%), Positives = 53/238 (22%), Gaps = 16/238 (6%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSENK 60
              + +  +  +    +   N+ N     +       R   ++  S              
Sbjct: 5   LYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVSGDSFPARVFAMSERPGT 64

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
           +     L    + +        F A++          +      + +        +    
Sbjct: 65  DFSHGSLQETGNELDIAIDGDGFVAVQ------APDGSEAYVRTAGMHIDALGMLRTGDG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN----LRRFLSELTVVNDA 176
             +       A    +           IRA  +    + + +    +   L ++    D 
Sbjct: 119 LPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQMEKGTDG 178

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
           +        +     D    ++    E   ++ +      + +       +      +
Sbjct: 179 LLHYKPQPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAE 236


>gi|330502731|ref|YP_004379600.1| flagellar basal body rod protein FlgB [Pseudomonas mendocina
          NK-01]
 gi|328917017|gb|AEB57848.1| flagellar basal body rod protein FlgB [Pseudomonas mendocina
          NK-01]
          Length = 135

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD      
Sbjct: 1  MSINFGRALGIHEQALGFRAQRAEVLSNNIANADTPNYKARDLDFASV 48


>gi|296283227|ref|ZP_06861225.1| flagellar basal-body rod protein FlgF [Citromicrobium
          bathyomarinum JL354]
          Length = 248

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 4/29 (13%), Positives = 9/29 (31%)

Query: 15 NNASQQFASIVRNIENADNKNYVRRDTMT 43
              ++   +  N+ N     + R   M 
Sbjct: 13 QALRRRMDIVANNLANTSTVGFRREQPMF 41


>gi|229149945|ref|ZP_04278173.1| Flagellar basal-body rod protein [Bacillus cereus m1550]
 gi|228633626|gb|EEK90227.1| Flagellar basal-body rod protein [Bacillus cereus m1550]
          Length = 147

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 32 NTVSSNIANANTPGYKAQDVTFAE 55


>gi|188592115|ref|YP_001796713.1| flgc: flagellar basal-body rod protein [Cupriavidus taiwanensis LMG
           19424]
 gi|170938489|emb|CAP63476.1| FlgC: Flagellar basal-body rod protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 122

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            VN  EE+  +I   +SY  + +++     M+
Sbjct: 83  NVNPVEEMVNMISASRSYQANVEVLNTAKNMM 114


>gi|186477698|ref|YP_001859168.1| flagellar basal body rod protein FlgF [Burkholderia phymatum
           STM815]
 gi|184194157|gb|ACC72122.1| flagellar basal-body rod protein FlgF [Burkholderia phymatum
           STM815]
          Length = 252

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/212 (7%), Positives = 52/212 (24%), Gaps = 1/212 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +    A +Q A +  N+ N     +  +       P          ++   
Sbjct: 1   MDRLIYTAMSGATQALEQQAVVANNLANTSTTGFKAQLATFRAVPM-AFGDGSTIQDDTT 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              VL +   A      +Q      ++      + +  T    +      +   + +  +
Sbjct: 60  RTFVLSSTPGADYTPGPIQQTGNPLDVAIQGPGWLSVLTPDGEEAYTRAGNLHVDENGQL 119

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +    +               +V   +      +          L +   + +       
Sbjct: 120 VTANNLPVVGGGGPVAVPPGAQVTIGKDGTVSALMPGDPATTIALVDQLKLVNPAPGALK 179

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNN 214
              D     +  +      + ++    +  +N
Sbjct: 180 RGDDGLFHTNDGNPADADPAVVVAAGALEGSN 211


>gi|301646811|ref|ZP_07246663.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 146-1]
 gi|307136856|ref|ZP_07496212.1| flagellar basal body rod protein FlgC [Escherichia coli H736]
 gi|331640711|ref|ZP_08341858.1| flagellar basal-body rod protein FlgC [Escherichia coli H736]
 gi|301075004|gb|EFK89810.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 146-1]
 gi|315616829|gb|EFU97446.1| flagellar basal-body rod protein FlgC [Escherichia coli 3431]
 gi|331040085|gb|EGI12293.1| flagellar basal-body rod protein FlgC [Escherichia coli H736]
          Length = 143

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTIRLNTVASNLANAEAPAGSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAIDAASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|119715008|ref|YP_921973.1| flagellar basal-body rod protein [Nocardioides sp. JS614]
 gi|119535669|gb|ABL80286.1| flagellar basal-body rod protein [Nocardioides sp. JS614]
          Length = 130

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 7/66 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMT-------TISPENVTVV 53
          M        A +          ++  NI N +      ++          +     V V 
Sbjct: 1  MGAFDTLTIAGSSMGVHQTWLDTLASNIANVNTVTPTSQNAFQAQMLIVRSAVGGGVEVA 60

Query: 54 TQRSEN 59
               +
Sbjct: 61 GLAQSD 66


>gi|228926808|ref|ZP_04089876.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229090737|ref|ZP_04221970.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-42]
 gi|228692679|gb|EEL46405.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-42]
 gi|228832921|gb|EEM78490.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 249

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/236 (7%), Positives = 61/236 (25%), Gaps = 8/236 (3%)

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
               +   T+      +   V           G +  +  +  +VVP   +       + 
Sbjct: 14  SNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNIQ 73

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + + +    +   +      F+     +         +       Q  S    + +    
Sbjct: 74  MTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMGENNER 133

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSD 417
            +        +     L +    +         V     N  +    ++           
Sbjct: 134 IRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLVQRENKSF-----TLAEG 188

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +         +   +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 189 NIADLPNGTGL---VKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDKIYE 241



 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 52/222 (23%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +SA      L    A           N +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +     A     I    +      +   +V   
Sbjct: 120 TTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLVQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  D  +   ++   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMT 221


>gi|88811799|ref|ZP_01127053.1| flagellar basal body rod protein [Nitrococcus mobilis Nb-231]
 gi|88791190|gb|EAR22303.1| flagellar basal body rod protein [Nitrococcus mobilis Nb-231]
          Length = 139

 Score = 38.5 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           M+L  +F+ A +  +  + +      N+ NAD         Y  R  +   +        
Sbjct: 3   MALFDIFDVAGSAMSAQALRLNITASNMANADTVASTPERAYKARQPVFAAALNTAHDTV 62

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                  +  ++    +S+   + L Q    L +        N +    +  +  +  SY
Sbjct: 63  -----SAVPVQLRGVVTSSAAAEPLYQPNNPLADADGYVYRSNVNTVEAMVNMISASRSY 117

Query: 115 SKN 117
             N
Sbjct: 118 QNN 120


>gi|256014918|ref|YP_003104927.1| flagellar basal-body rod protein FlgF [Brucella microti CCM 4915]
 gi|255997578|gb|ACU49265.1| flagellar basal-body rod protein FlgF [Brucella microti CCM 4915]
          Length = 243

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 4/124 (3%), Positives = 25/124 (20%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ N     +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|228952123|ref|ZP_04114218.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229043497|ref|ZP_04191207.1| Flagellar basal-body rod protein [Bacillus cereus AH676]
 gi|229109200|ref|ZP_04238799.1| Flagellar basal-body rod protein [Bacillus cereus Rock1-15]
 gi|229127069|ref|ZP_04256068.1| Flagellar basal-body rod protein [Bacillus cereus BDRD-Cer4]
 gi|229144355|ref|ZP_04272761.1| Flagellar basal-body rod protein [Bacillus cereus BDRD-ST24]
 gi|228639142|gb|EEK95566.1| Flagellar basal-body rod protein [Bacillus cereus BDRD-ST24]
 gi|228656422|gb|EEL12261.1| Flagellar basal-body rod protein [Bacillus cereus BDRD-Cer4]
 gi|228674210|gb|EEL29455.1| Flagellar basal-body rod protein [Bacillus cereus Rock1-15]
 gi|228725875|gb|EEL77122.1| Flagellar basal-body rod protein [Bacillus cereus AH676]
 gi|228807655|gb|EEM54179.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 147

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 32 NTVSSNIANANTPGYKAQDVTFAE 55


>gi|153834459|ref|ZP_01987126.1| flagellar basal-body rod protein FlgC [Vibrio harveyi HY01]
 gi|163802605|ref|ZP_02196497.1| flagellar basal-body rod protein C [Vibrio sp. AND4]
 gi|148869155|gb|EDL68187.1| flagellar basal-body rod protein FlgC [Vibrio harveyi HY01]
 gi|159173688|gb|EDP58507.1| flagellar basal-body rod protein C [Vibrio sp. AND4]
          Length = 137

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45
          MSL  VFN   +  +  S +  +   N+ NAD+ +      Y  R  +   
Sbjct: 1  MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGA 51


>gi|73539447|ref|YP_299814.1| flagellar basal body rod protein FlgB [Ralstonia eutropha JMP134]
 gi|72122784|gb|AAZ64970.1| Flagellar basal-body rod protein FlgB [Ralstonia eutropha JMP134]
          Length = 135

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 12 NICNNASQQFA-------SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
          +      +  +        I  NI +AD   Y  RD   + +        +R +  ++  
Sbjct: 7  SALRFQQEALSLRTQRQSVIASNIAHADTPGYKARDFDFSSTLAQTMERGRRPDGVSLST 66

Query: 65 KVLH 68
            + 
Sbjct: 67 TSVR 70


>gi|220932528|ref|YP_002509436.1| flagellar basal-body rod protein FlgB [Halothermothrix orenii H
          168]
 gi|219993838|gb|ACL70441.1| flagellar basal-body rod protein FlgB [Halothermothrix orenii H
          168]
          Length = 131

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            + AS++  ++  NI N D  NY R+D     +
Sbjct: 11 GLDGASKRHRALADNIANVDTPNYKRKDVDFVST 44


>gi|83646789|ref|YP_435224.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396]
 gi|83634832|gb|ABC30799.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396]
          Length = 235

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
            +      ++      ++     + +SY     VN  EE+  L+++ + Y +S+ ++   
Sbjct: 162 SYAGAGLFENPTKQAPTEATGAQVMQSYLEMSNVNTMEEIVRLVELTRHYQLSHNVLKAY 221

Query: 469 DKMLQTLLE 477
           D  + + + 
Sbjct: 222 DGSIDSAIS 230


>gi|172058673|ref|YP_001815133.1| flagellar basal body rod protein [Exiguobacterium sibiricum 255-15]
 gi|171991194|gb|ACB62116.1| flagellar basal body rod protein [Exiguobacterium sibiricum 255-15]
          Length = 262

 Score = 38.5 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 42/208 (20%), Gaps = 25/208 (12%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQR 56
           +L     A        +Q   +  N+ NA    +          P        V   +  
Sbjct: 1   MLRGMYTASGAMQALQRQQEMLSNNLANARTPGFRADQASLRTFPEMMIQQSGVNEQSGV 60

Query: 57  SENK----------------NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYN--N 98
                               N     +    +A   Q       AL  +  AD       
Sbjct: 61  RSRGTVGKLATGVFMQAATPNFALGSITETGNATDLQISSLEGAALFTIRHADPATGEEE 120

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV-QNFNTSAREVQKIRADADKEIE 157
           +      +     +   +    D++          V      ++   V      A   + 
Sbjct: 121 TLYTTNGQFAVGQDGLLRTTENDLVLGDAGQPLNVVNEDFTVSADGAVTDGNGQAIGNLG 180

Query: 158 LEISNLRRFLSELTVVNDAIKFKTASKH 185
           L ++N    L                  
Sbjct: 181 LVVTNQPETLERTGNGLFRSPDALNGGA 208


>gi|228920482|ref|ZP_04083827.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839112|gb|EEM84408.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 249

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 186 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 241



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 51/222 (22%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +SA      L    A           + +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +           I    +      +   +V   
Sbjct: 120 TSSGAFVIGENNERIRIPEGAKVAVQADGTLYDEVTQNNIGRLQTKTVDAETNARLVQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 221


>gi|83814873|ref|YP_446719.1| flagella basal body rod protein [Salinibacter ruber DSM 13855]
 gi|83756267|gb|ABC44380.1| Flagella basal body rod protein [Salinibacter ruber DSM 13855]
          Length = 137

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
          +N  +  +Q+  +   N+ N D   Y R             +   R  + ++ ++ 
Sbjct: 35 RNAMSAYAQRRRAASSNLANIDTPGYDRMSVSFEE-----ELQDVRRHSGSLREQS 85


>gi|304392834|ref|ZP_07374766.1| Ig family protein [Ahrensia sp. R2A130]
 gi|303295002|gb|EFL89370.1| Ig family protein [Ahrensia sp. R2A130]
          Length = 4355

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/370 (8%), Positives = 87/370 (23%), Gaps = 8/370 (2%)

Query: 29  ENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88
            N   +         +I    +T+V+            ++             S   ++ 
Sbjct: 333 ANVGTEGADGARVAESIITGTITLVSDDVTIDGFEFDTVNTSIRDGATGTDSYSNITIQN 392

Query: 89  MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
                           ++   +      + +      T+  N    +   + +A  +  I
Sbjct: 393 NDFV------GLDADGNQFIANGFGLGGSSTAVASNWTITQNNFTGLNGNDATAVTLFNI 446

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
                 +  ++  +          ++       +  + +   +D +       +   G+ 
Sbjct: 447 DGVTFTDNVIDHDDAGAGGRRGVNLDGTTDVTFSGNNISLGLVDPKGTQADFDAGAYGLQ 506

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
             +       +  + G          +     +   +  ++N        +    G+  P
Sbjct: 507 VSMSERGSSDISVT-GNIFDGGYDGIVTLGNGDLSNLVIDNNDFTNSFFAIRPQAGTNGP 565

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
            G I  L  I ++     +  L  +      +++  D  +          +         
Sbjct: 566 AGSINGL-TITNNTFDDQEALLGAVRLTGADAYTGVDISSNTFIGAGSNILLAADSIELA 624

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
               G      +     ++     DG         N   L G  D           ++I 
Sbjct: 625 GPLVGSQNADRLQGGAGNDFIDGGDGDDRITLGDGNDVGLGGNGDDTIIAGMGGGNDYID 684

Query: 389 DPVAGINTNV 398
               G   + 
Sbjct: 685 GGNNGALGDT 694


>gi|188579865|ref|YP_001923310.1| flagellar basal body rod protein FlgC [Methylobacterium populi
          BJ001]
 gi|179343363|gb|ACB78775.1| flagellar basal-body rod protein FlgC [Methylobacterium populi
          BJ001]
          Length = 138

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMT 43
          LL+    A       S +   +  N+ NA +         Y R+    
Sbjct: 5  LLSASRLASAGLEAQSLRMRVVSENLANAQSTGASPGADPYARKTVTF 52


>gi|56551506|ref|YP_162345.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761150|ref|ZP_04759239.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752887|ref|YP_003225780.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543080|gb|AAV89234.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374769|gb|EER64230.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552250|gb|ACV75196.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 249

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/199 (8%), Positives = 40/199 (20%), Gaps = 12/199 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58
           +  +   + +      +Q  +   N+ N +   + +  +           +   +  +  
Sbjct: 1   MDRLLYTSLSGMRATMRQQIATASNLSNTETPGFKKELSTQAAFWLRGGNSSRAMASQGI 60

Query: 59  NKNMFDK-VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                 K  +      +       S  A++          +        L+ +      N
Sbjct: 61  YSADLQKAEVQQTGRDLDLAMGGDSMIAVQ------AEDGSEAYTRRGDLQVTNSGVLVN 114

Query: 118 LSEDILGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                L                      V  I    +      I  ++         N  
Sbjct: 115 GEGHPLVGERGPITIGAADKITIDKDGTVYVILPGQNPVQPEAIDQIKLVSPSTQPRNRI 174

Query: 177 IKFKTASKHDAHDFLDQRD 195
            K               RD
Sbjct: 175 AKGLDGLFRVVDGGTLNRD 193


>gi|312962296|ref|ZP_07776787.1| flagellar basal-body rod protein F [Pseudomonas fluorescens WH6]
 gi|311283223|gb|EFQ61813.1| flagellar basal-body rod protein F [Pseudomonas fluorescens WH6]
          Length = 246

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/223 (8%), Positives = 49/223 (21%), Gaps = 17/223 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +     +      +        + A++                 + +        +  
Sbjct: 63  ATDFSPGAMIETGRDLDVAVNGDGWMAVQ------TPDGGEAYVRSASMNVDALGVLRAG 116

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q     A     IRA      +  E+  ++    +L  +N  +
Sbjct: 117 NGMPIMGNGGPIAVPPQQKIEVGADGTISIRAMGEGPRVMAEVDRIKLVQPDLKNMNKGL 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                +K       D    L     +   ++ +      + + 
Sbjct: 177 DGTIHTKDGKPAVADASVKLTSGFLQASNVNAVEEMTAVLALS 219


>gi|299538000|ref|ZP_07051286.1| flagellar basal-body rod protein [Lysinibacillus fusiformis ZC1]
 gi|298726582|gb|EFI67171.1| flagellar basal-body rod protein [Lysinibacillus fusiformis ZC1]
          Length = 277

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/263 (8%), Positives = 69/263 (26%), Gaps = 11/263 (4%)

Query: 226 TLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPI 285
           T   T  R       N     +         +    +   +          Q   +    
Sbjct: 10  TGMITQQRRTELLTNNLSNANTPGFKADQSTIRSFPDMLMSSIGKTNAPAHQQAGAEYMS 69

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
               L+    +     +       N++    + + +G    +     G       +P   
Sbjct: 70  QVGALNTGTYLQETLPNYIQGQIYNTDFTTDMALINGNLPQNEDGVTGSIFFRLEHPAGG 129

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
              +   +     + +L N + L    D         +   + +  A    N  +     
Sbjct: 130 EAYTRNGNFTLDGQGYLVNGQGLYVLNDAGQRIQLPNDDFRLDESGAIFVNNQQVARVGV 189

Query: 406 NS-----------IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           +             G +     ++      +  V   + +++     V+    ++ L+  
Sbjct: 190 SFATNPNMLQKQDNGLIRTENGENLPTAYGANGVSFTLRQNFLEGSNVDSGRTMTDLMTA 249

Query: 455 EQSYNISNKLIMFTDKMLQTLLE 477
            +++  + K++   D+ ++  + 
Sbjct: 250 YRAFEANQKVLQAYDRSMEKAVN 272



 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/264 (8%), Positives = 65/264 (24%), Gaps = 20/264 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +   F           ++   +  N+ NA+   +       +                +M
Sbjct: 1   MFKGFYTVATGMITQQRRTELLTNNLSNANTPGFK---ADQSTI----------RSFPDM 47

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +   ++   QQ   +    +        +        +          +   ++  
Sbjct: 48  LMSSIGKTNAPAHQQAGAEYMSQV-----GALNTGTYLQETLPNYIQGQIYNTDFTTDMA 102

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           L    +   E+ V        E         +     +      ++   +       +  
Sbjct: 103 LINGNLPQNEDGVTGSIFFRLEHPAGGEAYTRNGNFTLDGQGYLVNGQGLYVLNDAGQRI 162

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
              +    LD+   +     ++  +      N +M+    +G  L  T   +       +
Sbjct: 163 QLPNDDFRLDESGAIFVNNQQVARVGVSFATNPNMLQKQDNG--LIRTENGENLPTAYGA 220

Query: 243 YTVTSESNPIFIDGVVVSSNQGSA 266
             V+      F++G  V S +   
Sbjct: 221 NGVSFTLRQNFLEGSNVDSGRTMT 244


>gi|254786639|ref|YP_003074068.1| Ig domain-containing protein [Teredinibacter turnerae T7901]
 gi|237685029|gb|ACR12293.1| Ig domain protein [Teredinibacter turnerae T7901]
          Length = 2956

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/338 (10%), Positives = 92/338 (27%), Gaps = 6/338 (1%)

Query: 110  SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
               + +    +      ++  +   +    +++       +     +   I+ +  + S 
Sbjct: 1243 DTTNLAVADVDSTSVMVLLALSGGELPAPASTSEVAISQLSSGAITLTGTITAINTYFSS 1302

Query: 170  LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
               +             A   +  RD     ++ +  +   +   ND     +D  T  E
Sbjct: 1303 AAAIKFRGSENVFGTAAASLSVAARDTDGSPLASLATVPIDIAAVNDAPNAVADSVTTQE 1362

Query: 230  TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                 I     ++  V    NP  +   + ++   S      I       D         
Sbjct: 1363 DTAVQILVLANDT-DVDDTINPASVVATLPANGTASVDTASGIVTYTPNADFTGTDTFTY 1421

Query: 290  LDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPS 349
            +       + + +E   +     + P           D  +   +           S   
Sbjct: 1422 MVHDLSGDVSAATEVTVVVLPVNDAPVAVADSASTPEDVTIDIDVLANDTDVDANDSFDL 1481

Query: 350  FLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
                  ++      +V   +       ++  S + ++     AG+ +NV ++      + 
Sbjct: 1482 SSLTITALPAHGTASVVAGSIRYIPATNFNGSDSLSYSVTDAAGLRSNVAIVVINVTGVN 1541

Query: 410  WLEKNRSDSHDLHMKSQVVFNHISE-----SYSNTVGV 442
             L    +++  L   +QVV N ++         N   V
Sbjct: 1542 DLPVAVNEAASLDEDTQVVVNVLTNDSDVDGALNLSTV 1579


>gi|4378857|gb|AAD19725.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 249

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/199 (8%), Positives = 41/199 (20%), Gaps = 12/199 (6%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----SPENVTVVTQRSE 58
           +  +   + +      +Q  +   N+ N +   + +  +           +   +  +  
Sbjct: 1   MDRLLYTSLSGMRATMRQQIATASNLSNTETPGFKKELSTQAAFWLRGGNSSRAMASQGI 60

Query: 59  NKNMFDK-VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN 117
                 K  +      +       S  A++          +        L+ +      N
Sbjct: 61  YSADLQKAEVQQTGRDLDLAMGGDSMIAVQ------AEDGSEAYTRRGDLQVTNSGVLVN 114

Query: 118 LSEDILGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
                L                      V  I    +      I  ++ F       N  
Sbjct: 115 GEGHPLVGERGPITIGAADKITIDKDGTVYVILPGQNPVQPEAIDQIKLFSPSTQPRNRI 174

Query: 177 IKFKTASKHDAHDFLDQRD 195
            K               RD
Sbjct: 175 AKGLDGLFRVVDGGTLNRD 193


>gi|23499891|ref|NP_699331.1| flagellar basal body rod protein FlgF [Brucella suis 1330]
 gi|148558748|ref|YP_001257194.1| flagellar basal body rod protein FlgF [Brucella ovis ATCC 25840]
 gi|163844323|ref|YP_001621978.1| flagellar basal body rod protein FlgF [Brucella suis ATCC 23445]
 gi|225628603|ref|ZP_03786637.1| flagellar basal body rod protein FlgF [Brucella ceti str. Cudo]
 gi|254699439|ref|ZP_05161267.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str.
           513]
 gi|254706314|ref|ZP_05168142.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           M163/99/10]
 gi|254711394|ref|ZP_05173205.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           B2/94]
 gi|254711993|ref|ZP_05173804.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1]
 gi|254715063|ref|ZP_05176874.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1]
 gi|256029976|ref|ZP_05443590.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           M292/94/1]
 gi|256158141|ref|ZP_05456057.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1]
 gi|256252908|ref|ZP_05458444.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94]
 gi|261216770|ref|ZP_05931051.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1]
 gi|261219997|ref|ZP_05934278.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94]
 gi|261313761|ref|ZP_05952958.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           M163/99/10]
 gi|261319000|ref|ZP_05958197.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           B2/94]
 gi|261319637|ref|ZP_05958834.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1]
 gi|261749890|ref|ZP_05993599.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str.
           513]
 gi|265986997|ref|ZP_06099554.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           M292/94/1]
 gi|265996658|ref|ZP_06109215.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1]
 gi|294853152|ref|ZP_06793824.1| flagellar basal-body rod protein FlgF [Brucella sp. NVSL 07-0026]
 gi|23463466|gb|AAN33336.1| flagellar basal-body rod protein FlgF [Brucella suis 1330]
 gi|148370033|gb|ABQ62905.1| flagellar basal-body rod protein FlgF [Brucella ovis ATCC 25840]
 gi|163675046|gb|ABY39156.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|225616449|gb|EEH13497.1| flagellar basal body rod protein FlgF [Brucella ceti str. Cudo]
 gi|260918581|gb|EEX85234.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94]
 gi|260921859|gb|EEX88427.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1]
 gi|261292327|gb|EEX95823.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1]
 gi|261298223|gb|EEY01720.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           B2/94]
 gi|261302787|gb|EEY06284.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           M163/99/10]
 gi|261739643|gb|EEY27569.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str.
           513]
 gi|262550955|gb|EEZ07116.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1]
 gi|264659194|gb|EEZ29455.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis
           M292/94/1]
 gi|294818807|gb|EFG35807.1| flagellar basal-body rod protein FlgF [Brucella sp. NVSL 07-0026]
          Length = 243

 Score = 38.5 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 5/124 (4%), Positives = 26/124 (20%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ NA    +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|124268253|ref|YP_001022257.1| flagellar basal body and hook protein [Methylibium petroleiphilum
           PM1]
 gi|124261028|gb|ABM96022.1| flagellar basal body and hook protein [Methylibium petroleiphilum
           PM1]
          Length = 242

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/142 (9%), Positives = 31/142 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   + +      Q+  ++  N+ NA    +          P      + R  +   
Sbjct: 1   MDRMIYLSMSGAKATMQRQETLANNLANASTTGFRAELQAFRAVPVRGDGASTRVYSLET 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                          R L         ++            +  L+   E   K      
Sbjct: 61  TTGYDPTPGPMAATGRALDVAMQGNAWLAVQGLDGTEAYTRMGSLQVDAEGTLKTSGGLT 120

Query: 123 LGKTVIDNAEEVVQNFNTSARE 144
           +       A     +   +A  
Sbjct: 121 VLGDGGPIALPANSSPQIAADG 142


>gi|194439566|ref|ZP_03071639.1| flagellin [Escherichia coli 101-1]
 gi|301327714|ref|ZP_07220919.1| bacterial flagellin [Escherichia coli MS 78-1]
 gi|6941880|gb|AAF32259.1|AF169320_1 flagellin [Escherichia coli]
 gi|194421475|gb|EDX37489.1| flagellin [Escherichia coli 101-1]
 gi|300845714|gb|EFK73474.1| bacterial flagellin [Escherichia coli MS 78-1]
 gi|323972714|gb|EGB67915.1| flagellin [Escherichia coli TA007]
          Length = 420

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/404 (8%), Positives = 119/404 (29%), Gaps = 11/404 (2%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                + + ++  +     + +     + +    L+   + DD    +  +  +     L
Sbjct: 2   AQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              ++N ++       I  A+      +     +Q++R +   +     ++     S   
Sbjct: 62  TQAARNAND------GISVAQTTEGALSEINNNLQRVR-ELTVQATTGTNSESDLSSIQD 114

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   ++                     K++  +G +       D+    S    L    
Sbjct: 115 EIKSRLEEIDRVSSQTQFNGVNVLAKDGKMNIQVGANDGQTITIDLKKIDSSTLNLSSFD 174

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++     +  T+  +      D    +S     +   +      + D+    + +   
Sbjct: 175 ATNLGTSVKDGATINKQVAVGAGDFKDKASGSLGTLKLVEKDGKYYVNDTTNSKYYDAEV 234

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + ++  I  F+  +           +        LD    +     +    +  ++   +
Sbjct: 235 DTSKGEIN-FNSTNESGTPPTAATEVTTVGRDVKLDASALKANQSLVVYKDKSGNDAYII 293

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +     + +  +N  N++    L      +   N   DP+  ++  +  ++  R+S+G +
Sbjct: 294 QTKDVTTNQSTFNAANISDAGVLSIGASTTAPSNLTADPLKALDDAIASVDKFRSSLGAV 353

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +     +      +    +       +    +   E+S + K +
Sbjct: 354 QNRLDSAIANLNNTTTNLSEAQSRIQDA---DYATEVSNMSKAQ 394


>gi|296502373|ref|YP_003664073.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis
           BMB171]
 gi|296323425|gb|ADH06353.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis
           BMB171]
          Length = 246

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 183 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 238


>gi|161620214|ref|YP_001594100.1| flagellar basal body rod protein FlgF [Brucella canis ATCC 23365]
 gi|161337025|gb|ABX63329.1| flagellar basal body rod protein [Brucella canis ATCC 23365]
          Length = 233

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/145 (4%), Positives = 30/145 (20%), Gaps = 2/145 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ NA    +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKI 148
                            +  +V  I
Sbjct: 121 LDVGGAPRISSDGAIYQNGVQVGVI 145


>gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod protein [Janthinobacterium sp.
           Marseille]
 gi|151280430|gb|ABR88840.1| FlgF flagellar basal body rod protein [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/103 (6%), Positives = 27/103 (26%), Gaps = 6/103 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR------ 56
           +  +   A +      +Q ++   N+ N     +  +       P     +  R      
Sbjct: 1   MDRLIYTAMSGAKQIMEQQSTTAHNLANVSTTGFRAQMDTFRAVPVVSNGLPTRTFVVDS 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
           +   +     +      +        + A++     + +  + 
Sbjct: 61  TIGTDFRAGPIQQTGRTLDLAVQGPGWLAVERADGTEGYTRSG 103


>gi|15596274|ref|NP_249768.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa
          PAO1]
 gi|107100522|ref|ZP_01364440.1| hypothetical protein PaerPA_01001547 [Pseudomonas aeruginosa
          PACS2]
 gi|116049006|ref|YP_792192.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218892959|ref|YP_002441828.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa
          LESB58]
 gi|254234213|ref|ZP_04927536.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          C3719]
 gi|254239435|ref|ZP_04932757.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          2192]
 gi|296390559|ref|ZP_06880034.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa
          PAb1]
 gi|313106032|ref|ZP_07792291.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          39016]
 gi|9946993|gb|AAG04466.1|AE004539_8 flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          PAO1]
 gi|115584227|gb|ABJ10242.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126166144|gb|EAZ51655.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          C3719]
 gi|126192813|gb|EAZ56876.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          2192]
 gi|218773187|emb|CAW28999.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          LESB58]
 gi|310878793|gb|EFQ37387.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          39016]
          Length = 135

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         Q   +  +Q+   +  N+ NAD  NY  RD      
Sbjct: 1  MSISFDRALGIHQQALSFRAQRAEVLANNLANADTPNYKARDLDFAAV 48


>gi|229132556|ref|ZP_04261405.1| Flagellar basal-body rod protein [Bacillus cereus BDRD-ST196]
 gi|228650902|gb|EEL06888.1| Flagellar basal-body rod protein [Bacillus cereus BDRD-ST196]
          Length = 161

 Score = 38.1 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 46 NTVSSNIANANTPGYKAQDVTFAE 69


>gi|325927876|ref|ZP_08189100.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas
           perforans 91-118]
 gi|325541716|gb|EGD13234.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas
           perforans 91-118]
          Length = 243

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/133 (6%), Positives = 26/133 (19%)

Query: 11  QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAH 70
                 + Q  +++  N+ N D   +      T            R +  ++      + 
Sbjct: 1   MTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFKIQGKGYPSRIDALHVDQGFDRSQ 60

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
                    L         ++      +       +L  +        +   +     + 
Sbjct: 61  GHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHAVLDEGGNP 120

Query: 131 AEEVVQNFNTSAR 143
                        
Sbjct: 121 MTIPPHQAMEIGS 133


>gi|257095358|ref|YP_003168999.1| flagellar basal-body rod protein FlgF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047882|gb|ACV37070.1| flagellar basal-body rod protein FlgF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 249

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 33/148 (22%), Gaps = 16/148 (10%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV------RRDTMTTISPENVTVVTQR 56
           +    + A+      +     + +N+ NA    Y       R   +              
Sbjct: 5   IYTAMSGAKQGLLLQAG----VAQNLANATTVGYRAMENRFRAVPILGSGLATRAFAVDA 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S      +  L +    +      Q + A++                   L+       +
Sbjct: 61  SVANVFQEGALTSTGRPLDVAVRGQGWIAVQ------GPDGREAYTRAGNLKADANGVLQ 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSARE 144
             S   +       A     N   +A  
Sbjct: 115 TSSGLDVLGEGGPIALPPDNNIAIAADG 142


>gi|225849147|ref|YP_002729311.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium
          azorense Az-Fu1]
 gi|225643183|gb|ACN98233.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium
          azorense Az-Fu1]
          Length = 137

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 4/50 (8%), Positives = 13/50 (26%), Gaps = 6/50 (12%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
          +      + +       +      N+ N ++        Y R+  +    
Sbjct: 2  IFKGLEVSVSGMQAERVRIDLSASNLANVNSTRAEDGQPYRRKVPVFEAV 51


>gi|196033292|ref|ZP_03100704.1| putative flagellar basal-body rod protein [Bacillus cereus W]
 gi|195993726|gb|EDX57682.1| putative flagellar basal-body rod protein [Bacillus cereus W]
          Length = 249

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%)

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
                +         V++ +E++ L+  ++  + S +++   DK+ +
Sbjct: 195 NGVGTVKNYMLENSNVDMTKEMADLMTDQKMISASQRVMTSFDKIYE 241



 Score = 36.9 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 50/214 (23%), Gaps = 18/214 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +SA      L    A           N +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSATDF--FLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +     A     I    +      +   ++   
Sbjct: 120 TTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLMQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
            K  T ++ ++ D  +    +   + E   +   
Sbjct: 180 NKSFTLAEGNSADLPNGVGTVKNYMLENSNVDMT 213


>gi|322432998|ref|YP_004210247.1| flagellar basal-body rod protein FlgC [Acidobacterium sp.
          MP5ACTX9]
 gi|321165225|gb|ADW70929.1| flagellar basal-body rod protein FlgC [Acidobacterium sp.
          MP5ACTX9]
          Length = 148

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          M    +   + +  +   Q+   I  N+ NA+  +      + R++ + + +
Sbjct: 1  MGPFDMLQISGSALSAERQRSEVIAANMANAETTHTDTGGPFKRKEVVFSSA 52


>gi|307823529|ref|ZP_07653758.1| flagellar basal-body rod protein FlgC [Methylobacter tundripaludum
           SV96]
 gi|307735514|gb|EFO06362.1| flagellar basal-body rod protein FlgC [Methylobacter tundripaludum
           SV96]
          Length = 138

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML-QTL 475
             VN  EE++ ++   +SY  +  ++    +M+ QTL
Sbjct: 98  SNVNTVEEMANMMSASRSYQNNVDVLNTAKQMMLQTL 134


>gi|256059629|ref|ZP_05449826.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33]
 gi|261323599|ref|ZP_05962796.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33]
 gi|261299579|gb|EEY03076.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33]
          Length = 243

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 5/124 (4%), Positives = 26/124 (20%), Gaps = 2/124 (1%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMF 63
                   +      ++  +I  N+ NA    +    T       +              
Sbjct: 3   NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASDDV--SFATAG 60

Query: 64  DKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123
              +   +  + +           +   +             +++        +++ + +
Sbjct: 61  KSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGNAI 120

Query: 124 GKTV 127
               
Sbjct: 121 LDVG 124


>gi|126653432|ref|ZP_01725528.1| flagellar basal-body rod protein [Bacillus sp. B14905]
 gi|126589788|gb|EAZ83921.1| flagellar basal-body rod protein [Bacillus sp. B14905]
          Length = 210

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/203 (7%), Positives = 47/203 (23%), Gaps = 6/203 (2%)

Query: 275 LLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                   +P +                    +  N + V G            +     
Sbjct: 9   TGTYLQETLPNYIQGQIYSTDFTTDMALIDGNLPQNEDGVSGSIFFRLAHPDGGEAYTRN 68

Query: 335 SETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGI 394
                    Y  N   L       ++      +         +  +           A  
Sbjct: 69  GNFTLDGQGYLVNGQGLYVLNDAGQRIQLPNDDFRLDESGAIYVNNQQVARVGVSYAANP 128

Query: 395 NTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKV 454
           N         +   G +      +      +  V   + +++     V+    ++ L+  
Sbjct: 129 NMLQ------KQDNGLIRTENGVNLPSAYGANGVSFTLRQNFLEGSNVDSGRAMTDLMTA 182

Query: 455 EQSYNISNKLIMFTDKMLQTLLE 477
            +++  + K++   D+ ++  + 
Sbjct: 183 YRAFEANQKVLQAYDRSMEKAVN 205


>gi|17548564|ref|NP_521904.1| flagellar basal-body rod protein FlgC [Ralstonia solanacearum
          GMI1000]
 gi|300693335|ref|YP_003749308.1| flagellar basal-body rod protein flgc (proximal rod protein)
          [Ralstonia solanacearum PSI07]
 gi|17430812|emb|CAD17494.1| probable flagellar basal-body rod protein flgc [Ralstonia
          solanacearum GMI1000]
 gi|299075372|emb|CBJ34667.1| Flagellar basal-body rod protein flgC (proximal rod protein)
          [Ralstonia solanacearum PSI07]
          Length = 135

 Score = 38.1 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTT----ISPENV 50
          MSL  V + A +     S++   +  N+ NA++        Y  +  + +          
Sbjct: 1  MSLFKVMDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFSPEQETDGYAT 60

Query: 51 TVVTQRSENKNMF 63
           V   R     + 
Sbjct: 61 GVSVDRVVEDTVT 73


>gi|228938857|ref|ZP_04101457.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228971738|ref|ZP_04132359.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978347|ref|ZP_04138724.1| Flagellar basal-body rod protein [Bacillus thuringiensis Bt407]
 gi|228781364|gb|EEM29565.1| Flagellar basal-body rod protein [Bacillus thuringiensis Bt407]
 gi|228787828|gb|EEM35786.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228820706|gb|EEM66731.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 147

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 32 NTVSSNIANANTPGYKAQDVTFAE 55


>gi|238923132|ref|YP_002936645.1| flagellar basal body and hook protein [Eubacterium rectale ATCC
           33656]
 gi|238874804|gb|ACR74511.1| flagellar basal body and hook protein [Eubacterium rectale ATCC
           33656]
 gi|291523979|emb|CBK89566.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629]
          Length = 266

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/139 (7%), Positives = 29/139 (20%), Gaps = 28/139 (20%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-----------------------M 42
               A     N  ++   +  N+ N+D   + +  T                        
Sbjct: 4   GLYTAHTGMVNEMKRMDVLANNLANSDTYGFKKEGTTSHSFKNELAIKIKDTSNYGLHKN 63

Query: 43  TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
                  V +    ++             +        + F A+    +      +    
Sbjct: 64  LGSMTYGVHLGETYTDWDE---GSFKVTDNPTDLAIGGKGFFAV--AFTDKSGQTSVKYT 118

Query: 103 YISKLRDSLESYSKNLSED 121
                + + + Y      D
Sbjct: 119 RDGAFKVNADGYLVTADGD 137


>gi|220929471|ref|YP_002506380.1| flagellar basal-body rod protein FlgB [Clostridium cellulolyticum
          H10]
 gi|219999799|gb|ACL76400.1| flagellar basal-body rod protein FlgB [Clostridium cellulolyticum
          H10]
          Length = 137

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            + +  +   I +N+ N D  NY R+D     
Sbjct: 15 SISASWTRNEVISQNLANIDTPNYKRKDVTFEQ 47


>gi|53719259|ref|YP_108245.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
 gi|52209673|emb|CAH35630.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
          Length = 1124

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/434 (5%), Positives = 75/434 (17%), Gaps = 3/434 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 298 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 354

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 355 SKSAITLGGAGVTTPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 414

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 415 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 474

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 475 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 534

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S     +     +N  ++                           +     + 
Sbjct: 535 STANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 594

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 595 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGDNSTASGTNA 654

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
               +N             +   N      +G N+  +    +             +   
Sbjct: 655 SATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASG 714

Query: 422 HMKSQVVFNHISES 435
              +    N  +  
Sbjct: 715 SNSTANGANSTASG 728


>gi|46093563|dbj|BAD14977.1| flagellin [Escherichia coli]
          Length = 516

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 46/493 (9%), Positives = 118/493 (23%), Gaps = 14/493 (2%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIEN---ADNKNYVRRD--------TMTTISPENV 50
           SL +   +  +     S +  +  + I N   A+ K   +             T      
Sbjct: 24  SLSSAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISVAQTTEGALS 83

Query: 51  TVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDS 110
            +       + +  +  +  +S      +          +             +   +++
Sbjct: 84  EINNNLQRVRELTVQATNGTNSDSDLSSIQAEITQRLNEIDRVSGQTQFNGVKVLASKNT 143

Query: 111 LE-SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSE 169
           L      N  E I       N++ +  +     +       +   +     +      + 
Sbjct: 144 LTIQVGANDGETIDINLKEINSQTLGLDKLNVQKAYTPSGENVKVDTTTYTTTYTDGTAI 203

Query: 170 LTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFE 229
                 A     AS     D +       +   +     T   +N+    Y         
Sbjct: 204 KNKAALATDVNNASSIGVSDAIPGDIKFNETSGKYYVAITSTEHNDKNGDYEITVDKDGS 263

Query: 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQ 289
                      +   V +  N          SN  S        A+ +++   V      
Sbjct: 264 AALVAGQSSPKSLEDVGATKNVTAYQVANTQSNTQSVDATVSAGAISELKTGGVDNTAAG 323

Query: 290 LDEMARVLIGSFSEKDPIAG--NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
             ++ ++     + K    G                      +     + +   PQ   N
Sbjct: 324 NAKLVKMTYTDSNGKKVEGGYALKVGDDYYAADYESTSKTVTVRTTSYKDVDGVPQKGLN 383

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                DG + +              D       +  +      V  ++     L    + 
Sbjct: 384 KIGGADGKTETVTIGEKTYAADKLKDHDFSKQATLGEEATTTTVNPLDAIDKALAQVDSL 443

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMF 467
              L   ++             N++S + S     +   E+S + + +        ++  
Sbjct: 444 RSDLGAVQNRFDSTITNLGNTLNNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQ 503

Query: 468 TDKMLQTLLEGVK 480
            ++  Q +L  ++
Sbjct: 504 ANQTTQNVLSLLR 516


>gi|315281334|ref|ZP_07869981.1| flagellar basal body rod protein FlgG [Listeria marthii FSL
          S4-120]
 gi|313615022|gb|EFR88519.1| flagellar basal body rod protein FlgG [Listeria marthii FSL
          S4-120]
          Length = 111

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 7/32 (21%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYV 37
                    N  Q       N+ NA    + 
Sbjct: 3  GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFK 34


>gi|238785496|ref|ZP_04629479.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC
           43970]
 gi|238713598|gb|EEQ05627.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC
           43970]
          Length = 251

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQFA---SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q          N+ NA    +  + +     P +   +  R+        V  
Sbjct: 7   TAMGAARQSLDQQAVTANNLANASTPGFRAQLSAMRAVPIDGPSMATRTMVVASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ +           ++G    
Sbjct: 67  SQGTINFSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|254178067|ref|ZP_04884722.1| putative outer membrane protein [Burkholderia mallei ATCC 10399]
 gi|254199679|ref|ZP_04906045.1| haemagglutinin family protein [Burkholderia mallei FMH]
 gi|147749275|gb|EDK56349.1| haemagglutinin family protein [Burkholderia mallei FMH]
 gi|160699106|gb|EDP89076.1| putative outer membrane protein [Burkholderia mallei ATCC 10399]
          Length = 989

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/440 (5%), Positives = 75/440 (17%), Gaps = 3/440 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 275 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 331

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 332 SKSAITLGGAGVATPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 391

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 392 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 451

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 452 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 511

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S           +N  +                            +     + 
Sbjct: 512 STANGTNSTASGDSSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 571

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 572 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 631

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            ++          +G N+         +         + S   
Sbjct: 632 TASGSNSTANGANSTASGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATG 691

Query: 422 HMKSQVVFNHISESYSNTVG 441
              +       +   ++T  
Sbjct: 692 ENSTATGTASTASGSNSTAN 711


>gi|49077262|gb|AAT49657.1| PA1077 [synthetic construct]
          Length = 136

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         Q   +  +Q+   +  N+ NAD  NY  RD      
Sbjct: 1  MSISFDRALGIHQQALSFRAQRAEVLANNLANADTPNYKARDLDFAAV 48


>gi|53724850|ref|YP_102734.1| outer membrane protein [Burkholderia mallei ATCC 23344]
 gi|238562855|ref|ZP_04610258.1| hemagglutinin family protein [Burkholderia mallei GB8 horse 4]
 gi|254206000|ref|ZP_04912352.1| haemagglutinin family protein [Burkholderia mallei JHU]
 gi|52428273|gb|AAU48866.1| outer membrane protein, putative [Burkholderia mallei ATCC 23344]
 gi|147753443|gb|EDK60508.1| haemagglutinin family protein [Burkholderia mallei JHU]
 gi|238521815|gb|EEP85264.1| hemagglutinin family protein [Burkholderia mallei GB8 horse 4]
          Length = 1012

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/440 (5%), Positives = 75/440 (17%), Gaps = 3/440 (0%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           S       A +   + S        N+ +              ++    +V    S +  
Sbjct: 298 SASTGLATADSGIASLSTSLLGTADNVTSLST---SLSTVNANLAGLQTSVDNVVSYDDP 354

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               +    +       L           S D    +       +     +  +  +S  
Sbjct: 355 SKSAITLGGAGVATPVLLTNVAAGKIAATSTDAVNGSQLYTLQQEFSQQYDLLTSQVSSL 414

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
               + +  +        +                    +      S             
Sbjct: 415 STSVSGLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASA 474

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           + ++      D         +     +    N+       S           D      N
Sbjct: 475 SGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN 534

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           S    + S           +N  +                            +     + 
Sbjct: 535 STANGTNSTASGDSSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTAS 594

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
                  G +    G        +         +          +  +   +  +     
Sbjct: 595 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 654

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDL 421
             +  N            ++          +G N+         +         + S   
Sbjct: 655 TASGSNSTANGANSTASGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATG 714

Query: 422 HMKSQVVFNHISESYSNTVG 441
              +       +   ++T  
Sbjct: 715 ENSTATGTASTASGSNSTAN 734


>gi|308186391|ref|YP_003930522.1| Flagellar basal-body rod protein flgC [Pantoea vagans C9-1]
 gi|308056901|gb|ADO09073.1| Flagellar basal-body rod protein flgC [Pantoea vagans C9-1]
          Length = 134

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS---PENVT 51
          M+LL +F+ A +     SQ+      N+ NAD+        YV +  +            
Sbjct: 1  MALLNIFDIAGSAMTAQSQRLNVSASNLANADSVTGPDGKPYVAKQVVFQTDAAPGSATG 60

Query: 52 VVTQRSENKN 61
           V       +
Sbjct: 61 GVKVARVVDD 70


>gi|148546708|ref|YP_001266810.1| flagellar basal body rod protein FlgF [Pseudomonas putida F1]
 gi|148510766|gb|ABQ77626.1| flagellar basal-body rod protein FlgF [Pseudomonas putida F1]
          Length = 246

 Score = 38.1 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/237 (6%), Positives = 50/237 (21%), Gaps = 17/237 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMTERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +  +  +      +        F A++          +        L        +  
Sbjct: 63  GTDFSEGPMVETGRDLDVTVSGNGFIAVQ------APDGSEAYVRTGSLNIDALGVLRTG 116

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q     +     IR+   D  +  E+  ++    +   +    
Sbjct: 117 NGMPVLGNGGPIAIPPEQKVEVGSDGTISIRSMGEDPRVMAEVDRIKLVNPDTKGLTKGQ 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234
                +        D    ++    +   ++ +    + + +       +       
Sbjct: 177 DGLIHTSSGQPADADVNVRVVSGFLQGSNVNAVEEMTSVLALSRQFELHVKMMNAAK 233


>gi|312864097|ref|ZP_07724332.1| YhgE/Pip N-terminal domain protein [Streptococcus vestibularis
           F0396]
 gi|311100329|gb|EFQ58537.1| YhgE/Pip N-terminal domain protein [Streptococcus vestibularis
           F0396]
          Length = 789

 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 44/448 (9%), Positives = 113/448 (25%), Gaps = 9/448 (2%)

Query: 15  NNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
           +  S+   ++ +NI  +     V +                             + + + 
Sbjct: 144 SAMSKLKDTVSKNIT-STYVGAVFKSMSQLQGGMGTAANGASQLYAGAGALQSGSQTLSN 202

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL----SEDILGKTVIDN 130
           G   L  S + L   +       ++ T  +S L  +L   + N     S      +  + 
Sbjct: 203 GLGTLAGSTQTLATGVDTLSSGASAYTSGVSTLSGALSQLNANSEAVNSAAGQFVSGAEA 262

Query: 131 AEEVVQNFNTSAREVQKIRADAD----KEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
              +V   ++ +  + ++         ++ +L   +         + N  I     S   
Sbjct: 263 MNTLVTGADSLSTALSQMATATSLSEEQQAQLSTLSTNLTDLNTAIQNLNIAVSNTSLPS 322

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                      +      I  +             +D   +  T           +   +
Sbjct: 323 GTSTTSVDTSSIATYLSNISSAASSIATASATDKANDLAAVQGTAAYQSLTADQQAEITS 382

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           + SN         S+            + L    +      + L  +   + G  S  + 
Sbjct: 383 AISNAGSTASSYASTIASDVSSMSTALSSLTGTTTTSSGDSSSLASLQTSISGIASSANA 442

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           +   + +      A+        + Q     I V     +  S L  G S     L    
Sbjct: 443 LLPVASSTVSSMQANIANVNSVLVNQLSPGAIQVASGVSTAQSTLATGASALSTGLSTYT 502

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                        D+ + + +       +    L   A+          +    L     
Sbjct: 503 GAVSTIASGAQTLDANSSSLMTGFSTLQSGTSALNTGAQQLATGGNTLTNGLTSLSTNLS 562

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKV 454
            + N ++++      V++  + + ++  
Sbjct: 563 TLSNSLNKANQQLSLVSVNSDNAKMVSA 590


>gi|290474973|ref|YP_003467857.1| flagellar basal body rod cell-proximal protein [Xenorhabdus
          bovienii SS-2004]
 gi|289174290|emb|CBJ81080.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Xenorhabdus bovienii SS-2004]
          Length = 251

 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 10/39 (25%), Gaps = 3/39 (7%)

Query: 12 NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISP 47
               A Q     A    N+ NA    +  +       P
Sbjct: 7  TAMGAARQTLEHQAVTANNLANASTPGFKAQLAALRSVP 45


>gi|228964756|ref|ZP_04125863.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795006|gb|EEM42505.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 249

 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/56 (10%), Positives = 21/56 (37%)

Query: 418 SHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
           +             +         V++ +E++ L+  ++    S +++   DK+ +
Sbjct: 186 AEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 241



 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 51/222 (22%), Gaps = 18/222 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV----------------RRDTMTTISPENVTVVTQR 56
              N  Q+      N+ NA    +                 R D   T        V   
Sbjct: 2   GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           + + N+    +   +SA      L    A           + +          + + Y +
Sbjct: 62  ATHVNLVQGNIQMTNSATDF--FLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQ 119

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             S   +     +              +           I    +      +   +V   
Sbjct: 120 TSSGAFVMGENNERIRIPEGAKVAVQADGTLYDEVTQNNIARLQTKTVDAETNARLVQRE 179

Query: 177 IKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            K  T ++ +  +  +   ++   + E   +       + M 
Sbjct: 180 NKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMT 221


>gi|251797447|ref|YP_003012178.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. JDR-2]
 gi|247545073|gb|ACT02092.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. JDR-2]
          Length = 151

 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 17/72 (23%)

Query: 14 CNNASQQFASIVRNIENADNK--N--------YVRRDTMTTISPENVTVVTQRSENKNMF 63
                +   I  NI NA+             Y R+  +           TQ S   ++ 
Sbjct: 14 LTAQRLRMDVISSNIANAETTRAGYVNGQFVPYKRKMVVLEPM-------TQNSSFSDLL 66

Query: 64 DKVLHAHSSAIG 75
          +K L   S A G
Sbjct: 67 NKQLEGTSGAQG 78


>gi|87119678|ref|ZP_01075575.1| Flagellar basal-body rod protein FlgC [Marinomonas sp. MED121]
 gi|86165154|gb|EAQ66422.1| Flagellar basal-body rod protein FlgC [Marinomonas sp. MED121]
          Length = 149

 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          MSL  +F  + +  +  + +  ++  NI NAD+        Y  R  + +  
Sbjct: 1  MSLNNIFAISGSAMSAQTIRLNTVASNIANADSVASSEDQTYRARKPVFSTM 52


>gi|83717394|ref|YP_438390.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis
           E264]
 gi|167614838|ref|ZP_02383473.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis
           Bt4]
 gi|257141423|ref|ZP_05589685.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis
           E264]
 gi|83651219|gb|ABC35283.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis
           E264]
          Length = 241

 Score = 38.1 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/114 (7%), Positives = 21/114 (18%), Gaps = 1/114 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + A+     +  +      A    N+ NA    + R +     S              + 
Sbjct: 1   MDALIYTVMSGADRTLHGIAVHANNMANAQTDGF-RAELEMAESQAVRGYGYDSRHLLSP 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               L+  +  +                   D                 +    
Sbjct: 60  RANALNGEAGVVADTGRELDAAINGSGYFTVDTQGGEAYTRAGNFEIDADGALT 113


>gi|292489135|ref|YP_003532022.1| flagellar basal-body rod protein FlgC [Erwinia amylovora
          CFBP1430]
 gi|292900254|ref|YP_003539623.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291200102|emb|CBJ47228.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946]
 gi|291554569|emb|CBA22184.1| Flagellar basal-body rod protein flgC [Erwinia amylovora
          CFBP1430]
 gi|312173293|emb|CBX81548.1| Flagellar basal-body rod protein flgC [Erwinia amylovora ATCC
          BAA-2158]
          Length = 134

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL +VF+ + +     S++      N+ NAD
Sbjct: 1  MSLFSVFDISGSAMAAQSKRLNVSASNMANAD 32


>gi|196233721|ref|ZP_03132561.1| autotransporter-associated beta strand repeat protein
           [Chthoniobacter flavus Ellin428]
 gi|196222235|gb|EDY16765.1| autotransporter-associated beta strand repeat protein
           [Chthoniobacter flavus Ellin428]
          Length = 1925

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/440 (8%), Positives = 84/440 (19%), Gaps = 36/440 (8%)

Query: 3   LLAVFNKAQNICNNA-SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           + A  +   +  +         +  NI               +     V           
Sbjct: 206 ITAGLSIG-SGLSAYPGSTLQVVGNNI-----------VLNLSAPAPGVP---------- 243

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI--SKLRDSLESYSKNLS 119
                L   S++ G      +   +          +  P   I       +    S    
Sbjct: 244 ---SNLAVTSTSGGAALSWTAGANVGSYTVQRATTSGGPYTIITTGVKSTAYVDRSFTPG 300

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                  +  +        N  +     +               +     +     A   
Sbjct: 301 TTYYYVVLATSGTGTSAASNQVSAAPTVVNGTWTGGTGNYSDTTKWSGGAMASGAGATMT 360

Query: 180 KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
            +       D       +    +    +     +   +    + GT           ++ 
Sbjct: 361 ISTVGTITEDIPVSLGTINAAWNNSSSLILQGSSGAALNFTATSGTPALNMTTYFSRYDY 420

Query: 240 MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
           + + T+T      +  G      Q      G    L  +                 +   
Sbjct: 421 LTNLTITGAQGLSYSGGSNGLVLQSGLNWSGFSGGLNLVGPGNGDGGMIYAQSPNALPAT 480

Query: 300 SFSEKDPIAGNS--------ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + S       N          +     I      L       IS     +      PS  
Sbjct: 481 ALSMTPGTGTNGFRHAKLVLNSGANQTIGALNSTLVGTGTAYISSYSNASLLTGGAPSGT 540

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
              G  +     +  N A    +   Y +S N       +  +    +  +    +  ++
Sbjct: 541 NASGFATLTIGADNANGAFLGKIGTGYNNSSNAEDATANLLNLVKTGSGTQTFSGTNNYI 600

Query: 412 EKNRSDSHDLHMKSQVVFNH 431
                    L +        
Sbjct: 601 GSTTVSQGTLLIDGTYDQGT 620


>gi|331701165|ref|YP_004398124.1| MMPL domain-containing protein [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128508|gb|AEB73061.1| MMPL domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 983

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/268 (7%), Positives = 67/268 (25%), Gaps = 15/268 (5%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL    N+A        +   S    + N++                + ++         
Sbjct: 473 SLTNGLNQANQGIKKVQKGLKSANEKLANSNT---------------SESIAQVEKLADG 517

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                  A   + G          L           +S    + +L    +  +  +S+ 
Sbjct: 518 ASKLEAGAQQLSQGVTSYTAGVSNLASGSQQLSSGTSSLQSGVGRLSAGSQRLNTGISQV 577

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                 +      +    + +R++       + ++    + L +  S  + +N       
Sbjct: 578 RSQTAKLKALRARMAALQSGSRQLSSGLGRLNSQVAPFSNGLNQITSGASRLNSNSSSLV 637

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           +          Q +  +Q ++  +             + +++      +       + + 
Sbjct: 638 SGAQSVASGSSQVNSGVQTLNSKMKELQSQMQELQTGLTSANSGLDQVSSGTTTVNKYLK 697

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPK 269
               +   N  ++    + S   +    
Sbjct: 698 EMQKSYLGNTFYMPAASIKSASFTPSLD 725


>gi|162661125|gb|EDQ48677.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRRDTMT 43
                +Q+ A I  NI NAD   Y  +D   
Sbjct: 396 ALKIRTQRLAIIASNIANADTPGYQAKDLDF 426


>gi|149191151|ref|ZP_01869409.1| flagellar basal-body rod protein C [Vibrio shilonii AK1]
 gi|148834989|gb|EDL51968.1| flagellar basal-body rod protein C [Vibrio shilonii AK1]
          Length = 142

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MS L ++  A +  +  + +  +I  N+ NAD
Sbjct: 1  MSFLGIYETAGSAMSAQTVRLNTISSNLANAD 32


>gi|156934442|ref|YP_001438358.1| flagellar basal body rod protein FlgC [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532696|gb|ABU77522.1| hypothetical protein ESA_02273 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 134

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN-KN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NAD+        Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSAMTAQSKRMNVAASNLANADSATGPDGQPYRAKQVVFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVTDV 67


>gi|145298488|ref|YP_001141329.1| flagellar basal body protein FlgB [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851260|gb|ABO89581.1| flagellar basal body protein FlgB [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 132

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTISPENVT 51
          S++   +  NI NAD   +  RD   + +     
Sbjct: 20 SKRAEVLSSNIANADTPGFKARDINFSEALAQAQ 53


>gi|320166886|gb|EFW43785.1| thrombospondin [Capsaspora owczarzaki ATCC 30864]
          Length = 2254

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 40/416 (9%), Positives = 100/416 (24%), Gaps = 13/416 (3%)

Query: 31  ADNKNYVR-RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEM 89
           +    +      +   S   V   +  +        V    ++       ++S  ++   
Sbjct: 283 SSTPGFNATSTAVFNASSTAVK--STTAAFNASSTAVKSTTATFNASSTAVKSTSSVVNA 340

Query: 90  MSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149
            S      +S     +   D   S +   +           A     +    +       
Sbjct: 341 SSTPAFKASSTPAVNASSSDVDASSTAVDASSTPSFNATSTAVFNASSTAVKSTTAAFNA 400

Query: 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIST 209
           +    +      N      + T          A    +   ++     +   S  +  S+
Sbjct: 401 SSTAVKSTTAAFNASSTAVKSTSSVVNASSTPAFNASSTPAVNASSSDVDASSTAVDASS 460

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
               N       +  +T  ++     N       + T+  N         SS   ++   
Sbjct: 461 TPSFNATSTAVFNASSTAVKSTTAAFNASSTAVKSTTAAFNASSTAVKSTSSVVNASSTP 520

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
               +     ++           +      SF+       N+ +         +K     
Sbjct: 521 AFNASSTPAVNASSSDVDASSTAVDASSTPSFNATSTAVFNASSTA-------VKSTTAA 573

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +        + ++ + ++   SV         N +  P +     D    +   D
Sbjct: 574 FNASSTAVKSTTAAFNASSTAVKSTSSVVNASSTPAFNASSTPAVNASSSDVDASSTAVD 633

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNR---SDSHDLHMKSQVVFNHISESYSNTVGV 442
             +  + N T       S   ++      + S      +   FN  S +  +T  V
Sbjct: 634 ASSTPSFNATSTAVFNASSTAVKSTTAAFNASSTAVKSTTAAFNASSTAVKSTSSV 689


>gi|317121812|ref|YP_004101815.1| flagellar basal-body rod protein FlgB [Thermaerobacter
          marianensis DSM 12885]
 gi|315591792|gb|ADU51088.1| flagellar basal-body rod protein FlgB [Thermaerobacter
          marianensis DSM 12885]
          Length = 156

 Score = 38.1 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 25 VRNIENADNKNYVRRDTMTT 44
           +N+ NAD   Y R D    
Sbjct: 24 AQNVANADTPGYKRYDVDFA 43


>gi|332343650|gb|AEE56984.1| Flagellin protein FliC [Escherichia coli UMNK88]
          Length = 420

 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 115/391 (29%), Gaps = 7/391 (1%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILG 124
            ++  ++    Q  L  S E L   +  +   +++    I+    S        + +   
Sbjct: 11  SLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNAYD 70

Query: 125 KTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASK 184
              I  A+      +     +Q++R +   +     ++     S    +   ++      
Sbjct: 71  G--ISVAQTTEGALSEINNNLQRVR-ELTVQATTGTNSESDLSSIQDEIKSRLEEIDRVS 127

Query: 185 HDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYT 244
                          K++  +G +       D+    S    L      ++     +  T
Sbjct: 128 SQTQFNGVNVLAKDGKMNIQVGANDGQTITIDLKKIDSSTLNLSSFDATNLGTSVKDGAT 187

Query: 245 VTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEK 304
           +  +      D    +S     +   +      + D+    + +   + ++  I  F+  
Sbjct: 188 INKQVAVGAGDFKDKASGSLGTLKLVEKDGKYYVNDTTNSKYYDAEVDTSKGEIN-FNST 246

Query: 305 DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWN 364
           +           +        LD    +     +    +  ++   ++     + +  +N
Sbjct: 247 NESGTPPTAATEVTTVGRDVKLDASALKANQSLVVYKDKSGNDAYIIQTKDVTTNQSTFN 306

Query: 365 VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
             N++    L      +   N   DP+  ++  +  ++  R+S+G ++     +      
Sbjct: 307 AANISDAGVLSIGASTTAPSNLTADPLKALDDAIASVDKFRSSLGAVQNRLDSAIANLNN 366

Query: 425 SQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +    +       +    +   E+S + K +
Sbjct: 367 TTTNLSEAQSRIQDA---DYATEVSNMSKAQ 394


>gi|296282278|ref|ZP_06860276.1| flagellar basal-body rod protein FlgF [Citromicrobium bathyomarinum
           JL354]
          Length = 246

 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 26/123 (21%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +    +  +  +I  N+ N D   +                   RS     
Sbjct: 1   MDRLIYTALSGMQASMDRQRAIASNMANTDTLGFRAELIEQRAMTIEGHPNEARSMQVAR 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                      I   R L    A K +M+               L  S            
Sbjct: 61  VTGADMTGGEVIETGRDLDLAIATKSLMAVQADDGTEAYTRRGDLSISATGLLVTGDGHP 120

Query: 123 LGK 125
           +  
Sbjct: 121 VLG 123


>gi|293408365|ref|ZP_06652204.1| flagellar basal-body rod protein FlgC [Escherichia coli B354]
 gi|291471543|gb|EFF14026.1| flagellar basal-body rod protein FlgC [Escherichia coli B354]
          Length = 143

 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTISPENVTVVT 54
           MS   ++  + +     + +  ++  N+ NA+         Y  R  +      +  +  
Sbjct: 1   MSFTDIYQISGSAMTAQTLRLNTVASNLANAEAPAGSEAQAYKARSPVFAAVYHHSLLAG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
                 +     +       G  +  +    L +      + + +    ++ +  +   +
Sbjct: 61  THRHAMDGASVQVQDVLQTGGAVKRYEPHSPLADANGDVWYPDVNVVEQMADMMSASRDF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|256022419|ref|ZP_05436284.1| flagellin [Escherichia sp. 4_1_40B]
          Length = 497

 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 44/488 (9%), Positives = 135/488 (27%), Gaps = 23/488 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL +   +  +     S +  +  + I N             T + + +T  ++ + +  
Sbjct: 24  SLSSAIERLSSSLRINSAKDDAAGQAIAN-----------RFTANIKGLTQASRNANDGI 72

Query: 62  MFDKVLHAH-SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      +      + ++         +  D    S    I +    ++  S     
Sbjct: 73  SVAQTTEGALNEINNNLQRIRELSVQATNGTNSDSDLTSIQSEIQQRLSEIDRVSGQTQF 132

Query: 121 DILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           + +     D    +     +  T   ++Q+I +D        I +  +  +         
Sbjct: 133 NGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTKLKAATAETTYFG 192

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +  D      V           + +   N  + V  +      E    ++  
Sbjct: 193 STVKLADANTLDADITATVKGTTTPGKRDGNIMSDANGKLYVKVAGSDKSPENGYYEVTV 252

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E   +     +     + G    +     V   K K  + ++        +        L
Sbjct: 253 EDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTATASITGAKLFKL 312

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +  +         +    + A+  +       + +S T     ++ +    L      
Sbjct: 313 EDANGKDTGSFALIGDDGKQYAANVDQKTGAVSVKTMSYTDADGVKHDNVKVELGGSDGK 372

Query: 358 SKKFLWNVKNLAGYPDLI-----NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           ++             DL           + +     DP+A I+  ++ ++  R+++G ++
Sbjct: 373 TEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQVDSLRSNLGAIQ 432

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +      +    +       +    +   E+S + + +        ++   ++  
Sbjct: 433 NRFDSAITNLGNTVNNLSSARSRIEDA---DYATEVSNMSRAQILQQAGTSVLAQANQTT 489

Query: 473 QTLLEGVK 480
           Q +L  ++
Sbjct: 490 QNVLSLLR 497


>gi|238793999|ref|ZP_04637617.1| Flagellar basal-body rod protein flgF [Yersinia intermedia ATCC
           29909]
 gi|238726631|gb|EEQ18167.1| Flagellar basal-body rod protein flgF [Yersinia intermedia ATCC
           29909]
          Length = 251

 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 35/155 (22%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  + +     P +   +  R+        V  
Sbjct: 7   TAMGAARQSLEQQAVTANNLANASTPGFRAQLSAMRAVPIDGPSMATRTMVTASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ +           ++G    
Sbjct: 67  SQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|188534172|ref|YP_001907969.1| flagellar basal body rod protein FlgC [Erwinia tasmaniensis
          Et1/99]
 gi|188029214|emb|CAO97086.1| Cell-proximal portion of basal-body rod [Erwinia tasmaniensis
          Et1/99]
          Length = 134

 Score = 38.1 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          M+LL +F+ A +     SQ+      N+ NAD+        YV +  +   +    +   
Sbjct: 1  MALLNIFDIAGSAMAAQSQRLNVSASNLANADSVTGPDGQPYVAKQVVFQTNAAPGSAAG 60


>gi|319944137|ref|ZP_08018415.1| flagellar basal-body rod protein FlgC [Lautropia mirabilis ATCC
          51599]
 gi|319742631|gb|EFV95040.1| flagellar basal-body rod protein FlgC [Lautropia mirabilis ATCC
          51599]
          Length = 149

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 9/50 (18%)

Query: 3  LLAVFNK---AQNICNNASQQFASIVRNIENADNKN------YVRRDTMT 43
          + ++ N    A +  +  SQ+  ++  N+ NAD         Y  R  + 
Sbjct: 1  MSSLMNILPLAGSALSAQSQRLNTVASNLANADTVAGPDGSVYKARQVVF 50



 Score = 37.3 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 17/32 (53%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             VN+ EE+  +I   +SY  + +++    ++
Sbjct: 109 SNVNVIEEMVNMISASRSYQNNVEMMNTAQQL 140


>gi|317403687|gb|EFV84175.1| flagellin domain-containing protein [Achromobacter xylosoxidans
           C54]
          Length = 564

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 47/444 (10%), Positives = 109/444 (24%), Gaps = 13/444 (2%)

Query: 50  VTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
             +     +      KVL A++  +  Q      E +   +S           +      
Sbjct: 121 ADIDRISQQTDFNGVKVLSANAQPLTLQVGANDGETITLNLSEISAKTLGLDGFNVNGSG 180

Query: 110 SLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRR-FLS 168
             E+ S  +S+      V   A E       +A    ++    +   ++ +       + 
Sbjct: 181 VTENRSATVSDLQAAGGVTVAANEWQVTTTHAAATADQVFGKLENGNKVTVGTAATGTIY 240

Query: 169 ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
                N    F   S  +A         L        G+ T     +           + 
Sbjct: 241 TYDAANKNFTFSDKSASNAATVTTLATSLRPATGTTTGVYTHSNGTSSTSFEVDATGAVK 300

Query: 229 ETVPRDINFEKMNSYTVTSESNPIFIDGV---VVSSNQGSAVPKGKIKALLQIRDSVVPI 285
                       N  T ++      +DGV      +   +      I        +   +
Sbjct: 301 INGTAAFLDAAGNLTTNSAGGTAATLDGVLQAAGGNTAAAGSSSVAINGKTYSNVAGTGV 360

Query: 286 FQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYR 345
                + +A   + +  +    A +     G  I     +                    
Sbjct: 361 ALQFTNTIASDALLANVKAHATANDVTVTLGSGITSATVNFTAGTSTNTFVDDKSAFTTL 420

Query: 346 SNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL---- 401
           +N +        + K        +G            +        A    ++T      
Sbjct: 421 ANYTTNYAVDPNNGKVTVKSGTGSGDYAPKIGEEAKVSSGGKLTTDATSKGSLTEDPLKT 480

Query: 402 -----EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456
                       G L   ++           V N++S + S     +   E+S + + + 
Sbjct: 481 LDAAFTVLNKLTGELGAVQNRLESTIANLDNVVNNLSSARSRIQDADYATEVSNMSRAQI 540

Query: 457 SYNISNKLIMFTDKMLQTLLEGVK 480
                  ++   +++ QT+L  ++
Sbjct: 541 LQQAGTSVLAQANQVPQTVLSLLR 564


>gi|325109010|ref|YP_004270078.1| flagellar basal-body rod protein FlgC [Planctomyces brasiliensis
          DSM 5305]
 gi|324969278|gb|ADY60056.1| flagellar basal-body rod protein FlgC [Planctomyces brasiliensis
          DSM 5305]
          Length = 133

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/61 (9%), Positives = 16/61 (26%), Gaps = 8/61 (13%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADN----KN----YVRRDTMTTISPENVTVVT 54
          +    +   +      Q+  +I  N+ N       +     + RR        ++     
Sbjct: 1  MFRTIDIITSGLVAQRQRLNTIAENVANQQTTRDAEGNVSPFQRRFVTFAADSDSTEAAG 60

Query: 55 Q 55
           
Sbjct: 61 V 61


>gi|293415234|ref|ZP_06657877.1| flagellin [Escherichia coli B185]
 gi|291432882|gb|EFF05861.1| flagellin [Escherichia coli B185]
          Length = 420

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/404 (8%), Positives = 119/404 (29%), Gaps = 11/404 (2%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                + + ++  +     + +     + +    L+   + DD    +  +  +     L
Sbjct: 2   AQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              ++N ++       I  A+      +     +Q++R +   +     ++     S   
Sbjct: 62  TQAARNAND------GISVAQTTEGALSEINNNLQRVR-ELTVQATTGTNSESDLSSIQD 114

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   ++                     K++  +G +       D+    S    L    
Sbjct: 115 EIKSRLEEIDRVSSQTQFNGVNVLAKDGKMNIQVGANDGQTITIDLKKIDSSTLNLSSFD 174

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++     +  T+  +      D    +S     +   +      + D+    + +   
Sbjct: 175 ATNLGTSVKDGATINKQVAVGAGDFKDKASGSLGTLKLVEKDGKYYVNDTTNSKYYDAEV 234

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + ++  I  F+  +           +        LD    +     +    +  ++   +
Sbjct: 235 DTSKGEIN-FNSTNESGTTPTAATEVTTVGRDVKLDASALKANQSLVVYKDKSGNDAYII 293

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +     + +  +N  N++    L      +   N   DP+  ++  +  ++  R+S+G +
Sbjct: 294 QTKDVTTNQSTFNAANISDAGVLSIGASTTAPSNLTADPLKALDDAIASVDKFRSSLGAV 353

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +     +      +    +       +    +   E+S + K +
Sbjct: 354 QNRLDSAIANLNNTTTNLSEAQSRIQDA---DYATEVSNMSKAQ 394


>gi|261341496|ref|ZP_05969354.1| flagellar basal-body rod protein FlgC [Enterobacter cancerogenus
          ATCC 35316]
 gi|288316292|gb|EFC55230.1| flagellar basal-body rod protein FlgC [Enterobacter cancerogenus
          ATCC 35316]
          Length = 141

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPE 48
          M+   ++  + +     + +  +I  N+ NA+         Y  R  +     +
Sbjct: 1  MAFSDIYRVSGSAMTAQTVRLNTIASNLANAETPAVDEGNVYKARRPVFAAVYQ 54


>gi|74716283|sp|Q8WXI7|MUC16_HUMAN RecName: Full=Mucin-16; Short=MUC-16; AltName: Full=Ovarian
            cancer-related tumor marker CA125; Short=CA-125; AltName:
            Full=Ovarian carcinoma antigen CA125
 gi|24419041|gb|AAL65133.2| ovarian cancer related tumor marker CA125 [Homo sapiens]
          Length = 22152

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 43/416 (10%), Positives = 100/416 (24%), Gaps = 13/416 (3%)

Query: 38   RRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL-LQSFEALKEMMSADDHY 96
            RR +  T+S      +   S       + L   SS + +      +  +       +   
Sbjct: 1668 RRSSTATVSMAGTMGLLVTSAPGRSISQSLGRVSSVLSESTTEGVTDSSKGSSPRLNTQG 1727

Query: 97   NNSPTHYISKLRDSLESYSKN-LSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKE 155
            N + +  +          S +           ++               +    + +   
Sbjct: 1728 NTALSSSLEPSYAEGSQMSTSIPLTSSPTTPDVEFIGGSTFWTKEVTTVMTSDISKSSAR 1787

Query: 156  IELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN 215
             E   + L       T      K +TAS                 ++     +T    + 
Sbjct: 1788 TESSSATLMSTALGSTENTGKEKLRTASMDLPSPTPSMEVTPWISLTLSNAPNTTDSLDL 1847

Query: 216  DMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFID-GVVVSSNQGSAVPKGKIKA 274
               V+TS   TL      +    + +     S+++   +  G    ++           +
Sbjct: 1848 SHGVHTSSAGTLATDRSLNTGVTRASRLENGSDTSSKSLSMGNSTHTSMTDTEKSEVSSS 1907

Query: 275  LLQIRDSVVPIFQNQLDEMARVLIGSFS---------EKDPIAGNSENVPGLFIADGIKD 325
            +    ++  P  +  L         S +         E       S              
Sbjct: 1908 IHPRPETSAPGAETTLTSTPGNRAISLTLPFSSIPVEEVISTGITSGPDINSAPMTHSPI 1967

Query: 326  LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
                +    + TI  + Q     S  +           N   ++  P   N      + +
Sbjct: 1968 TPPTIVWTSTGTIEQSTQPLHAVSSEKVSVQTQSTPYVNSVAVSASPTHENSVSSGSSTS 2027

Query: 386  FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
              +   +  + + T+         WL    +        S  +   +S  +S    
Sbjct: 2028 SPYSSASLESLDSTISRR-NAITSWLWDLTTSLPTTTWPSTSLSEALSSGHSGVSN 2082


>gi|82702451|ref|YP_412017.1| flagellar basal-body rod protein FlgC [Nitrosospira multiformis
          ATCC 25196]
 gi|82410516|gb|ABB74625.1| flagellar basal-body rod protein FlgC [Nitrosospira multiformis
          ATCC 25196]
          Length = 139

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          MSL  +F  A +     +Q+   +  N+ NAD+        Y  +  +   +
Sbjct: 1  MSLFNIFTVAGSAMTAQNQRLNVVASNLANADSAASSNGQPYKAKQVVFMST 52


>gi|187932642|ref|YP_001885066.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720795|gb|ACD22016.1| flagellar hook-basal body complex protein [Clostridium botulinum B
           str. Eklund 17B]
          Length = 257

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477
           ++ +    T  VN  EEL  L+++++ +  + K +   D+ +Q    
Sbjct: 205 NVRQGVLETSNVNPTEELVKLMEIKRQFETNQKFVSMQDETVQKAAN 251


>gi|15615024|ref|NP_243327.1| flagellar basal body rod protein FlgB [Bacillus halodurans C-125]
 gi|10175081|dbj|BAB06180.1| flagellar basal-body rod protein [Bacillus halodurans C-125]
          Length = 132

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 3/43 (6%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          S L+   K     +   +    I +NI N D  NY  +     
Sbjct: 7  STLSALEKGLYGASLQQRA---ISQNIANVDTPNYKAKKVNFQ 46


>gi|224373051|ref|YP_002607423.1| flagellar hook FlgE [Nautilia profundicola AmH]
 gi|223588691|gb|ACM92427.1| flagellar hook FlgE [Nautilia profundicola AmH]
          Length = 91

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
            +  +  G NL +EL+  I +E+ +      I   D+M +TLL+  
Sbjct: 45  SANISDAGTNLTKELTDQIVIEKGFKAQVPAIKTQDEMTKTLLDIK 90


>gi|70729005|ref|YP_258739.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens
           Pf-5]
 gi|68343304|gb|AAY90910.1| flagellar basal-body rod protein FlgF [Pseudomonas fluorescens
           Pf-5]
          Length = 246

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 48/223 (21%), Gaps = 17/223 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARAMPVFGDSFPARAFAMSERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +     +      +        + A++          +        L        +  
Sbjct: 63  ATDFSAGSMVETGRDLDVAVSGNGWIAVQ------SPDGSESYVRTGSLNVDALGVLRAG 116

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q           IRA      +  E+  ++    ++  +   +
Sbjct: 117 NGMPVMGNGGPIAVPPEQKIEVGQDGTISIRAMGEGPRVMAEVDRIKLVNPDIKNLTKGL 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                +K       D    L+    E   ++ +      + + 
Sbjct: 177 DGSIKTKDGQPAPADANVQLVSGFLESSNVNAVEEMTAVLALS 219


>gi|120598229|ref|YP_962803.1| flagellar basal body rod protein FlgB [Shewanella sp. W3-18-1]
 gi|120558322|gb|ABM24249.1| flagellar basal-body rod protein FlgB [Shewanella sp. W3-18-1]
          Length = 134

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
                     I  NI NAD  +Y  RD   +
Sbjct: 17 GIRAERA--EVISSNIANADTPHYKARDVDFS 46


>gi|90422600|ref|YP_530970.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris
           BisB18]
 gi|90104614|gb|ABD86651.1| flagellar basal body rod protein [Rhodopseudomonas palustris
           BisB18]
          Length = 243

 Score = 38.1 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/206 (5%), Positives = 47/206 (22%), Gaps = 2/206 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    + +   +  ++  +I  N+ N     +         +       +Q       
Sbjct: 1   MQSALYVSLSAQVSLEKRLETIANNMANMKTTAFRADAVKFETALS--RAASQPVAFATP 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +   + ++ Q         +          +        +++ S     + ++   
Sbjct: 59  GDNFISRAAGSVTQTGNNLDVAVVGNSWMGFTGPSGPVYTRDGRMQISSTGELQTITGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                 +      I    ++   L +  +          N  +     
Sbjct: 119 VLDAGGTPIIVDPDAGPLTISRNGTISQGTNEVGMLGLFEIAADAKLARFANSGVVPDRG 178

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGIS 208
           +                + S +  +S
Sbjct: 179 ATAVVDFINTGFQQGYVEGSNVDPLS 204


>gi|295688393|ref|YP_003592086.1| hypothetical protein Cseg_0963 [Caulobacter segnis ATCC 21756]
 gi|295430296|gb|ADG09468.1| protein of unknown function DUF1078 domain protein [Caulobacter
           segnis ATCC 21756]
          Length = 79

 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479
           V+  +E    I  +  +  + K++   D+M   LL   
Sbjct: 41  VDYGKERVEQISAQYDFRANAKVVQTADQMTGALLNIK 78


>gi|261344141|ref|ZP_05971785.1| flagellar basal-body rod protein FlgF [Providencia rustigianii DSM
           4541]
 gi|282567733|gb|EFB73268.1| flagellar basal-body rod protein FlgF [Providencia rustigianii DSM
           4541]
          Length = 251

 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 59/237 (24%)

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            + +  M       E+  I  + +   S  G       ++A+    DS            
Sbjct: 3   HVIYTAMGGARHALENQGIVSNNIANVSTAGFKAQLSAMRAVPIHGDSEQTRTMVVASTP 62

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
              +          A +       F+A  + D      +  +  +  + +     + L+ 
Sbjct: 63  GADMSQGPLNYTGKATDVALNDKHFLAVALADGSEAYTRNGNIQVSPDGELMIGGNLLQG 122

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
            G            +     +                   +               +   
Sbjct: 123 DGGPIDVPPNADLTIGADGTITALLATDPPTMLGQIGRLKVVEAQPNELIRGEDGLFHLS 182

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
            ++ + + +   Q     ++        VN  E +  +I   + + +  K+I   D+
Sbjct: 183 AQAQAANGNGLQQSGRAIVTSGVIEGSNVNAAEAMVSMIANARHFEMQMKVIHSADE 239


>gi|218133657|ref|ZP_03462461.1| hypothetical protein BACPEC_01526 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991032|gb|EEC57038.1| hypothetical protein BACPEC_01526 [Bacteroides pectinophilus ATCC
          43243]
          Length = 131

 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 22 ASIVRNIENADNKNYVRRDTMTT 44
            +  NI N D   Y R+D    
Sbjct: 25 EVLTNNIANVDTPGYKRKDVSFE 47


>gi|150019083|ref|YP_001311337.1| flagellar basal body rod protein FlgB [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905548|gb|ABR36381.1| flagellar basal-body rod protein FlgB [Clostridium beijerinckii
          NCIMB 8052]
          Length = 134

 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +     ++ +  +I  N+ N + K+Y R + +   +
Sbjct: 16 KQGIKASNVRAKTIANNMANVNTKDYKRFNVVFEEN 51


>gi|295706288|ref|YP_003599363.1| flagellar basal-body rod protein FlgB [Bacillus megaterium DSM
          319]
 gi|294803947|gb|ADF41013.1| flagellar basal-body rod protein FlgB [Bacillus megaterium DSM
          319]
          Length = 129

 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 1  MSLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          MSL +  F   +N  + ASQ+  +I +NI N D  NY  +    T 
Sbjct: 1  MSLFSTTFQTIENGISYASQKQQTIAQNIANVDTPNYKSKTVTRTS 46


>gi|54297179|ref|YP_123548.1| flagellar basal body rod protein FlgB [Legionella pneumophila
          str. Paris]
 gi|148358803|ref|YP_001250010.1| flagellar basal body rod protein FlgB [Legionella pneumophila
          str. Corby]
 gi|296106848|ref|YP_003618548.1| flagellar basal-body rod protein FlgB [Legionella pneumophila
          2300/99 Alcoy]
 gi|53750964|emb|CAH12375.1| Flagellar basal-body rod protein FlgB [Legionella pneumophila
          str. Paris]
 gi|148280576|gb|ABQ54664.1| flagellar basal body rod protein FlgB [Legionella pneumophila
          str. Corby]
 gi|295648749|gb|ADG24596.1| flagellar basal-body rod protein FlgB [Legionella pneumophila
          2300/99 Alcoy]
          Length = 130

 Score = 38.1 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 16/57 (28%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          L + F           Q+ + +  NI N +  N+  RD               +   
Sbjct: 5  LDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMAGNSQQLR 61


>gi|311105932|ref|YP_003978785.1| flagellar basal-body rod protein FlgB [Achromobacter xylosoxidans
          A8]
 gi|310760621|gb|ADP16070.1| flagellar basal-body rod protein FlgB [Achromobacter xylosoxidans
          A8]
          Length = 135

 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                Q    +  NI NAD  NY  RD     +  N    T+R  + ++      
Sbjct: 17 GLRAQRQ--EVLSSNIANADTPNYKARDFDFKTAMANAMEGTKRLPDTSLTLTSAR 70


>gi|114570487|ref|YP_757167.1| flagellar basal body rod protein FlgC [Maricaulis maris MCS10]
 gi|114340949|gb|ABI66229.1| flagellar basal-body rod protein FlgC [Maricaulis maris MCS10]
          Length = 137

 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISPENVTVVTQR 56
                +       + +   I  NI NAD+         Y R+  +     +  T +   
Sbjct: 5  SDTMQISAFGMRAQAARMRIISENIANADSTAREAGGDPYRRQVPVFEAELDRATGLNAV 64

Query: 57 SENKNMFDKV 66
                 D+ 
Sbjct: 65 RMTDVAHDQS 74


>gi|193806311|sp|Q7Z5P9|MUC19_HUMAN RecName: Full=Mucin-19; Short=MUC-19; Flags: Precursor
          Length = 6254

 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/439 (7%), Positives = 72/439 (16%), Gaps = 17/439 (3%)

Query: 9    KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                  +                         T T      VT     S           
Sbjct: 5203 TGTTGLSA-----GVTG-------TTGLSAGVTETIGLSAGVTGTIGSSAGVKGTTGQSA 5250

Query: 69   AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
              + A GQ   +         ++     +            +  S            +V 
Sbjct: 5251 EVTGATGQSVGVTGTTRSSGGVTGITGLSAGLRGTTVSSAKAGTSIPLTGKTGTTRTSVE 5310

Query: 129  DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
            ++         T    +       ++        +            +++    +   A 
Sbjct: 5311 ESTTTGPSAGITGTNGLSAEMTGTNELSAGVTGTIGSSAGVTGTTGLSVEATVTTGLSAG 5370

Query: 189  DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                   +     +                V    G +   T    ++     +   ++E
Sbjct: 5371 VTGTTVPLAGVTWTPGPSAGVTGIAALSAGVTGKSGLSAGVTGKTGLSAGVTGTTGPSAE 5430

Query: 249  SNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
            +         V+   G          L                        +   +    
Sbjct: 5431 ATGKTGLSAGVTGITGPFAEVTGTTGLSAGVIGTTGSSAEVTGITGLSAGVTGKTRSSAG 5490

Query: 309  GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL-----RDGGSVSKKFLW 363
                          I           S       +  +  +       R  G+       
Sbjct: 5491 VTGTTGLSAKSGTSIPSAGKTGTTKTSVEESRTTRPSAGITGTNGLPARVTGTXXXXXXX 5550

Query: 364  NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
                 +G          SF+      P A   T           +G      ++      
Sbjct: 5551 XXXGTSGVAPGTTVAPGSFSTAATTSPGASGVTGTGPTAETTTFLGGSSTTGAEIKSGAT 5610

Query: 424  KSQVVFNHISESYSNTVGV 442
                     +    +   V
Sbjct: 5611 TGAPGSKTGTAKVLSGTTV 5629


>gi|103488385|ref|YP_617946.1| flagellar basal-body rod protein FlgC [Sphingopyxis alaskensis
           RB2256]
 gi|98978462|gb|ABF54613.1| flagellar basal-body rod protein FlgC [Sphingopyxis alaskensis
           RB2256]
          Length = 267

 Score = 38.1 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNK 34
            +VF+ +    +    +  +   N+ NA   
Sbjct: 138 FSVFDISGRAMSAQLVRLNTTASNLANAGTV 168



 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 33/137 (24%), Gaps = 11/137 (8%)

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN-VTLLEYARNSIGW 410
           R         ++++   A    L+     + N                +L    R  +  
Sbjct: 130 RRITMNGSFSVFDISGRAMSAQLVRLNTTASNLANAGTVAGSEAGAFRSLKPVFRTVMDD 189

Query: 411 LEKNRSDSHDLHMKS---------QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
             +       +                      +      V+   EL  +++  + Y  +
Sbjct: 190 HGRATVQIDQITTSKMAPSKRHDPSNPLADADGNVWEAA-VDSAAELVEMVETARQYQNN 248

Query: 462 NKLIMFTDKMLQTLLEG 478
            +++     ++   L  
Sbjct: 249 VQVLETAKGLINETLRM 265


>gi|284007175|emb|CBA72461.1| flagellar basal body rod protein FlgC [Arsenophonus nasoniae]
          Length = 135

 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476
            V++  E+   I   +SY  + +++  T  ++Q  L
Sbjct: 96  NVDVTAEMINPISASRSYQANIEVMNTTKSLMQKTL 131


>gi|224825778|ref|ZP_03698882.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002]
 gi|224602002|gb|EEG08181.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002]
          Length = 241

 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 25/150 (16%), Gaps = 9/150 (6%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58
           + A+     +                  N+ NA    + R D     S            
Sbjct: 1   MDALIYTIMSGADRTLKAQQ----VHANNLANAQTNGF-RADIEVASSQAVRGYGYDARH 55

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                   +   +  + +           +   A    +                     
Sbjct: 56  MTRAEPNAVDHRAGTVVETGRDLDVALQGDGFLAVAVGSGEAYTRAGNFSVDANGALTVN 115

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
              +LG          V+        +   
Sbjct: 116 GRPVLGDGGPIVLPPYVRVAVAGDGTISIQ 145


>gi|262173355|ref|ZP_06041032.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451]
 gi|261890713|gb|EEY36700.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451]
          Length = 243

 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 38/168 (22%), Gaps = 20/168 (11%)

Query: 3   LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYVR--RDTM----TTISPENVTV 52
           +  +   A +                  N+ NAD   +                 +  T+
Sbjct: 1   MDNLLFTATSGASRVLKAQ----HVRSNNLSNADTAGFRADMERAESFQLYGSGFDGRTM 56

Query: 53  VTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLE 112
           V   S         +      +    + + +  ++                   ++    
Sbjct: 57  VVTNSATTRFDSGDVIKTGRPLDVAIIGEGYLTVE------APQGGEAYTRAGNIKVDAF 110

Query: 113 SYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                    +LG++      E  +       +V  I      +IE+  
Sbjct: 111 GAMTINGFPVLGESGSMVLPEYQKIEIGERGQVSVIPPGGGAKIEVGT 158


>gi|260597443|ref|YP_003210014.1| flagellar basal body rod protein FlgC [Cronobacter turicensis
          z3032]
 gi|260216620|emb|CBA29913.1| Flagellar basal-body rod protein flgC [Cronobacter turicensis
          z3032]
          Length = 134

 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN-KN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     S++      N+ NAD+        Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSAMTAQSKRMNVAASNLANADSATGPDGQPYRAKQVIFQVDAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVTDV 67


>gi|149375037|ref|ZP_01892810.1| Flagellar basal body protein [Marinobacter algicola DG893]
 gi|149360926|gb|EDM49377.1| Flagellar basal body protein [Marinobacter algicola DG893]
          Length = 132

 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 19 QQFASIVRNIENADNKNYVRRDTMTTIS 46
          ++   +  N+ NAD   Y  RD      
Sbjct: 21 KRAEVLANNLANADTPGYKARDVDFQAM 48


>gi|23477612|gb|AAN34779.1| flagellin [Escherichia coli]
          Length = 498

 Score = 37.7 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 45/488 (9%), Positives = 137/488 (28%), Gaps = 23/488 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL +   +  +     S +  +  + I N             T + + +T  ++ + +  
Sbjct: 24  SLNSAIERLSSGLRINSAKDDAAGQAIAN-----------RFTANIKGLTQASRNANDGI 72

Query: 62  MFDKVLHAH-SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      +      + ++   A     +  D    S    I +    ++  S     
Sbjct: 73  SVAQTTEGALNEINNNLQRIRELSAQATNGTNSDSDLTSIQSEIQQRLSEIDRVSGQTQF 132

Query: 121 DILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           + +     D    +     +  T   ++Q+I +D        I +  +  +         
Sbjct: 133 NGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTKLKAATAETTYFG 192

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +  D      V           + +   N  + V  +      E    ++  
Sbjct: 193 STVKLADANTLDADITATVKGTTTPGQRDGNIMSDANGKLYVKVAGSDKPAENGYYEVTV 252

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E   +     +     + G    +     V   K K  + ++        +        L
Sbjct: 253 EDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTATASITGAKLFKL 312

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
           + +  +         +    + A+  +       + +S T     ++ +    L      
Sbjct: 313 VDANGKDTGSFALIGDDGKQYAANVDQKTGAVSAKTMSYTDADGVKHDNVKVELGGSDGK 372

Query: 358 SKKFLWNVKNLAGYPDLI-----NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           ++             DL           + +     DP+A I+  ++ ++  R+++G ++
Sbjct: 373 TEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQVDSLRSNLGAIQ 432

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
                +      +    +       +    +   E+S + + +        ++   ++  
Sbjct: 433 NRFDSAITNLGNTVNNLSSARSRIEDA---DYATEVSNMSRAQILQQAGTSVLAQANQTT 489

Query: 473 QTLLEGVK 480
           Q +L  ++
Sbjct: 490 QNVLSLLQ 497


>gi|330818584|ref|YP_004362289.1| flagellar basal body rod protein FlgF [Burkholderia gladioli BSR3]
 gi|327370977|gb|AEA62333.1| flagellar basal body rod protein FlgF [Burkholderia gladioli BSR3]
          Length = 250

 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 4/133 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPEN-VTVVTQRSENKN 61
           +  +   A      A +Q + I  N+ NA    +  +       P N        +    
Sbjct: 1   MDRLIYTAMTGAGQALEQQSVIANNLANASTTGFRAQLATYRAVPMNFGEASNPTTTRTF 60

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNL 118
           + D    A  +     R     +   +    +S      +        L         N 
Sbjct: 61  VLDSTPGADYTPGPITRTGNPLDVAVQGPGWLSVLAPDGSEAYTRAGNLHVDENGQLVNA 120

Query: 119 SEDILGKTVIDNA 131
           S   +       A
Sbjct: 121 SNLPVVGGGGPIA 133


>gi|327398889|ref|YP_004339758.1| flagellar hook-basal body protein [Hippea maritima DSM 10411]
 gi|327181518|gb|AEA33699.1| flagellar hook-basal body protein [Hippea maritima DSM 10411]
          Length = 264

 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRR 39
          + +    A        Q+  +I  NI N +   + + 
Sbjct: 1  MFSGVYDAAGGMVIEMQRVNNITNNIANLNTPGFKKE 37


>gi|239815253|ref|YP_002944163.1| flagellar basal body protein [Variovorax paradoxus S110]
 gi|239801830|gb|ACS18897.1| flagellar basal body protein [Variovorax paradoxus S110]
          Length = 127

 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN-KNMFDKVLH 68
            + AS +  +I  NI NA+   YV +         +      +S          + 
Sbjct: 16 ALDAASLRQQAIATNIANANAVGYVPQRVSFEDQLADARSTLAQSGRLDAFALSQVR 72


>gi|52841448|ref|YP_095247.1| flagellar basal body rod protein FlgB [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|54294160|ref|YP_126575.1| flagellar basal body rod protein FlgB [Legionella pneumophila
          str. Lens]
 gi|52628559|gb|AAU27300.1| flagellar basal body rod protein FlgB [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|53753992|emb|CAH15463.1| Flagellar basal-body rod protein FlgB [Legionella pneumophila
          str. Lens]
 gi|307609974|emb|CBW99503.1| flagellar basal-body rod protein FlgB [Legionella pneumophila
          130b]
          Length = 130

 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 16/57 (28%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          L + F           Q+ + +  NI N +  N+  RD               +   
Sbjct: 5  LDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMAGNSQQLR 61


>gi|109947349|ref|YP_664577.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis
           str. Sheeba]
 gi|109714570|emb|CAJ99578.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis
           str. Sheeba]
          Length = 269

 Score = 37.7 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 43/178 (24%), Gaps = 15/178 (8%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQR 78
            +   +  N+ N +   + R DT+T+               +    + L          +
Sbjct: 17  NRLDLVSNNLANLNTNGFKRDDTITSDFL---------RLYQQY-QEQLPLKDQTKASAK 66

Query: 79  LLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138
            L        ++S      +     +    ++       L+   L   +  N        
Sbjct: 67  YLNRNLNRVPILSEIYTDKS-----LGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTRD 121

Query: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
              + +        +    L  S L      + + N  I+          D   Q   
Sbjct: 122 GHFSIDKDGFLVTLNGFKVLSRSGLNEQGGIMLMPNTEIEVDQNGGITFSDNEAQIQA 179


>gi|170737039|ref|YP_001778299.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia
           MC0-3]
 gi|169819227|gb|ACA93809.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia
           MC0-3]
          Length = 241

 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/190 (8%), Positives = 37/190 (19%), Gaps = 7/190 (3%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYV---RRDTMTTISPENVTVVTQRSEN 59
           +      A     ++ +       N+ NA    +       T                 +
Sbjct: 1   MDNFLYTAMTGAEHSLRALNVRANNLSNAQTSGFRADLASVTSQAARGYGYD----SRYH 56

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
             +    ++     I +               A +            L    +       
Sbjct: 57  ATLTSTHVNPEPGKISETGRTLDVAIDGGGYLAVETAQGVAYTRAGALTLDGDGALTLNG 116

Query: 120 EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
             +LG+       E       +   +  + A      +     L        V N     
Sbjct: 117 NAVLGEGGPIVLPEHDALTIGADGTISVVTAGEKDIQDAGRLLLVNPDPADLVKNAQGLI 176

Query: 180 KTASKHDAHD 189
            + +  D   
Sbjct: 177 VSRTGTDYAA 186


>gi|238799108|ref|ZP_04642564.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC
           43969]
 gi|238717055|gb|EEQ08915.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC
           43969]
          Length = 251

 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQFA---SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q          N+ NA    +  + +     P +   +  R+        V  
Sbjct: 7   TAMGAARQSLDQQAVTANNLANASTPGFRAQLSAMRAVPIDGPSMATRTMVVASTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ +           ++G    
Sbjct: 67  SQGTINFSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|118588710|ref|ZP_01546118.1| Flagellar basal body rod protein [Stappia aggregata IAM 12614]
 gi|118438696|gb|EAV45329.1| Flagellar basal body rod protein [Stappia aggregata IAM 12614]
          Length = 226

 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/127 (7%), Positives = 23/127 (18%), Gaps = 7/127 (5%)

Query: 24  IVRNIENADNKNYVRRDTMTTISPENVTVVT------QRSENKNMFDKVLHAHSSAIGQQ 77
           I  N+ N +   +  ++         V   +      +     +MF          I   
Sbjct: 2   IANNMANINTSGFKSQNLHFAEYVMPVADGSAFEPQDRAISYVDMFTTRTDFTHGPIKMT 61

Query: 78  RLLQSFEALKEMMSADD-HYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                     +   A                R        +     +       +     
Sbjct: 62  GNEFDLSLNSDGFFAVQMPDGTEAYTRSGAFRLDSTGQLISADGSPVMTDQGPISFNAED 121

Query: 137 NFNTSAR 143
                A+
Sbjct: 122 GRVEIAQ 128


>gi|157371206|ref|YP_001479195.1| flagellar basal body rod protein FlgF [Serratia proteamaculans 568]
 gi|157322970|gb|ABV42067.1| flagellar basal-body rod protein FlgF [Serratia proteamaculans 568]
          Length = 251

 Score = 37.7 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 37/161 (22%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A        +Q +    N+ NA    +  + +     P +   +  R+     
Sbjct: 1   MDHAIYTAMGAARQTLEQQSVTANNLANASTPGFRAQLSALRAVPVDGPSLLTRTLVTAS 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +  +     R L         ++               L+ S           +
Sbjct: 61  TPGADMSQGALNYTARPLDVALQQDGFLAVSLPDGGEAYTRNGNLQISSTGQLTVQGRPV 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
           +G           +    +   +  + A        +I  L
Sbjct: 121 MGDGGPIEVPPSAEITIAADGTISALNAGDPPNTLAQIGRL 161


>gi|283850788|ref|ZP_06368074.1| flagellar basal body rod protein [Desulfovibrio sp. FW1012B]
 gi|283573711|gb|EFC21685.1| flagellar basal body rod protein [Desulfovibrio sp. FW1012B]
          Length = 121

 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
               V+L  ++  +    +++  +  +I   D M  TLL+ 
Sbjct: 79  AVSDVDLAGQVVSMTLASRTFEANAAVIRTADDMAGTLLDL 119


>gi|167576663|ref|ZP_02369537.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis
           TXDOH]
          Length = 241

 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/114 (8%), Positives = 21/114 (18%), Gaps = 1/114 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + A+     +  +      A    N+ NA    + R +     S              N 
Sbjct: 1   MDALIYTVMSGADRTLHGIAVHANNMANAQTDGF-RAELEMAESQAVRGYGYDSRHLLNP 59

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               L+  +  +                   D                 +    
Sbjct: 60  RANALNGEAGVVADTGRELDAAINGSGYFTVDTQGGEAYTRAGNFEIDADGALT 113


>gi|77165840|ref|YP_344365.1| flagellar basal-body rod protein FlgC [Nitrosococcus oceani ATCC
          19707]
 gi|254433209|ref|ZP_05046717.1| flagellar basal-body rod protein FlgC [Nitrosococcus oceani
          AFC27]
 gi|76884154|gb|ABA58835.1| Flagellar basal-body rod protein FlgC [Nitrosococcus oceani ATCC
          19707]
 gi|207089542|gb|EDZ66813.1| flagellar basal-body rod protein FlgC [Nitrosococcus oceani
          AFC27]
          Length = 137

 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          MSL  VF+ A    +  + +  +   N+ NAD+ +      Y  R  +    
Sbjct: 1  MSLFKVFDIAGTAMSAQTLRLNTTASNLANADSVSSSIDQTYRARQPVFATL 52


>gi|330811238|ref|YP_004355700.1| flagellar basal-body rod protein [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327379346|gb|AEA70696.1| Putative flagellar basal-body rod protein [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 135

 Score = 37.7 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT 44
          MS+         +   +  +Q+   +  NI NAD  NY  RD   +
Sbjct: 1  MSISFDKALGIHEQALSFRAQRAEVLANNIANADTPNYKARDLDFS 46


>gi|302553644|ref|ZP_07305986.1| peptidase [Streptomyces viridochromogenes DSM 40736]
 gi|302471262|gb|EFL34355.1| peptidase [Streptomyces viridochromogenes DSM 40736]
          Length = 550

 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/396 (7%), Positives = 73/396 (18%), Gaps = 6/396 (1%)

Query: 33  NKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSA 92
              Y RR          V    ++  N       +    ++        S+   +     
Sbjct: 18  TAGYSRRTA----LAAPVVEAKEKLVNDRHPSGTMTPAPASDADSAHYASYGTQEAQYGD 73

Query: 93  DDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152
              Y +               ++          T     +      +T A +        
Sbjct: 74  FTTYGDYAATGFDATGTDGSGFAATGHTTASFATDPLFGDLPDSGHHTGAYDTGHWPTGT 133

Query: 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQR--DVLLQKISEIIGISTI 210
            + +  +    +   +            T  +            D   Q  +        
Sbjct: 134 HENVHYDAYAAQHHAAAYDTGVYDTTSWTTGQPLPVIPPQATSPDATGQWDTGAWHQPDQ 193

Query: 211 VRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKG 270
             N  D       GT  F+T   D      +     +                 +    G
Sbjct: 194 SGNPADQTQQWDWGTQSFDTGAYDATQWNADGTAAAAPEAYEQHGEAFDQLETATFEQVG 253

Query: 271 KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKL 330
             ++   +                   +    +    A           A          
Sbjct: 254 YDESTGALHLDPAADGGEPATTGELPTVAPLLDGQEEATPPPGSRTASRAASRSRRRTPP 313

Query: 331 CQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP 390
            +    TI V        + +      S       +      D       + N       
Sbjct: 314 KRSALMTIAVPSACVMGVAGIAAASVGSLTEDSAAEAHTTAADAQPVKPAAANNKLDTQL 373

Query: 391 VAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
            +         + A  +   ++     + +    ++
Sbjct: 374 KSLSAGADDFADRASRTQERIDLKAQQAAERKRAAE 409


>gi|78067839|ref|YP_370608.1| flagellar basal body rod protein FlgC [Burkholderia sp. 383]
 gi|77968584|gb|ABB09964.1| Flagellar basal-body rod protein FlgC [Burkholderia sp. 383]
          Length = 141

 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NAD+        Y  +  +    P   
Sbjct: 3  SLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGG 57


>gi|94987301|ref|YP_595234.1| flagellar basal body rod protein [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731550|emb|CAJ54913.1| Flagellar basal body rod protein [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 146

 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTIS 46
          M  +  F+   +  +           N+ NA      +   Y R+  +   +
Sbjct: 1  MDFMTAFDIGASALSADRTTINVTAMNLANAKTTRTPEGGPYRRKTVIRAAT 52


>gi|75675315|ref|YP_317736.1| flagellar basal body rod protein FlgF [Nitrobacter winogradskyi
           Nb-255]
 gi|74420185|gb|ABA04384.1| Flagellar basal body rod protein [Nitrobacter winogradskyi Nb-255]
          Length = 255

 Score = 37.7 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 47/216 (21%), Gaps = 8/216 (3%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQRSENKNMFDKVLHA----HSS 72
           +Q   I  N+ N     Y    ++      P          + +  F +           
Sbjct: 17  RQMDVIANNVANVTTNGYKADHSLFNEYLMPGAHEDNFVGRDRRLSFVQDRATFHDFAGG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT--VIDN 130
              Q +                  N         L+ + +          +  +   I  
Sbjct: 77  PTEQTKNPLDVAIDGNAFLVVQTPNGERYTRDGGLQINAQGQLVTAGGHPVLGSNGPIRF 136

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
            +       +    V  I    +    +          ++  +        A+       
Sbjct: 137 QQTDRNITISDDGTVTVIEGINNATNAIRGRLRLVSFPQVQRLVKEGSNLYAAGEGNFAR 196

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTT 226
            D +  + Q   E   ++ +   +  + V  +    
Sbjct: 197 QDTQARINQGFIERSNVNAVTEMSRLVEVSRAYTQM 232


>gi|71278001|ref|YP_268219.1| flagellar basal-body rod protein FlgB [Colwellia psychrerythraea
          34H]
 gi|71143741|gb|AAZ24214.1| flagellar basal-body rod protein FlgB [Colwellia psychrerythraea
          34H]
          Length = 132

 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 12/36 (33%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
                 SQ+   I  NI NAD   Y  +      +
Sbjct: 13 TQGMLIRSQRAEVIASNIANADTPGYKAKGLDFNQA 48


>gi|295678060|ref|YP_003606584.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1002]
 gi|295437903|gb|ADG17073.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1002]
          Length = 141

 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENV 50
          SL+ +F  A +  +  S++      N+ NA          Y  +  +  ++P   
Sbjct: 3  SLMNIFGVAGSAMSAQSERLNVTASNLANADSTTGPDGQPYKAKQVIFAVNPIGG 57


>gi|255521621|ref|ZP_05388858.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL
          J1-175]
          Length = 106

 Score = 37.7 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 7/32 (21%)

Query: 6  VFNKAQNICNNASQQFASIVRNIENADNKNYV 37
                    N  Q       N+ NA    + 
Sbjct: 3  GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFK 34


>gi|308094613|ref|ZP_05890642.2| flagellar basal-body rod protein FlgB [Vibrio parahaemolyticus
           AN-5034]
 gi|308090130|gb|EFO39825.1| flagellar basal-body rod protein FlgB [Vibrio parahaemolyticus
           AN-5034]
          Length = 172

 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 4/42 (9%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQR 56
           +    I  NI  A+   Y  R          +    ++   R
Sbjct: 62  RNAEVISTNIAQANTPGYKARGLDFAKELQAATSGASIGLSR 103


>gi|91776306|ref|YP_546062.1| flagellar basal-body rod protein FlgB [Methylobacillus
          flagellatus KT]
 gi|91710293|gb|ABE50221.1| flagellar basal-body rod protein FlgB [Methylobacillus
          flagellatus KT]
          Length = 131

 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 7/42 (16%)

Query: 12 NICNNASQQFASIVR-------NIENADNKNYVRRDTMTTIS 46
             N          +       NI NAD   Y  RD     +
Sbjct: 6  AALNFHQTALRVRGQRQELLAANIANADTPGYKARDINFADT 47


>gi|15616300|ref|NP_244605.1| flagellar basal-body rod protein [Bacillus halodurans C-125]
 gi|10176362|dbj|BAB07457.1| flagellar basal-body rod protein [Bacillus halodurans C-125]
          Length = 274

 Score = 37.7 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/186 (8%), Positives = 49/186 (26%), Gaps = 2/186 (1%)

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
              L+ + +  D                          +        N  +  +      
Sbjct: 83  QGDLVETQNNTDVALLQGVMPTNEENGQPWALFYTVQNENGEVRYTRNGNFTVDGDGFLT 142

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINT--NVTLLEYARNSIGWL 411
            G        +   L    +  N   D    +     +  IN       ++  +   G L
Sbjct: 143 TGDGFYVLGTDGNPLQVNNEWFNVDGDGMITDEAGAAIGQINVVVAEDPMQLVKEGNGLL 202

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
                      + +  V   + + +     V+  + ++ +++  +++  + +++   D+ 
Sbjct: 203 RFEGDGELPTGVGNAAVNYQLQQGFIERSNVDAAQTMTEMMQAYRTFEANQQVLRAYDES 262

Query: 472 LQTLLE 477
           L   + 
Sbjct: 263 LGKAVN 268


>gi|309779445|ref|ZP_07674206.1| flagellar basal-body rod protein FlgC [Ralstonia sp. 5_7_47FAA]
 gi|308921686|gb|EFP67322.1| flagellar basal-body rod protein FlgC [Ralstonia sp. 5_7_47FAA]
          Length = 135

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSL  V + A +     S++   +  N+ NA
Sbjct: 1  MSLFKVMDVAGSALTAQSKRMNVVASNLANA 31


>gi|298712115|emb|CBJ32995.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 438

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 11/97 (11%)

Query: 378 YCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYS 437
             D  + N      A  NT  T+ +                  +      V +   ++  
Sbjct: 160 LADDIHANLADTQAAVANTQATVADTQATVADTQATVADTHATVADTHATVADT--QAKV 217

Query: 438 NTVGVNLQ---EELSFLIKVEQSYNISNKLIMFTDKM 471
             +  +L    EE++ L K +  Y      +    +M
Sbjct: 218 EQIATDLDDKLEEMTRLAKTQAGYEA----MQT--EM 248


>gi|42526721|ref|NP_971819.1| flagellar basal-body rod protein FlgB [Treponema denticola ATCC
          35405]
 gi|41817036|gb|AAS11730.1| flagellar basal-body rod protein FlgB [Treponema denticola ATCC
          35405]
 gi|325473783|gb|EGC76971.1| FlgB protein [Treponema denticola F0402]
          Length = 139

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
             +  S ++     N+ N+D  N+ R +     
Sbjct: 15 RALDVNSLRYTVTSNNLANSDVPNFKRTEVNFES 48


>gi|328475671|gb|EGF46420.1| flagellar basal body rod protein FlgB [Listeria monocytogenes
          220]
          Length = 139

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 27/85 (31%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
           N        +  NI NA+  N+   +     S  +    + ++  ++  +         
Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESFGSSLRASGQNSIESAGNLTKTNTKHL 71

Query: 74 IGQQRLLQSFEALKEMMSADDHYNN 98
           G      + +   +  S ++  NN
Sbjct: 72 AGTDIDETNAKVTTKSGSINEDGNN 96


>gi|317406204|gb|EFV86453.1| flagellar basal-body rod protein [Achromobacter xylosoxidans C54]
          Length = 135

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                Q    +  NI NAD  NY  RD     + +N    ++R  + ++      
Sbjct: 17 GLRAQRQ--EVLSSNIANADTPNYKARDFDFKAAMQNAMEGSKRLPDTSLTLTSAR 70


>gi|239995124|ref|ZP_04715648.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii ATCC
           27126]
          Length = 247

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 6/222 (2%)

Query: 254 IDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313
           +   + ++N  +A   G    L Q R   +P +   L      +  S S         + 
Sbjct: 17  LGTGIRANNLANAQTTGFRAQLEQAR--SMPAYGEGLPTRVFSMTESPSNNYESGPMIKT 74

Query: 314 VPGLFIADGIKDLDNKLCQGISETICVNPQYR-SNPSFLRDGGSVSKKFLWNVKNLAGYP 372
              L +A           Q   E    +  ++  +   L D              L    
Sbjct: 75  DRDLDVAIQGDGWFAVQDQNGQEAYSRDGNFKLGDDGILTDIHDRVVLGDNGPIFLPVPL 134

Query: 373 DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH- 431
           D +N   D           A +   V  L+    +   +E+       +   S    N  
Sbjct: 135 DNLNIAADGTLSMRQLGAPANVIEEVGRLKLVSPNYADMERGNDGLFRMEDGSIAPANAN 194

Query: 432 --ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
             +         VN  +E+  +I +++ Y +  K++   +++
Sbjct: 195 VKVMSGMLEGSNVNAVDEMVDMISLQRHYELQVKMMKQAEEL 236


>gi|222055648|ref|YP_002538010.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32]
 gi|221564937|gb|ACM20909.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32]
          Length = 139

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 6/54 (11%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADN----KN--YVRRDTMTTISPENVTV 52
               + +       +   I  N+ NA++    +   Y R+D +     +  + 
Sbjct: 2  DAMEISASALTAERTRMNLISSNLANANSTRTDEGGQYRRKDAVFATVLDGASA 55


>gi|33592476|ref|NP_880120.1| flagellar basal body rod protein FlgB [Bordetella pertussis
          Tohama I]
 gi|33572122|emb|CAE41664.1| flagellar basal-body rod protein FlgB [Bordetella pertussis
          Tohama I]
 gi|332381893|gb|AEE66740.1| flagellar basal body rod protein FlgB [Bordetella pertussis CS]
          Length = 135

 Score = 37.7 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50
                Q    +  NI NAD  NY  RD     + +  
Sbjct: 17 ALRAQRQ--EVLSSNIANADTPNYKARDFDFKAAMQGA 52


>gi|213419605|ref|ZP_03352671.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 29

 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 21/29 (72%)

Query: 450 FLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            +I+V+++Y I++K +  TD+MLQ L + 
Sbjct: 1   NMIQVQRAYEINSKAVSTTDQMLQKLTQL 29


>gi|78485811|ref|YP_391736.1| hypothetical protein Tcr_1470 [Thiomicrospira crunogena XCL-2]
 gi|78364097|gb|ABB42062.1| Flagellar basal-body rod protein FlgF [Thiomicrospira crunogena
           XCL-2]
          Length = 245

 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNR 415
            V    + N                  +    F P    N    +L+  R     +++  
Sbjct: 115 DVHGNPVLNEGGAPINIPPAKSIQIGSDGTISFIPADSTNNLAVVLDQVRLVQPDIKQLE 174

Query: 416 SDSHDLHMKSQVVFNH----ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468
                    +          +      +  VN  E L+ +I++ + Y +  K++  +
Sbjct: 175 KGLDGYIRNNGAELEQAPIRVVSGALESSNVNTVEALTNMIELSRKYEMQIKMMSTS 231


>gi|15896823|ref|NP_350172.1| hypothetical protein CA_C3589 [Clostridium acetobutylicum ATCC 824]
 gi|15026686|gb|AAK81512.1|AE007855_4 Uncharacterized conserved membrane protein, YHGE B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510997|gb|ADZ22633.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 783

 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 41/412 (9%), Positives = 103/412 (25%), Gaps = 27/412 (6%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           +L +  N A            +                      S  +         +  
Sbjct: 216 TLSSGLNTAATGSQALKSGLDT--------------------AASGSSTLGNGIYQLSNG 255

Query: 62  MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
                    S+  G   L      L +  S     +      +S+ + SL + S   S  
Sbjct: 256 NTTIKNGLFSALSGSSNLNGGLNQLLDGQSQIVKGSKDLLDGLSQFKSSLSNGSDMSSLS 315

Query: 122 ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                +  ++  ++QN + +A +      DA+++I+  +  L +   +       ++   
Sbjct: 316 TATGAISKSSSAILQNSSQTASK----AGDANQKIQDAMDALNK--GDTATALSKLQDAK 369

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMN 241
           +           +     K  + I  +  +   +D +      +            ++  
Sbjct: 370 SDASTIQSLNSPQAPAPNKAPDNITAAATIGKISDAIPEQVKASVTETQQKAGAAVDQFI 429

Query: 242 SYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301
           + T   +     +   + S+  GS      +  L    + +     +       +  G  
Sbjct: 430 AGTSKLKQGSKQVYDGLSSAASGSKDLSSGLTQLYDGSNKLQNGLNSAYAGSLNLTTGLN 489

Query: 302 SEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361
           +        S  +  L       +         ++T+       ++ +     G      
Sbjct: 490 TASAKTGELSTGLGTLNSGSQALNSGIGTLNTGAQTLNNGIGTLNDGTTKLKDGLNDGYN 549

Query: 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
             N K       + N      + +              L  Y  +   WL  
Sbjct: 550 TLNNKLKFTSTTMGNFVSSPISLSDKSINTVSKYGEG-LAPYFISLSLWLGA 600


>gi|332558510|ref|ZP_08412832.1| FlgC [Rhodobacter sphaeroides WS8N]
 gi|332276222|gb|EGJ21537.1| FlgC [Rhodobacter sphaeroides WS8N]
          Length = 138

 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS + +VFN      +    +  ++  N+ NA   
Sbjct: 1  MSGIDSVFNVGARALSAQMVRMNTVASNLANAGTV 35


>gi|297617135|ref|YP_003702294.1| flagellar basal-body rod protein FlgB [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144972|gb|ADI01729.1| flagellar basal-body rod protein FlgB [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 138

 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 7/23 (30%)

Query: 23 SIVRNIENADNKNYVRRDTMTTI 45
           I  N+ N D   Y   +     
Sbjct: 27 VIANNLANVDTPGYKAMEVTFEE 49


>gi|2105145|gb|AAB57896.1| FlgB [Treponema denticola]
          Length = 139

 Score = 37.7 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
             +  S ++     N+ N+D  N+ R +     
Sbjct: 15 RALDVNSLRYTVTSNNLANSDVPNFKRTEVNFES 48


>gi|271500067|ref|YP_003333092.1| flagellar basal-body rod protein FlgF [Dickeya dadantii Ech586]
 gi|270343622|gb|ACZ76387.1| flagellar basal-body rod protein FlgF [Dickeya dadantii Ech586]
          Length = 251

 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 55/217 (25%), Gaps = 3/217 (1%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A    +   +Q A    N+ NA    +  +       P        R+   + 
Sbjct: 1   MDHAIYTAMGAASQTLEQQAVTSHNMANASTPGFRAQLAAMRAVPIQGVTNETRTLVVSS 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
              V     S     R +    +    ++      +        +  +           +
Sbjct: 61  TPGVDTTPGSMDYTGRSMDVALSQDGWLAVRAADGSEAYTRNGNMEINSNGQLTVQGNLV 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +G           Q        +  +      +    ++ + R        N+ ++    
Sbjct: 121 MGDGGPIEVPPQTQLTIGPDGTINALN---PSDAANTVTQIGRLKLVKATANEVVRGDDG 177

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
               +     QR  +LQ  + +  +  ++  +N   V
Sbjct: 178 FFRVSPAVQQQRGAVLQNDATVRVMPGVLEGSNVNTV 214


>gi|254434266|ref|ZP_05047774.1| flagellar basal-body rod protein FlgB [Nitrosococcus oceani
          AFC27]
 gi|207090599|gb|EDZ67870.1| flagellar basal-body rod protein FlgB [Nitrosococcus oceani
          AFC27]
          Length = 148

 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 1  MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          MS+   +            S++   +  N+ N D   Y  RD     + +      
Sbjct: 18 MSISFDSALGIYPQAVTLGSRRAEVLAANLANGDTPGYKARDIDFKAALQQAQGQG 73


>gi|322832565|ref|YP_004212592.1| flagellar basal-body rod protein FlgF [Rahnella sp. Y9602]
 gi|321167766|gb|ADW73465.1| flagellar basal-body rod protein FlgF [Rahnella sp. Y9602]
          Length = 251

 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 50/201 (24%), Gaps = 3/201 (1%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
           +    N+ NA+   +  +       P +   +  R+                    R L 
Sbjct: 20  SVTSSNLANANTPGFRSQLLAMRAVPVDGESLQTRTLVTASTPGADMTQGKLNYTGRPLD 79

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                   ++      +        ++ S  +        ++G           Q   ++
Sbjct: 80  VALQQDGFLAVQMPDGSEAYTRNGDMQVSPTNQLTVQGHPVMGDNGPIEVPPNSQLTVSA 139

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
              +  + A AD      +  L +        N+  +            +  R   LQ  
Sbjct: 140 DGTIAVLEAGADPN---TMGQLGKLKLVKAANNEVTRGDDGMFRPTPATVQARGAALQPD 196

Query: 202 SEIIGISTIVRNNNDMVVYTS 222
             I  +   +  +N   V T 
Sbjct: 197 PTIHVMPGTLEGSNADPVSTM 217


>gi|256111963|ref|ZP_05452914.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3
          str. Ether]
 gi|265993412|ref|ZP_06105969.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3
          str. Ether]
 gi|262764282|gb|EEZ10314.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3
          str. Ether]
          Length = 243

 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 11/45 (24%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
                  +      ++  +I  N+ NA    +    T       
Sbjct: 3  NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVS 47


>gi|163789653|ref|ZP_02184091.1| flagellar basal-body rod protein FlgB [Carnobacterium sp. AT7]
 gi|159875185|gb|EDP69251.1| flagellar basal-body rod protein FlgB [Carnobacterium sp. AT7]
          Length = 125

 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 11 QNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ 55
          +N  + AS +   I  NI N +   Y           +NV+  T 
Sbjct: 9  KNALDAASMRQEMISSNIANVNTDGYKVNKVEFESILDNVSKGTT 53


>gi|30059155|gb|AAO65441.1| FliC [Escherichia coli]
          Length = 466

 Score = 37.7 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 44/463 (9%), Positives = 125/463 (26%), Gaps = 23/463 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL +   +  +     S +  +  + I N             T + + +T  ++ + +  
Sbjct: 6   SLSSAIERLSSGLRINSAKDDAAGQAIAN-----------RFTANIKGLTQASRNANDGI 54

Query: 62  MFDKVLHAH-SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      +      + ++         +  D    S    I +    ++  S     
Sbjct: 55  SVAQTTEGALNEINNNLQRIRELSVQATNGTNSDSDLTSIQSEIQQRLSEIDRVSGQTQF 114

Query: 121 DILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           + +     D    +     +  T   ++Q+I +D        I +  +  +         
Sbjct: 115 NGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTKLKAATAETTYFG 174

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +  D      V           + +   N  + V  +      E    ++  
Sbjct: 175 STVKLADANTLDADITATVKGTTTPGQRDGNIMSDANGKLYVKVAGSDKPAENGYYEVTV 234

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E   +     +     + G    +     V   K K  + ++        +        L
Sbjct: 235 EDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTATASITGAKLFKL 294

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +  +         +    + A+  +       + +S T     ++ +    L      
Sbjct: 295 EDANGKDTGSFALIGDDGKQYAANVDQKTGAVSVKTMSYTDADGVKHDNVKVELGGSDGK 354

Query: 358 SKKFLWNVKNLAGYPDLI-----NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           ++             DL           + +     DP+A I+  ++ ++   +    L 
Sbjct: 355 TEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQVD---SLRSNLG 411

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
             ++             N++S + S     +   E+S + + +
Sbjct: 412 AIQNRFDSAITNLGNTVNNLSSARSRIEDADYATEVSNMSRAQ 454


>gi|332296517|ref|YP_004438440.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179620|gb|AEE15309.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM
           14796]
          Length = 251

 Score = 37.7 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
           P+ +R     +     N + +      +    ++       + V   + ++ +     ++
Sbjct: 109 PNGIRYTRDGNFTLNNNDELVTQDGYPVLSSANAPITIDGQNVVISSDGSIQVDGQQTDT 168

Query: 408 IGWLEKNR------SDSHDLHMKSQVVFNH---ISESYSNTVGVNLQEELSFLIKVEQSY 458
           +G +  +         S+  +   QVV      + + Y  +  VN   E+  +I +E++Y
Sbjct: 169 LGIVSLDNPSLIVPQGSNLYNYNGQVVNASNFKVLQGYLESSNVNTVREMVDMIALERAY 228

Query: 459 NISNKLIMFTD 469
               K I+  D
Sbjct: 229 ESGQKAIVTED 239


>gi|302392399|ref|YP_003828219.1| flagellar basal-body rod protein FlgB [Acetohalobium arabaticum
          DSM 5501]
 gi|302204476|gb|ADL13154.1| flagellar basal-body rod protein FlgB [Acetohalobium arabaticum
          DSM 5501]
          Length = 135

 Score = 37.7 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 5  AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
          +V  KA +      Q+  +I  NI N D  +Y R+D     
Sbjct: 11 SVLTKALDGL---QQRQEAISNNIANVDTPDYKRKDVNFKS 48


>gi|284794796|gb|ADB93722.1| gp29 [Mycobacterium phage RedRock]
          Length = 832

 Score = 37.7 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 31/373 (8%), Positives = 89/373 (23%), Gaps = 13/373 (3%)

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDN 130
                          L++ ++    +        ++   S  + +   S           
Sbjct: 218 QGVTDALTKGAGPAQLEQFLANTKGFFEQLQPVANQFTQSFLTLANAGSGAF-------- 269

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
              +  +    + +   +          + +      +   V N   +   +        
Sbjct: 270 -GYLTGSLEKFSTQFNDMVNRVTSNGVFDGAMKGLSQTLDGVTNLFTRLMESGLQAMSQL 328

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESN 250
               +  L  I +++  +     +   ++    GT      P         +    +   
Sbjct: 329 GGPLNTFLTGIGDLLVAAMPALTSFASLIGNVLGTLGTALAPIVTALTPAFTMLADTLGT 388

Query: 251 PIFIDGVVVSSNQGSAVP--KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308
            +  +   +S           G +   LQ    ++P       ++A VL+ S +   P  
Sbjct: 389 LLTSNLQALSPVLTQVATLLGGTLTTALQAIQPMLPGLMESFSQLANVLVTSLAPHIPAL 448

Query: 309 GNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL 368
             +              +  +L     + +    +    PS +    S +      +   
Sbjct: 449 ATAFGQLVGAAVQLAPMIMQQLVPAFVQLVPKIAEML--PSIVSLVQSFASLMPVVLPLA 506

Query: 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVV 428
           +    +                 A  N    +         W+    S +  +   +  +
Sbjct: 507 SALLSVAGAAIQVGVSIGGALIGAMANLMGIISGVIARVAEWVSSFASGASQIAATAAQL 566

Query: 429 FNHISESYSNTVG 441
              I  + SN + 
Sbjct: 567 PGQIQAALSNLMN 579


>gi|307138590|ref|ZP_07497946.1| hypothetical protein EcolH7_10745 [Escherichia coli H736]
 gi|331642545|ref|ZP_08343680.1| bacterial flagellin N-terminus subfamily [Escherichia coli H736]
 gi|331039343|gb|EGI11563.1| bacterial flagellin N-terminus subfamily [Escherichia coli H736]
          Length = 420

 Score = 37.7 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 35/404 (8%), Positives = 119/404 (29%), Gaps = 11/404 (2%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                + + ++  +     + +     + +    L+   + DD    +  +  +     L
Sbjct: 2   AQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              ++N ++       I  A+      +     +Q++R +   +     ++     S   
Sbjct: 62  TQAARNAND------GISVAQTTEGALSEINNNLQRVR-ELTVQATTGTNSESDLSSIQD 114

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   ++                     K++  +G +       D+    S    L    
Sbjct: 115 EIKSRLEEIDRVSSQTQFNGVNVLAKDGKMNIQVGANDGQTITIDLKKIDSSTLNLSSFD 174

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++     +  T+  +      D    +S     +   +      + D+    + +   
Sbjct: 175 ATNLGTSVKDGATINKQVAVGAGDFKDKASGSLGTLKLVEKDGKYYVNDTKSSKYYDAEV 234

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + ++  I  F+  +           +        LD    +     +    +  ++   +
Sbjct: 235 DTSKGEIN-FNSTNESGTTPTAATEVTTVGRDVKLDASALKANQSLVVYKDKSGNDAYII 293

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +     + +  +N  N++    L      +   N   DP+  ++  +  ++  R+S+G +
Sbjct: 294 QTKDVTTNQSTFNAANISDAGVLSIGASTTAPSNLTADPLKALDDAIASVDKFRSSLGAV 353

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +     +      +    +       +    +   E+S + K +
Sbjct: 354 QNRLDSAIANLNNTTTNLSEAQSRIQDA---DYATEVSNMSKAQ 394


>gi|78188592|ref|YP_378930.1| parallel beta-helix repeat-containing protein [Chlorobium
             chlorochromatii CaD3]
 gi|78170791|gb|ABB27887.1| Parallel beta-helix repeat [Chlorobium chlorochromatii CaD3]
          Length = 36805

 Score = 37.7 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/413 (6%), Positives = 94/413 (22%), Gaps = 6/413 (1%)

Query: 29    ENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKE 88
              N  ++ +   +       +   V  +R          L   + A     +      L  
Sbjct: 23615 ANVGSEGFFVTEATAVTVGQTAAVTVKRVNADG---STLTDTTDAAQSNLVSTGHLVLVT 23671

Query: 89    MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
                +    +         +   L       ++  LG  V  +             +    
Sbjct: 23672 TAGSVTTLSTGALTATGNM---LVQAVDAEADITLGAAVSSSGAASANINVAHGSDTTYD 23728

Query: 149   RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             R      + ++ +     + +   ++       A         D  D      +      
Sbjct: 23729 RTIDLSNLSVQSNTTYSVIIDGKALSYKSGTDDALNEIGEGLKDAIDADSYVATYDGNTH 23788

Query: 209   TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
              I   +       S       ++    +  + ++ T    +  + +      +       
Sbjct: 23789 VITITSGAGTSTISVSIAASISLNAGHDIFQNSTITTNGYAGTVDLRAGHDITMANGTST 23848

Query: 269   KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
                   +L   D  V +    +         + +++   +    +V     A  I D + 
Sbjct: 23849 STNDGNILVYADGTVKLGLLDVRTTGDRSGNTLTKQSDASNPWGSVSVTSTAGSILDNNG 23908

Query: 329   KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
                   +  + +        +       +  +      N+      I    D        
Sbjct: 23909 TAVNVYANELKLTATPAGTGAVGIGAEHLETEVATLSANVGSGGLFITEATDITVGQTAT 23968

Query: 389   DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                  ++   ++ +   ++        +    +   +  +   ++    +  G
Sbjct: 23969 VLTNRVSGTASVTDSTESATTQSNLTSAGHVVVQTVAGSITTVVTNGNISAAG 24021


>gi|193069522|ref|ZP_03050476.1| flagellar basal-body rod protein FlgC [Escherichia coli E110019]
 gi|192957270|gb|EDV87719.1| flagellar basal-body rod protein FlgC [Escherichia coli E110019]
          Length = 134

 Score = 37.7 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +     SQ+    V N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAVSNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|226944493|ref|YP_002799566.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ]
 gi|226719420|gb|ACO78591.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ]
          Length = 251

 Score = 37.7 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/167 (8%), Positives = 43/167 (25%), Gaps = 12/167 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTV----VTQRSE 58
           +  +   A +    +  Q A +  N+ NA    +  +       P +       V+ R+ 
Sbjct: 1   MDRMLFTAMSGAKQSLDQQAVVAHNLANAVTPGFRAQLMELQAVPVDGEGLPTRVSVRAT 60

Query: 59  NK--NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +       ++ A++          +        ++        
Sbjct: 61  TSGVDFSQGPVTRTGRPLDVALDGNAWLAIQ------AADGSEAYTRRGDVQIDGNGLMT 114

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                ++G           Q    +   V  +    D +    ++ L
Sbjct: 115 VAGHPLIGDGGPLTVPLGSQVSIGADGTVSVVEEGQDPDTSAVVARL 161


>gi|296121299|ref|YP_003629077.1| AmoP [Planctomyces limnophilus DSM 3776]
 gi|296013639|gb|ADG66878.1| AmoP [Planctomyces limnophilus DSM 3776]
          Length = 1882

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 39/406 (9%), Positives = 93/406 (22%), Gaps = 8/406 (1%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI 104
            +P    +        +   + + A S          +        +  D  N+      
Sbjct: 530 TTPTGGGLNLVTDLTVDDQGRTVLALSPVHFIDIEGTATVIRTASYAVYDDVNHVVYQAR 589

Query: 105 SKLRDSLESY-SKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                + +SY   N    +L        E +    +T+   + +  A  +    + +   
Sbjct: 590 GWWNPATDSYELINPVVIVLHDAGGKVLERIQATASTTTGSLAEYVAATNSGGTVPLGGF 649

Query: 164 RRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSD 223
            +      V  +      A+    +  +      +   +                  T  
Sbjct: 650 PQLSYTRWVTYEYTDCCLAAFQRIYHTIPTSGTGVSGTNYDQTTYGYDAMKRRNRTVTPG 709

Query: 224 GTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA-VPKGKIKALLQIRDSV 282
           GT  F+              T    +      G  V  +     +   +        D  
Sbjct: 710 GTISFQVFDARGLVSATYIGTNDDGATEQDPTGGGVDPDNNMVVIISNQYDGGTDGGDGN 769

Query: 283 VPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
           +      +D     +     +       ++     F      +LD    Q   +T  +  
Sbjct: 770 LTEVTQHVDASTIRVTSYGYDWRNRQVTTDGEIDYFAKKTYDNLDQVTLQQQYDTTILGN 829

Query: 343 QYRSNPSFL----RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
               + +      R   S+          +         Y  S N        + +    
Sbjct: 830 LIAQSETKFDNQGRTYQSIQYGVDPATGTIGNNLVSNTWYDASGNVVKSLPAGSSLFGKT 889

Query: 399 TLLEYARNSIGWLE--KNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
           T     R    +     + + +    + +  V      +Y +T  V
Sbjct: 890 TFDGIGRAIANYSGYGTDATYADIFDVINNTVLEQTETTYDSTSNV 935


>gi|148380623|ref|YP_001255164.1| flagellar basal-body rod protein FlgB [Clostridium botulinum A
          str. ATCC 3502]
 gi|153932093|ref|YP_001384909.1| flagellar basal body rod protein FlgB [Clostridium botulinum A
          str. ATCC 19397]
 gi|153937135|ref|YP_001388378.1| flagellar basal body rod protein FlgB [Clostridium botulinum A
          str. Hall]
 gi|153941113|ref|YP_001391965.1| flagellar basal body rod protein FlgB [Clostridium botulinum F
          str. Langeland]
 gi|168183266|ref|ZP_02617930.1| flagellar basal-body rod protein FlgB [Clostridium botulinum Bf]
 gi|170757776|ref|YP_001782282.1| flagellar basal body rod protein FlgB [Clostridium botulinum B1
          str. Okra]
 gi|226950078|ref|YP_002805169.1| flagellar basal-body rod protein FlgB [Clostridium botulinum A2
          str. Kyoto]
 gi|237796105|ref|YP_002863657.1| flagellar basal-body rod protein FlgB [Clostridium botulinum Ba4
          str. 657]
 gi|148290107|emb|CAL84226.1| flagellar basal-body rod protein [Clostridium botulinum A str.
          ATCC 3502]
 gi|152928137|gb|ABS33637.1| flagellar basal-body rod protein FlgB [Clostridium botulinum A
          str. ATCC 19397]
 gi|152933049|gb|ABS38548.1| flagellar basal-body rod protein FlgB [Clostridium botulinum A
          str. Hall]
 gi|152937009|gb|ABS42507.1| flagellar basal-body rod protein FlgB [Clostridium botulinum F
          str. Langeland]
 gi|169122988|gb|ACA46824.1| flagellar basal-body rod protein FlgB [Clostridium botulinum B1
          str. Okra]
 gi|182673652|gb|EDT85613.1| flagellar basal-body rod protein FlgB [Clostridium botulinum Bf]
 gi|226842504|gb|ACO85170.1| flagellar basal-body rod protein FlgB [Clostridium botulinum A2
          str. Kyoto]
 gi|229262300|gb|ACQ53333.1| flagellar basal-body rod protein FlgB [Clostridium botulinum Ba4
          str. 657]
 gi|295319982|gb|ADG00360.1| flagellar basal-body rod protein FlgB [Clostridium botulinum F
          str. 230613]
          Length = 133

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
            N +S +   I  NI N +  +Y R       +
Sbjct: 19 SMNASSYRGKVISNNIANYNTPDYKRHYVTFEET 52


>gi|300725308|ref|YP_003714640.1| XhlA, cell surface associated hemolysin (TpsA) [Xenorhabdus
            nematophila ATCC 19061]
 gi|54310826|gb|AAV33651.1| XhlA [Xenorhabdus nematophila]
 gi|297631857|emb|CBJ92578.1| XhlA, Cell surface associated hemolysin (TpsA) [Xenorhabdus
            nematophila ATCC 19061]
          Length = 1470

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/422 (7%), Positives = 92/422 (21%), Gaps = 21/422 (4%)

Query: 12   NICNNASQQFASIVRNIE------NADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
            +              NI       N          T       +V +     +  N  + 
Sbjct: 765  SNLVTTQGDAKVTGENIALLAGENNTST------STSQEKVSSSVFITGGMDKFGNGAEG 818

Query: 66   VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGK 125
            V + +  +  Q     +   +   +  +            +++ + ++ + ++       
Sbjct: 819  VYNNNGQSQTQTTAAVTKNQVTGNLELNAMGELKQQGTDHQVQGTYQANAGSVKNVATAN 878

Query: 126  TVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
            T  ++  ++            +I   AD              +    ++ AI        
Sbjct: 879  TESNSTSQLQVG--------GEISGTADYSATTRPVEKTAKAAADKKLDTAITKTGLPNA 930

Query: 186  DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                 +D              ++ +   +  +           +                
Sbjct: 931  GLELAMDGNSRYTNNHKSNAVVTAVNAGDIKVTTNGDIYDQGTQYKANKNGVSLTAGSHT 990

Query: 246  TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
            +  ++    +    ++            A + +       +Q   D     +    + ++
Sbjct: 991  SEAASNHQNNHTSDTTGNARLRVYTTTGADVSVNGKGNGSYQETSDSNTHAVTSDINAEN 1050

Query: 306  PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             I  N               ++          I  N     N                  
Sbjct: 1051 GIHVNVTRDARYQGTSMN-AVNGSTHVNAGGNIQFNQATHRNEQQKHGYNGEISLTAGTN 1109

Query: 366  KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
             +   +   +    ++ N+N      + I     +   A N++     N S         
Sbjct: 1110 PDGKNFSGSLGGGYNTDNQNKTTAQTSTIKGGQGVNLDAGNNLALQGANVSGKQVDLTAQ 1169

Query: 426  QV 427
            + 
Sbjct: 1170 RG 1171


>gi|6502601|gb|AAF14368.1|AF133240_2 flagellar proximal rod protein FlgC [Rhodobacter sphaeroides]
          Length = 139

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1  MS-LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          MS + +VFN      +    +  ++  N+ NA   
Sbjct: 2  MSGIDSVFNVGARALSAQMVRMNTVASNLANAGTV 36


>gi|315649859|ref|ZP_07902942.1| fagellar hook-basal body protein [Paenibacillus vortex V453]
 gi|315274833|gb|EFU38214.1| fagellar hook-basal body protein [Paenibacillus vortex V453]
          Length = 281

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 1/240 (0%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
            ++ +NI N +   Y   +++    PE V V      + +   + L   ++ +  +  + 
Sbjct: 8   NTVTQNIANVNTAGYKATNSVQRSFPE-VLVSMIGGNDSSNAGRKLGKFNTGVYAEESIS 66

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
            +       +  +      + +  +   + + Y  + S   + +                
Sbjct: 67  LYTEGALRETGKNTDFALVSSFTVQNPATGQDYPFDASGRYVDENGEVIYRPEGFFTVQD 126

Query: 142 AREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI 201
                +   +    +  E + L     ++   N+     T S  D         +     
Sbjct: 127 ENGDTRYTRNGSFRVSPEGNLLSESGYQVLDNNNRPIILTGSASDFTVNEQGEIMDAAGN 186

Query: 202 SEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS 261
              I +   + +    ++   +G         ++ F       V  +      +     S
Sbjct: 187 GTGIILGVSIVSQPHGLIREGNGVFRMSDPDGEVRFMTPADNGVVRQGFIEGSNVDPTQS 246


>gi|291225209|ref|XP_002732594.1| PREDICTED: predicted protein-like, partial [Saccoglossus kowalevskii]
          Length = 1452

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 36/441 (8%), Positives = 114/441 (25%), Gaps = 39/441 (8%)

Query: 31   ADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMM 90
            A+   +  ++   ++      V T  +E  N+   +  A S                 ++
Sbjct: 1008 ANTSWFHIQELYNSVQGAGTRVQTLTNEVDNLLSIIQVAESEREA-----ADILINNNIL 1062

Query: 91   SADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150
              ++  N      I  ++     Y     ++ + +   +     +   +       ++  
Sbjct: 1063 LNENIQNTVLLTEIDNIQS---EYPVTEVQEKVDQAYSNAVSANISANSAIVYAETRLDE 1119

Query: 151  DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTI 210
               K    +I+     ++E + +       T        + +     +  +     + T 
Sbjct: 1120 ATAKAYSSQIAKYNTTMAETSTLKAQSAALTYKDAATWAYSNMSQYYVDMLDAYSRLQTS 1179

Query: 211  VRN--NNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
                 +   V     G T+      +   E++    ++ +     +     + N  ++  
Sbjct: 1180 QAQTASMQEVSTQILGMTVPGVDGMETLTEQILQTDISEQIVADTLASAEATLNNANSAL 1239

Query: 269  KGKIK---------ALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSE-----NV 314
               ++         AL+Q  ++ +   +N        L  + S    +   S        
Sbjct: 1240 NVSLEAETEAQGALALVQGIENTLKEAENVRAAAVESLAQTDSNITNVHDVSNEVIAKGA 1299

Query: 315  PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
                       +  ++   I        +  S  +    G + +K               
Sbjct: 1300 LEETKGQAALTMIAQIRLDILHAGQCFDEELSRANTAEAGANQAKANSEEAVESYTVNAA 1359

Query: 375  INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
                        + + V   N   T+ + A++ +  +      +  +    Q +      
Sbjct: 1360 AQSSISGQVDTVLVEKVIEYNEVKTVSDSAKSLMNDI-----TATAMMEDLQALLQQYIT 1414

Query: 435  SYSNTVGVNLQEELSFLIKVE 455
              +             ++  +
Sbjct: 1415 QRTEM----------DMLMAQ 1425


>gi|70731826|ref|YP_261568.1| flagellar basal body rod protein FlgB [Pseudomonas fluorescens
          Pf-5]
 gi|68346125|gb|AAY93731.1| flagellar basal-body rod protein FlgB [Pseudomonas fluorescens
          Pf-5]
          Length = 155

 Score = 37.3 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +++   +  NI NAD  NY  RD   +  
Sbjct: 21 MSISFDKALGIHEQALGFRAKRAEVLANNIANADTPNYKARDLDFSAV 68


>gi|229591870|ref|YP_002873989.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens
           SBW25]
 gi|229363736|emb|CAY51141.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25]
          Length = 246

 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/223 (8%), Positives = 50/223 (22%), Gaps = 17/223 (7%)

Query: 7   FNKAQNICNNASQQFA--SIVRNIENADNKNY------VRRDTMTTISPENVTVVTQRSE 58
              A      +    A  +   N+ N     +       R   +   S            
Sbjct: 5   LYVAMTG--ASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFALTERP 62

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
             +     +      +        + A++          +      + +        +  
Sbjct: 63  GTDFSPGAMIETGRDLDVAVSGNGWMAVQ------TPDGSEAYVRSASMNVDALGVLRAG 116

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRA-DADKEIELEISNLRRFLSELTVVNDAI 177
           +   +       A    Q     A     IRA      +  E+  ++    +L  +N  +
Sbjct: 117 NGMPIMGNGGPIAVPPQQKIEVGADGTISIRAMGEGPRVMAEVDRIKLVQPDLKNMNKGL 176

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                +K       D    L     +   ++ +      + + 
Sbjct: 177 DGTIHTKDGQPAQADATVTLTSGFLQASNVNAVEEMTAVLALS 219


>gi|298530646|ref|ZP_07018048.1| flagellar basal-body rod protein FlgB [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298510020|gb|EFI33924.1| flagellar basal-body rod protein FlgB [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 136

 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 4/24 (16%), Positives = 6/24 (25%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            +  N+ N     Y  R      
Sbjct: 24 NVVSSNLANVKTPGYQARRVEFEE 47


>gi|218662054|ref|ZP_03517984.1| hypothetical protein RetlI_22525 [Rhizobium etli IE4771]
          Length = 88

 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
              + +  +I  NI N+   +Y R +T  T            
Sbjct: 1  MRAQTTRIGAIANNIANSSTPDYARLNTSLTAVTSGGVKAVVS 43


>gi|62317080|ref|YP_222933.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 1
          str. 9-941]
 gi|83269073|ref|YP_418364.1| flagellar basal body rod protein FlgF [Brucella melitensis biovar
          Abortus 2308]
 gi|189022347|ref|YP_001932088.1| flagellar basal body rod protein FlgF [Brucella abortus S19]
 gi|225685989|ref|YP_002733961.1| flagellar basal body rod protein FlgF [Brucella melitensis ATCC
          23457]
 gi|237816642|ref|ZP_04595634.1| flagellar basal body rod protein FlgF [Brucella abortus str. 2308
          A]
 gi|254691431|ref|ZP_05154685.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6
          str. 870]
 gi|254695270|ref|ZP_05157098.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3
          str. Tulya]
 gi|254698369|ref|ZP_05160197.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2
          str. 86/8/59]
 gi|254731814|ref|ZP_05190392.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4
          str. 292]
 gi|256256617|ref|ZP_05462153.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9
          str. C68]
 gi|256262885|ref|ZP_05465417.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|260544321|ref|ZP_05820142.1| flagellar basal body rod protein [Brucella abortus NCTC 8038]
 gi|260757049|ref|ZP_05869397.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6
          str. 870]
 gi|260759580|ref|ZP_05871928.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4
          str. 292]
 gi|260762824|ref|ZP_05875156.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2
          str. 86/8/59]
 gi|260882859|ref|ZP_05894473.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9
          str. C68]
 gi|261215636|ref|ZP_05929917.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3
          str. Tulya]
 gi|297249974|ref|ZP_06933675.1| flagellar basal-body rod protein FlgF [Brucella abortus bv. 5
          str. B3196]
 gi|62197273|gb|AAX75572.1| FlgF, flagellar basal-body rod protein FlgF [Brucella abortus bv.
          1 str. 9-941]
 gi|82939347|emb|CAJ12294.1| Flagellar basal body rod protein [Brucella melitensis biovar
          Abortus 2308]
 gi|189020921|gb|ACD73642.1| Flagellar basal body rod protein [Brucella abortus S19]
 gi|225642094|gb|ACO02007.1| flagellar basal body rod protein [Brucella melitensis ATCC 23457]
 gi|237787455|gb|EEP61671.1| flagellar basal body rod protein FlgF [Brucella abortus str. 2308
          A]
 gi|260097592|gb|EEW81466.1| flagellar basal body rod protein [Brucella abortus NCTC 8038]
 gi|260669898|gb|EEX56838.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4
          str. 292]
 gi|260673245|gb|EEX60066.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2
          str. 86/8/59]
 gi|260677157|gb|EEX63978.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6
          str. 870]
 gi|260872387|gb|EEX79456.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9
          str. C68]
 gi|260917243|gb|EEX84104.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3
          str. Tulya]
 gi|263092722|gb|EEZ16931.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|297173843|gb|EFH33207.1| flagellar basal-body rod protein FlgF [Brucella abortus bv. 5
          str. B3196]
 gi|326410315|gb|ADZ67379.1| flagellar basal body rod protein FlgF [Brucella melitensis M28]
 gi|326553608|gb|ADZ88247.1| flagellar basal body rod protein FlgF [Brucella melitensis M5-90]
          Length = 243

 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 11/45 (24%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
                  +      ++  +I  N+ NA    +    T       
Sbjct: 3  NNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVS 47


>gi|146311244|ref|YP_001176318.1| flagellar basal body rod protein FlgC [Enterobacter sp. 638]
 gi|145318120|gb|ABP60267.1| flagellar basal-body rod protein FlgC [Enterobacter sp. 638]
          Length = 134

 Score = 37.3 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTT--ISPENVTV 52
          M+LL +F+ A +     SQ+      N+ NAD+        Y  +  +     +P   T 
Sbjct: 1  MALLNIFDIAGSALTAQSQRLNVAASNMANADSVTGPDGQPYRAKQVVFQVDAAPGGATG 60

Query: 53 VT 54
            
Sbjct: 61 GV 62


>gi|197265896|ref|ZP_03165970.1| BigA [Salmonella enterica subsp. enterica serovar Saintpaul str.
            SARA23]
 gi|197244151|gb|EDY26771.1| BigA [Salmonella enterica subsp. enterica serovar Saintpaul str.
            SARA23]
          Length = 1976

 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/405 (7%), Positives = 94/405 (23%), Gaps = 4/405 (0%)

Query: 41   TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
             ++  S   +   T  + +  + D  +    + +    +  +       +  +   ++  
Sbjct: 1164 AISGESITVLDSGTLTNNDSGVIDSDITVSGNLVNDGVINGTLTQNGGDIVNNGTIDSRS 1223

Query: 101  THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
                  L +  +    + ++     + I N         T A+    +  +   +     
Sbjct: 1224 LTTNGVLTNGTDGTMTSGAKVTGANSAIINDGTFYLGSATDAKNASMLEINDFAQFFNTG 1283

Query: 161  SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
            + +         +N        +          +  +    +    I+    N     + 
Sbjct: 1284 TLILDNNKNAIHLNANNGTLYNTGTMELTATSNKGAINYWGAGATFINDGTVNATTAALA 1343

Query: 221  TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
             + G            + + N        N   +D    ++          I        
Sbjct: 1344 YAGGGAGNAPDKHAFFWNQSNGVINYDADNGRAVDFSAYNNYVAVNDGTMNISGNNAYGM 1403

Query: 281  SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                  Q   +    +     ++   +A   +               N            
Sbjct: 1404 YGGKNAQLVNNNTINLGTEGTTDTGMVAMALDKNATANAVIENNGTINIYANNSYAFSVA 1463

Query: 341  NPQYRSNPSFLRDGGSVSKKFL---WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
               +  N   +     V+   +    +  N+ G      +  ++   ++          +
Sbjct: 1464 GAGHVVNNGTVVIADGVTGSGIIKQGDSVNVEGTNGNNGNSDEAHYADYTLPETPVEPGS 1523

Query: 398  VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGV 442
             T   +A         N +    +   +      +  S ++  GV
Sbjct: 1524 NTTSGFAAGDTSGASNNLNGY-VVGTNADGSAGQLKVSNASMEGV 1567


>gi|158337649|ref|YP_001518824.1| VCBS [Acaryochloris marina MBIC11017]
 gi|158307890|gb|ABW29507.1| VCBS [Acaryochloris marina MBIC11017]
          Length = 2531

 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 43/406 (10%), Positives = 84/406 (20%), Gaps = 8/406 (1%)

Query: 37  VRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
             +    + +       T      +      ++     G    + S E    +       
Sbjct: 538 KVQSAQVSSTGTGANAATITINGTSGGGSSDNSGVRIEGTTGRVTSVEGDILITGQGGAG 597

Query: 97  NNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEI 156
            NSP   I     +      N +   +  T    +   V+  +TS    Q    D    I
Sbjct: 598 GNSPGVQILNGEVASTGTGANAANITIIGTGSSGSNPGVEIDSTSGVSGQISTVDGRVTI 657

Query: 157 ELEISNLRRFLSELTVVNDAIKFK-------TASKHDAHDFLDQRDVLLQKISEIIGIST 209
               +        L      I          T       D +D +  ++   S    I+ 
Sbjct: 658 NGTGTTGNADGVRLRNDAVGIVATGSGAIDITGVGAGNGDGIDVQGGIVGGASASGAITL 717

Query: 210 IVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK 269
                N           L            +     T   +   +  +    +  +    
Sbjct: 718 TTDGINIQGGSIQSSGALVIQQVTASESIGIGGGAGTLNIDAAELSRLTDGFSSITFGAS 777

Query: 270 GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                +       +        +         S+       +    G             
Sbjct: 778 NSTGTVTLGSGFTLNDPTTITGDATNGYTLQGSDTATTFTVTGTEAGSITNG-GITFSGN 836

Query: 330 LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389
                +    +     SN    ++  +       N    AG            N    F 
Sbjct: 837 SSLAFNNATTLQGGAGSNTIVGQNTANTWAINGNNAGTYAGISFGNIENITGGNSTDNFV 896

Query: 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
              G   + TL   A N+   L    S+       +      +  S
Sbjct: 897 FSNGATISGTLDGGAGNNTLDLSAYTSNLTFNLNSAGGNIASVVGS 942


>gi|115523168|ref|YP_780079.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris
           BisA53]
 gi|115517115|gb|ABJ05099.1| flagellar basal body rod protein [Rhodopseudomonas palustris
           BisA53]
          Length = 243

 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/201 (5%), Positives = 46/201 (22%), Gaps = 2/201 (0%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    + +   +  ++  +I  N+ N     +         +       ++       
Sbjct: 1   MQSALYVSLSAQVSLEKRLETIANNMANMKTAAFRADAVKFETAMS--NAASKPVAFSTP 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
            D  +   + ++ Q         +          N +      +++ +     + ++   
Sbjct: 59  GDNFISRKAGSVTQTGNNLDVAVVGNAWIGFTGPNGAVYTRDGRMQINANGELQTVTGYP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
           +                        I    ++   L + ++          N  +    A
Sbjct: 119 VLDAGGTPILVDPDAGPLIIARNGIISQGTNQVGVLGLFDIPADAKLERFGNSGVVPDRA 178

Query: 183 SKHDAHDFLDQRDVLLQKISE 203
           +                + S 
Sbjct: 179 ATAVVDFVGAGFQQGFVEGSN 199


>gi|221111468|ref|XP_002167106.1| PREDICTED: similar to CG10911 CG10911-PA [Hydra magnipapillata]
          Length = 2077

 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/396 (7%), Positives = 104/396 (26%), Gaps = 16/396 (4%)

Query: 26  RNIENADNK-NYVRRDTMTTISPENVTVVTQRSE---------NKNMFDKVLHAHSSAIG 75
           +NI N+ +  +          SP + +V                 +     ++  +  + 
Sbjct: 488 QNIANSSSPISLNESTQNIANSPSSKSVNNSTQIVVNSSSSNFANSSSTNSVNDSTQIVV 547

Query: 76  QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVV 135
                 S     +++      ++        +  S      N ++ ++  +  D+     
Sbjct: 548 NSSSTDSVNKSTQIVVNSSPTDSVNNSTQIVVNSSSTDSVNNSTQIVVNSSPTDSVNNSS 607

Query: 136 QNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRD 195
            N    + ++    +  +   +     +    ++    +  I   ++S    +       
Sbjct: 608 TNSVNDSTQIVVNSSSTNSVNDSTQIVVNSSSTDSVNKSTQIVVNSSSTDSVNKSTQIVV 667

Query: 196 VLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV----PRDINFEKMNSYTVTSESNP 251
                 S       +V ++    V  S   ++ ++              NS T +   + 
Sbjct: 668 NSSPTNSVNNSTQIVVNSSPTDSVNNSSTNSVNDSTQIVVNSSPTDSVNNSSTNSVNDST 727

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
             +     + +  ++       +   + +S      N     +               + 
Sbjct: 728 QIVVNSSPTDSVNNSSTNSVNDSTQIVVNSSPTDSVNNSSTNSVNDSTQIVVNSSPTDSV 787

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
            N   + I     D  N        +      + ++ + +   G  +     + + +A  
Sbjct: 788 NNSTQIVINSSPTDSVNNSTHIAVNSSS--TDFVNDFTQIIVIGFSTDSVNDSTQIIAND 845

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                    S N       ++  ++   ++    ++
Sbjct: 846 STQNIANSSSSNFVNSSSSISVNDSTHNIVNSFSST 881


>gi|166032966|ref|ZP_02235795.1| hypothetical protein DORFOR_02687 [Dorea formicigenerans ATCC
           27755]
 gi|166027323|gb|EDR46080.1| hypothetical protein DORFOR_02687 [Dorea formicigenerans ATCC
           27755]
          Length = 747

 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 95/406 (23%), Gaps = 29/406 (7%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R      F K  +  +    +             ++  ++        + ++     +  
Sbjct: 247 RHFYNRFFQKKRYKDAYRAARAGKSAGSLGGATTITGVENMTVKAKIALKEIIKRNRAMF 306

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             +    L   VI  +          A  V  I      + ++  +   R+ +  + +N 
Sbjct: 307 AGIGIFALLFLVIAVSLGSCSASIEGAGSVIGITTYPSSDEDIYAAE-NRYAALESALNQ 365

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        +  ++      +      +I   T    +       ++  +LFE      
Sbjct: 366 QINEMERRHPNYDEYQYNIAEIGHNPYHLISYLTAKYGDWTYSDVENELQSLFEAQYHLN 425

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSAVPKGKIKALLQIRDSVVPIFQ 287
              +  + T T         G VV+S            +       A      ++     
Sbjct: 426 TEGRTETVTETRNVRVGESLGQVVTSGYCNCRICCGVWSGGPTASGAYPTANHTIAVDAS 485

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N    +   ++ +  E       +    G+       +       G             +
Sbjct: 486 NPFVPIGTKVVMNGVEYTVEDTGAFARYGVQFDVYYDNHAAASAHGHQTWEAYIADDNGS 545

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   S  K     + N +    +     ++                  L +     
Sbjct: 546 QEVTVTSTSTKKILYVTLTNGSFDA-VARANLNAEQLIIYNALNTTYGNRNYLWD----- 599

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              +    S S    M  ++    +             EE + +I+
Sbjct: 600 ---VNNVTSGSGGNGMSYEIPPEALQ-----------DEEFARMIR 631


>gi|118345491|ref|XP_976576.1| hypothetical protein TTHERM_01013170 [Tetrahymena thermophila]
 gi|89287993|gb|EAR85981.1| hypothetical protein TTHERM_01013170 [Tetrahymena thermophila SB210]
          Length = 1063

 Score = 37.3 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 81/327 (24%), Gaps = 13/327 (3%)

Query: 122  ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                + +  A+ +    NT        R   D++     S                + + 
Sbjct: 746  PANDSTLLGAKPMTNTLNTQTNYGTPQRLITDEKSGFNNSPQNPTAIIKNNNLQTREQEL 805

Query: 182  ASKHDAHDFLDQRDVLLQKISEIIGIS-TIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
             + ++++D  D     +   +     S    ++N  +    S+  T       +      
Sbjct: 806  VNLNNSNDSDDYNQKSITIKNNNNNSSLAFNQSNFRINTAASNQQTPIIASQNNKVTPTT 865

Query: 241  NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
               T     N            QG+     +I +  Q+   +   +++    +       
Sbjct: 866  IQLTNLQNINYSSSGNNYQRQPQGNQFNNQRINSQSQLNGPMFNQYRDNTAPIMNQPRIP 925

Query: 301  FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKK 360
                  I             + + +        +       P + +N     D       
Sbjct: 926  SQSNMFIGNTQPISSIPSQTNFLYNGQRPTQPSMQNIRQSYPMFTNNQQNDGDDEDDDYG 985

Query: 361  FLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHD 420
               N                + N+  + +                +S       +S++  
Sbjct: 986  LGANPYATVDINKNTQQRQPNRNEMRLLNAS------------YASSGIRGATGQSNASK 1033

Query: 421  LHMKSQVVFNHISESYSNTVGVNLQEE 447
            +   S+  F+   +   N + V+  EE
Sbjct: 1034 VSKVSKASFDPFVQFQQNQINVDSDEE 1060


>gi|293605000|ref|ZP_06687396.1| flagellar basal-body rod protein FlgB [Achromobacter piechaudii
          ATCC 43553]
 gi|292816605|gb|EFF75690.1| flagellar basal-body rod protein FlgB [Achromobacter piechaudii
          ATCC 43553]
          Length = 135

 Score = 37.3 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                Q    +  NI NAD  NY  RD     + +N    ++R  + ++      
Sbjct: 17 GLRAQRQ--EVLSSNIANADTPNYKARDFDFKTAMQNAMEDSKRLADTSLTLTSAR 70


>gi|254496888|ref|ZP_05109736.1| flagellar basal body rod protein FlgF [Legionella drancourtii
           LLAP12]
 gi|254353907|gb|EET12594.1| flagellar basal body rod protein FlgF [Legionella drancourtii
           LLAP12]
          Length = 247

 Score = 37.3 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/217 (8%), Positives = 47/217 (21%), Gaps = 5/217 (2%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDK 65
           +   A         +   I  N+ NA    + R D     +       +  S N  +   
Sbjct: 4   ILYNAAGGGRANFSRQEIIANNLANAATPGF-RTDLYQAQTMYAQAAGSNSSGNSFVVQN 62

Query: 66  VLHAHSSAIGQQRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 S        ++ +        ++  D            L           S   
Sbjct: 63  TNSFDLSGGDLITTGRNLDIAINGNGWLAVRDSTGKEAYTKTGSLHVDANGQLVTASGKA 122

Query: 123 LGKTVIDNAEEVVQNFN-TSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
           +       +    Q+ +  +   +  +      +    +  ++        +        
Sbjct: 123 VIGNGGPISIPPAQSIDIGTDGTISIVPLGDTAQSPAVVDRVKMVSLPKDNIVKNADGLF 182

Query: 182 ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
             K       D    L+    E   +  + +    + 
Sbjct: 183 QLKTGGVAPFDSNIRLISGALEGSNVQPVEQMVAMIT 219


>gi|228984827|ref|ZP_04144999.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228775025|gb|EEM23419.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 135

 Score = 37.3 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|94495414|ref|ZP_01301994.1| flagellar proximal rod protein [Sphingomonas sp. SKA58]
 gi|94424802|gb|EAT09823.1| flagellar proximal rod protein [Sphingomonas sp. SKA58]
          Length = 123

 Score = 37.3 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTIS 46
          SQ+ + +  NI NA    Y  RD     +
Sbjct: 19 SQRLSLLASNIANASTPGYKARDIDFEAA 47


>gi|307546971|ref|YP_003899450.1| flagellar basal body rod protein FlgB [Halomonas elongata DSM
          2581]
 gi|307218995|emb|CBV44265.1| flagellar basal body rod protein FlgB [Halomonas elongata DSM
          2581]
          Length = 137

 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%)

Query: 17 ASQQFA-------SIVRNIENADNKNYVRRDTMTTIS 46
            Q  +        +  NI NAD   Y  RD   + +
Sbjct: 12 QQQALSLRHERQQVLASNIANADTPGYKARDMDFSSA 48


>gi|300697144|ref|YP_003747805.1| adhesin/hemolysin [Ralstonia solanacearum CFBP2957]
 gi|299073868|emb|CBJ53396.1| putative adhesin/hemolysin [Ralstonia solanacearum CFBP2957]
          Length = 3651

 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 39/450 (8%), Positives = 96/450 (21%), Gaps = 30/450 (6%)

Query: 12  NICNNASQQFASIVRNIENADNKNYV-------------RRDTMTTISPENVTVVTQRSE 58
           +    A Q       N+ ++                         T+S     V    + 
Sbjct: 372 SGTLAAQQDLRVNANNVASSGTLGAGVNSDGSLAHAGDLSVVAGGTLSATGQNVAGGNAT 431

Query: 59  NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL-----ES 113
            +     +  + +SA G   L      L    +          +    L +       + 
Sbjct: 432 LQGASVNLAGSQTSANGNLNLNAQAGKLDLTGATTSAGGALSANAQGALINDRGHLSSQG 491

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVV 173
            +   +  +  +     ++  +      A   Q     A   +     +L      +  +
Sbjct: 492 AATVSAGSLSNQGGQIVSQNALSANVAGALSNQGGTLQAAGALNASAGSLDNTAGHIASL 551

Query: 174 NDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV-- 231
           N      T +    +              +   ++     +    +  S   TL      
Sbjct: 552 NTDGLNLTTAGQLTNGQGGTIGGNGNVAVQAGQLNNTGTISAVQNLGVSTAQTLANAGTL 611

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALL---QIRDSVVPIFQN 288
             + N       T+T+    I        +        G +            V      
Sbjct: 612 AANGNTTVSAGTTLTNAGGTIAAGQRANVTAATLDNSAGTLTGNQLALAAATLVNRGGTI 671

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                  + IG     D   G                +++      S T  ++    S  
Sbjct: 672 TQTGTGPIAIGVSGTLDNTGGAIRTNSADLTLAPATLINDHGTITDSGTGTLSVTTGSLS 731

Query: 349 SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL------- 401
           +      +     +           L      + N   + +   G     ++        
Sbjct: 732 NNGGTIATNGALDVQAGAVSNQGGKLSAQSQATLNVASLDNSAGGFVGAQSVGITDQGGL 791

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
           + A  ++         +  +      + N 
Sbjct: 792 DNAGGTVAASGALTVSAGSIANAGGAIKNA 821


>gi|317133491|ref|YP_004092805.1| flagellar basal-body rod protein FlgC [Ethanoligenens harbinense
          YUAN-3]
 gi|315471470|gb|ADU28074.1| flagellar basal-body rod protein FlgC [Ethanoligenens harbinense
          YUAN-3]
          Length = 143

 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 22/81 (27%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTT------------- 44
          L   N   +       +   I  N+ N D         Y R+    +             
Sbjct: 3  LNALNIPGSGLTAQRLRMDVISENLANQDTTETADGGPYQRKTVSFSERTQPTFDGYLAG 62

Query: 45 ---ISPENVTVVTQRSENKNM 62
               P  V V    +++ + 
Sbjct: 63 ATGEGPGGVQVDAIETDSSDF 83


>gi|16901492|gb|AAL30164.1|AF345847_1 flagellin [Escherichia coli]
          Length = 498

 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 46/488 (9%), Positives = 134/488 (27%), Gaps = 23/488 (4%)

Query: 2   SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
           SL +   +  +     S +  +  + I N             T + + +T  ++ + +  
Sbjct: 24  SLSSAIERLSSGLRINSAKDDAAGQAIAN-----------RFTANIKGLTQASRNANDGI 72

Query: 62  MFDKVLHAH-SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              +      +      + ++         +  D    S    I +    ++  S     
Sbjct: 73  SVAQTTEGALNEINNNLQRIRELSVQATNGTNSDSDLTSIQSEIQQRLSEIDRVSGQTQF 132

Query: 121 DILGKTVIDNAEEV---VQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI 177
           + +     D    +     +  T   ++Q+I +D        I +  +  +         
Sbjct: 133 NGVKVLASDQDMTIQVGANDGETITIKLQEINSDTLGLSGFGIKDPTKLKAATAETTYFG 192

Query: 178 KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINF 237
                +  +  D      V           + +   N  + V  +      E    ++  
Sbjct: 193 STVKLADANTLDADITATVKGTTTPGQRDGNIMSDANGKLYVKVAGSDKPAENGYYEVTV 252

Query: 238 EKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVL 297
           E   +     +     + G    +     V   K K  + ++        +        L
Sbjct: 253 EDDPTSPDAGKLKLGALAGTQPQAGNLKEVTTVKGKGAIDVQLGTDTATASITGAKLFKL 312

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
             +  +         +    + A+  +       + +S T     ++ +    L      
Sbjct: 313 EDANGKDTGSFALIGDDGKQYAANVDQKTGAVSVKTMSYTDADGVKHDNVKVELGGSDGK 372

Query: 358 SKKFLWNVKNLAGYPDLI-----NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLE 412
           ++             DL           + +     DP+A I+  ++ ++   +    L 
Sbjct: 373 TEVVTATDGKTYSVSDLQGKSLKTDSIAAISTQKTEDPLAAIDKALSQVD---SLRSNLG 429

Query: 413 KNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             ++             N++S + S     +   E+S + + +        ++   ++  
Sbjct: 430 AIQNRFDSAITNLGNTVNNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQTT 489

Query: 473 QTLLEGVK 480
           Q +L  ++
Sbjct: 490 QNVLSLLQ 497


>gi|304397202|ref|ZP_07379081.1| flagellar basal-body rod protein FlgC [Pantoea sp. aB]
 gi|304355351|gb|EFM19719.1| flagellar basal-body rod protein FlgC [Pantoea sp. aB]
          Length = 134

 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPENVTVVT 54
          M+LL +F+ A +     SQ+      N+ NAD+        YV +  +        +   
Sbjct: 1  MALLNIFDIAGSAMTAQSQRLNVSASNLANADSVTGPDGKPYVAKQVVFQTDAAPGSATG 60


>gi|58532899|ref|YP_195122.1| Hypothetical-Protein | belonging to T4-LIKE GC: 830 [Synechococcus
            phage S-PM2]
 gi|58331366|emb|CAF34152.1| Hypothetical-Protein | belonging to T4-LIKE GC: 830 [Synechococcus
            phage S-PM2]
          Length = 3338

 Score = 37.3 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 45/452 (9%), Positives = 107/452 (23%), Gaps = 29/452 (6%)

Query: 3    LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
            L   +N + +  +  + + A+   N            D   +     V   T+ +    +
Sbjct: 2491 LSGTYNISVSGSSGNTLRLATTTTN---------PTSDPAPSSYVGGVIADTRNNSANAL 2541

Query: 63   FDK--------VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
             D         +  + S A G       F     M        ++     +K+  SL  Y
Sbjct: 2542 NDGGNTNIVLSIRTSGSGATGSGVRQLGFTDNDNMWIRGSGGGSTSFGTWAKVWTSLNDY 2601

Query: 115  SKNLSEDILGKTVIDNAEEVVQNFNTS------AREVQKIRADADKEIELEISNLRRFLS 168
            +    E      + D  +E  QN           R++    +       + IS+      
Sbjct: 2602 TAGNGEGPNALRLGDQVKEWYQNAFNLRTGEVGDRQLPDYMSQKVFNTSISISSYNLLPR 2661

Query: 169  ELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLF 228
                    +             L   +        I     +   N+    Y+       
Sbjct: 2662 YKFYFAGQLLTSATFAPGTTVNLYNSNSQGIGTLLITNNQIVSDPNDSTNNYSILTGNFN 2721

Query: 229  ETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQN 288
                 +       +    + SN     G      +  +       +L +  +        
Sbjct: 2722 AAGNIESVVTIGTAQETANVSNFSLDSGGTFEVAKLESAAGTARLSLGRKDNQSTSPSIY 2781

Query: 289  QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
                +        +        +E+   + I     D        +     +      N 
Sbjct: 2782 FNSGLTSTSTYDSAIIASGGNGTESGGSIDIRVLDPDAFTINGSLVWNAGNITFDPGFNG 2841

Query: 349  SFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS- 407
            S   + G+     + +        ++      + ++N +       + ++TL     N  
Sbjct: 2842 SNNYNTGADGLAVIRDDDGNFAANNITADITGAASENVLKTGDTM-SGSLTLSGTGSNLS 2900

Query: 408  ----IGWLEKNRSDSHDLHMKSQVVFNHISES 435
                +G         +       +  N  +  
Sbjct: 2901 VGGTLGVTGNATLSGNLNVDSGTLFVNSTTNR 2932


>gi|222100201|ref|YP_002534769.1| Flagellar basal-body rod protein FlgB [Thermotoga neapolitana DSM
          4359]
 gi|221572591|gb|ACM23403.1| Flagellar basal-body rod protein FlgB [Thermotoga neapolitana DSM
          4359]
          Length = 137

 Score = 37.3 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 5/19 (26%), Positives = 6/19 (31%)

Query: 27 NIENADNKNYVRRDTMTTI 45
          NI N     Y R+      
Sbjct: 36 NIANVSTPGYKRKYVAFEE 54


>gi|218281859|ref|ZP_03488198.1| hypothetical protein EUBIFOR_00766 [Eubacterium biforme DSM 3989]
 gi|218217148|gb|EEC90686.1| hypothetical protein EUBIFOR_00766 [Eubacterium biforme DSM 3989]
          Length = 747

 Score = 37.3 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 94/406 (23%), Gaps = 29/406 (7%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R      F K  +  +    +             ++  ++        + ++     +  
Sbjct: 247 RHFYNRFFQKKRYKDAYRAARAGKSAGSLGGATTIAGVENMTVKAKIALKEIIKRNRAMF 306

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             +    L   VI  +          A  V  I      + ++  +   R+ +  + +N 
Sbjct: 307 AGIGIFALLFLVIAVSLGSCSASIEGAGSVIGITTYPSSDEDIYAAE-NRYATLESALNQ 365

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        +  ++      +      +I   T    +       ++   LFE      
Sbjct: 366 QINEMERRHPNYDEYQYNIAEIGHNPYHLISYLTAKYGDWTYADVENELQALFEAQYHLN 425

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSAVPKGKIKALLQIRDSVVPIFQ 287
              +  + T T         G VV+S            +       A      ++     
Sbjct: 426 TEGRTETVTETRNVRVGESLGQVVTSGYCNCRICCGVWSGGPTASGAYPTANHTIAVDAS 485

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N    +   ++ +  E       +    G+       +       G             +
Sbjct: 486 NPFVPIGTKVVMNGVEYTVEDTGAFARYGVQFDVYYDNHAAASAHGHQTWEAYIADDNGS 545

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   S  K     + N +    +     ++                  L +     
Sbjct: 546 QEVTVTSTSTKKILYVTLTNGSFDA-VARANLNAEQLIIYNALNTTYGNRNYLWD----- 599

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              +    S S    M  ++    +             EE + +I+
Sbjct: 600 ---VNNVTSGSGGNGMSYEIPPEALQ-----------DEEFARMIR 631


>gi|257866396|ref|ZP_05646049.1| flagellar hook-basal body complex protein [Enterococcus
           casseliflavus EC30]
 gi|257873088|ref|ZP_05652741.1| flagellar hook-basal body complex protein [Enterococcus
           casseliflavus EC10]
 gi|257800354|gb|EEV29382.1| flagellar hook-basal body complex protein [Enterococcus
           casseliflavus EC30]
 gi|257807252|gb|EEV36074.1| flagellar hook-basal body complex protein [Enterococcus
           casseliflavus EC10]
          Length = 233

 Score = 37.3 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/194 (8%), Positives = 52/194 (26%), Gaps = 5/194 (2%)

Query: 289 QLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNP 348
           Q   + +  +   +  +   G + +         +            +         S+ 
Sbjct: 35  QAKTLFQSALDEVALHNYQGGPNADTRRDIGGLSLGTQLAGSTISQDQGAVKQTGQASDF 94

Query: 349 SFLRDGG---SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405
           + L +G      +       +N     +  N Y        +      ++         +
Sbjct: 95  ALLSEGYFVVQNNAGQRLYTRNGDFTVNQQNQYVTQEGYLVLGANGQAVSALGPANFLIQ 154

Query: 406 NSIGWLEKNRSDSHDLHMKSQVVFNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNK 463
                       ++     +    N   I +       V + +E+  +I+  + +  + K
Sbjct: 155 TFPPEALTTAGQNYVTSNAAGTTVNAPVIQQGALEQANVAVADEMVAMIQTSREFEANQK 214

Query: 464 LIMFTDKMLQTLLE 477
            +  T++ LQ  + 
Sbjct: 215 ALSSTNQTLQKAVN 228


>gi|256830992|ref|YP_003159720.1| hypothetical protein Dbac_3229 [Desulfomicrobium baculatum DSM
          4028]
 gi|256580168|gb|ACU91304.1| protein of unknown function DUF1078 domain protein
          [Desulfomicrobium baculatum DSM 4028]
          Length = 123

 Score = 37.3 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 5/48 (10%)

Query: 10 AQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI--SPENVTVVTQ 55
          A    + + Q       N+ N +   +           + + V V   
Sbjct: 7  AMQGISFSQQ---VAANNVANMNTNGFHSSRVEFETGLNGQGVQVQDV 51


>gi|168185307|ref|ZP_02619971.1| flagellar basal-body rod protein FlgB [Clostridium botulinum Bf]
 gi|182671644|gb|EDT83605.1| flagellar basal-body rod protein FlgB [Clostridium botulinum Bf]
          Length = 69

 Score = 37.3 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVR 38
            N +S +   I  NI N +  +Y  
Sbjct: 19 SMNASSYRGKVISNNIANYNTPDYKS 44


>gi|89072317|ref|ZP_01158896.1| flagellar basal body rod protein [Photobacterium sp. SKA34]
 gi|89051849|gb|EAR57301.1| flagellar basal body rod protein [Photobacterium sp. SKA34]
          Length = 144

 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTISPENVTVVT 54
           M+   +++ A +  N  + +  ++  N+ NAD      +  Y     +         +  
Sbjct: 1   MAFTDIYSIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYKALKPVFATVYNKTQLTG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
           ++++  +   +++     A   ++  +    L        + +      ++ +  +  S+
Sbjct: 61  EQADYPSAEVRIMDVVQHAGDAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|317047689|ref|YP_004115337.1| flagellar basal-body rod protein FlgC [Pantoea sp. At-9b]
 gi|316949306|gb|ADU68781.1| flagellar basal-body rod protein FlgC [Pantoea sp. At-9b]
          Length = 134

 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI------SPE 48
          M+LL +F+ A +     SQ+      N+ NAD+        YV +  +         +  
Sbjct: 1  MALLNIFDIAGSAMTAQSQRLNVSASNLANADSVTGPDGQPYVAKQVVFQTDAAPGMATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVAGV 67


>gi|228926779|ref|ZP_04089847.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228832892|gb|EEM78461.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 138

 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|58039961|ref|YP_191925.1| flagellar basal body rod protein FlgC [Gluconobacter oxydans
          621H]
 gi|58002375|gb|AAW61269.1| Flagellar basal-body rod protein FlgC [Gluconobacter oxydans
          621H]
          Length = 135

 Score = 37.3 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 10/74 (13%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTISP---ENV 50
          M+L      + +  +  +Q+   +  N+ N D          Y R+              
Sbjct: 1  MNLSTTIGISASGMDAQAQRLRIVAENLANQDTTGSQPGADPYRRKTITFAEHVDDETGA 60

Query: 51 TVVTQRSENKNMFD 64
          + V  ++  ++M D
Sbjct: 61 STVDVQNVGQDMSD 74


>gi|291522950|emb|CBK81243.1| Cell wall-associated hydrolases (invasion-associated proteins)
           [Coprococcus catus GD/7]
          Length = 747

 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 95/406 (23%), Gaps = 29/406 (7%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R      F K  +  +    +             ++  ++        + ++     +  
Sbjct: 247 RHFYNRFFQKKRYKDAYRAARAGKSAGSLGGATTITGVENMTVKAKIALKEIIKRNRAMF 306

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             +    L   VI  +          A  V  I      + ++  +   R+ +  + +N 
Sbjct: 307 AGIGIFALLFLVIAVSLGSCSASIEGAGSVIGITTYPSSDEDIYAAE-NRYAALESALNQ 365

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        +  ++      +      +I   T    +       ++  +LFE      
Sbjct: 366 QINEMERRHPNYDEYQYNIAEIGHNPYHLISYLTAKYGDWTYSDVENELQSLFEAQYHLN 425

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSAVPKGKIKALLQIRDSVVPIFQ 287
              +  + T T         G VV+S            +       A      ++     
Sbjct: 426 TEGRTETVTETRNVRVGESLGQVVTSGYCNCRICCGVWSGGPTASGAYPTANHTIAVDAS 485

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N    +   ++ +  E       +    G+       +       G             +
Sbjct: 486 NPFVPIGTKVVMNGVEYTVEDTGAFARYGVQFDVYYDNHAAASAHGHQTWEAYIADDNGS 545

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   S  K     + N +    +     ++                  L +     
Sbjct: 546 QEVTVTSTSTKKILYVTLTNGSFDA-VARANLNAEQLIIYNALNTTYGNRNYLWD----- 599

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              +    S S    M  ++    +             EE + +I+
Sbjct: 600 ---VNNVTSGSGGNGMSYEIPPEALQ-----------DEEFARMIR 631


>gi|290972692|ref|XP_002669085.1| predicted protein [Naegleria gruberi]
 gi|284082627|gb|EFC36341.1| predicted protein [Naegleria gruberi]
          Length = 2641

 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 76/256 (29%), Gaps = 10/256 (3%)

Query: 195  DVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
              ++   S +I  +T+  +        ++ +++  T     N    NS  +++ +  +  
Sbjct: 1081 QTIINSNSSMIKNNTVYNSTVLNNSTLNNYSSIVNTTQVSNNITVGNSSNLSNTTIVLNN 1140

Query: 255  DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
              +  +S+Q  +         +   DS+    Q+  +                + ++ N 
Sbjct: 1141 SSMESNSSQTISNSTVANTTNIHGNDSLSNTTQSVSNNNTLGNSTQLLNISMNSNSTSNY 1200

Query: 315  PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
              +  +    +         S     N  +  N S +    + +         +      
Sbjct: 1201 SSITNSTNYGNESFVNSTNNSVNSTTNSTFMGNSSNISQQVNTTTNSSI---GVVDNETT 1257

Query: 375  INHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISE 434
            I     + + N I +    ++ +  + E +  S    +   + S  +   +  + N    
Sbjct: 1258 ILMNETNVSNNSIVETNQTLDNSQIVNETSTESNNNGKIQNNSSQTIVSNNSSIVN---- 1313

Query: 435  SYSNTVGVNLQEELSF 450
                T   +   EL  
Sbjct: 1314 ---ETSNTSNTTELIS 1326


>gi|91978367|ref|YP_571026.1| chemotaxis sensory transducer [Rhodopseudomonas palustris BisB5]
 gi|91684823|gb|ABE41125.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB5]
          Length = 566

 Score = 37.3 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 51/178 (28%)

Query: 273 KALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQ 332
            A+  +    +      L +  + L     + D    +  +  G          DN +  
Sbjct: 208 GAIAWVIGRSITRPLAMLGDRMQSLAEGQLDADIPGTDRGDEVGAMAKSVQVFKDNAIRI 267

Query: 333 GISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA 392
              E I    Q R+     R    ++  F  +V  + G          S  ++       
Sbjct: 268 RGLEQIEAETQQRAAEERRRTMLEIAGDFERSVSGIVGSVATAARNMQSTAQSMTATASD 327

Query: 393 GINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450
                 T+   ++++   +    + + +L      +   +++S        +  E + 
Sbjct: 328 ASARAATVGSASQSTSTTIGTVAAAAEELSSSVGEIARQVAQSREVASKAVIDAEQTN 385


>gi|332981428|ref|YP_004462869.1| flagellar basal-body rod protein FlgB [Mahella australiensis 50-1
          BON]
 gi|332699106|gb|AEE96047.1| flagellar basal-body rod protein FlgB [Mahella australiensis 50-1
          BON]
          Length = 137

 Score = 37.3 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 4/29 (13%), Positives = 7/29 (24%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTISPENV 50
            I  N+ N D   +           +  
Sbjct: 26 QVISDNVANVDTPGFKASKVAFEDVLKGA 54


>gi|229121295|ref|ZP_04250526.1| Flagellar basal-body rod protein [Bacillus cereus 95/8201]
 gi|228662140|gb|EEL17749.1| Flagellar basal-body rod protein [Bacillus cereus 95/8201]
          Length = 135

 Score = 37.3 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|146307872|ref|YP_001188337.1| flagellar basal body rod protein FlgB [Pseudomonas mendocina ymp]
 gi|145576073|gb|ABP85605.1| flagellar basal-body rod protein FlgB [Pseudomonas mendocina ymp]
          Length = 135

 Score = 37.3 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD      
Sbjct: 1  MSINFGKALGIHEQALGFRAQRAEVLANNIANADTPNYKARDLDFASV 48


>gi|254383033|ref|ZP_04998388.1| hypothetical protein SSAG_02690 [Streptomyces sp. Mg1]
 gi|194341933|gb|EDX22899.1| hypothetical protein SSAG_02690 [Streptomyces sp. Mg1]
          Length = 3533

 Score = 37.3 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 34/387 (8%), Positives = 82/387 (21%), Gaps = 17/387 (4%)

Query: 86   LKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
            L   ++         +     +R      S +    +                       
Sbjct: 1756 LTSAVTVTAPTGEKTSSTFDAVRGQRRVASTDADGGVTTYAYDTGGFLHTVTDPNGHATT 1815

Query: 146  QKIRADADKEIELEISNLRRFLSELTVVNDAIK-FKTASKHDAHDFLDQRDVLLQKISEI 204
                   +        +     +                        D R          
Sbjct: 1816 TGHDERGNTVSTTTCRDANSCWTSFAEYYFNASDPLDPRNGKPTAIRDARSTGADDNRYR 1875

Query: 205  IGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQG 264
               S          +  +D  TL +       +       V                   
Sbjct: 1876 TATSYT-------ALGLTDTVTLADGRTASTTYTTGAEPAVGG-------GTTPAGLIAS 1921

Query: 265  SAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                 G   +     +  +         +          K      S+  P         
Sbjct: 1922 KKSTGGATASYAYFANGDLAKSTAPSGLVTTYAYDGIGRKLTETQVSDTTPDGVKTSYTY 1981

Query: 325  DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            +  +++       +       ++ + +        + L          D        +N 
Sbjct: 1982 NAMSRVSSETGPGVKNEITGVTHTAKISRTYDADGQLLAESTEDTTGGDATRTTTYRYNA 2041

Query: 385  NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNL 444
              + D V     N T   + R+++G + +    + ++   +      ++ES       N 
Sbjct: 2042 LGLNDSVTDAAGNET--TFGRDALGRVIRETDPAGNVVTHAFTKRGQLAESVLKDWRGNP 2099

Query: 445  QEELSFLIKVEQSYNISNKLIMFTDKM 471
              + S L+ V  +Y+ + +L   TD M
Sbjct: 2100 SGQTSDLVLVSHAYDPAGRLASTTDAM 2126


>gi|30059862|gb|AAP13303.1| FliC [Escherichia coli]
 gi|323961972|gb|EGB57571.1| flagellin [Escherichia coli H489]
          Length = 420

 Score = 37.3 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/404 (8%), Positives = 119/404 (29%), Gaps = 11/404 (2%)

Query: 52  VVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSL 111
                + + ++  +     + +     + +    L+   + DD    +  +  +     L
Sbjct: 2   AQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61

Query: 112 ESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELT 171
              ++N ++       I  A+      +     +Q++R +   +     ++     S   
Sbjct: 62  TQAARNAND------GISVAQTTEGALSEINNNLQRVR-ELTVQATTGTNSESDLSSIQD 114

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +   ++                     K++  +G +       D+    S    L    
Sbjct: 115 EIKSRLEEIDRVSSQTQFNGVNVLAKDGKMNIQVGANDGQTITIDLKKIDSSTLNLSSFD 174

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLD 291
             ++     +  T+  +      D    +S     +   +      + D+    + +   
Sbjct: 175 ATNLGTSVKDGATINKQVAVGAGDFKDKASGSLGTLKLVEKDGKYYVNDTKSSKYYDAEV 234

Query: 292 EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFL 351
           + ++  I  F+  +           +        LD    +     +    +  ++   +
Sbjct: 235 DTSKGKIN-FNSTNESGTTPTAATEVTTVGRDVKLDASALKANQSLVVYKDKSGNDAYII 293

Query: 352 RDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411
           +     + +  +N  N++    L      +   N   +P+  ++  +  ++  R+S+G +
Sbjct: 294 QTKDVTTNQSTFNAANISDAGVLSIGASTTAPSNLTANPLKALDDAIASVDKFRSSLGAV 353

Query: 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVE 455
           +     +      +    +       +    +   E+S + K +
Sbjct: 354 QNRLDSAIANLNNTTTNLSEAQSRIQDA---DYATEVSNMSKAQ 394


>gi|146281768|ref|YP_001171921.1| flagellar basal body rod protein FlgB [Pseudomonas stutzeri
          A1501]
 gi|145569973|gb|ABP79079.1| flagellar basal-body rod protein FlgB [Pseudomonas stutzeri
          A1501]
          Length = 134

 Score = 37.3 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      SQ+   +  NI NAD  NY  RD      
Sbjct: 1  MSISFDKALGIHEKALGFRSQRAEVLANNIANADTPNYKARDLDFGSV 48


>gi|192362305|ref|YP_001982402.1| flagellar basal body rod protein FlgC [Cellvibrio japonicus
          Ueda107]
 gi|190688470|gb|ACE86148.1| flagellar basal-body rod protein FlgC [Cellvibrio japonicus
          Ueda107]
          Length = 148

 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 11/96 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
          M+L  +F+ A    N  S +  +   N+ NA            + S     V   R    
Sbjct: 1  MALGTIFDIAGTGMNAQSLRLNTTASNLANA-----------QSASSSVDEVYRSRQPVF 49

Query: 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHY 96
              +    + +  G  +      A  +++   +  
Sbjct: 50 AAIAQQAMGNLNGAGYSQNELDANAGVQVLGIVESD 85


>gi|33601286|ref|NP_888846.1| putative outer membrane ligand binding protein [Bordetella
            bronchiseptica RB50]
 gi|12484040|gb|AAG53941.1|AF304006_1 putative outer membrane ligand binding protein BipA [Bordetella
            bronchiseptica]
 gi|33575722|emb|CAE32799.1| putative outer membrane ligand binding protein [Bordetella
            bronchiseptica RB50]
          Length = 1578

 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 37/408 (9%), Positives = 86/408 (21%), Gaps = 8/408 (1%)

Query: 28   IENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALK 87
            I N        R T+  ++     V        +   K + A           +   +  
Sbjct: 751  IANVATDAASGRVTVAGVAEPGANVAV---NFPDGTRKTVVAGGDGAYTATSDRDMVSGD 807

Query: 88   EMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQK 147
              + A D   N          D+++  +       +     D     +     +   V  
Sbjct: 808  IRVQAVDKAGNQSPETTRAYADAVDKTA--PEVPTIANVTTDAKSGRITVTGMAEPGVNV 865

Query: 148  IRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGI 207
                 D   +  +++     +  +  +       A   D               +  I  
Sbjct: 866  AVDFPDGTRKSVVADGAGAYTATSDRDMVSGDIHAQATDKAGNQSPEATRHYGDTTDITP 925

Query: 208  STIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
                  +N     TS   T         N                       +S++    
Sbjct: 926  PAAPTIDNVATDATSGRVTAAGVAEPGANVTVNFPDGTRKTVVAGGDGAYTATSDRDMVS 985

Query: 268  PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
               +++A  +  +   P       +              +A ++++             +
Sbjct: 986  GDIRVQATDKAGNQS-PEATRAYADAVDRTAPEVPTVTHVATDAKSGRITVTGMAEPGAN 1044

Query: 328  NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
              +         V        +   D   VS        + AG          +   +  
Sbjct: 1045 VTVNFPDGTRKTVVAGGDGAYAATSDRDMVSGDIRVQATDKAGNRSPEATRAYADTVDTT 1104

Query: 388  FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
               V  I    T  + +   I       S ++            +   
Sbjct: 1105 PPAVPTITDVTT--DASNGRITVTGVAESGANVTVDFPDGTRKTVVAG 1150


>gi|307592220|ref|YP_003899811.1| YD repeat-containing protein [Cyanothece sp. PCC 7822]
 gi|306985865|gb|ADN17745.1| YD repeat protein [Cyanothece sp. PCC 7822]
          Length = 11342

 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 39/416 (9%), Positives = 97/416 (23%), Gaps = 13/416 (3%)

Query: 15    NNASQQFASIVRNIE---NADN--KNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHA 69
             N   Q     V N+    NA N   ++  +      S  +  V+   S   N  D   + 
Sbjct: 10333 NATQQSLTVTVNNLAPLVNAGNDLTSFEGQSVSFNGSYTDPGVLDSHSIIWNFGDGNTNT 10392

Query: 70    HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
              S              +   +  ++      T  +S    +    S N    +   +   
Sbjct: 10393 GSLTPTHTYANNGTYTVTLTVIDNNGDMGQDTLTVSVFNLAPTLISVNAPTALNEGSSGS 10452

Query: 130   NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
              +       N +   +       D    +   N+    +        +    A       
Sbjct: 10453 FSATATDPGNDT---LSYSWNFGDSSAVIPGQNVNYTWANNGNYTVTVTVVDADGAATSQ 10509

Query: 190   FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
              L      +      +  +      + +V   S      +++    NF   N   +    
Sbjct: 10510 SLLVTVNNVAPTITSMTGNLTPSEGSTVVFNASATDAGNDSLTYSWNFGDGNEAVIGQTV 10569

Query: 250   NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
             + +F++   V     S            +  +V  +       + + +    +       
Sbjct: 10570 SHVFVEN-GVYIVTLSVKDSDNAVTTQSLEVNVSNVAPTVKAGIDQTVYQGQAVSFNGTY 10628

Query: 310   NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                 +                   ++ T   +       S        +      + N+ 
Sbjct: 10629 TDPGILDTHTFVWNFGDGTSNTNSLTPTYVYSNSGTYTVSLTVTDDEGASSVDQFLVNVK 10688

Query: 370   GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG-WLEKNRSDSHDLHMK 424
               P L     +        +  +     V+L E +  ++        + +      
Sbjct: 10689 PLPSLT---INDVTVVEGDNNTSTAIFTVSLSEASTQTVTVNFATQDATAKSSLDY 10741


>gi|153811723|ref|ZP_01964391.1| hypothetical protein RUMOBE_02116 [Ruminococcus obeum ATCC 29174]
 gi|149832126|gb|EDM87211.1| hypothetical protein RUMOBE_02116 [Ruminococcus obeum ATCC 29174]
          Length = 747

 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 95/406 (23%), Gaps = 29/406 (7%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R      F K  +  +    +             ++  ++        + ++     +  
Sbjct: 247 RHFYNRFFQKKRYKDAYRAARAGKSAGSLGGATTITGVENMTVKAKIALKEIIKRNRAMF 306

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             +    L   VI  +          A  V  I      + ++  +   R+ +  + +N 
Sbjct: 307 AGIGIFALLFLVIAVSLGSCSASIEGAGSVIGITTYPSSDEDIYAAE-NRYAALESALNQ 365

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        +  ++      +      +I   T    +       ++  +LFE      
Sbjct: 366 QINEMERRHPNYDEYQYNIAEIGHNPYHLISYLTAKYGDWTYSDVENELQSLFEAQYHLN 425

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSAVPKGKIKALLQIRDSVVPIFQ 287
              +  + T T         G VV+S            +       A      ++     
Sbjct: 426 TEGRTETVTETRNVRVGESLGQVVTSGYCNCRICCGVWSGGPTASGAYPTANHTIAVDAS 485

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N    +   ++ +  E       +    G+       +       G             +
Sbjct: 486 NPFVPIGTKVVMNGVEYTVEDTGAFARYGVQFDVYYDNHAAASAHGHQTWEAYIADDNGS 545

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   S  K     + N +    +     ++                  L +     
Sbjct: 546 QEVTVTSTSTKKILYVTLTNGSFDA-VARANLNAEQLIIYNALNTTYGNRNYLWD----- 599

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              +    S S    M  ++    +             EE + +I+
Sbjct: 600 ---VNNVTSGSGGNGMSYEIPPEALQ-----------DEEFARMIR 631


>gi|33596137|ref|NP_883780.1| flagellar basal body rod protein FlgB [Bordetella parapertussis
          12822]
 gi|33601538|ref|NP_889098.1| flagellar basal body rod protein FlgB [Bordetella bronchiseptica
          RB50]
 gi|33573140|emb|CAE36787.1| flagellar basal-body rod protein FlgB [Bordetella parapertussis]
 gi|33575974|emb|CAE33053.1| flagellar basal-body rod protein FlgB [Bordetella bronchiseptica
          RB50]
          Length = 135

 Score = 37.3 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50
                Q    +  NI NAD  NY  RD     + +  
Sbjct: 17 ALRAQRQ--EVLSSNIANADTPNYKARDFDFKAAMQGA 52


>gi|291613035|ref|YP_003523192.1| flagellar basal-body rod protein FlgB [Sideroxydans
          lithotrophicus ES-1]
 gi|291583147|gb|ADE10805.1| flagellar basal-body rod protein FlgB [Sideroxydans
          lithotrophicus ES-1]
          Length = 134

 Score = 37.3 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
             A Q+   I  NI NAD  NY  +D     + +     +
Sbjct: 18 LRAARQEL--IASNIANADTPNYKAKDIDFASALQGALSGS 56


>gi|187926956|ref|YP_001893301.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12J]
 gi|241665285|ref|YP_002983644.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12D]
 gi|187728710|gb|ACD29874.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12J]
 gi|240867312|gb|ACS64972.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12D]
          Length = 135

 Score = 37.3 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA------DNKNYVRRDTMTT 44
          MSL  V + A +     S++   +  N+ NA      +   Y  +  + T
Sbjct: 1  MSLFKVMDVAGSALTAQSKRMNVVASNLANAESVTGPNGTAYRAKQVVFT 50


>gi|325849055|ref|ZP_08170547.1| phage tail tape measure protein, TP901 family [Anaerococcus
            hydrogenalis ACS-025-V-Sch4]
 gi|325480300|gb|EGC83363.1| phage tail tape measure protein, TP901 family [Anaerococcus
            hydrogenalis ACS-025-V-Sch4]
          Length = 1549

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 30/414 (7%), Positives = 98/414 (23%), Gaps = 19/414 (4%)

Query: 70   HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVID 129
              ++ G   +++ F  + EM   +    +          D+    S    E  L      
Sbjct: 966  EGTSEGADGIIEEFNTMMEMGLTELDAFDEMYSKGQINVDAFGQGSAAGKEAALNIYRQL 1025

Query: 130  NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                +       A     +              +    +   +    +     S      
Sbjct: 1026 KESGLTSVEAMQAMYNMGLLNTNGFAEGTNAGKINVDAAYQALKQAGLSEADIS-EILRG 1084

Query: 190  FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
               Q      +       S     NN          ++      +       ++    ES
Sbjct: 1085 IGAQNANAFSEGIGSGQESVSSAYNNTFSNPLEARASMLFGTANEKGLNTGTNFADGIES 1144

Query: 250  NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
            + + +     +    +       + +   +   +        + ++  + S S+      
Sbjct: 1145 STMDVTSRSQALGNTAVENLKSGEGVANSKGLELGSQYAGGIDQSKSGVDSSSQAIGQGA 1204

Query: 310  NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNL- 368
             +                       +    +        + ++  G+     L +  N  
Sbjct: 1205 ANSLNAQSDSF-----AQAGKASMDAYQSAIQTGASQATANIQQMGNSIASSLSSTTNKV 1259

Query: 369  -AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS-HDLHMKSQ 426
             +    ++N    S          A  +    +     N    +        ++      
Sbjct: 1260 KSSANSMMNSLTSSVTSGANRVQSAFSSLQAKINSTFSNLTSRVTSQSRTMMNNFSSAIT 1319

Query: 427  VVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
               N +   +++    ++  ++S         + S+++    + M+  L+  ++
Sbjct: 1320 SGTNKVKNQFNSMSN-SINSKMS---------STSSRVKSLANSMMNGLVSAIR 1363


>gi|312869682|ref|ZP_07729830.1| YhgE/Pip C-terminal domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094816|gb|EFQ53112.1| YhgE/Pip C-terminal domain protein [Lactobacillus oris PB013-T2-3]
          Length = 874

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 33/413 (7%), Positives = 89/413 (21%), Gaps = 23/413 (5%)

Query: 45  ISPENVTVVTQRSENKNMFDKVLHAHSSAIGQ--QRLLQSFEALKEMMSADDHYNNSPTH 102
                V  +           + L   SS +    Q+       L   +      +   + 
Sbjct: 210 QVNNGVQQMKVAVTPLASGAQQLANGSSQLAAGIQQYTGGVGQLASGLGLLQSNSGQLSG 269

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162
              +L   L +   N     L       A    +  N  +  +  ++     +    ++ 
Sbjct: 270 GAGQLAAGLNTL--NGRSAELQSGAGQLAAGSTELNNKVSGMIPGLQQQLGSQSTTIMAQ 327

Query: 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKI------SEIIGISTIVRNNND 216
                  L  V    +                  +  ++      +     S        
Sbjct: 328 ANELQRALAPVAQTPQQLKEVSSQLGAISTTLGSVKNQLESNSGQASSTPASANNSQQLQ 387

Query: 217 MVVYTSDG---------TTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV 267
             +   +G           +              S   T   +    +  V++       
Sbjct: 388 AALAALNGAQEKDENSQNQINSAKSAIQAAMNNASNNTTPAKSGSQDNSKVIAEITAVQS 447

Query: 268 PKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLD 327
              K+K+ +    S       +++  A  L  +    D     +       +      L 
Sbjct: 448 GVDKLKSTIDASASSATASSQKIESAAAALEATLKGMDATTSATLGSASAELQGATGALA 507

Query: 328 NKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFI 387
               +  +          +  +      +   ++   V       + +     +      
Sbjct: 508 AGANKLNTGVNAYTGGVATAAAGANTLNAGIGQYTAGVAQAGAGANQLVANSPALISGAG 567

Query: 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTV 440
               A       L     + I  +    + +  L   S  + + I++      
Sbjct: 568 QLASALAQ----LNAQMPSLISGINLLAAGTQQLADNSPALISGITQLNDGAS 616


>gi|186895115|ref|YP_001872227.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           PB1/+]
 gi|186698141|gb|ACC88770.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis
           PB1/+]
          Length = 251

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++      +        ++ S           ++G    
Sbjct: 67  SQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +          +   +  + A        ++  +
Sbjct: 127 IDVPPQAAVTIAADGTISALNAGDSPNAIAQLGQI 161


>gi|94312667|ref|YP_585876.1| flagellar basal body rod protein FlgC [Cupriavidus metallidurans
           CH34]
 gi|93356519|gb|ABF10607.1| flagellar basal body rod protein FlgC [Cupriavidus metallidurans
           CH34]
          Length = 135

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 434 ESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             Y     VN  EE+  +I   +SY  + +++     M+
Sbjct: 89  NGYVTMPNVNPVEEMVNMISASRSYQANVEVLNTAKNMM 127


>gi|320354314|ref|YP_004195653.1| flagellar basal-body rod protein FlgB [Desulfobulbus propionicus
          DSM 2032]
 gi|320122816|gb|ADW18362.1| flagellar basal-body rod protein FlgB [Desulfobulbus propionicus
          DSM 2032]
          Length = 137

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 8/24 (33%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
            I  NI NA+   Y  +      
Sbjct: 26 EVIGSNIANAETPGYSAQAFSFED 49


>gi|291300354|ref|YP_003511632.1| RTX toxins and related Ca2+-binding protein-like protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290569574|gb|ADD42539.1| RTX toxins and related Ca2+-binding protein- like protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 728

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 44/409 (10%), Positives = 100/409 (24%), Gaps = 30/409 (7%)

Query: 20  QFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79
              + + NI NA      ++  +TT        V     +  +  K  +   S    + +
Sbjct: 83  AVDTALDNIANAITA---KQGQLTTAEGAITGAVPCVVGDDKINFKPANPEQSKAVIEAV 139

Query: 80  LQSFEALKEMMSADDHYNNSPTHYISKL------RDSLESYSKNLSEDILGKTVIDNAEE 133
             +     ++         +     S          S+    K   +     T +     
Sbjct: 140 RAAKGIRADLDKQLGTEAGNLKTAASDFADVTIKWGSVAEGFKEPFDLPPESTRVPRTIT 199

Query: 134 VVQNF--NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAI-------------- 177
           +        +      ++   D +  + + +     +     N  +              
Sbjct: 200 LPDGRVIMNTGTGNDDVKVTTDDKGNVIVESNGTKHTYPPGTNITVRGGQGDDTIKVDAK 259

Query: 178 -KFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDG---TTLFETVPR 233
               T+      D +D  + L     +  G +TI+  + D  V T+ G    +       
Sbjct: 260 GVQVTSLGGAGKDTIDAGNPLFPFGGDKDGNNTIISGDGDDTVTTAGGDNRVSTGAGKDT 319

Query: 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEM 293
            +  +  ++ +  S  + +   G     + G+            +         N     
Sbjct: 320 VMTGDGNDNISTYSGDDSVLDLGGKNDISTGAGADTVSAGGDNHVYSGDGADKINTGGGR 379

Query: 294 ARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
             +  G  +++       + V     AD +   D       +           N  +  D
Sbjct: 380 DVIASGEGNDRVQAGKGDDRVFAGEGADYVDGQDG-NDHLEAGAGERKTDGHGNTYYQGD 438

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLE 402
                          A          D        D V+G   + TL  
Sbjct: 439 TMYGGDGDDTLAGGDANDYLDGGTGNDKVTGGGGNDVVSGGKGDDTLDG 487


>gi|268680293|ref|YP_003304724.1| flagellar basal-body rod protein FlgB [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268618324|gb|ACZ12689.1| flagellar basal-body rod protein FlgB [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 144

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 12/35 (34%)

Query: 12 NICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
             N  + +   I  NI N D   Y  RD     +
Sbjct: 14 AGLNARAMRQDLISSNIANIDTPFYKARDIDFESA 48


>gi|228907376|ref|ZP_04071234.1| Flagellar basal-body rod protein [Bacillus thuringiensis IBL 200]
 gi|228852237|gb|EEM97033.1| Flagellar basal-body rod protein [Bacillus thuringiensis IBL 200]
          Length = 135

 Score = 37.3 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|170694389|ref|ZP_02885543.1| flagellar basal-body rod protein FlgB [Burkholderia graminis
          C4D1M]
 gi|170140812|gb|EDT08986.1| flagellar basal-body rod protein FlgB [Burkholderia graminis
          C4D1M]
          Length = 163

 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 9/26 (34%)

Query: 25 VRNIENADNKNYVRRDTMTTISPENV 50
            NI NAD   Y  RD     S    
Sbjct: 27 SSNIANADTPGYKARDVDFASSLAGA 52


>gi|182679722|ref|YP_001833868.1| flagellar basal body rod protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635605|gb|ACB96379.1| flagellar basal body rod protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 240

 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/215 (7%), Positives = 49/215 (22%), Gaps = 11/215 (5%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           + +    + +      ++  +I  NI N     Y   D   +                  
Sbjct: 1   MQSNLYVSLSGQVMLERRLTTIATNIANQSVAGYRAEDVNFSTILS--KTDKYPVAYAGT 58

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               +   +  + +           +   A      +      ++         ++    
Sbjct: 59  GRTHISREAGLLSKTDNPLDVAIQGDGWFAMQTPAGTVYTRDGRMHMQATGELVSVDNHP 118

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND------- 175
           +                 +  +   I  +  +   + +  L          N        
Sbjct: 119 ILDAGNTPLLVDPDAGPITIAKDGMITQNGRQIGAIGLFQLDDNAKLQHYHNSGVLSDRQ 178

Query: 176 --AIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
             A+   TA+              + ++S++I +S
Sbjct: 179 GVAVLDFTANGIAQGYVESANVNPILELSKLITVS 213


>gi|182418416|ref|ZP_02949710.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521]
 gi|237666817|ref|ZP_04526802.1| flagellar basal body rod protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377798|gb|EDT75342.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521]
 gi|237658016|gb|EEP55571.1| flagellar basal body rod protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 259

 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 3/178 (1%)

Query: 298 IGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSV 357
                                 A   +           +    +  ++ N          
Sbjct: 74  TSDVETIFTQGSFKSTDKQTDFAIDGRGFFVARNANGQQVYTRDGNFKVNQQGYLITNDG 133

Query: 358 SKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLL--EYARNSIGWLEKNR 415
            +    N    A  P  + +   S + N   D +AG+     L+  ++       LE   
Sbjct: 134 CEVMGNNNTTGATEPIYVGNMNFSLDSNNNID-LAGVGATHKLVTVDFDNEDYKNLEPLG 192

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQ 473
            +             ++ ++   +  V+  +E+  L++V++ +  + K I   D+ +Q
Sbjct: 193 DNYVTTANPIYNARVNVVQNALESSNVDSTDEMIKLMQVKRQFETNQKFIKMQDETVQ 250


>gi|87119679|ref|ZP_01075576.1| flagellar basal-body rod protein FlgB [Marinomonas sp. MED121]
 gi|86165155|gb|EAQ66423.1| flagellar basal-body rod protein FlgB [Marinomonas sp. MED121]
          Length = 133

 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 3  LLAVFNKAQNI----CNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          +   F  A           S + A +  NI NAD  NY  RD   + +
Sbjct: 1  MAISFESAFAGHDKFLKFRSDRSAVLANNIANADTPNYKARDISFSSA 48


>gi|87119675|ref|ZP_01075572.1| hypothetical protein MED121_07040 [Marinomonas sp. MED121]
 gi|86165151|gb|EAQ66419.1| hypothetical protein MED121_07040 [Marinomonas sp. MED121]
          Length = 247

 Score = 37.3 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 28/128 (21%), Gaps = 8/128 (6%)

Query: 3   LLAVFNKAQNI---CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
           +      A +      +A         N+ N +   + R D     +             
Sbjct: 1   MDRALYLAMSGGKQIMHAQT---VRANNLANVNTTGF-RADFEQARAMPVYGEHYASRVY 56

Query: 60  KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSAD-DHYNNSPTHYISKLRDSLESYSKNL 118
               +      S A+ Q           +   A  DH           L+ +      N 
Sbjct: 57  SMTENPATRYESGALIQTDRPLDIAMQGDGFIAVLDHQGAEAYTRSGDLQITANGQLVNG 116

Query: 119 SEDILGKT 126
           S   +   
Sbjct: 117 SGLPIMGA 124


>gi|254416042|ref|ZP_05029798.1| haemagglutination activity domain protein [Microcoleus chthonoplastes
            PCC 7420]
 gi|196177217|gb|EDX72225.1| haemagglutination activity domain protein [Microcoleus chthonoplastes
            PCC 7420]
          Length = 1785

 Score = 36.9 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 35/431 (8%), Positives = 100/431 (23%), Gaps = 35/431 (8%)

Query: 9    KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
               +  N A    +S+  N                + +                 D    
Sbjct: 853  SGASGINTAQIDASSVSGN----------GGTISFSSAG----------------DINTT 886

Query: 69   AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
               ++           +    ++      +S +     +  S      + ++        
Sbjct: 887  EIDASAESGDGGTISFSGASDINTAQIDASSVSGNGGTVSFSGFVDIADGTDTGQMTFSF 946

Query: 129  DNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAH 188
               +++       +     +  +        +  +     + + V+      + S  D  
Sbjct: 947  SPPDDISTQQIDVSS----VSGNGGTVSLFSVGEINTAQIDASSVSGNGGTVSFSSADEV 1002

Query: 189  DFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSE 248
                    +   +S + G+S I     D    + +G T+  +   +I  E++++ +V+ +
Sbjct: 1003 TVDTDSGQVTLSLS-LSGVSEINTAKIDASSDSGNGGTVTVSGAGEIKTEQIDTSSVSGD 1061

Query: 249  SNPIFI---DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
               I       +  +    S+         L   D +     +           + S  D
Sbjct: 1062 GGTISFSSAGNIDTAQIDTSSASGNGGAIALSAGDDINTAQIDTSSASGNGGAIALSAGD 1121

Query: 306  PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
             I     N             +  L    +  +        +     D    +  F    
Sbjct: 1122 DINTAQINTSSASDESIGNGGNVTLNAQGNVQVTSINAQGGDSGMGGDVDITANGFFSAT 1181

Query: 366  KNLAGYPDLINHYCDSFNKNFIF-DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMK 424
                   ++      +            G    +       +  G      + + +  + 
Sbjct: 1182 GTFTDQNNIDTSISTAAGSEGGQVIIRHGGGVGIAFDVGNASLNGTAGAITTGTDNSILP 1241

Query: 425  SQVVFNHISES 435
             Q      S+ 
Sbjct: 1242 PQSFSGSYSQG 1252


>gi|168783607|ref|ZP_02808614.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7
           str. EC4076]
 gi|188999091|gb|EDU68077.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7
           str. EC4076]
          Length = 251

 Score = 36.9 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 55/235 (23%), Gaps = 2/235 (0%)

Query: 237 FEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296
           +  M + + T     +    +  +S  G       ++A+     S+              
Sbjct: 6   YTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGAD 65

Query: 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGS 356
           +     +      +       ++A    D      +  S  +    Q       +     
Sbjct: 66  ITPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPVIGEAG 125

Query: 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDP-VAGINTNVTLLEYARNSIGWLEKNR 415
                      +A    +                 +  +    + ++   + I  L    
Sbjct: 126 PIAVPEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGIFRLSAET 185

Query: 416 SDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
             +    +        +         VN    ++ +I   + + +  K+I   + 
Sbjct: 186 Q-ATRGPVLQADPTLRVMSGVLEGSNVNAVAAMTDMIATARRFEMQMKVITTVND 239


>gi|89056689|ref|YP_512140.1| flagellar basal body rod protein FlgB [Jannaschia sp. CCS1]
 gi|88866238|gb|ABD57115.1| flagellar basal-body rod protein FlgB [Jannaschia sp. CCS1]
          Length = 117

 Score = 36.9 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 12 NICNNASQQF-ASIVRNIENADNKNYVRRDT 41
          +     S    A + +NI NAD   Y  RD 
Sbjct: 12 SGLARHSASRQAVVAQNIANADTPGYRARDV 42


>gi|126463751|ref|YP_001044865.1| flagellar basal body rod protein FlgB [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332559807|ref|ZP_08414129.1| FlgB2 [Rhodobacter sphaeroides WS8N]
 gi|126105415|gb|ABN78093.1| flagellar basal-body rod protein FlgB [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332277519|gb|EGJ22834.1| FlgB2 [Rhodobacter sphaeroides WS8N]
          Length = 127

 Score = 36.9 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 1/37 (2%)

Query: 22 ASIVRNIENADNKNYVRRDT-MTTISPENVTVVTQRS 57
            +  N+ NAD   Y  +D             +    
Sbjct: 23 EVVAHNLANADTPGYRAQDLPEFESYASGTVGLRTTR 59


>gi|76808961|ref|YP_331880.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           1710b]
 gi|126452329|ref|YP_001064565.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           1106a]
 gi|167736704|ref|ZP_02409478.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           14]
 gi|167822319|ref|ZP_02453790.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 9]
 gi|167909128|ref|ZP_02496219.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           112]
 gi|226199728|ref|ZP_03795279.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314788|ref|ZP_04813804.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1106b]
 gi|254196477|ref|ZP_04902901.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           S13]
 gi|254260132|ref|ZP_04951186.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1710a]
 gi|254295815|ref|ZP_04963272.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           406e]
 gi|14091669|gb|AAK53815.1|AF370881_1 flagellar basal-body rod protein [Burkholderia pseudomallei]
 gi|76578414|gb|ABA47889.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1710b]
 gi|126225971|gb|ABN89511.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1106a]
 gi|157805973|gb|EDO83143.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           406e]
 gi|169653220|gb|EDS85913.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           S13]
 gi|225928079|gb|EEH24115.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138027|gb|EES24429.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1106b]
 gi|254218821|gb|EET08205.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1710a]
          Length = 253

 Score = 36.9 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/142 (7%), Positives = 30/142 (21%), Gaps = 19/142 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-------MTTISPENVTVVTQ 55
           +  +   A      + +Q + +  N+ NA    +  +                NV   T 
Sbjct: 1   MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60

Query: 56  RSEN------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           R+         +     +    + +        + ++                    L  
Sbjct: 61  RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVM------LPDGTEAYTRAGNLHV 114

Query: 110 SLESYSKNLSEDILGKTVIDNA 131
                    +   +       A
Sbjct: 115 DQNGQLVTANNLPVVGNGGPLA 136


>gi|317401378|gb|EFV82013.1| filamentous hemagglutinin/adhesin [Achromobacter xylosoxidans C54]
          Length = 2770

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 39/429 (9%), Positives = 109/429 (25%), Gaps = 14/429 (3%)

Query: 2    SLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKN 61
            S  + F    +    A +    +  N+          ++ +   +  NV +V  ++ ++ 
Sbjct: 1646 SASSTF-TGDSAVLMAGRDLNVVGSNVA--------AQNDLVMSADRNVNIVAAQNTSEE 1696

Query: 62   MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSED 121
               + +    S  G    L      +  +   D   ++ +   S   ++L +  K+L+  
Sbjct: 1697 YQYEKVKK--SGFGAMGGLSYGSRQQTDILDGDKVLHTASTVGSVQGNALINAGKSLNVV 1754

Query: 122  ILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT 181
                        ++      A  V   R     E++    ++      L+ +  A K   
Sbjct: 1755 GSNVLARQGDVTLIGRDVNIAAAVDTAREKEFHEVKQSGLSINASTPLLSAMQTASKMSN 1814

Query: 182  ASKHDAHDFLDQRDVLLQKISE---IIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
            A+    +  +    +    ++       I    R    + +    G++  ++     +  
Sbjct: 1815 AAGKTDNKVMQGLALATTGLAGVNAYDAIQADPRAAGGLNISIDLGSSKSQSTTERESAS 1874

Query: 239  KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
               S         +   G   +SN               I+       +   +   +   
Sbjct: 1875 VRGSTVAAGRDLTVIAQGGGQASNVTVTGSSLSAGNNAAIKADGDIALRAAQNTFEQHST 1934

Query: 299  GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
               +      G +    G+     +     +      +T   +    +        G  +
Sbjct: 1935 NKSTNASIGVGVTVGSQGVGFTLNVAASAARGKADGKDTSWTSSTVTAGKVLGLQSGGDT 1994

Query: 359  KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDS 418
                   +       + N+      ++         +  +            +  N S S
Sbjct: 1995 SLIGAIGQADRIVASVGNNLRIETLQDISTYASKQQSAGIAGSLCYGYCTSTISGNVSQS 2054

Query: 419  HDLHMKSQV 427
                     
Sbjct: 2055 QMKSNFKSA 2063


>gi|51596012|ref|YP_070203.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           IP 32953]
 gi|153947059|ref|YP_001401289.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           IP 31758]
 gi|170024646|ref|YP_001721151.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis
           YPIII]
 gi|51589294|emb|CAH20915.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis
           IP 32953]
 gi|152958554|gb|ABS46015.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis
           IP 31758]
 gi|169751180|gb|ACA68698.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis
           YPIII]
          Length = 251

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ NA    +  +       P +   +  R+        V  
Sbjct: 7   TAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++      +        ++ S           ++G    
Sbjct: 67  SQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
            +          +   +  + A        ++  +
Sbjct: 127 IDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|315927025|gb|EFV06380.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni
          subsp. jejuni DFVF1099]
          Length = 144

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 17/68 (25%)

Query: 21 FASIVRNIENADN----KN--YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
             I  NI NA+     +   Y RR+ +   +           +   + ++ ++  ++ +
Sbjct: 1  MNVISSNIANANTTRTAEGGPYRRREVIFKAT-----------DFDKLLNEQINKDNNFL 49

Query: 75 GQQRLLQS 82
            +  L  
Sbjct: 50 KYENPLND 57


>gi|300703250|ref|YP_003744852.1| hypothetical protein RCFBP_10912 [Ralstonia solanacearum CFBP2957]
 gi|299070913|emb|CBJ42215.1| conserved exported protein of unknown function, putative
           rhs-related protein [Ralstonia solanacearum CFBP2957]
          Length = 895

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/390 (7%), Positives = 76/390 (19%), Gaps = 12/390 (3%)

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
              G    L  ++         + Y  +      + R+   +       + L +      
Sbjct: 252 GVSGGAGTLTGWQYTVAETGVVETYGTNGKLMSVRERNGRTTTLTYNPSNQLMQVTAPTG 311

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
             +      +   +  + A      +   +      +     N   ++            
Sbjct: 312 RNLTFAH-DAQGRIIGVTAPDGAITQYAYNANGMLTAVTWPGNITRQYVYEDARFPTALT 370

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
              D    + +     +   +        T            +     +     +S    
Sbjct: 371 GVIDEAGVRYATY---TYDDQGRAITSELTGGADRYQFQYLSNGQTTVLLPDGGSSVYGF 427

Query: 252 IFIDGVVVSSNQGSAVP-KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310
           +  +G+++ +   +     G          S     +   D            +     +
Sbjct: 428 LKQNGILLPTGTTAPCALCGSTAQSTDYDSSGNATRKAGYDGAVTTYAYDAFGRQVQRVD 487

Query: 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370
                              L    +    +          L    +V+      V     
Sbjct: 488 DAGAANATTFTTEWHPTWNLPIRAASPGKLETFVYDTVGNLVSYTTVATNDASGVAGFRA 547

Query: 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFN 430
            P       D           A   T          S       ++ +      +  V  
Sbjct: 548 APTGDVVKTDWTYDGAGRLVTASELTGTVATGSWALSYDAQGNVQTLTDSNGRTATAVKY 607

Query: 431 HISESYSNTVGVNLQEELSFLIKVEQSYNI 460
             +        VN   E     + + SYN 
Sbjct: 608 DAAGRLLEV--VNTDGE-----RTKYSYNA 630


>gi|228914322|ref|ZP_04077937.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228845316|gb|EEM90352.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 138

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|229096229|ref|ZP_04227202.1| Flagellar basal-body rod protein [Bacillus cereus Rock3-29]
 gi|228687189|gb|EEL41094.1| Flagellar basal-body rod protein [Bacillus cereus Rock3-29]
          Length = 138

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|229102342|ref|ZP_04233050.1| Flagellar basal-body rod protein [Bacillus cereus Rock3-28]
 gi|229115184|ref|ZP_04244594.1| Flagellar basal-body rod protein [Bacillus cereus Rock1-3]
 gi|228668324|gb|EEL23756.1| Flagellar basal-body rod protein [Bacillus cereus Rock1-3]
 gi|228680989|gb|EEL35158.1| Flagellar basal-body rod protein [Bacillus cereus Rock3-28]
          Length = 135

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|229172390|ref|ZP_04299949.1| Flagellar basal-body rod protein [Bacillus cereus MM3]
 gi|228610861|gb|EEK68124.1| Flagellar basal-body rod protein [Bacillus cereus MM3]
          Length = 135

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|197122865|ref|YP_002134816.1| flagellar basal-body rod protein FlgC [Anaeromyxobacter sp. K]
 gi|196172714|gb|ACG73687.1| flagellar basal-body rod protein FlgC [Anaeromyxobacter sp. K]
          Length = 140

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTISP 47
          M  L+  N + +       +      N+ NA+         Y R D +    P
Sbjct: 1  MDFLSALNVSASGLAAERVRVNLAASNLANAETTRGPDGQPYRRLDPVLEAVP 53



 Score = 36.5 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E+  L+  +++Y  +   +     M Q  LE  +
Sbjct: 107 EIVNLMSAQKAYEANATAVDTLKTMAQRALEIAR 140


>gi|15895433|ref|NP_348782.1| flagellar basal body rod protein FlgC [Clostridium acetobutylicum
          ATCC 824]
 gi|15025157|gb|AAK80122.1|AE007716_11 Flagellar basal body rod protein FlgC [Clostridium acetobutylicum
          ATCC 824]
 gi|325509579|gb|ADZ21215.1| flagellar basal body rod protein FlgC [Clostridium acetobutylicum
          EA 2018]
          Length = 143

 Score = 36.9 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 6/40 (15%)

Query: 13 ICNNASQQFASIVRNIENADNK----N--YVRRDTMTTIS 46
            +    +  +I  NI N           Y R+  +   +
Sbjct: 13 GLSAERLRMDTISSNIANISTTRTADGGPYRRKVAVFQDN 52


>gi|229155314|ref|ZP_04283425.1| Flagellar basal-body rod protein [Bacillus cereus ATCC 4342]
 gi|228628239|gb|EEK84955.1| Flagellar basal-body rod protein [Bacillus cereus ATCC 4342]
          Length = 135

 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|295097202|emb|CBK86292.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 245

 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 19/39 (48%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           +S        V+  + ++ +I   +S+ ++ K+I   D+
Sbjct: 195 LSPESLEGSNVSPVKAMTEMIATARSFEMNMKVIRTADE 233


>gi|187932920|ref|YP_001885038.1| flagellar basal body rod protein FlgB [Clostridium botulinum B
          str. Eklund 17B]
 gi|187721073|gb|ACD22294.1| flagellar basal-body rod protein FlgB [Clostridium botulinum B
          str. Eklund 17B]
          Length = 133

 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
              ++ +  +I  N+ N + K Y + + +   +
Sbjct: 18 GLKASNARSKAIANNMANINTKGYKKFNVIFEEN 51


>gi|83648025|ref|YP_436460.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396]
 gi|83636068|gb|ABC32035.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396]
          Length = 82

 Score = 36.9 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 7/80 (8%)

Query: 407 SIGWLEKNRSDSHDLHMKSQVVFNHIS--ESYSNTVG----VNLQEE-LSFLIKVEQSYN 459
               L+             +     I+         G    V+   E +  L   E    
Sbjct: 2   ISSVLQSGVQGVKQNLQGMEKAATEIAKVGQPVEESGELRTVDDAVESIVDLKLYENGVK 61

Query: 460 ISNKLIMFTDKMLQTLLEGV 479
            S K+I   D+ L TLL+  
Sbjct: 62  ASAKVIKTADETLGTLLDIK 81


>gi|228478134|ref|ZP_04062745.1| phage infection protein [Streptococcus salivarius SK126]
 gi|228250314|gb|EEK09567.1| phage infection protein [Streptococcus salivarius SK126]
          Length = 789

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 43/449 (9%), Positives = 111/449 (24%), Gaps = 11/449 (2%)

Query: 15  NNASQQFASIVRNIENADN-KNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSA 73
           +  S+   ++ +NI         V +                             + + +
Sbjct: 144 SAMSKLKDTVSKNIT--STYVGAVFKSMTQLQGGMGTAANGASQLYAGAGALQSGSQTLS 201

Query: 74  IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL----SEDILGKTVID 129
            G   L  S + L   +       ++ T  +S L  +L   + N     S      +  D
Sbjct: 202 SGLGTLAGSTQTLATGVDTLSSGASAYTSGVSTLSGALSQLNANSEAVNSAAGQFVSGAD 261

Query: 130 NAEEVVQNFNTSAREVQKIRADAD----KEIELEISNLRRFLSELTVVNDAIKFKTASKH 185
               +V   ++ +  + ++         ++ +L   +         + N        S  
Sbjct: 262 AMSTLVTGADSLSTALSQMATATSLSEEQQAQLSTLSTNLTDLNTAIQNLNTAVSKTSLP 321

Query: 186 DAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTV 245
                       +      I  +             +D   +  T           +   
Sbjct: 322 SGTSTTSVDTSSIATYLSNISSAASSIATASATDKANDLAAVQGTAAYQSLTADQQAEIT 381

Query: 246 TSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKD 305
           ++ SN         S+            + L    +      + L  +   + G  S  +
Sbjct: 382 SAISNAGSTASSYASTIASEVSSMSTALSSLTGTTTTSSGDSSSLASLQTSISGIASSAN 441

Query: 306 PIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNV 365
            +   + +      A+        + Q     I V     +  S L  G S     L   
Sbjct: 442 ALLPVASSTVSSMQANIANVNSVLVNQLSPGAIQVASGVSTAQSTLATGASALSTGLSTY 501

Query: 366 KNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKS 425
                         D+ + + +       +    L   A+          +    L    
Sbjct: 502 TGAVSTIASGAQTLDANSSSLMTGFSTLQSGTSALNAGAQQLATGGNTLTNGLTSLSTNL 561

Query: 426 QVVFNHISESYSNTVGVNLQEELSFLIKV 454
             + + ++++      V++  + + ++  
Sbjct: 562 STLSDSLNKANQQLSLVSVNSDNAKMVSA 590


>gi|51594999|ref|YP_069190.1| hypothetical protein YPTB0648 [Yersinia pseudotuberculosis IP
           32953]
 gi|170025773|ref|YP_001722278.1| type VI secretion system Vgr family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186894000|ref|YP_001871112.1| type VI secretion system Vgr family protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588281|emb|CAH19888.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|169752307|gb|ACA69825.1| type VI secretion system Vgr family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186697026|gb|ACC87655.1| type VI secretion system Vgr family protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 782

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/114 (7%), Positives = 29/114 (25%), Gaps = 9/114 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           F+ +    + ++   +                  T  + S   V+V      + +     
Sbjct: 540 FSFSVTGMSVSATGISV--------STTGTSLSVTGMSTSVTGVSVG-FTLIDTSFTGVS 590

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                          S   +   M+         ++ ++    S+   S +++ 
Sbjct: 591 TSFTGVGTSFTGASNSLTGVSNSMTGCSSSFTGTSNSMTGSSHSMTGMSTSITG 644


>gi|114330362|ref|YP_746584.1| flagellar basal body rod protein FlgF [Nitrosomonas eutropha C91]
 gi|114307376|gb|ABI58619.1| flagellar basal-body rod protein FlgF [Nitrosomonas eutropha C91]
          Length = 247

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 28/129 (21%), Gaps = 12/129 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE---- 58
           +  +   A     +   Q A++  N+ NA    +  +       P     +  R+     
Sbjct: 1   MDRLIYTAMTGALHTLTQQATVSHNLANASTTGFRAQADAFRAVPVYGESLPTRAFVLDS 60

Query: 59  --NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               +     +      +        +  ++                   L+       +
Sbjct: 61  TTGADFTPGAIQQTDRPLDVAIQGSGWITVQ------LENGEEAYTRHGNLKTDANGVLQ 114

Query: 117 NLSEDILGK 125
                 +  
Sbjct: 115 TQQGFNIKG 123


>gi|253990126|ref|YP_003041482.1| flagellar basal-body rod protein flgf [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781576|emb|CAQ84739.1| flagellar basal-body rod protein flgf (putative proximal rod
           protein) [Photorhabdus asymbiotica]
          Length = 251

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 28/127 (22%)

Query: 22  ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ 81
           A    N+ NA    +  +       P        R+          +         R L 
Sbjct: 20  AVTANNLANASTPGFKAQLAALRAVPVEGAAFNTRTLVVASTPGSDNRQGPMNYTARPLD 79

Query: 82  SFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTS 141
                   ++      +        ++ S +         ++ +    +     +    +
Sbjct: 80  VAIGQGGYLAVQLEDGSEAYTRNGSIQISADGQLTVQGNLLMSENGPIDVPPQAELTLAA 139

Query: 142 AREVQKI 148
              +  +
Sbjct: 140 DGSISAL 146


>gi|238755323|ref|ZP_04616666.1| Flagellar basal-body rod protein flgF [Yersinia ruckeri ATCC 29473]
 gi|238706459|gb|EEP98833.1| Flagellar basal-body rod protein flgF [Yersinia ruckeri ATCC 29473]
          Length = 251

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 42/173 (24%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +      A        +Q A    N+ NA    +  + +     P +   +  R+     
Sbjct: 1   MDHAIYTAMGAARQTLEQQAVTANNLANASTPGFRAQLSALRAVPIDGPSMATRTLVTAS 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 +        R L         M+               ++ +           +
Sbjct: 61  TPGADMSQGPMNFSGRPLDVALQQDGFMAVQLPDGTEAYTRNGNIQVAANGQMTVQGYPL 120

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
           +G     +     +    +   +  + A        +I  L+   ++   +N 
Sbjct: 121 MGDNGPIDVPPQAEVTIAADGTISALNAGDPPNTIAQIGRLKLVQAQGNELNR 173


>gi|171059411|ref|YP_001791760.1| flagellar basal-body rod protein FlgF [Leptothrix cholodnii SP-6]
 gi|170776856|gb|ACB34995.1| flagellar basal-body rod protein FlgF [Leptothrix cholodnii SP-6]
          Length = 241

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/121 (8%), Positives = 23/121 (19%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
              +        Q+  ++  N+ N     +          P      T R+         
Sbjct: 5   IYLSMGGAKATMQRQETLANNLANVSTVGFRAEMQAFRAVPVRGDGATTRAYALETTTGY 64

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126
             A  +     R L         ++               L    +      +   +   
Sbjct: 65  NPAQGNITATGRNLDVAMQGNGWLAVQSLDGTEAYTRAGALNVMPDGLLVGSNGLPVLGD 124

Query: 127 V 127
            
Sbjct: 125 G 125


>gi|167948872|ref|ZP_02535946.1| Flagellar basal-body rod protein FlgC [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 124

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 26/77 (33%)

Query: 402 EYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNIS 461
           +     +  +    S +  +   +          Y     VN  EE++ +I   +SY  +
Sbjct: 46  DAPAVGVSMVGVIESQAPLIREYAPDHQMADEAGYIFRPNVNPVEEMANMISASRSYQGN 105

Query: 462 NKLIMFTDKMLQTLLEG 478
            ++     ++L   L  
Sbjct: 106 VEVASAAKQLLMATLRM 122


>gi|33592480|ref|NP_880124.1| flagellar basal body rod protein FlgF [Bordetella pertussis Tohama
           I]
 gi|33572126|emb|CAE41668.1| flagellar basal-body rod protein FlgF [Bordetella pertussis Tohama
           I]
 gi|332381897|gb|AEE66744.1| flagellar basal body rod protein FlgF [Bordetella pertussis CS]
          Length = 254

 Score = 36.9 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 28/143 (19%), Gaps = 4/143 (2%)

Query: 3   LLAVFNKAQNICNNASQQ--FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           +  +   A N    A        +  N+ N +   +  +  +    P           + 
Sbjct: 1   MDRIIYTAMNG--AARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVST 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                  +     +                 A              L+  +    +  + 
Sbjct: 59  VASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
             +        E   Q   T A 
Sbjct: 119 QPVLSDQNAVIEVPDQASLTIAS 141


>gi|171915629|ref|ZP_02931099.1| Rhs family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 2241

 Score = 36.9 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 41/448 (9%), Positives = 101/448 (22%), Gaps = 35/448 (7%)

Query: 32   DNKNYVRRDTMTTISP-----ENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL 86
            +   +      +         + V  + +        D  +    +         + +A 
Sbjct: 799  NTTTFHYGTVGSNGLGWDDPIQQVNALGKSRYFTYDDDTRVMKSMTDERGTLTSYTIQAG 858

Query: 87   KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
              + + +       T  ++        ++  L+   +  T     + V +    +   VQ
Sbjct: 859  TGLRTKETISKGGSTLRVTDFDYGAGGFAGFLARTTVQSTTATGGDLVTEYTPDANGRVQ 918

Query: 147  KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL----DQRDVLLQKIS 202
            K    A   IEL  S           V +     T   +DA        +  D   + + 
Sbjct: 919  KEAVTAGGGIELVTSYTYTGNGSKKTVTNPRGHTTTFTYDAQSLRLTGVENPDSTTRTLG 978

Query: 203  EIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSN 262
                 +     N   V  T +   L       ++ +        +    + +        
Sbjct: 979  YDAHGNLTSEVNERGVTTTHEYDALNRRKKSTVDMDDGADLASETTYTALNLPHTETDPR 1038

Query: 263  QGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADG 322
                           +          +L         + +       NS           
Sbjct: 1039 GT-------------VTTHTYDGIGRRLTTTVGSGGDAQTTTCTYGANSGGSVFDVSGFK 1085

Query: 323  IKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSF 382
               + +   +  + T     +           G+       +  N     D +N    + 
Sbjct: 1086 PTTITDPRGKVTTITYDGLYRP---TVKQLPEGNTVTTTYDDAGNPEEVKDALNRITKTT 1142

Query: 383  NKNFIFDPVAGINTNVTLLEYAR-NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441
                            T   Y   + + W   +      L    +     +  +     G
Sbjct: 1143 FDGLNRPTQVEYPDATTQHSYYTPSGLVWKVVDELGRETLTQYDRAGR-AVEVTLPEVNG 1201

Query: 442  VNLQEELSFLIKVEQSYNISNKLIMFTD 469
            V+           + +Y+ +  +I   D
Sbjct: 1202 VSP--------VTKTAYDANGNVIAVQD 1221


>gi|56460254|ref|YP_155535.1| flagellar basal body rod protein [Idiomarina loihiensis L2TR]
 gi|56179264|gb|AAV81986.1| Flagellar basal body rod protein [Idiomarina loihiensis L2TR]
          Length = 150

 Score = 36.9 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MSL  +FN   +  +  S +  +   N+ NA+
Sbjct: 1  MSLFNIFNVTGSAMSAQSVRLNTTASNLANAN 32


>gi|159045787|ref|YP_001534581.1| flagellar basal body rod protein FlgB [Dinoroseobacter shibae DFL
          12]
 gi|157913547|gb|ABV94980.1| flagellar basal-body rod protein FlgB [Dinoroseobacter shibae DFL
          12]
          Length = 126

 Score = 36.9 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1  MSLLAVFNKAQNICNNASQ-QFASIVRNIENADNKNYVRRDT-MTTISPENVTVVTQRSE 58
          M  L + N A +     +  +   I RNI +AD   Y  +D    T S   +T    R+ 
Sbjct: 1  MKNLTILNTA-SAMVAHANERHGVIARNIAHADTPGYRTQDLKDFTDSYREMTSSGLRAT 59

Query: 59 NKN 61
            +
Sbjct: 60 RDD 62


>gi|307208110|gb|EFN85614.1| Endochitinase [Harpegnathos saltator]
          Length = 1950

 Score = 36.9 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/370 (6%), Positives = 79/370 (21%), Gaps = 3/370 (0%)

Query: 77  QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQ 136
                ++   +          ++       +  S+  YS                  +  
Sbjct: 517 SESGSAYTRTEYDYRGYSMETSAGLGTGGYVTGSIPRYSTTGMGYSGADYSKTAGAGIHG 576

Query: 137 NFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
               S              I              +         T     +         
Sbjct: 577 TSGPSYFGFTTGHVGEHASISTSDDGRISGHGSSSPFAVGYSGSTGQYGGSVPVSSYSGS 636

Query: 197 LLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDG 256
               ++ +    ++  +       +  G+T        + + K +S    +ES+ I    
Sbjct: 637 PGIHVASVSPGISVGGSAGYPTASSGIGSTGHTMSSGGVGYTKYSSGYAKTESSGIATGI 696

Query: 257 VVVSSNQGS-AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVP 315
              +    S    +  +            +  +    +    +        ++ +     
Sbjct: 697 SGSTVGGYSGTFGRDHLTGQGVTYSGTPGVGYSSTLGVHTGGVSGSHPVAGVSYSKPETS 756

Query: 316 GLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375
                +                   +    +  +     G  +   +++          I
Sbjct: 757 YFGSTEAFGPSTGIRADLNGPKHDGSTSLYTGSNIFNVDGYSASTNVYSGATRGQPSSSI 816

Query: 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435
                S  K    +  +G++   ++      S   + ++ S +       Q     +   
Sbjct: 817 EGLYGSVPKTSYPEATSGVDITGSINRGYTGSSTEVYRDSSATAYSKTTDQTDVGSVEIG 876

Query: 436 --YSNTVGVN 443
               ++ G++
Sbjct: 877 VNLPSSSGID 886


>gi|225871925|ref|YP_002753379.1| flagellar basal-body rod protein FlgC [Acidobacterium capsulatum
          ATCC 51196]
 gi|225793067|gb|ACO33157.1| flagellar basal-body rod protein FlgC [Acidobacterium capsulatum
          ATCC 51196]
          Length = 165

 Score = 36.9 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTTISPENVTVVT 54
          M+LL + + + +       +   +  N+ NA+         Y+R++ + +          
Sbjct: 1  MNLLGLLDVSGSALEAERIRAEVVAANMANANTTRTASGGPYLRKEVVFSS-----QAPE 55

Query: 55 QRSENKNMFDKVLHAHSSAIGQQRLLQSFEA 85
            +      D+      + +  Q +      
Sbjct: 56 PGAFANQFADQFAGGAEAPVSLQAMAGGMAE 86


>gi|225863602|ref|YP_002748980.1| flagellar basal-body rod protein FlgB [Bacillus cereus 03BB102]
 gi|229183935|ref|ZP_04311151.1| Flagellar basal-body rod protein [Bacillus cereus BGSC 6E1]
 gi|225786134|gb|ACO26351.1| flagellar basal-body rod protein FlgB [Bacillus cereus 03BB102]
 gi|228599587|gb|EEK57191.1| Flagellar basal-body rod protein [Bacillus cereus BGSC 6E1]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|306820110|ref|ZP_07453758.1| flagellar basal-body rod protein FlgB [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551888|gb|EFM39831.1| flagellar basal-body rod protein FlgB [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 133

 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
              +   +  S +  SI  N+ N +  NY R+      
Sbjct: 8  LGTMKTALDAYSMRNESISSNLANVNTPNYKRKYVRFEE 46


>gi|27904802|ref|NP_777928.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          Bp (Baizongia pistaciae)]
 gi|46395818|sp|Q89AH9|FLGC_BUCBP RecName: Full=Flagellar basal-body rod protein flgC
 gi|27904200|gb|AAO27033.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str.
          Bp (Baizongia pistaciae)]
          Length = 136

 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYV 37
          MSL  +FN + +     S++     +N+ N+D+  Y 
Sbjct: 1  MSLFNIFNISGSALETQSKKMDVHAKNLANSDSYIYK 37


>gi|325274805|ref|ZP_08140832.1| flagellar basal body rod protein FlgB [Pseudomonas sp. TJI-51]
 gi|324100050|gb|EGB97869.1| flagellar basal body rod protein FlgB [Pseudomonas sp. TJI-51]
          Length = 136

 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD   +  
Sbjct: 1  MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFSSV 48


>gi|300114801|ref|YP_003761376.1| flagellar basal-body rod protein FlgC [Nitrosococcus watsonii
          C-113]
 gi|299540738|gb|ADJ29055.1| flagellar basal-body rod protein FlgC [Nitrosococcus watsonii
          C-113]
          Length = 137

 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46
          MSL  VF+ A    +  + +  +   N+ NAD+ +      Y  R  +    
Sbjct: 1  MSLFKVFDIAGTAMSAQTLRLNTTASNLANADSVSSSIHQTYRARQPVFATL 52


>gi|238028851|ref|YP_002913082.1| flagellar basal body rod protein FlgC [Burkholderia glumae BGR1]
 gi|237878045|gb|ACR30378.1| Flagellar basal-body rod protein FlgC [Burkholderia glumae BGR1]
          Length = 141

 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI---------S 46
          SL+ +F+ A +  +  SQ+      N+ NAD+        Y  +  +            S
Sbjct: 3  SLMNIFDVAGSAMSAESQRLNVTASNLANADSVTGPDGKPYRAKQVVFETQPLGGARTRS 62

Query: 47 PENVTVVTQRSENKN 61
           + V  V  +    +
Sbjct: 63 GQGVGGVQVKQVIDD 77


>gi|255592868|ref|XP_002535736.1| conserved hypothetical protein [Ricinus communis]
 gi|223522123|gb|EEF26647.1| conserved hypothetical protein [Ricinus communis]
          Length = 274

 Score = 36.9 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 2/25 (8%)

Query: 13  ICNNASQQFASIVRNIENADNKNYV 37
                 Q+   +  NI NAD   Y 
Sbjct: 177 GLRAYRQEL--LASNIANADTPGYK 199


>gi|307721125|ref|YP_003892265.1| hypothetical protein Saut_1205 [Sulfurimonas autotrophica DSM
          16294]
 gi|306979218|gb|ADN09253.1| protein of unknown function DUF1078 domain protein [Sulfurimonas
          autotrophica DSM 16294]
          Length = 101

 Score = 36.9 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 6/60 (10%), Positives = 19/60 (31%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           +   +          +   N+ N +   +V +DT  +    +V    + +++       
Sbjct: 3  ISNNISSIGAHQTMLNTTANNVANVNTDGFVPKDTRMSNDSNSVRATIRETDSNGSAKSQ 62


>gi|323527715|ref|YP_004229868.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1001]
 gi|323384717|gb|ADX56808.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1001]
          Length = 141

 Score = 36.9 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 2  SLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTTISPENV 50
          SL+ +F  A +  +  SQ+      N+ NA          Y  +  +  ++P   
Sbjct: 3  SLMNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYRAKQVVFAVAPLGG 57


>gi|301299205|ref|ZP_07205492.1| YhgE/Pip C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853165|gb|EFK80762.1| YhgE/Pip C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1012

 Score = 36.9 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/380 (8%), Positives = 97/380 (25%), Gaps = 7/380 (1%)

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNA 131
           +      L  S   +K+ ++A    +   ++ +      L++   ++         +  +
Sbjct: 419 AMQAITTLQSSMSGMKDELAAVQSSSTELSNKLG---SDLKTAGSSVQGSSANIQAVLGS 475

Query: 132 EEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
             +        +   +    A   I    +   +  +++  VN  +        +     
Sbjct: 476 SNLTDADKQKLQAALQQNQAAGNAISDAGTTAGQIKAQMDGVNAKLSGLQGQLSNLSAMS 535

Query: 192 DQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNP 251
           D+       ++ I      ++ N D +   +   T  +   + +     +     ++   
Sbjct: 536 DKLTNAASVLNRINIDPNELKGNADKLQELAKNVTTLQEATKALAKGSSDLNDGVNKYTA 595

Query: 252 IFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNS 311
                +  ++            A      +     +N+L E+    +   +        +
Sbjct: 596 GVTSALNGANQLTDQNGVLNSGASQLYAGTS--ELKNELPELVTG-VTKLNNGAVALVAN 652

Query: 312 ENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGY 371
                   A     +     Q  + T  VN             G ++ +       +   
Sbjct: 653 NGKILSGSAQLAGGIGQMNAQIPALTSGVNQLANGGNQLASGLGQMNAQIPALTSGVNQL 712

Query: 372 PDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNH 431
            +  N       +     P      N  L    +       +    ++ +   +  +   
Sbjct: 713 ANGGNQLAGGLGQLNAQVPTLTNGVNQ-LASGTQQLAANSGQLIDGANKISEGNGTLAKS 771

Query: 432 ISESYSNTVGVNLQEELSFL 451
           +S         NL    + +
Sbjct: 772 LSAGAKEVNSQNLNSANANM 791


>gi|116694216|ref|YP_728427.1| flagellar basal body rod protein FlgB [Ralstonia eutropha H16]
 gi|113528715|emb|CAJ95062.1| flagellar basal body protein [Ralstonia eutropha H16]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 12 NICNNASQQFA-------SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
                 +  +        I  NI +AD   Y  RD   + +         R+E  ++  
Sbjct: 7  AALRFQQEALSLRNQRQSVIASNIAHADTPGYKARDFDFSSTLAQSVERGHRNEGMSLST 66

Query: 65 KVLH 68
            + 
Sbjct: 67 TSVR 70


>gi|163939549|ref|YP_001644433.1| flagellar basal body rod protein FlgB [Bacillus
          weihenstephanensis KBAB4]
 gi|163861746|gb|ABY42805.1| flagellar basal-body rod protein [Bacillus weihenstephanensis
          KBAB4]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|307823532|ref|ZP_07653761.1| flagellar basal-body rod protein FlgF [Methylobacter tundripaludum
           SV96]
 gi|307735517|gb|EFO06365.1| flagellar basal-body rod protein FlgF [Methylobacter tundripaludum
           SV96]
          Length = 246

 Score = 36.9 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/105 (5%), Positives = 22/105 (20%), Gaps = 10/105 (9%)

Query: 3   LLAVFNKAQNICNNASQQFASIVR--NIENADNKNYV------RRDTMTTISPENVTVVT 54
           +      A +         A      N+ N     +       R   ++           
Sbjct: 1   MDRSLYIAMSG--AKQTLLAQTANANNLANTQTSGFKSDLEQFRSRPVSGAGFPTRVYAM 58

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                 ++    +      +      + + A++     + +    
Sbjct: 59  NEKPGVDLSTGAMQTTGGDLDVAINGEGYLAVQGADGKEAYTRAG 103


>gi|291224653|ref|XP_002732318.1| PREDICTED: neurogenic locus notch homolog protein 2-like
            [Saccoglossus kowalevskii]
          Length = 3948

 Score = 36.9 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 40/409 (9%), Positives = 102/409 (24%), Gaps = 6/409 (1%)

Query: 1    MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
            M+  +           AS   A+    +  A +         ++      + +T  S   
Sbjct: 2229 MATSSALETTSTPLATASSYMATASSYMATASSY-----MATSSALETTSSPLTTASSYM 2283

Query: 61   NMFDKVLHAHSSAIGQQRL-LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLS 119
                  L   SS +      L++  +     S+     +SP    S   ++  S+ + +S
Sbjct: 2284 ETTSSFLETTSSPLETTSSPLETTSSSLATASSYMETTSSPLATASSYMETTSSFLETIS 2343

Query: 120  EDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKF 179
                  +             +S         +         S+     S       ++  
Sbjct: 2344 SPSATASSYMETTSSFFETTSSPLATASSYMETTSSAFETTSSPMATASSYMATTSSVLE 2403

Query: 180  KTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEK 239
             T+S         +      + +     +          V  +  + L  +     +   
Sbjct: 2404 TTSSPLATASNYMETTSSAFETTSSPLATASSYMATTSSVLETTSSPLATSSSYMASTSS 2463

Query: 240  MNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIG 299
                T +  ++   +          S+       +L    + +           +     
Sbjct: 2464 ALETTSSYMASTSSVLETSSLLAIVSSPLATTGPSLSITSNPLAKTTDLSSVLGSFTTTT 2523

Query: 300  SFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSK 359
            +    D              A     + +   +  + +        +    +     V  
Sbjct: 2524 AIPIVDTSILQPSEGSITVTASPASIIASISTRSSAVSEPSISPTVTLEPSISTQLEVKS 2583

Query: 360  KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408
              +  V        + + +  S  +  +  PV   +T VTL+  + +SI
Sbjct: 2584 STVPQVVTTESLQSITSIFQTSSVEVSLSSPVISPSTTVTLITSSASSI 2632


>gi|148546703|ref|YP_001266805.1| flagellar basal body rod protein FlgB [Pseudomonas putida F1]
 gi|148510761|gb|ABQ77621.1| flagellar basal-body rod protein FlgB [Pseudomonas putida F1]
 gi|313497758|gb|ADR59124.1| FlgB [Pseudomonas putida BIRD-1]
          Length = 136

 Score = 36.9 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD   +  
Sbjct: 1  MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFSSV 48


>gi|104782846|ref|YP_609344.1| flagellar basal body rod protein FlgB [Pseudomonas entomophila
          L48]
 gi|95111833|emb|CAK16557.1| flagellar biosynthesis; cell-proximal portion of basal-body rod
          [Pseudomonas entomophila L48]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD   +  
Sbjct: 1  MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFSSV 48


>gi|27363708|ref|NP_759236.1| flagellar basal body rod protein FlgB [Vibrio vulnificus CMCP6]
 gi|37679144|ref|NP_933753.1| flagellar basal body rod protein FlgB [Vibrio vulnificus YJ016]
 gi|320157112|ref|YP_004189491.1| flagellar basal-body rod protein FlgB [Vibrio vulnificus
          MO6-24/O]
 gi|27359824|gb|AAO08763.1| flagellar basal-body rod protein FlgB [Vibrio vulnificus CMCP6]
 gi|37197886|dbj|BAC93724.1| flagellar basal body protein FlgB [Vibrio vulnificus YJ016]
 gi|319932424|gb|ADV87288.1| flagellar basal-body rod protein FlgB [Vibrio vulnificus
          MO6-24/O]
          Length = 131

 Score = 36.9 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 4/42 (9%)

Query: 19 QQFASIVRNIENADNKNYVRRDTMTT----ISPENVTVVTQR 56
          +    I  NI  A+   Y  R    +     +    ++   R
Sbjct: 21 RNAEVISTNIAQANTPGYKARGLDFSKELQAASSGASIGLSR 62


>gi|322515827|ref|ZP_08068771.1| membrane protein [Streptococcus vestibularis ATCC 49124]
 gi|322125713|gb|EFX97035.1| membrane protein [Streptococcus vestibularis ATCC 49124]
          Length = 789

 Score = 36.9 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 43/448 (9%), Positives = 112/448 (25%), Gaps = 9/448 (2%)

Query: 15  NNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAI 74
           +  S+   ++ +NI  +     V +                             + + + 
Sbjct: 144 SAMSKLKDTVSKNIT-STYVGAVFKSMSQLQGGMGTAANGASQLYAGAGALQSGSQTLSN 202

Query: 75  GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL----SEDILGKTVIDN 130
           G   L  S + L   +       ++ T  +S L  +L   + N     S      +  + 
Sbjct: 203 GLGTLAGSTQTLATGVDTLSSGASAYTSGVSTLSGALSQLNANSEAVNSAAGQFVSGAEA 262

Query: 131 AEEVVQNFNTSAREVQKIRADAD----KEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
              +V   ++ +  + ++         ++ +L   +         + N        S   
Sbjct: 263 MNTLVTGADSLSTALSQMATATSLSEEQQAQLSTLSTNLTDLNTAIQNLNTAVSNTSLPS 322

Query: 187 AHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVT 246
                      +      I  +             +D   +  T           +   +
Sbjct: 323 GTSTTSVDTSSIATYLSNISSAASSIATASATDKANDLAAVQGTAAYQSLTADQQAEITS 382

Query: 247 SESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306
           + SN         S+            + L    +      + L  +   + G  S  + 
Sbjct: 383 AISNAGSTASSYASTIASDVSSMSTALSSLTGTTTTSSGDSSSLASLQTSISGIASSANA 442

Query: 307 IAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVK 366
           +   + +      A+        + Q     I V     +  S L  G S     L    
Sbjct: 443 LLPVASSTVSSMQANIANVNSVLVNQLSPGAIQVASGVSTAQSTLATGASALSTGLSTYT 502

Query: 367 NLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
                        D+ + + +       +    L   A+          +    L     
Sbjct: 503 GAVSTIASGAQTLDANSSSLMTGFSTLQSGTSALNTGAQQLATGGNTLTNGLTSLSTNLS 562

Query: 427 VVFNHISESYSNTVGVNLQEELSFLIKV 454
            + N ++++      V++  + + ++  
Sbjct: 563 TLSNSLNKANQQLSLVSVNSDNAKMVSA 590


>gi|322379374|ref|ZP_08053745.1| Putative vacuolating cytotoxin [Helicobacter suis HS1]
 gi|321148192|gb|EFX42721.1| Putative vacuolating cytotoxin [Helicobacter suis HS1]
          Length = 3002

 Score = 36.9 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 35/381 (9%), Positives = 86/381 (22%), Gaps = 13/381 (3%)

Query: 27  NIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL 86
           NI N +  +Y  R    T + ++V++       +N      +  ++A            +
Sbjct: 159 NISNVNMDSYKGRQFTDTWNAQSVSISGNLQVGQNHITINANHGTTANNATINADQGNGI 218

Query: 87  KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
             +         +             +   NL  + +    +   +    +  T    + 
Sbjct: 219 LNINDKTSESFTN--------TTFKGTGQINLQSNNITFKNVTFNDSNTGSHVTDNGTLT 270

Query: 147 KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
               +   +       +    +     N             +   +   ++    ++ I 
Sbjct: 271 LEGTETFAQ---NSPLINLGANVTIQANTIFNITEDLTKTTNGAYNLDTLVSTSGNKSIN 327

Query: 207 ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSA 266
            S+   +  D++ Y     +LF     +       S                    +   
Sbjct: 328 DSSYASHLWDLIRYQGQTGSLFNGQLSNGTTLSNPSSGNGIYYVKYTFGNGDWDILKEDF 387

Query: 267 VPKGKIKALLQI--RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIK 324
                   L         +    + ++      +G  S        ++        +   
Sbjct: 388 ENNSLSAQLEAYAKNQGDIWSTIHNINSTWNFNVGEGSAYINPGNGTDQAWAQRDKNFKV 447

Query: 325 DLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384
            LDN     +           S        G        N     GY          +  
Sbjct: 448 TLDNGSGGTLILGNSTETPSSSGKILFGGTGGNPFALNGNYGGDLGYMTGEFDAGKIYLT 507

Query: 385 NFIFDPVAGINTNVTLLEYAR 405
             I    +  + N T + Y  
Sbjct: 508 GTIESGNSFHDGNGTNISYNA 528


>gi|293395584|ref|ZP_06639867.1| flagellar basal-body rod protein FlgF [Serratia odorifera DSM 4582]
 gi|291421903|gb|EFE95149.1| flagellar basal-body rod protein FlgF [Serratia odorifera DSM 4582]
          Length = 251

 Score = 36.9 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 9/139 (6%)

Query: 12  NICNNASQQFA---SIVRNIENADNKNYVRRDTMTTISP------ENVTVVTQRSENKNM 62
                A Q          N+ NA    +  +       P      +  T+VT  +   +M
Sbjct: 7   TAMGAARQTLDQQAITANNLANASTPGFRAQLAALRAVPVDGPSLQTRTLVTASTPGADM 66

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
               L+     +        F AL++   ++ +  N      S  + +++          
Sbjct: 67  SQGALNYTGRPLDVALQQDGFLALQQADGSEAYTRNGNIQISSTGQLTVQGLPLMGDGGP 126

Query: 123 LGKTVIDNAEEVVQNFNTS 141
           +                ++
Sbjct: 127 IEVPPQAEITIAADGTISA 145


>gi|302872943|ref|YP_003841576.1| hypothetical protein Clocel_0022 [Clostridium cellulovorans 743B]
 gi|307686542|ref|ZP_07628988.1| hypothetical protein Ccel74_00205 [Clostridium cellulovorans 743B]
 gi|302575800|gb|ADL49812.1| hypothetical protein Clocel_0022 [Clostridium cellulovorans 743B]
          Length = 1975

 Score = 36.9 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 75/272 (27%), Gaps = 18/272 (6%)

Query: 6   VFNKAQNICNNASQQFASIVRNIENAD-----NKN--YVR-RDTMTTISPENVTVVTQRS 57
             +   +  +  S    ++  NI N +          +    ++       +V  +   S
Sbjct: 328 SLSGGSSAFSVNS---DTVSLNITNVNDAPVLTTGHNFTSISESDINNPGNSVADIAGTS 384

Query: 58  ENKNMFDK----VLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113
                 +      +++ ++  G  +      +    +   +  N+     I ++R     
Sbjct: 385 ITDVDINSAKGIAINSSNNGNGVWQYSIDGGSNWTNIDVVNSANSLLLRDIDRVRFVPNG 444

Query: 114 YSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLR--RFLSELT 171
                +               ++  + +        + A     + +SN+     L+ + 
Sbjct: 445 MKGTTASITYRAWDTTTGTYGIKQSSAAYGG-STAFSSATNSASISVSNINYPPTLTSVN 503

Query: 172 VVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETV 231
            +N   K  T +  D     D+ D     IS  I          +  +  + G T     
Sbjct: 504 DLNGVDKTNTITYADLSAAADEVDSDGDTISFRIEALNTGTLRKNGNLSVTAGVTTIGPG 563

Query: 232 PRDINFEKMNSYTVTSESNPIFIDGVVVSSNQ 263
                    N+  + +       DG V S+  
Sbjct: 564 ESLSWTVPNNTNGLLNAFTIKAYDGTVASNTA 595


>gi|32490788|ref|NP_871042.1| hypothetical protein WGLp039 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165994|dbj|BAC24185.1| flgC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 133

 Score = 36.9 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
             VN+  E+   I   +SY  + ++I     M+
Sbjct: 93  SNVNMISEMINTISSSRSYQANVEVINTARSMI 125


>gi|152985328|ref|YP_001349653.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa
          PA7]
 gi|150960486|gb|ABR82511.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa
          PA7]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLL--AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+             +  +Q+   +  N+ NAD  NY  RD      
Sbjct: 1  MSISFDRALGIHPQALSFRAQRAEVLANNLANADTPNYKARDLDFGAV 48


>gi|121997318|ref|YP_001002105.1| flagellar basal-body rod protein FlgF [Halorhodospira halophila
           SL1]
 gi|121588723|gb|ABM61303.1| flagellar basal-body rod protein FlgF [Halorhodospira halophila
           SL1]
          Length = 246

 Score = 36.9 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/190 (8%), Positives = 44/190 (23%), Gaps = 12/190 (6%)

Query: 285 IFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQ- 343
             +   +E+      +    +    + +          ++  D              P+ 
Sbjct: 52  ATRAYAEELRAGTDFNPGPIETTGRDLDVAIQDEGWFVVQAPDGDEAYTRRGDFQTTPEG 111

Query: 344 --YRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVT-L 400
                +   +               ++A    +              D +  +N + T L
Sbjct: 112 LLTTGDGHMVMGEAGPISIPPDTKVDIADDGVITATPQGGAGAPIELDRLRLVNPDPTQL 171

Query: 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNI 460
           ++     I                   V             VN+ E L  +I   + +  
Sbjct: 172 VKGEDGLIRH----AEGEPAADDAQVRVRG----GALEGSNVNMAESLVNMIDHARQFET 223

Query: 461 SNKLIMFTDK 470
             K++   ++
Sbjct: 224 HIKMLTAAEE 233


>gi|75761145|ref|ZP_00741137.1| Flagellar basal-body rod protein flgB [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228900325|ref|ZP_04064555.1| Flagellar basal-body rod protein [Bacillus thuringiensis IBL
          4222]
 gi|74491373|gb|EAO54597.1| Flagellar basal-body rod protein flgB [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228859360|gb|EEN03790.1| Flagellar basal-body rod protein [Bacillus thuringiensis IBL
          4222]
          Length = 138

 Score = 36.9 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|238758109|ref|ZP_04619289.1| Flagellar basal-body rod protein flgF [Yersinia aldovae ATCC 35236]
 gi|238703647|gb|EEP96184.1| Flagellar basal-body rod protein flgF [Yersinia aldovae ATCC 35236]
          Length = 251

 Score = 36.9 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 34/155 (21%), Gaps = 3/155 (1%)

Query: 12  NICNNASQQF---ASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                A Q     A    N+ N     +  + T     P +   +  R+        V  
Sbjct: 7   TAMGAARQSLEKQAVTANNLANVATPGFRAQLTAMRAIPIDGPSLMTRTMVAASTPGVNI 66

Query: 69  AHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +     R L         ++               ++ S           ++G    
Sbjct: 67  SQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQISSNGQMTVQGYPLMGDNGP 126

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
                       +   +  + A        ++  +
Sbjct: 127 IEVPPQAAVTIAADGTISALNAGDSPNTIAQLGQI 161


>gi|89068701|ref|ZP_01156087.1| flagellar basal body rod protein [Oceanicola granulosus HTCC2516]
 gi|89045664|gb|EAR51726.1| flagellar basal body rod protein [Oceanicola granulosus HTCC2516]
          Length = 131

 Score = 36.9 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 22 ASIVRNIENADNKNYVRRDTM-TTISPENVTVVTQRSENK 60
            +  NI NAD   Y  RD              +  + + 
Sbjct: 24 QVVSENIANADTPGYRARDVSPFESMVTRSDAGSGPAVSN 63


>gi|196039148|ref|ZP_03106455.1| flagellar basal-body rod protein FlgB [Bacillus cereus
          NVH0597-99]
 gi|196030293|gb|EDX68893.1| flagellar basal-body rod protein FlgB [Bacillus cereus
          NVH0597-99]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|218896676|ref|YP_002445087.1| flagellar basal-body rod protein FlgB [Bacillus cereus G9842]
 gi|218543629|gb|ACK96023.1| flagellar basal-body rod protein FlgB [Bacillus cereus G9842]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|196045109|ref|ZP_03112342.1| flagellar basal-body rod protein FlgB [Bacillus cereus 03BB108]
 gi|218902858|ref|YP_002450692.1| flagellar basal-body rod protein FlgB [Bacillus cereus AH820]
 gi|228945346|ref|ZP_04107701.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|300117338|ref|ZP_07055128.1| flagellar basal body rod protein FlgB [Bacillus cereus SJ1]
 gi|301053280|ref|YP_003791491.1| flagellar basal body rod protein [Bacillus anthracis CI]
 gi|196024111|gb|EDX62785.1| flagellar basal-body rod protein FlgB [Bacillus cereus 03BB108]
 gi|218535408|gb|ACK87806.1| flagellar basal-body rod protein FlgB [Bacillus cereus AH820]
 gi|228814318|gb|EEM60584.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|298725173|gb|EFI65825.1| flagellar basal body rod protein FlgB [Bacillus cereus SJ1]
 gi|300375449|gb|ADK04353.1| flagellar basal body rod protein [Bacillus cereus biovar
          anthracis str. CI]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|146305756|ref|YP_001186221.1| hemolysin-type calcium-binding region [Pseudomonas mendocina ymp]
 gi|145573957|gb|ABP83489.1| Hemolysin-type calcium-binding region [Pseudomonas mendocina ymp]
          Length = 1764

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 34/384 (8%), Positives = 77/384 (20%), Gaps = 21/384 (5%)

Query: 36  YVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQ--SFEALKEMMSAD 93
           Y R         +   +     E    + +   A     GQ   L         + +SA 
Sbjct: 614 YERGSLSVKAMGDGFILGWGNYEGDAFYAQRYDAAGQPTGQAIELSRVDTARNVDDISAT 673

Query: 94  DHYNNSPTHYISKL--------RDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145
              + S     ++                          +    +     Q    +   +
Sbjct: 674 QLKDGSFVLAWTEEPPDQWIPDASGWGGEYVESEGQAYIQLFNADGSTKGQPIALATGNL 733

Query: 146 QKIRADA----DKEIELEISNLRRF-----LSELTVVNDAIKFKTASKHDAHDFLDQRDV 196
           Q          +    +    +        +       D      A + +     DQ D 
Sbjct: 734 QAFEPSVSALPNGGFVVVWEYVNDAKESEEIYLQRFKADGTPDGKAIQVNTSTKGDQGDP 793

Query: 197 LLQKISEIIGISTIVRNNNDMVVY--TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFI 254
            +  +++   + T  R  +D   Y      T + E       F +  S           +
Sbjct: 794 EVVTLADGSYVVTWTRETHDDFKYKDDMGNTVVEERTVDTHIFMQRFSADGKKLGGETQV 853

Query: 255 DGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314
           +      N  +         ++    S      N    +   +      K        + 
Sbjct: 854 NSTPGFYNDPAITALEGGGYVITYATSDERELYNGTSRLYAQIYDKNGAKVGDELVIASS 913

Query: 315 PGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDL 374
           P       +    +       E       Y      +      +      +    G   L
Sbjct: 914 PNQDFFPSVTASADGGFLVTWEASERTANYGGGSGDIYVKRFDANGNSLTLSGDDGDNTL 973

Query: 375 INHYCDSFNKNFIFDPVAGINTNV 398
                   + +           + 
Sbjct: 974 TWTGSSGVSLDGGAGNDTLTGGDG 997


>gi|117924090|ref|YP_864707.1| filamentous haemagglutinin outer membrane protein [Magnetococcus sp.
            MC-1]
 gi|117607846|gb|ABK43301.1| filamentous hemagglutinin family outer membrane protein
            [Magnetococcus sp. MC-1]
          Length = 3132

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 32/391 (8%), Positives = 84/391 (21%), Gaps = 6/391 (1%)

Query: 30   NADNKNYVR---RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEAL 86
            NA    +            +   V + T  +   +       A + A             
Sbjct: 1150 NATTGAFSSTGVGSVTFENTGGGVAIGTVTATGGSATITASTAITDATSAITADTVVLTA 1209

Query: 87   KEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQ 146
               + A      S    ++ L  +   Y++      +    +   + +   F T+   + 
Sbjct: 1210 GTSIGASGSTIKSTATTLTYLASAGSIYAQESDGATVNAKAVGTGKNI--EFATTTGNLT 1267

Query: 147  KIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIG 206
                 A   + L  +         +          ++           + +   +S    
Sbjct: 1268 IGTISAKGSVTLTATAGSVLSGGTSSSATGATVVLSAGTAIGASGASVNTVAANLSATAS 1327

Query: 207  ISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGS 265
               +  +N   V  T+   T       +     +N  T   ++  +   G +       +
Sbjct: 1328 AGGVYLSNAGDVTLTTAVATGAGFQLSNTGALVLNGVTAAGQAVSLTASGAITDGNGATN 1387

Query: 266  AVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKD 325
             +    +  +     S            +     +          S  +          D
Sbjct: 1388 NISAESLTLVGLSIGSTATNGAVDTQVNSVTATTTSGGIYLNELGSGGLTITAATAVGSD 1447

Query: 326  LDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKN 385
             +  +       + V      + + +  G         N            +  +    +
Sbjct: 1448 ANVSITGAGDIALGVITAKGDDVTLVSAGKITDNNGAANNVTADILNVTGPNGVEGLETS 1507

Query: 386  FIFDPVAGINTNVTLLEYARNSIGWLEKNRS 416
                   G    V     A         + S
Sbjct: 1508 ITQLSSTGSTDIVNAGAMAITKASLEGGSSS 1538


>gi|83720527|ref|YP_440802.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis
           E264]
 gi|167617586|ref|ZP_02386217.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis
           Bt4]
 gi|257140547|ref|ZP_05588809.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis
           E264]
 gi|83654352|gb|ABC38415.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis
           E264]
          Length = 253

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/142 (7%), Positives = 31/142 (21%), Gaps = 19/142 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-------MTTISPENVTVVTQ 55
           +  +   A      + +Q + +  N+ NA    +  +                NV   T 
Sbjct: 1   MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60

Query: 56  RSEN------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           R+         +     +    + +        + ++           +        L  
Sbjct: 61  RTYTLSSTPGADFAPGPIERTGNPLDVAIQGPGWLSVM------LPDGSEAYTRAGNLHV 114

Query: 110 SLESYSKNLSEDILGKTVIDNA 131
                    +   +       A
Sbjct: 115 DQNGQLVTANNLPVVGNGGPLA 136


>gi|167579489|ref|ZP_02372363.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis
           TXDOH]
          Length = 253

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/142 (7%), Positives = 31/142 (21%), Gaps = 19/142 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-------MTTISPENVTVVTQ 55
           +  +   A      + +Q + +  N+ NA    +  +                NV   T 
Sbjct: 1   MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60

Query: 56  RSEN------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           R+         +     +    + +        + ++           +        L  
Sbjct: 61  RTYTLSSTPGADFAPGPIERTGNPLDVAIQGPGWLSVM------LPDGSEAYTRAGNLHV 114

Query: 110 SLESYSKNLSEDILGKTVIDNA 131
                    +   +       A
Sbjct: 115 DQNGQLVTANNLPVVGNGGPLA 136


>gi|83747656|ref|ZP_00944692.1| FlgC [Ralstonia solanacearum UW551]
 gi|300696911|ref|YP_003747572.1| FlgC: flagellar basal-body rod protein [Ralstonia solanacearum
          CFBP2957]
 gi|83725708|gb|EAP72850.1| FlgC [Ralstonia solanacearum UW551]
 gi|299073635|emb|CBJ53155.1| FlgC: Flagellar basal-body rod protein [Ralstonia solanacearum
          CFBP2957]
          Length = 135

 Score = 36.9 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA 31
          MSL  V + A +     S++   +  N+ NA
Sbjct: 1  MSLFKVMDVAGSALTAQSKRMNVVASNLANA 31


>gi|237746492|ref|ZP_04576972.1| outer membrane autotransporter barrel domain-containing protein
           [Oxalobacter formigenes HOxBLS]
 gi|229377843|gb|EEO27934.1| outer membrane autotransporter barrel domain-containing protein
           [Oxalobacter formigenes HOxBLS]
          Length = 1414

 Score = 36.9 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 33/407 (8%), Positives = 93/407 (22%), Gaps = 2/407 (0%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
               T I+    +V         +        S+       + +  + + +       + 
Sbjct: 179 SAVDTIINGGGQSVDRGAVAINTVISGGTQHISNNGIASGTILNSGSEQTVDDGGRVVST 238

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
              +    +     + S         + V      V    N+S + +Q     ++  +  
Sbjct: 239 IFNNGSQTIWGG--TVSDTTLNSGSEQIVYSGGIVVGTILNSSVQNIQVNARVSNTILNS 296

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
            + N+    S ++ V  +   +  S + +          +Q +S    I   +  +   V
Sbjct: 297 SVQNISAIGSAISTVLHSGSVQNISANGSAISTVLHSGSVQNVSGYHAIVDGLTFSGGGV 356

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
               D  T+          + +N       +         V+    +         +  +
Sbjct: 357 QNILDSATVSGITVNSSGTQNVNDGGSAVSTIVDDTGIQNVNDGGTATGTTVNSGGVQHV 416

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
            D  +           + +    S       ++              +            
Sbjct: 417 NDGGIASGTIVNSSGTQNVNDGGSAVSTTVDDTGTQNVNDGGTATDTVLKSGGVQNVSGS 476

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                  +         +          N +G  ++ +              +  +N   
Sbjct: 477 RAIVDDLTFDGGGVQNVNSGATVSGITVNSSGTQNVNDGGSAVGTIVSSNTSIQNVNDGG 536

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
           T         G    N S +    +           S +   G+++ 
Sbjct: 537 TATGTLLYLGGVQNVNGSGAVVDSITFDGGGTQNINSGATVSGLSID 583


>gi|289208111|ref|YP_003460177.1| flagellar basal-body rod protein FlgB [Thioalkalivibrio sp.
          K90mix]
 gi|288943742|gb|ADC71441.1| flagellar basal-body rod protein FlgB [Thioalkalivibrio sp.
          K90mix]
          Length = 136

 Score = 36.9 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
          MSL             N  +++   +  NI NAD  NY  RD       +      
Sbjct: 1  MSLSLDKAMGILPEAVNVRAKRMELLASNIANADTPNYKARDIDFRSVLQAAAGEG 56


>gi|217077496|ref|YP_002335214.1| flagellar basal-body rod protein FlgB [Thermosipho africanus
          TCF52B]
 gi|217037351|gb|ACJ75873.1| flagellar basal-body rod protein FlgB [Thermosipho africanus
          TCF52B]
          Length = 127

 Score = 36.9 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 4  LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
           + F+  +   + A ++     +NI NA+  NY R+  +    
Sbjct: 3  NSNFSTLKAAMDVALKRQEIHSQNIANAETPNYKRKYIVFEEL 45


>gi|86157822|ref|YP_464607.1| flagellar basal-body rod protein FlgC [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|220917656|ref|YP_002492960.1| flagellar basal-body rod protein FlgC [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774333|gb|ABC81170.1| flagellar basal-body rod protein FlgC [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|219955510|gb|ACL65894.1| flagellar basal-body rod protein FlgC [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 140

 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK-N-----YVRRDTMTTISP 47
          M  L+  N + +       +      N+ NA+         Y R D +    P
Sbjct: 1  MDFLSALNVSASGLAAERVRVNLAASNLANAETTRGPDGQPYRRLDPVLEAVP 53



 Score = 36.5 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 447 ELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
           E+  L+  +++Y  +   +     M Q  LE  +
Sbjct: 107 EIVNLMSAQKAYEANATAVDTLKTMAQRALEIAR 140


>gi|53717915|ref|YP_106901.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           K96243]
 gi|53724566|ref|YP_104799.1| flagellar basal body rod protein FlgF [Burkholderia mallei ATCC
           23344]
 gi|67641539|ref|ZP_00440316.1| flagellar basal-body rod protein FlgF [Burkholderia mallei GB8
           horse 4]
 gi|121600078|ref|YP_994292.1| flagellar basal body rod protein FlgF [Burkholderia mallei SAVP1]
 gi|124385734|ref|YP_001028059.1| flagellar basal body rod protein FlgF [Burkholderia mallei NCTC
           10229]
 gi|126438677|ref|YP_001057323.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           668]
 gi|126449756|ref|YP_001082866.1| flagellar basal body rod protein FlgF [Burkholderia mallei NCTC
           10247]
 gi|134283591|ref|ZP_01770290.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           305]
 gi|167001538|ref|ZP_02267333.1| flagellar basal-body rod protein FlgF [Burkholderia mallei PRL-20]
 gi|167717661|ref|ZP_02400897.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           DM98]
 gi|167813803|ref|ZP_02445483.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           91]
 gi|167843909|ref|ZP_02469417.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           B7210]
 gi|167892411|ref|ZP_02479813.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           7894]
 gi|167900909|ref|ZP_02488114.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           NCTC 13177]
 gi|167917165|ref|ZP_02504256.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei
           BCC215]
 gi|217425035|ref|ZP_03456531.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           576]
 gi|237810462|ref|YP_002894913.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           MSHR346]
 gi|254174652|ref|ZP_04881313.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC
           10399]
 gi|254182139|ref|ZP_04888736.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1655]
 gi|254188069|ref|ZP_04894581.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254201897|ref|ZP_04908261.1| flagellar basal-body rod protein FlgF [Burkholderia mallei FMH]
 gi|254207231|ref|ZP_04913582.1| flagellar basal-body rod protein FlgF [Burkholderia mallei JHU]
 gi|254359733|ref|ZP_04976004.1| flagellar basal-body rod protein FlgF [Burkholderia mallei
           2002721280]
 gi|52208329|emb|CAH34262.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243]
 gi|52427989|gb|AAU48582.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC
           23344]
 gi|121228888|gb|ABM51406.1| flagellar basal-body rod protein FlgF [Burkholderia mallei SAVP1]
 gi|124293754|gb|ABN03023.1| flagellar basal-body rod protein FlgF [Burkholderia mallei NCTC
           10229]
 gi|126218170|gb|ABN81676.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           668]
 gi|126242626|gb|ABO05719.1| flagellar basal-body rod protein FlgF [Burkholderia mallei NCTC
           10247]
 gi|134245000|gb|EBA45095.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           305]
 gi|147747791|gb|EDK54867.1| flagellar basal-body rod protein FlgF [Burkholderia mallei FMH]
 gi|147752773|gb|EDK59839.1| flagellar basal-body rod protein FlgF [Burkholderia mallei JHU]
 gi|148028947|gb|EDK86879.1| flagellar basal-body rod protein FlgF [Burkholderia mallei
           2002721280]
 gi|157935749|gb|EDO91419.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695697|gb|EDP85667.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC
           10399]
 gi|184212677|gb|EDU09720.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           1655]
 gi|217392055|gb|EEC32081.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           576]
 gi|237502787|gb|ACQ95105.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei
           MSHR346]
 gi|238522490|gb|EEP85934.1| flagellar basal-body rod protein FlgF [Burkholderia mallei GB8
           horse 4]
 gi|243062739|gb|EES44925.1| flagellar basal-body rod protein FlgF [Burkholderia mallei PRL-20]
          Length = 253

 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/142 (7%), Positives = 30/142 (21%), Gaps = 19/142 (13%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-------MTTISPENVTVVTQ 55
           +  +   A      + +Q + +  N+ NA    +  +                NV   T 
Sbjct: 1   MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60

Query: 56  RSEN------KNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRD 109
           R+         +     +    + +        + ++                    L  
Sbjct: 61  RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVM------LPDGTEAYTRAGNLHV 114

Query: 110 SLESYSKNLSEDILGKTVIDNA 131
                    +   +       A
Sbjct: 115 DQNGQLVTANNLPVVGNGGPLA 136


>gi|296531769|ref|ZP_06894591.1| flagellar basal-body rod protein FlgC [Roseomonas cervicalis ATCC
          49957]
 gi|296267908|gb|EFH13713.1| flagellar basal-body rod protein FlgC [Roseomonas cervicalis ATCC
          49957]
          Length = 146

 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNK 34
          L      A +  N  + +      NI NA + 
Sbjct: 13 LTQAMATAASGMNTQATRMRVSAENIANASST 44


>gi|94312666|ref|YP_585875.1| flagellar basal body rod protein FlgB [Cupriavidus metallidurans
          CH34]
 gi|93356518|gb|ABF10606.1| flagellar basal body rod protein FlgB [Cupriavidus metallidurans
          CH34]
 gi|222834412|gb|EEE72889.1| predicted protein [Populus trichocarpa]
          Length = 134

 Score = 36.9 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 13 ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLH 68
                Q  + I  NI +AD   Y  RD     +        QRSE  ++    + 
Sbjct: 16 SLRTQRQ--SVIASNIAHADTPGYKARDFDFASTLAQSVERGQRSEGTSLSTTSVR 69


>gi|325567513|ref|ZP_08144180.1| flagellar basal-body rod protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158946|gb|EGC71092.1| flagellar basal-body rod protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 233

 Score = 36.9 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 413 KNRSDSHDLHMKSQVVFNH--ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
                ++     +    N   I +       V + +E+  +I+  + +  + K +  T++
Sbjct: 162 TTAGQNYVTSNAAGTTVNAPVIQQGALEQANVAVADEMVAMIQTSREFEANQKALSSTNQ 221

Query: 471 MLQTLLE 477
            LQ  + 
Sbjct: 222 TLQKAVN 228


>gi|307731362|ref|YP_003908586.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1003]
 gi|307585897|gb|ADN59295.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1003]
          Length = 252

 Score = 36.9 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 10/137 (7%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  +   A +    A +Q A +  N+ NA    +  +       P   +     S N N 
Sbjct: 1   MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPM--SFGDGSSINDNT 58

Query: 63  FDKVLHAHSSAIGQ-----QRLLQSFEALKEM---MSADDHYNNSPTHYISKLRDSLESY 114
               + + +          Q+     +   E    ++               L       
Sbjct: 59  TRTFVLSSTPGADYTPGPIQQTGNPLDVAIEGPGWLAVQTADGGEAYTRAGNLHIDQNGQ 118

Query: 115 SKNLSEDILGKTVIDNA 131
             N +  ++       A
Sbjct: 119 LVNATNQVVLGNGGPMA 135


>gi|160944356|ref|ZP_02091584.1| hypothetical protein FAEPRAM212_01866 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444138|gb|EDP21142.1| hypothetical protein FAEPRAM212_01866 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1270

 Score = 36.9 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 37/425 (8%), Positives = 85/425 (20%), Gaps = 27/425 (6%)

Query: 25  VRNIENADNK-----NYVR----RDTMTTISPE---NVTVVTQRSENKNMFDKVLHAH-- 70
             NI N  +                              V         +    ++    
Sbjct: 248 SNNISNVSSDTGGIAGRSSGLILSSANAGDVGYAHVGYNVGGIVGRTDGLISGCVNQGLV 307

Query: 71  SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKN-LSEDILGKTVID 129
                   +    E   E+   D    N     +  L   +   + +      L  T ++
Sbjct: 308 QGRKDVGGIAGQAEPYVELDL-DQSTINRLRTELDTLHTMVNGAADDMDGSTSLLNTDLN 366

Query: 130 NAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHD 189
                +     +AR +Q+   D   E+  E+      +S+     + +            
Sbjct: 367 TLNSQMDTAVQAARRLQEQGGDYFDEVADEVDRTGDLISDTFTRLEPVMDTGV------- 419

Query: 190 FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSES 249
             D  D +   + ++  ++  +              +       D            S+ 
Sbjct: 420 --DALDKMTTAVGQLKWVTAEMAAEMLTASTALAKASSGAHKASDALDSSKQGLEQISKG 477

Query: 250 NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309
               I  +    + G +     I                +       +  S      +  
Sbjct: 478 LDDLIASLPGKDDSGLSSAISTILGGYSSVSGDAVDDHIKTAISLLQVANSAMSILSLGS 537

Query: 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLA 369
                  L            L     +      Q       +    +     L N  NL 
Sbjct: 538 GMSGQMKLLTTGLGLLRSATLLADDGQLASAGKQVTRAVGNMAGLATQIGALLGNTANLV 597

Query: 370 GYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
                        + +     V     N  L +             S +  +      + 
Sbjct: 598 SEQGNPQMASALTSMSGALGNVGDQLGN--LEDILDKLSFNTGNISSGNASIQAGLDSLS 655

Query: 430 NHISE 434
           +   +
Sbjct: 656 DAAQD 660


>gi|90415317|ref|ZP_01223251.1| hypothetical protein GB2207_08376 [marine gamma proteobacterium
          HTCC2207]
 gi|90332640|gb|EAS47810.1| hypothetical protein GB2207_08376 [marine gamma proteobacterium
          HTCC2207]
          Length = 253

 Score = 36.9 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 8  NKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVT 54
            A +   + S   A+I   + N     + +      I+   V +  
Sbjct: 6  YTALSAMQSQSVARAAITNELANVSTVGFKKS---FQIASSAVKIDG 49


>gi|289670504|ref|ZP_06491579.1| flagellar basal body rod protein FlgC [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 135

 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MS L +F+ A +  +  S + ++I  N+ NAD
Sbjct: 1  MSNLPIFDVAGSALHAHSVRLSTIASNLANAD 32


>gi|163802606|ref|ZP_02196498.1| flagellar basal body protein [Vibrio sp. AND4]
 gi|159173689|gb|EDP58508.1| flagellar basal body protein [Vibrio sp. AND4]
          Length = 131

 Score = 36.9 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 4/42 (9%)

Query: 19 QQFASIVRNIENADNKNYVRRDTMT----TISPENVTVVTQR 56
          +    I  NI  A+   Y  R          +    ++   R
Sbjct: 21 RNAEVISTNIAQANTPGYKSRGLDFAKELQAATSGASIGLSR 62


>gi|302658282|ref|XP_003020847.1| hypothetical protein TRV_05073 [Trichophyton verrucosum HKI 0517]
 gi|291184713|gb|EFE40229.1| hypothetical protein TRV_05073 [Trichophyton verrucosum HKI 0517]
          Length = 1904

 Score = 36.9 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 31/391 (7%), Positives = 70/391 (17%), Gaps = 10/391 (2%)

Query: 43  TTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTH 102
            T +       TQ S   +       +   +               +  +        T 
Sbjct: 15  FTTTGGGFGSNTQTSAFGSSGFGTGTSGFGSTSNTGTGGG------IFGSKPSGGFGSTG 68

Query: 103 YISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI-- 160
             +       S S   +    G      A     +    A EV   +  A+         
Sbjct: 69  NQTGSIFGGTSTSSPATNTGTGFGATTAASGFGGSGTALAGEVPPSQGTANPTFSPFTEK 128

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                  S    ++    ++  S  +      ++       S   G              
Sbjct: 129 DPGSSNTSNYQSISFMTPYQKYSFEELRVADYEQGRRYGNASGQPGAFGSFSGFGQGSSG 188

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPK--GKIKALLQI 278
                                     +++     +                G+  +    
Sbjct: 189 FGTTAASSSPFGGSTTATSGFGTQNQTQNTGFGSNTSNPLFGATKPATGIFGQTSSTPST 248

Query: 279 RDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETI 338
                               G+ +    + GN++     F       L        + T 
Sbjct: 249 GFGTTGTTGGFGTSTTNAFGGTNTGGGGLFGNTQQKTTGFGTTATPTLGTGFGTQTNTTN 308

Query: 339 CVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNV 398
                     +     GS         +N A              +       +   T+ 
Sbjct: 309 SSPFGNTQTSTTFGQQGSSGFGSFGQNQNQAKPAFGGFGQTQPQQQTGGGLFGSTPATSG 368

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQVVF 429
           T      N+      +     +    +    
Sbjct: 369 TGSSLFGNNNQQQGSSIFGQQNQQTNTSGGL 399


>gi|82596421|ref|XP_726255.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481586|gb|EAA17820.1| nam7 protein [Plasmodium yoelii yoelii]
          Length = 1791

 Score = 36.9 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 44/407 (10%), Positives = 100/407 (24%), Gaps = 35/407 (8%)

Query: 26  RNIE--NADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSF 83
            NI   N +  +Y +       S  + +     + NK   +      S   G  +   + 
Sbjct: 15  HNIIQKNVNTNSYSKEKIDYNNSNISTSSGITTNNNKFPVNSNYQDISIKNGNYKNHSNE 74

Query: 84  EALKE---------------MMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVI 128
           +  +                    D++ NN      S      ++ S   +     K   
Sbjct: 75  KRKENESMNNNNNMKGNERYNYFHDNYQNNMKYSMKSAFNSGKKNLSTYNNNSQYSKNNG 134

Query: 129 DNAEEVVQNFNTSAREVQKIRADADKEIE----LEISNLRRFLSELTVVNDAIKFKTASK 184
                        + ++  I  +   ++E      I      L+     N  I    +  
Sbjct: 135 HTNYLQKNFKREVSDDITSISTNDINKVEDLNMNSIDKTNNMLNIKDTCNTNIVNNISDD 194

Query: 185 HDAHD----FLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240
            +         +  +V + KI+ II    I RN N           ++       N    
Sbjct: 195 VNLPGNYNIENNNTNVNMHKINNIIKNKDIKRNENFDNFQHESSQNIYGNSNNMRNSINN 254

Query: 241 NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGS 300
                 + +     +    ++N G+ +         + R +V+  + N  +         
Sbjct: 255 QLMHNRNINKVSSYNYNDANNNTGNLMNINMTHGQNENRMNVMANYSNHGNSKMLNENEK 314

Query: 301 FSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRS----------NPSF 350
            +                  +   D++                                 
Sbjct: 315 GTNIIMNKNVRNISYDNKNNNYNNDVNKLNNYDNLLNSKNISNMGGINKLDNSLDPENVN 374

Query: 351 LRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           +   G+ S     N+ + A      + + +   K+     +  I  N
Sbjct: 375 IHPSGNNSTITTLNLDSDASIYFDFSDFVNYMYKDENILTLFYIRKN 421


>gi|255523855|ref|ZP_05390819.1| methyl-accepting chemotaxis sensory transducer [Clostridium
           carboxidivorans P7]
 gi|296185905|ref|ZP_06854310.1| methyl-accepting chemotaxis protein signaling domain protein
           [Clostridium carboxidivorans P7]
 gi|255512417|gb|EET88693.1| methyl-accepting chemotaxis sensory transducer [Clostridium
           carboxidivorans P7]
 gi|296049173|gb|EFG88602.1| methyl-accepting chemotaxis protein signaling domain protein
           [Clostridium carboxidivorans P7]
          Length = 1136

 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 49/139 (35%), Gaps = 4/139 (2%)

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
           I    +++ +   + +  +     L +V               S   +       G    
Sbjct: 807 IDHVREFKGDYVSISNSLNTILDSLNDVIGEMNTASEQVSTGSSQVSDGSQALSQGATEQ 866

Query: 398 VTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQS 457
            + +E   +S+  +     ++     ++  +   + E+      V + E L  + ++ +S
Sbjct: 867 ASAIEELTSSVTEIASQTKENAINANEANQLSLKVKENA-EQGNVAMSEMLKSMAEINES 925

Query: 458 YNIS-NKLIMFTDKM-LQT 474
            + + +K+I   D++  QT
Sbjct: 926 -SANISKIIKVIDEIAFQT 943


>gi|238796902|ref|ZP_04640406.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC
           43969]
 gi|238719162|gb|EEQ10974.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC
           43969]
          Length = 121

 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            VN+  E+   I   +SY  + +++     M+
Sbjct: 82  NVNVVSEMVNTISASRSYQANVEVMNTAKSMM 113


>gi|320173527|gb|EFW48723.1| Flagellar basal-body rod protein FlgC [Shigella dysenteriae CDC
          74-1112]
          Length = 134

 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENA-DNKN-----YVRRDTMTT------ISPE 48
          M+LL +F+ A +      Q+      N+ NA          Y  +  +         +  
Sbjct: 1  MALLNIFDIAGSALTAQFQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 49 NVTVVTQ 55
           V V   
Sbjct: 61 GVKVADV 67


>gi|90577342|ref|ZP_01233153.1| flagellar basal body rod protein [Vibrio angustum S14]
 gi|90440428|gb|EAS65608.1| flagellar basal body rod protein [Vibrio angustum S14]
          Length = 144

 Score = 36.5 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 1   MSLLAVFNKAQNICNNASQQFASIVRNIENAD------NKNYVRRDTMTTISPENVTVVT 54
           M+   +++ A +  N  + +  ++  N+ NAD      N  Y     +         +  
Sbjct: 1   MAFTDIYSIAGSAMNAQTIRLNTVASNLANADAVAANPNDAYKALKPVFATVYNKTQLTG 60

Query: 55  QRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESY 114
            +++  +   +++     A   ++  +    L        + +      ++ +  +  S+
Sbjct: 61  DQADYPSAEVRIMDVVQHAGEAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSF 120

Query: 115 SKN 117
             N
Sbjct: 121 ETN 123


>gi|330830306|ref|YP_004393258.1| flagellar basal-body rod protein FlgB [Aeromonas veronii B565]
 gi|328805442|gb|AEB50641.1| Flagellar basal-body rod protein FlgB [Aeromonas veronii B565]
          Length = 132

 Score = 36.5 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
           +  +++   +  NI NAD   +  RD     +
Sbjct: 16 ISVRAKRAEVLSSNIANADTPGFKARDINFAQA 48


>gi|290990620|ref|XP_002677934.1| predicted protein [Naegleria gruberi]
 gi|284091544|gb|EFC45190.1| predicted protein [Naegleria gruberi]
          Length = 1765

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 28/344 (8%), Positives = 90/344 (26%), Gaps = 5/344 (1%)

Query: 101 THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
              I        ++  N + +       + +       +T +     I            
Sbjct: 474 NTSILNSTQFNSTFRINSTTNSTFGNSTNVSSINNTLNSTQSMNHSTIFNTTSLTSNSTQ 533

Query: 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                  S LT  N +I   + +  +        ++ L   +  +  +    N+      
Sbjct: 534 HFTNASYSNLTQSNTSITVNSTNFENTISNQTNTNISLLNGTLGVSNTNTSLNSTFNNSS 593

Query: 221 TSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD 280
            +  ++     P +       + T  + S          + +  +++      + +   D
Sbjct: 594 LNTNSSSTHEEPGNFTVFSNTTSTSDNSSQSTNSTFNSTTVSDSNSIVSSNTSSNVTTID 653

Query: 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICV 340
                    L+  +  +  +      +  N+ N      ++   +  N      +     
Sbjct: 654 GFNSTQPTSLNTNSTNVTNTSVSNTTVVMNTSNFENTSFSNSSIENSNTTSIENNIN--- 710

Query: 341 NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG-INTNVT 399
                ++ + L    S +      +   +   ++       F    I +     I+ N T
Sbjct: 711 -TLNGTDRTNLTLENSNATTLNSTLYTSSSVGNITESNNTIFANTSIENSNTSSIDLNTT 769

Query: 400 LLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443
           L     +      ++ + +   +  +  + N    + +     +
Sbjct: 770 LNGTTSDRTNSTVEHSNATTINNTLNSTLDNSSVGNITENSNTS 813


>gi|188592114|ref|YP_001796712.1| flagellar basal body rod protein flgb [Cupriavidus taiwanensis
          LMG 19424]
 gi|170938488|emb|CAP63475.1| FlgB: Flagellar basal-body rod protein [Cupriavidus taiwanensis
          LMG 19424]
          Length = 135

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 12 NICNNASQQFA-------SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFD 64
                 +  +        I  NI +AD   Y  RD   + +         R+E  ++  
Sbjct: 7  AALRFQQEALSLRNQRQSVIASNIAHADTPGYKARDFDFSSTLAQTVERGHRNEGMSLST 66

Query: 65 KVLH 68
            + 
Sbjct: 67 TSVR 70


>gi|54022778|ref|YP_117020.1| hypothetical protein nfa8110 [Nocardia farcinica IFM 10152]
 gi|54014286|dbj|BAD55656.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 7192

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 32/382 (8%), Positives = 77/382 (20%), Gaps = 11/382 (2%)

Query: 49  NVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKL- 107
            VT V  R   + + ++++   +  +G++        +                Y  +  
Sbjct: 140 GVTRVGIRMLAQQVMNRIIQWTARLVGRKVATFLVRHMAIDTFIGTFQEVGIQAYQVEFG 199

Query: 108 ---RDSLESYSKNLSEDILGKTVIDNAEEV------VQNFNTSAREVQKIRADADKEIEL 158
                + E  +        G        +           N  +  V    A A      
Sbjct: 200 RRPDINWEQVAVTAVSSAAGGAAASPFGDWIAKKLPAAMPNWLSGAVTGATAGAVGAGAG 259

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLD-QRDVLLQKISEIIGISTIVRNNNDM 217
             +++          +   K    +K+   D       V    +S           +N  
Sbjct: 260 FAASVATQFGIDAYQDGWDKAWENAKNTEFDPRMLTAGVSNGAMSGASRAMADGFYHNRH 319

Query: 218 VVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQ 277
             +    +         I           + ++P            G+    G       
Sbjct: 320 PEWYPAPSQDPPRPEPRIGGTPPGFDPAGNGTDPGGTGNADGGHTNGTGPVGGNQNGTDP 379

Query: 278 IRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISET 337
              +     +  +         +  E  P    +        A   +           E 
Sbjct: 380 AGSTGAGADRAGIAPETTAPGTAAPEAGPAGEPASQTSPAAGATPPETGAADPTTPRGEG 439

Query: 338 ICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTN 397
                   + P    D     +          G          + + +   D     +  
Sbjct: 440 STAPADGETAPGRAADHAPPDEGGAGTRGESDGEGRTDADGRPAVDADTAGDGRGETDGE 499

Query: 398 VTLLEYARNSIGWLEKNRSDSH 419
            T      ++ G        + 
Sbjct: 500 ATRSGSDPSTPGDRAATPESAD 521


>gi|33596141|ref|NP_883784.1| flagellar basal body rod protein FlgF [Bordetella parapertussis
           12822]
 gi|33601542|ref|NP_889102.1| flagellar basal body rod protein FlgF [Bordetella bronchiseptica
           RB50]
 gi|33573144|emb|CAE36791.1| flagellar basal-body rod protein FlgF [Bordetella parapertussis]
 gi|33575978|emb|CAE33057.1| flagellar basal-body rod protein FlgF [Bordetella bronchiseptica
           RB50]
          Length = 254

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 28/143 (19%), Gaps = 4/143 (2%)

Query: 3   LLAVFNKAQNICNNASQQ--FASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENK 60
           +  +   A N    A        +  N+ N +   +  +  +    P           + 
Sbjct: 1   MDRIIYTAMNG--AARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVST 58

Query: 61  NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                  +     +                 A              L+  +    +  + 
Sbjct: 59  VASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATG 118

Query: 121 DILGKTVIDNAEEVVQNFNTSAR 143
             +        E   Q   T A 
Sbjct: 119 QPVLSDQNAVIEVPDQASLTIAS 141


>gi|161485722|ref|NP_660672.3| flagellar basal body rod protein FlgF [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008455|sp|Q8K9K5|FLGF_BUCAP RecName: Full=Flagellar basal-body rod protein flgF
 gi|21623236|gb|AAM67883.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 249

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470
           I         VN  + +  +I   + + ++ K+I   D+
Sbjct: 198 IQSEMLEASNVNPTKNMIDMISNARQFEMNMKIISMCDQ 236


>gi|154253858|ref|YP_001414682.1| putative secreted protein [Parvibaculum lavamentivorans DS-1]
 gi|154157808|gb|ABS65025.1| putative secreted protein [Parvibaculum lavamentivorans DS-1]
          Length = 469

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/391 (7%), Positives = 95/391 (24%), Gaps = 22/391 (5%)

Query: 72  SAIGQQRLLQSFEALKEMMSADDHYN-----NSPTHYISKLRDSLESYSKNLSEDILGKT 126
           S + Q          +      +         +    + +LR  L++   +         
Sbjct: 32  STLSQADAGSQLTPEEMKALGIEGDTPRDTVATLVAQVKQLRTELQTALSDNKSQREENQ 91

Query: 127 VIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHD 186
            +   E  +     +A  ++  R++  ++ +   S  ++    L  +   ++        
Sbjct: 92  RLRQRENSIDQRINAA--LEAERSNLRRDQQQAASERQQTEGLLADLQRRLEAIGGRGGG 149

Query: 187 AHDFLDQRD-VLLQKISEIIGISTIVRNNNDMVVYTSDGT------TLFETVPRDINFEK 239
             D           +     G+  +  ++          +      T F    R +    
Sbjct: 150 HADLPVGLGLRDGDEAGMEGGVRWVEPDDAKKAEARGSSSGAMSFPTSFGPAQRTLETTA 209

Query: 240 MNSYTVTSESNPI----FIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295
                  + +  +     +  V  +S    +V    +   + I  +V   +  ++     
Sbjct: 210 ETVANAGARAAGVKTAKAVYTVPTNSTLMGSVAMTALIGRVPIDGTVNDPYPFKVLVGPD 269

Query: 296 VL-IGSFSEKDPIAGNSENVPG-LFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRD 353
            L        D             +    ++     +     +            +   +
Sbjct: 270 NLTANGIDIPDVAGAVFSGTASGDWTLSCVRGQVRSITFVFHDGTIRTIPEDREGNQQNN 329

Query: 354 GGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEK 413
                  ++ +   +             +  +      AG     +L+E     + ++  
Sbjct: 330 QQRDGLGWISDPYGIPCVSGERRSNAQQYLGSQALITAAG-AGVASLIESDSGQMSYVGS 388

Query: 414 NRSDSHDLHMKSQVVFNHISESYSNTVG-VN 443
           + S         + V   ++         VN
Sbjct: 389 DGSIGTVGISGQEAVGRILAGGVQEMSNWVN 419


>gi|24374761|ref|NP_718804.1| flagellar basal body rod protein FlgB [Shewanella oneidensis
          MR-1]
 gi|24349427|gb|AAN56248.1|AE015762_5 flagellar basal-body rod protein FlgB [Shewanella oneidensis
          MR-1]
          Length = 134

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSEN 59
          S++   +  NI NAD  +Y  RD   + +        Q+  +
Sbjct: 20 SERAEVLASNIANADTPHYKARDVDFSAALNVAKTQQQQRNS 61


>gi|32471663|ref|NP_864656.1| fibrinogen-binding protein [Rhodopirellula baltica SH 1]
 gi|32397034|emb|CAD72337.1| probable fibrinogen-binding protein homolog-possibly involved in
            cell-cell attachment [Rhodopirellula baltica SH 1]
          Length = 4630

 Score = 36.5 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 38/407 (9%), Positives = 74/407 (18%), Gaps = 15/407 (3%)

Query: 41   TMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSP 100
                 S   V V                +  S  G                      N  
Sbjct: 1757 VTFNESVTGVDVSDFDVVQSAGVTGAQVSSVSDQGDGISYDVVVQTGSGDGTLQLRLNDN 1816

Query: 101  THYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160
               + +    L        + +     ++                     D  +      
Sbjct: 1817 DSIVDQFGVVLGGNGAGNGDAVSDVLTVERDPRRTVRGVVFDDANDNGIKDPGEPGAENA 1876

Query: 161  SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
                 +        +  + +T     A   +D+  V       +      VR+     + 
Sbjct: 1877 GIYLDYNQNGFRDANEPEIRTPDDDPATPGIDEGGVFSFANVPLGTFDLAVRDFWFSYLS 1936

Query: 221  TSDGTTLFETVPRDINFEKMNSYT-----------VTSESNPIFIDGVVVSSNQGSAVPK 269
            +            D   +     T               +N I  DG    + Q      
Sbjct: 1937 SPGRLISVTLEFEDTELDVDVPATRNLASVRGFVYEDLNANGIRDDGEPGIAGQRIYHDN 1996

Query: 270  GKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNK 329
                A      +V+    +                        +    F  D   D    
Sbjct: 1997 NGNDAFDSFETNVITQTDDPTTPEDETGAYEIVPVPFDWDPLSSDFFWFRYDENLDWFAT 2056

Query: 330  LCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDS----FNKN 385
                   +     Q       L    S     +++  N  G  +             + N
Sbjct: 2057 SPIETGRSYSSPDQVEIFDVGLATNQSAISGLVYDDVNANGVQEFGEEPLSGWIVFLDAN 2116

Query: 386  FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHI 432
                  AG  +  TL +            R +   L      + +  
Sbjct: 2117 DNGVRDAGEPSTTTLADDPATDFDETGSYRFEQLSLGTYQVAIESQA 2163


>gi|26991080|ref|NP_746505.1| flagellar basal body rod protein FlgB [Pseudomonas putida KT2440]
 gi|24986115|gb|AAN69969.1|AE016635_5 flagellar basal-body rod protein FlgB [Pseudomonas putida KT2440]
          Length = 136

 Score = 36.5 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD      
Sbjct: 1  MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFASV 48


>gi|30261742|ref|NP_844119.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          Ames]
 gi|47526962|ref|YP_018311.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49184572|ref|YP_027824.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          Sterne]
 gi|65319011|ref|ZP_00391970.1| COG1815: Flagellar basal body protein [Bacillus anthracis str.
          A2012]
 gi|165869479|ref|ZP_02214138.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0488]
 gi|167633168|ref|ZP_02391493.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0442]
 gi|167639175|ref|ZP_02397448.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0193]
 gi|170686191|ref|ZP_02877413.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0465]
 gi|170706512|ref|ZP_02896972.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0389]
 gi|177650628|ref|ZP_02933595.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0174]
 gi|190566366|ref|ZP_03019284.1| flagellar basal-body rod protein FlgB [Bacillus anthracis
          Tsiankovskii-I]
 gi|227815499|ref|YP_002815508.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          CDC 684]
 gi|229601762|ref|YP_002866142.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0248]
 gi|254683232|ref|ZP_05147093.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          CNEVA-9066]
 gi|254723820|ref|ZP_05185606.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          A1055]
 gi|254734584|ref|ZP_05192296.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          Western North America USA6153]
 gi|254740993|ref|ZP_05198681.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          Kruger B]
 gi|254755236|ref|ZP_05207270.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          Vollum]
 gi|254759772|ref|ZP_05211796.1| flagellar basal body rod protein FlgB [Bacillus anthracis str.
          Australia 94]
 gi|30255970|gb|AAP25605.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          Ames]
 gi|47502110|gb|AAT30786.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49178499|gb|AAT53875.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          Sterne]
 gi|164714919|gb|EDR20437.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0488]
 gi|167512965|gb|EDR88338.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0193]
 gi|167531206|gb|EDR93884.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0442]
 gi|170128610|gb|EDS97477.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0389]
 gi|170669888|gb|EDT20629.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0465]
 gi|172083772|gb|EDT68832.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0174]
 gi|190562501|gb|EDV16468.1| flagellar basal-body rod protein FlgB [Bacillus anthracis
          Tsiankovskii-I]
 gi|227006070|gb|ACP15813.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          CDC 684]
 gi|229266170|gb|ACQ47807.1| flagellar basal-body rod protein FlgB [Bacillus anthracis str.
          A0248]
          Length = 135

 Score = 36.5 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|218294792|ref|ZP_03495646.1| hypothetical protein TaqDRAFT_5000 [Thermus aquaticus Y51MC23]
 gi|218244700|gb|EED11224.1| hypothetical protein TaqDRAFT_5000 [Thermus aquaticus Y51MC23]
          Length = 1195

 Score = 36.5 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 34/388 (8%), Positives = 80/388 (20%), Gaps = 17/388 (4%)

Query: 40  DTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNS 99
                       +    +      D V  A    +    LL    +    +   D     
Sbjct: 132 RVEFLSPGSGSLLRGVVTVRVQATDNVGVARVQLLDGGTLLGESTSGVNGVFTFDVD--- 188

Query: 100 PTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELE 159
            T  +     +  + + + S +    T+    +               +       +   
Sbjct: 189 -TRRLEDGARTWRAVASDRSGNFAEATLAVRVDNTAPVVRWFNPVNGAVVGGVVTLVAEA 247

Query: 160 ISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVV 219
              +   L      N  +     +  +   F         +++ +        N     V
Sbjct: 248 TDGVDGSLPVTFKANGQVL--ADADANEAGFQWDTQGYSGQVTLVAEARDGAGNVGSASV 305

Query: 220 YTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIR 279
             +   T+ +  P  + F    S ++      + +            +  G     L   
Sbjct: 306 VVTVDQTVADRTPPRVEFLSPGSGSLLRGVVTVRVQATDNVGVARVQLLDG---GTLLGE 362

Query: 280 DSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETIC 339
            +         D   R L         +A +              D    + +  +    
Sbjct: 363 STSGVNGVFTFDVDTRRLEDGARTWRAVASDRSGNFAEATLAVRVDNTAPVVRWFNPVNG 422

Query: 340 VNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVA-GINTNV 398
                                   +      +        D+      F     G +  V
Sbjct: 423 A-------VVGGVVTLVAEATDGVDGSLPVTFKANGQVLADADANEAGFQWDTQGYSGQV 475

Query: 399 TLLEYARNSIGWLEKNRSDSHDLHMKSQ 426
           TL+  AR+  G +             + 
Sbjct: 476 TLVAEARDGAGNVGSASVVVTVDQTVAD 503


>gi|228933027|ref|ZP_04095890.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|229090704|ref|ZP_04221937.1| Flagellar basal-body rod protein [Bacillus cereus Rock3-42]
 gi|228692646|gb|EEL46372.1| Flagellar basal-body rod protein [Bacillus cereus Rock3-42]
 gi|228826628|gb|EEM72399.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 138

 Score = 36.5 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|118477179|ref|YP_894330.1| flagellar basal body rod protein FlgB [Bacillus thuringiensis
          str. Al Hakam]
 gi|118416404|gb|ABK84823.1| flagellar basal-body rod protein [Bacillus thuringiensis str. Al
          Hakam]
          Length = 138

 Score = 36.5 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|78485814|ref|YP_391739.1| flagellar basal-body rod protein FlgC [Thiomicrospira crunogena
          XCL-2]
 gi|78364100|gb|ABB42065.1| Flagellar basal-body rod protein FlgC [Thiomicrospira crunogena
          XCL-2]
          Length = 136

 Score = 36.5 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENAD 32
          MS+    + +    +  + +  +I  N+ N D
Sbjct: 1  MSMFPTLDISATGMHAQTVRLNTIASNMANVD 32


>gi|312884833|ref|ZP_07744525.1| putative flagellar basal-body rod protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367485|gb|EFP95045.1| putative flagellar basal-body rod protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 243

 Score = 36.5 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 37/127 (29%), Gaps = 6/127 (4%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNY------VRRDTMTTISPENVTVVTQR 56
           + ++   A +  +   +       N+ NAD   +      V    +     +  T+V   
Sbjct: 1   MDSLLFTAASGASRVLKAQHVRANNLSNADTAGFRADMERVSSVPLKGAGFDGRTMVVTN 60

Query: 57  SENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
           S +       +     A+    + + + A++     + +              ++  ++ 
Sbjct: 61  SASTRFDAGDMVKTGRALDAAIMGEGYFAVQTPNGEEAYTRAGNLKVDEFGAVTVNGFAV 120

Query: 117 NLSEDIL 123
                 L
Sbjct: 121 IGDGGPL 127


>gi|268610218|ref|ZP_06143945.1| von Willebrand factor, type A [Ruminococcus flavefaciens FD-1]
          Length = 565

 Score = 36.5 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 74/310 (23%), Gaps = 10/310 (3%)

Query: 149 RADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS 208
                  I          L    +    I  +T                +++    + I+
Sbjct: 154 NTSIPSAISPSAFMWCDMLESQGIEVHTITDRTVGNVAGVLVDSATYSDIEQKYGTVDIN 213

Query: 209 TIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVP 268
            +V    D  + T     L  T   +     + ++  +       +DG     +    V 
Sbjct: 214 AVVSATLDGTLTTGYTNPLVSTTGLNFLASVLYNFDSSDPLGNKAVDGFKSFQDNIPFVA 273

Query: 269 KGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDN 328
              ++      +        +     + +  S + K    G   + P + I         
Sbjct: 274 YNTLQMRTAAENGTFGCMMMEYQSYIQDVTLSRNYKFIPFGIRHDNPLVAIGKLSDTEMK 333

Query: 329 KLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIF 388
            L            +  ++             +  +   + G            NKN   
Sbjct: 334 TLEMFADFCKSDKAKKLADSYGFNQMND----YKGDNIKVNGNSWTQMQKLWKTNKNSGK 389

Query: 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448
              A    + +               R+    ++  + +     S        VN+  EL
Sbjct: 390 PIAAVFVLDTSGSMSGAPLNSLKASLRNSIKYINSSNYIGVVSYS------SNVNVDLEL 443

Query: 449 SFLIKVEQSY 458
           +     +Q+Y
Sbjct: 444 AKFDLNQQAY 453


>gi|297520377|ref|ZP_06938763.1| flagellar basal body rod protein FlgC [Escherichia coli OP50]
          Length = 103

 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 15/32 (46%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            V++  E+   +   +SY  + +++     M+
Sbjct: 64  NVDVVGEMVNTMSASRSYQANVEVLNTVKSMM 95


>gi|269961597|ref|ZP_06175959.1| Flagellar basal-body rod protein flgC [Vibrio harveyi 1DA3]
 gi|269833638|gb|EEZ87735.1| Flagellar basal-body rod protein flgC [Vibrio harveyi 1DA3]
          Length = 124

 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478
            VN+ EE++ +I   ++Y  + ++   + +ML   L+ 
Sbjct: 85  NVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 122


>gi|237753201|ref|ZP_04583681.1| flagellar basal-body rod protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375468|gb|EEO25559.1| flagellar basal-body rod protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 144

 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 27/140 (19%), Gaps = 20/140 (14%)

Query: 1   MSLLAVFNKAQNICNNASQQFA-------SIVRNIENADNKNYVRRDTMTTISPENVTVV 53
           MS+ +           A +           I  NI N     Y  +D             
Sbjct: 1   MSIFS--YSPARAL--AQEALDHRALRRDMIASNIANVSTPMYRPKDVNFEQMMALKADD 56

Query: 54  TQRSENKNMFDKVLHAHSSAIGQQR---------LLQSFEALKEMMSADDHYNNSPTHYI 104
                     D  +   +  +  +                A  +  S D     S     
Sbjct: 57  IFNRNRDLELDVAITNKNHLLPAKDESPYRPTIFYRDGHLARNDGNSVDLDIETSEMGKN 116

Query: 105 SKLRDSLESYSKNLSEDILG 124
             +  +L    +        
Sbjct: 117 DIMYQALVGALRKQGGIYTY 136


>gi|209884527|ref|YP_002288384.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5]
 gi|209872723|gb|ACI92519.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5]
          Length = 255

 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/210 (8%), Positives = 49/210 (23%), Gaps = 8/210 (3%)

Query: 19  QQFASIVRNIENADNKNYVRRDTMTTISPENVT-----VVTQRSENKNMFDKVLHA-HSS 72
           +Q + +  N+ N     Y    ++      +       V   R  +       L      
Sbjct: 17  RQLSVVANNVANIGTNGYKADSSLFEEYLRSGAHEDNFVGFDRRVSFVHDRATLRDFGQG 76

Query: 73  AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT--VIDN 130
            +   +         +        N        +L+ + +    N S   +  T  VI  
Sbjct: 77  PLENTKAPLDVAISGKGFFTVQTPNGERYSRDGRLQINAQGQLVNSSGYPVLGTNGVITF 136

Query: 131 AEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDF 190
                    +    +  +     +   +         +    +         +  +    
Sbjct: 137 QPTDHDVKISDNGTITVLEGTITQTDSIRGRLRLTSFASPQQLQKEGSNLFTAPANVTGQ 196

Query: 191 LDQRDVLLQKISEIIGISTIVRNNNDMVVY 220
            D    + Q   E   ++ I   +  + + 
Sbjct: 197 DDTVSTVKQGFIERSNVNAIAEMSRMLEIT 226


>gi|157961168|ref|YP_001501202.1| flagellar basal body rod protein FlgB [Shewanella pealeana ATCC
          700345]
 gi|157846168|gb|ABV86667.1| flagellar basal-body rod protein FlgB [Shewanella pealeana ATCC
          700345]
          Length = 132

 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 18 SQQFASIVRNIENADNKNYVRRDTMTT 44
          SQ+   +  NI NAD   Y  RD   +
Sbjct: 20 SQRAEILSSNIANADTPGYKARDVDFS 46


>gi|91224202|ref|ZP_01259465.1| flagellar basal body rod protein [Vibrio alginolyticus 12G01]
 gi|269965641|ref|ZP_06179754.1| Flagellar basal-body rod protein flgB [Vibrio alginolyticus 40B]
 gi|91191113|gb|EAS77379.1| flagellar basal body rod protein [Vibrio alginolyticus 12G01]
 gi|269829709|gb|EEZ83945.1| Flagellar basal-body rod protein flgB [Vibrio alginolyticus 40B]
          Length = 120

 Score = 36.5 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 3/98 (3%)

Query: 23  SIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQS 82
            +  N+ N D   Y+ +D   T     VT               + A  S   Q     +
Sbjct: 25  VLASNLANVDTPGYLAKDLSFTTVMNQVTAGGVNKPVPKF---QVQAQYSVPYQNSKNGN 81

Query: 83  FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
              L    +     N      ++ L       +K +  
Sbjct: 82  TVELGVEQAKFTQNNMDFQTSLTFLNMKFNGLAKAIEG 119


>gi|308054805|gb|ADO01449.1| flagellin [Salmonella enterica subsp. houtenae]
          Length = 424

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 34/417 (8%), Positives = 107/417 (25%), Gaps = 4/417 (0%)

Query: 65  KVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYI-SKLRDSLESYSKNLSEDIL 123
            +L  ++    Q  L  + E L   +  +   +++    I ++   +++  S+       
Sbjct: 11  SLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLSQASRNAND 70

Query: 124 GKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTAS 183
           G ++    E  +   N + + V+++   A                    +N+  +    +
Sbjct: 71  GISIAQTTEGALNEINNNLQRVRELSVQAANGSNSGSDLKSIQDEIDQRLNEINRVAEQT 130

Query: 184 KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNSY 243
             +    L Q   L  ++    G +  +                             +  
Sbjct: 131 DFNGKKVLSQDGQLTIQVGANDGETITIDLQKIDKTELGLDKLDVTKGIATTVSSGASVV 190

Query: 244 TVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSE 303
                +   F +           +   K                 +              
Sbjct: 191 GDVKIAAADFNNAKGTGGPAADKLSLTKDDKGNYFVKDDTTTGAAKYYAATVDTTTGKIS 250

Query: 304 KDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363
            D     +           +          +     +          L    ++ K    
Sbjct: 251 FDSDKDATATAGTPPAVTTLSREVKFDGADLKADQSLVKYKDDKGKDLYAIQTLDKDGNA 310

Query: 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423
             K++    D       +       DP+A I+  +  ++  R+ +G ++     +     
Sbjct: 311 TFKSVTFAADGKTTEGTAVALAANVDPLAKIDDALKTVDAFRSQLGAVQNRFESAITNLG 370

Query: 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480
            +    +       ++   +   E+S + + +        ++   +++ Q +L  ++
Sbjct: 371 NTVNNLSSARSRIEDS---DYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 424


>gi|226327745|ref|ZP_03803263.1| hypothetical protein PROPEN_01618 [Proteus penneri ATCC 35198]
 gi|225203449|gb|EEG85803.1| hypothetical protein PROPEN_01618 [Proteus penneri ATCC 35198]
          Length = 160

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 31/113 (27%)

Query: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
           +  V   A     ++ +  A +  N+ NA    +  + +     P N   +  R+     
Sbjct: 1   MDHVIYTAMGGARHSMENQAVVANNLANASTPGFKAQLSAMRAVPVNGDTLPTRTLTVAS 60

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
                 +  +     R +    +    ++               ++ + +   
Sbjct: 61  TPGSDQSQGTMNYTGRSMDVALSDNGYLAVQLEDGTEAYTRNGNIQRNADGML 113


>gi|30019788|ref|NP_831419.1| flagellar basal body rod protein FlgB [Bacillus cereus ATCC
          14579]
 gi|49480943|ref|YP_035863.1| flagellar basal body rod protein FlgB [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|52143715|ref|YP_083114.1| flagellar basal body rod protein FlgB [Bacillus cereus E33L]
 gi|196033492|ref|ZP_03100904.1| flagellar basal-body rod protein FlgB [Bacillus cereus W]
 gi|296502343|ref|YP_003664043.1| flagellar basal body rod protein FlgB [Bacillus thuringiensis
          BMB171]
 gi|29895333|gb|AAP08620.1| Flagellar basal-body rod protein flgB [Bacillus cereus ATCC
          14579]
 gi|49332499|gb|AAT63145.1| flagellar basal-body rod protein [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|51977184|gb|AAU18734.1| flagellar basal-body rod protein [Bacillus cereus E33L]
 gi|195993926|gb|EDX57882.1| flagellar basal-body rod protein FlgB [Bacillus cereus W]
 gi|296323395|gb|ADH06323.1| flagellar basal body rod protein FlgB [Bacillus thuringiensis
          BMB171]
          Length = 135

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|228920454|ref|ZP_04083799.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229178152|ref|ZP_04305523.1| Flagellar basal-body rod protein [Bacillus cereus 172560W]
 gi|228605282|gb|EEK62732.1| Flagellar basal-body rod protein [Bacillus cereus 172560W]
 gi|228839084|gb|EEM84380.1| Flagellar basal-body rod protein [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 138

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 23 NTVSSNIANANTPGYKAQDVTFAE 46


>gi|258404782|ref|YP_003197524.1| flagellar basal-body rod protein FlgC [Desulfohalobium retbaense
          DSM 5692]
 gi|257797009|gb|ACV67946.1| flagellar basal-body rod protein FlgC [Desulfohalobium retbaense
          DSM 5692]
          Length = 142

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 20/84 (23%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNK----N--YVRRDTMTT---------- 44
          M+L    + + +     S +  +   N+ N +         Y R+  + +          
Sbjct: 1  MNLFTAMDISASAMTAQSLRMNAASSNLANTETTRTASGEPYYRKSVVLSPKNSFDDELA 60

Query: 45 ----ISPENVTVVTQRSENKNMFD 64
                   V V   R + + + D
Sbjct: 61 SRLPEGVAGVEVAAIRQDQEALRD 84


>gi|284989559|ref|YP_003408113.1| flagellar basal-body rod protein FlgB [Geodermatophilus obscurus
          DSM 43160]
 gi|284062804|gb|ADB73742.1| flagellar basal-body rod protein FlgB [Geodermatophilus obscurus
          DSM 43160]
          Length = 115

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 10/54 (18%), Gaps = 3/54 (5%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQR 56
               + A N      +       NI N     ++                 Q 
Sbjct: 6  TSTALHSALNGLAQRQR---VTADNIANLQTPGFLAGRVDFETGLRGALTSGQT 56


>gi|34557691|ref|NP_907506.1| hypothetical protein WS1332 [Wolinella succinogenes DSM 1740]
 gi|34483408|emb|CAE10406.1| hypothetical protein WS1332 [Wolinella succinogenes]
          Length = 94

 Score = 36.5 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 12/42 (28%)

Query: 7  FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPE 48
               +     S    +   N+ N + + +    T    SP 
Sbjct: 1  MQINASSIQAHSSWMNNSSHNVANVNTQGFGALQTNLEESPT 42


>gi|329901228|ref|ZP_08272753.1| Flagellar basal-body rod protein FlgC [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549160|gb|EGF33752.1| Flagellar basal-body rod protein FlgC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 122

 Score = 36.5 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 433 SESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKML 472
            + Y +   VN+ EE+  +I   +SY  + + +     +L
Sbjct: 75  EKGYVSMPNVNVVEEMVNMISASRSYQTNVETMNAAKTLL 114


>gi|255523707|ref|ZP_05390673.1| flagellar basal-body rod protein FlgB [Clostridium carboxidivorans
           P7]
 gi|296186711|ref|ZP_06855113.1| flagellar basal-body rod protein FlgB [Clostridium carboxidivorans
           P7]
 gi|255512576|gb|EET88850.1| flagellar basal-body rod protein FlgB [Clostridium carboxidivorans
           P7]
 gi|296048748|gb|EFG88180.1| flagellar basal-body rod protein FlgB [Clostridium carboxidivorans
           P7]
          Length = 133

 Score = 36.5 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 8/107 (7%), Positives = 33/107 (30%), Gaps = 3/107 (2%)

Query: 13  ICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNM---FDKVLHA 69
             + ++++  +   NI N + K Y R+      + ++           +      +    
Sbjct: 19  GLDASTERSKATADNIANINTKGYKRKYVTFEETLQSNMDDLDLKTTDDKHIKLQENYGQ 78

Query: 70  HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
            ++       +       ++ +   +   +   Y++ L  +    + 
Sbjct: 79  INTKTDNSTSMNEDGNNVDIENEKTNQAANTLMYMALLNQANSRLTS 125


>gi|206970568|ref|ZP_03231520.1| flagellar basal-body rod protein FlgB [Bacillus cereus AH1134]
 gi|218232483|ref|YP_002366428.1| flagellar basal body rod protein FlgB [Bacillus cereus B4264]
 gi|229069295|ref|ZP_04202585.1| Flagellar basal-body rod protein [Bacillus cereus F65185]
 gi|229078925|ref|ZP_04211477.1| Flagellar basal-body rod protein [Bacillus cereus Rock4-2]
 gi|206734204|gb|EDZ51374.1| flagellar basal-body rod protein FlgB [Bacillus cereus AH1134]
 gi|218160440|gb|ACK60432.1| flagellar basal-body rod protein FlgB [Bacillus cereus B4264]
 gi|228704339|gb|EEL56773.1| Flagellar basal-body rod protein [Bacillus cereus Rock4-2]
 gi|228713782|gb|EEL65667.1| Flagellar basal-body rod protein [Bacillus cereus F65185]
          Length = 135

 Score = 36.5 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|326404070|ref|YP_004284152.1| flagellar basal-body rod protein FlgF [Acidiphilium multivorum
           AIU301]
 gi|325050932|dbj|BAJ81270.1| flagellar basal-body rod protein FlgF [Acidiphilium multivorum
           AIU301]
          Length = 247

 Score = 36.5 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/191 (7%), Positives = 44/191 (23%), Gaps = 16/191 (8%)

Query: 9   KAQNICNNASQQFASIVRNIENADNKNYVRRDTMTT---------ISPENVTVVTQRSEN 59
              +    AS+    I  NI N     Y      +T          +P   + +     N
Sbjct: 7   IILSRMLTASRNVDVIANNIANVSTPGYESMHLASTTWLDHMRNVTAPPGGSTLAYTQSN 66

Query: 60  KNMFDKV---LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSK 116
               D+    +    +A+        +  ++         +            +   YS 
Sbjct: 67  GTWRDERPGAIRNTGNALDLALPGGGYFTVQTPNGPRLTRDGQFNLMPDGTIANANGYSL 126

Query: 117 NLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDA 176
             +          +          +   +   +    +   + + + +   ++   +  A
Sbjct: 127 LSTNGQPITVPPQSG----TLTIAADGTISTPQGIIGQVGVVTVPDQQSLTAQGRNLFKA 182

Query: 177 IKFKTASKHDA 187
                   +  
Sbjct: 183 STTPIPDPNPQ 193


>gi|238752868|ref|ZP_04614333.1| Flagellar basal-body rod protein FlgC [Yersinia rohdei ATCC
          43380]
 gi|238708907|gb|EEQ01160.1| Flagellar basal-body rod protein FlgC [Yersinia rohdei ATCC
          43380]
          Length = 141

 Score = 36.5 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 1  MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTISPE 48
          MS   ++  + +     + +  +I  N+ NA++        Y  R  + +    
Sbjct: 1  MSFNNIYRISGSAMTAQTIRLNTIASNLANAESPAASEATVYKARSPVFSAVYS 54


>gi|295099044|emb|CBK88133.1| Cell wall-associated hydrolases (invasion-associated proteins)
           [Eubacterium cylindroides T2-87]
          Length = 691

 Score = 36.5 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 94/406 (23%), Gaps = 29/406 (7%)

Query: 56  RSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115
           R      F K  +  +    +             ++  ++        + ++     +  
Sbjct: 191 RHFYNRFFQKKRYKDAYRAARAGKSADSLGGATTIAGVENMTVKAKIALKEIIKRNRAMF 250

Query: 116 KNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVND 175
             +    L   VI  +          A  V  I      + ++  +   R+ +  + +N 
Sbjct: 251 AGIGIFALLFLVISVSLGSCSASIEGAGSVIGITTYPSSDEDIYAAE-NRYAALESALNQ 309

Query: 176 AIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDI 235
            I        +  ++      +      +I   T    +       ++   LFE      
Sbjct: 310 QINEMERRHPNYDEYQYNIAEIGHNPYHLISYLTAKYGDWTYSDVENELQALFEAQYHLN 369

Query: 236 NFEKMNSYTVTSESNPIFIDGVVVSSN--------QGSAVPKGKIKALLQIRDSVVPIFQ 287
              +  + T T         G VV+S            +       A      ++     
Sbjct: 370 TEGRTETVTETRNVRVGESLGQVVTSGYCNCRICCGVWSGGPTASGAYPTANHTIAVDAS 429

Query: 288 NQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSN 347
           N    +   ++ +  E       +    G+       +       G             +
Sbjct: 430 NPFVPIGTKVVMNGVEYTVEDTGAFARYGVQFDVYYDNHAAASAHGHQTWEAYIADDNGS 489

Query: 348 PSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNS 407
                   S  K     + N +    +     ++                  L +     
Sbjct: 490 QEVTVTSTSTKKILYVTLTNGSFDA-VARANLNAEQLIIYNALNTTYGNRNYLWD----- 543

Query: 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453
              +    S S    M  ++    +             EE + +I+
Sbjct: 544 ---VNNVTSGSGGNGMSYEIPPEALQ-----------DEEFARMIR 575


>gi|237653586|ref|YP_002889900.1| flagellar basal-body rod protein FlgB [Thauera sp. MZ1T]
 gi|237624833|gb|ACR01523.1| flagellar basal-body rod protein FlgB [Thauera sp. MZ1T]
          Length = 134

 Score = 36.5 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTISPENV 50
               QQ   I  NI NAD  +Y  RD     + +  
Sbjct: 18 LQAHRQQL--IASNIANADTPHYKARDVDFRAALQGA 52


>gi|266621920|ref|ZP_06114855.1| flagellar basal-body rod protein FlgC [Clostridium hathewayi DSM
           13479]
 gi|288866393|gb|EFC98691.1| flagellar basal-body rod protein FlgC [Clostridium hathewayi DSM
           13479]
          Length = 144

 Score = 36.5 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 441 GVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471
            VN  EE+  L+   ++Y  +   +     M
Sbjct: 105 NVNSAEEMVDLMAATRAYEANVTALNIAKSM 135


>gi|194467077|ref|ZP_03073064.1| LPXTG-motif cell wall anchor domain protein [Lactobacillus reuteri
           100-23]
 gi|194454113|gb|EDX43010.1| LPXTG-motif cell wall anchor domain protein [Lactobacillus reuteri
           100-23]
          Length = 4141

 Score = 36.5 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 43/412 (10%), Positives = 103/412 (25%), Gaps = 9/412 (2%)

Query: 39  RDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNN 98
           +       P  + + T  +             S+  G    L       +  +       
Sbjct: 303 QTVTIDTLPTVINI-TYTATGTAFLAG--TNESTYTGSPITLNDLND-GDGDNPIYVGIE 358

Query: 99  SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158
            PT  + +L+     +S +  +    +   +     ++      + V K   +   +   
Sbjct: 359 GPTGNVYELQAGDVEFSSDNGQTWTTEMPTNAGTYELRWSKQGKQNVIKEFGNNSIKWVD 418

Query: 159 EISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMV 218
              N     +   ++N A    T S   + ++    D       +   ++     NN  V
Sbjct: 419 AQGNSTFTSTATYIINPAPATFTLSNQTSGNYTKIYDAQPTTSIDPSKLTITTNFNNAKV 478

Query: 219 VYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQI 278
           V  + G T       D     +++            D  + +  + +          L  
Sbjct: 479 VLDTTGLTSDSYEWVDAQGNPISNPENVGTYYIKLKDAALSTLEKDNPNFTLTNGGGLAT 538

Query: 279 RDSVVPIFQNQLD----EMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI 334
                      L             + +E +        V    + D  K    K     
Sbjct: 539 YTITQAQASGVLSGSNSRTYDGQATTTAEVNSNGQIGVTVTFPDVTDANKTYILKDGDYK 598

Query: 335 SETICVNPQYRSNPSFLRDGG-SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAG 393
             +        S    L   G S  +K++  +            + D+         +  
Sbjct: 599 WSSGSAPTNAGSYTITLTPDGISNIEKYILGLAGSGQNNTPNVVFADNAFTGSASYTINA 658

Query: 394 INTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQ 445
               V++      +      +   + + +   QV  +    + ++   V L 
Sbjct: 659 AENTVSVDGTQTETYTGQPISVKYNANGNNSVQVSISSKDGATASLSNVQLD 710


>gi|167034947|ref|YP_001670178.1| flagellar basal body rod protein FlgB [Pseudomonas putida GB-1]
 gi|166861435|gb|ABY99842.1| flagellar basal-body rod protein FlgB [Pseudomonas putida GB-1]
          Length = 136

 Score = 36.5 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MSLLA--VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46
          MS+         +      +Q+   +  NI NAD  NY  RD      
Sbjct: 1  MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFASV 48


>gi|260062020|ref|YP_003195100.1| hypothetical protein RB2501_10522 [Robiginitalea biformata
           HTCC2501]
 gi|88783582|gb|EAR14753.1| hypothetical protein RB2501_10522 [Robiginitalea biformata
           HTCC2501]
          Length = 503

 Score = 36.5 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 41/411 (9%), Positives = 81/411 (19%), Gaps = 24/411 (5%)

Query: 4   LAVFNKAQNICNNASQQFASIVRNIENADNKNYVR-RDTMTTISPE---NVTVVTQRSEN 59
                   +  N      A    NI      NY R        +      +  V      
Sbjct: 45  FGALGGDLSSLNINPAGSAVFSNNILTVSGGNYNRDNTAGFGPAGGTLEGLNAVELNQVG 104

Query: 60  KNMFDKVLHAHS-SAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL 118
                K     + + +         E   +         N    Y               
Sbjct: 105 GVFVFKSTEGAAWNKLALGVNYDMVENFDDSYRIIGSNPNGIDTYFLNF----------A 154

Query: 119 SEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIK 178
               LG   +   E VV  +      +      A    +            +  V+    
Sbjct: 155 QGVPLGPLRVREGETVVDAYLDIGSSLGFADQQAFLGFQ---------AGFIDPVDPDDD 205

Query: 179 FKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFE 238
             T    +A      +D +          +           Y          +   + F 
Sbjct: 206 GNTDYFSNADYSTVNQDYIQSTNGYNSKFTLNFSGQYQESFYLGASLNFHSVLYERLTFL 265

Query: 239 KMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLI 298
             + Y   S       D  + +   G ++  G I  L  +              +     
Sbjct: 266 DESGYDAGSPIQSATFDSFLHTEGSGFSMQIGAIARLGDVVRIGGAYQSPTWYRLTDDFS 325

Query: 299 GSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVS 358
            + +        +     L + +       K    ++ ++ +        SF  D    S
Sbjct: 326 QAANSDFADKNPNVTNINLGVINLFDTYTIKTPAKVTGSVALVFGPEGLLSFDYDYQDFS 385

Query: 359 KKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIG 409
              L    +     +           +            V+L    R    
Sbjct: 386 NAELRPASDANFASENAYMAEVLGGVSTYRLGGEYRIDRVSLRGGYRYQTS 436


>gi|153947514|ref|YP_001402384.1| Rhs element Vgr protein [Yersinia pseudotuberculosis IP 31758]
 gi|152959009|gb|ABS46470.1| Rhs element Vgr protein [Yersinia pseudotuberculosis IP 31758]
          Length = 782

 Score = 36.5 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/114 (7%), Positives = 29/114 (25%), Gaps = 9/114 (7%)

Query: 7   FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKV 66
           F+ +    + ++   +                  T  + S   V+V        +     
Sbjct: 540 FSFSVTGMSVSATGISV--------STTGTSLSVTGMSTSVTGVSVG-FTLIGTSFTGVS 590

Query: 67  LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSE 120
                 +        S   +   M+         ++ ++    S+   S +++ 
Sbjct: 591 ASFTGVSTSFTGASNSLTGVSNSMTGCSSSFTGTSNSMTGSSHSMTGMSTSITG 644


>gi|332826387|gb|EGJ99230.1| hypothetical protein HMPREF9455_00554 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 840

 Score = 36.5 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 33/426 (7%), Positives = 85/426 (19%), Gaps = 10/426 (2%)

Query: 9   KAQNICNNASQQFASIVRNIE------NADNKNYVRRDTMTTISPENVTVVTQRSENKNM 62
              +     +        NI        ++   Y            N T     +   + 
Sbjct: 209 IGASTLRTNTTG----SNNIAIGATALVSNTTGYSNTVVGFRALRTNTTGHNNIAVGDST 264

Query: 63  FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDI 122
                 A  +     + L +  +    ++  D         I        + + N+    
Sbjct: 265 LHNSSSASYNTAIGNKALFAISSGHSNVAIGDSALLRNQVGIGNTAVGDNALANNVVASG 324

Query: 123 LGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA 182
                             +A   + + A+        + +     +     N AI     
Sbjct: 325 NTAIGNRALASTSGGNLNTAVGEKALTANTSASANTAVGSNALANNLTGGSNTAIGTIAL 384

Query: 183 SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242
             +    +           +     +T V N+          T +        N    N+
Sbjct: 385 RSNTTGGYNTAVGTNALSENMAGKANTAVGNSALRHTTAGSNTAIGNDALYFNNTGNRNT 444

Query: 243 YTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFS 302
               S       +G                        ++   + N  +        +  
Sbjct: 445 AVGDSALYNNNTNGSTAVGYAAMFYNGTGTGNTAMGEKALFRNYSNSNNTAIGSNAMTVM 504

Query: 303 EKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFL 362
           +   +     +        G  +        ++ T   N    SN  +    G+ +    
Sbjct: 505 QAGAMNTALGSNAMSASTGGNGNTAIGYYALVNNTSSYNTAVGSNALYTNTSGANNVAIG 564

Query: 363 WNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLH 422
           +                            +    N  L     +    +  N   ++   
Sbjct: 565 YYALQSNNSSKENTAVGYRALSQSTGGNGSTAVGNNALGTGESSYNTAIGDNSMANNVDS 624

Query: 423 MKSQVV 428
             +  +
Sbjct: 625 YSNTAL 630


>gi|206974988|ref|ZP_03235903.1| flagellar basal-body rod protein FlgB [Bacillus cereus H3081.97]
 gi|206747007|gb|EDZ58399.1| flagellar basal-body rod protein FlgB [Bacillus cereus H3081.97]
          Length = 135

 Score = 36.5 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|47566126|ref|ZP_00237164.1| flagellar basal-body rod protein flgB [Bacillus cereus G9241]
 gi|47557043|gb|EAL15373.1| flagellar basal-body rod protein flgB [Bacillus cereus G9241]
          Length = 135

 Score = 36.5 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 22 ASIVRNIENADNKNYVRRDTMTTI 45
           ++  NI NA+   Y  +D     
Sbjct: 20 NTVSSNIANANTPGYKAQDVTFAE 43


>gi|220913735|ref|YP_002489044.1| flagellar basal-body rod protein FlgB [Arthrobacter
          chlorophenolicus A6]
 gi|219860613|gb|ACL40955.1| flagellar basal-body rod protein FlgB [Arthrobacter
          chlorophenolicus A6]
          Length = 113

 Score = 36.5 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 3/43 (6%)

Query: 3  LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45
            A    A +      +   +I  NI N +  NY  +      
Sbjct: 6  TSAALASALDGLALRQR---TIANNIANINTPNYKAKRVSFED 45


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.105    0.261 

Lambda     K      H
   0.267   0.0322    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,183,267,427
Number of Sequences: 14124377
Number of extensions: 127051646
Number of successful extensions: 272936
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 6802
Number of HSP's successfully gapped in prelim test: 7817
Number of HSP's that attempted gapping in prelim test: 247704
Number of HSP's gapped (non-prelim): 27003
length of query: 480
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 337
effective length of database: 2,823,007,719
effective search space: 951353601303
effective search space used: 951353601303
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 82 (36.5 bits)